Citrus Sinensis ID: 009756

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520------
Protein Sequence
MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRAKAKEMGPVKMIKGKL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHcccccccccccEEEEEcccHHHHHHHHHHHcccccHHHcccccccHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHccccccHHHHHccccccccccccccHHHHHHHccccccccccccEEEccHHHHHHHHHHHHHcccccccEEEEcccccccccccHHHHHHHHcccEEccccccHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccEEEEEEcccccHHHHHHHHHcccEEEEEEccccccccccccccccccccccHHHHHHHHHccccccccccEEEEEEccccccccccccccEEEEEEccHHHHHHcccccccHHHccccccccccEEEEccccEEEEEcccccEEEcccccccHHHHHHHHHccccccEEEEEEcccccccccEEEEEEEccccccccccccHHHHHHHHHccccccccccEEEEEcccccccccccHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccHHHHHHHcccccccccccccccccEEEEEcccccccccEEEEEcccEEEEHHccEEEEccccccEEEEEEccEEccccEEEEEHEHHcccEEEEccccHHHHHHHHHHccccEcccHHHHHHHHHHccccHccccccccEEEEEccccccHHHHHHHHHcccEEEEEEccccccccEEEccccHHHHccccHHHHccccccccccccccccEEEccccccccccccccEEEEEEEcccEHccccccHHHHHHHHHcccEEEEEEEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHcccccEEEEEEEEEEEcccEEEEEEEEEEccccccccHHccHHHHHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHHHHHccccccHHccc
Coil and Loop (DISEMBL)
mdqsttrgirltgvavdspllfpsspsdlvsviapnvpamyeaqfgapmaGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEAnsegklktphlivigdescdSKQLEYALARGAIEYEKFletgdpefawkppedewqsialgytsgttaspkgvvvSHRGAYLMSLNGALIWGMNEGAvflwtlpmfhgngwsYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIanaspedtilpltnvvnvntagappppsllfamsqkgfrithtyglteltgpasvcawkpewdslpfETQARLNARQGVRTICLDGldvidartnqpvpadgktiGEIVMRGSCvmkgylknpkaneeafangwfhsgdlavkhpdnyIEIKDRLKDVIIsggenissvEVEKVLYLHPLVLEAAVvarpderwgespcafvtlkpeadeldkgklAEDVSKFCrakmpsywvpksvvfaalpksatGKIQKHLLRAKAkemgpvkmikgkl
Flexible Loop (DISEMBL)
mdqsttrgirltgvavdspllfpSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLdvidartnqpvpadgktigeIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVtlkpeadeldkGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLrakakemgpvkmikgkl
Low Complexity Region (SEG)
MDQSTTRGIRLTGVAvdspllfpsspsdlvsvIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRAKAKEMGPVKMIKGKL
Disordered region (IsUnstruct)
*********RLTGVAVDSPLLFPS*PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMM******KLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKI**********************
Disordered Region (DISOPRED)
MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRAKAKEM***K******
Disordered Region (DISEMBL)
********IRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRAKAKEMGPVKMIKGKL
Disordered Region (DISPRO)
MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE***ARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRAKAKEM**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRAKAKEMGPVKMIKGKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	526	2.2.26 [Sep-21-2011]
Q8VZF1	569	Acetate/butyrate--CoA lig	yes	no	0.975	0.901	0.698	0.0
F4HUK6	556	Probable acyl-activating	no	no	0.908	0.859	0.514	1e-143
Q9FFE9	550	Probable acyl-activating	no	no	0.910	0.870	0.507	1e-140
Q9FFE6	552	Probable acyl-activating	no	no	0.922	0.878	0.490	1e-139
Q9SEY5	603	Probable acyl-activating	no	no	0.960	0.837	0.483	1e-138
Q9LPK7	549	Probable acyl-activating	no	no	0.906	0.868	0.484	1e-134
Q9LPK6	550	Probable acyl-activating	no	no	0.908	0.869	0.486	1e-133
Q9LQS1	544	Probable acyl-activating	no	no	0.908	0.878	0.483	1e-132
Q9C8D4	572	Butyrate--CoA ligase AAE1	no	no	0.912	0.839	0.488	1e-130
Q9SS01	580	Benzoate--CoA ligase, per	no	no	0.916	0.831	0.471	1e-128

>sp|Q8VZF1|AEE7_ARATH Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana GN=AAE7 PE=1 SV=1

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/517 (69%), Positives = 423/517 (81%), Gaps = 4/517 (0%)

Query: 3   QSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 62
           Q+  R  RL     D  +     P   V++IAPN+PAMYEA FG PM GAVLN +NIRLN
Sbjct: 52  QTYDRCRRLASALADRSI----GPGSTVAIIAPNIPAMYEAHFGVPMCGAVLNCVNIRLN 107

Query: 63  ATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE 122
           A  VAF+LSH+ S+V++VDQEFF+LAE++L++ME  +    K P LIVIGD +C  + L 
Sbjct: 108 APTVAFLLSHSQSSVIMVDQEFFTLAEDSLRLMEEKAGSSFKRPLLIVIGDHTCAPESLN 167

Query: 123 YALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSL 182
            AL++GAIEYE FL TGDP + W+PP DEWQSIALGYTSGTTASPKGVV+ HRGAY+M+L
Sbjct: 168 RALSKGAIEYEDFLATGDPNYPWQPPADEWQSIALGYTSGTTASPKGVVLHHRGAYIMAL 227

Query: 183 NGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVT 242
           +  LIWGM +GAV+LWTLPMFH NGW + WSLA L GTSICLRQVTAK VY+ IA + VT
Sbjct: 228 SNPLIWGMQDGAVYLWTLPMFHCNGWCFPWSLAVLSGTSICLRQVTAKEVYSMIAKYKVT 287

Query: 243 HFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTE 302
           HFCAAPVVLNAI NA  EDTILPL + V+V TAGA PPPS+LF+M+QKGFR+ HTYGL+E
Sbjct: 288 HFCAAPVVLNAIVNAPKEDTILPLPHTVHVMTAGAAPPPSVLFSMNQKGFRVAHTYGLSE 347

Query: 303 LTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEI 362
             GP++VCAWKPEWDSLP ETQA+LNARQGVR   ++ LDVID +T +PVPADGKT GEI
Sbjct: 348 TYGPSTVCAWKPEWDSLPPETQAKLNARQGVRYTGMEQLDVIDTQTGKPVPADGKTAGEI 407

Query: 363 VMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISS 422
           V RG+ VMKGYLKNP+AN+E FA GWFHSGD+AVKHPDNYIEIKDR KDVIISGGENISS
Sbjct: 408 VFRGNMVMKGYLKNPEANKETFAGGWFHSGDIAVKHPDNYIEIKDRSKDVIISGGENISS 467

Query: 423 VEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKM 482
           VEVE V+Y HP VLEA+VVARPDERW ESPCAFVTLK + ++ D+ KLA+D+ KFCR K+
Sbjct: 468 VEVENVVYHHPAVLEASVVARPDERWQESPCAFVTLKSDYEKHDQNKLAQDIMKFCREKL 527

Query: 483 PSYWVPKSVVFAALPKSATGKIQKHLLRAKAKEMGPV 519
           P+YWVPKSVVF  LPK+ATGKIQKH+LR KAKEMGPV
Sbjct: 528 PAYWVPKSVVFGPLPKTATGKIQKHILRTKAKEMGPV 564

Peroxisomal acetate/butyrate--CoA ligase that is probably involved in the activation of exogenous acetate for entry into the glyoxylate cycle. May play a role to prevent carbon loss from peroxisomes during lipid mobilization. In vitro, is active with both acetate and butyrate.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 2

>sp|F4HUK6|AAE1_ARATH Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1

 Score =  509 bits (1311), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 255/496 (51%), Positives = 334/496 (67%), Gaps = 18/496 (3%)

Query: 25  SPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEF 84
           S  D+VSV+APNVPAM E  FG PMAGA+L ++NIR ++++VA +L H+ + V+  D +F
Sbjct: 64  STGDVVSVLAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQF 123

Query: 85  FSLAEEALKMMEANSEGKLKTPHLIVIGD---ESCDSKQLEYALARGAIEYEKFLETGDP 141
             +AE A +++    +   K P L++I +   +S   K+    +    +EYE  +  G  
Sbjct: 124 LQIAEGACEILSNKGD---KVPILVLIPEPLTQSVSRKKRSEEM----MEYEDVVAMGKS 176

Query: 142 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP 201
           +F    P DE  +I++ YTSGTT+SPKGVV SHRGAYL SL   L+  M+    +LWT P
Sbjct: 177 DFEVIRPTDECDAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNP 236

Query: 202 MFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED 261
           MFH NGW   W + A+ GT+ICLR VTAKA++  I+ H VTH   AP +LN I NA PE 
Sbjct: 237 MFHCNGWCLLWGVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIINA-PES 295

Query: 262 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPF 321
              PL   V+  T  APPP  ++F M + GF + H+YGLTE  GP ++C WKPEWDSLP 
Sbjct: 296 EQKPLPGKVSFITGAAPPPAHVIFKMEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPR 355

Query: 322 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 381
           E QA++ ARQGV  + L+ + V D  T + +PADG T+GE+V RG+ VM GYLKNP+A +
Sbjct: 356 EEQAKMKARQGVNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATK 415

Query: 382 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 441
           EAF  GWF SGDL VKHPD YIE+KDR KD+IISGGENISS+EVE  L+ HP VLEAAVV
Sbjct: 416 EAFKGGWFWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAVV 475

Query: 442 ARPDERWGESPCAFVTLKPEADELDKGKL-AEDVSKFCRAKMPSYWVPKSVVFAALPKSA 500
           ARPDE WGE+ CAFV LK      D  K  AE++  +CR ++P Y  P+S+VF  LPK++
Sbjct: 476 ARPDEYWGETACAFVKLK------DGSKASAEELISYCRDRLPHYMAPRSIVFEDLPKTS 529

Query: 501 TGKIQKHLLRAKAKEM 516
           TGK+QK +LR KAK +
Sbjct: 530 TGKVQKFVLRTKAKAL 545

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FFE9|AAE6_ARATH Probable acyl-activating enzyme 6 OS=Arabidopsis thaliana GN=AAE6 PE=2 SV=1

 Score =  498 bits (1283), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/493 (50%), Positives = 331/493 (67%), Gaps = 14/493 (2%)

Query: 27  SDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFS 86
           SD+VSV++PN PAMYE QF  PM+GA+LN+IN RL+A  V+ +L H  S ++ VD     
Sbjct: 65  SDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDVFSVD 124

Query: 87  LAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA-LARGAIEYEKFLETGDPEFAW 145
           LA EA+ MM  +       P L+VI D+  +    + A L++ +  Y+  +E GDP F W
Sbjct: 125 LAVEAVSMMTTDP------PILVVIADKEEEGGVADVADLSKFSYTYDDLIERGDPGFKW 178

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
             PE EW  + L YTSGTT++PKGVV  HRG ++MS++  + W + +  V+LWTLP+FH 
Sbjct: 179 IRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSVDSLIDWAVPKNPVYLWTLPIFHS 238

Query: 206 NGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP 265
           NGW+  W +AA+ GT++CLR+  A  +Y  I  HGVTH C APVVLN ++ A+ E    P
Sbjct: 239 NGWTNPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLS-ATQESQ--P 295

Query: 266 LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQA 325
           L + VN+ TAG+PPP ++L      GF I+H YGLTE  G    CAWKP+W+ LP   +A
Sbjct: 296 LNHPVNILTAGSPPPATVLLRAESIGFVISHGYGLTETAGVIVSCAWKPKWNHLPASDRA 355

Query: 326 RLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
           RL ARQGVRT+    +DV+D  +   V  +G+T+GEIVMRGS VM GYLK+P   E+A  
Sbjct: 356 RLKARQGVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTEKALK 415

Query: 386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 445
           NGWF++GD+ V H D Y+EIKDR KD+II+GGEN+SSVEVE VLY  P V E AVVARPD
Sbjct: 416 NGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTIPAVNEVAVVARPD 475

Query: 446 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKI 504
           E WGE+PCAFV+LK   +        E++ ++CR KMP Y VPK+V F   LPKS+TGK+
Sbjct: 476 EFWGETPCAFVSLK---NGFSGKPTEEELMEYCRKKMPKYMVPKTVSFMDELPKSSTGKV 532

Query: 505 QKHLLRAKAKEMG 517
            K +LR  AK+MG
Sbjct: 533 TKFVLRDIAKKMG 545

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FFE6|AAE5_ARATH Probable acyl-activating enzyme 5, peroxisomal OS=Arabidopsis thaliana GN=AAE5 PE=2 SV=1

 Score =  496 bits (1277), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/499 (49%), Positives = 329/499 (65%), Gaps = 14/499 (2%)

Query: 27  SDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFS 86
           SD+VSV++PN PAMYE QF  PM+GA+LN+IN RL+A  V+ +L H  S ++ VD     
Sbjct: 65  SDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCGSKLLFVDVFSVD 124

Query: 87  LAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA-LARGAIEYEKFLETGDPEFAW 145
           LA EA+ MM  +       P L+ I D+  +    + A   + +  Y+  +  GD +F W
Sbjct: 125 LAVEAISMMTTDP------PILVFIADKEEEGGDADVADRTKFSYTYDDLIHRGDLDFKW 178

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
             PE EW  + L YTSGTT++PKGVV  HRG ++MS++  + W + +  V+LWTLP+FH 
Sbjct: 179 IRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSIDSLIDWTVPKNPVYLWTLPIFHA 238

Query: 206 NGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP 265
           NGWSY W +AA+ GT++CLR+  A  +Y  I  HGVTH C APVVLN +   S  +   P
Sbjct: 239 NGWSYPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNML---SATNEFQP 295

Query: 266 LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQA 325
           L   VN+ TAGAPPP ++L      GF I+H YGLTE  G    CAWKP+W+ LP   +A
Sbjct: 296 LNRPVNILTAGAPPPAAVLLRAESIGFVISHGYGLTETAGLNVSCAWKPQWNRLPASDRA 355

Query: 326 RLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
           RL ARQGVRT+    +DV+D  + + V  +G+T+GEIVMRGS +M GYLK+P   E+A  
Sbjct: 356 RLKARQGVRTVGFTEIDVVDPESGRSVERNGETVGEIVMRGSSIMLGYLKDPVGTEKALK 415

Query: 386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 445
           NGWF++GD+ V H D Y+EIKDR KD+II+GGEN+SSVEVE VLY +P V E AVVARPD
Sbjct: 416 NGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTNPAVNEVAVVARPD 475

Query: 446 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKI 504
             WGE+PCAFV+LK     L +     ++ ++CR KMP Y VPK+V F   LPK++TGK+
Sbjct: 476 VFWGETPCAFVSLK---SGLTQRPTEVEMIEYCRKKMPKYMVPKTVSFVDELPKTSTGKV 532

Query: 505 QKHLLRAKAKEMGPVKMIK 523
            K +LR  AK+MG  ++ +
Sbjct: 533 MKFVLREIAKKMGTTRLSR 551

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SEY5|AAE2_ARATH Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1

 Score =  491 bits (1265), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 252/521 (48%), Positives = 336/521 (64%), Gaps = 16/521 (3%)

Query: 3   QSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 62
           Q+  R +RL     +  +    S  D+V+ +APNVPAM+E  F  PMAG +L  +N RL+
Sbjct: 91  QTYQRCLRLASALTNLGI----SRGDVVAALAPNVPAMHELHFAVPMAGLILCPLNTRLD 146

Query: 63  ATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE 122
            + ++ +L+H+ + ++ VD +   +A  AL ++ A S+   K+  L++I   + D    E
Sbjct: 147 PSTLSVLLAHSEAKILFVDHQLLEIAHGALDLL-AKSDKTRKSLKLVLISQSNDDDDSDE 205

Query: 123 YALARGA------IEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRG 176
            + +  A       EYE  L++GD EF    P  EW  I++ YTSGTT+ PKGVV SHRG
Sbjct: 206 DSSSTFASKYSFDYEYETLLKSGDSEFEIIKPRCEWDPISINYTSGTTSRPKGVVYSHRG 265

Query: 177 AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAI 236
           AYL SL    +  M+   V+LWT+PMFH NGW   W +AA  GT+ICLR+V+ K ++  I
Sbjct: 266 AYLNSLATVFLHQMSVYPVYLWTVPMFHCNGWCLVWGVAAQGGTNICLRKVSPKMIFKNI 325

Query: 237 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITH 296
           A H VTH   AP VLN I N +  +   PL + V + T G+PP P +L  M + GF ++H
Sbjct: 326 AMHKVTHMGGAPTVLNMIVNYTVTEHK-PLPHRVEIMTGGSPPLPQILAKMEELGFNVSH 384

Query: 297 TYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADG 356
            YGLTE  GP + C WKPEWDSL  E + +L ARQGV+ + L+GLDV D  T + VP DG
Sbjct: 385 LYGLTETYGPGTHCVWKPEWDSLSLEERTKLKARQGVQHLGLEGLDVKDPLTMETVPDDG 444

Query: 357 KTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISG 416
            T+GE++ RG+ VM GY K+ +A  +AF   WFHSGDLAVK+PD YIEIKDRLKDVIISG
Sbjct: 445 LTMGEVMFRGNTVMSGYFKDIEATRKAFEGDWFHSGDLAVKYPDGYIEIKDRLKDVIISG 504

Query: 417 GENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK 476
           GENISSVEVE+VL  H  VLEAAVVARPD  WG++PC FV LK   D +      E++  
Sbjct: 505 GENISSVEVERVLCSHQAVLEAAVVARPDHHWGQTPCGFVKLKEGFDTIK----PEEIIG 560

Query: 477 FCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRAKAKEMG 517
           FCR  +P Y  PK++VF  +PK++TGK+QK+LLR KA EMG
Sbjct: 561 FCRDHLPHYMAPKTIVFGDIPKTSTGKVQKYLLRKKADEMG 601

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LPK7|AEE10_ARATH Probable acyl-activating enzyme 10 OS=Arabidopsis thaliana GN=AEE10 PE=2 SV=1

 Score =  479 bits (1233), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/491 (48%), Positives = 325/491 (66%), Gaps = 14/491 (2%)

Query: 29  LVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLA 88
           +VSV+ PNVP++YE QF  PM+GA+LN+IN RL+A  ++ +L H+ S +V VD    SL 
Sbjct: 69  VVSVVGPNVPSVYELQFAVPMSGAILNNINPRLDAHALSVLLRHSESRLVFVDHRSISLV 128

Query: 89  EEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
            EA+ +   + +     PHL+++ D   D +    + +     YE+ +E G+  F W  P
Sbjct: 129 LEAVSLFTQHEK-----PHLVLLDD---DQENDSSSASDFLDTYEEIMERGNSRFKWIRP 180

Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 208
           + EWQ + L YTSGTT+SPKGVV+SHR  ++++++  L W +    V+LWTLPMFH NGW
Sbjct: 181 QTEWQPMVLNYTSGTTSSPKGVVLSHRAIFMLTVSSLLDWSVPNRPVYLWTLPMFHANGW 240

Query: 209 SYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTN 268
            YTW  AA+  T+IC R+V A  +Y  I  H VTH CAAP+VLN + N  P  T  PL N
Sbjct: 241 GYTWGTAAVGATNICTRRVDAPTIYNLIDKHNVTHMCAAPMVLNMLINY-PLST--PLKN 297

Query: 269 VVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN 328
            V V T+GAPPP +++      GF ++H+YGLTE +GP   CAWKP+WD L    +ARL 
Sbjct: 298 PVQVMTSGAPPPATIISRAESLGFNVSHSYGLTETSGPVVSCAWKPKWDHLDPLERARLK 357

Query: 329 ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANG 387
           +RQGVRT+    +DV D +T + V  DG ++GEIV RGS VM GY K+P+        +G
Sbjct: 358 SRQGVRTLGFTEVDVRDRKTGKSVKHDGVSVGEIVFRGSSVMLGYYKDPQGTAACMREDG 417

Query: 388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 447
           WF+SGD+ V H D Y+EIKDR KDVII GGENISS E+E VLY +P+V EAAVVA+PD+ 
Sbjct: 418 WFYSGDIGVIHKDGYLEIKDRSKDVIICGGENISSAEIETVLYTNPVVKEAAVVAKPDKM 477

Query: 448 WGESPCAFVTLKPEADELDKGKLAE-DVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 505
           WGE+PCAFV+LK + +      + E ++ +FC+ K+P Y VP+ V+F   LPK++TGKIQ
Sbjct: 478 WGETPCAFVSLKCDNNGDGSVPVTEREIREFCKTKLPKYMVPRKVIFQEELPKTSTGKIQ 537

Query: 506 KHLLRAKAKEM 516
           K LLR  AK +
Sbjct: 538 KFLLRQMAKTL 548

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LPK6|AEE9_ARATH Probable acyl-activating enzyme 9 OS=Arabidopsis thaliana GN=AEE9 PE=2 SV=1

 Score =  476 bits (1224), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/491 (48%), Positives = 317/491 (64%), Gaps = 13/491 (2%)

Query: 29  LVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLA 88
           +VSV+ PNVP++YE QF  PM+GA+LN+IN RL+A  ++ +L H+ S +V VD    S+ 
Sbjct: 69  VVSVVGPNVPSVYELQFAVPMSGAILNNINPRLDAHALSVLLRHSESKLVFVDPNSISVV 128

Query: 89  EEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
            EA+  M  N +     PHL+++ D+  D      A +     Y+  +E GD  F W  P
Sbjct: 129 LEAVSFMRQNEK-----PHLVLLDDDQEDGSLSPSAASDFLDTYQGVMERGDSRFKWIRP 183

Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 208
           + EWQ + L YTSGTT+SPKGVV+SHR  ++++++  L W      V+LWTLPMFH NGW
Sbjct: 184 QTEWQPMILNYTSGTTSSPKGVVLSHRAIFMLTVSSLLDWHFPNRPVYLWTLPMFHANGW 243

Query: 209 SYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTN 268
            YTW  AA+  T++C R+V A  +Y  I  H VTH CAAP+VLN + N        PL N
Sbjct: 244 GYTWGTAAVGATNVCTRRVDAPTIYDLIDKHHVTHMCAAPMVLNMLTNYPSRK---PLKN 300

Query: 269 VVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN 328
            V V TAGAPPP +++      GF + H YGLTE  GP   CAWK EWD L    +ARL 
Sbjct: 301 PVQVMTAGAPPPAAIISRAETLGFNVGHGYGLTETGGPVVSCAWKAEWDHLDPLERARLK 360

Query: 329 ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANG 387
           +RQGVRTI    +DV D RT + V  DG ++GEIV++G  VM GY K+P+        +G
Sbjct: 361 SRQGVRTIGFAEVDVRDPRTGKSVEHDGVSVGEIVLKGGSVMLGYYKDPEGTAACMREDG 420

Query: 388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 447
           WF+SGD+ V H D Y+E+KDR KDVII GGENISS EVE VLY +P+V EAAVVA+PD+ 
Sbjct: 421 WFYSGDVGVIHEDGYLEVKDRSKDVIICGGENISSAEVETVLYTNPVVKEAAVVAKPDKM 480

Query: 448 WGESPCAFVTLKPEADELDKGKLAE-DVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 505
           WGE+PCAFV+LK   D    G + E ++ +FC+ ++P Y VP+ V+F   LPK++TGKIQ
Sbjct: 481 WGETPCAFVSLK--YDSNGNGLVTEREIREFCKTRLPKYMVPRKVIFQEELPKTSTGKIQ 538

Query: 506 KHLLRAKAKEM 516
           K LLR  AK +
Sbjct: 539 KFLLRQMAKSL 549

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LQS1|AAE8_ARATH Probable acyl-activating enzyme 8 OS=Arabidopsis thaliana GN=AAE8 PE=2 SV=1

 Score =  473 bits (1216), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 238/492 (48%), Positives = 322/492 (65%), Gaps = 14/492 (2%)

Query: 27  SDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFS 86
           SD+VSV++ N P MYE QF  PM+GA+LN+IN RL+A  V+ +L H  S ++ VD  +  
Sbjct: 65  SDVVSVLSANTPEMYELQFSVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDFFYSD 124

Query: 87  LAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA-LARGAIEYEKFLETGDPEFAW 145
           LA EA+ M+       L  P L++I +E  +    E    ++    Y   +  G+P+F W
Sbjct: 125 LAVEAITML-------LNPPILVLIANEEEEEGGAEVTERSKFCYLYSDLITRGNPDFKW 177

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
             P  EW  I + YTSGTT+SPKGVV  HRG ++M+L+    W + +  V+LWTLP+FH 
Sbjct: 178 IRPGSEWDPIVVNYTSGTTSSPKGVVHCHRGIFVMTLDSLTDWAVPKTPVYLWTLPIFHA 237

Query: 206 NGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP 265
           NGW+Y W +AA+ GT++C+R++ A ++Y  I  HGVTH   AP+VL  ++ +   D   P
Sbjct: 238 NGWTYPWGIAAVGGTNVCVRKLHAPSIYHLIRDHGVTHMYGAPIVLQILSASQESDQ--P 295

Query: 266 LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQA 325
           L + VN  TAG+ PP ++L      GF ++H YGLTE  G    CAWKP W+ LP   QA
Sbjct: 296 LKSPVNFLTAGSSPPATVLLRAESLGFIVSHGYGLTETAGVIVSCAWKPNWNRLPASDQA 355

Query: 326 RLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
           +L +RQGVRT+    +DV+D  + + V  DG+T+GEIV+RGS +M GYLKNP   + +F 
Sbjct: 356 QLKSRQGVRTVGFSEIDVVDPESGRSVERDGETVGEIVLRGSSIMLGYLKNPIGTQNSFK 415

Query: 386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 445
           NGWF +GDL V H D Y+EIKDR KDVIISGGEN+SSVEVE VLY +P V EAAVVARPD
Sbjct: 416 NGWFFTGDLGVIHGDGYLEIKDRSKDVIISGGENVSSVEVEAVLYTNPAVNEAAVVARPD 475

Query: 446 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKI 504
           E WGE+PCAFV+LKP    L +    +++ ++C+ KMP Y  PK+V F   LPK++TGKI
Sbjct: 476 EFWGETPCAFVSLKP---GLTRKPTDKEIIEYCKYKMPRYMAPKTVSFLEELPKTSTGKI 532

Query: 505 QKHLLRAKAKEM 516
            K LL+  AK M
Sbjct: 533 IKSLLKEIAKNM 544

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C8D4|AAE11_ARATH Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana GN=AAE11 PE=1 SV=1

 Score =  466 bits (1200), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/495 (48%), Positives = 313/495 (63%), Gaps = 15/495 (3%)

Query: 27  SDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFS 86
           +D+VS++APNVPAMYE  F  PM GAVLN IN RL+A  +A IL HA   ++ VD EF  
Sbjct: 64  NDVVSILAPNVPAMYEMHFSVPMTGAVLNPINTRLDAKTIAIILRHAEPKILFVDYEFAP 123

Query: 87  LAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWK 146
           L +E L+++          P +I+I +    +K     L     +YE  +  G+P  +  
Sbjct: 124 LIQEVLRLIPTYQSQP--HPRIILINEIDSTTKPFSKEL-----DYEGLIRKGEPTPSSS 176

Query: 147 PP----EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPM 202
                  +E   I+L YTSGTTA PKGVV+SH+GAYL +L+  + W M    V+LWTLPM
Sbjct: 177 ASMFRVHNEHDPISLNYTSGTTADPKGVVISHQGAYLSALSSIIGWEMGIFPVYLWTLPM 236

Query: 203 FHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT 262
           FH NGW++TWS+AA  GT++C+R VTA  +Y  I  HGVTH    P V   +   S  D 
Sbjct: 237 FHCNGWTHTWSVAARGGTNVCIRHVTAPEIYKNIELHGVTHMSCVPTVFRFLLEGSRTDQ 296

Query: 263 ILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFE 322
             P ++ V V T G+ PP  L+  + Q GF + H YGLTE TGP   C W+ EW+ LP  
Sbjct: 297 -SPKSSPVQVLTGGSSPPAVLIKKVEQLGFHVMHGYGLTEATGPVLFCEWQDEWNKLPEH 355

Query: 323 TQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 382
            Q  L  RQGVR + L  +DV + +T + VP DGKT+GEIV++GS +MKGYLKNPKA  E
Sbjct: 356 QQIELQQRQGVRNLTLADVDVKNTKTLESVPRDGKTMGEIVIKGSSLMKGYLKNPKATSE 415

Query: 383 AFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVA 442
           AF +GW ++GD+ V HPD Y+EIKDR KD+IISGGENISS+EVEKVLY++  VLEAAVVA
Sbjct: 416 AFKHGWLNTGDIGVIHPDGYVEIKDRSKDIIISGGENISSIEVEKVLYMYQEVLEAAVVA 475

Query: 443 RPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV-FAALPKSAT 501
            P   WGE+PCAFV LK   + L   +   D+ K+CR  MP +  PK VV F  LPK++ 
Sbjct: 476 MPHPLWGETPCAFVVLKKGEEGLVTSE--GDLIKYCRENMPHFMCPKKVVFFQELPKNSN 533

Query: 502 GKIQKHLLRAKAKEM 516
           GKI K  LR  AK +
Sbjct: 534 GKILKSKLRDIAKAL 548

Butyrate--CoA ligase that is active in vitro with medium-chain fatty acids, with a preference for hexanoate and octanoate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9SS01|AAE20_ARATH Benzoate--CoA ligase, peroxisomal OS=Arabidopsis thaliana GN=AAE20 PE=1 SV=1

 Score =  460 bits (1184), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/501 (47%), Positives = 320/501 (63%), Gaps = 19/501 (3%)

Query: 25  SPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEF 84
           S +D+VSV+APN PA+YE  F  PMAGAVLN IN RL+AT +A IL HA   ++ +D+ F
Sbjct: 62  SKNDVVSVMAPNTPALYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFLDRSF 121

Query: 85  FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFA 144
            +LA E+L ++ ++ +  L  P + +  ++       E       ++YE  ++ G+P  +
Sbjct: 122 EALARESLHLL-SSEDSNLNLPVIFIHENDFPKRASFE------ELDYECLIQRGEPTPS 174

Query: 145 WKPP----EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTL 200
                   +DE   I+L YTSGTTA PKGVV+SHRGAYL +L+  + W M    V+LWTL
Sbjct: 175 MVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLCTLSAIIGWEMGTCPVYLWTL 234

Query: 201 PMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE 260
           PMFH NGW++TW  AA  GTS+C+R VTA  +Y  I  H VTH C  P V N +   +  
Sbjct: 235 PMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSL 294

Query: 261 DTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLP 320
           D + P +  V+V T G+PPP +L+  + + GF++ H YG TE TGP   C W+ EW+ LP
Sbjct: 295 D-LSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGQTEATGPILFCEWQDEWNRLP 353

Query: 321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
              Q  L ARQG+  + L  +DV +  T +  P DGKT+GEI+++GS +MKGYLKNPKA 
Sbjct: 354 ENQQMELKARQGISILGLADVDVKNKETQKSAPRDGKTMGEILIKGSSIMKGYLKNPKAT 413

Query: 381 EEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 440
            EAF +GW ++GD+ V HPD ++EIKDR KD+IISGGENISSVEVE VLY +P VLE AV
Sbjct: 414 FEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAV 473

Query: 441 VARPDERWGESPCAFVTLKP-----EADELDKGKLAE-DVSKFCRAKMPSYWVPKSVVF- 493
           VA P   WGE+PCAFV L+      + D +DK +  E ++ ++CR  +P +  P+ VVF 
Sbjct: 474 VAMPHPTWGETPCAFVVLEKSETTIKEDRVDKFQTRERNLIEYCRENLPHFMCPRKVVFL 533

Query: 494 AALPKSATGKIQKHLLRAKAK 514
             LPK+  GKI K  LR  AK
Sbjct: 534 EELPKNGNGKILKPKLRDIAK 554

Benzoate--CoA ligase involved in benzoyloxyglucosinolate biosynthesis in seeds. Glucosinolates are secondary metabolites involved in pathogen and insect defense of cruciferous plants.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	526
449432900	567	PREDICTED: acetate/butyrate--CoA ligase	0.942	0.874	0.756	0.0
255556324	564	AMP dependent ligase, putative [Ricinus	0.937	0.874	0.769	0.0
255556322	565	AMP dependent ligase, putative [Ricinus	0.980	0.913	0.740	0.0
147854579	567	hypothetical protein VITISV_017128 [Viti	0.939	0.871	0.746	0.0
225431902	567	PREDICTED: medium-chain-fatty-acid--CoA	0.939	0.871	0.744	0.0
225431900	567	PREDICTED: medium-chain-fatty-acid--CoA	0.939	0.871	0.744	0.0
357478905	566	2-succinylbenzoate-CoA ligase [Medicago	0.941	0.874	0.741	0.0
356521803	568	PREDICTED: medium-chain-fatty-acid--CoA	0.941	0.871	0.75	0.0
356564634	569	PREDICTED: medium-chain-fatty-acid--CoA	0.941	0.869	0.741	0.0
217074538	566	unknown [Medicago truncatula] gi|3884930	0.941	0.874	0.737	0.0

>gi|449432900|ref|XP_004134236.1| PREDICTED: acetate/butyrate--CoA ligase AAE7, peroxisomal-like [Cucumis sativus] gi|449503854|ref|XP_004162208.1| PREDICTED: acetate/butyrate--CoA ligase AAE7, peroxisomal-like [Cucumis sativus]

 Score =  814 bits (2103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/496 (75%), Positives = 437/496 (88%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           D V++IAPN+PA+YEA FG PMAGAVLN +NIRLNA  ++F+L H++SAVV+VDQEFF L
Sbjct: 71  DTVAIIAPNIPAIYEAHFGVPMAGAVLNCVNIRLNAQTISFLLGHSASAVVMVDQEFFPL 130

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
           AEEAL ++ A  +G  K P LIVIGDE+CD + L+YAL++GAIEYEKFLE G+PE+AWKP
Sbjct: 131 AEEALNILAAKGDGHYKPPLLIVIGDENCDPEALKYALSKGAIEYEKFLEIGNPEYAWKP 190

Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 207
           PEDEWQSI LGYTSGTTASPKGVV+SHRGAY+MSL+  L+WGMNEGA++LWTLPMFH NG
Sbjct: 191 PEDEWQSITLGYTSGTTASPKGVVLSHRGAYVMSLSAGLVWGMNEGAIYLWTLPMFHCNG 250

Query: 208 WSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 267
           W YTW+LAALCGTSICLRQVTAKAVY+AIA H VTHFCAAPVVLN I NA  EDTILPL 
Sbjct: 251 WCYTWALAALCGTSICLRQVTAKAVYSAIAKHKVTHFCAAPVVLNTIVNAPKEDTILPLP 310

Query: 268 NVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARL 327
           +VV+V TAGA PPPS+L+AMSQKGFRITHTYGL+E  GP+++CAWKPEWDSLP E QAR+
Sbjct: 311 HVVHVMTAGAAPPPSVLYAMSQKGFRITHTYGLSETYGPSTICAWKPEWDSLPPEAQARM 370

Query: 328 NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG 387
           NARQGVR + L+GLDV++ +T QPVP+DGKT+GEIVMRG+ VMKGYLKNPKAN+EAFANG
Sbjct: 371 NARQGVRYVGLEGLDVVNTQTMQPVPSDGKTVGEIVMRGNAVMKGYLKNPKANKEAFANG 430

Query: 388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 447
           WFHSGDL VKHPD YIEIKDR KD+IISGGENISSVE+E  LY HP +LE +VVAR DER
Sbjct: 431 WFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSVEIENTLYQHPAILEVSVVARADER 490

Query: 448 WGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKH 507
           WGESPCAFVTLK + D+ D+ ++AED+ KFC++KMP+YWVPKSVVF  LPK+ATGK+QKH
Sbjct: 491 WGESPCAFVTLKSKIDKGDEQRMAEDIMKFCKSKMPAYWVPKSVVFGELPKTATGKVQKH 550

Query: 508 LLRAKAKEMGPVKMIK 523
           LLRAKAKEMGPVKM K
Sbjct: 551 LLRAKAKEMGPVKMSK 566

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556324|ref|XP_002519196.1| AMP dependent ligase, putative [Ricinus communis] gi|223541511|gb|EEF43060.1| AMP dependent ligase, putative [Ricinus communis]

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/494 (76%), Positives = 431/494 (87%), Gaps = 1/494 (0%)

Query: 30  VSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAE 89
           V+VIAPN+PA+YEA FG PMAGAVLN++NIRL+A  +AF+L H+ S VV+VDQE+F LAE
Sbjct: 71  VAVIAPNIPALYEAHFGVPMAGAVLNTVNIRLDAPTIAFLLGHSRSTVVMVDQEYFHLAE 130

Query: 90  EALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPE 149
            A K++ A  E     P LIVI DESCD KQL++AL RGAIEYEKFLE GDPEFAWKPPE
Sbjct: 131 GAFKIL-AEKENNFSPPLLIVIADESCDPKQLQHALKRGAIEYEKFLENGDPEFAWKPPE 189

Query: 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS 209
           DEWQSIALGYTSGTTASPKGVV+SHRGAYLM+L+ A+IWG+NEGAV+LWTLPMFH NGW 
Sbjct: 190 DEWQSIALGYTSGTTASPKGVVLSHRGAYLMALSCAMIWGLNEGAVYLWTLPMFHCNGWC 249

Query: 210 YTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 269
           YTWSLAALCGT+ICLRQVTAKAVY+AIA  GVTHFCAAPVVLN I NA  E+ ILPL  V
Sbjct: 250 YTWSLAALCGTNICLRQVTAKAVYSAIANQGVTHFCAAPVVLNTIVNAPKEEAILPLPRV 309

Query: 270 VNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 329
           V+VNTAGA PPPSLLFAMS+KGFR+THTYGL+E  GP++VCAWKPEWDSLP   QARLNA
Sbjct: 310 VHVNTAGAAPPPSLLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPIKQARLNA 369

Query: 330 RQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF 389
           RQGVR I L+GLDV+D +TN+PVPADGKT+GEIVMRG+ VMKGYLKNP+AN+EAFANGWF
Sbjct: 370 RQGVRYIGLEGLDVVDTKTNKPVPADGKTMGEIVMRGNLVMKGYLKNPEANKEAFANGWF 429

Query: 390 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 449
           HSGDLAVKHPD YIEIKDR KD+IISGGENISS+EVE VLY HP V E +VVAR DERWG
Sbjct: 430 HSGDLAVKHPDGYIEIKDRNKDIIISGGENISSLEVENVLYTHPAVFEVSVVAREDERWG 489

Query: 450 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLL 509
           ESPCAFVTLK   D+ D+G+LAED+ KFC++KMP+YWVPKSVVF  LPK+ATGKIQKH+L
Sbjct: 490 ESPCAFVTLKEGTDKSDEGRLAEDIMKFCKSKMPAYWVPKSVVFGPLPKTATGKIQKHVL 549

Query: 510 RAKAKEMGPVKMIK 523
           R KAK+MGPVK  K
Sbjct: 550 RDKAKKMGPVKKSK 563

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556322|ref|XP_002519195.1| AMP dependent ligase, putative [Ricinus communis] gi|223541510|gb|EEF43059.1| AMP dependent ligase, putative [Ricinus communis]

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/521 (74%), Positives = 442/521 (84%), Gaps = 5/521 (0%)

Query: 3   QSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 62
           Q+  R  RL     +  + F S+    V++IAPNVPAMYEA FG PMAGAV+N +NIRLN
Sbjct: 49  QTYKRCRRLASALTNHSVGFGST----VAIIAPNVPAMYEAHFGVPMAGAVVNCVNIRLN 104

Query: 63  ATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE 122
           A+ VAF+L H+ S VV+VDQEFFSLAEEAL+++ A SE   K   LIVI D+SCD K L+
Sbjct: 105 ASTVAFLLGHSKSEVVMVDQEFFSLAEEALEIL-AKSESSFKPALLIVIADKSCDPKSLK 163

Query: 123 YALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSL 182
           +AL RGAIEYEKFLE+GDPEFAWK PEDEWQSIALGYTSGTTASPKGVV+SHRGAYLMSL
Sbjct: 164 HALGRGAIEYEKFLESGDPEFAWKQPEDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSL 223

Query: 183 NGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVT 242
           +  LIWGMNEGAV+LWTLPMFH NGW +TWSLAALCGT+ICLRQVTAKAVY+AIA +GV+
Sbjct: 224 SNPLIWGMNEGAVYLWTLPMFHCNGWCFTWSLAALCGTNICLRQVTAKAVYSAIANNGVS 283

Query: 243 HFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTE 302
           HFC APVVLN I NA  E+TILPL  +V+V TAGA PPPS+LFAMS+KGFR+THTYGL+E
Sbjct: 284 HFCGAPVVLNTIVNAPKEETILPLPRIVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSE 343

Query: 303 LTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEI 362
             GP++VCAWKPEWDS P   QARLNARQGVR I L+GLDV+D +T +PVPADGKTIGEI
Sbjct: 344 TYGPSTVCAWKPEWDSQPPIVQARLNARQGVRYIGLEGLDVVDPKTMKPVPADGKTIGEI 403

Query: 363 VMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISS 422
           VMRG+ VMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNY+EIKDR KD+IISGGENISS
Sbjct: 404 VMRGNIVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYMEIKDRSKDIIISGGENISS 463

Query: 423 VEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKM 482
           +EVE +LY HP V EA+VVARPDE+WGESPCAFVTLKP  +  D+  LAE++ KF R+KM
Sbjct: 464 LEVENILYTHPAVYEASVVARPDEQWGESPCAFVTLKPGVNRSDERYLAEELIKFSRSKM 523

Query: 483 PSYWVPKSVVFAALPKSATGKIQKHLLRAKAKEMGPVKMIK 523
           P+YWVPKSVVF  LPK+ATGKIQKH+LRA+AKEMGPVK  K
Sbjct: 524 PAYWVPKSVVFGPLPKTATGKIQKHVLRARAKEMGPVKKSK 564

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854579|emb|CAN82780.1| hypothetical protein VITISV_017128 [Vitis vinifera]

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/494 (74%), Positives = 423/494 (85%)

Query: 30  VSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAE 89
           V++IAPN+PAMYEA FG PM+GAV+N +NIRLNA  +AF+L H+S+AVV+VDQEFF LAE
Sbjct: 73  VAIIAPNIPAMYEAHFGVPMSGAVVNCVNIRLNAPTIAFLLEHSSAAVVMVDQEFFPLAE 132

Query: 90  EALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPE 149
           EALK+    S+   K P LIVI DESCD K LEYAL +G IEYE+FLETGDPEFAWKPP+
Sbjct: 133 EALKIWSGKSKNDFKPPLLIVIADESCDPKGLEYALRKGVIEYEQFLETGDPEFAWKPPQ 192

Query: 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS 209
           DEWQSIALGYTSGTTASPKGVV+ HRGAY+M+L GAL+WGMNEGAV+LWTLPMFH NGW 
Sbjct: 193 DEWQSIALGYTSGTTASPKGVVLHHRGAYIMALTGALVWGMNEGAVYLWTLPMFHCNGWC 252

Query: 210 YTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 269
           +TW+LAALCGT+ICLRQV  KA+Y AIA  GVTH CAAPVVLN+I NA   +TILPL  V
Sbjct: 253 FTWTLAALCGTNICLRQVATKAIYQAIANDGVTHLCAAPVVLNSIVNAPKSETILPLPRV 312

Query: 270 VNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 329
           V+V TAGA PPPS+LFAMSQ+GFR+THTYGL+E  GP++VCAWKPEWD LP ETQARLNA
Sbjct: 313 VHVMTAGAAPPPSVLFAMSQQGFRVTHTYGLSETYGPSTVCAWKPEWDELPPETQARLNA 372

Query: 330 RQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF 389
           RQGV  I L+GLDV+     +PVPADG TIGEIVMRG+ VMKGYLKNPKANEE FANGWF
Sbjct: 373 RQGVXYIGLEGLDVVSTTDMKPVPADGTTIGEIVMRGNTVMKGYLKNPKANEETFANGWF 432

Query: 390 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 449
           HSGDL VKHPD YI++KDR KD+IISGGENISSVEVE  +YLHP VLEA+VVARPD+RWG
Sbjct: 433 HSGDLGVKHPDGYIQLKDRSKDIIISGGENISSVEVENAVYLHPAVLEASVVARPDDRWG 492

Query: 450 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLL 509
           ESPCAFVTLKP  D  D+ +LAED+ KFCR+K+P+YW+PKSVVF  LPK+ATGKIQKHLL
Sbjct: 493 ESPCAFVTLKPGVDRSDERRLAEDIMKFCRSKLPAYWIPKSVVFGPLPKTATGKIQKHLL 552

Query: 510 RAKAKEMGPVKMIK 523
           RA+ KEMGP+K  K
Sbjct: 553 RARTKEMGPLKKSK 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431902|ref|XP_002276533.1| PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera]

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/494 (74%), Positives = 425/494 (86%)

Query: 30  VSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAE 89
           V++IAPN+PAMYEA FG PM+GAV+N +NIRLNA  +AF+L H+S+AVV+VDQEFF LAE
Sbjct: 73  VAIIAPNIPAMYEAHFGVPMSGAVVNCVNIRLNAPTIAFLLEHSSAAVVMVDQEFFPLAE 132

Query: 90  EALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPE 149
           EALK+    S+   K P LIVI DESCD K LEYAL +G IEYE+FLETGDPEFAWKPP+
Sbjct: 133 EALKIWSGKSKNDFKPPLLIVIADESCDPKGLEYALRKGVIEYEQFLETGDPEFAWKPPQ 192

Query: 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS 209
           DEWQSIALGYTSGTTASPKGVV+ HRGAY+M+L+GAL+WGMNEGAV+LWTLPMFH NGW 
Sbjct: 193 DEWQSIALGYTSGTTASPKGVVLHHRGAYVMALSGALVWGMNEGAVYLWTLPMFHCNGWC 252

Query: 210 YTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 269
           +TW+LAALCGT+ICLRQV  KA+Y AIA  GVTH CAAPVVLN+I NA   +TILPL  V
Sbjct: 253 FTWTLAALCGTNICLRQVATKAIYQAIANDGVTHLCAAPVVLNSIVNAPKSETILPLPRV 312

Query: 270 VNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 329
           V+V TAGA PPPS+LFAMSQ+GFR+THTYGL+E  GP++VCAWKPEWD LP ETQARLNA
Sbjct: 313 VHVMTAGAAPPPSVLFAMSQQGFRVTHTYGLSETYGPSTVCAWKPEWDELPPETQARLNA 372

Query: 330 RQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF 389
           RQGVR I L+GLDV+     +PVPADG TIGEIVMRG+ VMKGYLKNPKANEE FANGWF
Sbjct: 373 RQGVRYIGLEGLDVVSTTDMKPVPADGTTIGEIVMRGNTVMKGYLKNPKANEETFANGWF 432

Query: 390 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 449
           HSGDL VKHPD YI++KDR KD+IISGGENISSVE+E  +YLHP VLEA+VVARPD+RWG
Sbjct: 433 HSGDLGVKHPDGYIQLKDRSKDIIISGGENISSVEIENAVYLHPAVLEASVVARPDDRWG 492

Query: 450 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLL 509
           ESPCAFVTLKP  D  D+ +LAED+ KFCR+++P+YW+PKSVVF  LPK+ATGKIQKHLL
Sbjct: 493 ESPCAFVTLKPGVDRSDERRLAEDIMKFCRSRLPAYWIPKSVVFGPLPKTATGKIQKHLL 552

Query: 510 RAKAKEMGPVKMIK 523
           RA+AKEMG +K  K
Sbjct: 553 RARAKEMGTLKKSK 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431900|ref|XP_002276434.1| PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera]

 Score =  791 bits (2044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/494 (74%), Positives = 423/494 (85%)

Query: 30  VSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAE 89
           V++IAPN+PA YEA FG PM+GAV+N +NIRLNA  +AF+L H+S+AVV+VDQEFF LAE
Sbjct: 73  VAIIAPNIPAKYEAHFGVPMSGAVVNCVNIRLNAPTIAFLLEHSSAAVVMVDQEFFPLAE 132

Query: 90  EALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPE 149
           EALK+    S+   K P LIVI DESCD K LEYAL +G IEYE+FLETGDPEFAWKPP+
Sbjct: 133 EALKIWSDKSKNDFKPPLLIVIADESCDPKALEYALRKGVIEYEQFLETGDPEFAWKPPQ 192

Query: 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS 209
           DEWQSIALGYTSGTTASPKGVV+ HRGAY+M+L GAL+WGMNEGAV+LWTLPMFH NGW 
Sbjct: 193 DEWQSIALGYTSGTTASPKGVVLHHRGAYIMALTGALVWGMNEGAVYLWTLPMFHCNGWC 252

Query: 210 YTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 269
           +TW+LAALCGT+ICLRQV  KA+Y AIA  GVTH CAAPVVLN+I NA   +TILPL  V
Sbjct: 253 FTWTLAALCGTNICLRQVETKAIYQAIANDGVTHLCAAPVVLNSIVNAPKSETILPLPRV 312

Query: 270 VNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 329
           V+V TAGA PPPS+LFAMSQ+GFR+THTYGL+E  GP++VCAWKPEWD LP ETQARLNA
Sbjct: 313 VHVMTAGAAPPPSVLFAMSQQGFRVTHTYGLSETYGPSTVCAWKPEWDELPPETQARLNA 372

Query: 330 RQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF 389
           RQGV+ I L+GLDV+     +PVPADG TIGEIVMRG+ VMKGYLKNPKANEE FANGWF
Sbjct: 373 RQGVQYIGLEGLDVVSTTDMKPVPADGTTIGEIVMRGNTVMKGYLKNPKANEETFANGWF 432

Query: 390 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 449
           HSGDL VKHPD YI++KDR KD+IISGGENISSVEVE  +YLHP VLEA+VVARPD+RWG
Sbjct: 433 HSGDLGVKHPDGYIQLKDRSKDIIISGGENISSVEVENAVYLHPAVLEASVVARPDDRWG 492

Query: 450 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLL 509
           ESPCAFVTLKP  D  D+ +LAED+ KFCR+K+P+YW+PKSVVF  LPK+ATGKIQKHLL
Sbjct: 493 ESPCAFVTLKPGVDRSDERRLAEDIMKFCRSKLPAYWIPKSVVFGPLPKTATGKIQKHLL 552

Query: 510 RAKAKEMGPVKMIK 523
           RA+ KEMGP+K  K
Sbjct: 553 RARTKEMGPLKKSK 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478905|ref|XP_003609738.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|355510793|gb|AES91935.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula]

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/496 (74%), Positives = 431/496 (86%), Gaps = 1/496 (0%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           + V+VIAPN+PA+YEA FG PMAGAV+N +NIRLNA+ +AF+L H +++VVIVDQEFFSL
Sbjct: 71  NTVAVIAPNIPALYEAHFGIPMAGAVINPVNIRLNASTIAFLLGHCTASVVIVDQEFFSL 130

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
           AEEALK+    ++   K+P LIVIGDE+CD K L YAL++GA+EYE FL +GDPE+ WKP
Sbjct: 131 AEEALKIWSDKTK-TFKSPILIVIGDENCDPKSLRYALSKGAVEYEDFLRSGDPEYNWKP 189

Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 207
           PEDEWQSIALGYTSGTTASPKGVV+ HRGAYLMSL+GALIWGMNEGAV+LWTLPMFH NG
Sbjct: 190 PEDEWQSIALGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMNEGAVYLWTLPMFHCNG 249

Query: 208 WSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 267
           W YTW+LAAL GT+ICLRQV+AKAVY AI  + VTHFCAAPVVLN+I NA  E+TILPL 
Sbjct: 250 WCYTWTLAALFGTNICLRQVSAKAVYEAIVKYKVTHFCAAPVVLNSIINAPAEETILPLP 309

Query: 268 NVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARL 327
           +VV+VNTAGA PPPS+L  MS++GFR+THTYGL+E  GP+  CAWKPEWDSLP E++ARL
Sbjct: 310 HVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPEWDSLPPESRARL 369

Query: 328 NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG 387
           +ARQGV+ I L+GLDV++ +T QPVPADGKT+GEIVMRG+ VMKGYLKNPKANEE+FANG
Sbjct: 370 HARQGVKYIALEGLDVVNTKTMQPVPADGKTVGEIVMRGNAVMKGYLKNPKANEESFANG 429

Query: 388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 447
           W+HSGDLAVKHPD YIEIKDR KD+IISG ENISSVEVE  LY HP +LE +VVARPDE+
Sbjct: 430 WYHSGDLAVKHPDGYIEIKDRSKDIIISGAENISSVEVENALYSHPAILETSVVARPDEK 489

Query: 448 WGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKH 507
           WGESPCAFVTLKP  D  ++ +L ED+ KFCRAKMP+YWVPKSVVF  LPK+ATGK+QKH
Sbjct: 490 WGESPCAFVTLKPGVDRSNEQRLVEDILKFCRAKMPTYWVPKSVVFGPLPKTATGKVQKH 549

Query: 508 LLRAKAKEMGPVKMIK 523
           LLRAKAKEMGP+K  K
Sbjct: 550 LLRAKAKEMGPLKTSK 565

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521803|ref|XP_003529540.1| PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max]

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/496 (75%), Positives = 428/496 (86%), Gaps = 1/496 (0%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           + V+VIAPN+PA+YEA FG PM+GAVLN +NIRLNA+ VAF+L H ++A VIVDQEFFSL
Sbjct: 73  NTVAVIAPNIPALYEAHFGIPMSGAVLNPVNIRLNASTVAFLLGHCTAAAVIVDQEFFSL 132

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
           AEEALK+    ++     P LIVI DE+CD K L+YAL +GAIEYE FL++GDPE+AWKP
Sbjct: 133 AEEALKIWSEKAK-TFSPPLLIVISDENCDPKALKYALGKGAIEYEDFLQSGDPEYAWKP 191

Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 207
           PEDEWQSIALGYTSGTTASPKGVV+ HRGAYLMSL+GALIWGM EGAV+LWTLPMFH NG
Sbjct: 192 PEDEWQSIALGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMTEGAVYLWTLPMFHCNG 251

Query: 208 WSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 267
           W YTW+LAALCGT+ICLRQVTAKAVY AIA + VTHFCAAPVVLN + NA  EDTILPL 
Sbjct: 252 WCYTWTLAALCGTNICLRQVTAKAVYGAIAKYKVTHFCAAPVVLNTLINAPAEDTILPLP 311

Query: 268 NVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARL 327
           +VV+VNTAGA PPPS+L  MS++GFR+THTYGL+E  GP+  CAWKPEW+SLP E QARL
Sbjct: 312 HVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPEWESLPPENQARL 371

Query: 328 NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG 387
           NARQGVR I L+GL V++ +T +PVPADGKT+GEIVMRG+ VMKGYLKNPKANEE FANG
Sbjct: 372 NARQGVRYIGLEGLAVVNTKTMEPVPADGKTVGEIVMRGNSVMKGYLKNPKANEETFANG 431

Query: 388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 447
           WFHSGDLAVKHPD YIEIKDR KD+IISG ENISSVE+E  LY HP +LEAAVVAR DE+
Sbjct: 432 WFHSGDLAVKHPDGYIEIKDRSKDIIISGAENISSVEIENTLYSHPSILEAAVVARADEK 491

Query: 448 WGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKH 507
           WGESPCAFVTLKP  D+ ++ ++ ED+ KF RAKMP+YWVPKSVVF ALPK+ATGKIQKH
Sbjct: 492 WGESPCAFVTLKPGVDKSNEQRIIEDILKFSRAKMPAYWVPKSVVFGALPKTATGKIQKH 551

Query: 508 LLRAKAKEMGPVKMIK 523
           +LRAKAKEMGPVK+ K
Sbjct: 552 ILRAKAKEMGPVKLSK 567

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564634|ref|XP_003550556.1| PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max]

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/496 (74%), Positives = 429/496 (86%), Gaps = 1/496 (0%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           + V+VIAPN+PA+YEA FG PMAGAVLN +NIRLNA+ +AF+L H ++A VIVDQEFFSL
Sbjct: 74  NTVAVIAPNIPAVYEAHFGIPMAGAVLNPLNIRLNASTIAFLLGHCTAAAVIVDQEFFSL 133

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
           AEEALK+    ++     P LIVIGDE+CD K L+YAL +GA++YE FL++GDPE+AWKP
Sbjct: 134 AEEALKIWSEKAK-TFSPPLLIVIGDENCDPKALKYALGKGAVDYEDFLQSGDPEYAWKP 192

Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 207
           PEDEWQSI+LGYTSGTTASPKGVV+ HRGAYLMSL+GALIWGM EGAV+LWTLPMFH NG
Sbjct: 193 PEDEWQSISLGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMTEGAVYLWTLPMFHCNG 252

Query: 208 WSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 267
           W YTW+LAALCGT+ICLRQVT KAVY AIA + V+HFCAAPVVLN I NA  EDTILPL 
Sbjct: 253 WCYTWTLAALCGTNICLRQVTPKAVYEAIAKYKVSHFCAAPVVLNTIVNAPAEDTILPLP 312

Query: 268 NVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARL 327
           +VV+VNTAGA PPPS+L  MS++GFR+THTYGL+E  GP+  CAWKPEW+SLP E +ARL
Sbjct: 313 HVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPEWESLPPENRARL 372

Query: 328 NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG 387
           NARQGVR + L+GLDV++ +T +PVPADGKT+GEIVMRG+ VMKGYLKNPKANEE FANG
Sbjct: 373 NARQGVRYVGLEGLDVVNTKTMEPVPADGKTVGEIVMRGNSVMKGYLKNPKANEETFANG 432

Query: 388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 447
           WFHSGDLAVKHPD YIEIKDR KD+IISG ENISSVE+E  LY HP +LEAAVVAR DE+
Sbjct: 433 WFHSGDLAVKHPDGYIEIKDRSKDIIISGAENISSVEIENTLYSHPAILEAAVVARADEK 492

Query: 448 WGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKH 507
           WGESPCAFVTLKP  D+ +  ++ ED+ KFC+AKMP+YWVPKSVVF ALPK+ATGKIQKH
Sbjct: 493 WGESPCAFVTLKPGVDKSNGQRIIEDILKFCKAKMPAYWVPKSVVFGALPKTATGKIQKH 552

Query: 508 LLRAKAKEMGPVKMIK 523
           +LRAKAKEMGPVK+ K
Sbjct: 553 ILRAKAKEMGPVKLSK 568

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074538|gb|ACJ85629.1| unknown [Medicago truncatula] gi|388493070|gb|AFK34601.1| unknown [Medicago truncatula]

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/496 (73%), Positives = 429/496 (86%), Gaps = 1/496 (0%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           + V+VIAPN+PA+YEA FG PMAGAV+N +NIRLNA+ +AF+L H +++VVIVDQEFFSL
Sbjct: 71  NTVAVIAPNIPALYEAHFGIPMAGAVINPVNIRLNASTIAFLLGHCTASVVIVDQEFFSL 130

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
           AEEALK+    ++   K+P LIVIGDE+CD K L YAL++GA+EYE FL +GDPE+ WKP
Sbjct: 131 AEEALKIWSDKTK-TFKSPILIVIGDENCDPKSLRYALSKGAVEYEDFLRSGDPEYNWKP 189

Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 207
           PEDEWQSIALGYTSGTTASPKGVV+ HRGAYLMSL+GALIWGMNEGAV+LWTLPMFH NG
Sbjct: 190 PEDEWQSIALGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMNEGAVYLWTLPMFHCNG 249

Query: 208 WSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 267
           W YTW+LAAL GT+ICLRQV+AKAVY AI  + VTHFCAAPVVLN+I NA  E+TILPL 
Sbjct: 250 WCYTWTLAALFGTNICLRQVSAKAVYEAIVKYKVTHFCAAPVVLNSIINAPAEETILPLP 309

Query: 268 NVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARL 327
           +VV+VNTAGA PPPS+L  MS++GFR+THTYGL+E  GP+  CAWKPEWD LP E++ARL
Sbjct: 310 HVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPEWDPLPPESRARL 369

Query: 328 NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG 387
           +ARQGV+ I L+GLDV++ +T QPVPADGKT+GEIVMRG+ VMKGYLKNPKANEE+FANG
Sbjct: 370 HARQGVKYIALEGLDVVNTKTMQPVPADGKTVGEIVMRGNAVMKGYLKNPKANEESFANG 429

Query: 388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 447
           W+HSGDLAVKHPD YIEIKDR KD+IISG ENISSVEVE  LY HP +LE +VVARPDE+
Sbjct: 430 WYHSGDLAVKHPDGYIEIKDRSKDIIISGAENISSVEVENALYSHPAILETSVVARPDEK 489

Query: 448 WGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKH 507
           WGESPCAFVTLKP  D  ++ +L ED+ KFCR KMP+YWVPKSVVF  LPK+ATGK+QKH
Sbjct: 490 WGESPCAFVTLKPGVDRSNEQRLVEDILKFCRTKMPTYWVPKSVVFGPLPKTATGKVQKH 549

Query: 508 LLRAKAKEMGPVKMIK 523
           LLRAKAKEMGP+K  K
Sbjct: 550 LLRAKAKEMGPLKTSK 565

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	526
TAIR|locus:2086122	569	AAE7 "acyl-activating enzyme 7	0.925	0.855	0.726	3.3e-198
TIGR_CMR|SPO_0677	542	SPO_0677 "AMP-binding protein"	0.885	0.859	0.545	4.1e-136
TAIR|locus:2030407	556	AAE1 "acyl activating enzyme 1	0.899	0.850	0.515	8.4e-129
TAIR|locus:2171357	550	AT5G16340 [Arabidopsis thalian	0.897	0.858	0.506	5.3e-127
UNIPROTKB|Q47WB3	541	CPS_4259 "AMP-binding protein"	0.884	0.859	0.509	8.7e-127
TIGR_CMR|CPS_4259	541	CPS_4259 "AMP-binding protein"	0.884	0.859	0.509	8.7e-127
TAIR|locus:2171402	552	AAE5 "acyl activating enzyme 5	0.906	0.864	0.490	7.8e-126
TAIR|locus:2057249	603	AT2G17650 [Arabidopsis thalian	0.910	0.794	0.498	4.3e-125
TAIR|locus:2027012	549	AT1G21530 [Arabidopsis thalian	0.895	0.857	0.484	2.1e-123
TAIR|locus:2027032	550	AT1G21540 [Arabidopsis thalian	0.899	0.86	0.485	1.5e-122

TAIR|locus:2086122 AAE7 "acyl-activating enzyme 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1919 (680.6 bits), Expect = 3.3e-198, P = 3.3e-198
 Identities = 354/487 (72%), Positives = 412/487 (84%)

Query:    33 IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 92
             IAPN+PAMYEA FG PM GAVLN +NIRLNA  VAF+LSH+ S+V++VDQEFF+LAE++L
Sbjct:    78 IAPNIPAMYEAHFGVPMCGAVLNCVNIRLNAPTVAFLLSHSQSSVIMVDQEFFTLAEDSL 137

Query:    93 KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW 152
             ++ME  +    K P LIVIGD +C  + L  AL++GAIEYE FL TGDP + W+PP DEW
Sbjct:   138 RLMEEKAGSSFKRPLLIVIGDHTCAPESLNRALSKGAIEYEDFLATGDPNYPWQPPADEW 197

Query:   153 QSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 212
             QSIALGYTSGTTASPKGVV+ HRGAY+M+L+  LIWGM +GAV+LWTLPMFH NGW + W
Sbjct:   198 QSIALGYTSGTTASPKGVVLHHRGAYIMALSNPLIWGMQDGAVYLWTLPMFHCNGWCFPW 257

Query:   213 SLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNV 272
             SLA L GTSICLRQVTAK VY+ IA + VTHFCAAPVVLNAI NA  EDTILPL + V+V
Sbjct:   258 SLAVLSGTSICLRQVTAKEVYSMIAKYKVTHFCAAPVVLNAIVNAPKEDTILPLPHTVHV 317

Query:   273 NTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQG 332
              TAGA PPPS+LF+M+QKGFR+ HTYGL+E  GP++VCAWKPEWDSLP ETQA+LNARQG
Sbjct:   318 MTAGAAPPPSVLFSMNQKGFRVAHTYGLSETYGPSTVCAWKPEWDSLPPETQAKLNARQG 377

Query:   333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSG 392
             VR   ++ LDVID +T +PVPADGKT GEIV RG+ VMKGYLKNP+AN+E FA GWFHSG
Sbjct:   378 VRYTGMEQLDVIDTQTGKPVPADGKTAGEIVFRGNMVMKGYLKNPEANKETFAGGWFHSG 437

Query:   393 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 452
             D+AVKHPDNYIEIKDR KDVIISGGENISSVEVE V+Y HP VLEA+VVARPDERW ESP
Sbjct:   438 DIAVKHPDNYIEIKDRSKDVIISGGENISSVEVENVVYHHPAVLEASVVARPDERWQESP 497

Query:   453 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRAK 512
             CAFVTLK + ++ D+ KLA+D+ KFCR K+P+YWVPKSVVF  LPK+ATGKIQKH+LR K
Sbjct:   498 CAFVTLKSDYEKHDQNKLAQDIMKFCREKLPAYWVPKSVVFGPLPKTATGKIQKHILRTK 557

Query:   513 AKEMGPV 519
             AKEMGPV
Sbjct:   558 AKEMGPV 564

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016208 "AMP binding" evidence=ISS

GO:0003987 "acetate-CoA ligase activity" evidence=IDA

GO:0006083 "acetate metabolic process" evidence=IDA

GO:0019605 "butyrate metabolic process" evidence=IDA

GO:0047760 "butyrate-CoA ligase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0006097 "glyoxylate cycle" evidence=IDA

TIGR_CMR|SPO_0677 SPO_0677 "AMP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
 Identities = 264/484 (54%), Positives = 325/484 (67%)

Query:    33 IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 92
             IA N+P MYEA FG PMAGAVLN+IN RL+A ++AFILSHA + V+IVD EF  +  +AL
Sbjct:    77 IAANIPEMYEAHFGVPMAGAVLNAINTRLDAPIIAFILSHAEARVLIVDPEFSEVVRDAL 136

Query:    93 KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW 152
               ++         P L+V+  E             G + Y+  L  GDP+F W  P DEW
Sbjct:   137 AQIDR--------PDLLVVDIED---PSFAGGAPVGTLSYDALLAEGDPDFDWSLPGDEW 185

Query:   153 QSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 212
              +IAL YTSGTT +PKGVV  HRGA L + +  L WGM + AV+LWTLPMFH NGW + W
Sbjct:   186 DAIALNYTSGTTGNPKGVVYHHRGAALNATSNILTWGMPQHAVYLWTLPMFHCNGWCFPW 245

Query:   213 SLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNV 272
             ++AA  G S+CLR V  + +Y A     VTHFC AP+VLN +ANA P D +    + + V
Sbjct:   246 TMAANAGVSVCLRAVRDEPIYRAFREEKVTHFCGAPIVLNMLANA-P-DHMKDFDHQIKV 303

Query:   273 NTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQG 332
              TAGAPPP +++  M   G  +TH YGLTE  GP+ VCAWK EWD  P   +A L  RQG
Sbjct:   304 MTAGAPPPAAVIEKMEAMGVDVTHVYGLTETYGPSVVCAWKEEWDGRPGAERAALKVRQG 363

Query:   333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSG 392
             VR + L GL V D  T +PVPADG+T+GEI M+G+ VMKGYLKNP A + AF  GWF SG
Sbjct:   364 VRYVALSGLMVADPETLEPVPADGETMGEIFMQGNIVMKGYLKNPDATDRAFRGGWFASG 423

Query:   393 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 452
             DL V HPD YI +KDR KD+IISGGENISSVEVE VLY HP V+EAAVVARPDE+WGE+P
Sbjct:   424 DLGVMHPDGYIALKDRSKDIIISGGENISSVEVEDVLYKHPAVMEAAVVARPDEKWGETP 483

Query:   453 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRAK 512
             CAFV LKP    ++    A D+   CRA M  +  PK+VVF  LPK++TGKIQK LLR +
Sbjct:   484 CAFVELKP-GQSVE----AADLIAHCRANMAHFKAPKTVVFGELPKTSTGKIQKFLLRER 538

Query:   513 AKEM 516
             A+ +
Sbjct:   539 ARAL 542

GO:0008152 "metabolic process" evidence=ISS

GO:0016208 "AMP binding" evidence=ISS

TAIR|locus:2030407 AAE1 "acyl activating enzyme 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1264 (450.0 bits), Expect = 8.4e-129, P = 8.4e-129
 Identities = 250/485 (51%), Positives = 329/485 (67%)

Query:    33 IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 92
             +APNVPAM E  FG PMAGA+L ++NIR ++++VA +L H+ + V+  D +F  +AE A 
Sbjct:    72 LAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQFLQIAEGAC 131

Query:    93 KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW 152
             +++  +++G  K P L++I +    S   +   +   +EYE  +  G  +F    P DE 
Sbjct:   132 EIL--SNKGD-KVPILVLIPEPLTQSVSRKKR-SEEMMEYEDVVAMGKSDFEVIRPTDEC 187

Query:   153 QSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 212
              +I++ YTSGTT+SPKGVV SHRGAYL SL   L+  M+    +LWT PMFH NGW   W
Sbjct:   188 DAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNPMFHCNGWCLLW 247

Query:   213 SLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNV 272
              + A+ GT+ICLR VTAKA++  I+ H VTH   AP +LN I NA PE    PL   V+ 
Sbjct:   248 GVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIINA-PESEQKPLPGKVSF 306

Query:   273 NTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQG 332
              T  APPP  ++F M + GF + H+YGLTE  GP ++C WKPEWDSLP E QA++ ARQG
Sbjct:   307 ITGAAPPPAHVIFKMEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKMKARQG 366

Query:   333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSG 392
             V  + L+ + V D  T + +PADG T+GE+V RG+ VM GYLKNP+A +EAF  GWF SG
Sbjct:   367 VNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKGGWFWSG 426

Query:   393 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 452
             DL VKHPD YIE+KDR KD+IISGGENISS+EVE  L+ HP VLEAAVVARPDE WGE+ 
Sbjct:   427 DLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPDEYWGETA 486

Query:   453 CAFVTLKPEADELDKGKL-AEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRA 511
             CAFV LK      D  K  AE++  +CR ++P Y  P+S+VF  LPK++TGK+QK +LR 
Sbjct:   487 CAFVKLK------DGSKASAEELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRT 540

Query:   512 KAKEM 516
             KAK +
Sbjct:   541 KAKAL 545

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016208 "AMP binding" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2171357 AT5G16340 [Arabidopsis thaliana (taxid:3702)]

 Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
 Identities = 247/488 (50%), Positives = 326/488 (66%)

Query:    33 IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 92
             ++PN PAMYE QF  PM+GA+LN+IN RL+A  V+ +L H  S ++ VD     LA EA+
Sbjct:    71 LSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDVFSVDLAVEAV 130

Query:    93 KMMEANSEGKLKTPHLIVIGDESCDSKQLEYA-LARGAIEYEKFLETGDPEFAWKPPEDE 151
              MM  +       P L+VI D+  +    + A L++ +  Y+  +E GDP F W  PE E
Sbjct:   131 SMMTTDP------PILVVIADKEEEGGVADVADLSKFSYTYDDLIERGDPGFKWIRPESE 184

Query:   152 WQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT 211
             W  + L YTSGTT++PKGVV  HRG ++MS++  + W + +  V+LWTLP+FH NGW+  
Sbjct:   185 WDPVVLNYTSGTTSAPKGVVHCHRGIFVMSVDSLIDWAVPKNPVYLWTLPIFHSNGWTNP 244

Query:   212 WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 271
             W +AA+ GT++CLR+  A  +Y  I  HGVTH C APVVLN ++ A+ E    PL + VN
Sbjct:   245 WGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLS-ATQESQ--PLNHPVN 301

Query:   272 VNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQ 331
             + TAG+PPP ++L      GF I+H YGLTE  G    CAWKP+W+ LP   +ARL ARQ
Sbjct:   302 ILTAGSPPPATVLLRAESIGFVISHGYGLTETAGVIVSCAWKPKWNHLPASDRARLKARQ 361

Query:   332 GVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHS 391
             GVRT+    +DV+D  +   V  +G+T+GEIVMRGS VM GYLK+P   E+A  NGWF++
Sbjct:   362 GVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTEKALKNGWFYT 421

Query:   392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 451
             GD+ V H D Y+EIKDR KD+II+GGEN+SSVEVE VLY  P V E AVVARPDE WGE+
Sbjct:   422 GDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTIPAVNEVAVVARPDEFWGET 481

Query:   452 PCAFVTLKPEADELDKGK-LAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLL 509
             PCAFV+LK        GK   E++ ++CR KMP Y VPK+V F   LPKS+TGK+ K +L
Sbjct:   482 PCAFVSLKNGFS----GKPTEEELMEYCRKKMPKYMVPKTVSFMDELPKSSTGKVTKFVL 537

Query:   510 RAKAKEMG 517
             R  AK+MG
Sbjct:   538 RDIAKKMG 545

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q47WB3 CPS_4259 "AMP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 1245 (443.3 bits), Expect = 8.7e-127, P = 8.7e-127
 Identities = 246/483 (50%), Positives = 324/483 (67%)

Query:    33 IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 92
             IAPN+   +E  FG PM+GAVLNSIN RL+A  +AFIL HA + V+I D+EF  + ++AL
Sbjct:    77 IAPNISEHFEVHFGVPMSGAVLNSINTRLDAEAIAFILVHAETKVLITDKEFSPIVKKAL 136

Query:    93 KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW 152
             +M+          P +I I D + +  QL      G++ Y++ LE GD +F    P++EW
Sbjct:   137 RMIPHK-------PLVIDIDDPNFNEGQLI-----GSLTYDQLLEEGDSDFESIRPKNEW 184

Query:   153 QSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 212
              +I+L YTSGTT  PKGVV  +RGAYL +++  + W M E  V+LWTLPMFH NGW + W
Sbjct:   185 DAISLNYTSGTTGDPKGVVYHYRGAYLNAVSNVMSWSMGEHPVYLWTLPMFHCNGWCFPW 244

Query:   213 SLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNV 272
             S+AA  GTS+ LR V A+ ++  I +  V +FC AP+VLN +  A P      + + V V
Sbjct:   245 SIAATAGTSVSLRHVRAEPIFNLIRSEKVGYFCGAPIVLNMLNGAEPS-LKADINHPVKV 303

Query:   273 NTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQG 332
              TAGAPPP S++  M   GF++THTYGLTE  GP+ VCAW  EW+    E QA+L +RQG
Sbjct:   304 MTAGAPPPASVIEGMEASGFKVTHTYGLTETYGPSVVCAWHDEWNEESPEKQAKLKSRQG 363

Query:   333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSG 392
             VR+  LD L V D  T +P+P DG+++GEI MRG+ VMKGYLKNP   + AF  GW HSG
Sbjct:   364 VRSPMLDQLMVADPETLEPMPKDGESVGEIFMRGNLVMKGYLKNPSTTQAAFDGGWLHSG 423

Query:   393 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 452
             D+AV H D YIEIKDR KDVIISGGENISSVEVE +LY HP V E AVVA+ D++WGE+P
Sbjct:   424 DIAVWHSDGYIEIKDRSKDVIISGGENISSVEVEDILYRHPKVQEVAVVAKKDDKWGETP 483

Query:   453 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRAK 512
             CAF+T  P  +  ++    E +S FCR  M  +  PK+++F  LPK++TGKIQK +LR +
Sbjct:   484 CAFITPMPNVEITEQ----EMIS-FCRDNMAHFKAPKTIIFGELPKTSTGKIQKFVLRQQ 538

Query:   513 AKE 515
             A E
Sbjct:   539 ANE 541

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_4259 CPS_4259 "AMP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 1245 (443.3 bits), Expect = 8.7e-127, P = 8.7e-127
 Identities = 246/483 (50%), Positives = 324/483 (67%)

Query:    33 IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 92
             IAPN+   +E  FG PM+GAVLNSIN RL+A  +AFIL HA + V+I D+EF  + ++AL
Sbjct:    77 IAPNISEHFEVHFGVPMSGAVLNSINTRLDAEAIAFILVHAETKVLITDKEFSPIVKKAL 136

Query:    93 KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW 152
             +M+          P +I I D + +  QL      G++ Y++ LE GD +F    P++EW
Sbjct:   137 RMIPHK-------PLVIDIDDPNFNEGQLI-----GSLTYDQLLEEGDSDFESIRPKNEW 184

Query:   153 QSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 212
              +I+L YTSGTT  PKGVV  +RGAYL +++  + W M E  V+LWTLPMFH NGW + W
Sbjct:   185 DAISLNYTSGTTGDPKGVVYHYRGAYLNAVSNVMSWSMGEHPVYLWTLPMFHCNGWCFPW 244

Query:   213 SLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNV 272
             S+AA  GTS+ LR V A+ ++  I +  V +FC AP+VLN +  A P      + + V V
Sbjct:   245 SIAATAGTSVSLRHVRAEPIFNLIRSEKVGYFCGAPIVLNMLNGAEPS-LKADINHPVKV 303

Query:   273 NTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQG 332
              TAGAPPP S++  M   GF++THTYGLTE  GP+ VCAW  EW+    E QA+L +RQG
Sbjct:   304 MTAGAPPPASVIEGMEASGFKVTHTYGLTETYGPSVVCAWHDEWNEESPEKQAKLKSRQG 363

Query:   333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSG 392
             VR+  LD L V D  T +P+P DG+++GEI MRG+ VMKGYLKNP   + AF  GW HSG
Sbjct:   364 VRSPMLDQLMVADPETLEPMPKDGESVGEIFMRGNLVMKGYLKNPSTTQAAFDGGWLHSG 423

Query:   393 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 452
             D+AV H D YIEIKDR KDVIISGGENISSVEVE +LY HP V E AVVA+ D++WGE+P
Sbjct:   424 DIAVWHSDGYIEIKDRSKDVIISGGENISSVEVEDILYRHPKVQEVAVVAKKDDKWGETP 483

Query:   453 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRAK 512
             CAF+T  P  +  ++    E +S FCR  M  +  PK+++F  LPK++TGKIQK +LR +
Sbjct:   484 CAFITPMPNVEITEQ----EMIS-FCRDNMAHFKAPKTIIFGELPKTSTGKIQKFVLRQQ 538

Query:   513 AKE 515
             A E
Sbjct:   539 ANE 541

GO:0008150 "biological_process" evidence=ND

GO:0016208 "AMP binding" evidence=ISS

TAIR|locus:2171402 AAE5 "acyl activating enzyme 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
 Identities = 241/491 (49%), Positives = 324/491 (65%)

Query:    33 IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 92
             ++PN PAMYE QF  PM+GA+LN+IN RL+A  V+ +L H  S ++ VD     LA EA+
Sbjct:    71 LSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCGSKLLFVDVFSVDLAVEAI 130

Query:    93 KMMEANSEGKLKTPHLIVIGDESCDSKQLEYA-LARGAIEYEKFLETGDPEFAWKPPEDE 151
              MM  +       P L+ I D+  +    + A   + +  Y+  +  GD +F W  PE E
Sbjct:   131 SMMTTDP------PILVFIADKEEEGGDADVADRTKFSYTYDDLIHRGDLDFKWIRPESE 184

Query:   152 WQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT 211
             W  + L YTSGTT++PKGVV  HRG ++MS++  + W + +  V+LWTLP+FH NGWSY 
Sbjct:   185 WDPVVLNYTSGTTSAPKGVVHCHRGIFVMSIDSLIDWTVPKNPVYLWTLPIFHANGWSYP 244

Query:   212 WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 271
             W +AA+ GT++CLR+  A  +Y  I  HGVTH C APVVLN ++ A+ E    PL   VN
Sbjct:   245 WGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLS-ATNE--FQPLNRPVN 301

Query:   272 VNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQ 331
             + TAGAPPP ++L      GF I+H YGLTE  G    CAWKP+W+ LP   +ARL ARQ
Sbjct:   302 ILTAGAPPPAAVLLRAESIGFVISHGYGLTETAGLNVSCAWKPQWNRLPASDRARLKARQ 361

Query:   332 GVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHS 391
             GVRT+    +DV+D  + + V  +G+T+GEIVMRGS +M GYLK+P   E+A  NGWF++
Sbjct:   362 GVRTVGFTEIDVVDPESGRSVERNGETVGEIVMRGSSIMLGYLKDPVGTEKALKNGWFYT 421

Query:   392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 451
             GD+ V H D Y+EIKDR KD+II+GGEN+SSVEVE VLY +P V E AVVARPD  WGE+
Sbjct:   422 GDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTNPAVNEVAVVARPDVFWGET 481

Query:   452 PCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLR 510
             PCAFV+LK     L +     ++ ++CR KMP Y VPK+V F   LPK++TGK+ K +LR
Sbjct:   482 PCAFVSLK---SGLTQRPTEVEMIEYCRKKMPKYMVPKTVSFVDELPKTSTGKVMKFVLR 538

Query:   511 AKAKEMGPVKM 521
               AK+MG  ++
Sbjct:   539 EIAKKMGTTRL 549

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

TAIR|locus:2057249 AT2G17650 [Arabidopsis thaliana (taxid:3702)]

 Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
 Identities = 245/491 (49%), Positives = 323/491 (65%)

Query:    33 IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 92
             +APNVPAM+E  F  PMAG +L  +N RL+ + ++ +L+H+ + ++ VD +   +A  AL
Sbjct:   117 LAPNVPAMHELHFAVPMAGLILCPLNTRLDPSTLSVLLAHSEAKILFVDHQLLEIAHGAL 176

Query:    93 KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGA------IEYEKFLETGDPEFAWK 146
              ++ A S+   K+  L++I   + D    E + +  A       EYE  L++GD EF   
Sbjct:   177 DLL-AKSDKTRKSLKLVLISQSNDDDDSDEDSSSTFASKYSFDYEYETLLKSGDSEFEII 235

Query:   147 PPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGN 206
              P  EW  I++ YTSGTT+ PKGVV SHRGAYL SL    +  M+   V+LWT+PMFH N
Sbjct:   236 KPRCEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVFLHQMSVYPVYLWTVPMFHCN 295

Query:   207 GWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPL 266
             GW   W +AA  GT+ICLR+V+ K ++  IA H VTH   AP VLN I N +  +   PL
Sbjct:   296 GWCLVWGVAAQGGTNICLRKVSPKMIFKNIAMHKVTHMGGAPTVLNMIVNYTVTEH-KPL 354

Query:   267 TNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 326
              + V + T G+PP P +L  M + GF ++H YGLTE  GP + C WKPEWDSL  E + +
Sbjct:   355 PHRVEIMTGGSPPLPQILAKMEELGFNVSHLYGLTETYGPGTHCVWKPEWDSLSLEERTK 414

Query:   327 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN 386
             L ARQGV+ + L+GLDV D  T + VP DG T+GE++ RG+ VM GY K+ +A  +AF  
Sbjct:   415 LKARQGVQHLGLEGLDVKDPLTMETVPDDGLTMGEVMFRGNTVMSGYFKDIEATRKAFEG 474

Query:   387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 446
              WFHSGDLAVK+PD YIEIKDRLKDVIISGGENISSVEVE+VL  H  VLEAAVVARPD 
Sbjct:   475 DWFHSGDLAVKYPDGYIEIKDRLKDVIISGGENISSVEVERVLCSHQAVLEAAVVARPDH 534

Query:   447 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQK 506
              WG++PC FV LK   D +      E++  FCR  +P Y  PK++VF  +PK++TGK+QK
Sbjct:   535 HWGQTPCGFVKLKEGFDTIKP----EEIIGFCRDHLPHYMAPKTIVFGDIPKTSTGKVQK 590

Query:   507 HLLRAKAKEMG 517
             +LLR KA EMG
Sbjct:   591 YLLRKKADEMG 601

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2027012 AT1G21530 [Arabidopsis thaliana (taxid:3702)]

 Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
 Identities = 237/489 (48%), Positives = 327/489 (66%)

Query:    33 IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 92
             + PNVP++YE QF  PM+GA+LN+IN RL+A  ++ +L H+ S +V VD    SL  EA+
Sbjct:    73 VGPNVPSVYELQFAVPMSGAILNNINPRLDAHALSVLLRHSESRLVFVDHRSISLVLEAV 132

Query:    93 KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIE-YEKFLETGDPEFAWKPPEDE 151
              +   + +     PHL+++ D+    ++ + + A   ++ YE+ +E G+  F W  P+ E
Sbjct:   133 SLFTQHEK-----PHLVLLDDD----QENDSSSASDFLDTYEEIMERGNSRFKWIRPQTE 183

Query:   152 WQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT 211
             WQ + L YTSGTT+SPKGVV+SHR  ++++++  L W +    V+LWTLPMFH NGW YT
Sbjct:   184 WQPMVLNYTSGTTSSPKGVVLSHRAIFMLTVSSLLDWSVPNRPVYLWTLPMFHANGWGYT 243

Query:   212 WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 271
             W  AA+  T+IC R+V A  +Y  I  H VTH CAAP+VLN + N  P  T  PL N V 
Sbjct:   244 WGTAAVGATNICTRRVDAPTIYNLIDKHNVTHMCAAPMVLNMLINY-PLST--PLKNPVQ 300

Query:   272 VNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL-PFETQARLNAR 330
             V T+GAPPP +++      GF ++H+YGLTE +GP   CAWKP+WD L P E +ARL +R
Sbjct:   301 VMTSGAPPPATIISRAESLGFNVSHSYGLTETSGPVVSCAWKPKWDHLDPLE-RARLKSR 359

Query:   331 QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWF 389
             QGVRT+    +DV D +T + V  DG ++GEIV RGS VM GY K+P+        +GWF
Sbjct:   360 QGVRTLGFTEVDVRDRKTGKSVKHDGVSVGEIVFRGSSVMLGYYKDPQGTAACMREDGWF 419

Query:   390 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 449
             +SGD+ V H D Y+EIKDR KDVII GGENISS E+E VLY +P+V EAAVVA+PD+ WG
Sbjct:   420 YSGDIGVIHKDGYLEIKDRSKDVIICGGENISSAEIETVLYTNPVVKEAAVVAKPDKMWG 479

Query:   450 ESPCAFVTLKPEADELDKGKLAE-DVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKH 507
             E+PCAFV+LK + +      + E ++ +FC+ K+P Y VP+ V+F   LPK++TGKIQK 
Sbjct:   480 ETPCAFVSLKCDNNGDGSVPVTEREIREFCKTKLPKYMVPRKVIFQEELPKTSTGKIQKF 539

Query:   508 LLRAKAKEM 516
             LLR  AK +
Sbjct:   540 LLRQMAKTL 548

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2027032 AT1G21540 [Arabidopsis thaliana (taxid:3702)]

 Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
 Identities = 237/488 (48%), Positives = 317/488 (64%)

Query:    33 IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 92
             + PNVP++YE QF  PM+GA+LN+IN RL+A  ++ +L H+ S +V VD    S+  EA+
Sbjct:    73 VGPNVPSVYELQFAVPMSGAILNNINPRLDAHALSVLLRHSESKLVFVDPNSISVVLEAV 132

Query:    93 KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW 152
               M  N +     PHL+++ D+  D      A +     Y+  +E GD  F W  P+ EW
Sbjct:   133 SFMRQNEK-----PHLVLLDDDQEDGSLSPSAASDFLDTYQGVMERGDSRFKWIRPQTEW 187

Query:   153 QSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 212
             Q + L YTSGTT+SPKGVV+SHR  ++++++  L W      V+LWTLPMFH NGW YTW
Sbjct:   188 QPMILNYTSGTTSSPKGVVLSHRAIFMLTVSSLLDWHFPNRPVYLWTLPMFHANGWGYTW 247

Query:   213 SLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNV 272
               AA+  T++C R+V A  +Y  I  H VTH CAAP+VLN + N        PL N V V
Sbjct:   248 GTAAVGATNVCTRRVDAPTIYDLIDKHHVTHMCAAPMVLNMLTNYPSRK---PLKNPVQV 304

Query:   273 NTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL-PFETQARLNARQ 331
              TAGAPPP +++      GF + H YGLTE  GP   CAWK EWD L P E +ARL +RQ
Sbjct:   305 MTAGAPPPAAIISRAETLGFNVGHGYGLTETGGPVVSCAWKAEWDHLDPLE-RARLKSRQ 363

Query:   332 GVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFH 390
             GVRTI    +DV D RT + V  DG ++GEIV++G  VM GY K+P+        +GWF+
Sbjct:   364 GVRTIGFAEVDVRDPRTGKSVEHDGVSVGEIVLKGGSVMLGYYKDPEGTAACMREDGWFY 423

Query:   391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 450
             SGD+ V H D Y+E+KDR KDVII GGENISS EVE VLY +P+V EAAVVA+PD+ WGE
Sbjct:   424 SGDVGVIHEDGYLEVKDRSKDVIICGGENISSAEVETVLYTNPVVKEAAVVAKPDKMWGE 483

Query:   451 SPCAFVTLKPEADELDKGKLAE-DVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHL 508
             +PCAFV+LK +++    G + E ++ +FC+ ++P Y VP+ V+F   LPK++TGKIQK L
Sbjct:   484 TPCAFVSLKYDSN--GNGLVTEREIREFCKTRLPKYMVPRKVIFQEELPKTSTGKIQKFL 541

Query:   509 LRAKAKEM 516
             LR  AK +
Sbjct:   542 LRQMAKSL 549

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VZF1	AEE7_ARATH	6, ., 2, ., 1, ., 2	0.6982	0.9752	0.9015	yes	no
Q5SKN9	LCFCS_THET8	6, ., 2, ., 1, ., 3	0.3520	0.8802	0.8558	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	526
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	0.0
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	0.0
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	0.0
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	1e-173
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	1e-132
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-126
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	1e-118
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-117
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-103
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-88
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	5e-83
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-81
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	1e-77
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-76
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	9e-76
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-75
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	1e-74
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	4e-74
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	4e-74
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	3e-65
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	6e-65
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	1e-63
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	6e-62
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-61
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-61
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	3e-60
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	2e-58
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	4e-58
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	5e-57
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	6e-57
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	6e-56
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	8e-55
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	1e-54
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	8e-53
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	2e-51
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-51
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	9e-50
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-49
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	1e-49
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-49
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	3e-49
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	4e-49
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	8e-49
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	1e-48
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	4e-48
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	3e-47
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	5e-46
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	2e-45
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-44
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	9e-44
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	4e-42
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	9e-41
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-40
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-39
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	3e-39
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	3e-39
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	5e-39
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	5e-39
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	8e-38
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	5e-37
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	5e-36
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	6e-36
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	8e-36
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	1e-35
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	1e-35
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	2e-35
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	4e-35
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	6e-35
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	6e-35
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	1e-34
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	2e-34
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	5e-34
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	8e-34
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-33
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	3e-33
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	1e-32
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	1e-32
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	2e-32
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-32
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	7e-32
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-31
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	2e-31
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	1e-30
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	2e-30
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	6e-30
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	1e-29
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-29
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-29
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	3e-28
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	4e-28
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	8e-28
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	1e-27
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	2e-27
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	2e-27
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	6e-27
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-26
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-25
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	3e-24
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	3e-24
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	3e-24
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	4e-24
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	4e-24
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	9e-24
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	4e-23
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	4e-23
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	1e-22
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	2e-22
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-22
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	3e-22
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	3e-22
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	5e-22
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	1e-21
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-20
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	8e-20
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	9e-20
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	1e-19
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-19
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-18
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	1e-17
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	1e-17
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	6e-17
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	8e-17
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	2e-16
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	3e-16
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	3e-16
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-16
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	2e-15
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	7e-15
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-14
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-14
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	3e-14
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	3e-14
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	5e-14
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	8e-13
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	1e-12
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	4e-12
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	7e-12
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	9e-12
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	9e-12
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	1e-11
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	4e-11
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	7e-11
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	1e-10
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-10
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	4e-10
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	7e-10
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-09
TIGR03443	1389	TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh	1e-09
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	3e-09
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	5e-09
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	7e-09
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-08
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	3e-08
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	1e-07
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	1e-07
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-07
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	1e-07
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	2e-07
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	2e-07
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	3e-07
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	9e-07
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	1e-06
pfam13193	43	pfam13193, DUF4009, Domain of unknown function (DU	2e-06
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	4e-06
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	5e-06
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	6e-06
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	7e-06
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	8e-06
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	9e-06
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-05
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	2e-05
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	5e-05
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	6e-05
PLN03051	499	PLN03051, PLN03051, acyl-activating enzyme; Provis	6e-05
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-04
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	1e-04
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	2e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-04
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	2e-04
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	3e-04
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	3e-04
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	3e-04
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	5e-04
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	7e-04
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	9e-04
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.002
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.002
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	0.002
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	0.003
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	0.003

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score =  928 bits (2399), Expect = 0.0
 Identities = 381/496 (76%), Positives = 432/496 (87%)

Query: 25  SPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEF 84
            P   V+VIAPN+PAMYEA FG PMAGAV+N +NIRLNA  +AF+L H+ S VV+VDQEF
Sbjct: 68  GPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEF 127

Query: 85  FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFA 144
           F+LAEEALK++    +   K P LIVIGD +CD K L+YAL +GAIEYEKFLETGDPEFA
Sbjct: 128 FTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDPEFA 187

Query: 145 WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFH 204
           WKPP DEWQSIALGYTSGTTASPKGVV+ HRGAYLM+L+ ALIWGMNEGAV+LWTLPMFH
Sbjct: 188 WKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFH 247

Query: 205 GNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 264
            NGW +TW+LAALCGT+ICLRQVTAKA+Y+AIA +GVTHFCAAPVVLN I NA   +TIL
Sbjct: 248 CNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETIL 307

Query: 265 PLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQ 324
           PL  VV+V TAGA PPPS+LFAMS+KGFR+THTYGL+E  GP++VCAWKPEWDSLP E Q
Sbjct: 308 PLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQ 367

Query: 325 ARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 384
           ARLNARQGVR I L+GLDV+D +T +PVPADGKT+GEIVMRG+ VMKGYLKNPKANEEAF
Sbjct: 368 ARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF 427

Query: 385 ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 444
           ANGWFHSGDL VKHPD YIEIKDR KD+IISGGENISS+EVE V+Y HP VLEA+VVARP
Sbjct: 428 ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARP 487

Query: 445 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKI 504
           DERWGESPCAFVTLKP  D+ D+  LAED+ KFCR ++P+YWVPKSVVF  LPK+ATGKI
Sbjct: 488 DERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVFGPLPKTATGKI 547

Query: 505 QKHLLRAKAKEMGPVK 520
           QKH+LRAKAKEMGPVK
Sbjct: 548 QKHVLRAKAKEMGPVK 563

Length = 567

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  758 bits (1960), Expect = 0.0
 Identities = 278/487 (57%), Positives = 338/487 (69%), Gaps = 18/487 (3%)

Query: 25  SPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEF 84
              D+V+V+APN PAM EA FG PMAGAVL  +N RL+A  +AFIL+H+ + V+ VDQEF
Sbjct: 52  GKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEF 111

Query: 85  FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFA 144
            SLAEEAL ++                  ++        A      +YE  L  GDP+  
Sbjct: 112 LSLAEEALALLST------------KEIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDPL 159

Query: 145 WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFH 204
             PP+DEW  I+L YTSGTT +PKGVV +HRGAYL +L   + WGM +  V+LWTLPMFH
Sbjct: 160 PIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLWTLPMFH 219

Query: 205 GNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 264
            NGW + W++ A+ GT +CLR+V A A+Y  I  H VTH C AP VLN +ANA PE   L
Sbjct: 220 CNGWCFPWAITAVGGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNMLANA-PEADKL 278

Query: 265 PLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQ 324
           PL   V V TAGAPPPP+++  M + GF +TH YGLTE  GP +VC WKPEWD+LP E +
Sbjct: 279 PLPRPVRVMTAGAPPPPAVIKKMEELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEER 338

Query: 325 ARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 384
           ARL ARQGVR + L+ +DV+D  T + VP DGKTIGEIVMRG+ VMKGY KNP+A EEAF
Sbjct: 339 ARLKARQGVRYVGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAF 398

Query: 385 ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 444
           A GWFHSGDLAV HPD YIEIKDR KD+IISGGENISS+EVE VLY HP VLEAAVVARP
Sbjct: 399 AGGWFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARP 458

Query: 445 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKI 504
           DE+WGE+PCAFV LKP           E++ ++CR K+  + VPK+V F  LPK+ATGKI
Sbjct: 459 DEKWGETPCAFVVLKP-----GASVTEEELIEYCREKLAHFKVPKTVEFVELPKTATGKI 513

Query: 505 QKHLLRA 511
           QK +LR 
Sbjct: 514 QKFVLRE 520

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score =  734 bits (1896), Expect = 0.0
 Identities = 271/494 (54%), Positives = 346/494 (70%), Gaps = 17/494 (3%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V+V+ PN+PAM EA FG PMAGAVLN++N RL+A  +AF+L H  + V+IVD EF 
Sbjct: 67  RGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFA 126

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
            +A EAL ++          P  +VI     D  +       GA++YE FL +GDP+FAW
Sbjct: 127 EVAREALALLPG--------PKPLVIDV---DDPEYPGGRFIGALDYEAFLASGDPDFAW 175

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
             P DEW +IAL YTSGTT +PKGVV  HRGAYL +L+  L WGM +  V+LWTLPMFH 
Sbjct: 176 TLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHC 235

Query: 206 NGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP 265
           NGW + W++AA  GT++CLR+V  K ++  I  HGVTH+C AP+VL+A+ NA P +    
Sbjct: 236 NGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINA-PAEWRAG 294

Query: 266 LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQA 325
           + + V+   AGA PP +++  M + GF +TH YGLTE  GPA+VCAW+PEWD+LP + +A
Sbjct: 295 IDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERA 354

Query: 326 RLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
           +L ARQGVR    +G+ V+D  T QPVPADG+TIGEI+ RG+ VMKGYLKNPKA EEAFA
Sbjct: 355 QLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFA 414

Query: 386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 445
            GWFH+GDLAV HPD YI+IKDR KD+IISGGENISS+EVE VLY HP VL AAVVA+PD
Sbjct: 415 GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPD 474

Query: 446 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQ 505
            +WGE PCAFV LK  A         E++   CR  +  + VPK+VVF  LPK++TGKIQ
Sbjct: 475 PKWGEVPCAFVELKDGASA-----TEEEIIAHCREHLAGFKVPKAVVFGELPKTSTGKIQ 529

Query: 506 KHLLRAKAKEMGPV 519
           K +LR +AK +  +
Sbjct: 530 KFVLREQAKSLKAI 543

Length = 545

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score =  501 bits (1292), Expect = e-173
 Identities = 242/502 (48%), Positives = 315/502 (62%), Gaps = 18/502 (3%)

Query: 25  SPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEF 84
           + +D+VSV+APN PAMYE  F  PMAGAVLN IN RL+AT +A IL HA   ++ VD+ F
Sbjct: 62  TKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSF 121

Query: 85  FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFA 144
             LA E L ++ +         +L VI     D  +   +     ++YE  ++ G+P  +
Sbjct: 122 EPLAREVLHLLSSEDS----NLNLPVIFIHEIDFPKRPSS---EELDYECLIQRGEPTPS 174

Query: 145 WKPP----EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTL 200
                   +DE   I+L YTSGTTA PKGVV+SHRGAYL +L+  + W M    V+LWTL
Sbjct: 175 LVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTL 234

Query: 201 PMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE 260
           PMFH NGW++TW  AA  GTS+C+R VTA  +Y  I  H VTH C  P V N +   +  
Sbjct: 235 PMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSL 294

Query: 261 DTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLP 320
           D + P +  V+V T G+PPP +L+  + + GF++ H YGLTE TGP   C W+ EW+ LP
Sbjct: 295 D-LSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLP 353

Query: 321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
              Q  L ARQGV  + L  +DV +  T + VP DGKT+GEIV++GS +MKGYLKNPKA 
Sbjct: 354 ENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKAT 413

Query: 381 EEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 440
            EAF +GW ++GD+ V HPD ++EIKDR KD+IISGGENISSVEVE VLY +P VLE AV
Sbjct: 414 SEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAV 473

Query: 441 VARPDERWGESPCAFVTLK--PEADELDKGKLAE---DVSKFCRAKMPSYWVPKSVVF-A 494
           VA P   WGE+PCAFV L+      E    KL     D+ ++CR  +P +  P+ VVF  
Sbjct: 474 VAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQ 533

Query: 495 ALPKSATGKIQKHLLRAKAKEM 516
            LPK+  GKI K  LR  AK +
Sbjct: 534 ELPKNGNGKILKPKLRDIAKGL 555

Length = 579

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  393 bits (1011), Expect = e-132
 Identities = 172/496 (34%), Positives = 241/496 (48%), Gaps = 33/496 (6%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V+V   N     EA F  P  GAVL+ INIRL    +A+IL+ A   VV+VD EF 
Sbjct: 55  KGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFV 114

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
            L    L         +L T   +++  +   +            EYE+ L      F +
Sbjct: 115 PLLAAIL--------PQLPTVRTVIVEGDGPAAPLAPEVG-----EYEELLAAASDTFDF 161

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
               DE  + A+ YTSGTT  PKGVV+SHR  +L SL       ++   V+L  +PMFH 
Sbjct: 162 PDI-DENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHV 220

Query: 206 NGWSYTWSLAAL--CGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI 263
           + W       AL      +  R+   + +   I T  VT F A P +   +  A P    
Sbjct: 221 HAW--GLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKA-PRAYF 277

Query: 264 LPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFE 322
           +  +++  V   GA  PP+LL    +K G  +   YG+TE T P       PE       
Sbjct: 278 VDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTE-TSPVVSVLP-PEDQLPGQW 335

Query: 323 TQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 382
           T+ R     G R +      ++D   +  +P DG  +GEI++RG  +M+GY   P+A  E
Sbjct: 336 TKRR---SAG-RPLPGVEARIVDDDGD-ELPPDGGEVGEIIVRGPWLMQGYWNRPEATAE 390

Query: 383 AFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVA 442
               GW H+GD+     D Y+ I DR+KDVIISGGENI   E+E  LY HP V E AV+ 
Sbjct: 391 TIDGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIG 450

Query: 443 RPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSAT 501
            PDE+WGE P A V LKP A  LD    A+++  F R ++  + +PK + F   LP+++ 
Sbjct: 451 VPDEKWGERPVAVVVLKPGA-TLD----AKELRAFLRGRLAKFKLPKRIAFVDELPRTSV 505

Query: 502 GKIQKHLLRAKAKEMG 517
           GKI K +LR +  E  
Sbjct: 506 GKILKRVLREQYAEGK 521

Length = 521

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  378 bits (973), Expect = e-126
 Identities = 179/492 (36%), Positives = 249/492 (50%), Gaps = 31/492 (6%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
           P D V+ +A N     E  F  P  GAVL+++N RL+   +A+I++HA   V+ VD +F 
Sbjct: 49  PGDRVATLAWNTHRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFL 108

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
            L E     +            ++V  D       L          YE+ LE   PE+ W
Sbjct: 109 PLLEAIAPRLP-------TVKAVVVYDDADMPETSLP-----NVYAYEELLEEESPEYEW 156

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMF 203
            P  DE  +  L YTSGTT +PKGVV SHR   L +L  AL    G++E    L  +PMF
Sbjct: 157 -PELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTVLPVVPMF 215

Query: 204 HGNGWSYTWSLAALCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA--SP 259
           H N W   ++ A + G  + L  R +   ++   I    VT     P +   + N   + 
Sbjct: 216 HVNAWGLPYA-ATMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLGLLNYLEAN 274

Query: 260 EDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL 319
              +  L  VV     G+  P SL+  + ++G  + H +G+TE +   +V   KP    L
Sbjct: 275 GKDLSSLRRVV---VGGSALPRSLIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDL 331

Query: 320 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA 379
           P E +  L A+QG R +    L ++D   N  +P DGKT+GE+V+RG  V   Y K+P+ 
Sbjct: 332 PEEEKLELRAKQG-RPVPGVELRIVDDEGN-ELPWDGKTVGELVVRGPWVTGSYYKDPEK 389

Query: 380 NEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
            EE   +GWF +GD+AV   D YI+I DR KDVI SGGE ISSVE+E  L  HP V EAA
Sbjct: 390 TEELTRDGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAA 449

Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPK 498
           VV  P E+WGE P A V LKP A         E++ +    K+  +W+P  VVF   +PK
Sbjct: 450 VVGVPHEKWGERPLAVVVLKPGAKV-----TEEELLEHLAKKVAKWWLPDRVVFVDEIPK 504

Query: 499 SATGKIQKHLLR 510
           ++ GK  K  LR
Sbjct: 505 TSVGKFDKKALR 516

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  358 bits (920), Expect = e-118
 Identities = 148/521 (28%), Positives = 220/521 (42%), Gaps = 54/521 (10%)

Query: 3   QSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 62
           +   R  RL G      +       D V+ +  N     EA F  P  GAVL++ N RL+
Sbjct: 29  EVYQRARRLMGGLRALGV----GVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLS 84

Query: 63  ATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE 122
              +A+IL+HA   V++ D     L E     ++                         +
Sbjct: 85  PKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFV---------------VMDEK 129

Query: 123 YALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSL 182
                   E     E    E A      E  +  + YT+GTT  PKGVV SHR   L   
Sbjct: 130 AP------EGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVL--- 180

Query: 183 NGALIWGMNEGA-----VFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTA-KAVYTAI 236
           +      ++  A     V L  +PMFH N W   ++   +    +         ++    
Sbjct: 181 HSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELF 240

Query: 237 ATHGVTHFCAAPVVLNAIANASPEDTI---LPLTNVVNVNTAGAPPPPSLLFAMSQKGFR 293
              GVT     P V  A+A+    ++    L       +   G+  P SL+    + G  
Sbjct: 241 DGEGVTFTAGVPTVWLALADY--LESTGHRLKTL--RRLVVGGSAAPRSLIARFERMGVE 296

Query: 294 ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVP 353
           +   YGLTE +        K   +SL  E +  L A+ G+       L V D    +PVP
Sbjct: 297 VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPL-VRLRVADE-EGRPVP 354

Query: 354 ADGKTIGEIVMRGSCVMKGYLKNPKANE-EAFANGWFHSGDLAVKHPDNYIEIKDRLKDV 412
            DGK +GE+ ++G  +  GY  N +A       +G+F +GD+AV   + Y+EIKDRLKD+
Sbjct: 355 KDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDL 414

Query: 413 IISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLK-PEADELDKGKLA 471
           I SGGE ISSV++E  L  HP V EAAVVA P  +W E P A V  +  +          
Sbjct: 415 IKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTP------- 467

Query: 472 EDVSKFCRAKMPSY-WVPKSVVFAA-LPKSATGKIQKHLLR 510
           E++++       +   +P + VFA  +P+++ GK  K  LR
Sbjct: 468 EELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALR 508

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  357 bits (917), Expect = e-117
 Identities = 169/506 (33%), Positives = 229/506 (45%), Gaps = 46/506 (9%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
           P D V+++ PN P    A   A  AGAV   +N RL    +A+IL+ A + V+I   EF 
Sbjct: 62  PGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFA 121

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
           +L E          E       ++++GD          A  R  I  E     G    A 
Sbjct: 122 ALLEAVA-------EALPVVLVVLLVGD----------ADDRLPITLEALAAEGPGPDAD 164

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWTLPMF 203
             P D      L YTSGTT  PKGVV++HR   A    +  AL  G+    V L  LP+F
Sbjct: 165 ARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLF 224

Query: 204 HGNGWSYTWSLAALCGTSICL---RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE 260
           H  G         L G ++ L        + V   I  + VT     P  L  + +   +
Sbjct: 225 HIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEK 284

Query: 261 DTILPLTNVVNVNTAGAPPPPSLLFAMSQKG--FRITHTYGLTELTGPASVCAWKPEWDS 318
           D     +++  V + GAP PP LL    ++     I   YGLTE +   ++         
Sbjct: 285 DDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLA- 343

Query: 319 LPFETQARLNARQGVRTICLDGLDV--IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
                      + G     L G++V  +D    + +P     +GEI +RG  VMKGY   
Sbjct: 344 -----------KPGSVGRPLPGVEVRIVDPDGGEVLP---GEVGEIWVRGPNVMKGYWNR 389

Query: 377 PKANEEAFAN-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLV 435
           P+A  EAF   GW  +GDL     D Y+ I  RLKD+IISGGENI   E+E VL  HP V
Sbjct: 390 PEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAV 449

Query: 436 LEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA- 494
            EAAVV  PDERWGE   A V LKP  D       AE++  F R ++  Y VP+ VVF  
Sbjct: 450 AEAAVVGVPDERWGERVVAVVVLKPGGDA---ELTAEELRAFLRKRLALYKVPRIVVFVD 506

Query: 495 ALPKSATGKIQKHLLRAKAKEMGPVK 520
            LP++A+GKI +  LR + +    + 
Sbjct: 507 ELPRTASGKIDRRALREEYRAEPRLD 532

Length = 534

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  313 bits (804), Expect = e-103
 Identities = 126/361 (34%), Positives = 173/361 (47%), Gaps = 35/361 (9%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 218
           YTSGTT  PKGV+++HR     ++N      ++ G V+L   P++H  G  +     A  
Sbjct: 8   YTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFLLPALAAG 67

Query: 219 GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAP 278
           GT + + +   +AV   I  H VTH    P +   +           L+++  +    AP
Sbjct: 68  GTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARY-DLSSLRLIIYGAAP 126

Query: 279 PPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLP-------FETQARLNAR 330
            P  L  AM +  G      YG+TE TGP +      +W              + R    
Sbjct: 127 MPAELKRAMIEWFGPVFVQGYGMTE-TGPTTTLLSPEDWLRKLGSVGRPVPGVEVR---- 181

Query: 331 QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH 390
                       ++D      +P     +GEIV+RG  VM GY   P+A  EA  +GW H
Sbjct: 182 ------------IVDEDGR-ELPP--GEVGEIVVRGPAVMAGYWNRPEATAEALRDGWLH 226

Query: 391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 450
           +GDL     D Y+ I DR KD+IISGGENI   EVE VL  HP V + AV+  PDE WGE
Sbjct: 227 TGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGE 286

Query: 451 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLL 509
           +  A V L+P A        AE++  FCR ++  Y VPKSV F   LP++A+GKI K  L
Sbjct: 287 AVVAVVVLRPGATL-----DAEELIAFCRERLAGYKVPKSVEFVDELPRNASGKILKREL 341

Query: 510 R 510
           R
Sbjct: 342 R 342

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  275 bits (707), Expect = 1e-88
 Identities = 128/359 (35%), Positives = 180/359 (50%), Gaps = 27/359 (7%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 218
           YTSGTT  PKG +++HR       + A   G+ EG   L  +P+FH  G       +   
Sbjct: 9   YTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLGVLASLTA 68

Query: 219 G-TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGA 277
           G T + + +    A    I    +T     P +  A+    P+     L+++    + GA
Sbjct: 69  GATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEH-PDFDKFDLSSLRTGISGGA 127

Query: 278 PPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT 335
           P PP L+  + ++     IT  YG+TE +G  +  +    ++  P  T  R         
Sbjct: 128 PVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRP-GTVGRP-------- 178

Query: 336 ICLDGLDV--IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEA-FANGWFHSG 392
             L G++V  +D      VP     +GEI +RG  VMKGY  +P+A  EA  A+GW H+G
Sbjct: 179 --LPGVEVKIVDPDGG-EVPPG--EVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTG 233

Query: 393 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 452
           DL     D Y+ I  R+KD+II GGENI   E+E+ L  HP V EAAVV  PDER GE  
Sbjct: 234 DLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVV 293

Query: 453 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLR 510
            AFV LKP A  L      E++  FCR ++  + VP+ V F   LP++A+GKIQK  LR
Sbjct: 294 AAFVVLKPGA-TLT----EEELIAFCRGRLARFKVPRYVRFVDELPRTASGKIQKFKLR 347

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  263 bits (674), Expect = 5e-83
 Identities = 114/422 (27%), Positives = 170/422 (40%), Gaps = 39/422 (9%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
           P D V+++ PN P    A      AGA    ++  L A  +A+IL  + + V+I D E  
Sbjct: 23  PGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPAERLAYILEDSEAKVLITDDELL 82

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
               E L         KL     ++I  +             G    +  L  G      
Sbjct: 83  PKLLEVLL--------KLLVLLALIIVGD----------DGEGLDLLDDELLAGASAEPP 124

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
            PP D      + YTSGTT  PKGV+++HR    ++   A  +G+  G   L  LP+   
Sbjct: 125 APPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLLPLHFD 184

Query: 206 NGWSYTWSLAALCGTSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI 263
                 +      GT + +    +    +   I  + VT     P +L  +  A PE+  
Sbjct: 185 GSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLLKA-PEEKK 243

Query: 264 LPLTNVVNVNTAGAPPPPSLLFAMSQ--KGFRITHTYGLTELTGPASVCAWKPEWDSLPF 321
             L+++  V + G P PP LL  + +   G  + + YG TE T  A+             
Sbjct: 244 YDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGS 303

Query: 322 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 381
             +                + V+D    +PVP     +GE+ +RG  V +GYL +P+   
Sbjct: 304 IGRPLPGVE----------VKVLDEEG-EPVPPG--EVGELCIRGPGVARGYLNDPELTA 350

Query: 382 EAF-ANGWF--HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEA 438
           E F  +GW    +GDL     D Y+EI  R  D +   GE I   E+E VL  HP V EA
Sbjct: 351 ERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEA 410

Query: 439 AV 440
           AV
Sbjct: 411 AV 412

Length = 412

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  261 bits (669), Expect = 2e-81
 Identities = 147/502 (29%), Positives = 211/502 (42%), Gaps = 98/502 (19%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V+++ PN P    A FG   AGAV+  +N       +   L+ + + V+IV   F 
Sbjct: 48  KGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISF- 106

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
              E+AL     +         L                                     
Sbjct: 107 ---EDALA----SGAPLPLPVEL------------------------------------- 122

Query: 146 KPPEDEWQSIA-LGYTSGTTASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWTLPM 202
             P+D    +A L YT GTT  PKG +++HR   A +  +   +         FL  LP+
Sbjct: 123 -SPDD----LAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTALPL 177

Query: 203 FHGNGWSYTWSLAALCG-----TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA 257
           FH     +  ++  L G     T++ +       V   I  +  T F   P + NA+ N 
Sbjct: 178 FH----IFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNALLNH 233

Query: 258 SPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEW 316
            PE      +++    + GAP P  +     +K G  +   YGLTE T P        + 
Sbjct: 234 -PEFKKYDFSSLRLCISGGAPLPVEVAERFEEKTGAPLVEGYGLTE-TSPV-TTVNPLDG 290

Query: 317 DS------LPF-ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV 369
           +       LP   T+ +                ++D   N  +P  G+ +GE+V+RG  V
Sbjct: 291 ERKPGSIGLPLPGTEVK----------------IVDDEGN-ELP-PGE-VGELVVRGPQV 331

Query: 370 MKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
           MKGY   P+   E   +GW  +GD+     D Y  I DR KD+II GG N+   E+E+VL
Sbjct: 332 MKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVL 391

Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
           Y HP VLEAAVV  PD   GE+  AFV LK  A         E++  FCR ++ +Y VP+
Sbjct: 392 YSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASL-----TEEELIAFCRERLAAYKVPR 446

Query: 490 SVVF-AALPKSATGKIQKHLLR 510
            V F   LPKSA GKI +  LR
Sbjct: 447 QVEFRDELPKSAVGKILRRELR 468

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  252 bits (646), Expect = 1e-77
 Identities = 160/499 (32%), Positives = 232/499 (46%), Gaps = 51/499 (10%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V++ APN P    A  GA  AGAV+  +N R  A   A+IL+   +  + V   F 
Sbjct: 54  KGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFL 113

Query: 86  SLAEEALKMMEANSEGKLKTPHL--IVIGDESCDSKQLEYALARGAIEYEKFLETGDPEF 143
            +   A            + P L  +VI    C++++ +         +  FL  GDP  
Sbjct: 114 GVDYSA----------TTRLPALEHVVI----CETEEDD-PHTEKMKTFTDFLAAGDPAE 158

Query: 144 AWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMF 203
                + +  +  L +TSGTT  PKG +++HR     + + A   G+ EG  +L   P F
Sbjct: 159 RAPEVDPDDVADIL-FTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFF 217

Query: 204 HGNGWSYTWSLAALC--GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAI---ANAS 258
           H  G+      A L    T + L       V+  I T  +T     P + N++    + S
Sbjct: 218 HVFGYKAGV-NAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRS 276

Query: 259 PEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHT-YGLTELTGPASVCAWKPEW 316
            ED    L+++    T  A  P +LL     + G  I  T YGL+E +G  +        
Sbjct: 277 AED----LSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFN------ 326

Query: 317 DSLPFETQARLNARQGVRTICLDGLDV-IDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 375
                +   +  A      I   G++  I     + VP     +GE+++RG  VMKGY  
Sbjct: 327 ---RLDDDRKTVAGTIGTAI--AGVENKIVNELGEEVPVG--EVGELLVRGPNVMKGYYD 379

Query: 376 NPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPL 434
           +P+A   A  A+GW H+GDL     + Y+ I DR KD+ I GG N+   EVE+VLY HP 
Sbjct: 380 DPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPA 439

Query: 435 VLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF- 493
           V EAAV+  PDER GE   A+V LKP A EL      E++  +CR  +  Y VP+S+ F 
Sbjct: 440 VAEAAVIGVPDERLGEVGKAYVVLKPGA-ELT----EEELIAYCREHLAKYKVPRSIEFL 494

Query: 494 AALPKSATGKIQKHLLRAK 512
             LPK+ATGK+ K  LR K
Sbjct: 495 DELPKNATGKVLKRALREK 513

Length = 513

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  247 bits (633), Expect = 2e-76
 Identities = 116/359 (32%), Positives = 158/359 (44%), Gaps = 23/359 (6%)

Query: 157 LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 216
           L YTSGTT  PKGV+ +H        +     G+    V L   P+ H  G+ Y   L  
Sbjct: 98  LLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPSPLAHITGFLYGLELPL 157

Query: 217 LCGTSICLRQV-TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTA 275
           L G ++ L+           I  HGVT    A   L  +  A  +     L ++      
Sbjct: 158 LLGATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAA-ADAAGPDLPSLRVFLCG 216

Query: 276 GAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVR 334
           GAP P  L    ++  G ++   YG+TE     +V       D     T  R      VR
Sbjct: 217 GAPVPRELARRAAEALGAKVVRAYGMTE-VPLVTVGTPDDP-DDKRAATDGRPVPGVEVR 274

Query: 335 TICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDL 394
                   ++D   N  VP      GE+ +RG  +  GYL  P   E    +GWF +GDL
Sbjct: 275 --------IVDDDGN-DVPPG--EEGELQVRGPQLFLGYLDPPDNTEAFTDDGWFRTGDL 323

Query: 395 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 454
                D Y+ I  R KD+II GGENIS+ E+E +L  HP V E AVVA PDER GE  CA
Sbjct: 324 GRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCA 383

Query: 455 FVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKS-VVFAALPKSATGKIQKHLLRA 511
            V   P A  L       ++++   A+ +     P+   V  ALP++ +GK+QK  LR 
Sbjct: 384 VVVPAPGA-SLT----LAELTEHLAAQGLAKQKWPERLEVVDALPRTPSGKVQKFELRE 437

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  242 bits (619), Expect = 9e-76
 Identities = 128/354 (36%), Positives = 172/354 (48%), Gaps = 25/354 (7%)

Query: 157 LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 216
           + YTSGTT  PKGVV+SHR     +   A   G+ EG V L  LP+FH  G       A 
Sbjct: 5   ILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLLGAL 64

Query: 217 LCGTSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 274
           L G ++ L        +    I  + VT     P + +A+A A  ED    L+++  + +
Sbjct: 65  LAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKA-AEDRGYDLSSLRLLIS 123

Query: 275 AGAPPPPSLL-FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGV 333
            G P  P LL     + G  I   YGLTE +    V +  P+ +     T  R     GV
Sbjct: 124 GGEPLSPELLERFEERPGAPILEGYGLTETSV---VTSTNPDSELKKPGTVGR--PVPGV 178

Query: 334 RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN-PKANEEAFANGWFHSG 392
                  + V+D       P     +GE+V+RG  VMKGY  N P+    A  +GW+ +G
Sbjct: 179 E------VRVVDEEGK---PLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTG 229

Query: 393 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 452
           DL     + Y+ I  R KD+I  GGEN+   EVE VL  HP V EAAVV  PDE  GE  
Sbjct: 230 DLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERI 289

Query: 453 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 505
            AFV L+P AD      LAE++    R ++  Y VP+ + F   LPK+A+GKI 
Sbjct: 290 VAFVVLRPGADA-----LAEELKAHLRERLAPYKVPRVIEFVDELPKTASGKID 338

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score =  247 bits (632), Expect = 2e-75
 Identities = 160/505 (31%), Positives = 244/505 (48%), Gaps = 49/505 (9%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
           P D V  +A N     EA +G   +GAV ++IN RL    +A+I++HA    V+ D  F 
Sbjct: 63  PGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFL 122

Query: 86  SLAEEALKMMEANSEGKLKT-PHLIVIGDES---CDSKQLEYALARGAIEYEKFLETGDP 141
            L +            +       + + D +     S  L        + YE  +   D 
Sbjct: 123 PLVDAL--------APQCPNVKGWVAMTDAAHLPAGSTPL--------LCYETLVGAQDG 166

Query: 142 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWT 199
           ++ W P  DE Q+ +L YTSGTT +PKG + SHR   L +   AL   M   A    L  
Sbjct: 167 DYDW-PRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPV 225

Query: 200 LPMFHGNGWSYTWSLAALCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVV----LNA 253
           +PMFH N W   +S A L G  + L    +  K++Y  I    VT     P V    LN 
Sbjct: 226 VPMFHVNAWGLPYS-APLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNH 284

Query: 254 IANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAW 312
           +  A      L  + +      G+  PP+++     + G  + H +G+TE++   ++C  
Sbjct: 285 MREAG-----LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKL 339

Query: 313 KPEWDSLPFETQARLNARQGVRTICLDGLDV-IDARTNQPVPADGKTIGEIVMRGSCVMK 371
           K +   LP + Q +L  +QG R I   G+D+ I     + +P DGK  G++ +RG  V+ 
Sbjct: 340 KWKHSQLPLDEQRKLLEKQG-RVIY--GVDMKIVGDDGRELPWDGKAFGDLQVRGPWVID 396

Query: 372 GYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 431
            Y +    +     +GWF +GD+A    D +++I DR KDVI SGGE ISS+++E V   
Sbjct: 397 RYFRG---DASPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVA 453

Query: 432 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV 491
           HP V EAA +A    +W E P   V  +P A E+ +    E++  F   K+  +W+P  V
Sbjct: 454 HPAVAEAACIACAHPKWDERPLLVVVKRPGA-EVTR----EELLAFYEGKVAKWWIPDDV 508

Query: 492 VF-AALPKSATGKIQKHLLRAKAKE 515
           VF  A+P +ATGK+QK  LR + ++
Sbjct: 509 VFVDAIPHTATGKLQKLKLREQFRD 533

Length = 539

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score =  245 bits (627), Expect = 1e-74
 Identities = 156/497 (31%), Positives = 241/497 (48%), Gaps = 32/497 (6%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V+ IA N     EA +G    GA+ +++N RL    +A+I++HA   VVI D  F 
Sbjct: 63  LGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFV 122

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
            + E+           KL +    V+     D+  +     + A+ YE+++   D +FAW
Sbjct: 123 PILEKIA--------DKLPSVERYVV---LTDAAHMPQTTLKNAVAYEEWIAEADGDFAW 171

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSL--NGALIWGMNEGAVFLWTLPMF 203
           K   DE  +  + YTSGTT  PKGV+ SHR   L +L  N     G +     L  +P+F
Sbjct: 172 KT-FDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLF 230

Query: 204 HGNGWSYTWSLAALCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVV-LNAIANASPE 260
           H N W   +S  ++ GT + +   ++   +VY  + T  VT     P V L  +     E
Sbjct: 231 HANSWGIAFSAPSM-GTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKE 289

Query: 261 DTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLP 320
              LP   +V     G+  P S++ A    G  + H +G+TE++   ++ A KP +  LP
Sbjct: 290 GLKLPHLKMVVC--GGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLP 347

Query: 321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
            + +  +  +QG        + + D    + +P DGKT G + +RG  V   Y +    +
Sbjct: 348 GDARLDVLQKQG-YPPFGVEMKITDDAGKE-LPWDGKTFGRLKVRGPAVAAAYYR---VD 402

Query: 381 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
            E    +G+F +GD+A      Y+ I DR KDVI SGGE ISS+++E +   HP V EAA
Sbjct: 403 GEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAA 462

Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPK 498
           V+     +W E P   V LKP      +    E++ K+   K+  +W+P  V F  A+P 
Sbjct: 463 VIGVYHPKWDERPLLIVQLKP-----GETATREEILKYMDGKIAKWWMPDDVAFVDAIPH 517

Query: 499 SATGKIQKHLLRAKAKE 515
           +ATGKI K  LR + K+
Sbjct: 518 TATGKILKTALREQFKD 534

Length = 542

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  243 bits (623), Expect = 4e-74
 Identities = 140/504 (27%), Positives = 220/504 (43%), Gaps = 56/504 (11%)

Query: 25  SPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEF 84
              D V+ +  N  A          AGAV   +N  L    +A+IL H+ +   +VD   
Sbjct: 59  KKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPAL 118

Query: 85  FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFA 144
              AE AL ++  ++        L++ G E+            G +++  + E G     
Sbjct: 119 APTAEAALALLPVDTLILS----LVLGGREAPG----------GWLDFADWAEAGSVAEP 164

Query: 145 WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIW---------GMNEGAV 195
                D+     + YTSGT + PKG +++HR         ALI           M+   +
Sbjct: 165 DVELADD-DLAQILYTSGTESLPKGAMLTHR---------ALIAEYVSCIVAGDMSADDI 214

Query: 196 FLWTLPMFHGNGWS-YTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAI 254
            L  LP++H      +      +  T++ L     + +   I    +T F A P V  ++
Sbjct: 215 PLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISL 274

Query: 255 ANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAW 312
               P+     L+++       +  P  +L  + ++  G R  + YG TE+   A+V   
Sbjct: 275 LR-HPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATV--- 330

Query: 313 KPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKG 372
                 L  E   R     G   + ++   V+D      V      +GEIV R   +M G
Sbjct: 331 ------LGPEEHLRRPGSAGRPVLNVE-TRVVDDD-GNDVAPG--EVGEIVHRSPQLMLG 380

Query: 373 YLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 432
           Y  +P+   EAF  GWFHSGDL V   + YI + DR KD+I +GGEN++S EVE+ LY H
Sbjct: 381 YWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTH 440

Query: 433 PLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV 492
           P V E AV+  PD +W E+  A V  K  A  +      +++   CRA++  + VPK V+
Sbjct: 441 PAVAEVAVIGLPDPKWIEAVTAVVVPKAGAT-VT----EDELIAHCRARLAGFKVPKRVI 495

Query: 493 FA-ALPKSATGKIQKHLLRAKAKE 515
           F   LP++ +GKI K  LR +   
Sbjct: 496 FVDELPRNPSGKILKRELRERYAG 519

Length = 523

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  240 bits (615), Expect = 4e-74
 Identities = 124/363 (34%), Positives = 177/363 (48%), Gaps = 34/363 (9%)

Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 215
           A+ YTSGTT  PKGV+++H      +   A + G+    V L  LP+FH N  +Y+   A
Sbjct: 85  AILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAYSVYAA 144

Query: 216 ALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA--SPEDTILPLTNVVNV 272
            L G ++ L  + +A   +  +  HG T F     +   +     SP+D   PL  V   
Sbjct: 145 LLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRDHPLRFVF-- 202

Query: 273 NTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQ 331
              GAP P ++  A  ++ G ++   YG+TE      V    P  D  P  +  R   R 
Sbjct: 203 ---GAPLPAAIWPAFEERFGVKLVEGYGMTE----TGVPIIAPG-DPAPPGSCGR--PRP 252

Query: 332 GVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS---CVMKGYLKNPKANEEAFANGW 388
           GV       + ++D      VP     +GE+V+R      + KGY   P+A  +A+ NGW
Sbjct: 253 GVE------VRIVDEDGR-EVPPG--EVGELVVRPRRPWAMFKGYYGMPEATAKAWRNGW 303

Query: 389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 448
           FH+GD   +  D ++   DR KD I   GENISS EVE  +  HP V EAAVVA P E  
Sbjct: 304 FHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELG 363

Query: 449 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALPKSATGKIQKH 507
            +   A V L+P  + LD     E + +FCR ++P + VP+ +     LPK+ T KIQK 
Sbjct: 364 EDEVKAVVVLRP-GETLD----PEALLEFCRDRLPYFMVPRYIEFVDELPKTPTEKIQKA 418

Query: 508 LLR 510
            LR
Sbjct: 419 ELR 421

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  215 bits (549), Expect = 3e-65
 Identities = 118/363 (32%), Positives = 174/363 (47%), Gaps = 36/363 (9%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAAL- 217
           +TSGTT  PKGV ++H+     + N A    +      L  +P+FH +G   +  LA L 
Sbjct: 9   HTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIVS-LLATLL 67

Query: 218 -CGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAG 276
             G+ +C  + +A   +  IA + VT + A P +   +   +  +   P   +  + +A 
Sbjct: 68  AGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPPPRLRFIRSAS 127

Query: 277 APPPPSLLFAMSQKGFR--ITHTYGLTELTGPASVCAWKPEWDS-----LPFETQARLNA 329
           AP PP++L  + +K F   +   YG+TE     +     P          P   +  +  
Sbjct: 128 APLPPAVLDRL-EKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPAGVEVAILD 186

Query: 330 RQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF 389
             G                 +P+P      GEIV+RG  V  GYL NP+AN EAF +GWF
Sbjct: 187 DDG-----------------RPLPPG--QEGEIVIRGPNVTAGYLNNPEANREAFRDGWF 227

Query: 390 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 449
            +GDL     D Y+ +  R+K++I  GGE IS  EVE+VL  HP V EA V   PDE +G
Sbjct: 228 RTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYG 287

Query: 450 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHL 508
           E   A V L+      D     E++  F R ++ ++ VPK ++F  ALPK ATGKIQ+  
Sbjct: 288 EEVAAAVVLRA-----DSKVTIEELRDFARKRLAAFKVPKKILFVDALPKGATGKIQRRK 342

Query: 509 LRA 511
           L  
Sbjct: 343 LAE 345

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  215 bits (551), Expect = 6e-65
 Identities = 123/366 (33%), Positives = 171/366 (46%), Gaps = 38/366 (10%)

Query: 151 EWQSIALG-YTSGTTASPKGVVVSHRGAYLMSLNGALIW-GMNEGAVFLWTLPMFHGNGW 208
           +    A   +TSG+T  PK VV +  G +L S  G+    G+     +L +LP+FH +G 
Sbjct: 75  DLDRPATIIFTSGSTGKPKAVVHT-WGNHLASARGSAENLGLTPDDNWLLSLPLFHVSGL 133

Query: 209 SYTWSLAALCGTSICLRQ-VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 267
           +     + L G ++ L     A+A+  A+  HGVTH    P  L  +  +        L+
Sbjct: 134 AIVMR-SLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLESLGAR---WLS 189

Query: 268 NVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPAS-VCAWKPEWDSLPFETQAR 326
           ++  V   GAP PPSLL    Q+G  +  TYG+TE    AS V   KP+           
Sbjct: 190 SLRAVLLGGAPIPPSLLEQARQRGIPLYPTYGMTET---ASQVATLKPD---------DF 237

Query: 327 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN 386
           L     V    L G ++   R   P        GEI++RG  +  GYL           +
Sbjct: 238 LAKLGSVGKP-LPGREL---RIVNP------QDGEILVRGPSLFLGYLPQGGLTPPLDED 287

Query: 387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 446
           GWFH+GDL     + Y+ +  R  D+IISGGENI   E+E VL  HP V EAAVV  PD+
Sbjct: 288 GWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDD 347

Query: 447 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQ 505
            WG+ P AFV   P  D +   +L      F   K+  Y  PK       LP++A+GKI 
Sbjct: 348 EWGQRPVAFV--VPNDDPVSVEELQA----FLADKLAKYKRPKRWYPLPELPRNASGKID 401

Query: 506 KHLLRA 511
           +  LR 
Sbjct: 402 RAALRQ 407

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  214 bits (548), Expect = 1e-63
 Identities = 140/514 (27%), Positives = 212/514 (41%), Gaps = 108/514 (21%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           D V+++  N   M          GAV   +N RL+   + + L  A    +I D +F   
Sbjct: 53  DRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDF--- 109

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
                                ++ G                 +++ + +     E   + 
Sbjct: 110 ------------------EAKLIPGIS---------------VKFAELMNGPKEEAEIQE 136

Query: 148 --PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
               DE  +I   YTSGTT  PKGV+ ++   +  ++  AL  G+ E   +L  +P+FH 
Sbjct: 137 EFDLDEVATIM--YTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFH- 193

Query: 206 NGWSYTWSLAALCGTSICLRQVT------------AKAVYTAIATHGVTHFCAAPVVLNA 253
                      + G SI +R V             A+ +   + T GVT       +L  
Sbjct: 194 -----------ISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQR 242

Query: 254 IANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPAS-VCAW 312
           +     E T     +   +   G P P  LL    +KG  +  +YG+TE    AS +   
Sbjct: 243 LLERLGEGTYPS--SFRCMLLGGGPAPKPLLEQCKEKGIPVYQSYGMTE---TASQIVTL 297

Query: 313 KPEWDSL--------P-FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIV 363
            PE D+L        P F  + ++                   +    VP      GEIV
Sbjct: 298 SPE-DALTKLGSAGKPLFPCELKI------------------EKDGVVVPP--FEEGEIV 336

Query: 364 MRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSV 423
           ++G  V KGYL    A  E F +GWF +GD+     + ++ + DR  D+IISGGENI   
Sbjct: 337 VKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPA 396

Query: 424 EVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP 483
           E+E+VL  HP V EA VV  PD++WG+ P AFV    E  E       E++  FC  K+ 
Sbjct: 397 EIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEVTE-------EELRHFCEEKLA 449

Query: 484 SYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKEM 516
            Y VPK   F   LP++A+GK+ +H L+   +EM
Sbjct: 450 KYKVPKRFYFVEELPRNASGKLLRHELKQLVEEM 483

Length = 483

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score =  211 bits (540), Expect = 6e-62
 Identities = 163/515 (31%), Positives = 229/515 (44%), Gaps = 74/515 (14%)

Query: 26  PSDLVSVIAPN---VPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 82
             D+VS   PN      +Y A       GAVLN +        ++F+L HA S V++V +
Sbjct: 79  RGDVVSCQLPNWWEFTVLYLA---CSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPK 135

Query: 83  EFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE 142
            F      A  M            H++V+G +             GA  +E  L T  P 
Sbjct: 136 TFRGFDHAA--MARRLRPELPALRHVVVVGGD-------------GADSFEALLIT--PA 178

Query: 143 FAWKP------------PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGM 190
           +  +P            P+D  Q I   YTSGTT  PKGV+ +        +  A   G+
Sbjct: 179 WEQEPDAPAILARLRPGPDDVTQLI---YTSGTTGEPKGVMHTANTLMANIVPYAERLGL 235

Query: 191 NEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQV--TAKAVYTAIATHGVTHFCAAP 248
               V L   PM H  G+ Y   +  + G +  L+ +   A+A    I T GVT   A+ 
Sbjct: 236 GADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAA-ELIRTEGVTFTMAST 294

Query: 249 VVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTE----- 302
             L  +  A  +++  P++++     AGAP P +L+       G +I   +G+TE     
Sbjct: 295 PFLTDLTRA-VKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVT 353

Query: 303 LTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEI 362
           LT            D     T        GV       + V+DA    P+PA    IG +
Sbjct: 354 LTKLDDP-------DERASTTDGC--PLPGVE------VRVVDA-DGAPLPAG--QIGRL 395

Query: 363 VMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISS 422
            +RG     GYLK P+ N    A+GWF +GDLA    D YI I  R KDVII GGENI  
Sbjct: 396 QVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPV 454

Query: 423 VEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK- 481
           VE+E +LY HP + + A+VA PDER GE  CAFV  +P    LD     E++ +F +A+ 
Sbjct: 455 VEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQ-SLDF----EEMVEFLKAQK 509

Query: 482 -MPSYWVPKSVVFAALPKSATGKIQKHLLRAKAKE 515
               Y   + VV  ALP++ +GKIQK  LR   + 
Sbjct: 510 VAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRG 544

Length = 547

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  210 bits (537), Expect = 2e-61
 Identities = 145/495 (29%), Positives = 210/495 (42%), Gaps = 51/495 (10%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           D V ++  N     E+   A M GA+   +N RL    +AF++S   + VV+ +     +
Sbjct: 68  DRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPV 127

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFL-ETGDPEFAWK 146
           A         +    L T  ++V G  S D            + YE  L E G       
Sbjct: 128 ATAV-----RDIVPLLST--VVVAGGSSDD----------SVLGYEDLLAEAGPAHAPVD 170

Query: 147 PPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMN-EGAVFLWTLPMFHG 205
            P D    I   YTSGTT  PKG V++H      ++      G +    V    +P+FH 
Sbjct: 171 IPNDSPALIM--YTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHI 228

Query: 206 NGWSYTWSLAALCGTSIC--LRQVTAKAVYTAIATHGVTHFCAAPVVLNAI---ANASPE 260
            G         L   ++   L       +   +    VT     P    A+     A P 
Sbjct: 229 AGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPR 288

Query: 261 DTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDS 318
           D  L       ++   AP   +LL  M+      +I   +G TE++         P    
Sbjct: 289 DLALR-----VLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMS---------PVTCM 334

Query: 319 LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPK 378
           L  E   R     G + I      V+D   N         +GEIV R   +M GY  NP+
Sbjct: 335 LLGEDAIRKLGSVG-KVIPTVAARVVDENMNDVPVG---EVGEIVYRAPTLMSGYWNNPE 390

Query: 379 ANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEA 438
           A  EAFA GWFHSGDL  +  + Y+ + DR KD+IISGGENI   EVE VL  HP ++E 
Sbjct: 391 ATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEV 450

Query: 439 AVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALP 497
           AV+ R DE+WGE P A   ++ +   L      ED+++F   ++  Y  PK++ +  ALP
Sbjct: 451 AVIGRADEKWGEVPVAVAAVRNDDAALT----LEDLAEFLTDRLARYKHPKALEIVDALP 506

Query: 498 KSATGKIQKHLLRAK 512
           ++  GK+ K  LR +
Sbjct: 507 RNPAGKVLKTELRER 521

Length = 542

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  209 bits (533), Expect = 2e-61
 Identities = 135/474 (28%), Positives = 201/474 (42%), Gaps = 50/474 (10%)

Query: 45  FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 104
           F       +   +NIRL    + F L  + + V+ V++ F ++A           +    
Sbjct: 71  FAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSM--------QKVSY 122

Query: 105 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTT 164
              +I I                         E  D +      ++E  S  + YTSGTT
Sbjct: 123 VQRVISITSLK---------------------EIEDRKIDNFVEKNESASFIICYTSGTT 161

Query: 165 ASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSIC 223
             PKG V++    +  +LN      +      +  LP+FH  G   + +      G  I 
Sbjct: 162 GKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIV 221

Query: 224 LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSL 283
            R+       + I  H VT     P +  A+ N S  +T   L +V      GAP P  L
Sbjct: 222 PRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETT-NLQSVRWFYNGGAPCPEEL 280

Query: 284 LFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDV 343
           +     +GF     +G+TE T P            +  E  AR       + +     ++
Sbjct: 281 MREFIDRGFLFGQGFGMTE-TSPTVF---------MLSEEDARRKVGSIGKPVLFCDYEL 330

Query: 344 IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYI 403
           ID   N+ V      +GE+++RG  VMK Y   P A EE   +GW  +GDLA    D ++
Sbjct: 331 IDENKNK-VEVGE--VGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFV 387

Query: 404 EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEAD 463
            I  R K++IISGGENI  +EVE+V+     V E AVV R   +WGE P AF+  K  + 
Sbjct: 388 YIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSV 447

Query: 464 ELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLRAKAKEM 516
            ++     +DV + CR  +  Y +PK +VF   LPK+ATGKIQK  L  + K  
Sbjct: 448 LIE-----KDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKSR 496

Length = 496

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  204 bits (521), Expect = 3e-60
 Identities = 123/371 (33%), Positives = 175/371 (47%), Gaps = 45/371 (12%)

Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 215
            + YTSGTT  PKG + +HR     +   A   G+   +V L  LP+FH  G   + +  
Sbjct: 88  VIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQGSMNAP 147

Query: 216 ALCG-TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 274
              G T + L +   +A   AI  + VTH+     ++  +    P      L+++  V  
Sbjct: 148 IYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLA-HPRFADYDLSSLKVVGG 206

Query: 275 AGAPPPPSL---LFAMSQKGFRITHTYGLTE------LTGPASVCAWKPEWDSLP-FETQ 324
            GA  PP++   L A++  G      YGLTE         P      KP+   +P F T 
Sbjct: 207 GGAALPPAVAERLKALT--GLLYEEGYGLTETHTCTHFNPPDRP---KPQCLGIPVFGTD 261

Query: 325 ARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 384
           AR                VID  T + +P  G   GEIV+RG  V KGY   P+A  E+F
Sbjct: 262 AR----------------VIDPETGEELP-PG-EEGEIVVRGPQVFKGYWNRPEATAESF 303

Query: 385 ----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 440
                  +F +GDL     + Y    DR+K +I   G  +   EVE +LY HP VLE  V
Sbjct: 304 IELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCV 363

Query: 441 VARPDERWGESPCAFVTLKPEADELDKGKL-AEDVSKFCRAKMPSYWVPKSVVF-AALPK 498
           + RPD R GE   AFV LKP+     +GK+  ED+ ++CR +M +Y  P+ + F   LPK
Sbjct: 364 IGRPDPRRGEVVKAFVVLKPDY----RGKVTEEDIIEWCRERMAAYKYPRIIEFVDELPK 419

Query: 499 SATGKIQKHLL 509
           +A+GK+   LL
Sbjct: 420 TASGKVLWRLL 430

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  201 bits (514), Expect = 2e-58
 Identities = 132/493 (26%), Positives = 214/493 (43%), Gaps = 53/493 (10%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D+V +++PN             AGAV+ + N       +A  +   S A +       
Sbjct: 56  KGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVK-DSGAKLA-----I 109

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
           + +E A K+     E       ++++      S          AI+   F +  +P    
Sbjct: 110 TTSELAEKLASLALEP------VVLLDSADDGSA---------AIDDLLFADEPEPPVVV 154

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMF 203
              +D     AL Y+SGTT   KGV+++HR             G N     V L  LPMF
Sbjct: 155 IKQDD---VAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMF 211

Query: 204 HGNGWS-YTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT 262
           H  G +    +L  L  T + + +   +    AI  + VTH    P ++ A+      D 
Sbjct: 212 HIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVDK 271

Query: 263 ILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP 320
              L+++  + +  AP    L  A   +  G  +   YG+TE +   ++C          
Sbjct: 272 -YDLSSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMC--------PV 322

Query: 321 FETQARLNARQGVRTICLDGLDV--IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPK 378
            E   +  +   V  + +  ++   +D  T + +P   +  GE+ +RG  VMKGYL NP+
Sbjct: 323 PEKDPKPGS---VGRL-VPNVEAKIVDPETGESLPP-NQP-GELWVRGPQVMKGYLNNPE 376

Query: 379 ANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 437
           A  E    +GW H+GDL     D Y+ I DRLK++I   G  ++  E+E +L  HP + +
Sbjct: 377 ATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIAD 436

Query: 438 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AAL 496
           AAV+  PDE  GE P AFV  +P ++        ++V +F   ++  Y   + VVF  A+
Sbjct: 437 AAVIPYPDEEAGEIPMAFVVRQPGSEL-----SEDEVMQFVAKQVAPYKKVRKVVFVDAI 491

Query: 497 PKSATGKIQKHLL 509
           PKS +GKI +  L
Sbjct: 492 PKSPSGKILRREL 504

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  201 bits (513), Expect = 4e-58
 Identities = 135/510 (26%), Positives = 206/510 (40%), Gaps = 71/510 (13%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V++  PN P    A       GA+   ++  L+A  VA  ++     V+I D   F
Sbjct: 64  KGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTF 123

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
                  K +    +       ++V+               R  + Y++ +E    +F +
Sbjct: 124 ----RNGKEIALLEDADAVLSSVVVVP--------------RLGLWYDEAVEKASEKFEF 165

Query: 146 KP--PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLN--GALIWGMNEGAVFLWTLP 201
           +P   +D    + L YTSGTT  PKG+V SH G YL+           +  G  F  +  
Sbjct: 166 EPLPADDP---LFLLYTSGTTGKPKGIVHSHGG-YLVEHRLTAKFHGDLLPGDRFWNSSD 221

Query: 202 MFH--GNGWSYTWSLAALCGTSICL----RQVTAKAVYTAIATHGVTHFCAAPVVLNAIA 255
                G  +S    LA   G +  L       + + ++ A+  + VT F  +P  L  + 
Sbjct: 222 PGWIYGLWYSVFSPLA--SGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLM 279

Query: 256 NA-SPEDTILP-LTNVVNVNTAGAP-PPPSLLFAMSQKGFRITHTYGLTELTGP--ASVC 310
                E   L  L  +    +AG P  P +  +  S  G  I   YG TE      A   
Sbjct: 280 KLGLGEPYDLSSLRVLG---SAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP 336

Query: 311 AWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS--C 368
             K     LP           G        +  +D   N PVP      GE+V+R     
Sbjct: 337 PVKNGSSGLPLP---------GYA------VRRVDDEGN-PVPPGV---GELVVRLPWPG 377

Query: 369 VMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKV 428
           +   Y  +P+  +EA+   W+ +GD A +  D Y  +  R  DVI   G+ I  +E+E V
Sbjct: 378 MALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESV 437

Query: 429 LYLHPLVLEAAVVARPDERWGESPCAFVTLKP--EADELDKGKLAEDVSKFCRAKMPSYW 486
           L  HP V EAAVV  PD   G+   AFV L    E +E     LAE++ +     +  + 
Sbjct: 438 LLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNE-----LAEEIRRHVARNIGPHA 492

Query: 487 VPKSVVFA-ALPKSATGKIQKHLLRAKAKE 515
           +P+ + F   LPK+A+GKIQ+ LLR    +
Sbjct: 493 IPRKIRFVDELPKTASGKIQRRLLRKILHK 522

Length = 528

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  197 bits (503), Expect = 5e-57
 Identities = 129/497 (25%), Positives = 201/497 (40%), Gaps = 60/497 (12%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D+V++I+PN         G   AG ++++ N       +A  L  +   ++  D +  
Sbjct: 34  QGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTPDELAHQLKISKPKLIFCDPDEL 93

Query: 86  SLAEEALKMMEANSEGKLKT-PHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFA 144
              +EA K        +L     +IV+                G +  E  LE       
Sbjct: 94  DKVKEAAK--------ELGPVVRIIVLDSAP-----------DGVLRIEDLLEPRLGAED 134

Query: 145 WKPPEDEWQS----IALGYTSGTTASPKGVVVSHRG---AYLMSLNGALIWGMNEGAVFL 197
              P           AL Y+SGTT  PKGV++SH+          +       +   V L
Sbjct: 135 EFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNPDSSNDVVL 194

Query: 198 WTLPMFHGNG-WSYTWSLAALCG-TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIA 255
             LP +H  G  +   SL  LCG T I + +  ++     I  + VT     P +  A+A
Sbjct: 195 TFLPFYHAYGLTTTLASL--LCGATVIIMPKFDSETFLKLIEKYKVTSLFLVPPIAVALA 252

Query: 256 NASPEDTILPLTNVVNVNTAGAPPPPSL---LFAMSQKGFRITHTYGLTELTGPASVCAW 312
             SP      L+++  + +  AP    L   L         I   YG+TE     ++   
Sbjct: 253 K-SPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTT-IKQGYGMTETGPATTLT-- 308

Query: 313 KPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKG 372
                     +  RL      +        ++D    + +  + +  GE+ ++G  +MKG
Sbjct: 309 --PPGDEKPGSVGRLVPNVEAK--------IVDEDGGKSLGPNER--GELCVKGPQIMKG 356

Query: 373 YLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 431
           YL NP+A +E    +GW H+GD+     D    I DR K++I   G  +   E+E VL  
Sbjct: 357 YLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAELEAVLLE 416

Query: 432 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL-AEDVSKFCRAKMPSY-WVPK 489
           HP V +AAV+  PDE  GE P A+V LKP        KL  ++V  +   K+  Y  +  
Sbjct: 417 HPKVADAAVIGIPDEVAGELPRAYVVLKP------GSKLTEQEVKDYVAKKVAKYKQLRG 470

Query: 490 SVVFA-ALPKSATGKIQ 505
            VVF   +PKS +GKI 
Sbjct: 471 GVVFVDEIPKSPSGKIL 487

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  198 bits (506), Expect = 6e-57
 Identities = 150/531 (28%), Positives = 234/531 (44%), Gaps = 89/531 (16%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V +   N P    A +    A AV+  +N       +A  ++ + + V IV  E  
Sbjct: 60  KGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELA 119

Query: 86  SLAEEALKMMEANSEGKLKTPHLIV------IGDESCDS--------KQLEYALARGAIE 131
                  K+  A    +L+  H+IV      +  E   +          L+     G + 
Sbjct: 120 P------KVAPAVGNLRLR--HVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVA 171

Query: 132 YEKFLETGDPEFAWKPPEDEWQS--IA-LGYTSGTTASPKGVVVSHRGAYLMSLNGALIW 188
           +++ L  G       PP        +A L YTSGTT  PKG + +HR   + +  G+++W
Sbjct: 172 WKEALAAGLA-----PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTV-MANAVGSVLW 225

Query: 189 -GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-----RQVTAKAVYTAIATHGVT 242
                 +V L  LP+FH  G  ++ +     G ++ L     R+  A+     I  + VT
Sbjct: 226 SNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARL----IERYRVT 281

Query: 243 HFCAAP-VVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-----GFRITH 296
           H+   P +V++ +A+    +    L+++  +   GA  P     A++++     G     
Sbjct: 282 HWTNIPTMVVDFLASPGLAE--RDLSSLRYIGGGGAAMPE----AVAERLKELTGLDYVE 335

Query: 297 TYGLTE-----LTGPASVCAWKPEWDSLP-FETQARLNARQGVRTICLDGLDVIDARTNQ 350
            YGLTE      + P      K +   +P F   AR                VID  T +
Sbjct: 336 GYGLTETMAQTHSNPPD--RPKLQCLGIPTFGVDAR----------------VIDPETLE 377

Query: 351 PVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA--NG--WFHSGDLAVKHPDNYIEIK 406
            +P  G+ +GEIV+ G  V KGY   P+A  EAF   +G  +F +GDL     + Y  I 
Sbjct: 378 ELP-PGE-VGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFIT 435

Query: 407 DRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELD 466
           DRLK +I + G  +   EVE +LY HP + EA V+A PD R GE+  A V L+PEA    
Sbjct: 436 DRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEA---- 491

Query: 467 KGKL-AEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKE 515
           +GK   E++  + R  M +Y  P+ V F  +LPKS +GKI    L+ + K 
Sbjct: 492 RGKTTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKA 542

Length = 546

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  194 bits (495), Expect = 6e-56
 Identities = 155/494 (31%), Positives = 236/494 (47%), Gaps = 55/494 (11%)

Query: 25  SPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEF 84
              D+V+++  N  A  E  F A   GAV   IN RL A  VA+IL  A + +++VD+EF
Sbjct: 50  GQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEF 109

Query: 85  FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFA 144
                      +A     L+TP +++      DS++L    A+G +E         P  A
Sbjct: 110 -----------DAIV--ALETPKIVIDAAAQADSRRL----AQGGLEI--------PPQA 144

Query: 145 WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFH 204
              P D  +   L YTSGTT  PKGV+ S+   +  S++  +  G+      L   P++H
Sbjct: 145 AVAPTDLVR---LMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYH 201

Query: 205 GNGWSYTWSLAALC-GTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT 262
              +     +A L  G ++ + R+   +AV  AI  H +T    APV+L+ +    P+  
Sbjct: 202 VGAFDLP-GIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVL-TVPDRD 259

Query: 263 ILPLTNVVNVNTAGAPPPPSLLFAMSQ--KGFRITHTYGLTELTGPASVCAWKPEWDSLP 320
              L ++      G   P S +   ++     R    YGLTE     ++     E + + 
Sbjct: 260 RFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIG 319

Query: 321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
              +A  +    +     DG      R    +P + K  GEI MRG  V KGY K+P+  
Sbjct: 320 STGRALAHVEIRIA----DG----AGRW---LPPNMK--GEICMRGPKVTKGYWKDPEKT 366

Query: 381 EEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 440
            EAF   WF SGD+     + ++ + DR KD+IISGGENI+S EVE+V+Y  P V EAAV
Sbjct: 367 AEAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAV 426

Query: 441 VARPDERWGESPCAFVTLKPEAD-ELDKGKLAEDVSKFCRAKMPSYWVPKS-VVFAALPK 498
           +   D+RWGE   A V L P A   L+       + + CR ++ S+ VP+   V   LP+
Sbjct: 427 IGVHDDRWGERITAVVVLNPGATLTLEA------LDRHCRQRLASFKVPRQLKVRDELPR 480

Query: 499 SATGKIQKHLLRAK 512
           + +GK+ K +LR +
Sbjct: 481 NPSGKVLKRVLRDE 494

Length = 497

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  191 bits (487), Expect = 8e-55
 Identities = 105/373 (28%), Positives = 160/373 (42%), Gaps = 38/373 (10%)

Query: 150 DEWQSIAL-GYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 208
           +E   +AL   + GTT  PK +  +H      +   A   G++ G V+L  LP  H    
Sbjct: 136 EELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTL 195

Query: 209 SYTWSLAAL--CGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPL 266
           S    L AL   GT +     +    +  I    VTH    P +LN    A+  D    L
Sbjct: 196 SSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQ-ADL 254

Query: 267 TNVVNVNTAGAPPPPSLLFAMSQKGF--RITHTYGLTE----LTGPASVCAWKPEWDSLP 320
           +++  +   GAP  P L     ++     +   +G+ E     T              + 
Sbjct: 255 SSLRVIQVGGAPLSPEL-ARRVEERLGCPLQQVFGMAEGLVNYTRLDDP-------PDVI 306

Query: 321 FETQARLNARQGVRTIC-LDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA 379
             TQ R         I   D + ++D +   PVP  G  +GE++ RG   ++GY + P+ 
Sbjct: 307 MRTQGR--------PISPADEIRIVDDQGE-PVP-PG-EVGELLTRGPYTIRGYYRAPEH 355

Query: 380 NEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEA 438
           N  AF  +G++ +GDL     D Y  +  R+KD I  GGE IS  E+E +L  HP V +A
Sbjct: 356 NARAFTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADA 415

Query: 439 AVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSV-VFAAL 496
           AVV  PDE  GE  CAFV  +             ++  F R + +  + +P  + V  +L
Sbjct: 416 AVVGMPDEVLGERICAFVVPRGG-AAPT----LAELRAFLREQGLAKFKLPDRLEVVDSL 470

Query: 497 PKSATGKIQKHLL 509
           P +  GK+ K  L
Sbjct: 471 PLTPVGKVDKKAL 483

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  191 bits (487), Expect = 1e-54
 Identities = 134/500 (26%), Positives = 206/500 (41%), Gaps = 62/500 (12%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             + V +I  + P    A +GA   GAV   IN  L      + L+ + + V+++ +E +
Sbjct: 54  RENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELW 113

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETG--DPEF 143
            + + AL+         L+  H+IV+G     +      L   A E  +   T   D  F
Sbjct: 114 EVLKPALQKDP-----HLR--HVIVVGGAGPGALSYA-QLIATAAEELEAAATSADDMAF 165

Query: 144 AWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMS-LNGALIWGMNEGAVFLWTLPM 202
                   W      Y+SG+T  PKGVV  H    + +      + G+ E  V      +
Sbjct: 166 --------WL-----YSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLGITEDDVVFSAAKL 212

Query: 203 FH----GNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA 257
           F     GNG  +  S+ A   T++ +  + T  AV+  I  +  T F   P +  A+  A
Sbjct: 213 FFAYGLGNGLYFPLSVGA---TTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAML-A 268

Query: 258 SPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASV------CA 311
           +PE     L+++    +AG   P  +       G+R    +GL  L G  S        +
Sbjct: 269 APEKPERDLSSLRLCVSAGEALPAEI-------GYRWKELFGLEILDGIGSTEMLHIFLS 321

Query: 312 WKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK 371
            +P   ++ + T  +      V+ +  DG +V D             IGE+ +RG     
Sbjct: 322 NRP--GAVKYGTSGKPVPGYEVKLVDEDGEEVADG-----------EIGELWVRGDSSAA 368

Query: 372 GYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 431
           GY    +   E F   W  +GD   +  D Y     R  D++   G  +S  EVE  L  
Sbjct: 369 GYWNRREKTRETFVGEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQ 428

Query: 432 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV 491
           HP VLEAAVV   DE     P AFV LK         +L  ++  F + K+  Y  P+ +
Sbjct: 429 HPAVLEAAVVGAEDEDGLTKPKAFVVLKDGYQ--PSPELETELKDFVKDKLAPYKYPRWI 486

Query: 492 VFAA-LPKSATGKIQKHLLR 510
            F   LPK+ATGKIQ+  LR
Sbjct: 487 EFVDELPKTATGKIQRFKLR 506

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  187 bits (478), Expect = 8e-53
 Identities = 125/405 (30%), Positives = 184/405 (45%), Gaps = 42/405 (10%)

Query: 126 ARGAIEYEKFLET--GDPEFAWKPPEDEWQSIAL-GYTSGTTASPKGVVVSHRGAYLMSL 182
           A G + +E  ++   G        P      +AL  YTSGTT  PKG  ++HR  +  + 
Sbjct: 190 APGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAA 249

Query: 183 NG-ALIWGMNEGA-VFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATH 239
            G A + G+ +G    L  LPMFH  G +   +LA   G  + L        +  A+  H
Sbjct: 250 QGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKH 309

Query: 240 GVTHFCAAPVVLNAIANASPEDTILPLTNVVN-VNTAGAPPPPSLLFAMSQKGFRITHTY 298
             T     P +   IA A+ E  +  L+ V N  + A A P  ++       G  +   Y
Sbjct: 310 PPTWLPGVPPLYEKIAEAAEERGV-DLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGY 368

Query: 299 GLTELTGPASVC-----AWKPEWDSLPF-ETQARLNARQGVRTICLDGLDVIDARTNQPV 352
           GLTE T P  V        +P +  +PF +T+ R                ++D       
Sbjct: 369 GLTE-TSPIIVGNPMSDDRRPGYVGVPFPDTEVR----------------IVDPEDPDET 411

Query: 353 PADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDV 412
             DG+  GE+++RG  V KGY   P+   ++F +GWF +GD+ V   D +I I DR+K++
Sbjct: 412 MPDGEE-GELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKEL 470

Query: 413 IISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAE 472
           II+GG N+   EVE+VL  HP V +AAVV  P E   E   A V L+P A  LD     E
Sbjct: 471 IITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAA-LD----PE 525

Query: 473 DVSKFCRAKMPSYWVPKS-VVFAALPKSATGKIQKHLLRAKAKEM 516
            +  +CR  +  Y VP+       LP+   GK+     R + +E 
Sbjct: 526 GLRAYCREHLTRYKVPRRFYHVDELPRDQLGKV----RRREVREE 566

Length = 573

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  183 bits (466), Expect = 2e-51
 Identities = 133/457 (29%), Positives = 190/457 (41%), Gaps = 55/457 (12%)

Query: 67  AFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALA 126
           A++L  A  + +IVD   F   E AL ++                      S  L++ L 
Sbjct: 102 AYVLEDAGISTLIVDPAPF--VERALALLA------------------RVPS--LKHVLT 139

Query: 127 RGAIEY-EKFLETGDPEFAWKPPEDEWQS---IALGYTSGTTASPKGVVVSHRGAYLMSL 182
            G +      L      F   P            L YT GTT  PKGV+ +HR    M+ 
Sbjct: 140 LGPVPDGVDLLAAAAK-FGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQ 198

Query: 183 NGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVT 242
                W       FL   P+ H  G  +  +L    GT I L +     V  AI    +T
Sbjct: 199 IQLAEWEWPADPRFLMCTPLSHAGGAFFLPTLL-RGGTVIVLAKFDPAEVLRAIEEQRIT 257

Query: 243 HFCAAPVVLNAIANASPEDTILPLTNVVNVNTA--GAPP--PPSLLFAMSQKGFRITHTY 298
                P ++ A+ +     T     ++ ++ T   GA P  P  L  A+ + G      Y
Sbjct: 258 ATFLVPTMIYALLDHPDLRT----RDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYY 313

Query: 299 GLTELTGPASVCAWKPEWDSLP--FETQARLNARQGVRTICLDGLDVIDARTNQPVPADG 356
           G TE     +    +      P    +  R     G+R   LD          + V    
Sbjct: 314 GQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTP--GLRVALLDEDG-------REVAQG- 363

Query: 357 KTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISG 416
             +GEI +RG  VM GY   P+   EAF +GW H+GD+A +  D +  I DR KD+I++G
Sbjct: 364 -EVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVDRKKDMIVTG 422

Query: 417 GENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK 476
           G N+   EVE VL  HP V + AV+  PDE+WGE+  A V L+P A  +D    A ++  
Sbjct: 423 GFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAA-VD----AAELQA 477

Query: 477 FCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAK 512
             + +  S   PK V F  +LP +A GK  K  LRA+
Sbjct: 478 HVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRAR 514

Length = 524

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  181 bits (460), Expect = 2e-51
 Identities = 120/481 (24%), Positives = 190/481 (39%), Gaps = 74/481 (15%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
             V+++  N   M        + GA +  +N RL        L      +++ D      
Sbjct: 25  SRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSLL--- 81

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
                K  +A+S  +++                      R                    
Sbjct: 82  ---EEKDFQADSLDRIEAA-------------------GRYETSLSASFNMDQI------ 113

Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 207
                    L +TSGTT  PK V  + R  Y  ++      G  E   +L +LP++H +G
Sbjct: 114 -------ATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISG 166

Query: 208 WSYTWSLAALCGTSICLRQVTAKA-VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPL 266
            S  +    + G +  LR V     +   IA   VTH    P  LN + +          
Sbjct: 167 LSILFR-WLIEGAT--LRIVDKFNQLLEMIANERVTHISLVPTQLNRLLDEG-----GHN 218

Query: 267 TNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 326
            N+  +   G+  P  L+    Q G  I  +YG+TE    + V    PE           
Sbjct: 219 ENLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETC--SQVTTATPEM---------- 266

Query: 327 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN 386
           L+AR  V    L G ++   +       + +  GEI+++G+ +MKGYL   +        
Sbjct: 267 LHARPDVGRP-LAGREI---KIKVD---NKEGHGEIMVKGANLMKGYLYQGELTPAFEQQ 319

Query: 387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 446
           GWF++GD+     + ++ +  R  D+IISGGENI   E+E VLY HP + EA VV +PD 
Sbjct: 320 GWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDA 379

Query: 447 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 505
            WG+ P A++    E+D   + KL      +   K+  Y VP +      LP +A+GKI 
Sbjct: 380 EWGQVPVAYIVS--ESDI-SQAKL----IAYLTEKLAKYKVPIAFEKLDELPYNASGKIL 432

Query: 506 K 506
           +
Sbjct: 433 R 433

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  174 bits (443), Expect = 9e-50
 Identities = 108/380 (28%), Positives = 162/380 (42%), Gaps = 60/380 (15%)

Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWS 213
           A+ YTSG+T  PKGV++SHR   L +   ++     + E    L  LP     G      
Sbjct: 6   AIIYTSGSTGEPKGVMLSHRN--LTAGARSIAQYLELTEDDRILAVLPFSFDYG-LSQLL 62

Query: 214 LAALCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 271
            A   G ++ L  R    + V   +A   +T F   P     +    P        ++  
Sbjct: 63  TAFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAR-EDFPSLRY 121

Query: 272 V-NTAGAPPPPSL-----------LFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL 319
           + N  GA P  ++           LF+M          YGLTE    A    +      L
Sbjct: 122 LTNAGGALPAKTILQLRRAFPDAKLFSM----------YGLTE----AFRSTY------L 161

Query: 320 PFETQARLNARQGVRTICLDG--LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP 377
           P E    L+ R       +    L V+D   N+  P +   +GE+V RG+ VMKGY  +P
Sbjct: 162 PPE---ELDRRPDSIGKAIPNVELWVVDEDGNRCAPGE---VGELVHRGANVMKGYWNDP 215

Query: 378 KANEEAFA------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 431
           +A  E             ++GDL     + Y+    R  D+I + G  +S  E+E+V+  
Sbjct: 216 EATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICA 275

Query: 432 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV 491
           HPLV EAAV+  PD   G++  A V         +K     ++ K CR  +P+Y VP  +
Sbjct: 276 HPLVAEAAVIGVPDPLLGQAIVAVVVSADGESLDEK-----ELLKHCRKHLPNYMVPAEI 330

Query: 492 VF-AALPKSATGKIQKHLLR 510
           VF  +LPK+A GK+ +  LR
Sbjct: 331 VFVDSLPKNANGKVDRSALR 350

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  178 bits (455), Expect = 1e-49
 Identities = 92/238 (38%), Positives = 126/238 (52%), Gaps = 30/238 (12%)

Query: 294 ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA--RQGVRTI--CLDGLDV--IDAR 347
           +T  YG+TE T P S              TQ R +    + V T+   L  L+V  +D  
Sbjct: 344 VTIAYGMTE-TSPVS--------------TQTRTDDPLEKRVTTVGRALPHLEVKIVDPE 388

Query: 348 TNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIK 406
           T + VP      GE+  RG  VMKGY  +P+   EA  A+GW H+GDLAV   + Y+ I 
Sbjct: 389 TGETVPRG--EQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIV 446

Query: 407 DRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELD 466
            R+KD+II GGENI   E+E+ LY HP + +  VV  PDE++GE  CA++ L+P A  L 
Sbjct: 447 GRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGA-TLT 505

Query: 467 KGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKEMGPVKMIK 523
                EDV  FCR K+  Y +P+ + F    P + TGKIQK  +R    E   ++  K
Sbjct: 506 ----EEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEELGLQAAK 559

Length = 559

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score =  178 bits (453), Expect = 1e-49
 Identities = 158/510 (30%), Positives = 217/510 (42%), Gaps = 78/510 (15%)

Query: 28  DLVSVIAPN---VPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEF 84
           D+VS   PN     A+Y A       GAVLN +        ++F+L+HA S V +V   F
Sbjct: 79  DVVSFQLPNRWEFTALYLA---CARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVF 135

Query: 85  FSLAEEALKMMEANSEGKLKTPHL--IVIGDESCDSKQLEYALARGAIEYEKFLETGD-- 140
                 A   M    + KL  P L  +V+ D              G   +++ L T +  
Sbjct: 136 RGFDHAA---MARELQSKL--PALRQVVVID------------GDGDDSFDRVLMTPERD 178

Query: 141 --PEFAWK------PPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGM-- 190
             P+ A         P+D  Q I   YTSGTT  PKGV+  H    L S        +  
Sbjct: 179 DTPDAAAILAGPRPSPDDVTQLI---YTSGTTGEPKGVM--HTANTLFSNIHPYAERLEL 233

Query: 191 NEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQV--TAKAVYTAIATHGVTHFCAAP 248
             G V L   PM H  G+ Y   +  +   +  L+ +   A+A    I   GVT   A+ 
Sbjct: 234 GGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAA-ELIRETGVTFTMAST 292

Query: 249 VVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLL-FAMSQKGFRITHTYGLTELTGPA 307
             L  +  A  E    P+ ++     AGAP P  L+  A    G  I   +G+TE     
Sbjct: 293 PFLTDLCRAVKESG-APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTE---NG 348

Query: 308 SVCAWKPEWDSLPFETQARLNARQGVRTIC-LDGLDVIDARTNQPVPADGKT-----IGE 361
           +V   +P               +        L G++V      + + A+G        G 
Sbjct: 349 AVTVTEP----------DDALEKASTTDGRPLPGVEV------KVIDANGAKLSQGETGR 392

Query: 362 IVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENIS 421
           +++RG     GYLK P  N    A GWF +GDLA +  + YI I  R KDVII GGENI 
Sbjct: 393 LLVRGCSNFGGYLKRPHLNSTD-AEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIP 451

Query: 422 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK 481
            VE+E +LY HP V + A+VA PDER GE  CA V  KP    LD   +   +      K
Sbjct: 452 VVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCT-LDFAAMVAFLK---AQK 507

Query: 482 MPSYWVPKS-VVFAALPKSATGKIQKHLLR 510
           +   ++P+   V  ALP +  GKIQK  LR
Sbjct: 508 VALQYIPERLEVVDALPATPAGKIQKFRLR 537

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  178 bits (452), Expect = 2e-49
 Identities = 149/534 (27%), Positives = 214/534 (40%), Gaps = 94/534 (17%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
           P D V + APN       QF     GA+L +IN    A+ + + L  +    VI    F 
Sbjct: 69  PGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFK 128

Query: 86  S-----LAEEALKMMEANSEGKL---KTPHL--IVIGDESCDSKQLEYA--LARGAI--- 130
           +     + +E L  +     G L   + P L  +V    +     L +    ARG     
Sbjct: 129 TSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSR 188

Query: 131 ----EYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL 186
               E +  L+  DP             I + YTSGTT  PKG  +SH       LN   
Sbjct: 189 EALAERQASLDRDDP-------------INIQYTSGTTGFPKGATLSHHNI----LNNGY 231

Query: 187 I----WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYT--AIATHG 240
                 G+ E       +P++H  G           G  +         + T  A+    
Sbjct: 232 FVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEER 291

Query: 241 VTHFCAAPVVLNAIANAS-PEDTILPLTNVVNVNTAGAPPPPSLL------FAMSQKGFR 293
            T     P +   IA    P+     L+++     AGAP P  ++        M++    
Sbjct: 292 CTALYGVPTMF--IAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAE---- 345

Query: 294 ITHTYGLTE------LTGPASVCAWKPEWDSLP--FETQARLNARQGVRTICLDGLDVID 345
           +   YG+TE       T  A         D L    ET  R      V+ +  DG     
Sbjct: 346 VQIAYGMTETSPVSLQTTAA---------DDLERRVETVGRTQPHLEVKVVDPDG----- 391

Query: 346 ARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIE 404
                 VP     IGE+  RG  VMKGY  NP+A  E+   +GW H+GDLA      Y+ 
Sbjct: 392 ----ATVPRG--EIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVR 445

Query: 405 IKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKP--EA 462
           I  R KD+II GGENI   E+E+ L+ HP V +  V   PDE++GE   A+V L P   A
Sbjct: 446 IVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAA 505

Query: 463 DELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKE 515
            E       E++ +FC+A++  + VP+   F    P + TGK+QK  +R  + E
Sbjct: 506 SE-------EELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIE 552

Length = 558

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  172 bits (439), Expect = 3e-49
 Identities = 118/380 (31%), Positives = 162/380 (42%), Gaps = 46/380 (12%)

Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 215
           A  +T GTT +PK    SHR     +   AL+ G+  G V L  LP+FH  G +    LA
Sbjct: 6   AYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGG-AIVTGLA 64

Query: 216 ALC-------GTSICLRQVTAKA-VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 267
            L         T    R     A  +  +  + VT   A P VL A+      D    ++
Sbjct: 65  PLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGDA--DIS 122

Query: 268 NVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 326
           ++    T  AP P  +        G  +   YG+TE TG +++                 
Sbjct: 123 SLRYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAI----------------- 165

Query: 327 LNARQGVRTICLDGLDV---------IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP 377
            N R G R     GL +         +DA            +G + +RG  V  GYL N 
Sbjct: 166 -NPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYL-ND 223

Query: 378 KANEEA-FANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL 436
             N  A   +GW ++GDL     D Y+ +  R KD+II GG NI    +E+ L  HP V 
Sbjct: 224 AHNAGARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVA 283

Query: 437 EAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAA 495
            AA V RPD   GE P A+V LKP A  + +G+L   V      +  +  VPK++ +  A
Sbjct: 284 LAAAVGRPDAYAGELPVAYVQLKPGAT-VTEGELLAFVKA-RIPERAA--VPKAIYIIDA 339

Query: 496 LPKSATGKIQKHLLRAKAKE 515
           LP +A GKI K  LR  A E
Sbjct: 340 LPLTAVGKIFKPRLRCDAAE 359

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  174 bits (444), Expect = 4e-49
 Identities = 105/369 (28%), Positives = 149/369 (40%), Gaps = 42/369 (11%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWS---- 213
           +TSGTT  PK V+ +H       + GA    +    +  WT+      GW+   WS    
Sbjct: 88  FTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLH-WTIA---DPGWAKGAWSSLFA 143

Query: 214 --LAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP-LTNVV 270
             L          R+  A+     +  +GVT FCA P     +            L +VV
Sbjct: 144 PWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRMLLQQDLSSYDFSHLRHVV 203

Query: 271 NVNTAGAP-PPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 329
              +AG P  P  + +  +  G  I   YG TE     +                     
Sbjct: 204 ---SAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGME--------------V 246

Query: 330 RQGVRTICLDGLDV--IDARTNQPVPADGKTIGEIVMRGSC----VMKGYLKNPKANEEA 383
           + G       G  V  ID   N+  P +    G+I +R       + +GYLK+P+  E  
Sbjct: 247 KPGSMGRPAPGYRVAIIDDEGNELPPGE---EGDIAVRVKPRPPGLFRGYLKDPEKTEAT 303

Query: 384 FANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 443
               W+ +GD A+K  D Y     R  DVI S G  I   EVE  L  HP V EAAVV  
Sbjct: 304 IRGDWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGS 363

Query: 444 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATG 502
           PD   GE   AFV L P        +LA+++ +  + +   Y  P+ + F   LPK+ +G
Sbjct: 364 PDPVRGEVVKAFVVLAP--GYQPSEELAKELQEHVKKRTAPYKYPREIEFVEELPKTVSG 421

Query: 503 KIQKHLLRA 511
           KI++  LRA
Sbjct: 422 KIRRVELRA 430

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  173 bits (442), Expect = 8e-49
 Identities = 108/361 (29%), Positives = 157/361 (43%), Gaps = 32/361 (8%)

Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 215
            + YTSGTT  PKGVV++H      +      W      V L  LP+ H +G        
Sbjct: 92  LIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNALHCP 151

Query: 216 ALCGTS-ICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN--V 272
              G S   L +   +          +T F   P +   +     E          N  +
Sbjct: 152 LWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLL-EHYEFDDAAAAAARNLRL 210

Query: 273 NTAG-APPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNAR 330
             +G A  P  +L    ++ G  +   YG+TE TG A          S P + + R    
Sbjct: 211 FVSGSAALPVPVLERWEERTGHTLLERYGMTE-TGMAL---------SNPLDGERR---- 256

Query: 331 QGVRTICLDGLDV--IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANG 387
            G   + L G++V  +D    +P+ A    +GEI +RG  V   Y   P+A  EAF  +G
Sbjct: 257 PGTVGLPLPGVEVRIVDEDGGEPLAAG--EVGEIQVRGPNVFSEYWNKPEATAEAFTEDG 314

Query: 388 WFHSGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVEVEKVLYLHPLVLEAAVVARPDE 446
           WF +GD+ V   D Y  I  R  D II SGG  +S++E+E+ L  HP V E AV+  PD 
Sbjct: 315 WFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDP 374

Query: 447 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 505
            WGE+  A V  +  A          ++  + R K+  Y +PK V+    LP++A GK+Q
Sbjct: 375 DWGEAVVAVVVPEAGAAL-----TLAELRAWAREKLAPYKIPKRVIVVDELPRNAMGKVQ 429

Query: 506 K 506
           K
Sbjct: 430 K 430

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score =  176 bits (449), Expect = 1e-48
 Identities = 146/516 (28%), Positives = 222/516 (43%), Gaps = 59/516 (11%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
             V  +  N     E  F     GAV N +N +L    +  I++HA   V++ D     L
Sbjct: 65  QRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPR---L 121

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
           AE+  ++++           ++ IG    DS             YE  L+     + W P
Sbjct: 122 AEQLGEILKECP----CVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDW-P 176

Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYL--MSLNGALIWGMNEGAVFLWTLPMFHG 205
             DE  + A+ Y++GTT +PKGVV SHR  YL  +SL       +  G  FL  +P++H 
Sbjct: 177 ELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHV 236

Query: 206 NGWSYTWSLAA-LCGTSICL--RQVTAKAVYTAIAT------HGVTHFCAAPVVLNAIAN 256
             W     LAA + GT +      ++A  +   IAT      HGV       +V      
Sbjct: 237 LSWGV--PLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMV--HYLK 292

Query: 257 ASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPE 315
             PE   L       +   G+  PP L+ A  ++ G  + H +G+TE T P    A  P 
Sbjct: 293 NPPERMSLQ-----EIYVGGSAVPPILIKAWEERYGVDVVHVWGMTE-TSPVGTVARPPS 346

Query: 316 WDSLPFETQARLNAR--QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY 373
             S     +AR   R  QG     L+   V D +    + +  +  GEI +RG+ V   Y
Sbjct: 347 GVS----GEARWAYRVSQGRFPASLEYRIVNDGQV---MESTDRNEGEIQVRGNWVTASY 399

Query: 374 LKNP-----------------KANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISG 416
             +P                  AN+   A+GW  +GD+     D ++ I DR +DVI SG
Sbjct: 400 YHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSG 459

Query: 417 GENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK 476
           GE I S ++E  +   P V+E AV+  PD++WGE P A   L P  +     + AE +  
Sbjct: 460 GEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEP--TRETAERLRD 517

Query: 477 FCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRA 511
             R ++P++ +P+   F   + K++ GK  K  LR 
Sbjct: 518 QLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQ 553

Length = 576

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  175 bits (447), Expect = 4e-48
 Identities = 144/519 (27%), Positives = 201/519 (38%), Gaps = 63/519 (12%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV----- 80
           P D+V+ + PN+P  + A +G   AG   N IN  L    +A +L  A + V++      
Sbjct: 82  PGDVVAFLLPNLPETHFALWGGEAAGIA-NPINPLLEPEQIAELLRAAGAKVLVTLGPFP 140

Query: 81  DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARG--AIEYEKFLET 138
             + +    E L  +       L+T   + +       K+L   L R         F   
Sbjct: 141 GTDIWQKVAEVLAALPE-----LRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAE 195

Query: 139 -----GDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEG 193
                GD  F+ +P   +    A  +T GTT  PK    +H      +  GAL+ G+  G
Sbjct: 196 LARQPGDRLFSGRPIGPD-DVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPG 254

Query: 194 AVFLWTLPMFHGNGWSYTWSLAALC-------GTSICLRQVTAKAVYTAI-ATHGVTHFC 245
                 LP+FH N       LA L         T    R     A +  I   + +    
Sbjct: 255 DTVFCGLPLFHVNA-LLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLS 313

Query: 246 AAPVVLNAIANASPEDTILPLTNVVNVNTA--GAPPPPSLLFA--MSQKGFRITHTYGLT 301
             P V  A+     +       ++ ++  A  GA P P  +F    +  G RI   YGLT
Sbjct: 314 GVPTVYAALLQVPVDG-----HDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLT 368

Query: 302 ELTGPASVCAW-----KPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADG 356
           E T   S         +     L    Q        VR + LD       R  +    D 
Sbjct: 369 EATC-VSSVNPPDGERRIGSVGLRLPYQR-------VRVVILDD----AGRYLRDCAVDE 416

Query: 357 KTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISG 416
             +G + + G  V  GYL+          +GW ++GDL     D Y  +  R KD+II G
Sbjct: 417 --VGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRG 474

Query: 417 GENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK 476
           G NI    +E+ L  HP V  AA V RPD   GE P A+V LKP A    + +L      
Sbjct: 475 GHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGAS-ATEAELLA---- 529

Query: 477 FCRAKMPS-YWVPKSVVF-AALPKSATGKIQKHLLRAKA 513
           F R  +     VPK V    ALPK+A GKI K  LR  A
Sbjct: 530 FARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRRDA 568

Length = 632

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  170 bits (433), Expect = 3e-47
 Identities = 124/495 (25%), Positives = 199/495 (40%), Gaps = 70/495 (14%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             + ++V+A N   +    F     GA+   +N RL+A+ +  +L  A            
Sbjct: 46  DGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDAE----------- 94

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
                               P L++  D     +     LA          +  +P    
Sbjct: 95  --------------------PRLLLGDDAVAAGRTDVEDLAAFIAS----ADALEPADTP 130

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
             P +   S+ L +TSGT+  PKGV++S R     + N  ++  ++  + FL   PMFH 
Sbjct: 131 SIPPER-VSLIL-FTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHI 188

Query: 206 NGWSYTWSLAALCGTSICLR---QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT 262
            G   +       G SI +    +             G+TH+   P +  A   A P   
Sbjct: 189 IGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAF-RAQPGFD 247

Query: 263 ILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTE---LTGPASVCAWKPEWDSL 319
              L ++  + T GAP     +      G  +   +G++E   + G +  C         
Sbjct: 248 AAALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSVDCD-------- 299

Query: 320 PFETQARLNARQGVRTICLDG--LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP 377
                  + A+ G   I        V+D + N   PA     GE+++RG  +  GY + P
Sbjct: 300 ------VIRAKAGAAGIPTPTVQTRVVDDQGND-CPAG--VPGELLLRGPNLSPGYWRRP 350

Query: 378 KANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL 436
           +A   AF  +GWF +GD+A +  D +  + DR KD+ ISGGEN+   E+E VL  HP + 
Sbjct: 351 QATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIR 410

Query: 437 EAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAA 495
           E AVV   D +WGE     +     A         E +      ++  Y VPK + +  A
Sbjct: 411 ECAVVGMADAQWGEVGYLAIVPADGAP-----LDLERIRSHLSTRLAKYKVPKHLRLVDA 465

Query: 496 LPKSATGKIQKHLLR 510
           LP++A+GK+QK  LR
Sbjct: 466 LPRTASGKLQKARLR 480

Length = 488

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score =  168 bits (428), Expect = 5e-46
 Identities = 146/515 (28%), Positives = 221/515 (42%), Gaps = 61/515 (11%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D + V + N   M+E+ F A   GAV    N R     VA+ L+ AS A  ++    F
Sbjct: 56  KGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAY-LAEASGARAMICHADF 114

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALAR--GAIEYEKFLETGDPEF 143
              E A     A         H++ IG  +      E  +AR  GA      ++  DP  
Sbjct: 115 --PEHA----AAVRAASPDLTHVVAIG-GARAGLDYEALVARHLGARVANAAVDHDDP-- 165

Query: 144 AWKPPEDEWQSIALGYTSGTTASPKGVVVSH-RGAYLMSLNGA-LIWGMNEGAVFLWTLP 201
            W             +TSGTT  PK  V++H + A++++ + A L+ G  E    L   P
Sbjct: 166 CW-----------FFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAP 214

Query: 202 MFHGNGWSYTWSLAALCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASP 259
           + HG G      +A     ++ L   +     V+  +  H VT+    P +L  +    P
Sbjct: 215 LSHGAGIHQLCQVAR-GAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVE-HP 272

Query: 260 EDTILPLTNVVNVNTAGAPPPPSLLFAMSQK------GFRITHTYGLTELTGPASVCAWK 313
                  +++  V  AGAP     ++   QK      G  +   +GL E+TG  +V    
Sbjct: 273 AVDRYDHSSLRYVIYAGAP-----MYRADQKRALAKLGKVLVQYFGLGEVTGNITVLP-- 325

Query: 314 PEWDSLPFETQARLN----ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV 369
           P          AR+      R G+       + + D      +P  G+T GEI + G  V
Sbjct: 326 PALHDAEDGPDARIGTCGFERTGME------VQIQDDEGR-ELPP-GET-GEICVIGPAV 376

Query: 370 MKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
             GY  NP+AN +AF +GWF +GDL       ++ I  R  D+ ISGG N+   E+E+ L
Sbjct: 377 FAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKL 436

Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
             HP V E AV+  PD  WGE   A    +  A  +D+ +L      +   K+  Y +PK
Sbjct: 437 LTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAP-VDEAELLA----WLDGKVARYKLPK 491

Query: 490 SVVF-AALPKSATGKIQKHLLRAKAKEMGPVKMIK 523
              F  ALPKS  GKI K ++R + +E G + + +
Sbjct: 492 RFFFWDALPKSGYGKITKKMVREELEERGLLDLER 526

Length = 528

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score =  167 bits (424), Expect = 2e-45
 Identities = 132/501 (26%), Positives = 195/501 (38%), Gaps = 65/501 (12%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V+++  N     +   G    GA+   IN  L    +  IL ++ + +++V+    
Sbjct: 70  RGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAAL- 128

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
                 L  +EA   G L  P + ++   +  S    +                    A 
Sbjct: 129 ------LAALEAADPGDLPLPAVWLLDAPASVSVPAGW----STAPLPPLDAPAPA--AA 176

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
             P D   + A+ YTSGTT   KGV   H   Y    N A    +    V   TLP+FH 
Sbjct: 177 VQPGD---TAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHT 233

Query: 206 NGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN------AS 258
           N  +  +  A L G +  L  + +A   + A+  HG T       +L A+ +      A 
Sbjct: 234 NALN-AFFQALLAGATYVLEPRFSASGFWPAVRRHGAT----VTYLLGAMVSILLSQPAR 288

Query: 259 PEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDS 318
             D      + V V      P         + G  +   YG TE     +V         
Sbjct: 289 ESDR----AHRVRVALGPGVPAALHAAFRERFGVDLLDGYGSTETNFVIAV--------- 335

Query: 319 LPFETQARLNARQGVRTICLDGLDVIDART----NQPVPADGKTIGEIVMRGS---CVMK 371
                    + R G       G    +AR     +Q +P      GE+++R         
Sbjct: 336 ------THGSQRPGSMGRLAPG---FEARVVDEHDQELPDG--EPGELLLRADEPFAFAT 384

Query: 372 GYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 431
           GY   P+   EA+ N WFH+GD  V+  D +    DR+KD I   GENISS EVE+VL  
Sbjct: 385 GYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLS 444

Query: 432 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV 491
           HP V  AAV   P E   +   A V L+     L+       + + C  ++  + VP+ V
Sbjct: 445 HPAVAAAAVFPVPSELGEDEVMAAVVLRD-GTALE----PVALVRHCEPRLAYFAVPRYV 499

Query: 492 VF-AALPKSATGKIQKHLLRA 511
            F AALPK+  GK+QK +LR 
Sbjct: 500 EFVAALPKTENGKVQKFVLRE 520

Length = 542

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  163 bits (415), Expect = 3e-44
 Identities = 131/481 (27%), Positives = 192/481 (39%), Gaps = 66/481 (13%)

Query: 50  AGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHL- 108
            GAV   +        + ++L+   + +      F       L +   N     + P L 
Sbjct: 97  VGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQN-----QLPQLQ 151

Query: 109 -IVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASP 167
            IV  D+         A A  ++   + +   +P           +  A+ +TSGT   P
Sbjct: 152 QIVGVDKL--------APATSSLSLSQIIADYEP-LTTAITTHGDELAAVLFTSGTEGLP 202

Query: 168 KGVVVSHRG------AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTS 221
           KGV+++H        AY   LN      +    VF+   P+ H  G+ +  +   L G  
Sbjct: 203 KGVMLTHNNILASERAYCARLN------LTWQDVFMMPAPLGHATGFLHGVTAPFLIGAR 256

Query: 222 ICLRQV-TAKAVYTAIATHGVT-HFCAAPVV---LNAIANASPEDTILPLTNVVNVNTAG 276
             L  + T  A    +     T    A P +   LN +     + + L           G
Sbjct: 257 SVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRF-----FLCGG 311

Query: 277 APPPPSLLFAMSQKGFRITHTYGLTE-----LTGPASVCAWKPEWDSLPFETQARLNARQ 331
              P  +     Q+G ++   YG TE     +       +     D              
Sbjct: 312 TTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAA--------- 362

Query: 332 GVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFH 390
           GV    +D     +AR  + +P   +  GE   RG  V  GYL  P+    A    GW++
Sbjct: 363 GVEIKVVD-----EAR--KTLPPGCE--GEEASRGPNVFMGYLDEPELTARALDEEGWYY 413

Query: 391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 450
           SGDL       YI+I  R KD+I+ GGENISS EVE +L  HP + +A VVA PDER GE
Sbjct: 414 SGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGE 473

Query: 451 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFAALPKSATGKIQKHLL 509
             CA+V LK     L    L E V+ F R ++  Y +    VV   LP++A+GKIQK LL
Sbjct: 474 RSCAYVVLKAPHHSL---TLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLL 530

Query: 510 R 510
           R
Sbjct: 531 R 531

Length = 547

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score =  160 bits (406), Expect = 9e-44
 Identities = 101/365 (27%), Positives = 147/365 (40%), Gaps = 39/365 (10%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMS-LNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAAL 217
           YTSGTT  PKGV+  HR     +      + G+  G     +  +F   G   +      
Sbjct: 98  YTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLFPLF 157

Query: 218 CGTS--ICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN--ASPEDTILPLTNVVNVN 273
            G S  +     T +AV   +A H  T     P +  A+    A        +   V   
Sbjct: 158 SGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRALLESGAGSAPLFRSVRLCV--- 214

Query: 274 TAGAPPPPSLL-FAMSQKGFRITHTYGLTE---LTGPASVCAWKPEWDSLP---FETQAR 326
           +AG   P  L        G  I    G TE   +       A +P     P   +E  AR
Sbjct: 215 SAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAARPGTTGRPVPGYE--AR 272

Query: 327 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN 386
           L    G                 + VPA   T+G++ +RG  +  GY   P+  +    +
Sbjct: 273 LVDESG-----------------REVPAG--TVGDLWVRGPSLAPGYWNLPEKTQRTLRD 313

Query: 387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 446
           GW  +GD   +  D +   + R  D+I   G+ +S +EVE  L  HP V EAAVVA PDE
Sbjct: 314 GWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDE 373

Query: 447 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQ 505
                  AFV  +P      +  L  D+ +F R ++  Y  P+ + F   LP++ATGK+Q
Sbjct: 374 DGLVRLKAFVVPRPGEA--IQQLLERDLHRFLRERLAPYKCPRQIEFLDTLPRTATGKLQ 431

Query: 506 KHLLR 510
           +  LR
Sbjct: 432 RFRLR 436

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score =  157 bits (398), Expect = 4e-42
 Identities = 131/501 (26%), Positives = 185/501 (36%), Gaps = 56/501 (11%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V++   N     E  + A  +G     +N  L     A+I+  + +  +I      
Sbjct: 48  RGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKL 107

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ-LEYALARGAIEYEKFLETGDPEFA 144
            +A   LK              L++ GD   +       A+A            G P   
Sbjct: 108 DVARALLKQCPG------VRHRLVLDGDGELEGFVGYAEAVA------------GLPA-- 147

Query: 145 WKPPEDEWQSIALGYTSGTTASPKGVV-------VSHRGAYLMSLNGALIWGMNEGAVFL 197
             P  DE     + Y+SGTT  PKG+                  L     WG     V+L
Sbjct: 148 -TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRL--WGFRSDMVYL 204

Query: 198 WTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA 257
              P++H         +  L GT I +    A+     I  +GVTH    P + + +   
Sbjct: 205 SPAPLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKL 264

Query: 258 SPEDTILP--LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHT-YGLTELTGPASVCAWKP 314
            PE+      L+++     A AP PP +   M      I H  Y  TE  G  + C    
Sbjct: 265 -PEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLG-FTACD-SE 321

Query: 315 EWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYL 374
           EW + P  T  R  A  G   I  D            +P      G I   G    + YL
Sbjct: 322 EWLAHP-GTVGR--AMFGDLHILDDDG--------AELPP--GEPGTIWFEGGRPFE-YL 367

Query: 375 KNPKANEEAFA--NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 432
            +P    EA      W   GD+     D Y+ + DR   +IISGG NI   E E +L  H
Sbjct: 368 NDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITH 427

Query: 433 PLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV 492
           P V +AAV   P+E  GE   A V      D      LA ++  FCR ++     P+S+ 
Sbjct: 428 PKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGP--ALAAELIAFCRQRLSRQKCPRSID 485

Query: 493 FAA-LPKSATGKIQKHLLRAK 512
           F   LP+  TGK+ K LLR +
Sbjct: 486 FEDELPRLPTGKLYKRLLRDR 506

Length = 511

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  154 bits (390), Expect = 9e-41
 Identities = 131/499 (26%), Positives = 205/499 (41%), Gaps = 58/499 (11%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           D+V ++ PN              G ++ ++N   +   +   +   S  +       F+ 
Sbjct: 93  DVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLA------FTS 146

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
            E   K+        L  P + V  +   DSK++E+      I         D +F  KP
Sbjct: 147 PENVEKL------SPLGVPVIGVPENYDFDSKRIEFPKFYELI-------KEDFDFVPKP 193

Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLM-----SLNGALIWGMNEGAVFLWTLPM 202
              +    A+ Y+SGTT + KGVV++HR    M         +         V+L  LPM
Sbjct: 194 VIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPM 253

Query: 203 FHGNGWS-YTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED 261
           FH  G S +   L +L  T + +R+  A  +   I    VTHF   P +L A+   +   
Sbjct: 254 FHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV 313

Query: 262 TILPLTNVVNVNTAGAPPPPSLL--FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL 319
               L ++  V+   AP     +  F  +         YG+TE T   +           
Sbjct: 314 CGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGT----------- 362

Query: 320 PFETQARLNARQGVRTICLDGL------DVIDARTNQPVPADGKTIGEIVMRGSCVMKGY 373
                   N  +  +   +  L       V+D  T   +P      GE+ ++G  VMKGY
Sbjct: 363 -----RGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNC--GELWIQGPGVMKGY 415

Query: 374 LKNPKANEEAFAN-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 432
           L NPKA +      GW  +GD+A    D Y+ I DRLK++I   G  I+  ++E VL  H
Sbjct: 416 LNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISH 475

Query: 433 PLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV 492
           P +++AAV A PD+  GE P AFV  +  +         E V  +   ++  Y   + VV
Sbjct: 476 PEIIDAAVTAVPDKECGEIPVAFVVRRQGS-----TLSQEAVINYVAKQVAPYKKVRKVV 530

Query: 493 FA-ALPKSATGKIQKHLLR 510
           F  ++PKS  GKI +  L+
Sbjct: 531 FVQSIPKSPAGKILRRELK 549

Length = 560

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  151 bits (383), Expect = 2e-40
 Identities = 112/377 (29%), Positives = 156/377 (41%), Gaps = 54/377 (14%)

Query: 157 LGYTSGTTASPKGVVVSHR------GAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY 210
           L YTSGTT  PKG +  HR          +            G VF WT P      W++
Sbjct: 93  LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFE----LAPRPGDVF-WT-PA----DWAW 142

Query: 211 TWSL------AALCGTSIC---LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE- 260
              L      A   G  +    +++   +  +  +  +GVT+    P  L  +     E 
Sbjct: 143 IGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKMMRRVGSER 202

Query: 261 -DTILPLTNVVNVNTAGAPPPPSLL-FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDS 318
               L L  V    + G      LL +A  + G  +   YG TE       CA       
Sbjct: 203 ARYDLRLRAVA---SGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCA------- 252

Query: 319 LPFETQARLNARQGVRTICLDG--LDVIDARTNQPVPADGKTIGEI-VMRGSCVM-KGYL 374
                 A   AR G     + G  + V+D    +PVP     +GEI V R   VM  GY 
Sbjct: 253 ------ALGPARPGSMGKPVPGHEVAVVDDA-GRPVPPG--EVGEIAVKRPDPVMFLGYW 303

Query: 375 KNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPL 434
            NP+A    FA  W  +GDL  +  D Y+  K R  DVI S G  I   E+E+ L  HP 
Sbjct: 304 NNPEATAAKFAGDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPA 363

Query: 435 VLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF- 493
           VLEAAVV  PD   GE   AFV L          +LA ++ +  ++++ ++  P+ + F 
Sbjct: 364 VLEAAVVGVPDPERGEIVKAFVVLAE--GVEPSDELATELQELVKSRLAAHEYPREIEFV 421

Query: 494 AALPKSATGKIQKHLLR 510
             LP + TGKI++  LR
Sbjct: 422 DELPMTTTGKIRRRELR 438

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  151 bits (382), Expect = 1e-39
 Identities = 143/502 (28%), Positives = 222/502 (44%), Gaps = 47/502 (9%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           D V+++ PN P      +G  +AG ++   N       + + L H S A VI+  +    
Sbjct: 75  DRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQL-HDSGAKVILCLDL--- 130

Query: 88  AEEALKMMEANSEGKLKTPHLIV--IGDESCDSKQLEYA-LARGAIEYEKFLETGDPEFA 144
               +     N +   K  H+IV  I D     K L Y  + +        +   +    
Sbjct: 131 ----VFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHL 186

Query: 145 WKPPEDEWQSIA------------LGYTSGTTASPKGVVVSHRGAYLMSLNGA-LIWGMN 191
           W   E E  +              L YT GTT  PKGV+++H+     +L G   ++   
Sbjct: 187 WNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCK 246

Query: 192 EGA-VFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPV 249
           EG  V L  LP FH  G +   +L+ + G  + L  +   K V+ AI  H VT F  AP 
Sbjct: 247 EGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPT 306

Query: 250 VLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPAS 308
           +  A+ N SP      ++++    +  AP P  +        G ++   YGLTE + P +
Sbjct: 307 IYIALLN-SPLLKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTE-SSPVT 364

Query: 309 VCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC 368
                       F  + R+    GV     + + ++   T + +P     IGEIV++G  
Sbjct: 365 ---------HSNFLWEKRVPGSIGVPWPDTEAM-IMSLETGEALPPG--EIGEIVVKGPQ 412

Query: 369 VMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKV 428
           +MKGY   P+       +GW H+GD+     D +  +KDR KD+I++ G N+   EVE+V
Sbjct: 413 IMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEV 472

Query: 429 LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP 488
           LY H  V E   +  PD   GE+  AFV LK E  E  +    E++++F R  + +Y VP
Sbjct: 473 LYEHEKVQEVVTIGVPDPYRGETVKAFVVLK-EGTECSE----EELNQFARKYLAAYKVP 527

Query: 489 KSVVF-AALPKSATGKIQKHLL 509
           K   F   LPK+  GKI + +L
Sbjct: 528 KVYEFRDELPKTTVGKILRRVL 549

Length = 563

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score =  149 bits (378), Expect = 3e-39
 Identities = 131/504 (25%), Positives = 197/504 (39%), Gaps = 66/504 (13%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           D+V+++  N P  +E  + A  +G     IN  L A  +A+I+  + + V+IV       
Sbjct: 37  DVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADT 96

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
           A E    + A        P L+V+                G   YE+ L          P
Sbjct: 97  AAELAAELPAG------VPLLLVVAGP-----------VPGFRSYEEALAAQPDT----P 135

Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRG-----AYLMSLNGALIWG-MNEGAVFLWTLP 201
             DE     + Y+SGTT  PKG+     G     A  M L            +V+L   P
Sbjct: 136 IADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAP 195

Query: 202 MFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGV-------THFCAAPVVLNAI 254
           ++H     +  S  AL GT + + +  A+     I  + V       T F    V +  +
Sbjct: 196 LYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMF----VRMLKL 251

Query: 255 ANASPED--TILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCA 311
               PE+      ++++     A AP P  +  AM    G  I   Y  +E  G   V  
Sbjct: 252 ----PEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGG---VTV 304

Query: 312 WKPE-WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVM 370
              E W + P  +  +  A  G   I  +            +P     IG +        
Sbjct: 305 ITSEDWLAHP-GSVGK--AVLGEVRILDE--------DGNELPP--GEIGTVYFEMDGYP 351

Query: 371 KGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
             Y  +P+    A   +GW   GD+     D Y+ + DR  D+IISGG NI   E+E +L
Sbjct: 352 FEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLL 411

Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
             HP V + AV   PDE  GE   A V     AD  D   LA ++  + R ++  Y  P+
Sbjct: 412 VTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGD--ALAAELIAWLRGRLAHYKCPR 469

Query: 490 SVVF-AALPKSATGKIQKHLLRAK 512
           S+ F   LP++ TGK+ K  LR +
Sbjct: 470 SIDFEDELPRTPTGKLYKRRLRDR 493

Length = 502

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score =  147 bits (375), Expect = 3e-39
 Identities = 106/374 (28%), Positives = 150/374 (40%), Gaps = 61/374 (16%)

Query: 159 YTSGTTASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLA 215
           YTSG+T  PKGV+V HRG    L  L      G+  G   L      F  + W     L 
Sbjct: 100 YTSGSTGRPKGVMVEHRGLVNLLAWLQERY--GLTAGDRVLQFASFSFDASVWEIFPPL- 156

Query: 216 ALCGTSICL----RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 271
            L G ++ L         +A+   +  H +T     P +L A+ +A     +  L  V+ 
Sbjct: 157 -LSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDALEPAALPSLRLVI- 214

Query: 272 VNTAGAPPPPSLL--FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFET----QA 325
               G   P  L+  +     G R+ + YG TE T    V   + + D L   +    + 
Sbjct: 215 --VGGEALPAELVRRWRELFPGARLVNAYGPTETTV--DVTYHEVDPDDLDGGSVPIGRP 270

Query: 326 RLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
             N R          + V+D    +PVP  G   GE+ + G+ V +GYL  P+   E F 
Sbjct: 271 IANTR----------VYVLDED-LRPVP-VG-VPGELYIGGAGVARGYLNRPELTAERFV 317

Query: 386 NGWFH--------SGDLAVKHPDNYIEIKDRLKD-VIISG-----GENISSVEVEKVLYL 431
              F         +GDLA   PD  +E   R  D V I G     GE      +E  L  
Sbjct: 318 PDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVKIRGYRIELGE------IEAALLA 371

Query: 432 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV 491
           HP V EA VVAR D    +   A+V     A+       A ++  F   ++P Y VP + 
Sbjct: 372 HPGVREAVVVAREDGAGEKRLVAYVVPAAGAEL-----DAAELRAFLAERLPDYMVPSAF 426

Query: 492 VF-AALPKSATGKI 504
           V   ALP +  GK+
Sbjct: 427 VVLDALPLTPNGKV 440

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score =  148 bits (375), Expect = 5e-39
 Identities = 137/500 (27%), Positives = 198/500 (39%), Gaps = 72/500 (14%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
           P   V+V+APN      A       GAV   +N RL    +A ++        ++     
Sbjct: 52  PQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVI----- 106

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
                        +        +   G            LA G +      E+  P    
Sbjct: 107 -------------AVDAQVMDAIFQSGSGVR-------VLALGDLVGLGEPESAGPPIED 146

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMF 203
            P E E Q   + YTSGTT  PKG V+  R A    L  +   G+  G   V L  +P++
Sbjct: 147 PPREPE-QPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLY 205

Query: 204 HGNGWSYTWSLA-ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT 262
           H  G+      A AL GT + + +         I    VT   A P  L+A+A A+ E  
Sbjct: 206 HVIGFFAVLVAALALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDALAAAA-EGA 264

Query: 263 ILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPF 321
            L L ++ +V  AGA  P ++L  ++Q       + YG TE              +SL +
Sbjct: 265 PLKLDSLEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTEAM------------NSL-Y 311

Query: 322 ETQARLNAR------QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 375
               R            VR + + G       +      +G+    +V        GYL 
Sbjct: 312 MRDPRTGTEMRPGFFSEVRIVRIGG-------SPDEALPNGEEGELVVAAADATFTGYLN 364

Query: 376 NPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLV 435
            P+A  E   +GW+ + D+AV  P   + I  R+ D+IISGGENI   EVE+VL   P V
Sbjct: 365 QPQATAEKLQDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGV 424

Query: 436 LEAAVVARPDERWGESPCAFVTLKP----EADELDKGKLAEDVSKFCRA-KMPSYWVPKS 490
            E  V+  PDERWG+S  A V  +      AD LD          FCRA ++  +  P+ 
Sbjct: 425 TEVVVIGLPDERWGQSVTACVVPREGETLSADALD---------TFCRASELADFKRPRR 475

Query: 491 VVFA-ALPKSATGKIQKHLL 509
             F   LPK+A  K+ +  L
Sbjct: 476 YFFLDELPKNAMNKVLRRQL 495

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score =  148 bits (377), Expect = 5e-39
 Identities = 137/517 (26%), Positives = 207/517 (40%), Gaps = 87/517 (16%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
           P D V + A N     EA  GA  A AV  ++N R     + ++L  + +  ++ ++EF 
Sbjct: 52  PGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFA 111

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE--F 143
               E L  +      KL+   L+V+ D S +       L  GA++YE  L  G PE  F
Sbjct: 112 PRVAEVLPRLP-----KLR--TLVVVEDGSGN------DLLPGAVDYEDALAAGSPERDF 158

Query: 144 AWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---------WGM---- 190
             + P+D    + L YT GTT  PKGV+      + + L G              +    
Sbjct: 159 GERSPDD----LYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRA 214

Query: 191 --NEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVT---AKAVYTAIATHGVTHFC 245
               G       P+ HG G    ++ A   G ++ L       A  V+  I    V    
Sbjct: 215 AAGPGMRRFPAPPLMHGAGQWAAFA-ALFSGQTVVLLPDVRFDADEVWRTIEREKVNVIT 273

Query: 246 ------AAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFR------ 293
                 A P+ L+A+    P D    L+++  + + GA   PS+     ++         
Sbjct: 274 IVGDAMARPL-LDALEARGPYD----LSSLFAIASGGALFSPSV-----KEALLELLPNV 323

Query: 294 -ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLD-GLDVIDARTNQP 351
            +T + G +E TG                 T A+     G     +     V+D   N P
Sbjct: 324 VLTDSIGSSE-TGFGG------------SGTVAKGAVHTGGPRFTIGPRTVVLDEDGN-P 369

Query: 352 VPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF--ANG--WFHSGDLAVKHPDNYIEIKD 407
           V      IG I  RG  +  GY K+P+   E F   +G  +   GD A    D  I +  
Sbjct: 370 VEPGSGEIGWIARRGH-IPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLG 428

Query: 408 RLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDK 467
           R    I +GGE +   EVE+ L  HP V +A VV  PDERWG+   A V L+  A   D 
Sbjct: 429 RGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGAR-PD- 486

Query: 468 GKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGK 503
                ++   CR+ +  Y VP+++ F   + +S  GK
Sbjct: 487 ---LAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGK 520

Length = 533

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  144 bits (365), Expect = 8e-38
 Identities = 95/329 (28%), Positives = 137/329 (41%), Gaps = 65/329 (19%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 218
           YTSGTT +PKGV+++HR     +     +  ++ G   L  LP+ H              
Sbjct: 95  YTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAH--------VFEQRL 146

Query: 219 GTSICLRQ-------VTAKAVYTAIATHGVTHFCAAPVVLNAIAN--------ASPE--- 260
           G  + L          + + +   +     T F A P V   I          A P    
Sbjct: 147 GEYLPLSSGARVNFAESPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRK 206

Query: 261 --DTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDS 318
                L    +    + GAP PP +L      G  I   YGLTE +G A+V   +P    
Sbjct: 207 LFRWALGGGRLRFAVSGGAPLPPEVLEFFRALGIPILEGYGLTETSGVATV--NRPG--- 261

Query: 319 LPFETQARLNARQGVRTI--CLDGLDV-IDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 375
                         + T+   L G++V I               GEI++RG  VMKGY K
Sbjct: 262 -----------DIRIGTVGKPLPGVEVRIAED------------GEILVRGPNVMKGYYK 298

Query: 376 NPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVEVEKVLYLHP 433
           NP+A  EA   +GW H+GD+     D ++ I DR KD+I+ +GG+NI+   +E  L   P
Sbjct: 299 NPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASP 358

Query: 434 LVLEAAVVARPDERWGESPCAFVTLKPEA 462
            + +A VV   D+R      A + L PEA
Sbjct: 359 YISQAVVVG--DDR--PYLTALIVLDPEA 383

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  143 bits (362), Expect = 5e-37
 Identities = 132/432 (30%), Positives = 202/432 (46%), Gaps = 52/432 (12%)

Query: 101 GKLKTPHL--IVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQS--IA 156
           GK+K   L  IV+G+E  +          GA+ +++ LE  D        E+  Q+   A
Sbjct: 139 GKVKGLGLPVIVLGEEKIE----------GAVNWKELLEAADRAGDTSDNEEILQTDLCA 188

Query: 157 LGYTSGTTASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSL 214
           L ++SGTT   KGV+++HR   A L S   ++   M    V L  +P FH       + +
Sbjct: 189 LPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFH------IYGI 242

Query: 215 AALC-------GTSICLRQVTAKAVYTAIATHGVTHF-CAAPVVLNAIANASPEDTILPL 266
             +C       G  + + +   +    A+ T  V+      P++LN + N   E+  L  
Sbjct: 243 TGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSK 302

Query: 267 TNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQ 324
             +  + TA AP  P LL A   K  G ++   YGLTE +     C      D       
Sbjct: 303 LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHS-----CITLTHGDPEKGHGI 357

Query: 325 ARLNARQGVRTICLDGLDV--IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 382
           A+ N+   +    L  L+V  ID  T + +P +  T GE+ +R  CVM+GY  N +  + 
Sbjct: 358 AKKNSVGFI----LPNLEVKFIDPDTGRSLPKN--TPGELCVRSQCVMQGYYNNKEETDR 411

Query: 383 AF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 441
               +GW H+GD+     D  I I DR+K++I   G  ++  E+E +L  HP V +AAVV
Sbjct: 412 TIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV 471

Query: 442 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSA 500
             PDE  GE P A V + P+A E +     ED+  F  A +  Y   + V F  ++PKS 
Sbjct: 472 PLPDEEAGEIPAACVVINPKAKESE-----EDILNFVAANVAHYKKVRVVQFVDSIPKSL 526

Query: 501 TGKIQKHLLRAK 512
           +GKI + LL+ K
Sbjct: 527 SGKIMRRLLKEK 538

Length = 546

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score =  139 bits (353), Expect = 5e-36
 Identities = 128/482 (26%), Positives = 193/482 (40%), Gaps = 64/482 (13%)

Query: 45  FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 104
            GA  AG V  ++N  L A   A++L  + + VV V  E   + + AL        GK  
Sbjct: 73  LGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAAL--------GKSP 124

Query: 105 T-PHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP--PEDE--WQSIALGY 159
              H +V+G       QL            + L T   +F       +D   W      Y
Sbjct: 125 HLEHRVVVGRPEAGEVQLA-----------ELLATESEQFKPAATQADDPAFWL-----Y 168

Query: 160 TSGTTASPKGVVVSHRGAYLMS-LNGALIWGMNEGAVFLWTLPMFH----GNGWSYTWSL 214
           +SG+T  PKGVV +H   Y  + L      G+ E  V      +F     GN  ++  S+
Sbjct: 169 SSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSV 228

Query: 215 AALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA--SPEDTILPLTNVVN 271
            A   T++ +  + T  AV+  +  H  T F   P +  A+      P +  + L     
Sbjct: 229 GA---TTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCT- 284

Query: 272 VNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQ 331
             +AG   P  +       G R    +G+  + G  S      E   + F +    + R 
Sbjct: 285 --SAGEALPAEV-------GQRWQARFGVDIVDGIGST-----EMLHI-FLSNLPGDVRY 329

Query: 332 GVRTICLDG--LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF 389
           G     + G  L ++     Q V A     GE+++ G      Y  N     + F   W 
Sbjct: 330 GTSGKPVPGYRLRLVGDG-GQDVAAG--EPGELLISGPSSATMYWNNRAKTRDTFQGEWT 386

Query: 390 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 449
            SGD  V++ D       R  D++   G  +S  E+E  L  HP VLEAAVV   DE   
Sbjct: 387 RSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGL 446

Query: 450 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHL 508
             P AF+ L+P  D      L  ++ +  + ++  Y  P+ +VF   LPK+ATGKIQ+  
Sbjct: 447 IKPKAFIVLRPGQDI--DTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFK 504

Query: 509 LR 510
           LR
Sbjct: 505 LR 506

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score =  140 bits (354), Expect = 6e-36
 Identities = 126/505 (24%), Positives = 216/505 (42%), Gaps = 72/505 (14%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           D V++   N P      FG    GA++  IN RL     A+IL ++ +++++   +F+ +
Sbjct: 63  DKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPM 122

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
             +    ++      L+  H+ +           +     G   + +          + P
Sbjct: 123 YRQ----IQQEDATPLR--HICLTRV---ALPADD-----GVSSFTQLKAQQPATLCYAP 168

Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHR----GAYLMSLNGALIWGMNEGAVFLWTLPMF 203
           P     +  + +TSGTT+ PKGVV++H       Y  +   AL     +  V+L  +P F
Sbjct: 169 PLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCAL----RDDDVYLTVMPAF 224

Query: 204 HGNGWSYTWSLAALC--GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAI--ANASP 259
           H +    T ++AA     T + L + +A+A +  +  +  T     P+++  +     S 
Sbjct: 225 HID-CQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSA 283

Query: 260 EDTILPLTNV---VNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTE-LTG-----PASVC 310
            D    L  V   +N++           F   + G R+  +YG+TE + G     P    
Sbjct: 284 NDRQHCLREVMFYLNLSDQ-----EKDAF-EERFGVRLLTSYGMTETIVGIIGDRPGD-- 335

Query: 311 AWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG---S 367
             K  W S+          R G    C +  ++ D   N+P+PA    IGEI ++G    
Sbjct: 336 --KRRWPSI---------GRPG---FCYEA-EIRDD-HNRPLPAG--EIGEICIKGVPGK 377

Query: 368 CVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVE 426
            + K Y  +PKA  +   A+GW H+GD      + +    DR  ++I  GGEN+S VE+E
Sbjct: 378 TIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELE 437

Query: 427 KVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYW 486
            ++  HP + +  VV   D    E+  AFV L  E + L +    E+   FC   M  + 
Sbjct: 438 NIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLN-EGETLSE----EEFFAFCEQNMAKFK 492

Query: 487 VPKSVVF-AALPKSATGKIQKHLLR 510
           VP  +     LP++ +GKI K  L+
Sbjct: 493 VPSYLEIRKDLPRNCSGKIIKKNLK 517

Length = 517

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score =  138 bits (350), Expect = 8e-36
 Identities = 93/383 (24%), Positives = 146/383 (38%), Gaps = 57/383 (14%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 218
           YTSGTT  PK  ++SHR           +  +    V    LP++H N  +  WS A   
Sbjct: 88  YTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNALTVGWSSALAA 147

Query: 219 GTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA--SPEDTILPLTNVVNVNTA 275
           G S+ L R+ +A   +  +  +G T F     +   + N    P+D   PL  ++     
Sbjct: 148 GASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEKPDDRDHPLRKIIGNGLR 207

Query: 276 GAPPPPSLLFAMSQKGFRITHT---YGLTELTGPASVCA--WKPEWDSLPFETQARLNAR 330
                P +     ++ F +      YG TE                         RL   
Sbjct: 208 -----PDIWDEFKER-FGVPRIVEFYGSTE-----GNVGFINLFNKP----GAVGRLP-- 250

Query: 331 QGVRTICLDGLDVI--DARTNQPV-PADGK-------TIGEIVMRGSCVMK--GYLKNPK 378
                     + V+  D  T +P+  A+G         +G ++   +      GY  +  
Sbjct: 251 -------PAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEA 303

Query: 379 ANEEAFAN------GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 432
             ++   +       +F++GDL  +    Y    DRL D     GEN+S+ EVE+VL  H
Sbjct: 304 TEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKH 363

Query: 433 PLVLEAAVVARPDERW-GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV 491
           P V EA V         G +  A +TL P A   D    A  + +    ++P+Y  P  +
Sbjct: 364 PGVEEANVYGVEVPGTEGRAGMAALTLAPGAA-FDPQAFAAHLDE----QLPAYARPLFL 418

Query: 492 -VFAALPKSATGKIQKHLLRAKA 513
            V AA+  + T K QK  LR + 
Sbjct: 419 RVQAAMETTGTFKYQKTDLRKEG 441

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  139 bits (352), Expect = 1e-35
 Identities = 139/507 (27%), Positives = 207/507 (40%), Gaps = 65/507 (12%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
           P D V+++  N  A +EA + A   GA    +N       +A+IL  + + V+I   +  
Sbjct: 35  PGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIAHADLL 94

Query: 86  SLAEEAL----KMMEANSEGKLKTPHLIV----IGDESCDSKQLEYALARGAIEYEKFLE 137
                AL     ++         TP  I     I                GAI++E +L 
Sbjct: 95  HGLASALPAGVTVLSV------PTPPEIAAAYRISPALLTPPA-------GAIDWEGWLA 141

Query: 138 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGV-----VVSHRGAYLMSLNGALIWGMNE 192
             +P   +  P    Q  ++ YTSGTT  PKGV           A       ALI+G+  
Sbjct: 142 QQEP---YDGPPVP-QPQSMIYTSGTTGHPKGVRRAAPTPEQAAAA--EQMRALIYGLKP 195

Query: 193 GAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLN 252
           G   L T P++H    +Y      L G  +   +   + +   I  H +TH    P +  
Sbjct: 196 GIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFI 255

Query: 253 AIANASPE-----DTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGP 306
            +     E     D    ++++ +V  A AP P  +  AM +  G  I   YG TE +G 
Sbjct: 256 RLLKLPEEVRAKYD----VSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTE-SGA 310

Query: 307 ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 366
            +      +  S P  T  +  A  G        L  +D    +P+P     IGEI  R 
Sbjct: 311 VTFAT-SEDALSHP-GTVGK--AAPGAE------LRFVDE-DGRPLPQG--EIGEIYSR- 356

Query: 367 SCVMKG--YLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVE 424
                   Y   P+   E    G+  SGD+     D Y+ + DR +D++ISGG NI   E
Sbjct: 357 IAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAE 416

Query: 425 VEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPS 484
           +E VL+  P V + AV   PD  +GE+  A V  +P A  LD      D+    +A++  
Sbjct: 417 IEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGA-TLD----EADIRAQLKARLAG 471

Query: 485 YWVPKSVVFAA-LPKSATGKIQKHLLR 510
           Y VPK +   A LP+  +GKI K  LR
Sbjct: 472 YKVPKHIEIMAELPREDSGKIFKRRLR 498

Length = 509

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  137 bits (348), Expect = 1e-35
 Identities = 120/412 (29%), Positives = 170/412 (41%), Gaps = 55/412 (13%)

Query: 124 ALARGAIEYE------KFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGA 177
           A    AIEY       K + T +     K  +D     A  YTSGTT  PKGV V     
Sbjct: 58  AFGPKAIEYRLGHSGAKVVVT-NAANRGKLDDD---LFAQMYTSGTTGLPKGVPVPLN-- 111

Query: 178 YLMSLNGALIWG--MNEGAVFLWTL--PMFHGNGWSYTWSLAA----LCGTSICLRQV-- 227
            L +    + +   + +  VF W +  P     GW+Y    A       G +    +   
Sbjct: 112 ALAAFYAYMRYAIDLRDDDVF-WNIADP-----GWAYGLYYAITGPLAMGITTVFLEGGF 165

Query: 228 TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNV-NTAGAPPPPSLL-F 285
           TA+  Y  +   GVT+F  +P     +  A+  D    +   + V ++AG P  P ++ +
Sbjct: 166 TAENTYDVLERLGVTNFAGSPTAYRMLM-AAGADAAARIKLKLRVASSAGEPLNPEVVRW 224

Query: 286 AMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLD--V 343
             +  G  I   YG TE   P  V                    R G   + L G    V
Sbjct: 225 FQANLGVTIHDHYGQTETGMP--VGN----------HHALAHEVRAGSMGLPLPGYRIAV 272

Query: 344 IDARTNQPVPADGKTIGEIVMRGS----CVMKGYLKNPKANEEAFANGWFHSGDLAVKHP 399
           +D       P      G++ +  +        GY  +P+   E  A  W+ +GDL  +  
Sbjct: 273 LDDDGQ---PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTGDLVERDE 329

Query: 400 DNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLK 459
           D Y     R  DVIIS G  I   +VE  L  HP V EAAVV  PD   GE   AFV LK
Sbjct: 330 DGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVLK 389

Query: 460 PEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLR 510
                 D  +LAE++  F + ++ ++  P+ V F  ALPK+ +GKIQ+ LLR
Sbjct: 390 EGYAGSD--ELAEELQLFVKKRLSAHAYPREVEFVPALPKTPSGKIQRFLLR 439

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  138 bits (351), Expect = 2e-35
 Identities = 122/395 (30%), Positives = 186/395 (47%), Gaps = 69/395 (17%)

Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG------MNEGAVFLWTLP 201
           P+D    +AL Y+SGTT  PKGV+++H+G  L++     + G       +   V L  LP
Sbjct: 178 PDD---VVALPYSSGTTGLPKGVMLTHKG--LVTSVAQQVDGENPNLYFHSDDVILCVLP 232

Query: 202 MFHGNGWSYTWSLAALCG-----TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN 256
           MFH     Y+ +   LCG       + + +    A+   I  H VT     P ++ AIA 
Sbjct: 233 MFH----IYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAK 288

Query: 257 ASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPA-SVC-AW 312
            SP      L+++  V +  AP    L  A   K     +   YG+TE  GP  ++C A+
Sbjct: 289 -SPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE-AGPVLAMCLAF 346

Query: 313 KPEWDSLPFETQA-------RLNARQGVRTICLDGLDVIDART------NQPVPADGKTI 359
             E    PF  ++       R NA           L ++D  T      NQP        
Sbjct: 347 AKE----PFPVKSGSCGTVVR-NAE----------LKIVDPETGASLPRNQP-------- 383

Query: 360 GEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGE 418
           GEI +RG  +MKGYL +P+A       +GW H+GD+     D+ + I DRLK++I   G 
Sbjct: 384 GEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGF 443

Query: 419 NISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFC 478
            ++  E+E +L  HP + +AAVV   DE  GE P AFV ++    E+ +    +++ +F 
Sbjct: 444 QVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFV-VRSNGSEITE----DEIKQFV 498

Query: 479 RAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAK 512
             ++  Y     V F  ++PK+ +GKI +  LRAK
Sbjct: 499 AKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAK 533

Length = 537

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score =  136 bits (344), Expect = 4e-35
 Identities = 109/405 (26%), Positives = 172/405 (42%), Gaps = 41/405 (10%)

Query: 120 QLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYL 179
           +LE   A+  I   +  E  DPE              L +TSGTT  PKGV+  HR    
Sbjct: 67  RLELGEAKVLITTPELYERTDPE----------DPALLHFTSGTTGKPKGVLHVHRAVVA 116

Query: 180 MSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR--QVTAKAVYTAIA 237
                  +  +    V+  T       G SY      L G ++ +   +  A+  Y  + 
Sbjct: 117 HYATARYVLDLRPDDVYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFDAERWYGILE 176

Query: 238 THGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTAGAPPPPSLL-FAMSQKGFRIT 295
              VT +  AP  L  +  A PE      L+++ ++ + G P  P ++ +     G  I 
Sbjct: 177 EEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHIASVGEPLNPEVVVWGEKVLGMPIH 236

Query: 296 HTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTN----QP 351
            T+  TE TG   +  +              +  + G     L G++      +     P
Sbjct: 237 DTWWQTE-TGAIMIANY------------PGIPVKPGSMGRPLPGIEAAVIERDGDGLTP 283

Query: 352 VPADGKTIGEIVMRGS--CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRL 409
           V   G+  GE+ ++     + +GYL N +    +F +GW+ +GDLA +  D Y     R 
Sbjct: 284 VTGPGQV-GELALKPGWPSMFRGYLGNEERYASSFVDGWYLTGDLAYRDEDGYFWFVGRA 342

Query: 410 KDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKP--EADELDK 467
            DVI + G  +   EVE  L  HP V EA V+ +PD   GE   AFV+L+P  E  E   
Sbjct: 343 DDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEPSE--- 399

Query: 468 GKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRA 511
            +L  ++  F R ++ +   P+ + F   LPK+ +GKI + LL+A
Sbjct: 400 -ELRRELLTFARQRLGAAVAPREIHFVDNLPKTRSGKIMRRLLKA 443

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  137 bits (347), Expect = 6e-35
 Identities = 143/513 (27%), Positives = 217/513 (42%), Gaps = 84/513 (16%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGA--VLNSINIRLNATVVAFILSHASSAVVIVD-- 81
           P D V V  PNV   Y   F     G   VL   + R  + + AF  S   +A++IV   
Sbjct: 77  PGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSHRA-SELGAFA-SQIEAALLIVARQ 134

Query: 82  QEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP 141
              F     A +++      K  T   +++  E+     LE AL   A         G  
Sbjct: 135 HSGFDYRPFARELV-----AKHPTLRHVIVAGEAEHPSVLEAALCHPA---------GLF 180

Query: 142 EFAWKPPEDEWQSIALGYTSG-TTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTL 200
             A      E   +A    SG TT +PK +  +H   Y      A I G ++  V+L  L
Sbjct: 181 TPAPPADAGE---VAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCAL 237

Query: 201 PMFHGNGWSYTWSLAAL-CGTSICLRQ-VTAKAVYTAIATHGVTHFCAAPVVLNAIANAS 258
           P  H    S   +L     G ++ L    + +  +  I  HGVT     P + +    A+
Sbjct: 238 PAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAA 297

Query: 259 PEDTILPLTNVVNVNTAGAPPPPSL--------------LFAMSQKGFRITHTYGL---T 301
             +    L+++  +   GA    +L              +F M++         GL   T
Sbjct: 298 EWERA-DLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAE---------GLVNYT 347

Query: 302 ELTGPASVCAWKPEWDSLPFETQARLNARQGVRTIC-LDGLDVIDARTNQPVPADGKTIG 360
            L  P  +             TQ R         +   D + V+DA  N PV   G+  G
Sbjct: 348 RLDDPPEII----------IHTQGR--------PLSPDDEVRVVDADGN-PVAP-GEV-G 386

Query: 361 EIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGEN 419
           E++ RG   ++GY + P+ N  AF A+G++ SGDL  + PD Y+ ++ R+KD I  GGE 
Sbjct: 387 ELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEK 446

Query: 420 ISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCR 479
           I++ EVE +L  HP V +AA+VA PDE  GE  CAF+ +K           A  + +F R
Sbjct: 447 IAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLR------AAQLRRFLR 500

Query: 480 AK-MPSYWVPKSVVF-AALPKSATGKIQKHLLR 510
            + + ++ +P  + F  +LP +A GKI K  LR
Sbjct: 501 ERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALR 533

Length = 542

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score =  136 bits (345), Expect = 6e-35
 Identities = 106/372 (28%), Positives = 159/372 (42%), Gaps = 54/372 (14%)

Query: 157 LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG-----MNEGAVFLWTLPMFHGNGWSYT 211
           +G+TSGTT  PKG +  HR      L     +           VF+ + P+      ++T
Sbjct: 152 IGFTSGTTGLPKGTMHFHRDI----LAICDAFPRHVLQPTPDDVFIGSPPL------AFT 201

Query: 212 WSLAALC-------GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 264
           + L  L         +++ L Q T   +  AI  H  T    AP    A+        I 
Sbjct: 202 FGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAYRAMLIKVKAFDIS 261

Query: 265 PLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFET 323
            L   V   +AG   P  +     ++ G +I    G TE+                 F +
Sbjct: 262 SLRKCV---SAGETLPAKVWQDWYERTGLKIIDGIGATEMLHI--------------FIS 304

Query: 324 QARLNARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 381
               NA+ G     + G +  ++D + N  VP      G + +RG    + YL +    +
Sbjct: 305 ANEENAKPGATGKPVPGYEARIVDDQGN-EVPRG--EAGRLAVRGPTGCR-YLDDE-RQQ 359

Query: 382 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 441
           E   +GW  +GD+  +  D Y     R  D+I+S G NI++ EVE  L  HP V E AV+
Sbjct: 360 EYVRDGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVI 419

Query: 442 ARPDERWGESPCAFVTLKP--EADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPK 498
             PDE  G+  CA + L+   +A EL    LAE +  F +A +  Y  P+ + F  ALPK
Sbjct: 420 GVPDEERGQIVCAHIVLRDGTKATEL----LAERLQDFVKAVIAPYKYPREINFVDALPK 475

Query: 499 SATGKIQKHLLR 510
           + TGKIQ+  LR
Sbjct: 476 TQTGKIQRFRLR 487

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  135 bits (342), Expect = 1e-34
 Identities = 128/388 (32%), Positives = 174/388 (44%), Gaps = 63/388 (16%)

Query: 147 PPEDEWQSIAL-GYTSGTTASPKGVVVSHRGAYLMSLNG-ALIWGMNEGAVFLWTLPMFH 204
            PE +  + AL  YTSGTT  PKGVV+S R A    L+  A  W      V +  LP+FH
Sbjct: 122 YPEPDPDAPALIVYTSGTTGPPKGVVLS-RRAIAADLDALAEAWQWTADDVLVHGLPLFH 180

Query: 205 GNGWSYTWSLAAL--CGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT 262
            +G      L  L      +   + T +A   A++  G  +F   P V + IA A PE  
Sbjct: 181 VHGLVLG-VLGPLRIGNRFVHTGRPTPEAYAQALSEGGTLYF-GVPTVWSRIA-ADPE-- 235

Query: 263 ILPLTNVVNVNTAGAPPPPSLLFAMSQ-------------KGFRITHTYGLTELTGPASV 309
                       A A     LL + S               G R    YG+TE     S 
Sbjct: 236 -----------AARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLST 284

Query: 310 CA---WKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 366
            A    +P W  LP           GV T  +D           PVP DG+T+GE+ +RG
Sbjct: 285 RADGERRPGWVGLPL---------AGVETRLVDE-------DGGPVPHDGETVGELQVRG 328

Query: 367 SCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLK-DVIISGGENISSVE 424
             +  GYL  P A   AF A+GWF +GD+AV  PD    I  R   D+I SGG  I + E
Sbjct: 329 PTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGE 388

Query: 425 VEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPS 484
           +E  L  HP V EAAVV  PD+  G+   A+V     AD++   +L + V++    ++  
Sbjct: 389 IETALLGHPGVREAAVVGVPDDDLGQRIVAYVV---GADDVAADELIDFVAQ----QLSV 441

Query: 485 YWVPKSVVFA-ALPKSATGKIQKHLLRA 511
           +  P+ V F  ALP++A GK+ K  L +
Sbjct: 442 HKRPREVRFVDALPRNAMGKVLKKQLLS 469

Length = 471

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  134 bits (339), Expect = 2e-34
 Identities = 106/384 (27%), Positives = 152/384 (39%), Gaps = 49/384 (12%)

Query: 149 EDEWQSIALGY-TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGN- 206
           E       L Y TSGTT  PK V+ +H    +  L+     G+  G +        H N 
Sbjct: 80  ETRADDPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQPGDI--------HLNI 131

Query: 207 ---GWS-YTWS------LAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN 256
              GW+ + WS       A      I   +  A+    A+   GVT FCA P V      
Sbjct: 132 SSPGWAKHAWSSFFAPWNAGATVFGINYPRFDARRYLGALEKFGVTTFCAPPTVWRMFIQ 191

Query: 257 ASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPE 315
                  + L   V   +AG P  P ++  + +  G  I   YG TE T           
Sbjct: 192 QDLAQYDVRLREAV---SAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMIG----NSP 244

Query: 316 WDSLPFETQARLNARQGVRTICLDGLDV-IDARTNQPVPADGKTIGEIVM----RGSCVM 370
              +   +  R           L G  V +     + +P    T GEI +    R   +M
Sbjct: 245 GQKVKPGSMGR----------PLPGYRVVLLDDEGKEIPV---TEGEIALDLGDRPIGLM 291

Query: 371 KGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLY 430
            GY+ +P+    AF  G++ +GD A +  D Y+    R  DV  S    IS  EVE  L 
Sbjct: 292 LGYMGDPEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESALL 351

Query: 431 LHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKS 490
            HP V EAAVV  PD      P A++ LKP  +     +LA ++    R ++  Y   + 
Sbjct: 352 EHPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEP--SRELALELFAHVRERLAPYKRIRR 409

Query: 491 VVFAA-LPKSATGKIQKHLLRAKA 513
           + F   LPK+ +GKI++  LR   
Sbjct: 410 IEFVGELPKTISGKIRRVELRKIE 433

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score =  134 bits (340), Expect = 5e-34
 Identities = 127/524 (24%), Positives = 200/524 (38%), Gaps = 63/524 (12%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D+V++ A N     E       AG ++  +N R +          A SA+++V     
Sbjct: 56  NGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWS-------FEEAKSAMLLVRPVML 108

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA-LARGAIEYEKFLETGDPEFA 144
              E      E     +L +    V  +    S  +         +  ++ L T + ++A
Sbjct: 109 VTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYA 168

Query: 145 WKPPEDEWQSIAL-GYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMF 203
           W P         L  +TSGTT  PKGV +SH    + SL    I G  E  V+L T P+ 
Sbjct: 169 WAP-----DDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLC 223

Query: 204 HGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI 263
           H  G S   ++  +    + L +  AKA   AI  H VT     P ++  + + + +   
Sbjct: 224 HIGGLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMT 283

Query: 264 LPLTNVVNVNTAGAPPPPSLLFAMSQKGF---RITHTYGLTELTGPASVCAWKPEWDSLP 320
             +   V     G     S L   ++K F   ++   YG+TE       C+      SL 
Sbjct: 284 WKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTE------ACS------SLT 331

Query: 321 FETQARLN--ARQGVRTICLDGLDVIDARTNQPV------PA----------DGKTIGEI 362
           F T   L+    +  +           +  +QP       PA          +   +G I
Sbjct: 332 FMT---LHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRI 388

Query: 363 VMRGSCVMKGYLKNPKAN-EEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENIS 421
           + RG  VM GY             +GW  +GD+        + +  R  D I +GGEN+ 
Sbjct: 389 LTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVY 448

Query: 422 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLK-----PEADELDKGK----LAE 472
             EVE VL  HP V    VV  PD R  E   A V L+      + ++ +  K     +E
Sbjct: 449 PEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSE 508

Query: 473 DVSKFCRAK-MPSYWVPKSVVF--AALPKSATGKIQKHLLRAKA 513
            +   CR K +  + +PK  V      P + TGKI++  +R + 
Sbjct: 509 TLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREV 552

Length = 563

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score =  134 bits (338), Expect = 8e-34
 Identities = 130/512 (25%), Positives = 197/512 (38%), Gaps = 72/512 (14%)

Query: 20  LLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSIN-IRLNATVVAFILSHASSAVV 78
            L P+ P   V V+  N P        A ++G V   +N  R  A +   I  HA   +V
Sbjct: 48  RLDPTRPPH-VGVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIA-HADCQLV 105

Query: 79  IVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALA--RGAIEYEKFL 136
           + +     L +                  + V      DS      LA  R A       
Sbjct: 106 LTESAHAELLDGLDP----------GVRVINV------DSPAWADELAAHRDA------- 142

Query: 137 ETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVF 196
              +P F    P+D +  I   +TSGT+  PK V  +HR      +  A  +G+    V 
Sbjct: 143 ---EPPFRVADPDDLFMLI---FTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVC 196

Query: 197 LWTLPMFHGNGWSYTWSLAALCGTSICLRQ-VTAKAVYTAIATHGVTHF--CAAPVVLNA 253
             ++P+FH N     W++A   G SI LR+  +A      +  +G T+      P+    
Sbjct: 197 YVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVL 256

Query: 254 IANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWK 313
                P+D   PL  +V  N     P     FA  + G  +   +G TE  G  ++    
Sbjct: 257 ATPERPDDADNPL-RIVYGNEGA--PGDIARFA-RRFGCVVVDGFGSTE--GGVAI-TRT 309

Query: 314 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVP-----ADGKT-----IGEIV 363
           P             +   G       G+ ++D  T    P               IGE+V
Sbjct: 310 P-------------DTPPGALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELV 356

Query: 364 -MRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISS 422
              G    +GY  +P+A+ E    G + SGDLA +  D Y     RL D +   GEN+ +
Sbjct: 357 NTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGT 416

Query: 423 VEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKM 482
             +E++L  +P   E AV A PD   G+   A + L P A + D    AE ++   +  +
Sbjct: 417 APIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGA-KFDPDAFAEFLAA--QPDL 473

Query: 483 PSYWVPKSV-VFAALPKSATGKIQKHLLRAKA 513
                P  V V A LP++AT K+ K  L A+ 
Sbjct: 474 GPKQWPSYVRVCAELPRTATFKVLKRQLSAEG 505

Length = 529

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  133 bits (336), Expect = 3e-33
 Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 7/173 (4%)

Query: 343 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNY 402
           + D  T + +P   +  GEIV+R   ++KGY   P+A  EA  +GW H+GD+       +
Sbjct: 400 ICDFETGELLPLGAE--GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGF 457

Query: 403 IEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEA 462
           +    R K+++   G ++   EVE +L  HP VL +AVV RPD   G+ P AFV LKP A
Sbjct: 458 LHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGA 517

Query: 463 DELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRAKAKE 515
           D       A  +  +CR  M  Y VP+  +  ALP +ATGK++K  L+A A+E
Sbjct: 518 DL-----TAAALQAWCRENMAVYKVPEIRIVDALPMTATGKVRKQDLQALAEE 565

Length = 567

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  133 bits (336), Expect = 3e-33
 Identities = 120/477 (25%), Positives = 183/477 (38%), Gaps = 104/477 (21%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           D V++ A N P    A       GAV   I        +A+IL+ + S V+ V+      
Sbjct: 71  DRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVE------ 124

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDE-----SCDSKQLEYALARGAIEYEKFLETGDPE 142
            +E L ++    E   K   LIVI D         +  LE     G   +       +  
Sbjct: 125 NQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGR 184

Query: 143 FAWKPPEDEWQSIA-LGYTSGTTASPKGVVVSHR--GAYLMSLNGALIWGMNEGAVFLWT 199
            A   P+D    +A + YTSGTT +PKGV+++HR   A +  ++  L   +  G   L  
Sbjct: 185 IAPPKPDD----LATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPP-IGPGDRVLSF 239

Query: 200 LPMFH--GNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAP--------V 249
           LP+ H     +    +L    G ++  ++   + +   +     T     P         
Sbjct: 240 LPLAHIFERAFEGGLALYG--GVTVLFKEDP-RTLLEDLKEVRPTVMIGVPRVWEKVYKG 296

Query: 250 VLNAIANASPEDTIL--------------------PLTNVVNVN---------------- 273
           ++  +A A      L                    PL+ ++  +                
Sbjct: 297 IMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIR 356

Query: 274 ---TAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNAR 330
              + GAP  P LL      G  I   YGLTE +   SV    P+              R
Sbjct: 357 YALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSV--NPPD--------------R 400

Query: 331 QGVRTICLDGLDVIDARTNQPVP-ADGKTI--GEIVMRGSCVMKGYLKNPKANEEAF-AN 386
             + T+             +P+P  + K    GEI++RG  VMKGY KNP+A  EAF  +
Sbjct: 401 FVLGTV------------GKPLPGIEVKIADDGEILVRGPNVMKGYYKNPEATAEAFTED 448

Query: 387 GWFHSGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVEVEKVLYLHPLVLEAAVVA 442
           GWF +GDL     D Y+ I  R K++I  S G+NI+   +E  L   PL+ +  VV 
Sbjct: 449 GWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG 505

Length = 613

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score =  131 bits (331), Expect = 1e-32
 Identities = 134/534 (25%), Positives = 216/534 (40%), Gaps = 117/534 (21%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVL---------NSINIRLNATVVAFILSHASSAVV 78
           D V +  P +P +Y A  GA   GA++          ++  RL            S A V
Sbjct: 99  DRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLED----------SEAKV 148

Query: 79  IVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLET 138
           ++           L+   A+    LK  H++++G++             G +++   +E 
Sbjct: 149 LIT------TPALLERKPADDLPSLK--HVLLVGEDV--------EEGPGTLDFNALMEQ 192

Query: 139 GDPEFA--WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVF 196
              EF   W   ED      L YTSG+T  PKGV+  H         G  +  ++E  V+
Sbjct: 193 ASDEFDIEWTDRED---GAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVY 249

Query: 197 LWTL-PMFHGNGW----SY----TWSLAALCGTSICLRQV--TAKAVYTAIATHGVTHFC 245
             T  P     GW    SY     W    L G +  +     + +  Y  +  + VT + 
Sbjct: 250 WCTADP-----GWVTGTSYGIFAPW----LNGATNVIDGGRFSPERWYRILEDYKVTVWY 300

Query: 246 AAPVVLNAIANASPE-----DTILPLTNVVNVNTAGAP-PPPSLLFAMSQKGFRITHTYG 299
            AP  +  +  A  +     D    L+++ ++ + G P  P  + + M   G  I   + 
Sbjct: 301 TAPTAIRMLMGAGDDLVKKYD----LSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWW 356

Query: 300 LTELTGPASVCAW-----------KPEWDSLPFETQARLNARQGVRTICLDGLDVIDART 348
           +TE TG   +  +           KP    LP           G+    +D         
Sbjct: 357 MTE-TGGIMIANYPAMDIKPGSMGKP----LP-----------GIEAAIVD-------DQ 393

Query: 349 NQPVPADGKTIGEIVMRGS--CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIK 406
              +P +   +G + ++     +M+G   NP+  E  FA  W+ SGD A    D Y   +
Sbjct: 394 GNELPPN--RMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQ 451

Query: 407 DRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKP--EADE 464
            R+ DVI + GE +   EVE  L  HP V EA V+ +PD   GE   AFV L+P  E  E
Sbjct: 452 GRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSE 511

Query: 465 LDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 517
               +L E++  F +  + ++  P+ + F   LPK+ +GKI + +L  KA E+G
Sbjct: 512 ----ELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVL--KAWELG 559

Length = 570

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  130 bits (329), Expect = 1e-32
 Identities = 137/493 (27%), Positives = 211/493 (42%), Gaps = 67/493 (13%)

Query: 45  FGAPMAGAVLNSINIRLNATVVAFILSHA---SSAVVIVDQEFFSLAEEALKMMEA---- 97
           FGA  AGA +    + L+       LSH    S A +++  +  +L   ALK +E     
Sbjct: 89  FGALKAGARV----VHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLD 144

Query: 98  -------NSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPED 150
                  ++ GK+ TP   +  D                + Y  F++       W  P  
Sbjct: 145 RLIVCEDDNWGKVGTPQAPIPADPR-------------IVTYADFVKGAAAPAEW--PAV 189

Query: 151 EWQSIA-LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGM----NEGAV--FLWTLPMF 203
               +A L YT GTT  PKG +++H G    +++   +WG       G V   +  LP+F
Sbjct: 190 TPDDVALLQYTGGTTGLPKGAMLTH-GNLTSAVSIYDVWGKPSRATRGDVERVICVLPLF 248

Query: 204 HGNGWSYTWSLAALCGTSICLRQ-VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT 262
           H    +     +   G  I L Q     AV+  I     T F   P +  A+AN  P   
Sbjct: 249 HIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALAN-DPSLE 307

Query: 263 ILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPF 321
              L+++  + + GAP P  +     +K G ++   +G+TE   P +     PE    P 
Sbjct: 308 KRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGT--GHPPEGPDKP- 364

Query: 322 ETQARLNARQGVRTICLDG--LDVIDAR-TNQPVPADGKTIGEIVMRGSCVMKGYLKNPK 378
                     G   + L G  LDV+      + +P     +GE+ +RG  V +GY   P+
Sbjct: 365 ----------GSIGLMLPGIELDVVSLDDPTKVLPPG--EVGELRIRGPNVTRGYWNRPE 412

Query: 379 ANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEA 438
            + EAF    F +GD+     D Y  + DR KD+IISGG N+    +E+ +Y HP V E 
Sbjct: 413 ESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEV 472

Query: 439 AVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALP 497
            V+  PD+  GE+  AFV L+P A      +L      F   K+  + +P +V F   LP
Sbjct: 473 IVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRA----FLAGKLGKHELPVAVEFVDELP 528

Query: 498 KSATGKIQKHLLR 510
           ++  GK+ +H LR
Sbjct: 529 RTPVGKLSRHELR 541

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  128 bits (324), Expect = 2e-32
 Identities = 99/365 (27%), Positives = 153/365 (41%), Gaps = 45/365 (12%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWSLAA 216
           +TSG+T  PKGV +SH    L S    ++  + + EG VF    P F  +   +    A 
Sbjct: 104 FTSGSTGKPKGVQISHAN--LASFLDWMVEDFDLTEGDVFSNQAP-FSFDLSVFDLFPAL 160

Query: 217 LCGTSICL--RQVTA--KAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILP-LTNV 269
             G ++ +  ++  A   A++  +  HG+T + + P    ++   S E     LP L   
Sbjct: 161 ASGATLYVIPKEQIADPLALFEFLKEHGLTVWVSVPSFA-SLLLLSRELNPESLPSLRTF 219

Query: 270 VNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARL 327
           +     G   P  L  A+ ++    RI + YG TE T   +V A+  E    P      L
Sbjct: 220 L---FCGEVLPKKLAKALRRRFPNARIINLYGPTEATV--AVTAY--EVTPEPLSRNEPL 272

Query: 328 ---NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 384
                + G+R +      ++D    +PVP      GE+V+ G  V  GYL NP+   +AF
Sbjct: 273 PIGYPKPGLRAL------ILDED-GRPVPPG--EEGELVIAGPQVSPGYLNNPEKTAKAF 323

Query: 385 ----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 440
                  W+ +GDL     D  +    R    I   G  I   E+E  L   P V EA V
Sbjct: 324 FQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVV 383

Query: 441 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKS 499
           +  P         AFV  K  A         + + K  + ++P Y +P+  V+  +LP +
Sbjct: 384 LPVPKGEKVVRLVAFVVGKEGA------LDTKALKKELKKRLPPYMIPRRFVYLDSLPLN 437

Query: 500 ATGKI 504
           A GKI
Sbjct: 438 ANGKI 442

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  128 bits (325), Expect = 3e-32
 Identities = 108/362 (29%), Positives = 156/362 (43%), Gaps = 49/362 (13%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 218
           +TSG+   PKGVV+SHR         A +  +N   V L  LP+FH  G + T  L  L 
Sbjct: 152 FTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFGLTVTLLLPLLT 211

Query: 219 GTSICLRQVT------AKAVYTAIATHGVTHFCAAPVVLNAIA-NASPEDTILPLTNVVN 271
           G    LR V       AK +   I  +  T  C  P  L   A NA PED    L  VV 
Sbjct: 212 G----LRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLRGYARNAHPEDF-SSLRLVV- 265

Query: 272 VNTAGAPPPPSLLFAMSQKGF--RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 329
              AGA   P     + ++ F  RI   YG TE +   SV        + P      +  
Sbjct: 266 ---AGAEKLPEATRELFEEKFGIRILEGYGATECSPVISV--------NTP------MGN 308

Query: 330 RQGVRTICLDGLDV--IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPK--ANEEAFA 385
           + G     L G++V  +   T++ +P      G +++RG  VM GYL N +  +  E   
Sbjct: 309 KPGTVGRPLPGIEVRIVSPETHEELPIG--EGGLLLVRGPNVMSGYLNNEEKTSEVEVLG 366

Query: 386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH-PLVLEAAVVARP 444
           +GW+ +GD+     D ++ I  RLK     GGE +S   VE++L    P     A V  P
Sbjct: 367 DGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEVP 426

Query: 445 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKSVVF-AALPKSATG 502
           DE+ GE      T   + D        E+++   R A +P+  VP+ ++    +P   +G
Sbjct: 427 DEKKGEKIVLLTTT-EDLDP-------EELNAILREAGLPNLAVPRKILHVDEIPLLGSG 478

Query: 503 KI 504
           K 
Sbjct: 479 KT 480

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score =  128 bits (323), Expect = 7e-32
 Identities = 136/507 (26%), Positives = 207/507 (40%), Gaps = 60/507 (11%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             + V++          A FGA +AG V   IN  L A  VA IL+  +  +++   E  
Sbjct: 49  RGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERL 108

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
            L   AL        G      LI++GD +  S+            + K L  GD +   
Sbjct: 109 DLLHPALP-------GCHDLRTLIIVGDPAHASEGHPGEEP---ASWPKLLALGDAD--- 155

Query: 146 KPPEDEWQS--IALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMF 203
            PP     S   A+ YTSG+T  PKGVV+SHR     + + A           L  LP+ 
Sbjct: 156 -PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLS 214

Query: 204 HGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN-ASPEDT 262
              G++   +   +  T +    +  + V  A+  HG+T   A P +   +A    PE  
Sbjct: 215 FDYGFNQLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPESA 274

Query: 263 ILPLTNVVNVNTAGAPPPPSL-----LFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD 317
              L  + N  + GA P  +L         +    R+   YGLTE        A++  + 
Sbjct: 275 APSLRYLTN--SGGAMPRATLSRLRSFLPNA----RLFLMYGLTE--------AFRSTY- 319

Query: 318 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP 377
            LP E   R     G + I    + V+    ++  P +    GE+V RG+ V  GY  +P
Sbjct: 320 -LPPEEVDRRPDSIG-KAIPNAEVLVLREDGSECAPGE---EGELVHRGALVAMGYWNDP 374

Query: 378 KANEEAF-ANGWFH-----------SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEV 425
           +   E F     F            SGD   +  + ++    R  ++I + G  +S  EV
Sbjct: 375 EKTAERFRPLPPFPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEV 434

Query: 426 EKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY 485
           E+V Y   LV EA     PD   G++    VT  P  +ELD+      +   CRA++P+Y
Sbjct: 435 EEVAYATGLVAEAVAFGVPDPTLGQAIVLVVT-PPGGEELDR----AALLAECRARLPNY 489

Query: 486 WVPKSVVFA-ALPKSATGKIQKHLLRA 511
            VP  +    ALP++A GKI +  L  
Sbjct: 490 MVPALIHVRQALPRNANGKIDRKALAK 516

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score =  127 bits (321), Expect = 2e-31
 Identities = 135/530 (25%), Positives = 207/530 (39%), Gaps = 84/530 (15%)

Query: 2   DQSTT--RGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINI 59
           +QS    RG+   GV             D V+V+A N      A + A   GA +  +N 
Sbjct: 82  EQSNALARGLLALGV----------RAGDGVAVLARNHRGFVLALYAAGKVGARIILLNT 131

Query: 60  RLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSK 119
             +   +A + +      ++ D EF  L       +     G+L+        DE   S 
Sbjct: 132 GFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDL-----GRLRAWGGNPDDDEPSGS- 185

Query: 120 QLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYL 179
                        +  +         KPP+     I +  TSGTT +PKG         L
Sbjct: 186 --------TDETLDDLIAGSSTAPLPKPPKPG--GIVI-LTSGTTGTPKGAPRPEPSP-L 233

Query: 180 MSLNGALI----WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQV-TAKAVYT 234
             L   L+    +   E    L   PMFH  GW+   +LA   G+++ LR+    +A   
Sbjct: 234 APL-AGLLSRVPFRAGE--TTLLPAPMFHATGWA-HLTLAMALGSTVVLRRRFDPEATLE 289

Query: 235 AIATHGVTHFCAAPVVLNAIANASPEDTILP-LTNVVNVNTAGAPPPPSLLF-AMSQKGF 292
            IA H  T     PV+L+ I +  PE       +++  +  +G+   P L   A+   G 
Sbjct: 290 DIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGP 349

Query: 293 RITHTYGLTEL-----TGPASV-----CAWKPEWDSLPFETQARLNARQGVRTICLDGLD 342
            + + YG TE+       P  +        +P                +GV    LD   
Sbjct: 350 VLYNLYGSTEVAFATIATPEDLAEAPGTVGRPP---------------KGVTVKILDENG 394

Query: 343 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNY 402
                    VP     +G I +      +GY  + +  +    +G   SGD+     D  
Sbjct: 395 -------NEVP--RGVVGRIFVGNGFPFEGY-TDGRDKQII--DGLLSSGDVGYFDEDGL 442

Query: 403 IEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEA 462
           + +  R  D+I+SGGEN+   EVE +L  HP V+EAAV+   DE +G+   AFV   P A
Sbjct: 443 LFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGA 502

Query: 463 DELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRA 511
             LD     + +  + R  +  Y VP+ VVF   LP++ TGK+ K  LR 
Sbjct: 503 A-LD----EDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELRE 547

Length = 549

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score =  127 bits (320), Expect = 2e-31
 Identities = 138/510 (27%), Positives = 199/510 (39%), Gaps = 54/510 (10%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V+V  PN              GA + ++N R  +  VA IL    +  ++V   F 
Sbjct: 59  RGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFK 118

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
            + + A  +     +       + V+ D +  +     A A GA      L    P  A 
Sbjct: 119 GI-DFAAILAAVPPDALPPLRAIAVVDDAADATP----APAPGARVQLFALPDPAPPAAA 173

Query: 146 KPPEDEWQSIALGYT-SGTTASPKGVVVSHRGAYLMSLNGAL--IWGMNEGAVFLWTLPM 202
                +  + AL +T SGTT+ PK  +V HR A L+    A+   +G + GAV L  LP 
Sbjct: 174 GERAADPDAGALLFTTSGTTSGPK--LVLHRQATLLRHARAIARAYGYDPGAVLLAALPF 231

Query: 203 FHGNGWSYTWSLAALCG--TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE 260
               G  ++  L AL G    +C     A     A+  H VTH      +L  I + + E
Sbjct: 232 CGVFG--FSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGE 289

Query: 261 DTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD--- 317
               P   +     + AP    L      +G  +T  YG +E+   A V           
Sbjct: 290 RADFPSARLFGF-ASFAPALGELAALARARGVPLTGLYGSSEVQ--ALVALQPATDPVSV 346

Query: 318 -----SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKG 372
                  P   +AR+ AR           D  D      +  DG+  GEI +R   +M+G
Sbjct: 347 RIEGGGRPASPEARVRAR-----------DPQDGA----LLPDGE-SGEIEIRAPSLMRG 390

Query: 373 YLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 431
           YL NP A   A   +G+F +GDL     D     + R+ D +  GG  ++  E+E  L  
Sbjct: 391 YLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEA 450

Query: 432 HPLVLEAAVVARPDERWGES-PCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKS 490
            P V  A VV     R G++ P AFV     A   D       +   CR  +  + VP  
Sbjct: 451 LPGVAAAQVVGA--TRDGKTVPVAFVIPTDGA-SPD----EAGLMAACREALAGFKVPAR 503

Query: 491 VVFA-ALP--KSATG-KIQKHLLRAKAKEM 516
           V    A P  +SA G KIQKH LR  A+  
Sbjct: 504 VQVVEAFPVTESANGAKIQKHRLREMAQAR 533

Length = 540

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  125 bits (315), Expect = 1e-30
 Identities = 85/227 (37%), Positives = 116/227 (51%), Gaps = 26/227 (11%)

Query: 291 GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDG--LDVIDART 348
           G  I   YGLTE +  AS         + P+   ARL    G   I + G  L VID   
Sbjct: 358 GCTIVEGYGLTETSPVAS---------TNPYGELARL----GTVGIPVPGTALKVIDDDG 404

Query: 349 NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKD 407
           N+ +P   +  GE+ ++G  VMKGY + P+A  EA  A GWF +GD+AV  PD ++ I D
Sbjct: 405 NE-LPLGER--GELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVD 461

Query: 408 RLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDK 467
           R KD+II  G N+   E+E V+  HP V   A +  PDER GE+   FV  +      D 
Sbjct: 462 RKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVAR------DP 515

Query: 468 GKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKA 513
           G   E++  +C+     Y VPK +V   +LP +  GKI +  LR  A
Sbjct: 516 GLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDIA 562

Length = 562

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  124 bits (313), Expect = 2e-30
 Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 7/154 (4%)

Query: 359 IGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGG 417
           +GE+ ++G  VMKGY + P+A +E   ++GW  +GD+A+   D Y+ I DR KD+I+  G
Sbjct: 404 VGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSG 463

Query: 418 ENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKF 477
            N+   E+E VL   P VL+ A +  PDE+ GE+   FV +KP           E V + 
Sbjct: 464 FNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGE-----TLTKEQVMEH 518

Query: 478 CRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLR 510
            RA +  Y VPK+V F   LP +  GKI +  LR
Sbjct: 519 MRANLTGYKVPKAVEFRDELPTTNVGKILRRELR 552

Length = 562

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score =  122 bits (309), Expect = 6e-30
 Identities = 129/497 (25%), Positives = 204/497 (41%), Gaps = 55/497 (11%)

Query: 23  PSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 82
           P     +V ++  N     EA   A   GA +  +N       +A +++      VI D+
Sbjct: 89  PIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDE 148

Query: 83  EFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE 142
           EF +  + AL             P    I   + +   L   +   A   ++        
Sbjct: 149 EFSATVDRALA----------DCPQATRIVAWTDEDHDLTVEVLIAAHAGQR-------- 190

Query: 143 FAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAY--LMSLNGALIWGMNEGAVFLWTL 200
               P     +   +  TSGTT +PKG   S  G    L ++     W   E    +   
Sbjct: 191 ----PEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEE--PTVIVA 244

Query: 201 PMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE 260
           PMFH  G+S     A+L  T +  R+   +A    I  H  T     PV+ + I +   E
Sbjct: 245 PMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAE 304

Query: 261 DTILPLTNVVNVNTA-GAPPPPSLLFA-MSQKGFRITHTYGLTELTGPASVCAWKPEWDS 318
                    +    A G+   P ++ A M Q G  I + Y  TE    A + A      +
Sbjct: 305 VRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATE----AGMIA-----TA 355

Query: 319 LPFETQARLN--ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
            P + +A  +   R    T     + ++D    + VP  G+ +G I +R      GY   
Sbjct: 356 TPADLRAAPDTAGRPAEGTE----IRILDQDFRE-VP-TGE-VGTIFVRNDTQFDGY--T 406

Query: 377 PKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL 436
             + ++ F +G+  SGD+     +  + +  R  ++I+SGGEN+  +EVEK L  HP V 
Sbjct: 407 SGSTKD-FHDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVA 465

Query: 437 EAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKS-VVFAA 495
           EAAV+   DE++G+   AFV LKP A         E + +  R  + +Y VP+  VV   
Sbjct: 466 EAAVIGVDDEQYGQRLAAFVVLKPGA-----SATPETLKQHVRDNLANYKVPRDIVVLDE 520

Query: 496 LPKSATGKIQKHLLRAK 512
           LP+ ATGKI +  L+A+
Sbjct: 521 LPRGATGKILRRELQAR 537

Length = 537

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  121 bits (306), Expect = 1e-29
 Identities = 134/503 (26%), Positives = 209/503 (41%), Gaps = 56/503 (11%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V+VI P VP  +         G V     I+L A  + + L  AS A  IV  +  
Sbjct: 66  RGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYRL-QASKAKCIVTSDEL 124

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
           + A +++     + + KL      ++ + S D       L + A      ++T   E   
Sbjct: 125 APAVDSIASECPSLKTKL------LVSEHSRDGWLNFKELLKEASTEHTCVKTKSQE--- 175

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYL-MSLNGALIWGMNEGAVFLWTLPMFH 204
                    +A+ +TSGTT  PK    SH    L + +NG     +    +  W +    
Sbjct: 176 --------PMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIM-WNMS--- 223

Query: 205 GNGW--SYTWSLAA--LCGTSIC---LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA 257
             GW  +  WSL +  + G  +    L +   K +   ++ + +T FC+AP V   +   
Sbjct: 224 DTGWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQ- 282

Query: 258 SPED-TILPLTNVVNVNTAGAPPPPSLLFA-MSQKGFRITHTYGLTELTGPASVCAWKPE 315
             +D T     ++ +  T G P  P +L    +Q G  +   YG TE TG   +CA    
Sbjct: 283 --QDLTSYKFKSLRHCVTGGEPLNPEVLEQWKAQTGLDLYEGYGQTE-TG--LICA---- 333

Query: 316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-----CVM 370
                F+         G  +   D + +ID   N   P    T G+I +R       C+ 
Sbjct: 334 ----NFKGMKIKPGSMGKASPPYD-VQIIDDNGNVLPPG---TEGDIGIRVKPTRPFCLF 385

Query: 371 KGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLY 430
             Y+ NP+         ++ +GD  +   D Y     R  DVI S G  I   EVE  L 
Sbjct: 386 SCYVDNPEKTAATIRGDFYITGDRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALI 445

Query: 431 LHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKS 490
            HP V+E+AVV+ PD   GE   AFV L P+    D  +L +++ +  ++    Y  P+ 
Sbjct: 446 EHPAVVESAVVSSPDPIRGEVVKAFVVLAPQFLSHDPEQLTKELQEHVKSVTAPYKYPRK 505

Query: 491 VVFAA-LPKSATGKIQKHLLRAK 512
           V F   LPK+ TGKI+++ LR K
Sbjct: 506 VEFVQELPKTITGKIKRNELRDK 528

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score =  119 bits (301), Expect = 3e-29
 Identities = 96/381 (25%), Positives = 143/381 (37%), Gaps = 68/381 (17%)

Query: 159 YTSGTTASPKGVVVSHRGA--YLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY------ 210
           YTSG+T  PKGVV++HR    +L +    L  G+  G   L           S       
Sbjct: 106 YTSGSTGKPKGVVITHRNICNFLRAEGAIL--GIRPGDRVL--------QFASIAFDVSI 155

Query: 211 -----TWSL-AALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 264
                T      L    I   ++  + +   +    VT     P +L  +    PED   
Sbjct: 156 LEIFTTLLAGGTLV---IPPEELRLEDLAEFLNRLRVTVAHLTPSLLALL---DPED--- 206

Query: 265 PLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQ 324
            + ++  +   G   P +L+   S+   R+ +TYG TE T  A+     P          
Sbjct: 207 -VPSLRTLILGGEACPQALVDRWSKPR-RLLNTYGPTEATVTATASRLTP---------- 254

Query: 325 ARLNARQGVRTI--CLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
                      I   L      V+D      VP     +GE+ + G  V +GYL  P+  
Sbjct: 255 ------GKPVNIGRPLPNYTCWVLDPDLEPLVPIG--AVGELCIGGPGVARGYLNRPELT 306

Query: 381 EEAFANG--W--------FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLY 430
            E F     W        + +GDL     D  +E   R  D +   G+ I   E+E VL 
Sbjct: 307 AEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLR 366

Query: 431 LHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP-K 489
             P V+ AAVV   D+  G+   AF+ +   A           +    R ++PSY VP  
Sbjct: 367 ALPGVVVAAVVLLLDDPGGKQLVAFLAVDGAAGGEPADVDIALLRSALRERLPSYMVPSV 426

Query: 490 SVVFAALPKSATGKIQKHLLR 510
            V    LP +A+GK+ +  LR
Sbjct: 427 YVPLDELPLTASGKVDRKALR 447

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  120 bits (304), Expect = 3e-29
 Identities = 139/561 (24%), Positives = 196/561 (34%), Gaps = 132/561 (23%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAV-----LNSINIRLNATVVAFILSHASSAVVIV 80
           P D V ++AP       A FG   AGA+           R  A + A IL+ A +  V+ 
Sbjct: 46  PGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRLGRHLARLAA-ILADAGARAVLT 104

Query: 81  DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGD 140
                +    AL      +        LI   D          A    A           
Sbjct: 105 TSAVLAALRAAL------AAPAALLLLLIAADD---------LAALAAA----------- 138

Query: 141 PEFAWKPPEDEWQSIA-LGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVF 196
               W+PP  +   IA L YTSG+T +PKGV+V+H    L++ N   I   +G++   V 
Sbjct: 139 ---DWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGN--LLA-NLRAIARAFGLDPDDVG 192

Query: 197 L-WTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYT--------------AIATHGV 241
           + W LP++H  G           G            V                AI+ +  
Sbjct: 193 VSW-LPLYHDMGLIGGLLQPLYAGFP---------VVLMSPLAFLRRPLRWLEAISRYRA 242

Query: 242 THFCAAPVVLN-----AIANASPEDTILPL-----TNVVNVNTAGAPP-PPSLLFAMSQK 290
           T    AP   N      +     E  +  L         N    GA P     L   +++
Sbjct: 243 TV-SGAP---NFAYDLCVRRVRDEQ-LAGLDLSSWRVAFN----GAEPVRADTLERFAER 293

Query: 291 ----GFR---ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNAR--------QGVRT 335
               GFR       YGL E T   S          L  +  A                R 
Sbjct: 294 FAPAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARE 353

Query: 336 I-----CLDGLDV--IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF---- 384
           +      L G +V  +D  T +P+P     +GEI +RG  V  GY   P+A  E F    
Sbjct: 354 LVSCGRPLPGHEVRIVDPETRRPLPDG--EVGEIWVRGPSVAAGYWNRPEATAETFGARL 411

Query: 385 ---ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLY-LHPLVLEAAV 440
                GW  +GDL   H D  + +  RLKD+II  G N    ++E  +   HP +   A 
Sbjct: 412 ATDEGGWLRTGDLGFLH-DGELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAA 470

Query: 441 VARPDERWGESPCAFVT-LKPEADELDKGKLAEDVSKFCRAKMPSYWV-PKSVVFA---A 495
            A   +  GE     V  ++      D   LAE +     A    + V P  VV      
Sbjct: 471 AAFSVDGDGEERLVVVAEVRRRGLPADLAALAEAI---RAAVAREHGVAPADVVLVRPGT 527

Query: 496 LPKSATGKIQKHLLRAKAKEM 516
           LPK+++GKIQ    R   +E+
Sbjct: 528 LPKTSSGKIQ----RRACREL 544

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  118 bits (297), Expect = 3e-28
 Identities = 62/159 (38%), Positives = 82/159 (51%), Gaps = 8/159 (5%)

Query: 358 TIGEIVMRGSCVMKGYLKNPKANEEA-FANGWFHSGDLAVKHPDNYIEIKDRLKDVIISG 416
             GEI +RG  VM GY   P    +   A+G+F +GD+ V     Y +I DR KD+I+  
Sbjct: 405 EPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVS 464

Query: 417 GENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK 476
           G N+   E+E+V+  HP VLE A V  PDE  GE+   FV  K      D     EDV  
Sbjct: 465 GFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKK------DPALTEEDVKA 518

Query: 477 FCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLRAKAK 514
           FC+ ++ +Y  PK V F   LPK+  GKI +  LR    
Sbjct: 519 FCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRDGKA 557

Length = 557

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score =  117 bits (296), Expect = 4e-28
 Identities = 132/509 (25%), Positives = 194/509 (38%), Gaps = 84/509 (16%)

Query: 30  VSVIAPNVPAMYEAQFGAPMAGAVLNSIN-IRLNATVVAFILSHASSAVVIVDQEFFSLA 88
           V V+  N P M      A + G VL  +N  R  A + A I   A   +++ D E   L 
Sbjct: 55  VGVLLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADI-RRADCQLLVTDAEHRPLL 113

Query: 89  EEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
           +                  L + G    D     YA    A                   
Sbjct: 114 DG-----------------LDLPGVRVLDVDTPAYAELVAA----------AGALTPHRE 146

Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGN 206
            D      L +TSGTT +PK V  SH    L     AL   +G+    V   ++P+FH N
Sbjct: 147 VDAMDPFMLIFTSGTTGAPKAVRCSH--GRLAFAGRALTERFGLTRDDVCYVSMPLFHSN 204

Query: 207 GWSYTWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIAN--ASPE--- 260
                W+ A   G ++ L  + +A      +  +G T+F     V   +A   A+PE   
Sbjct: 205 AVMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYF---NYVGKPLAYILATPERPD 261

Query: 261 DTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSL 319
           D   PL  V   N A     P  +   S++ G ++   YG +E  G   V          
Sbjct: 262 DADNPLR-VAFGNEAS----PRDIAEFSRRFGCQVEDGYGSSE--GAVIV---------- 304

Query: 320 PFETQARLNARQGVRTICLDGLDVIDARTNQPVP-----ADGK------TIGEIV-MRGS 367
               +       G       G+ + +  T          A G        IGE+V   G+
Sbjct: 305 ---VREP-GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGA 360

Query: 368 CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEK 427
              +GY  NP+A  E   +G + SGDLA +  D +I    R  D +   GEN+S+  +E+
Sbjct: 361 GFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIER 420

Query: 428 VLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK--MPSY 485
           +L  HP +   AV A PDER G+   A + L+  A   D    A     F  A+  + + 
Sbjct: 421 ILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGAT-FDPDAFAA----FLAAQPDLGTK 475

Query: 486 WVPKSV-VFAALPKSATGKIQKHLLRAKA 513
             P+ V + A LP +AT K+ K  L A+ 
Sbjct: 476 AWPRYVRIAADLPSTATNKVLKRELIAQG 504

Length = 540

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  116 bits (293), Expect = 8e-28
 Identities = 62/156 (39%), Positives = 86/156 (55%), Gaps = 7/156 (4%)

Query: 360 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGEN 419
           GE+ ++G  VM GY + P+A +E   +GW  +GD+AV   + ++ I DR KD+I+  G N
Sbjct: 405 GELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFN 464

Query: 420 ISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCR 479
           +   E+E V+ LHP VLE A V  P E  GE+   FV  K      D     E++   CR
Sbjct: 465 VYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKK------DPSLTEEELITHCR 518

Query: 480 AKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAK 514
             +  Y VPK V F   LPKS  GKI +  LR +A+
Sbjct: 519 RHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEAR 554

Length = 560

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score =  116 bits (291), Expect = 1e-27
 Identities = 96/372 (25%), Positives = 165/372 (44%), Gaps = 36/372 (9%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALI-WGMNEGAVFLWTLPMFHGNGWSYTWSLAAL 217
           +T GTT  PK V  +H      S+   +  + ++     +  +P++HG+G      +AAL
Sbjct: 183 FTGGTTGLPKMVPWTH-ANIASSVRAIITGYRLSPRDATVAVMPLYHGHGL-----IAAL 236

Query: 218 CGTSICLRQV--------TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 269
             T      V        +A   +  I   G T + A P +   +   +  +        
Sbjct: 237 LATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAA 296

Query: 270 VN-VNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWK-PEWDSLPFETQAR 326
           +  + +  AP       A+  +    +   +G+TE T   +    +       P  +   
Sbjct: 297 LRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGL 356

Query: 327 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN 386
           +    G + I + G D        P+PA    +GE+ +RG+ V++GYL +P      F +
Sbjct: 357 VGRSTGAQ-IRIVGSD------GLPLPAG--AVGEVWLRGTTVVRGYLGDPTITAANFTD 407

Query: 387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 446
           GW  +GDL        + I+ R+K++I  GGE IS   VE VL  HP V+EAAV   PD+
Sbjct: 408 GWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQ 467

Query: 447 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQ 505
            +GE+  A +  +  A        AE++ +FCR ++ ++ +P S   A+ LP +A G + 
Sbjct: 468 LYGEAVAAVIVPRESA-----PPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLD 522

Query: 506 KHLLRAKAKEMG 517
           +   RA A++ G
Sbjct: 523 R---RAVAEQFG 531

Length = 534

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score =  115 bits (290), Expect = 2e-27
 Identities = 71/189 (37%), Positives = 102/189 (53%), Gaps = 15/189 (7%)

Query: 331 QGVRTICLDG-LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGW 388
           QG R +  D  + V DA  N P+P  G  +G ++ RG    +GY K+P+ N  AF ANG+
Sbjct: 355 QG-RPMSPDDEVWVADADGN-PLP-QG-EVGRLMTRGPYTFRGYYKSPQHNASAFDANGF 410

Query: 389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 448
           + SGDL    PD YI +  R KD I  GGE I++ E+E +L  HP V+ AA+V+  DE  
Sbjct: 411 YCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELM 470

Query: 449 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSV-VFAALPKSATGKIQK 506
           GE  CAF+ +K   + L     A  + +F R + +  + +P  V    +LP +A GK+ K
Sbjct: 471 GEKSCAFLVVK---EPLK----AVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDK 523

Query: 507 HLLRAKAKE 515
             LR     
Sbjct: 524 KQLRQWLAS 532

Length = 536

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score =  114 bits (288), Expect = 2e-27
 Identities = 129/507 (25%), Positives = 200/507 (39%), Gaps = 74/507 (14%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAV-LNSINIRLNATVVAFILSHASSAVVIVD--Q 82
             D   V  PN+   Y   F     G   + ++     + + A+  S    A+ I+D   
Sbjct: 72  QGDTAVVQLPNIAEFYIVFFALLKLGVAPVLALFSHRKSELTAYA-SQIEPALYIIDRAH 130

Query: 83  EFF---SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETG 139
             F     A +           KL T   I++  ++               E E FL   
Sbjct: 131 SLFDYDDFARQLQS--------KLPTLRNIIVAGQT--------------GEAELFLWLE 168

Query: 140 DPEFAWKPPEDEWQSIA-LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLW 198
            P    K P  +   +A    + G+T +PK +  +H   Y        I  + +   +L 
Sbjct: 169 SPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLC 228

Query: 199 TLPMFHGNGWSYTWSLAALC--GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN 256
            LP  H    S   +L      G  +     +    +  I  H VT     P  +     
Sbjct: 229 ALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQ 288

Query: 257 ASPEDTI-LPLTNVVNVNTAG-----APPPPSLLFAMSQKGFRITHTYGL---TELTGPA 307
           A+ +    L    ++ V  A      A   P++     Q+ F +    GL   T L  P 
Sbjct: 289 AASKSRADLSSLKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAE--GLVNYTRLDDP- 345

Query: 308 SVCAWKPEWDSLPFETQARLNARQGVRTICL-DGLDVIDARTNQPVPADGKTIGEIVMRG 366
                      + F TQ R         +   D + V+D     PV A G+T G ++ RG
Sbjct: 346 ---------AEIIFTTQGR--------PMSPDDEVRVVDDH-GNPV-APGET-GMLLTRG 385

Query: 367 SCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEV 425
               +GY K P+ N  AF A G++++GDL    P+ YI +  R KD I  GGE I++ E+
Sbjct: 386 PYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEI 445

Query: 426 EKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPS 484
           E +L  HP V +AA+V+ PDE  GE  CAF+ ++  A +      A  + +F R + +  
Sbjct: 446 ENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPALK------AAQLRRFLRERGLAE 499

Query: 485 YWVPKSVVFA-ALPKSATGKIQKHLLR 510
           Y +P  V F  +LP +A GK+ K  LR
Sbjct: 500 YKLPDRVEFVDSLPLTAVGKVDKKALR 526

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  111 bits (280), Expect = 6e-27
 Identities = 102/381 (26%), Positives = 154/381 (40%), Gaps = 68/381 (17%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGM---------------NEGAVFLWTLPMF 203
           YT GTT  PKGV+          L G   +                   G  FL   P+ 
Sbjct: 10  YTGGTTGMPKGVMWRQ-EDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACPLM 68

Query: 204 HGNG-WSYTWSLAALC-GTSICL---RQVTAKAVYTAIATHGVTHFC------AAPVVLN 252
           HG G W    +L+AL  G ++ L    +     V+  +  H V          A P+ L 
Sbjct: 69  HGAGQWL---ALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARPL-LE 124

Query: 253 AIANASPEDTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTG-PA 307
           A+  A   D    L+++  ++++GA   P     LL  +      +    G +E  G  +
Sbjct: 125 ALEAAGRYD----LSSLRAISSSGAMWSPEVKQGLLELLP--NLALVDALGASETGGGGS 178

Query: 308 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS 367
           SV        +  FE         G  T+      V+D   ++  P  G+  G I   G 
Sbjct: 179 SVSRAGGASATGKFEL--------GPDTV------VLDEDGSEVPPGSGEV-GWIARGGR 223

Query: 368 CVMKGYLKNPKANEEAF--ANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSV 423
            V  GY K+P+   + F   +G  +   GD A    D  I +  R    I +GGE +   
Sbjct: 224 -VPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVFPE 282

Query: 424 EVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP 483
           EVE+ L  HP V +A VV  PDERWG+   A V L+  A  LD      ++   CR  + 
Sbjct: 283 EVEEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGA-GLD----LAELRDHCRQHLA 337

Query: 484 SYWVPKSVVF-AALPKSATGK 503
            Y +P+++V    +P++ +GK
Sbjct: 338 GYKLPRAIVVVDTVPRAPSGK 358

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  112 bits (283), Expect = 1e-26
 Identities = 65/179 (36%), Positives = 92/179 (51%), Gaps = 9/179 (5%)

Query: 340 GLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP-KANEEAFANGWFHSGDLAVKH 398
            L V D  T   +P     IG I ++G  V KGY + P K  EE  A+G+F +GDL    
Sbjct: 331 SLRVTDPETGAELPPGE--IGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKID 388

Query: 399 PDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTL 458
              Y+ I  R KD+IISGG N+   EVE  +   P V+E+AV+  P   +GE   A V  
Sbjct: 389 ERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVP 448

Query: 459 KPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 516
           KP A  LD       +    + ++  +  PK V F   LP++  GK+QK+LLR +  ++
Sbjct: 449 KPGAA-LD----EAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADL 502

Length = 504

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score =  109 bits (275), Expect = 1e-25
 Identities = 115/412 (27%), Positives = 177/412 (42%), Gaps = 60/412 (14%)

Query: 128 GAIEYEKFLETGDPEFAWKPPEDEWQS----IALGY-TSGTTASPKGVVVSHRGAY-LMS 181
           G I+++K +E   P+F  + P     +    I L Y TSGTT  PK  +V H   Y L  
Sbjct: 158 GWIDFDKEIENASPDF--ERPTGNDATCNDDILLVYFTSGTTGMPK--MVEHDHTYPLGH 213

Query: 182 LNGALIW-GMNEGAVFL------WTLPMFHGNGWSY-TWSLAALCGTSICL---RQVTAK 230
           +  A  W  + EG + L      W   ++   G  Y  W    + G ++ +    +   K
Sbjct: 214 IVTAKYWQNVKEGGLHLTVADTGWGKAVW---GKLYGQW----IAGAAVFVYDYDKFDPK 266

Query: 231 AVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK 290
            +   I  +GVT FCA P +   +           L+++    TAG P  P +     +K
Sbjct: 267 NLLEKIEKYGVTTFCAPPTIYRFLIKEDLSK--YDLSSLRYCTTAGEPLNPEVFNTFKEK 324

Query: 291 -GFRITHTYGLTELTGPASVCAW-KPEWDSLPFETQARLNARQGVRTICLDGLDVIDART 348
            G ++   +G TE T   +   W +P+  S+      + +    +  I  DG        
Sbjct: 325 TGIKLMEGFGQTETTLTIATFPWMEPKPGSM-----GKPSPGYDIDIIDPDG-------- 371

Query: 349 NQPVPADGKTIGEIVMRGS-----CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYI 403
            +     G+  GEIV+R S      +  GY ++P+   E + +G++H+GD A    D Y+
Sbjct: 372 -KSCEV-GEE-GEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGYYHTGDTAWMDEDGYL 428

Query: 404 EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKP--E 461
               R  D+I S G  I   EVE  L  HP VLE AV   PD   G+   A + L    E
Sbjct: 429 WFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKGYE 488

Query: 462 ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK 512
             E  K +L + V K        Y  P+ + F   LPK+ +GKI++  +R K
Sbjct: 489 PSEELKKELQDHVKK----VTAPYKYPRIIEFVDELPKTISGKIRRVEIREK 536

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  106 bits (265), Expect = 3e-24
 Identities = 61/158 (38%), Positives = 84/158 (53%), Gaps = 8/158 (5%)

Query: 359 IGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGG 417
           IGE+ ++G  VMKGY K P+   +   A+GW H+GD+A      ++ I DR KD+I+  G
Sbjct: 408 IGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSG 467

Query: 418 ENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKF 477
            N+   E+E V+ + P VLE A V  PDE+ GE     +  K      D    AEDV   
Sbjct: 468 FNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK------DPALTAEDVKAH 521

Query: 478 CRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLRAKAK 514
            RA +  Y  P+ + F   LPK+  GKI +  LR  AK
Sbjct: 522 ARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDAAK 559

Length = 560

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score =  105 bits (263), Expect = 3e-24
 Identities = 123/498 (24%), Positives = 204/498 (40%), Gaps = 57/498 (11%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D+V++++ N P      + A  +G  + +IN  L A    +I+  + + V++      
Sbjct: 48  TGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLV------ 101

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
             A  AL  + A     L  P  +  G E             G   +E  L    P    
Sbjct: 102 --ASAALDGLAAKVGADL--PLRLSFGGE-----------IDGFGSFEAALAGAGPRLTE 146

Query: 146 KPPEDEWQSIALGYTSGTTASPKGV-------VVSHRGAYLMSLNGALIWGMNEGAVFLW 198
           +P         + Y+SGTT  PKG+        V   G  ++++  A  + ++E  ++  
Sbjct: 147 QPC-----GAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAF-YDISESDIYYS 200

Query: 199 TLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANAS 258
           + P++H     +   + AL GT +  ++  A+A    +  + +T     P +   +    
Sbjct: 201 SAPIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLD 260

Query: 259 PE-DTILPLTNVVNVNTAGAPPPPSLLFAM-SQKGFRITHTYGLTELTGPASVCAWKPEW 316
            +  T   ++++  V  A AP P  +  AM    G  +   Y  TE  G   + +  P+W
Sbjct: 261 ADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDS--PDW 318

Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
            + P            V    L  L + D   N+ +PA    IG +      +   YL +
Sbjct: 319 LAHP----------GSVGRSVLGDLHICDDDGNE-LPAG--RIGTVYFERDRLPFRYLND 365

Query: 377 PKANEEAFANG---WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 433
           P+    A       W   GDL     D Y+ + DR   +IISGG NI   E E  L +HP
Sbjct: 366 PEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHP 425

Query: 434 LVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF 493
            V + AV+  PD   GE   A + L       D  +LA ++  + R+++  Y  P+SV F
Sbjct: 426 AVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSD--ELARELIDYTRSRIAHYKAPRSVEF 483

Query: 494 A-ALPKSATGKIQKHLLR 510
              LP++ TGK+ K LLR
Sbjct: 484 VDELPRTPTGKLVKGLLR 501

Length = 501

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score =  105 bits (265), Expect = 3e-24
 Identities = 102/381 (26%), Positives = 159/381 (41%), Gaps = 50/381 (13%)

Query: 159 YTSGTTASPKGVVVSHR--GAYLMSLNGAL--IWGMNEGAVFLWTLPMFHGNGW----SY 210
           YTSGTT  PKGVV   R  G Y ++L  ++  I+G+  G VF     +    GW    SY
Sbjct: 227 YTSGTTGKPKGVV---RDTGGYAVALKWSMRNIYGIKPGDVFWAASDV----GWVVGHSY 279

Query: 211 TWSLAALCG-TSIC-----LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 264
                 L G T++      +    A A +  I  +GV     AP  + AI    P+   +
Sbjct: 280 IVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYI 339

Query: 265 ---PLTNVVNVNTAGAP-PPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLP 320
               L+++  +  AG     P+L +     G  +   +  TE TG               
Sbjct: 340 KKYDLSSLRALFLAGERLDSPTLEWIEKTLGVPVIDHWWQTE-TGWPITANCV------- 391

Query: 321 FETQARLNARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPK 378
                 L  + G     + G D  V+D  T + +      +G IV++   +  G L    
Sbjct: 392 --GLELLPIKPGSPGKPVPGYDVQVLDE-TGEELGPG--ELGNIVIKLP-LPPGCLLTLW 445

Query: 379 ANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 431
            ++E F   +         +GD   K  D Y+ +  R  DVI   G  +S+ E+E+ +  
Sbjct: 446 GDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLK 505

Query: 432 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV 491
           HP V E AVV   DE  G+ P   V LK +  ++D  +L  ++    R ++      ++V
Sbjct: 506 HPDVAECAVVGVRDELKGQVPLGLVVLKDDC-KIDADQLENEIVALVREQIGPVAAFRNV 564

Query: 492 VF-AALPKSATGKIQKHLLRA 511
           VF   LPK+ +GKI +  LR 
Sbjct: 565 VFVKRLPKTRSGKILRRTLRK 585

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  104 bits (261), Expect = 4e-24
 Identities = 103/438 (23%), Positives = 155/438 (35%), Gaps = 75/438 (17%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
           P D V+V+      +  A      AGA    ++    A  +AFIL  A + +++ D    
Sbjct: 24  PGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDSALA 83

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
           S     +             P +++   E              A        +G  + A+
Sbjct: 84  SRLAGLV------------LPVILLDPLELAALDDAPAPPPPDA-------PSGPDDLAY 124

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGA--YLMSLNGALIWGMNEGAVFLWTLPM- 202
                      + YTSG+T  PKGVVV+HR     L  L     +G++     L    + 
Sbjct: 125 -----------VIYTSGSTGRPKGVVVTHRSLVNLLAWLARR--YGLDPDDRVLQFASLS 171

Query: 203 FHGNGWSYTWSLAALCGTSICL-----RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA 257
           F  +      +L A  G ++ +      +  A  +   IA H VT     P +L  +A A
Sbjct: 172 FDASVEEIFGALLA--GATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLAAA 229

Query: 258 SPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKG--FRITHTYGLTELTGPASVCAWKPE 315
            P      L ++  V   G    P+L+     +G   R+ + YG TE T           
Sbjct: 230 LPPA----LASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTV---WSTATLV 282

Query: 316 WDSLPFETQARLNARQGVRTI--CLDG--LDVIDARTNQPVPADGKTIGEIVMRGSCVMK 371
                               I   L    L V+D    +PVP     +GE+ + G  V +
Sbjct: 283 DPDDAPRESP--------VPIGRPLANTRLYVLDDD-LRPVPVGV--VGELYIGGPGVAR 331

Query: 372 GYLKNPKANEEAFANGWF---------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISS 422
           GYL  P+   E F    F          +GDL    PD  +E   R+ D +   G  I  
Sbjct: 332 GYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIEL 391

Query: 423 VEVEKVLYLHPLVLEAAV 440
            E+E  L  HP V EA V
Sbjct: 392 GEIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score =  105 bits (265), Expect = 4e-24
 Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 3/129 (2%)

Query: 387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 446
           G++ +GD A +  D Y  I  R+ DVI   G  + + EVE  L  HP V EAAVV +PDE
Sbjct: 463 GYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDE 522

Query: 447 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQ 505
             GE+  AFVTLK   +  D  +L +++ K  R ++     P  ++F   LPK+ +GKI 
Sbjct: 523 VKGEAIYAFVTLKDGVEPSD--ELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIM 580

Query: 506 KHLLRAKAK 514
           + +LR  A 
Sbjct: 581 RRILRKIAA 589

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  105 bits (264), Expect = 9e-24
 Identities = 107/380 (28%), Positives = 160/380 (42%), Gaps = 46/380 (12%)

Query: 159  YTSGTTASPKGVVVSHRGAYLMSLNGAL--IWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 216
            ++SG+   PKGV++SH    ++S    +  ++ +    V L +LP FH  G + T  L  
Sbjct: 789  FSSGSEGEPKGVMLSHHN--ILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPL 846

Query: 217  LCG-TSICLRQVT-AKAVYTAIATHGVTHFCAAPVVLNAIA---NASPED-TILPLTNVV 270
            L G   +     T A  +   +A H  T     P  L          P     L L  VV
Sbjct: 847  LEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRL--VV 904

Query: 271  NVNTAGAPP-PPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN 328
                AGA    P +  A  +K G RI   YG TE +  ASV    P  D L  + + +  
Sbjct: 905  ----AGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNL--P--DVLAADFKRQTG 956

Query: 329  ARQGVRTICLDG--LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP-KANE---E 382
            +++G   + L G  + ++D  T + +P      G I++ G  VMKGYL +P K  E   +
Sbjct: 957  SKEGSVGMPLPGVAVRIVDPETFEELPP--GEDGLILIGGPQVMKGYLGDPEKTAEVIKD 1014

Query: 383  AFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVE----KVLYLHPLVLEA 438
                GW+ +GD      D ++ I DR       GGE +    VE    K L    +V   
Sbjct: 1015 IDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVF-- 1072

Query: 439  AVVARPDERWGESPCAFVTLKP-EADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-AL 496
            AV A PDE+ GE      T    + +EL +  + E       + +P+ W P       AL
Sbjct: 1073 AVTAVPDEKKGEKLVVLHTCGAEDVEELKR-AIKE-------SGLPNLWKPSRYFKVEAL 1124

Query: 497  PKSATGKIQKHLLRAKAKEM 516
            P   +GK+    L+  A  +
Sbjct: 1125 PLLGSGKLDLKGLKELALAL 1144

Length = 1146

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  102 bits (257), Expect = 4e-23
 Identities = 104/432 (24%), Positives = 151/432 (34%), Gaps = 84/432 (19%)

Query: 136 LETGDPEFAWKP--PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEG 193
           L +  P+    P  P+D      L  TSG+T  PK VV++HR     S     + G    
Sbjct: 152 LRSAPPDAPLHPARPDD---PALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPD 208

Query: 194 AVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTA---------IATHGVTHF 244
            V L  +P+ H  G      L  +     C +Q+     Y           I  + VT  
Sbjct: 209 DVSLNWMPLDHVGGIVM-LHLRDVY--LGC-QQIHVPTDYILADPLRWLDLIDRYRVTIT 264

Query: 245 CAAPVVLNAIANASPEDT-----ILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFR-- 293
            A       + +A          +  L  ++N   AG           L  ++  G    
Sbjct: 265 WAPNFAFALLNDALERIEDRSWDLSSLRYIIN---AGEAVVAKTIRRFLELLAPYGLPAD 321

Query: 294 -ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDAR----- 347
            I   +G++E     S   +     S  F T        GV    L G     A      
Sbjct: 322 AIRPAFGMSET---CSGVTY-----SRGFRTGPDTG---GVLVDSLTGPLRFAAADHPEA 370

Query: 348 --------------------TNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-AN 386
                                   +P     +G + +RG  V  GY +NP+AN EAF  +
Sbjct: 371 VTFVELGRPIPGVAIRIVDEDGALLPEG--EVGRLQVRGPTVTSGYYRNPEANAEAFTED 428

Query: 387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE---AAVVAR 443
           GWF +GDL   H D  + I  R KD+II  G N  + E+E  +   P V     AA   R
Sbjct: 429 GWFRTGDLGFLH-DGRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAACAVR 487

Query: 444 PDERWGESPCAFVTLKPEADELDK-GKLAEDVSKFCRAKM---PSYWVPKSVVFAALPKS 499
                 +    F    P  D  D+   L   +      K+   P+Y +P  +     PK+
Sbjct: 488 DAGSGTDELAVFFV--PRYDLDDRLAALLRAIRTHVARKIGIAPAYVIP--LAKEDFPKT 543

Query: 500 ATGKIQKHLLRA 511
           + GKIQ+  LR 
Sbjct: 544 SLGKIQRAQLRK 555

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score =  101 bits (254), Expect = 4e-23
 Identities = 102/369 (27%), Positives = 142/369 (38%), Gaps = 58/369 (15%)

Query: 159 YTSGTTASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLW-TLPMFHGNGWSYTWSLA 215
           YTSG+T  PKGV VSHR    +L+S+      G+      L  T   F  +       L 
Sbjct: 100 YTSGSTGKPKGVEVSHRALVNFLLSMARRP--GLGASDRLLAVTTISFDISVLELLLPL- 156

Query: 216 ALCGTS--ICLRQVT--AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 271
            L G +  I   +     + +   IA   +T   A P     +  A          ++  
Sbjct: 157 -LSGATVVIASAETVRDPERLARLIADERITIMQATPATWRMLLAAGWR----GRESL-- 209

Query: 272 VNTA---GAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN 328
             TA   G   P  L   +   G  + + YG TE T       W          T AR+ 
Sbjct: 210 --TALCGGEALPRDLAERLLSTGAELWNMYGPTETT------IW---------STCARVT 252

Query: 329 ARQGVRTIC--LDG--LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 384
           A  G  TI   +    + V+D    QPVP      GE+ + G  V +GYL  P+   E F
Sbjct: 253 AADGPVTIGRPIANTQVYVLDED-LQPVPPG--VPGELYIGGDGVARGYLGRPELTAERF 309

Query: 385 ANG--------WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL 436
                       + +GDL    PD  +E   R  D +   G  I   E+E  L  HP V 
Sbjct: 310 VPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPGVA 369

Query: 437 EAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKS-VVFAA 495
           +A VV R +    +   A+V  K  A   D    AE +    RA +P+Y VP + V    
Sbjct: 370 DAVVVVREEGPGDQRLVAYVVPKAGA-APD----AEALRAALRATLPAYMVPAAFVQLDE 424

Query: 496 LPKSATGKI 504
           LP +  GK+
Sbjct: 425 LPLTPNGKV 433

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score =  100 bits (251), Expect = 1e-22
 Identities = 105/386 (27%), Positives = 162/386 (41%), Gaps = 67/386 (17%)

Query: 159 YTSGTTASPKGVVVSHRGAYL-MSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSL-- 214
           YTSGTT  PKG V +H G  +  + +    + +  G   LW   M    GW    W +  
Sbjct: 107 YTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKPGDRLLWITDM----GWMMGPWLVLG 162

Query: 215 AALCGTSICLRQVT-----AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP--LT 267
             L G +I L +          ++  +  H VTH   +P ++ A+  A  +  +    L+
Sbjct: 163 GLLLGATIVLYEGAPDYPDPDRLWRIVERHKVTHLGLSPTLIRALR-AHGDAPVEGHDLS 221

Query: 268 NVVNVNTAGAP-PPPSLLFAMSQKGFR---ITHTYGLTELTG---------PASVCAWKP 314
           ++  + + G P  P S L+   + G     I +  G TE++G         P   C++  
Sbjct: 222 SLRVLGSTGEPWDPESWLWLFERVGGGRAPIINYSGGTEISGGILGNVPIRPIKPCSF-- 279

Query: 315 EWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV-M-KG 372
                P           G+        DV+D    +PV      +GE+V+R     M +G
Sbjct: 280 -NGPSP-----------GM------DADVVDED-GRPVR---GEVGELVVRAPWPGMTRG 317

Query: 373 YLKNPKANEEA----FANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKV 428
           + ++P+   E     F   W H GD A+   D Y  I  R  D I   G+ +   E+E V
Sbjct: 318 FWRDPERYLETYWSRFPGVWVH-GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESV 376

Query: 429 LYLHPLVLEAAVVARPDERWGESPCAFVTLKP--EADELDKGKLAEDVSKFCRAKMPSYW 486
           L  HP V EAA +  PD   GE+   FV LKP        + +LA+ V       +   +
Sbjct: 377 LNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPGVTPSAALEAELADHVGD----ALGKPF 432

Query: 487 VPKSVVFA-ALPKSATGKIQKHLLRA 511
            P+ V F   LPK+  GKI + ++RA
Sbjct: 433 RPREVHFVSDLPKTRNGKIMRRVIRA 458

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 99.3 bits (248), Expect = 2e-22
 Identities = 103/382 (26%), Positives = 145/382 (37%), Gaps = 75/382 (19%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 218
           YTSG+T  PKGV + HR A       AL+          W   +F     +       L 
Sbjct: 112 YTSGSTGRPKGVAIEHRNA------AALLQ---------WAAAVFSAEELA-----GVLA 151

Query: 219 GTSICL---------------RQV---TAKAVYTAIATHGVTHFCAAPVVLNAIANASPE 260
            TSIC                R V    A A+    A   VT     P     +      
Sbjct: 152 ATSICFDLSVFEIFVPLSTGGRVVLADNALALPDLPAKAEVTLINTVPSAARELLRHDA- 210

Query: 261 DTILPLTNVVNVNTAGAPPPPSL---LFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD 317
              LP ++V  VN AG P P  L   L+A+ Q   R+ + YG +E T  ++    +P   
Sbjct: 211 ---LP-SSVRTVNLAGEPLPQELVQRLYALPQ-VERVYNLYGPSEDTTYSTYAEVEPGAS 265

Query: 318 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP 377
             P   +     +            V+D    QPVP      GE+ + G+ V +GYL  P
Sbjct: 266 RTPSIGRPLAGTQ----------AYVLD-AHLQPVPV--GVPGELYIGGAGVARGYLGRP 312

Query: 378 KANEEAF-ANGW--------FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKV 428
           +   E F  N +        + +GDL  +  D  +E   R+ D +   G  I   E+E  
Sbjct: 313 ELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEIEAA 372

Query: 429 LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP 488
           L   P V EA VVA  D        A++   P A         ED+      ++P+Y VP
Sbjct: 373 LRSIPGVAEAVVVAIGDAAGDRQLVAYIVADPGAA-----IDIEDLRARLATRLPAYMVP 427

Query: 489 -KSVVFAALPKSATGKIQKHLL 509
            + V   ALP +  GKI +  L
Sbjct: 428 SRFVRLDALPLTPNGKIDRKAL 449

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score =  101 bits (252), Expect = 3e-22
 Identities = 100/367 (27%), Positives = 146/367 (39%), Gaps = 38/367 (10%)

Query: 159  YTSGTTASPKGVVVSHRGAYLMSLNG-ALIWGMNEG-AVFLWTLPMFHGNGWSYTWSLAA 216
            YTSG+T  PKGV V H GA    L   A  + ++    V L+    F G    + W+L  
Sbjct: 3244 YTSGSTGKPKGVGVRH-GALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTL-- 3300

Query: 217  LCGTSICLR---QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVN 273
            +CG  + +R       + ++ AI  H ++  C  P  L   A  +       L   V   
Sbjct: 3301 ICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGGADCASLDIYVFGG 3360

Query: 274  TAGAPPPPSLLFA-MSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQG 332
             A  P     +   +  +G  +T+ YG TE     +V  WK   D++     A +     
Sbjct: 3361 EAVPPAAFEQVKRKLKPRG--LTNGYGPTEAV--VTVTLWKCGGDAVCEAPYAPIGRPVA 3416

Query: 333  VRTI-CLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH- 390
             R+I  LDG          PVP      GE+ + G  + +GY + P    E F    F  
Sbjct: 3417 GRSIYVLDG-------QLNPVPVG--VAGELYIGGVGLARGYHQRPSLTAERFVADPFSG 3467

Query: 391  -------SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 443
                   +GDLA    D  IE   R+   +   G  I   E+E  L  HP V EA V+AR
Sbjct: 3468 SGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLAR 3527

Query: 444  PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATG 502
                 G+   A+V          +G   E +     A +P Y VP  ++  AA+P    G
Sbjct: 3528 DGAG-GKQLVAYVVPADP-----QGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNG 3581

Query: 503  KIQKHLL 509
            K+ +  L
Sbjct: 3582 KVDRKAL 3588

Length = 3956

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 99.2 bits (248), Expect = 3e-22
 Identities = 101/347 (29%), Positives = 141/347 (40%), Gaps = 77/347 (22%)

Query: 148 PEDEWQSIALG---YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLW--TLPM 202
               WQ   L     TSG+T  PK  V + + A+L S  G L   M   A   W  +LP+
Sbjct: 128 HAVAWQPQRLATMTLTSGSTGLPKAAVHTAQ-AHLASAEGVLSL-MPFTAQDSWLLSLPL 185

Query: 203 FH--GNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE 260
           FH  G G  + W L A  G ++ +R    + +  A+A  G TH    P  L  + + +  
Sbjct: 186 FHVSGQGIVWRW-LYA--GATLVVR--DKQPLEQALA--GCTHASLVPTQLWRLLD-NRS 237

Query: 261 DTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPAS-VCAWKPEWDSL 319
           +  L L  V+     GA  P  L     Q+G R    YGLTE+   AS VCA        
Sbjct: 238 EP-LSLKAVL---LGGAAIPVELTEQAEQQGIRCWCGYGLTEM---ASTVCA-------- 282

Query: 320 PFETQARLNARQGV------RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY 373
                 R +   GV      R + L                     GEI +RG+ +  GY
Sbjct: 283 -----KRADGLAGVGSPLPGREVKLVD-------------------GEIWLRGASLALGY 318

Query: 374 LKN----PKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
            +     P  N+E    GWF + D      +  + I  RL ++  SGGE I   E+E+V+
Sbjct: 319 WRQGQLVPLVNDE----GWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVI 373

Query: 430 YLHPLVLEAAVVARPDERWGESPCAFV--TLKPEADELD---KGKLA 471
             HPLV +  VV   D  +G+ P A V    +     L    + KLA
Sbjct: 374 NQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAEWLQDKLA 420

Length = 458

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score =  100 bits (250), Expect = 3e-22
 Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 3/129 (2%)

Query: 387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 446
           G++ +GD A +  D YI I  R+ DVI   G  + + E+E  L  HP V EAAVV  PD+
Sbjct: 475 GYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDD 534

Query: 447 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 505
             G++  AFVTLK   +  D  +L +++ K  R ++     P  + F   LPK+ +GKI 
Sbjct: 535 IKGQAIYAFVTLKDGYEPDD--ELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIM 592

Query: 506 KHLLRAKAK 514
           + LLR  A 
Sbjct: 593 RRLLRKIAA 601

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 98.9 bits (246), Expect = 5e-22
 Identities = 134/525 (25%), Positives = 201/525 (38%), Gaps = 95/525 (18%)

Query: 1   MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR 60
             +S  R +   GVA          P   V V+  N      A F   + GA +  I+  
Sbjct: 69  ATESLARRLTRDGVA----------PGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTE 118

Query: 61  LNATVVAFILSHASSAVVIVDQEF---FSLAEEALKMMEANSEGKLKTPHLIVIGDESCD 117
             +  +A  L     + V+ D EF    + A++A+ +++  +            G E   
Sbjct: 119 FRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPAT-----------AGAEESG 167

Query: 118 SKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGV-----VV 172
                                G P  A   P      I L  TSGTT  PKGV     + 
Sbjct: 168 ---------------------GRPAVA--AP----GRIVL-LTSGTTGKPKGVPRAPQLR 199

Query: 173 SHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAV 232
           S  G ++  L+      +  G+     +PMFHG G        AL GT +  R   A+A 
Sbjct: 200 SAVGVWVTILDRTR---LRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAA 256

Query: 233 YTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFA-MSQK 290
               + H    F A PVVL  I    P      PL  +  V ++G    P+L    M   
Sbjct: 257 LAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY 316

Query: 291 GFRITHTYGLTE-----LTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVID 345
           G  + + YG TE     L  PA +            ET  +  A   VR         I 
Sbjct: 317 GDILYNGYGSTEVGIGALATPADLRDAP--------ETVGKPVAGCPVR---------IL 359

Query: 346 ARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEI 405
            R N+PV    +  G I + G      Y        +A  +G   +GD+        + I
Sbjct: 360 DRNNRPVGP--RVTGRIFVGGELAGTRY---TDGGGKAVVDGMTSTGDMGYLDNAGRLFI 414

Query: 406 KDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADEL 465
             R  D+IISGGEN+    VE  L  HP V + AV+  PDER+G    AFV L P +  +
Sbjct: 415 VGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSG-V 473

Query: 466 DKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALPKSATGKIQKHLL 509
           D    A  +  + + ++  +  P+ + + +++P++ TGK+ +  L
Sbjct: 474 D----AAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKEL 514

Length = 516

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 97.0 bits (242), Expect = 1e-21
 Identities = 65/242 (26%), Positives = 95/242 (39%), Gaps = 45/242 (18%)

Query: 276 GAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT 335
           GAP  PSLL    Q   R+  TYG+TE    + +   KP+     F              
Sbjct: 239 GAPAWPSLLEQARQLQLRLAPTYGMTETA--SQIATLKPD----DF-------------- 278

Query: 336 ICLDGLDVIDARTNQPVP-----ADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH 390
             L G    +  + Q +P           G I ++   +  GY      +      G F 
Sbjct: 279 --LAG----NNSSGQVLPHAQITIPANQTGNITIQAQSLALGYYPQILDS-----QGIFE 327

Query: 391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 450
           + DL       Y+ I  R    II+GGEN+   EVE  +    LV +  V+  PD  WGE
Sbjct: 328 TDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGE 387

Query: 451 SPCAFVTLKPEADELD--KGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHL 508
              A    K  +  L+  K  + + +S F   K P +W+P       LP++  GKI +  
Sbjct: 388 VVTAIYVPKDPSISLEELKTAIKDQLSPF---KQPKHWIP----VPQLPRNPQGKINRQQ 440

Query: 509 LR 510
           L+
Sbjct: 441 LQ 442

Length = 452

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 95.0 bits (236), Expect = 3e-20
 Identities = 96/373 (25%), Positives = 146/373 (39%), Gaps = 41/373 (10%)

Query: 159  YTSGTTASPKGVVVSHRGAYLMSLNGALIW-----GMN-EGAVFLWTLPMFHGNGWSYTW 212
            YTSG+T  PKGV VSH      SL   L        +  +  V  +    F G+      
Sbjct: 4701 YTSGSTGRPKGVAVSHG-----SLVNHLHATGERYELTPDDRVLQFMSFSFDGSHEGLYH 4755

Query: 213  SLAALCGTSICLRQVTA---KAVYTAIATHGVTHFCAAPVVLNAIANASPEDT-ILPLTN 268
             L    G S+ +R  +    + +Y  I  H VT     PV L  +A  +  D     L  
Sbjct: 4756 PLI--NGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDGEPPSLRV 4813

Query: 269  VVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN 328
                  A A     L +  + K   + + YG TE T           W +   +      
Sbjct: 4814 YCFGGEAVAQASYDLAWR-ALKPVYLFNGYGPTETT------VTVLLWKARDGDACGAAY 4866

Query: 329  ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF---- 384
               G   +      V+D + N P+P      GE+ + G  V +GYL+ P    E F    
Sbjct: 4867 MPIG-TPLGNRSGYVLDGQLN-PLPVGV--AGELYLGGEGVARGYLERPALTAERFVPDP 4922

Query: 385  --ANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 440
              A G   + +GDLA    D  I+   R+   +   G  I   E+E  L  HP V EA V
Sbjct: 4923 FGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEARLREHPAVREAVV 4982

Query: 441  VARPDERWGESPCAFVTLKPEA---DELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AAL 496
            +A+     G+    +V  +  A    +  + +L +++    R ++P Y VP  +VF A +
Sbjct: 4983 IAQEGAV-GKQLVGYVVPQDPALADADEAQAELRDELKAALRERLPEYMVPAHLVFLARM 5041

Query: 497  PKSATGKIQKHLL 509
            P +  GK+ +  L
Sbjct: 5042 PLTPNGKLDRKAL 5054

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 93.3 bits (232), Expect = 8e-20
 Identities = 93/367 (25%), Positives = 151/367 (41%), Gaps = 33/367 (8%)

Query: 159  YTSGTTASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 216
            YTSG+T  PKGV +SH     Y+  +   L    ++ ++ + +   F         +LA+
Sbjct: 663  YTSGSTGQPKGVAISHGALANYVCVIAERLQLAADD-SMLMVSTFAFDLGVTELFGALAS 721

Query: 217  LCGTSICL--RQVT--AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNV 272
              G ++ L        A+A    +A  GVT     P  L A+  AS      P   +V  
Sbjct: 722  --GATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVALPRPQRALVCG 779

Query: 273  NTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQG 332
              A      + + A+   G R+ + YG TE T   S               + R      
Sbjct: 780  GEALQVDLLARVRALG-PGARLINHYGPTETTVGVST---------YELSDEERDFGNVP 829

Query: 333  V-RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF------A 385
            + + +   GL ++D   N PVP     +GE+ + G+ + +GY + P    E F      A
Sbjct: 830  IGQPLANLGLYILDHYLN-PVP--VGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGA 886

Query: 386  NG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 443
            +G   + +GDLA    D  IE   R+   +   G  I   E+E  L   P V EA V+A+
Sbjct: 887  DGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQ 946

Query: 444  PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATG 502
            P +  G    A++     AD  +     +++    R  +P Y VP  ++   +LP +  G
Sbjct: 947  PGDA-GLQLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNG 1005

Query: 503  KIQKHLL 509
            K+ +  L
Sbjct: 1006 KLDRKAL 1012

Length = 3956

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 91.8 bits (228), Expect = 9e-20
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 10/159 (6%)

Query: 359 IGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGE 418
           IG + ++      GY+       E  A+GW    D+  +  + +I I  R K++I+ GG 
Sbjct: 333 IGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGI 392

Query: 419 NISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFC 478
           NI   E+E VL+ HP V E  V+  PD  WGE P A +  K  A         + +  FC
Sbjct: 393 NIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAII--KGSAT-------KQQLKSFC 443

Query: 479 RAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKEM 516
             ++ S+ +PK   F   +P + +GKI +   ++  +  
Sbjct: 444 LQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQ 482

Length = 487

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 92.1 bits (230), Expect = 1e-19
 Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 3/129 (2%)

Query: 387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 446
           G + +GD A +  D Y  I  R+ DV+   G  + + E+E  L  HP V EAAVV RPD+
Sbjct: 483 GMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDD 542

Query: 447 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 505
             G+   AFVTLK   +  D  +L +++  + R ++     P  + FA  LPK+ +GKI 
Sbjct: 543 IKGQGIYAFVTLKGGEEPSD--ELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIM 600

Query: 506 KHLLRAKAK 514
           + +LR  A+
Sbjct: 601 RRILRKIAE 609

Length = 637

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 91.2 bits (226), Expect = 5e-19
 Identities = 95/374 (25%), Positives = 136/374 (36%), Gaps = 54/374 (14%)

Query: 159  YTSGTTASPKGVVVSHRGAYLMSLNGALIW-----GMNEGAVFLWTLPM-FHGNGWSYTW 212
            YTSG+T  PKG    HR     +L+  L W     G+  G   L   P  F  + W + W
Sbjct: 662  YTSGSTGKPKGAGNRHR-----ALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFW 716

Query: 213  SLAALCGTSICL----RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTN 268
             L +  G  + +           +   I   GV      P +L A        +   L  
Sbjct: 717  PLMS--GARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVASCTSLRR 774

Query: 269  VVNVNTAGAPPPPSLLFAMSQKGF--RITHTYGLTELTGPASVCAWKPEW-DSLPFETQA 325
            +V    +G   P      +  K     + + YG TE     +      E  DS+P     
Sbjct: 775  IV---CSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIG--- 828

Query: 326  RLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF- 384
                    R I      ++DA    PVP     +GE+ + G  + +GY   P    E F 
Sbjct: 829  --------RPIANLACYILDANLE-PVPV--GVLGELYLAGRGLARGYHGRPGLTAERFV 877

Query: 385  ----ANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEA 438
                  G   + +GDLA    D  IE   R+   +   G  I   E+E  L  HP V EA
Sbjct: 878  PSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREA 937

Query: 439  AVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALP 497
            AV+A      G+    +V L+ E      G   E +     A +P Y VP   +    LP
Sbjct: 938  AVLAVD----GKQLVGYVVLESEG-----GDWREALKAHLAASLPEYMVPAQWLALERLP 988

Query: 498  KSATGKIQKHLLRA 511
             +  GK+ +  L A
Sbjct: 989  LTPNGKLDRKALPA 1002

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 89.2 bits (221), Expect = 2e-18
 Identities = 96/365 (26%), Positives = 143/365 (39%), Gaps = 33/365 (9%)

Query: 159  YTSGTTASPKGVVVSHRGAYLMSLNGA-LIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAA 216
            YTSG+T  PKGV VSH GA +     A   + ++     L  +   F G    +   L  
Sbjct: 2153 YTSGSTGLPKGVAVSH-GALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHPL-- 2209

Query: 217  LCGTSICLR---QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVN 273
            L G  + +R       + +Y  +  HGVT     PV L  +A  +  D   P   V    
Sbjct: 2210 LNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGRPPAVRVYCFG 2269

Query: 274  TAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGV 333
                P     L   + +   + + YG TE     +   WK             +    G 
Sbjct: 2270 GEAVPAASLRLAWEALRPVYLFNGYGPTEAV--VTPLLWKCRPQDPCGAAYVPIGRALGN 2327

Query: 334  RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF------ANG 387
            R        ++DA  N  +       GE+ + G  + +GYL  P    E F      A+G
Sbjct: 2328 RRAY-----ILDADLN-LLAPGM--AGELYLGGEGLARGYLNRPGLTAERFVPDPFSASG 2379

Query: 388  --WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 445
               + +GDLA    D  +E   R+   +   G  I   E+E  L  HP V EA VVA+ D
Sbjct: 2380 ERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQ-D 2438

Query: 446  ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKI 504
               G+   A+V +  +A E    +L   +     A++P+Y VP   V    LP +  GK+
Sbjct: 2439 GASGKQLVAYV-VPDDAAEDLLAELRAWL----AARLPAYMVPAHWVVLERLPLNPNGKL 2493

Query: 505  QKHLL 509
             +  L
Sbjct: 2494 DRKAL 2498

Length = 5163

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 85.4 bits (211), Expect = 1e-17
 Identities = 95/374 (25%), Positives = 154/374 (41%), Gaps = 27/374 (7%)

Query: 153 QSIALGYTSGTTASPKGVVVSHRGAYLMS---LNGALIW-GMNEGAVFLWTLPMFH-GNG 207
             +A+ +TSGTT  PK V++++R  + +        L W     G      LP  H G  
Sbjct: 170 DPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGL 229

Query: 208 WSYTWSLAALCGTSICLRQVTAKAVYTAI-ATHGVTHFCAAPVVLNA-IANASPEDTILP 265
           W   W L  L    +C+           I  T+ V   C  P +L+  ++     +  +P
Sbjct: 230 W---WILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVP 286

Query: 266 LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQA 325
              +V     G+    + +  +   G R    YGL+E TG  ++C        LP +  +
Sbjct: 287 SLRLVGY--GGSRAIAADVRFIEATGVRTAQVYGLSE-TGCTALC--------LPTDDGS 335

Query: 326 RLNARQGVRTICLDGLDVIDARTNQPVP-----ADGKTIGEIVMRGSCVMKGYLKNPKAN 380
            +    G       G+DV  A T+   P         + G + ++    M GY  NP+  
Sbjct: 336 IVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERT 395

Query: 381 EEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 440
            E   +GW ++GDL  +  D +  IK R  ++II GG NI+  EV+++      V EAA 
Sbjct: 396 AEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAAC 455

Query: 441 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKS 499
              PDE +G      V    E DE     L   ++   R +      P ++V    +P++
Sbjct: 456 YEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRT 515

Query: 500 ATGKIQKHLLRAKA 513
            +GK+ +  L A A
Sbjct: 516 QSGKVMRASLAAAA 529

Length = 540

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 85.3 bits (212), Expect = 1e-17
 Identities = 63/220 (28%), Positives = 91/220 (41%), Gaps = 33/220 (15%)

Query: 274 TAGAPPPPSLL-FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQG 332
           + GAP  P    F     G  +   YGLTE     ++        S P +T        G
Sbjct: 276 SGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTL--------SDPGDTTT---GHVG 324

Query: 333 VRTICLDG--LDVIDA--RTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NG 387
               C +   +DV +         P      GEI +RG  V KGY KNP+   EAF  +G
Sbjct: 325 PPLPCCEIKLVDVPEMGYFAKDDPPR-----GEICIRGPNVFKGYYKNPEKTAEAFDEDG 379

Query: 388 WFHSGDLAVKHPDNYIEIKDRLKDVI-ISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 446
           WFH+GD+    PD  ++I DR K++  +S GE ++  ++E +    PLV +  V     +
Sbjct: 380 WFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLK 439

Query: 447 RWGESPCAFV-----TLKPEADELDKGKLAEDVSKFCRAK 481
            +     A V      L+  A E   G    D  + C  K
Sbjct: 440 SF---LVAIVVPDEDVLEKWAAENGGGG--GDFEELCNNK 474

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 83.0 bits (206), Expect = 6e-17
 Identities = 51/163 (31%), Positives = 73/163 (44%), Gaps = 17/163 (10%)

Query: 350 QPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-----ANG--WFHSGDLAVKHPDNY 402
           QPVP      GE+ + G  +  GYL  P+   E F       G   + +GDLA   PD  
Sbjct: 316 QPVPIG--VPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGN 373

Query: 403 IEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEA 462
           IE   R+   +   G  I   E+E+ L  HP V EAAV+ R D    +   A+V  +   
Sbjct: 374 IEFLGRIDRQVKIRGFRIELGEIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGAL 433

Query: 463 DELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKI 504
           D       A ++      ++P+Y VP + V    LP +A GK+
Sbjct: 434 D-------AAELRAHLAERLPAYMVPAAFVVLDELPLTANGKV 469

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 82.4 bits (204), Expect = 8e-17
 Identities = 86/357 (24%), Positives = 137/357 (38%), Gaps = 55/357 (15%)

Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGAL-----IWGMNEGAVFLWTLPMFHGNGWSY 210
           A+ +TSG+T  PKGVV +HR     +    +     ++G+ EG   L   P F   G   
Sbjct: 89  AILFTSGSTGPPKGVVYTHR-----TFAAQIDALRSLYGIREGDRDLAAFPPFALFG--- 140

Query: 211 TWSLAALCGTSI-------CLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI 263
                AL  T++           +    +  AI   G +    +P +L  +A    E+  
Sbjct: 141 ----PALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVA-RYCEENG 195

Query: 264 LPLTNVVNVNTAGAPPPPSLLFAMSQK---GFRITHTYGLTELTGPASVCAWKPEWDSLP 320
           + L ++  V +AGAP PP LL            I   YG TE    AS+     E   + 
Sbjct: 196 IQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASI-----EGREVL 250

Query: 321 FETQARLNARQGVRTIC----LDGLDV---------IDARTNQPVPADGKTIGEIVMRGS 367
            E+     A  GV   C    + G+DV         I +  +      G+ +GEI++ G 
Sbjct: 251 AESAEPPEAGAGV---CVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGE-VGEIIVSGP 306

Query: 368 CVMKGYLKNPKANEEAFAN----GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSV 423
            V + Y   P+A + A  +     W   GDL        +    R    + + G  + +V
Sbjct: 307 HVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTV 366

Query: 424 EVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA 480
            VE+V   HP V  +A+V    +   ++P   V   P   +  K       +   +A
Sbjct: 367 PVEQVFNRHPGVRRSALVGV-GKPGTQAPVLVVEPMPPVLDRRKRLEGRLRATAKQA 422

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 82.0 bits (203), Expect = 2e-16
 Identities = 67/214 (31%), Positives = 98/214 (45%), Gaps = 34/214 (15%)

Query: 274 TAGAPPPPSLL-FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQG 332
           T  AP     L F +S     I   YG++E +GP +V           +   +   A  G
Sbjct: 325 TGAAPISRETLEFFLSLN-IPIMELYGMSETSGPHTVSN------PQNYRLLSCGKALPG 377

Query: 333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHS 391
             T           + + P  ADG  IGEI + G  V  GYL   +  EEA   +GW HS
Sbjct: 378 CET-----------KIHNP-DADG--IGEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHS 423

Query: 392 GDLAVKHPDNYIEIKDRLKDVII-SGGENISSVEVEKVLYLH-PLVLEAAVVARPDERWG 449
           GDL     D ++ I  R+K++II +GGEN+  V +E+ +    P++  A +V   D+R  
Sbjct: 424 GDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIEEAVKKELPIISNAMLVG--DKR-- 479

Query: 450 ESPCAFVTLKPEADELDKG----KLAEDVSKFCR 479
           +     +TLK E D  + G     L E+  +FCR
Sbjct: 480 KFLSMLLTLKCEVDP-ETGEPLDNLTEEAIEFCR 512

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 81.5 bits (201), Expect = 3e-16
 Identities = 74/287 (25%), Positives = 113/287 (39%), Gaps = 29/287 (10%)

Query: 159 YTSGTTASPKGVVVSHRGA--YLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 216
           YTSG+T  PKGV + HR     L         G++     L  L     +   +    A 
Sbjct: 373 YTSGSTGQPKGVRIEHRALANLLNDAGARF--GLDADDRVL-ALASLSFDASVFEIFGAL 429

Query: 217 LCGTSICLR----QVTAKAVYTAIATHGVTHFCAAPVVLNAIA-NASPEDTILPLTNVVN 271
           L G  + L     QV   A+   +   G+T     P++L  +   A   D I P   +  
Sbjct: 430 LEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQ 489

Query: 272 VNTAGAPPPPSL---LFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN 328
           + + G   P +L   L  ++    R+ + YG TE    A++       D+  F   A L 
Sbjct: 490 LLSGGEALPLALVQRLLQLAALARRLLNLYGPTE----ATL-------DAPSFPISAELE 538

Query: 329 ARQGV-RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-AN 386
           +R  + R +    L ++D    +P+P  G   GE+ + G  +  GYL  P    E F A 
Sbjct: 539 SRVPIGRPVANTQLYILDQG-LRPLP-LG-VPGELYIAGLGLALGYLNRPDLTAERFIAL 595

Query: 387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 433
             + +GDLA    D  +E   R    +   G  I   E+E  L   P
Sbjct: 596 RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642

Length = 642

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 81.1 bits (201), Expect = 3e-16
 Identities = 95/376 (25%), Positives = 153/376 (40%), Gaps = 81/376 (21%)

Query: 107 HLIVIGDESCDSKQLEYALARGAIEYEKFL---ETGDPEFAWKPPEDEWQSIALGYTSGT 163
            L+ +G            L  G       L          A   P+D     A+ +TSG+
Sbjct: 139 RLVTVGG----------RLLWGGTTLATLLRDGAAAPFPMADLAPDDM---AAILFTSGS 185

Query: 164 TASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSL--AALCG 219
           T +PKGVV +H    A + +L     +G+  G + L T P+F         +L   AL  
Sbjct: 186 TGTPKGVVYTHGMFEAQIEALRED--YGIEPGEIDLPTFPLF---------ALFGPALGM 234

Query: 220 TSI-------CLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNV 272
           TS+           V    ++ AI  +GVT+   +P +L  +     E   + L ++  V
Sbjct: 235 TSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYG-EANGIKLPSLRRV 293

Query: 273 NTAGAPPPPSLLFAMSQ---KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 329
            +AGAP P +++            I   YG TE    +S+     E   + F T+A  + 
Sbjct: 294 ISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSI-----ESREILFATRAATDN 348

Query: 330 RQGVRTIC----LDGLDV-IDARTNQPVP--------ADGKTIGEIVMRGSCVMKGYLKN 376
             G   IC    +DG++V I A ++ P+P        A G+ IGEIV+ G  V + Y   
Sbjct: 349 GAG---ICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGE-IGEIVVAGPMVTRSYYNR 404

Query: 377 PKANEEA----FANGWFH-SGDLAVKHPDNYIEIKDRL------KDVIISGGENISSVEV 425
           P+A   A         +H  GDL       Y++ + RL         + + G  + ++  
Sbjct: 405 PEATRLAKIPDGQGDVWHRMGDLG------YLDAQGRLWFCGRKAHRVETAGGTLYTIPC 458

Query: 426 EKVLYLHPLVLEAAVV 441
           E++   HP V  +A+V
Sbjct: 459 ERIFNTHPGVKRSALV 474

Length = 552

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 81.5 bits (201), Expect = 5e-16
 Identities = 82/362 (22%), Positives = 124/362 (34%), Gaps = 37/362 (10%)

Query: 159  YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAAL 217
            YTSG+T  PKGV + H             +G+  G   L      F        W L + 
Sbjct: 3203 YTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMS- 3261

Query: 218  CGTSICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAG 276
             G  + L      +     +               + +     E+     T++  +   G
Sbjct: 3262 -GARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGG 3320

Query: 277  APPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD-SLPFETQARLNARQGVRT 335
               P  L   +      + + YG TE T           W      +    +      R 
Sbjct: 3321 EALPADLQQQVFAGL-PLYNLYGPTEAT------ITVTHWQCVEEGKDAVPIGRPIANRA 3373

Query: 336  ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF------ 389
              +  LD   +    PV A    +GE+ + G  + +GY   P    E F    F      
Sbjct: 3374 CYI--LD--GSLEPVPVGA----LGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERL 3425

Query: 390  -HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 448
              +GDLA    D  IE   R+   +   G  I   E+E  L  HP V EA V+A      
Sbjct: 3426 YRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAVD---- 3481

Query: 449  GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKH 507
            G    A+V  + EA     G L E +    +A +P Y VP  ++F   +P +  GK+ + 
Sbjct: 3482 GRQLVAYVVPEDEA-----GDLREALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDRK 3536

Query: 508  LL 509
             L
Sbjct: 3537 AL 3538

Length = 5163

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 78.8 bits (195), Expect = 2e-15
 Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 35/217 (16%)

Query: 264 LPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFET 323
           L L       +  AP PP+L+    + G  I   YG+TE    +++        + P + 
Sbjct: 272 LGLDQARLAGSGAAPMPPALIAWYRKLGLPICEGYGMTENFAYSTL--------NYPGDR 323

Query: 324 QARLNARQGVRTICLDGLDV-IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 382
                 R G     + G+++ I               GEI++R   +M GY K+P+   E
Sbjct: 324 ------RIGTVGKPIPGVELKIS------------EDGEILIRSPGLMSGYYKDPEKTAE 365

Query: 383 AF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVI-ISGGENISSVEVEKVLYLHPLVLEAAV 440
           AF  +GW H+GD      D +++I  R+K++   S G+ ++   +E +L  +P V +  V
Sbjct: 366 AFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCV 425

Query: 441 VARPDERWGES-PCAFVTLKPEADELDKGKLAEDVSK 476
           V       G   P A V L   AD L++ ++ E + +
Sbjct: 426 VGS-----GLPQPVALVVLSEAADPLEREEVEESLQQ 457

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 76.7 bits (189), Expect = 7e-15
 Identities = 58/175 (33%), Positives = 80/175 (45%), Gaps = 18/175 (10%)

Query: 351 PVPADGKTIGEIVMRGSCVMKGYLKNPKANE-----EAFANG--WFHSGDLAVKHPDNYI 403
           PV   G+ +G +  +   + +GYLKN  A E     + F  G  W+ +GDL  +  D   
Sbjct: 295 PVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRW 354

Query: 404 EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV--VARPDERWGESPCAFVTLKPE 461
              DRL D      EN+S+ EV  VL   P V EA V  V  P    G + CA +TL+  
Sbjct: 355 YFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGVKVPGYD-GRAGCAAITLEES 413

Query: 462 -ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATG---KIQKHLLRAK 512
            A E +  K      K  R ++PSY VP  +      + AT    K QK +LR +
Sbjct: 414 SAVETEFTKNLLA--KLARKRLPSYAVPLFLRLT--EEVATTGNHKQQKGVLRKE 464

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 77.1 bits (190), Expect = 1e-14
 Identities = 96/383 (25%), Positives = 141/383 (36%), Gaps = 45/383 (11%)

Query: 159  YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEG-------AVFLWTLPMFHGNGWSYT 211
            YTSG+T  PKG    H      +L   L     E         V  +T   F  + W   
Sbjct: 1725 YTSGSTGRPKGAGNRHG-----ALVNRLCA-TQEAYQLSAADVVLQFTSFAFDVSVWELF 1778

Query: 212  WSLAALCGTSICLRQVTA----KAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 267
            W L  + G  + +    A    + +   I    VT     P +L  +     +    PL+
Sbjct: 1779 WPL--INGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVE-HPLS 1835

Query: 268  NVVNVNTAGAPPPPSLLFAMSQKGFR-ITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 326
                V    A    +L   + +     + + YG TE      V  W      L    + R
Sbjct: 1836 LRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETA--VDVTHWTCRRKDL----EGR 1889

Query: 327  LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN 386
             +   G     L    ++DA  N PVP      GE+ + G  + +GYL  P    E F  
Sbjct: 1890 DSVPIGQPIANL-STYILDASLN-PVPI--GVAGELYLGGVGLARGYLNRPALTAERFVA 1945

Query: 387  GWF--------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEA 438
              F         +GDLA    D  IE   R+   +   G  I   E+E  L     V EA
Sbjct: 1946 DPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREA 2005

Query: 439  AVVARPDERWGESPCAF-VTLKPE--ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-A 494
             V+A+ D   G+   A+ V   P    D+  +  L   +    +A +P Y VP  +VF A
Sbjct: 2006 VVIAQ-DGANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLA 2064

Query: 495  ALPKSATGKI-QKHLLRAKAKEM 516
             +P +  GK+ +K L    A E+
Sbjct: 2065 RMPLTPNGKLDRKALPAPDASEL 2087

Length = 3956

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 89/403 (22%), Positives = 154/403 (38%), Gaps = 75/403 (18%)

Query: 159 YTSGTTASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 216
           ++SG+T  PKGV+++H+     + ++  A    +    VFL  +P+ H  G         
Sbjct: 113 FSSGSTGEPKGVILTHKNLLTNIEAIIEA--AEITSEDVFLSWMPLTHDMGLIGFHLTPT 170

Query: 217 LCGTSIC--------------LRQVTA-KAVYTAIATHGVTHFCAAPVVLNAIANASPED 261
             G +                L + +  +A   +    G  +       L         D
Sbjct: 171 ALGINQYLMPTRLFIRRPLLWLDKASQHRATILSSPNFGYKYL------LKHFKTEKIID 224

Query: 262 TILPLTNVVNVNTAGAPP-PPSL----LFAMSQKGFR---ITHTYGLTELTGPASVCAWK 313
               L++V  +   GA P    L    L  M+  G R   +   YGL E    A++    
Sbjct: 225 --WDLSSV-RLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAE----ATLAVSF 277

Query: 314 PEWDSLPFET---------------QARLNARQGVRTI----CLDGLDV-IDARTNQPVP 353
           P+    PF+T               +        +  +     +DG ++ I     + +P
Sbjct: 278 PKPGE-PFKTVCLDRNHLKVGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVLP 336

Query: 354 ADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDV 412
              +TIG I ++G  V  GY  NP+A +++   +GW  +GDL     +  + I  R KD+
Sbjct: 337 D--RTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVITGRAKDI 393

Query: 413 IISGGENISSVEVEKVLYLHPLVLEAAVVA--RPDERWG-ESPCAFVTLKPEADELDK-- 467
           II  G+N    ++E+V      +    V A    DE+   E    FV  +   D+     
Sbjct: 394 IIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQSLDDFTPLA 453

Query: 468 GKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLR 510
            K+   V+K        + +P   +    PK+ +GKIQ++ L 
Sbjct: 454 LKIKRHVNK-KMGLNIDHVIPVRSI----PKTTSGKIQRYKLA 491

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 74.9 bits (185), Expect = 3e-14
 Identities = 57/204 (27%), Positives = 79/204 (38%), Gaps = 30/204 (14%)

Query: 314 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY 373
           P+W S+P+    +    Q           V+D       P D    GE+ + G  V  GY
Sbjct: 295 PDWRSIPY---GKPLPNQKFY--------VLDEDGR-DCP-DW-VPGELYIGGVGVALGY 340

Query: 374 LKNPKANEEAFANG-----WFHSGDLAVKHPDNYIEIKDRLKD--VIISGGENISSVEVE 426
             +P+   E F         + +GDL    PD  IE   R  D  V I  G  +   E+E
Sbjct: 341 WGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGR-ADHQVKIR-GYRVELGEIE 398

Query: 427 KVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYW 486
             L  HP V  A VV   D    ++  AFV  +  A        A  +       +P+Y 
Sbjct: 399 AALARHPGVQRAVVVVVGDGG-AKALAAFVVAEDGAAV-----DAAVLRAALAELLPAYM 452

Query: 487 VPKSVVF-AALPKSATGKIQKHLL 509
           VP   V   ALP +A GK+ +  L
Sbjct: 453 VPSRFVVLDALPLTANGKVDRKAL 476

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 74.9 bits (184), Expect = 3e-14
 Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 27/174 (15%)

Query: 294 ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVP 353
           +   YGLTE  GP ++           F  +  +    G   +  + L + +       P
Sbjct: 411 VVQGYGLTETLGPTTLG----------FPDEMCMLGTVGAPAVYNE-LRLEEVPEMGYDP 459

Query: 354 ADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVI 413
                 GEI +RG C+  GY KNP+  EE   +GWFH+GD+    P+  ++I DR K++I
Sbjct: 460 LGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLI 519

Query: 414 -ISGGENISSVEVEKVLYLHPLV-------------LEAAVVARPD--ERWGES 451
            +S GE ++   +E V   +P+V             L A VV   +   +W + 
Sbjct: 520 KLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKD 573

Length = 660

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 74.4 bits (183), Expect = 5e-14
 Identities = 98/411 (23%), Positives = 158/411 (38%), Gaps = 58/411 (14%)

Query: 131 EYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSL--NGALIW 188
           E +K  E     F    P +    + + YTSGTT + K VV S+ G +L+ L      I 
Sbjct: 233 EIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSN-GPHLVGLKYYWRSII 291

Query: 189 GMNEGAVFL------WTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKA------VYTAI 236
             +   V        W    FHG    + +   +L  T +       K       ++  I
Sbjct: 292 EKDIPTVVFSHSSIGWVS--FHG----FLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTI 345

Query: 237 ATHGVTHFCAAPVVLNAIANASPEDTILP----LTNVVNVNTAGAPPPPSLLFAMSQK-G 291
             H VTH    P  +  +    PE TI+     L+N+  +   G     S+   +  K  
Sbjct: 346 EKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLK 405

Query: 292 FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL----DVIDAR 347
            + +  YG TE  G   +  +     ++P+          GV +I +       D  +  
Sbjct: 406 IKSSRGYGQTE-IGITYLYCYGHI--NIPYNAT-------GVPSIFIKPSILSEDGKELN 455

Query: 348 TNQPVPADGKTIGEIV----MRGSCVMKGYLKNPKANEEAFAN--GWFHSGDLAVKHPDN 401
            N+        IGE+     M  S     Y KN +  ++ F+   G+++SGDL  K  + 
Sbjct: 456 VNE--------IGEVAFKLPMPPSFATTFY-KNDEKFKQLFSKFPGYYNSGDLGFKDENG 506

Query: 402 YIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPE 461
           Y  I  R  D I   G  +    +E  +  HPLVLE   +   D      P   + LK +
Sbjct: 507 YYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQD 566

Query: 462 AD--ELDKGKLAEDVSKFCRAKMPSYWV-PKSVVFAALPKSATGKIQKHLL 509
                +D  KL  +++      + S  V  K ++   LPK+ TGKI + ++
Sbjct: 567 QSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQII 617

Length = 647

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 70.6 bits (173), Expect = 8e-13
 Identities = 97/386 (25%), Positives = 164/386 (42%), Gaps = 46/386 (11%)

Query: 147 PPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA---LIWGMNEGAVFLWTLPMF 203
           PP+    ++  G T+G+T +P+  ++S  GA L +L G    +           W LP++
Sbjct: 148 PPDSGGPAVLQG-TAGSTGTPRTAILS-PGAVLSNLRGLNARVGLDAATDVGCSW-LPLY 204

Query: 204 HGNGWSYTWSLAALCGTSICLRQVTAKAV----YTAIATHGVTHFCAAP-VVLNAIANAS 258
           H  G ++  + AAL G  + L   TA +     + +  +       AAP    N I   +
Sbjct: 205 HDMGLAFLLT-AALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYA 263

Query: 259 PEDTILPLTNV-VNVNTAGAPPPPSLLF-----AMSQKGFR---ITHTYGLTE----LTG 305
              + + L  + V +N  G  P     F     AM+  GF       +YGL E    +T 
Sbjct: 264 RRVSDVDLGALRVALN--GGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTV 321

Query: 306 PASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMR 365
           P      + +  +    + AR +A  G     + G++V  +  +      G+ IGEI +R
Sbjct: 322 PVPGIGLRVDEVTTDDGSGARRHAVLGN---PIPGMEVRISPGDGAAGVAGREIGEIEIR 378

Query: 366 GSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEV 425
           G+ +M GYL     +     + WF +GDL     D  + +  R K++I   G NI   E+
Sbjct: 379 GASMMSGYLGQAPID----PDDWFPTGDLGY-LVDGGLVVCGRAKELITVAGRNIFPTEI 433

Query: 426 EKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELD--KGKLAEDVSKFCRAKMP 483
           E+V      V E AVVA         P   +  +    +    + ++ + V+  C     
Sbjct: 434 ERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDEAGARSEVVQRVASECGV--- 490

Query: 484 SYWVPKSVVFAA---LPKSATGKIQK 506
              VP  VVF A   LP++++GK+++
Sbjct: 491 ---VPSDVVFVAPGSLPRTSSGKLRR 513

Length = 525

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 116/474 (24%), Positives = 196/474 (41%), Gaps = 78/474 (16%)

Query: 64  TVVAFI-LSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE 122
            +VAF+    +  A + VD    S+  E ++M+   +  +L    +I   + S D+   +
Sbjct: 63  MLVAFLGSIKSGHAYIPVDT---SIPSERIEMIIEAAGPEL----VIHTAELSIDAVGTQ 115

Query: 123 YALARGAIEYEKFLETGDPEF-AWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMS 181
             +   +   +     G   F      +D +  I   YTSG+T +PKGV +SH    L+S
Sbjct: 116 --IITLSALEQAETSGGPVSFDHAVKGDDNYYII---YTSGSTGNPKGVQISH--DNLVS 168

Query: 182 LNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWSLAALC------GTSICL-RQVTA--K 230
               ++  + ++EG  FL   P      +S+  S+  L       GT  CL + +T   K
Sbjct: 169 FTNWMLADFPLSEGKQFLNQAP------FSFDLSVMDLYPCLASGGTLHCLDKDITNNFK 222

Query: 231 AVYTAIATHGVTHFCAAPVVLNAIANASP---EDTILPLTN------VVNVNTAGAPPPP 281
            ++  +   G+  + + P  ++ +    P   ++    LT+       + V TA A    
Sbjct: 223 LLFEELPKTGLNVWVSTPSFVD-MCLLDPNFNQENYPHLTHFLFCGEELPVKTAKA---- 277

Query: 282 SLLFAMSQKGFRITHTYGLTELTGPASVCAWKPE----WDSLPFETQARLNARQGVRTIC 337
            LL    +    I +TYG TE T   +      E    +  LP        A+  +    
Sbjct: 278 -LLERFPKA--TIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGF-----AKPDMNLFI 329

Query: 338 LDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF--ANGW--FHSGD 393
           +D          +P+P   K  GEIV+ G  V KGYL NP+   EAF    G   + +GD
Sbjct: 330 MD-------EEGEPLPEGEK--GEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGD 380

Query: 394 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR--PDERWGES 451
            A    D  +  + RL   I   G  I   ++E  L     +  A VV +   D +  E 
Sbjct: 381 -AGTITDGQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKV-EY 438

Query: 452 PCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKI 504
             A +  + E  E +  +L + + K  +  +P+Y +P+  ++   LP +A GKI
Sbjct: 439 LIAAIVPETEDFEKEF-QLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKI 491

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 91/343 (26%), Positives = 124/343 (36%), Gaps = 87/343 (25%)

Query: 145 WKPPEDEWQSIA-LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMF 203
           W PPE    +IA L YTSG+T  P GV ++H       L         EG   +  LP F
Sbjct: 172 WVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFF 231

Query: 204 HGNGWSYTWSLAALCGTSICL--------------RQVTAKAVYTAIATHGVTHFCAAP- 248
           H  G   T  L AL G  I                R++  K   T     G   F AAP 
Sbjct: 232 HDMGL-ITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTG----GT--FSAAPN 284

Query: 249 -VVLNAIANASPED--TILPLTNVVNVNTAGAPPPPSLL--F--AMSQKGFR---ITHTY 298
               +A A   P+D    L L+NV  +     P  P+ +  F  A +  G     I  +Y
Sbjct: 285 FAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSY 344

Query: 299 GLTELTGPASVCAWKPEWDSLPFETQAR--------LNARQGVRT--------------- 335
           G+ E T   S         + P + +          LNA + V                 
Sbjct: 345 GMAEATLFVS---------TTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGK 395

Query: 336 ICLDGLDVI-DARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN-------- 386
           + +    VI D  T   +P DG+ IGEI + G+ +  GY   P+     F N        
Sbjct: 396 VGVSEWAVIVDPETASELP-DGQ-IGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSE 453

Query: 387 ----------GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGEN 419
                      W  +GD  V   D  + I  R+KD++I  G N
Sbjct: 454 SHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRN 495

Length = 631

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 67.6 bits (166), Expect = 7e-12
 Identities = 48/226 (21%), Positives = 80/226 (35%), Gaps = 28/226 (12%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           D+V+++  N P    A  G    GAV+  +N +    V+A  L+   +  +IV +E    
Sbjct: 88  DVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEA 147

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
            EEA           L  P  + +                G  +                
Sbjct: 148 FEEA--------RADLARPPRLWVAG------GDTLDDPEGYEDLAAAAAGAPTT----- 188

Query: 148 PEDEWQSIALG------YTSGTTASPKGVVVSHRGAYLMSLNG-ALIWGMNEGAVFLWTL 200
                  +         YTSGTT  PK  V+SH   +L ++ G   +  +    V    L
Sbjct: 189 NPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHM-RWLKAMGGFGGLLRLTPDDVLYCCL 247

Query: 201 PMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFC 245
           P++H  G +  WS     G ++ L R+ +A   +  +  +  T F 
Sbjct: 248 PLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQ 293

Length = 600

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 67.2 bits (164), Expect = 9e-12
 Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 9/131 (6%)

Query: 387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 446
           G++ SGD   +  D Y  +  R+ DVI   G  I + EVE  L  HP   EAAVV    E
Sbjct: 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHE 572

Query: 447 RWGESPCAFVTL---KPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATG 502
             G+   AFVTL    P ++EL K  +        R ++ ++  P  + +A  LPK+ +G
Sbjct: 573 VKGQGIYAFVTLVEGVPYSEELRKSLILT-----VRNQIGAFAAPDKIHWAPGLPKTRSG 627

Query: 503 KIQKHLLRAKA 513
           KI + +LR  A
Sbjct: 628 KIMRRILRKIA 638

Length = 666

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 67.0 bits (164), Expect = 9e-12
 Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 18/182 (9%)

Query: 340 GLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP 399
            +++ +     P+P   + +G I +RG  +M GY ++ ++ +   A+GW  +GDL     
Sbjct: 395 EIEIRNE-AGMPLPE--RVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL- 450

Query: 400 DNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL--EAAVVARPDERWGESPCAFVT 457
           D Y+ I  R KD+II  G NI   ++E +    P +   +AA  +   E  GE     V 
Sbjct: 451 DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQ 509

Query: 458 LKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA---ALPKSATGKIQKHLLRAKAK 514
            +  +DE  +G+L   ++   R++   + V  +V      +LP++++GK    L RAKAK
Sbjct: 510 CR-ISDEERRGQLIHALAALVRSE---FGVEAAVELVPPHSLPRTSSGK----LSRAKAK 561

Query: 515 EM 516
           + 
Sbjct: 562 KR 563

Length = 579

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 61/242 (25%), Positives = 89/242 (36%), Gaps = 54/242 (22%)

Query: 276 GAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT 335
           G P P  +L A +  G  +  TYG++E +G    C +                       
Sbjct: 160 GGPAPAPVLDAAAAAGINVVRTYGMSETSGG---CVY----------------------- 193

Query: 336 ICLDGLDVIDARTNQPVPADGKTI----GEIVMRGSCVMKGYLKNPKANEEAFAN-GWFH 390
              DG           VP DG  +    G I + G  + KGY +NP  + + FA  GWF 
Sbjct: 194 ---DG-----------VPLDGVRVRVEDGRIALGGPTLAKGY-RNP-VDPDPFAEPGWFR 237

Query: 391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 450
           + DL     D  + +  R  D I +GG  +    VE  L  HP V + AV   PD+R G+
Sbjct: 238 TDDLGALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQ 296

Query: 451 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALPKSATGKIQKHLL 509
              A V               E +       +     P+ + V   LP+   GK+ +  L
Sbjct: 297 RVVAAVVGDGGPAP-----TLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRAL 351

Query: 510 RA 511
             
Sbjct: 352 VR 353

Length = 358

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 65.3 bits (159), Expect = 4e-11
 Identities = 98/384 (25%), Positives = 149/384 (38%), Gaps = 39/384 (10%)

Query: 159 YTSGTTASPKGVVVSHRG-AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAAL 217
           YTSGTT  PKGV     G A  ++L+   I+G+  G V      +    G SY      L
Sbjct: 239 YTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLL 298

Query: 218 CGTSICLRQVT-----AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL----PLTN 268
            G +  L +           ++ +  +GV    +AP    AI     +D        L++
Sbjct: 299 AGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAP---TAIRVLKKQDAAWLRKHDLSS 355

Query: 269 VVNVNTAGAP-PPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARL 327
           +  +  AG P   P+  +     G  +   Y  TE   P  V A  P  D  P       
Sbjct: 356 LHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWP--VLAIMPGLDLKP------- 406

Query: 328 NARQGVRTICLDG--LDVIDARTNQPVPADGKTIGEIVMRG-------SCVMKGYLKNPK 378
             + G   + + G  L V+D  T +P   + K  G + +         S V     +  K
Sbjct: 407 -VKLGSPGLPMYGYHLRVLDEATGRPCGPNEK--GVLTVVPPLPPGCLSTVWGDDARFLK 463

Query: 379 ANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEA 438
                F    + S D  ++  D Y  I  R  DVI   G  + + E+E+ +  HP V E 
Sbjct: 464 TYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEV 523

Query: 439 AVVARPDERWGESPCAFVTLKPE---ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-A 494
           AVV   DE  G+    F  LK      D  D   +   +      ++ +   P  V F A
Sbjct: 524 AVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVA 583

Query: 495 ALPKSATGKIQKHLLRAKAKEMGP 518
           ALPK+ +GK+ +  ++A A+   P
Sbjct: 584 ALPKTRSGKLLRRSIQALAEGRDP 607

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 65.0 bits (159), Expect = 7e-11
 Identities = 109/405 (26%), Positives = 154/405 (38%), Gaps = 85/405 (20%)

Query: 141  PEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG---MNEGAVFL 197
            P   +   + +  ++ L +TSG+  +PKGVV+SHR    +  N A +      +      
Sbjct: 783  PLVYFCNRDPDDPAVIL-FTSGSEGTPKGVVLSHRN---LLANRAQVAARIDFSPEDKVF 838

Query: 198  WTLPMFHGNGWSYTWSLAALCGTSICLR------QVTAKAVYTAIAT--HGVTHFCAAPV 249
              LP+FH  G +    L  L G  + L       ++  + +Y   AT   G   F     
Sbjct: 839  NALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTF----- 893

Query: 250  VLNAIAN-ASPEDTILPLTNVVNVNTAGAPP--PPSLLFAMSQKGFRITHTYGLTELTGP 306
             LN  A  A P D    L  V     AGA      +    M + G RI   YG+TE T P
Sbjct: 894  -LNGYARYAHPYD-FRSLRYVF----AGAEKVKEETRQTWMEKFGIRILEGYGVTE-TAP 946

Query: 307  ASVCAWKPEWDSLP----FETQARLNARQGVRTICLDGLDVIDARTNQPVPA--DGKTIG 360
                       + P      T  RL             L  I+ R  +PVP   +G   G
Sbjct: 947  VIAL-------NTPMHNKAGTVGRL-------------LPGIEYRL-EPVPGIDEG---G 982

Query: 361  EIVMRGSCVMKGYLK--NPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGE 418
             + +RG  VM GYL+  NP   E   A+GW+ +GD+     + +I IK R K      GE
Sbjct: 983  RLFVRGPNVMLGYLRAENPGVLEPP-ADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGE 1041

Query: 419  NISSVEVEKVL------YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAE 472
             IS   VE++        LH      A V+ PD R GE     +T   +A          
Sbjct: 1042 MISLAAVEELAAELWPDALH------AAVSIPDARKGER-IILLTTASDAT-------RA 1087

Query: 473  DVSKFCRAK-MPSYWVPKSV-VFAALPKSATGKIQKHLLRAKAKE 515
                  +A       VP  +     +P   TGKI    +   A+E
Sbjct: 1088 AFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEE 1132

Length = 1140

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 63.4 bits (155), Expect = 1e-10
 Identities = 57/224 (25%), Positives = 90/224 (40%), Gaps = 31/224 (13%)

Query: 293 RITHTYGLTELTGPASVCAWKPE----WDSLPFETQARLNARQGVRTICLDGLDVIDART 348
            I +TYG TE T   +      E    +  LP        A+            +I    
Sbjct: 288 TIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGY-----AKPDSPL-------LIIDEE 335

Query: 349 NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF--ANGW--FHSGDLAVKHPDNYIE 404
              +P   +  GEIV+ G  V KGYL NP+   EAF   +G   +H+GD      D  + 
Sbjct: 336 GTKLPDGEQ--GEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLF 392

Query: 405 IKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPE--A 462
            + R+   I   G  I   E+E+ L     V  A VV    +   +   A+V  K E   
Sbjct: 393 YQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFE 452

Query: 463 DELDKGK-LAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKI 504
            E +  K + +++ +     +  Y +P+  ++  +LP +  GKI
Sbjct: 453 REFELTKAIKKELKER----LMEYMIPRKFIYRDSLPLTPNGKI 492

Length = 503

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 63.3 bits (154), Expect = 3e-10
 Identities = 96/382 (25%), Positives = 147/382 (38%), Gaps = 53/382 (13%)

Query: 157  LGYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWSL 214
            L YTSG+T  PKGVVVSH G   M    A+I  +GM         L  +  N  + +  L
Sbjct: 2338 LIYTSGSTGKPKGVVVSH-GEIAMHCQ-AVIERFGMRADDC---ELHFYSINFDAASERL 2392

Query: 215  AA--LCGTSICLR---QVTAKAVYTAIATHGVTHFCAAPVVLNAIAN-ASPEDTILPLTN 268
                LCG  + LR   Q  A+ +   I    V+     P   + +A   + +   LP+  
Sbjct: 2393 LVPLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQWLAGQGEQLPVRM 2452

Query: 269  VVNVNTAGAPPPPSLLFAMSQKGFR---ITHTYGLTELTGPASVCAWKPEWDSLPFETQA 325
             +   T G       L  + Q  F      + YG TE                +P    A
Sbjct: 2453 CI---TGGEALTGEHLQRIRQ-AFAPQLFFNAYGPTETV-------------VMPLACLA 2495

Query: 326  RLNARQGVRTICLDGLDVIDARTN-------QPVPADGKTIGEIVMRGSCVMKGYLKNPK 378
                 +G  ++ +    V+ AR           VP      GE+ + G+ + +GY   P 
Sbjct: 2496 PEQLEEGAASVPIG--RVVGARVAYILDADLALVPQGA--TGELYVGGAGLAQGYHDRPG 2551

Query: 379  ANEEAF------ANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLY 430
               E F      A+G   + +GDL     D  +E   R+   +   G  I   E+E  L 
Sbjct: 2552 LTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLL 2611

Query: 431  LHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKS 490
             HP V EA V+A       +     V+     D+  +  L E +    + ++P Y VP  
Sbjct: 2612 EHPAVREAVVLALDTPSGKQLAGYLVSAVAGQDDEAQAALREALKAHLKQQLPDYMVPAH 2671

Query: 491  -VVFAALPKSATGKIQKHLLRA 511
             ++  +LP +A GK+ +  L A
Sbjct: 2672 LILLDSLPLTANGKLDRRALPA 2693

Length = 4334

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 62.2 bits (151), Expect = 4e-10
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 360 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVI-ISGGE 418
           GEI +RG+ +  GY K     EE   +GWFH+GD+    P+  ++I DR K++  +S GE
Sbjct: 466 GEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGE 525

Query: 419 NISSVEVEKVLYLHPLV 435
            ++   +E      PL+
Sbjct: 526 YVAVENLENTYSRCPLI 542

Length = 660

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 83/373 (22%), Positives = 127/373 (34%), Gaps = 87/373 (23%)

Query: 157 LGYTSGTTASPKGV------VVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY 210
           L Y+SGTT  PK +      +     AY  +LN        +    +   P+ H    SY
Sbjct: 106 LQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNC------EQDETPIVACPVTH----SY 155

Query: 211 TWSLAALCGTSICLRQ------VTAKAVYTAIATHGVTH---FCAAPVVLNAIANASPED 261
                 +CG    L +      +T K    A+     T      A P++L+ +    P  
Sbjct: 156 ----GLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPGT 211

Query: 262 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL-- 319
                     V T+G P P +  + + ++   +   YG +E  G  S+C        L  
Sbjct: 212 FQFH-----AVMTSGTPLPEAWFYKLRERTTYMMQQYGCSE-AGCVSICPDMKSHLDLGN 265

Query: 320 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA 379
           P      ++A                   N P         EIV+             K 
Sbjct: 266 PL-PHVSVSAGSD---------------ENAP--------EEIVV-------------KM 288

Query: 380 NEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
            ++        + DL  K     +    R+ DVI   G N+  +EVE V+   P V EA 
Sbjct: 289 GDKEI-----FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAV 343

Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPK 498
           V    D   GE   A V    E D          + ++C   +  Y VP  +     +PK
Sbjct: 344 VYRGKDPVAGERVKAKVISHEEID-------PVQLREWCIQHLAPYQVPHEIESVTEIPK 396

Query: 499 SATGKIQKHLLRA 511
           +A GK+ + LL  
Sbjct: 397 NANGKVSRKLLEL 409

Length = 414

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 11/103 (10%)

Query: 348 TNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA---NG--WFHSGDLAVKHPDNY 402
           +++P+P      GEIV+ G  V  GY KN +  +E +     G  WF++GD+   HPD  
Sbjct: 496 SDKPMPR-----GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGC 550

Query: 403 IEIKDRLKDVI-ISGGENISSVEVEKVLYLHPLVLEAAVVARP 444
           +EI DR KD++ +  GE +S  +VE  L + P V    V A P
Sbjct: 551 LEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADP 593

Length = 696

>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase

 Score = 60.8 bits (148), Expect = 1e-09
 Identities = 52/201 (25%), Positives = 82/201 (40%), Gaps = 55/201 (27%)

Query: 359 IGEIVMRGSCVMKGYLKNPKANEEAFANGWF----------------------------- 389
           +GEI +R   + +GYL  P+ N E F N WF                             
Sbjct: 621 VGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLY 680

Query: 390 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 449
            +GDL    PD  +E   R  D +   G  I   E++  L  HPLV E   + R D+   
Sbjct: 681 RTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKD-- 738

Query: 450 ESPC--AFVTLKPEADELDK---------------------GKLAEDVSKFCRAKMPSYW 486
           E P   +++  + ++DEL++                      KL +D+ ++ + K+PSY 
Sbjct: 739 EEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYA 798

Query: 487 VPKSVV-FAALPKSATGKIQK 506
           +P  +V    LP +  GK+ K
Sbjct: 799 IPTVIVPLKKLPLNPNGKVDK 819

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 59.2 bits (144), Expect = 3e-09
 Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 15/185 (8%)

Query: 341 LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHS--------G 392
           + +++  T +P   + K  G +V+ G  +  G ++    +++ F   ++           
Sbjct: 422 VKLLNEVTGEPCGPNEK--GVLVIEGP-LPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTF 478

Query: 393 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 452
           D  ++  D Y  I  R  DVI   G  + + E+E+ +  HP V E AVV   D   G+  
Sbjct: 479 DWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVA 538

Query: 453 CAFVTLK---PEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHL 508
            AFV  K     AD   +  L +++     +++ +   P  V F +ALPK+ +GK+ +  
Sbjct: 539 VAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRA 598

Query: 509 LRAKA 513
           ++A A
Sbjct: 599 IQAIA 603

Length = 629

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 58.9 bits (143), Expect = 5e-09
 Identities = 94/386 (24%), Positives = 151/386 (39%), Gaps = 74/386 (19%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIW-----GMNEGAVFLWTLPM-FHGNGWSYTW 212
           +TSG+T  PKGV+V        ++   L+W      +    V L   P  F  + W + W
Sbjct: 605 FTSGSTGRPKGVMVGQT-----AIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFW 659

Query: 213 SLAALCGTSICLRQVTAK--------AVYTAIATHGVT--HFCAAPVVLNA-IANASPED 261
               + G    L  V A+        A+    A +GVT  HF   P +L A +A+ +PE 
Sbjct: 660 PF--IAGA--KL--VMAEPEAHRDPLAMQQFFAEYGVTTTHF--VPSMLAAFVASLTPEG 711

Query: 262 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHT-----YGLTELTGPASV-CAWKPE 315
                 ++  V  +G   P  L     ++  ++T       YG TE    A+V  +W P 
Sbjct: 712 ARQSCASLRQVFCSGEALPADL----CREWQQLTGAPLHNLYGPTE----AAVDVSWYPA 763

Query: 316 WDSLPFETQARLNARQGVRTICL----DGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK 371
           +       +     R     I       GL ++DAR  +PVP      G++ + G  + +
Sbjct: 764 F------GEELAAVRGSSVPIGYPVWNTGLRILDARM-RPVPPG--VAGDLYLTGIQLAQ 814

Query: 372 GYLKNPKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVE 424
           GYL  P      F    F        +GD+A    D  +E   R  D +   G+ I   E
Sbjct: 815 GYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGE 874

Query: 425 VEKVLYLHPLVLEAAVVAR----PDERWGESPCAFVTLKPEADE-LDKGKLAEDVSKFCR 479
           +++ +   P V +A   A          G++      L  ++   LD   L   +    R
Sbjct: 875 IDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQL----R 930

Query: 480 AKMPSYWVPKSVV-FAALPKSATGKI 504
            ++P + VP  ++    LP SA GK+
Sbjct: 931 ERLPPHMVPVVLLQLDQLPLSANGKL 956

Length = 1296

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 15/143 (10%)

Query: 360 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISG-GE 418
           GEI++RGS +M GYL      E    + W+ +GDL     + Y+ I  R K++II+  G 
Sbjct: 305 GEILVRGS-LMLGYL-----GEPPATDDWWATGDLGHLDEEGYLYINGRKKNLIITSFGR 358

Query: 419 NISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFC 478
           N+S   VE  L   P + +A V        G++    V L   A  +   +L   V +  
Sbjct: 359 NVSPEWVESELQQAPAIAQAVVF-------GDAQPFLVALIVPAPNISDDQLEAAVQQ-I 410

Query: 479 RAKMPSYWVPKSVVFAALPKSAT 501
            A++P Y   K+ V    P S  
Sbjct: 411 NAQLPDYARIKTWVRLRQPFSTA 433

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 16/164 (9%)

Query: 359  IGEIVMRGSCVMKGYLKNPKANEEAF------ANG--WFHSGDLAVKHPDNYIEIKDRLK 410
            +GE+ + G+ V +GY+ +P     AF      A G   + +GDLA +  D  +E   R+ 
Sbjct: 4066 VGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRID 4125

Query: 411  DVIISGGENISSVEVEKVLYLHPLVLEAAV--VARPDERWGESPCAFVTLKPEADELDKG 468
              +   G  I   E+E  L+    V EAAV      +   G+    +  L P    L +G
Sbjct: 4126 HQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEGVN---GKHLVGY--LVPHQTVLAQG 4180

Query: 469  KLAEDVSKFCRAKMPSYWVPKS-VVFAALPKSATGKIQKHLLRA 511
             L E + +  RA++P Y VP   +    LP +A GK+ +  L A
Sbjct: 4181 ALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPA 4224

Length = 4334

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 78/330 (23%), Positives = 124/330 (37%), Gaps = 48/330 (14%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWSLAA 216
           +TSGT   PKGV ++H  A L++   A +  +   E  V +  LP FH  G++       
Sbjct: 190 FTSGTEKLPKGVPLTH--ANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPL 247

Query: 217 LCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN-ASPEDTILPLTNVVNVN 273
           L G  +      +  K +   I    VT   + PV  + I   A  +++ LP    V + 
Sbjct: 248 LSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVI- 306

Query: 274 TAGAPPPPSLLFAMSQKGF---RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNAR 330
             G       L+  + K F   ++   YG TE       C+        P  T   +N+ 
Sbjct: 307 --GGDAFKDSLYQEALKTFPHIQLRQGYGTTE-------CS--------PVITINTVNSP 349

Query: 331 QGVRT--ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG- 387
           +      + + G+DV+       VP      G ++ RG+ +  GYL            G 
Sbjct: 350 KHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGE 409

Query: 388 -WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH----------PLVL 436
            W+ +GDL        + +K RL   +  G E +S   +E +L             PLV 
Sbjct: 410 TWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLV- 468

Query: 437 EAAVVARPDERWGESPCAFVTLKPEADELD 466
              V   P E+     C F T      E++
Sbjct: 469 ---VCGLPGEK--VRLCLFTTFPTSISEVN 493

Length = 539

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 32/157 (20%)

Query: 30  VSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAE 89
           V ++  N P  + A  GA  AG +   I    +     ++   + + +++VD        
Sbjct: 36  VGILGFNSPEWFIAAVGAIFAGGIAVGIYTTNSPEACQYVAETSEANILVVDNA------ 89

Query: 90  EALKMMEANSEGKLKTPHL--IVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
              K ++     + + PHL  I+   E    K+           +++F+E G        
Sbjct: 90  ---KQLQKILAIQDQLPHLKAIIQYREPLKEKEPNL------YSWKEFMELGR-----SI 135

Query: 148 PEDEWQSI----------ALGYTSGTTASPKGVVVSH 174
           P+++  +I           L YTSGTT  PKGV++SH
Sbjct: 136 PDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSH 172

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 54.1 bits (131), Expect = 1e-07
 Identities = 56/171 (32%), Positives = 76/171 (44%), Gaps = 29/171 (16%)

Query: 356 GKTIGEIVMRGSCVMKGYLKNPKANE-----EAFANG--WFHSGDLAVKHPDNYIEIKDR 408
           G  IG I  RG     GY  +P+A+E     + F  G  WF++GDL       + +  DR
Sbjct: 404 GLLIGRITDRGP--FDGYT-DPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDR 460

Query: 409 LKDVIISGGENISSVEVEKVLYLHPLVLEAAV--VARP--DERWGESPCAFVTLKPEADE 464
           L D     GEN+++ EVE  L   P V EA V  V  P  D R G    A + L   A+ 
Sbjct: 461 LGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAG---MAAIVLADGAE- 516

Query: 465 LDKGKLAEDVSKFCRAKMPSYWVPKSVVF----AALPKSATGKIQKHLLRA 511
            D   LA  +      ++P+Y VP   +F      L  + T K +K  LR 
Sbjct: 517 FDLAALAAHL----YERLPAYAVP---LFVRLVPELETTGTFKYRKVDLRK 560

Length = 600

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 348 TNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIK 406
           T+ P P      GEI++RG  + KGY K  +   E    +GWFH+GD+     +  + I 
Sbjct: 501 TDTPEPR-----GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRII 555

Query: 407 DRLK 410
            R+K
Sbjct: 556 GRVK 559

Length = 700

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 338 LDGLDV-IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAV 396
           L GL+V +     Q +P  G  +G I +RG  V  GYL          A+GW  +GDL  
Sbjct: 366 LPGLEVRVVDEDGQVLPPRG--VGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGY 423

Query: 397 KHPDNYIEIKDRLKDVIISGGENISSVEVEK 427
              +  + +  R+KDVII  G NI   ++E+
Sbjct: 424 LTEEGEVVVCGRVKDVIIMAGRNIYPTDIER 454

Length = 545

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 65/272 (23%), Positives = 100/272 (36%), Gaps = 71/272 (26%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALI---WGM--NEGAVFLWTLPMFHG-------- 205
           +TSG+T  PK V+ +HR   ++  N A+I   W     E  V +  LP  H         
Sbjct: 171 FTSGSTGLPKAVINTHR---MLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFN 227

Query: 206 ----NGWSYTWS----LAALCGTSIC-LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN 256
               NG +        +  L   ++  LR+V+             T +   P     + +
Sbjct: 228 MVLYNGGTLYIDDGKPVPGLFEETLRNLREVSP------------TVYFNVPKGFEMLVD 275

Query: 257 ASPEDTILP---LTNVVNVNTAGAPPPPSLL-----FAMSQKGFRITHT--YGLTELTGP 306
           A   D  L       +  +  AGA  P  +       A+   G RI  T   G TE    
Sbjct: 276 ALERDAALRRRFFKRLRLLFYAGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPT 335

Query: 307 ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 366
           A+   W                 R GV  +   G ++      + VP  GK   E+ ++G
Sbjct: 336 ATFVHWP--------------TDRSGVIGLPAPGTEL------KLVPNGGKL--EVRVKG 373

Query: 367 SCVMKGYLKNPKANEEAF-ANGWFHSGDLAVK 397
             V  GY ++P+   EAF   G++  GD AV+
Sbjct: 374 PNVTPGYWRDPELTAEAFDEEGFYRIGD-AVR 404

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 360 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVI-ISGGE 418
           GEI +RG  +  GY K     +E   +GW H+GD+    P+  ++I DR K++  +S GE
Sbjct: 469 GEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGE 528

Query: 419 NISSVEVEKV 428
            ++   +E +
Sbjct: 529 YVAVENIENI 538

Length = 666

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 16/148 (10%)

Query: 372 GYLKNPKANE-----EAFANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVE 424
           GY    +  E     + F  G  +F++GDL V+   N++   DR  D     GEN+++ E
Sbjct: 362 GYAGPRELTEKKLLRDVFKKGDVYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGENVATTE 421

Query: 425 VEKVLYLHPLVLEAAV--VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKM 482
           V  +L +   + E  V  V  P    G +  A V LKP   E D  KL + V +F    +
Sbjct: 422 VADILTMVDFIQEVNVYGVTVPGHE-GRAGMAAVILKPG-TEFDLEKLYQHVREF----L 475

Query: 483 PSYWVPKSV-VFAALPKSATGKIQKHLL 509
           P+Y  P+ + +  ++  + T K QK  L
Sbjct: 476 PAYARPRFLRIQDSMEVTGTFKQQKVRL 503

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 51.7 bits (124), Expect = 9e-07
 Identities = 87/378 (23%), Positives = 147/378 (38%), Gaps = 62/378 (16%)

Query: 159  YTSGTTASPKGVVVSHRGAYLMSLNGALIW-----GMNEGAVFLWTLPM-FHGNGWSYTW 212
            YTSG+T  PKGV  +H      +L   L W      +++  V +   P+ F  + W   W
Sbjct: 1280 YTSGSTGQPKGVGNTHA-----ALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFW 1334

Query: 213  SLAALCGTSICLRQVTA--------KAVYTAIATHGVT--HFCAAPVVLNAIANASPEDT 262
             L   C      R V A        + +   +  +GVT  HF   P +L    +   E  
Sbjct: 1335 PLITGC------RLVLAGPGEHRDPQRIAELVQQYGVTTLHF--VPPLLQLFID---EPL 1383

Query: 263  ILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP 320
                T++  + + G   P  L   + Q+    ++ + YG TE     +V  W+ + +   
Sbjct: 1384 AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETA--INVTHWQCQAE--- 1438

Query: 321  FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
             + +     R     +C     V+DA  N  +P      GE+ + G+ + +GYL  P   
Sbjct: 1439 -DGERSPIGRPLGNVLC----RVLDAELN-LLPPG--VAGELCIGGAGLARGYLGRPALT 1490

Query: 381  EEAF--------ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 432
             E F            + +GD A  + D  +E   RL   +   G  +   E++  L   
Sbjct: 1491 AERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQ 1550

Query: 433  PLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV 492
            P V +AAV+ R     G     + T +   +       AE +     A++P Y VP  ++
Sbjct: 1551 PGVAQAAVLVREGAA-GAQLVGYYTGEAGQEA-----EAERLKAALAAELPEYMVPAQLI 1604

Query: 493  -FAALPKSATGKIQKHLL 509
                +P   +GK+ +  L
Sbjct: 1605 RLDQMPLGPSGKLDRRAL 1622

Length = 4334

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 51.2 bits (122), Expect = 1e-06
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 5/155 (3%)

Query: 360 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGEN 419
           G++ +RG  + KGY   P +       GW  + D      D ++  + R  D  + GG N
Sbjct: 340 GDLWVRGPAIAKGYWNRPDSPVAN--EGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVN 397

Query: 420 ISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCR 479
           +   EVE+++     V EAAVVA  +     +  AF  L   +     G +  D+ +   
Sbjct: 398 VDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAF--LVATSGATIDGSVMRDLHRGLL 455

Query: 480 AKMPSYWVP-KSVVFAALPKSATGKIQKHLLRAKA 513
            ++ ++ VP +  V   LP++  GK+ +  LR ++
Sbjct: 456 NRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS 490

Length = 705

>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009)

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 485 YWVPKSVVFA-ALPKSATGKIQKHLLRAKAKE 515
           Y VP+ V F   LPK+ +GKI + LLRA A  
Sbjct: 1   YAVPREVEFVDELPKTRSGKILRRLLRAIALG 32

This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 49.0 bits (118), Expect = 4e-06
 Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 34/170 (20%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHA-SSAVVIVDQEF 84
             D V + APNVP     QF     GA+L +IN     + + + L+ +   A++  D   
Sbjct: 67  KGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFK 126

Query: 85  FS--------LAEEALKMMEANSEGKLKT---PHL---IVIGDESCDSKQLEYALARGAI 130
            S        LA E L   E    G+L++   P L   I +GDE             G +
Sbjct: 127 DSDYVAMLYELAPE-LATCEP---GQLQSARLPELRRVIFLGDEK----------HPGML 172

Query: 131 EYEKFLETG----DPEFAWKPPE-DEWQSIALGYTSGTTASPKGVVVSHR 175
            +++ L  G    D E A +    D    I + YTSGTT  PKG  ++HR
Sbjct: 173 NFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHR 222

Length = 559

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 48.9 bits (116), Expect = 5e-06
 Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 12/199 (6%)

Query: 61  LNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ 120
           L A  V FI+SH+  ++V V+++  S   E  K    NS   +KT  ++  G  S + K+
Sbjct: 138 LGAGAVEFIISHSEVSIVFVEEKKIS---ELFKTC-PNSTEYMKT--VVSFGGVSREQKE 191

Query: 121 LEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRG---- 176
                      +++FL+ G+ +    P + +     + YTSGTT  PKGV++S+      
Sbjct: 192 EAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTL 251

Query: 177 -AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTA 235
            A ++ L  +    +    V+L  LP+ H              G +I   +   K +   
Sbjct: 252 IAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQH-GAAIGFWRGDVKLLIED 310

Query: 236 IATHGVTHFCAAPVVLNAI 254
           +     T FCA P VL+ +
Sbjct: 311 LGELKPTIFCAVPRVLDRV 329

Length = 666

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 55/225 (24%), Positives = 88/225 (39%), Gaps = 11/225 (4%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V+V  PN P  +   FG    GAV   ++       +++ L+ A + V++   +  
Sbjct: 82  AGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLA 141

Query: 86  SLAEE-----ALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGD 140
            + E+     +L+ +   S   +      +   +S  + +L    A GAI+    L    
Sbjct: 142 PVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRL---AAAGAIDLLPALRA-C 197

Query: 141 PEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRG-AYLMSLNGALIWGMNEGAVFLWT 199
                 PP       AL YT GTT  PKG   + R   Y  +   A+     E +VFL  
Sbjct: 198 TAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSF 257

Query: 200 LPMFHGNGWSYTWSLAALCG-TSICLRQVTAKAVYTAIATHGVTH 243
           LP F   G ++        G T + L +  A A   A+  + VT 
Sbjct: 258 LPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTR 302

Length = 567

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 48.3 bits (116), Expect = 7e-06
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 352 VPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVK 397
           VP  GK   E+ ++G  V  GY + P+   EAF   G++ SGD AV+
Sbjct: 406 VPVGGKL--EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGD-AVR 449

Length = 614

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 48.2 bits (115), Expect = 8e-06
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 7/82 (8%)

Query: 349 NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKD 407
           +QP P      GEI +RG  + KGY K+     E    +GW H+GD+ +  P   ++I D
Sbjct: 453 DQPYPR-----GEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIID 507

Query: 408 RLKDVI-ISGGENISSVEVEKV 428
           R K++  ++ GE I+  ++E V
Sbjct: 508 RKKNIFKLAQGEYIAPEKIENV 529

Length = 651

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 99/396 (25%), Positives = 150/396 (37%), Gaps = 74/396 (18%)

Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 207
           PED   ++ L +TSG+   PKGVV SH+           I        F+  LP+FH  G
Sbjct: 364 PEDA--ALIL-FTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFG 420

Query: 208 WSYTWSLAALCGTSICLR------QVTAKAVYTAIAT--HGVTHFCAAPVVLNAIANASP 259
            +       L G  + L       ++  + VY    T   G + F       N    A+P
Sbjct: 421 LTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLG-----NYARFANP 475

Query: 260 EDTILPLTNVVNVNTAGAPP--PPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD 317
            D    L  VV    AGA      +      + G RI   YG+TE    A V +      
Sbjct: 476 YD-FARLRYVV----AGAEKLQESTKQLWQDKFGLRILEGYGVTEC---APVVSI----- 522

Query: 318 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVP--ADGKTIGEIVMRGSCVMKGYLK 375
           ++P      + A+ G     L G   +DAR    VP    G   G + ++G  +M GYL+
Sbjct: 523 NVP------MAAKPGTVGRILPG---MDARL-LSVPGIEQG---GRLQLKGPNIMNGYLR 569

Query: 376 -------------NPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISS 422
                        N +   E    GW+ +GD+       +++I+ R K      GE +S 
Sbjct: 570 VEKPGVLEVPTAENARGEMER---GWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSL 626

Query: 423 VEVEKV-LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK 481
             VE++ L + P    A    + D   GE+   F T        D     E + ++ R  
Sbjct: 627 EMVEQLALGVSPDKQHAT-AIKSDASKGEALVLFTT--------DSELTREKLQQYAREH 677

Query: 482 -MPSYWVPKSV-VFAALPKSATGKIQKHLLRAKAKE 515
            +P   VP+ +     LP   +GK     L++   E
Sbjct: 678 GVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE 713

Length = 718

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 25/183 (13%)

Query: 343 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN----GWFHSGDLAVKH 398
           ++D ++ + V  D + +GEI   G  +  GY +NP+A+ + F       W  +GDL    
Sbjct: 383 IVDPQSLE-VLGDNR-VGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLGFLR 440

Query: 399 PDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE----AAVVARPDERWGESPCA 454
            D  + +  RLKD++I  G N+   ++EK +     V+     AA         G    A
Sbjct: 441 -DGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVNHQGEEGIGIAA 499

Query: 455 FVTLKPE----ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF---AALPKSATGKIQKH 507
            ++   +       L K  + + V++ C+        P  V+     ALPK+++GK+Q+ 
Sbjct: 500 EISRSVQKILPPQALIK-SIRQAVAEACQE------APSVVLLLNPGALPKTSSGKLQRS 552

Query: 508 LLR 510
             R
Sbjct: 553 ACR 555

Length = 4334

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 18/49 (36%), Positives = 24/49 (48%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 207
           YTSGTT  PK  V+ H   Y ++      +GM    V    LP++H  G
Sbjct: 111 YTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDCLPLYHSAG 159

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 45.7 bits (109), Expect = 5e-05
 Identities = 83/382 (21%), Positives = 137/382 (35%), Gaps = 73/382 (19%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSL-NGALIWGMNEGAVFLWTLPMFHGNGW-SYTWSLAA 216
           Y+SGTT  PK +V    G  L  L    L   +  G    +    +   GW  + W ++ 
Sbjct: 243 YSSGTTGLPKCIVHGAGGTLLQHLKEHGLHCDLRPGDRLFY----YTTTGWMMWNWLVSG 298

Query: 217 L-CGTSICLRQ-----VTAKAVYTAIATHGVTHFCAAPVVLNAIANAS-PEDTILPLTNV 269
           L  G ++ L            ++   A  G+T F  +   L+A+  A         L+++
Sbjct: 299 LLSGATLVLYDGSPLYPDPDVLWRLAAKLGITIFGTSAKYLDALEKAGIEPGRTHDLSSL 358

Query: 270 VNVNTAGAPPPPSLLFAMSQKGFRITHTY-----------GLTEL-TGPASVCAWKPEWD 317
             + + G+P PP         GF   +++           G T++           P + 
Sbjct: 359 RTILSTGSPLPPE--------GFDWVYSHVKSDVWLASISGGTDICGCFVGGNPTLPVY- 409

Query: 318 SLPFETQARLNARQGVRTICLDGLDVIDA--RTNQPVPADGKTIGEIVMRGSCV-----M 370
               E Q R           L G+ V +A     +PV  +   +GE+V    C      M
Sbjct: 410 --RGEIQCR----------GL-GMAV-EAFDEEGKPVIGE---VGELV----CTKPFPSM 448

Query: 371 KGYLKNPKANE-------EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSV 423
             Y  N            + F   W H GD     P   + I  R    +  GG  I + 
Sbjct: 449 PLYFWNDPDGSRYRDAYFDTFPGVWRH-GDWIKITPHGGVIIYGRSDATLNPGGVRIGTA 507

Query: 424 EVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP 483
           E+ +V+   P V ++ VV +  +   E    FV L+     LD   L + +    RA + 
Sbjct: 508 EIYRVVEKIPEVEDSLVVGQEVDDGDERMPLFVKLREGV-TLDDA-LVKRIRSAIRAALS 565

Query: 484 SYWVPKSVV-FAALPKSATGKI 504
              VP  ++    +P + +GK 
Sbjct: 566 PRHVPAEIIAVPDIPYTLSGKK 587

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 81/327 (24%), Positives = 121/327 (37%), Gaps = 81/327 (24%)

Query: 157 LGYTSGTTASPKGVVVSHRGA----YLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 212
           L YTSG+T  P GV ++HR        M L+  L+   N   V  W LP++H  G S   
Sbjct: 198 LQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLL-DRNTHGVS-W-LPLYHDMGLSMI- 253

Query: 213 SLAALCGTSICLRQVTA---------KAVYTAIATHGVTHFCAAP---VVLNAIANASPE 260
              A+ G    L   TA         KA+ +  +  G     AAP       A      E
Sbjct: 254 GFPAVYGGHSTLMSPTAFVRRPQRWIKAL-SEGSRTGRV-VTAAPNFAYEWAAQRGLPAE 311

Query: 261 DTILPLTNVV--------------NVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGP 306
              + L+NVV                N A AP      + + +  F+   +YG+ E T  
Sbjct: 312 GDDIDLSNVVLIIGSEPVSIDAVTTFNKAFAP------YGLPRTAFK--PSYGIAEATLF 363

Query: 307 ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVID-------ARTNQPVPADGKT- 358
            +  A   E   +  + + +L A + VR +  D  + +        AR+   V  D  T 
Sbjct: 364 VATIAPDAEPSVVYLD-REQLGAGRAVR-VAADAPNAVAHVSCGQVARSQWAVIVDPDTG 421

Query: 359 -------IGEIVMRGSCVMKGYLKNPKANEEAFAN-------------------GWFHSG 392
                  +GEI + G  + +GY   P+  E  F                      W  +G
Sbjct: 422 AELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTG 481

Query: 393 DLAVKHPDNYIEIKDRLKDVIISGGEN 419
           DL V + D  + I  R+ D+I+  G N
Sbjct: 482 DLGV-YLDGELYITGRIADLIVIDGRN 507

Length = 612

>gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 109/525 (20%), Positives = 185/525 (35%), Gaps = 72/525 (13%)

Query: 35  PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL-- 92
            +   +Y       +AG V+ S+    +A  +A  L   S A  +  Q+       AL  
Sbjct: 5   VDAVIIY---LAIVLAGCVVVSVADSFSAKEIATRL-DISGAKGVFTQDVVLRGGRALPL 60

Query: 93  --KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPE- 149
             K++EA     +  P     G+           L    + +  FL     + +    E 
Sbjct: 61  YSKVVEAAPAKAIVLP---AAGEPVA------VPLREQDLSWCDFLGVAAAQGSVGGNEY 111

Query: 150 -----DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFH 204
                       + ++SGTT  PK +  +H      + +G     +  G V  W   +  
Sbjct: 112 SPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNL-- 169

Query: 205 GNGWSY-TWSL--AALCGTSICLRQ--VTAKAVYTAIATHGVTHFCAAPVVLNAIANASP 259
             GW    W L  A L G ++ L       +     +   GVT     P ++ A  +   
Sbjct: 170 --GWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGA 227

Query: 260 EDTILP-LTNVVNVNTAG-APPPPSLLFAMSQKGFR--ITHTYGLTEL-TGPASVCAWKP 314
                   + +    + G A     +L+  S +G+   +    G TEL +G  S    +P
Sbjct: 228 FAMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQP 287

Query: 315 EWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY- 373
           +     F T     A  G R + L+   V       P P D   +GE+ +     M G  
Sbjct: 288 QAPG-AFST-----ASLGTRFVLLNDNGV-------PYPDDQPCVGEVALA--PPMLGAS 332

Query: 374 --LKNPKANEEAFANGWFHS----------GDLAVKHPDNYIEIKDRLKDVIISGGENIS 421
             L N   +++ +  G              GD+  + P  Y  ++ R  D +  GG   S
Sbjct: 333 DRLLN-ADHDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTS 391

Query: 422 SVEVEKVL-YLHPLVLEAAVVARPDERWG-ESPCAFVTLKPEADELDKGKLAEDVSKFCR 479
           SVE+E+        + E A V       G E    F+ L  E    D+ +      KF  
Sbjct: 392 SVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQE 451

Query: 480 AKM----PSYWVPKSVVFAALPKSATGKIQKHLLRAKAKEMGPVK 520
           A      P + V +  +   LP++A+ K+ + +LR + K+    +
Sbjct: 452 AIQTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKKELSGR 496

Length = 499

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 19/56 (33%), Positives = 28/56 (50%)

Query: 26 PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVD 81
          P D V+++  N P    A F     GAV   IN  L    +A IL H+ + +++VD
Sbjct: 27 PGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRGEELAHILDHSGARLIVVD 82

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 107/514 (20%), Positives = 177/514 (34%), Gaps = 71/514 (13%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI-VDQEF 84
           P D VS   PN+P    A       GA+ +S +    A  V          ++  VD   
Sbjct: 138 PGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYR 197

Query: 85  FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFL---ETGDP 141
           ++  E   +   A    +L T   +V        +     +  GA++ E F    +  + 
Sbjct: 198 YNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKID-GALDLEDFTAAAQAAEL 256

Query: 142 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNG-ALIWGMNEGAVFLWTL 200
            F   P +     + + ++SGTT  PK +V S  G  +  L    L   +  G    +  
Sbjct: 257 VFEQLPFD---HPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFY-- 311

Query: 201 PMFHGNGW-SYTWSLAALC-GTSICLRQ-----VTAKAVYTAIATHGVTHFCAAPVVLNA 253
             +   GW  + W ++ L  G ++ L            ++      G T F  +   + A
Sbjct: 312 --YTTTGWMMWNWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMA 369

Query: 254 I--ANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITH-----TYGLTELTGP 306
              A   P  T   L+ +  V + G+P PP         GFR  +        L  ++G 
Sbjct: 370 CRKAGVHPART-HDLSALQCVASTGSPLPP--------DGFRWVYDEIKADVWLASISGG 420

Query: 307 ASVCA-------WKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTI 359
             +C+         P       E QA      G+      G  V  +   +  P  G+  
Sbjct: 421 TDICSCFAGANPTLPVHIG---EIQAP-----GL------GTAV-QSWDPEGKPVTGEV- 464

Query: 360 GEIVMRGS--CVMKGYLKNP------KANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKD 411
           GE+V       +   +  +P       A  + +   W H GD     P   I I  R   
Sbjct: 465 GELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRH-GDWITLTPRGGIVIHGRSDS 523

Query: 412 VIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLA 471
            +   G  + S E+   +     V E+  + +     G     FV L P A  LD   L 
Sbjct: 524 TLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGA-TLDDA-LL 581

Query: 472 EDVSKFCRAKMPSYWVPKSVV-FAALPKSATGKI 504
           + + +  RA +    VP  ++    +P + TGK 
Sbjct: 582 DRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKR 615

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 25/182 (13%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
           P D +++++ N      A     MAG V   +   L A  + ++L H+ +  + V     
Sbjct: 30  PGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTAETIRYVLEHSDAKALFVG---- 85

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA--LARGAIEYEKFLETGDPEF 143
                 L   +A   G  +    I++   S      ++   LA               + 
Sbjct: 86  -----KLDDWDAMKAGVPEGLPTIILFPYSTLKDHYKWDDLLAATEP----------LQG 130

Query: 144 AWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL-IWGMNEGAVFLWTLPM 202
              P  ++  +I   YTSGTT  PKGV++S  GA+  +  G + I G+      L  LP+
Sbjct: 131 RPLPEPEDLATIV--YTSGTTGQPKGVMLSF-GAFAFAAQGTIEIIGLTPNDRLLSYLPL 187

Query: 203 FH 204
            H
Sbjct: 188 AH 189

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 13/111 (11%)

Query: 106 PHLIVIGDESCDS-KQLEYALARGAIEYEKFLETGDPEFA--WKPPEDEWQSIA-LGYTS 161
           P L++   +  DS  Q+E   A  A E    ++T DP  A  W+ P  +   IA L YTS
Sbjct: 117 PRLLLTVADLRDSLLQMEELAAANAPELLC-VDTLDPALAEAWQEPALQPDDIAFLQYTS 175

Query: 162 GTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGA--VFLWTLPMFHGNG 207
           G+TA PKGV VSH     +  N  LI   +G++     V +  LP++H  G
Sbjct: 176 GSTALPKGVQVSHGN---LVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMG 223

Length = 4334

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 54/202 (26%), Positives = 84/202 (41%), Gaps = 19/202 (9%)

Query: 61  LNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ 120
           L A  V FI++HA  ++  V +   S     L    +N    LKT  ++  GD S + K+
Sbjct: 136 LGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSN----LKT--IVSFGDVSSEQKE 189

Query: 121 LEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRG--AY 178
               L      +E+F   G  +    PP+ +     + YTSGTT  PKGV++++R   A 
Sbjct: 190 EAEELGVSCFSWEEFSLMGSLDCEL-PPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAE 248

Query: 179 LMSLNGALIWG---MNEGAVFLWTLPMFHGNGWSYTWSLAALC---GTSICLRQVTAKAV 232
           ++S +  L        E   +   LP+ H     Y   +   C   G SI   Q   + +
Sbjct: 249 VLSTDHLLKVTDRVATEEDSYFSYLPLAH----VYDQVIETYCISKGASIGFWQGDIRYL 304

Query: 233 YTAIATHGVTHFCAAPVVLNAI 254
              +     T FC  P V + I
Sbjct: 305 MEDVQALKPTIFCGVPRVYDRI 326

Length = 660

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 38/153 (24%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
           P DLV+V+ P       A  G  +AGA    I+    A   A IL+ A +  V+ D    
Sbjct: 36  PGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPAERRAAILARAGARAVLTDPGL- 94

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
           +  EEA                L+V  D +                     E+  P    
Sbjct: 95  AQPEEAP-------------DLLVVADDAAAA-------------------ESPAPPPPR 122

Query: 146 KPPEDEWQSIA-LGYTSGTTASPKGVVVSHRGA 177
             P+D    +A + +TSG+T  PKGV+++HR A
Sbjct: 123 VDPDD----LAYVIFTSGSTGEPKGVMITHRAA 151

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 15/121 (12%)

Query: 92  LKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE---FAWKPP 148
           L++M+    G +    +I +             L    + +   +  G           P
Sbjct: 208 LRLMK---SGGMPNTTIIYLDSLPASVDTEGCRL----VAWTDVVAKGHSAGSHHPLNIP 260

Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAY--LMSLNG---ALIWGMNEGAVFLWTLPMF 203
           E+      + YTSGTT  PKGV+ +H      +++L      LI    E   +   LP+ 
Sbjct: 261 ENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLA 320

Query: 204 H 204
           H
Sbjct: 321 H 321

Length = 700

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 26/153 (16%)

Query: 372 GYLKNPKANE-----EAFANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVE 424
           GY+ N  A       + F  G   F SGD+ V     Y+  KDR  D     GEN+S+ E
Sbjct: 328 GYV-NEGATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTE 386

Query: 425 VEKVLYLHPLV-LEAAVV--ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK 481
           VE +  L  ++ LE  VV         G +  A + + PE  ++D  + +  ++K     
Sbjct: 387 VEGI--LSNVLGLEDVVVYGVEVPGVEGRAGMAAI-VDPE-RKVDLDRFSAVLAK----S 438

Query: 482 MPSYWVPKSVVFAAL----PKSATGKIQKHLLR 510
           +P Y  P    F  L     K+ T K+QK  L+
Sbjct: 439 LPPYARP---QFIRLLPEVDKTGTFKLQKTDLQ 468

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 4/125 (3%)

Query: 392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL-YLHPLVLEAAVVARPDERWG- 449
           GD+  +    Y     R  D +  GG  +SSVE+E+V       VLE A +  P    G 
Sbjct: 594 GDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGP 653

Query: 450 ESPCAFVTLKPEAD-ELDKGKLAEDVSKFCRAKM-PSYWVPKSVVFAALPKSATGKIQKH 507
           E       LK       D  +L +  +   + K+ P + V   V+  + P++A+ K+ + 
Sbjct: 654 EQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRR 713

Query: 508 LLRAK 512
           +LR +
Sbjct: 714 VLRQQ 718

Length = 728

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 41.8 bits (99), Expect = 7e-04
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGAL--IWGMNEGAVFLWTLPMFHGNG 207
           A+ YTSGTT   KG ++SH    L+S    L   W      V +  LP+FH +G
Sbjct: 160 AILYTSGTTGRSKGAMLSHGN--LLSNALTLVDYWRFTPDDVLIHALPIFHTHG 211

Length = 504

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 41.6 bits (98), Expect = 9e-04
 Identities = 53/211 (25%), Positives = 73/211 (34%), Gaps = 43/211 (20%)

Query: 25  SPSDLVSVIAPNVPAMYEAQFGAPMAG---AVLNSINIRLNATVVAFILSHASSAVVIVD 81
            P D V+++  N PA      G    G   A LN+ NIR  + +  F    A   V++ D
Sbjct: 27  KPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNT-NIRSGSLLHCFRCCGAR--VLVAD 83

Query: 82  QEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIE--YEKFLETG 139
            E     EE L          L+   + V            + L+  +        L   
Sbjct: 84  PELLEAVEEILP--------ALRAMGVRV------------FYLSHTSPPEGVISLLAKV 123

Query: 140 DPEFAWKPPED-----EWQSIALG-YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEG 193
           D       P         +S AL  YTSGTT  PK   +SH    L       + G+   
Sbjct: 124 DAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHL-RVLQCSGMLSLCGVTAD 182

Query: 194 AVFLWTLPMFHGNGWSYTWSLAALCGTSICL 224
            V   TLP++H        S  AL G   C+
Sbjct: 183 DVVYTTLPLYH--------SSGALLGIVGCI 205

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 40.6 bits (96), Expect = 0.002
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 10/79 (12%)

Query: 132 YEKFLETG-DPEFAWKPPEDEWQSIAL-GYTSGTTASPKGVVVSHRGAYLMSLNGALIWG 189
           +E+  E G   +    PP+ E   +A   YTSGTT +PKGV+++H    +++    +   
Sbjct: 91  FEELEELGKKNKVPPTPPKPE--DLATIMYTSGTTGNPKGVMLTHGN--IVAGVAGINKI 146

Query: 190 MNEGA----VFLWTLPMFH 204
           + E      V++  LP+ H
Sbjct: 147 VPEFIGPTDVYISYLPLAH 165

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 215
           AL YTSGTT  PKG  +S R   + S   +    +         +P++HG     T +  
Sbjct: 91  ALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTCMPLYHG-----TAAFL 145

Query: 216 ALC-----GTSICL-RQVTAKAVYTAIATHGVTHF 244
            LC     G ++CL R+ +A   +  +     T  
Sbjct: 146 GLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATII 180

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 61/272 (22%), Positives = 95/272 (34%), Gaps = 71/272 (26%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGM------NEGAVFLWTLP---------MF 203
           +TSG+T  PK V+ + R   +M  N A+   +          V L  +P          F
Sbjct: 227 FTSGSTGMPKAVINTQR---MMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANF 283

Query: 204 HGNGWS----YT---WSLAALCGTSI-CLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIA 255
           +G  W     Y      L  +   +I  LR+++             T +   P     +A
Sbjct: 284 NGLLWGGGTLYIDDGKPLPGMFEETIRNLREISP------------TVYGNVPAGYAMLA 331

Query: 256 NASPEDTILP---LTNVVNVNTAGAPPPPSLL-----FAMSQKGFRI--THTYGLTELTG 305
            A  +D  L      N+  +   GA     L       A+   G RI     YG TE   
Sbjct: 332 EAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAP 391

Query: 306 PASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMR 365
             +   W  E              R G+  + L G+++      +  P   K   E+ ++
Sbjct: 392 TTTGTHWDTE--------------RVGLIGLPLPGVEL------KLAPVGDKY--EVRVK 429

Query: 366 GSCVMKGYLKNPKANEEAF-ANGWFHSGDLAV 396
           G  V  GY K+P+    AF   G++  GD A 
Sbjct: 430 GPNVTPGYHKDPELTAAAFDEEGFYRLGDAAR 461

Length = 624

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 40.2 bits (95), Expect = 0.003
 Identities = 13/18 (72%), Positives = 14/18 (77%)

Query: 159 YTSGTTASPKGVVVSHRG 176
           YTSG+T  PKGV V HRG
Sbjct: 134 YTSGSTGRPKGVAVPHRG 151

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 23/123 (18%)

Query: 61  LNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVI--GDESCDS 118
           L    V FI++HA  A +      F + +    ++   SE  + +  LIV+  G +    
Sbjct: 137 LGPDAVKFIVNHAEVAAI------FCVPQTLNTLLSCLSE--IPSVRLIVVVGGAD---- 184

Query: 119 KQLEYALARGAIE---YEKFLETG--DPEFAWKPPEDEWQSIA-LGYTSGTTASPKGVVV 172
           + L    +   +E   Y K L  G   P+  ++PP+ E   +A + YTSGTT +PKGVV+
Sbjct: 185 EPLPSLPSGTGVEIVTYSKLLAQGRSSPQ-PFRPPKPE--DVATICYTSGTTGTPKGVVL 241

Query: 173 SHR 175
           +H 
Sbjct: 242 THG 244

Length = 651

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	526
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PLN02479	567	acetate-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	100.0
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.98
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.97
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.97
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.89
PRK09188	365	serine/threonine protein kinase; Provisional	99.86
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.83
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.81
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	99.24
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	99.04
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.61
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	98.02
PLN02249	597	indole-3-acetic acid-amido synthetase	97.84
PLN02247	606	indole-3-acetic acid-amido synthetase	97.63
PLN02620	612	indole-3-acetic acid-amido synthetase	97.49
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	93.73

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-78  Score=598.29  Aligned_cols=480  Identities=36%  Similarity=0.558  Sum_probs=418.5

Q ss_pred             CccchhhhhhcccccccCccCCC--CCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFP--SSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVV   78 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g--~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v   78 (526)
                      |+|+++++.++|.+ |   .++|  +++||+|++++||++++++++|||+.+|++..|++|.+.+.++.+.++.++++++
T Consensus        48 ~~e~~~~~~r~A~~-L---~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kii  123 (537)
T KOG1176|consen   48 YSELHDRCRRLASA-L---SELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLI  123 (537)
T ss_pred             HHHHHHHHHHHHHH-H---HhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEE
Confidence            68999999999999 9   8765  8999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCccc-HHHHHhhCCCCcCCCCCCCCCCeEEE
Q 009756           79 IVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIE-YEKFLETGDPEFAWKPPEDEWQSIAL  157 (526)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~i  157 (526)
                      |++......+.++...+.         ..++.+........   ........+ +..+.....+..  ..+...+|++++
T Consensus       124 f~d~~~~~~i~~~~~~~~---------~~i~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~dd~~~i  189 (537)
T KOG1176|consen  124 FVDEDFYDKISEATSKLA---------LKIIVLTGDEGVIS---ISDLVEDLDAFEDLMPEGLPDG--IRPVSEDDTAAI  189 (537)
T ss_pred             EEcCchHHHHHHHHhhcC---------CceEEEecccCccc---cccccccccchhhccccCCCcc--cccCCCCCeEEE
Confidence            999999988888766543         44555544311000   000011122 555544444443  344678999999


Q ss_pred             EecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-cccCHHHHHHHH
Q 009756          158 GYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAI  236 (526)
Q Consensus       158 ~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i  236 (526)
                      .|||||||.||||++||++++++.......+.++..++.++.+|++|.+|+...+.+.+.+++.++. ..+++..+++.+
T Consensus       190 l~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i  269 (537)
T KOG1176|consen  190 LYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLI  269 (537)
T ss_pred             ecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHH
Confidence            9999999999999999999999988888878888899999999999999999988866666655555 567999999999


Q ss_pred             HhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcC-CeeecccccccCCCCccccccCC
Q 009756          237 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKG-FRITHTYGLTELTGPASVCAWKP  314 (526)
Q Consensus       237 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~-~~i~~~YG~tE~~~~~~~~~~~~  314 (526)
                      ++|++|+++++|..+..|++.+.....+ +++++.+.+||++++++..++++ +++ ..+.+.||+||+++.++.+...+
T Consensus       270 ~kykvt~~~~vP~~~~~l~~~p~~~~~~-l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~  348 (537)
T KOG1176|consen  270 EKYKVTHLFLVPPVLNMLAKSPIVKKYD-LSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGP  348 (537)
T ss_pred             HHhCEEEEEcChHHHHHHhcCCccCccc-CCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCc
Confidence            9999999999999999999998666666 99999999999999999999998 556 88999999999998888765443


Q ss_pred             CCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcC-CeeecCc
Q 009756          315 EWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN-GWFHSGD  393 (526)
Q Consensus       315 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-g~~~tGD  393 (526)
                      +          ...+++|.+++++  -.++++++|+.++.+  +.||||++|+.++.||+++++.|+..|.+ |||+|||
T Consensus       349 e----------~k~~svG~~~~g~--~~~v~~e~g~~l~~~--~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGD  414 (537)
T KOG1176|consen  349 E----------RKPGSVGRLLPGV--RVKVLDETGVSLGPN--QTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGD  414 (537)
T ss_pred             c----------CcccccCccccce--EEEeeCCCCCCCCCC--CceEEEEECcccchhhcCChHHHHhhcccCCccccCc
Confidence            2          3448999999976  445555569999999  78999999999999999999999999986 9999999


Q ss_pred             eeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHH
Q 009756          394 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAED  473 (526)
Q Consensus       394 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  473 (526)
                      +|++|+||++++.+|++|+||.+|.+|+|.|||++|..||.|.||+|++.+++.+||.++|+|+.+++...     .+++
T Consensus       415 iGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~l-----te~d  489 (537)
T KOG1176|consen  415 LGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTL-----TEKD  489 (537)
T ss_pred             eEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcC-----CHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999987666     7899


Q ss_pred             HHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          474 VSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       474 l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      +.+++++++++|++|..+.|++ ||+|++||++|+.||+++.+...
T Consensus       490 i~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~~~  535 (537)
T KOG1176|consen  490 IIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKLGS  535 (537)
T ss_pred             HHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhccc
Confidence            9999999999999999999998 99999999999999999987653

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=2.6e-75  Score=571.70  Aligned_cols=468  Identities=27%  Similarity=0.360  Sum_probs=401.9

Q ss_pred             CccchhhhhhcccccccCccC-CCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLL-FPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~-~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.+.++++|+. |   ++ .|+ +||||+|++|+.++.++++|||+++|++.+|+.+.++++.+..++++++++++|
T Consensus        43 y~~L~~~v~r~A~~-L---~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vi  117 (528)
T COG0365          43 YGDLRREVARLANA-L---KDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLI  117 (528)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEE
Confidence            78999999999999 8   86 678 999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHH--HHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEE
Q 009756           80 VDQEFFSLAEEAL--KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIAL  157 (526)
Q Consensus        80 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i  157 (526)
                      +.+......+...  .....      ....++.+....              ..|.+.++.......... .+.+|++++
T Consensus       118 t~d~~~~~gk~~~~~~~~~~------~~~~~iv~~r~~--------------~~~~~~~~~~~~~~~~~~-~~~~dpl~i  176 (528)
T COG0365         118 ADDGTFRNGKEIALLEDADA------VLSSVVVVPRLG--------------LWYDEAVEKASEKFEFEP-LPADDPLFL  176 (528)
T ss_pred             EecccccccccccchhHHHH------hhcceEEecccc--------------ccHHHHhhccCCCCCccc-cCCCCeEEE
Confidence            9886654332211  10000      011144443321              678888777665554433 788999999


Q ss_pred             EecCCCCCCccceeecchhHHHHHHhhH-hHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecc--c-CHHHH
Q 009756          158 GYTSGTTASPKGVVVSHRGAYLMSLNGA-LIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQ--V-TAKAV  232 (526)
Q Consensus       158 ~~TSGsTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~--~-~~~~~  232 (526)
                      +|||||||+||+|+++|..++....... ..+.+.++|++++..++.|++|.++ .+..+..|++++.+..  + +++.+
T Consensus       177 lYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~  256 (528)
T COG0365         177 LYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERL  256 (528)
T ss_pred             EeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHH
Confidence            9999999999999999998766665554 4678889999999999999999987 5555666777766632  2 48999


Q ss_pred             HHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccc
Q 009756          233 YTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCA  311 (526)
Q Consensus       233 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~  311 (526)
                      ++.++++++|.+++.|+.++.|.+.......+ +++||.+.+.||+++++.++++. .+|++|.+.||+||++++.....
T Consensus       257 ~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~d-lssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~  335 (528)
T COG0365         257 WEALEKYKVTIFGTSPTFLRRLMKLGLGEPYD-LSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGR  335 (528)
T ss_pred             HHHHHHhCCceEeeCHHHHHHHHhcCCccccc-chhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCC
Confidence            99999999999999999999999998744455 99999999999999999999998 55999999999999995554432


Q ss_pred             cCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCc--cccccccCChhhhhhhhcCCee
Q 009756          312 WKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS--CVMKGYLKNPKANEEAFANGWF  389 (526)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~--~~~~gy~~~~~~~~~~~~~g~~  389 (526)
                      .            ...+++.|.|+||+ +++|+|++ |++++.+  + |+|+++.+  +++.+||++++.+.+.+.++||
T Consensus       336 ~------------~~~~g~~g~p~pG~-~~~vvdd~-g~~~~~~--~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y  398 (528)
T COG0365         336 P------------PVKNGSSGLPLPGY-AVRRVDDE-GNPVPPG--V-GELVVRLPWPGMALTYWNDPERYKEAYFGRWY  398 (528)
T ss_pred             C------------CcCCCCCCCCCCCc-eeEEECCC-CCcCCCC--c-eEEEEeCCCchhhhhhhCCHHHHHHHHhhcee
Confidence            1            12235559999999 69999999 9999998  6 99999987  9999999999999998877799


Q ss_pred             ecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhh
Q 009756          390 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGK  469 (526)
Q Consensus       390 ~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  469 (526)
                      .|||.+++|+||+++++||.||+||+.|+++.+.|||++|.+||.|.||+|++.+++..|+.+.+||+++++....   +
T Consensus       399 ~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~---~  475 (528)
T COG0365         399 RTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN---E  475 (528)
T ss_pred             ecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChH---H
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988553   5


Q ss_pred             hHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          470 LAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       470 ~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                      ..++|++++++.+.++.+|+.+.+++ ||+|.|||++|+.||+.+.+
T Consensus       476 L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~~  522 (528)
T COG0365         476 LAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHK  522 (528)
T ss_pred             HHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHhh
Confidence            89999999988888899999999998 99999999999999999985

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=2.7e-73  Score=521.61  Aligned_cols=487  Identities=26%  Similarity=0.367  Sum_probs=421.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+|+.+.++++|++ |   ..+|+++||||++..||+.+|+.++|||.++|.+.+++||.+...+++..|++.+++++|+
T Consensus        80 f~~~~~ev~slAaG-l---l~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~  155 (596)
T KOG1177|consen   80 FSEFVSEVESLAAG-L---LSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFA  155 (596)
T ss_pred             HHHHHHHHHHHHhh-H---HhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEc
Confidence            67899999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccch-----HHHHHHHHHHhhhcc------CCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCC----
Q 009756           81 DQEF-----FSLAEEALKMMEANS------EGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW----  145 (526)
Q Consensus        81 ~~~~-----~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----  145 (526)
                      .+..     ...+.++..+..+-+      ...+.+.++|..+++.         ...+...+++++.........    
T Consensus       156 p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~---------~~~Ga~~~sev~~~~s~~~~a~l~~  226 (596)
T KOG1177|consen  156 PPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDH---------PLPGAFLLSEVLKAASKEERAKLAD  226 (596)
T ss_pred             cchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCC---------cCCCceehHHHHHhcchHHHHHHHh
Confidence            7643     344555544443211      1123456666666432         456778888888766543221    


Q ss_pred             -CCCCCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhH-HHHHHHhhcceeee
Q 009756          146 -KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSIC  223 (526)
Q Consensus       146 -~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~~  223 (526)
                       .....+||++.|.|||||||.||++.+||.++++++......+++++.+++....|++|..|+. ..+.++..|+++++
T Consensus       227 ~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vf  306 (596)
T KOG1177|consen  227 MSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVF  306 (596)
T ss_pred             hhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEe
Confidence             1235689999999999999999999999999999999999999999988999999999999965 45555566666666


Q ss_pred             e-cccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCe-eeccccc
Q 009756          224 L-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFR-ITHTYGL  300 (526)
Q Consensus       224 ~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~-i~~~YG~  300 (526)
                      . +.+++...+++|+++++|.++++|+++..|++.+.....+ ++++|..+.||+++++++.+.+. +.+.. +...||+
T Consensus       307 p~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~-~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~  385 (596)
T KOG1177|consen  307 PAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVD-LSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGL  385 (596)
T ss_pred             eCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCc-hhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeec
Confidence            4 5699999999999999999999999999999999988888 99999999999999999999998 44554 7789999


Q ss_pred             ccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhh
Q 009756          301 TELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN  380 (526)
Q Consensus       301 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~  380 (526)
                      ||+++..+....+        +.......++|..++.. +..++|.+ |..+|.+  ..|||+++|.+.+.|||++++.+
T Consensus       386 TEts~v~~~~~~~--------D~~~~~~ksVG~~m~h~-Ea~iv~~~-g~~v~~~--~~Gel~iRGY~tMl~Ywg~~~kT  453 (596)
T KOG1177|consen  386 TETSPVLFMSLLG--------DPPEERIKSVGHLMDHY-EAAIVDKD-GSEVPLG--TKGELLIRGYSTMLGYWGEEEKT  453 (596)
T ss_pred             cccCcceeeecCC--------CCHHHHHhhhhhccccc-ccccccCC-CCccccC--CCceEEEEechhheeecCCcccc
Confidence            9999877664332        23344457899999999 69999965 9999999  67999999999999999998888


Q ss_pred             hhhhc-CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEec
Q 009756          381 EEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLK  459 (526)
Q Consensus       381 ~~~~~-~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  459 (526)
                      ..... |.||+|||.|.++++|.++++||++|+|+.+|++|+|.+||+.|-+||.|.++.|++++++..||.++|+|.+.
T Consensus       454 ~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLq  533 (596)
T KOG1177|consen  454 KETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQ  533 (596)
T ss_pred             hhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEee
Confidence            87774 88999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          460 PEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       460 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      .+....   .+.++|.++|+.++..|++|+++++++ +|+|-+|||+|-++|++.+..
T Consensus       534 e~~e~~---~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFeir~~~k~~  588 (596)
T KOG1177|consen  534 EGAEGK---TTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFEIREMSKGH  588 (596)
T ss_pred             cccccc---ccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhHHHHHHHHhh
Confidence            776532   377999999999999999999999998 999999999999999999843

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5.2e-72  Score=572.55  Aligned_cols=477  Identities=35%  Similarity=0.490  Sum_probs=405.0

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+|+++|++++++++|||+++|++++|++|.++..++.++++.++++++++
T Consensus        41 y~el~~~~~~~A~~-L---~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~  116 (534)
T COG0318          41 YRELDRRANRLAAA-L---QALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLIT  116 (534)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEE
Confidence            78999999999999 9   9989999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +.+............+       ....+..........         . .++++...............+++|+++++||
T Consensus       117 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yT  179 (534)
T COG0318         117 SAEFAALLEAVAEALP-------VVLVVLLVGDADDRL---------P-ITLEALAAEGPGPDADARPVDPDDLAFLLYT  179 (534)
T ss_pred             cccchhHHHHHhccCC-------cceEEEecccccccc---------c-ccHHHHhhccCCcccccCCCCCCCEEEEEeC
Confidence            9885444444433221       122222222211100         0 3566664443333322222578999999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhC--CcCCcEEEEecccccchhhHHHHHH-Hhhcceeeeec--ccCHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWG--MNEGAVFLWTLPMFHGNGWSYTWSL-AALCGTSICLR--QVTAKAVYTA  235 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~-~~~g~~~~~~~--~~~~~~~~~~  235 (526)
                      |||||.||+|++||++++.+.......+.  ++..|++++.+|++|.+|+...+.+ +..|++.++..  .+++..++..
T Consensus       180 SGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~  259 (534)
T COG0318         180 SGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWL  259 (534)
T ss_pred             CCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHH
Confidence            99999999999999999999888888888  8999999999999999999987777 45555555555  4899999999


Q ss_pred             HHhcCceeeeccHHHHHHHHccCCCCCCCCCCc-eeeEeccCCCCCHHHHHHHh-hcC-CeeecccccccCCCCcccccc
Q 009756          236 IATHGVTHFCAAPVVLNAIANASPEDTILPLTN-VVNVNTAGAPPPPSLLFAMS-QKG-FRITHTYGLTELTGPASVCAW  312 (526)
Q Consensus       236 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~-lr~~~~~Ge~l~~~~~~~~~-~~~-~~i~~~YG~tE~~~~~~~~~~  312 (526)
                      +.++++|++.++|+++..|+......... +.. +|.++.||+++++++.+++. +++ .++++.||+||+++.++....
T Consensus       260 i~~~~~t~~~~vPt~~~~ll~~~~~~~~~-~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~  338 (534)
T COG0318         260 IEKYKVTVLSGVPTFLRELLDNPEKDDDD-LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPP  338 (534)
T ss_pred             HHHhcceEEecchHHHHHHHhCCccCccc-cccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCC
Confidence            99999999999999999999998776655 554 99999999999999999999 556 479999999999877766433


Q ss_pred             CCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcC-Ceeec
Q 009756          313 KPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN-GWFHS  391 (526)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-g~~~t  391 (526)
                      .. .        ....+++|.|+|++ +++|+|++++.+.| |  ++|||+++||+++.||+++++.+...|.+ |||+|
T Consensus       339 ~~-~--------~~~~~~~G~~~pg~-~v~Ivd~~~~~~~p-g--~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~T  405 (534)
T COG0318         339 DD-L--------LAKPGSVGRPLPGV-EVRIVDPDGGEVLP-G--EVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRT  405 (534)
T ss_pred             ch-h--------hhcCCcccccCCCc-EEEEEeCCCCccCC-C--CceEEEEECchhhhhhcCChHHHHHhhccCCeeee
Confidence            21 0        22346679999999 69999999665666 4  79999999999999999999999998886 99999


Q ss_pred             CceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhH
Q 009756          392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLA  471 (526)
Q Consensus       392 GD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  471 (526)
                      ||+|++++||++++.||.+|+|+.+|++|+|.+||.++.+||.|.+++|++.+++.+||.++|+++.+++...   ....
T Consensus       406 GDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~---~~~~  482 (534)
T COG0318         406 GDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDA---ELTA  482 (534)
T ss_pred             cceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCC---CCCH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999977420   0157


Q ss_pred             HHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          472 EDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       472 ~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                      +++.++|+++++.+++|+.+.+++ ||+|++||++|+.|++.+..
T Consensus       483 ~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         483 EELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA  527 (534)
T ss_pred             HHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence            999999999999999999999988 99999999999999999987

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.8e-69  Score=564.06  Aligned_cols=492  Identities=19%  Similarity=0.257  Sum_probs=392.5

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|+. |   +++|+++||+|++++||++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        95 y~eL~~~v~~lA~~-L---~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~  170 (647)
T PTZ00237         95 YYQLYEKVCEFSRV-L---LNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIIT  170 (647)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc---------hHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCc-hhh----hhhhhcCcccHHHHHhhCC----CC
Q 009756           81 DQE---------FFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDS-KQL----EYALARGAIEYEKFLETGD----PE  142 (526)
Q Consensus        81 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~----~~~~~~~~~~~~~~l~~~~----~~  142 (526)
                      ++.         ..+.+.++.....      ....+++.+....... ...    .....++...|++++....    ..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (647)
T PTZ00237        171 TNYGILNDEIITFTPNLKEAIELST------FKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSP  244 (647)
T ss_pred             cccceeCCceechHHHHHHHHhccc------CCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHhhhccccCCC
Confidence            752         2233333332111      0123555543211000 000    0001113355777665321    11


Q ss_pred             cCCCCCCCCCCeEEEEecCCCCCCccceeecchh-HHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhccee
Q 009756          143 FAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRG-AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTS  221 (526)
Q Consensus       143 ~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~-l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~  221 (526)
                      .......+++++++|+|||||||.||+|+++|.+ +.+........+....++++++..|++|+.+....+.++..|+++
T Consensus       245 ~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~  324 (647)
T PTZ00237        245 FYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTF  324 (647)
T ss_pred             CCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEE
Confidence            1111235678999999999999999999999998 444333334445677889999999999997766777788888888


Q ss_pred             eeecc--cC----HHHHHHHHHhcCceeeeccHHHHHHHHccCCC-----CCCCCCCceeeEeccCCCCCHHHHHHHh-h
Q 009756          222 ICLRQ--VT----AKAVYTAIATHGVTHFCAAPVVLNAIANASPE-----DTILPLTNVVNVNTAGAPPPPSLLFAMS-Q  289 (526)
Q Consensus       222 ~~~~~--~~----~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-----~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~  289 (526)
                      ++.+.  ..    +..+++.++++++|+++++|++++.|.+....     ...+ +++||.++++|+++++++.+++. .
T Consensus       325 v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~-l~~Lr~i~~~G~~l~~~~~~~~~~~  403 (647)
T PTZ00237        325 VMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYD-LSNLKEIWCGGEVIEESIPEYIENK  403 (647)
T ss_pred             EEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccC-cchheEEEecCccCCHHHHHHHHHh
Confidence            87643  12    67899999999999999999999999875422     2234 78999999999999999999988 4


Q ss_pred             cCCeeecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCc--
Q 009756          290 KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS--  367 (526)
Q Consensus       290 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~--  367 (526)
                      +++++++.||+||+++..+....          ......+++|.|.+++ +++|+|++ |++++.|  +.|||++++|  
T Consensus       404 ~g~~i~~~yG~TE~~~~~~~~~~----------~~~~~~~s~G~p~~g~-~~~i~d~~-g~~~~~g--e~GEl~v~~p~~  469 (647)
T PTZ00237        404 LKIKSSRGYGQTEIGITYLYCYG----------HINIPYNATGVPSIFI-KPSILSED-GKELNVN--EIGEVAFKLPMP  469 (647)
T ss_pred             cCCCEEeeechHHhChhhhccCC----------CCCCCCCCCccCcCCc-eEEEECCC-CCCCCCC--CceEEEEeccCC
Confidence            69999999999999865443211          0112237899999999 59999985 9999887  7899999986  


Q ss_pred             -cccccccCChhhhhhhhc--CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcC
Q 009756          368 -CVMKGYLKNPKANEEAFA--NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP  444 (526)
Q Consensus       368 -~~~~gy~~~~~~~~~~~~--~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~  444 (526)
                       +++.||+++++.+...|.  +|||+|||+|++++||+++++||+||+||++|++|+|.+||++|.+||.|.+++|++.+
T Consensus       470 p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~  549 (647)
T PTZ00237        470 PSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIY  549 (647)
T ss_pred             chhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeE
Confidence             789999999999887775  79999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeEEEEEecCCCc--hhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          445 DERWGESPCAFVTLKPEAD--ELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       445 ~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                      ++..++.++++|++.++..  ..+..+..++|+++++++|+.+++|+.+++++ ||+|++||++|+.|++++.+..
T Consensus       550 ~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~  625 (647)
T PTZ00237        550 DPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLNDSN  625 (647)
T ss_pred             cCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcCCC
Confidence            9998999999999885421  11223356788999999999999999999998 9999999999999999986543

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1.1e-67  Score=553.69  Aligned_cols=493  Identities=18%  Similarity=0.223  Sum_probs=395.7

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        86 y~eL~~~v~~lA~~-L---~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~  161 (628)
T TIGR02316        86 YRQLHREVNVFASA-L---RALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVS  161 (628)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccch---------HHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCC
Q 009756           81 DQEF---------FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDE  151 (526)
Q Consensus        81 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  151 (526)
                      ++..         ...+.++.....      .....++.++.......    ........|.+++..............+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~vi~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (628)
T TIGR02316       162 ADAGMRGGKVIPYKPLLDAAIAEAQ------HPPPHVLLVDRGLAPMR----LIPGRDVDYAALRTQHEDAQVPVEWLES  231 (628)
T ss_pred             CCccccCCcccccHHHHHHHHHhcC------CCCCEEEEEeCCCCCcC----cccCccccHHHHhhccccCCCCceecCC
Confidence            8642         222333322221      02456666654311000    0011234566665543221111122467


Q ss_pred             CCeEEEEecCCCCCCccceeecchhHHHH-HHhhHhHhCCcCCcEEEEecccccchhhH-HHHHHHhhcceeeeec----
Q 009756          152 WQSIALGYTSGTTASPKGVVVSHRGAYLM-SLNGALIWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSICLR----  225 (526)
Q Consensus       152 ~~~a~i~~TSGsTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~~~~----  225 (526)
                      +++++|+|||||||.||||+++|.+++.. .......++++++|++++..|++|..++. ..+.+++.|+++++..    
T Consensus       232 ~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~  311 (628)
T TIGR02316       232 NEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPT  311 (628)
T ss_pred             CCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCC
Confidence            89999999999999999999999997544 34445567889999999999999998865 4556677777777764    


Q ss_pred             ccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeeccccccc
Q 009756          226 QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTE  302 (526)
Q Consensus       226 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE  302 (526)
                      ..++..+++.++++++|+++++|++++.|.+....  ...+ ++++|.+++|||++++++.+++. .++..+++.||+||
T Consensus       312 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE  390 (628)
T TIGR02316       312 NPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHD-LSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTE  390 (628)
T ss_pred             CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCC-ccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccc
Confidence            24789999999999999999999999999876432  2334 88999999999999999999987 56899999999999


Q ss_pred             CCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCc---cccccccCChhh
Q 009756          303 LTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS---CVMKGYLKNPKA  379 (526)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~  379 (526)
                      ++..++......  .     ......+++|.|++++ +++|+|+++|++++.+  +.|||+++||   +.+.+|+++++.
T Consensus       391 ~~~~~~~~~~~~--~-----~~~~~~gs~G~p~~g~-~v~i~d~~~g~~~~~g--~~Gel~v~gp~~~g~~~~~~~~~~~  460 (628)
T TIGR02316       391 TGWPVLAIMPGL--D-----LKPVKLGSPGLPMYGY-HLRVLDEATGRPCGPN--EKGVLTVVPPLPPGCLSTVWGDDAR  460 (628)
T ss_pred             cCceeecCCCCC--C-----cCCCCCCCcccCcCCc-eEEEEECCCCCCCCCC--CcEEEEEecCCCccccccccCChHH
Confidence            985443321110  0     0112336889999999 6999999779999887  7899999998   567899998877


Q ss_pred             hhhhh----cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEE
Q 009756          380 NEEAF----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF  455 (526)
Q Consensus       380 ~~~~~----~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  455 (526)
                      +...+    .++||+|||+|++++||.++++||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..|+.++++
T Consensus       461 ~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~  540 (628)
T TIGR02316       461 FLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVF  540 (628)
T ss_pred             HHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEE
Confidence            66543    46799999999999999999999999999999999999999999999999999999999999989999999


Q ss_pred             EEecCCCch---hhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          456 VTLKPEADE---LDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       456 v~~~~~~~~---~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      |++.++...   .+.....++|+++++++|+.|++|+.+.+++ ||+|++||++|+.|++++.....
T Consensus       541 vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~~~~  607 (628)
T TIGR02316       541 AILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEGRDP  607 (628)
T ss_pred             EEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcCCCC
Confidence            998765431   1122367889999999999999999999988 99999999999999999875543

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1e-67  Score=555.15  Aligned_cols=491  Identities=20%  Similarity=0.234  Sum_probs=391.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.+++.++|++ |   ++.|+++||+|+|++||++++++++|||+++|++++|+++.++.+++..++++++++++|+
T Consensus       123 y~eL~~~v~~lA~~-L---~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~  198 (666)
T PLN02654        123 YSELLDRVCQLANY-L---KDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVIT  198 (666)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHH---------HHHHHHHHhhhccCCCCCCCeEEEEccCCCCc-hhhhhhhhcCcccHHHHHhhCCCCcCCCCCCC
Q 009756           81 DQEFFS---------LAEEALKMMEANSEGKLKTPHLIVIGDESCDS-KQLEYALARGAIEYEKFLETGDPEFAWKPPED  150 (526)
Q Consensus        81 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  150 (526)
                      ++....         .+.+.......  . ......++..+...... ..... .......|++++...+... ......
T Consensus       199 ~~~~~~~~k~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~  273 (666)
T PLN02654        199 CNAVKRGPKTINLKDIVDAALDESAK--N-GVSVGICLTYENQLAMKREDTKW-QEGRDVWWQDVVPNYPTKC-EVEWVD  273 (666)
T ss_pred             cCccccCCcccchHHHHHHHHHhccc--c-CCCccEEEEeccccccccccccc-ccCCcccHHHHhhcCCCCC-CceecC
Confidence            876431         12222221100  0 00122233322211000 00000 0001233555543322111 112246


Q ss_pred             CCCeEEEEecCCCCCCccceeecchhHHHH-HHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecc--
Q 009756          151 EWQSIALGYTSGTTASPKGVVVSHRGAYLM-SLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQ--  226 (526)
Q Consensus       151 ~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~--  226 (526)
                      ++|+++|+|||||||.||||+++|.+++.. .......++++++|++++..|++|+.+..+ .+..++.|+++++++.  
T Consensus       274 ~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~  353 (666)
T PLN02654        274 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAP  353 (666)
T ss_pred             CCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCC
Confidence            789999999999999999999999987644 344556678999999999999999998755 4556677887777742  


Q ss_pred             --cCHHHHHHHHHhcCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHh-hcC---Ceeeccc
Q 009756          227 --VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMS-QKG---FRITHTY  298 (526)
Q Consensus       227 --~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~---~~i~~~Y  298 (526)
                        +++..+++.|+++++|+++++|++++.|.+....  ...+ +++||.++++||+++++..+++. .+|   +++.+.|
T Consensus       354 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~y  432 (666)
T PLN02654        354 NYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHS-RKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTW  432 (666)
T ss_pred             CCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCC-hhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccc
Confidence              5789999999999999999999999999987532  2234 78999999999999999999887 455   7899999


Q ss_pred             ccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcC--ccccccccCC
Q 009756          299 GLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG--SCVMKGYLKN  376 (526)
Q Consensus       299 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~--~~~~~gy~~~  376 (526)
                      |+||+++..+..... .        .....+++|.|.+++ .++|+|++ |+.++.+  +.|||++++  |+++.||+++
T Consensus       433 g~TE~g~~~~~~~~~-~--------~~~~~gs~G~p~~g~-~v~i~d~~-g~~~~~~--~~Gel~v~~~~p~~~~gy~~~  499 (666)
T PLN02654        433 WQTETGGFMITPLPG-A--------WPQKPGSATFPFFGV-QPVIVDEK-GKEIEGE--CSGYLCVKKSWPGAFRTLYGD  499 (666)
T ss_pred             cccccCCeeeccCCC-C--------CCCCCCccCCCCCCc-eEEEECCC-CCCCCCC--CceEEEEcCCCchhhhhhcCC
Confidence            999998765432110 0        012337899999999 59999987 8888766  689999999  7899999999


Q ss_pred             hhhhhhhhc---CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeE
Q 009756          377 PKANEEAFA---NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC  453 (526)
Q Consensus       377 ~~~~~~~~~---~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~  453 (526)
                      ++.+...+.   +|||+|||++++++||.++++||.||+||++|++|+|.+||.+|.+||.|.+++|++.+++..|+.++
T Consensus       500 ~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~  579 (666)
T PLN02654        500 HERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIY  579 (666)
T ss_pred             hHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEE
Confidence            988776652   79999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          454 AFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       454 ~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      ++|+++++...  ..+..++|+++++++|+.+++|+.+.+++ ||+|++||++|+.|++.+.+.
T Consensus       580 a~Vvl~~~~~~--~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~~  641 (666)
T PLN02654        580 AFVTLVEGVPY--SEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ  641 (666)
T ss_pred             EEEEECCCCCC--CHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcCC
Confidence            99999876532  12256789999999999999999999998 999999999999999998753

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.4e-68  Score=550.85  Aligned_cols=468  Identities=24%  Similarity=0.317  Sum_probs=396.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        77 y~el~~~~~~la~~-L---~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~  152 (549)
T PRK07788         77 YAELDEQSNALARG-L---LALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVY  152 (549)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+.++.....       ....++.......       ....++..+++++.......   .+...+++++++||
T Consensus       153 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~T  215 (549)
T PRK07788        153 DDEFTDLLSALPPDLG-------RLRAWGGNPDDDE-------PSGSTDETLDDLIAGSSTAP---LPKPPKPGGIVILT  215 (549)
T ss_pred             CchhHHHHHhhccccc-------cceEEEEecCccc-------cCCcCcccHHHHhcCCCCCC---CCCCCCCCcEEEEC
Confidence            9877666554422221       1222222111110       11234567777776433221   12345678999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG  240 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  240 (526)
                      |||||.||+|.++|.++..........+++..+++++...|++|..++...+.++..|+++++...+++..+++.+++++
T Consensus       216 SGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~  295 (549)
T PRK07788        216 SGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRRRFDPEATLEDIAKHK  295 (549)
T ss_pred             CCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHhC
Confidence            99999999999999999988887777788899999999999999999887777788888887777789999999999999


Q ss_pred             ceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCCCC
Q 009756          241 VTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEWD  317 (526)
Q Consensus       241 ~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~  317 (526)
                      +|+++++|+++..|++....  .... ++++|.+++||+++++++.+++. .+++++++.||+||++..++.+...    
T Consensus       296 vt~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~----  370 (549)
T PRK07788        296 ATALVVVPVMLSRILDLGPEVLAKYD-TSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPED----  370 (549)
T ss_pred             CcEEEEHHHHHHHHHhCcccccCCCC-CCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhh----
Confidence            99999999999999987654  3344 78999999999999999999998 5688999999999997554432110    


Q ss_pred             CCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEE
Q 009756          318 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVK  397 (526)
Q Consensus       318 ~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~  397 (526)
                            ......++|.|.+++ +++|+|++ +++++.|  +.|||+++|+.++.||++++..   ...+|||+|||++++
T Consensus       371 ------~~~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~  437 (549)
T PRK07788        371 ------LAEAPGTVGRPPKGV-TVKILDEN-GNEVPRG--VVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYF  437 (549)
T ss_pred             ------hhhcCCCcccCCCCc-EEEEECCC-cCCCCCC--CeEEEEEeCCCccccccCCCcc---cccCCceecCceEEE
Confidence                  112236899999999 69999987 8899887  8999999999999999988765   345899999999999


Q ss_pred             cCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHH
Q 009756          398 HPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKF  477 (526)
Q Consensus       398 ~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  477 (526)
                      ++||.+++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|+..++...     ..++++++
T Consensus       438 ~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~-----~~~~l~~~  512 (549)
T PRK07788        438 DEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAAL-----DEDAIKDY  512 (549)
T ss_pred             cCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCC-----CHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999889999999998876443     56889999


Q ss_pred             HHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHH
Q 009756          478 CRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK  512 (526)
Q Consensus       478 l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~  512 (526)
                      ++++|+.|++|..+.+++ ||+|++||++|+.|+++
T Consensus       513 ~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~  548 (549)
T PRK07788        513 VRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM  548 (549)
T ss_pred             HHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence            999999999999999888 99999999999999753

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=3.6e-67  Score=544.55  Aligned_cols=506  Identities=47%  Similarity=0.816  Sum_probs=400.3

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|+
T Consensus        42 y~eL~~~~~~~a~~-L---~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~  117 (579)
T PLN03102         42 WPQTYDRCCRLAAS-L---ISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFV  117 (579)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEE
Confidence            78999999999999 9   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCC----CCCCCCCCeEE
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW----KPPEDEWQSIA  156 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~a~  156 (526)
                      +++....+.++....+... .. ....++.++......     .......++.++++........    .....++++++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  190 (579)
T PLN03102        118 DRSFEPLAREVLHLLSSED-SN-LNLPVIFIHEIDFPK-----RPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPIS  190 (579)
T ss_pred             ChhhHHHHHHHHhhccccc-cc-cCceEEEeccccccc-----CCcccccCHHHHHhccCCCCcccccccccCCCCCcEE
Confidence            9887766665544332100 00 112345554321100     0011234566665543322111    01235689999


Q ss_pred             EEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHH
Q 009756          157 LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAI  236 (526)
Q Consensus       157 i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i  236 (526)
                      |+|||||||.||+|+++|.++..........+.+...+++++.+|++|..++...+.++..|++++++..+++..+++.|
T Consensus       191 il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i  270 (579)
T PLN03102        191 LNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNI  270 (579)
T ss_pred             EEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHH
Confidence            99999999999999999999766555554555677788999999999999988777788889999988888899999999


Q ss_pred             HhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCC
Q 009756          237 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW  316 (526)
Q Consensus       237 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~  316 (526)
                      +++++|+++++|+++..|.+........ .++++.+++||+++++.+.+++.++++++++.||+||+++.++.+.....+
T Consensus       271 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~  349 (579)
T PLN03102        271 EMHNVTHMCCVPTVFNILLKGNSLDLSP-RSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEW  349 (579)
T ss_pred             HHcCCeEEEeChHHHHHHHhCcccccCC-cccceEEEECCCCCCHHHHHHHHHcCCeEEeecCccccCcccccccccccc
Confidence            9999999999999999999875433333 567888999999999999999988899999999999998755543322222


Q ss_pred             CCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeE
Q 009756          317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAV  396 (526)
Q Consensus       317 ~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~  396 (526)
                      ...+...........|.+.++...++++|.+++++++.++++.|||+++|+.++.||+++++.+...|.+|||+|||+|+
T Consensus       350 ~~~~~~~~~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TGDlg~  429 (579)
T PLN03102        350 NRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGDVGV  429 (579)
T ss_pred             ccCCcccccccccCCCcccccccceEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceecCceEE
Confidence            11111110011122333333332577888777888876544689999999999999999999999999999999999999


Q ss_pred             EcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhh-----hhhhH
Q 009756          397 KHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELD-----KGKLA  471 (526)
Q Consensus       397 ~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~  471 (526)
                      +++||++++.||.+|+|+.+|.+|+|.+||.++.++|.|.+++|++.+++..++.++++|++.++....+     .....
T Consensus       430 ~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~  509 (579)
T PLN03102        430 IHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRE  509 (579)
T ss_pred             EcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccccccccccccccH
Confidence            9999999999999999999999999999999999999999999999999988899999999876543210     00135


Q ss_pred             HHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          472 EDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       472 ~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      .+++++++++|+.|++|..+.+++ ||+|++||++|++|++++.+...
T Consensus       510 ~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~~~~  557 (579)
T PLN03102        510 RDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKGLVV  557 (579)
T ss_pred             HHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHHHHHHHHhhh
Confidence            689999999999999999999888 99999999999999999876443

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=2.3e-66  Score=538.40  Aligned_cols=517  Identities=74%  Similarity=1.233  Sum_probs=414.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|.+ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        48 y~eL~~~~~~lA~~-L---~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~  123 (567)
T PLN02479         48 WAQTYQRCRRLASA-L---AKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMV  123 (567)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++......+...............+.++.++...............+...|.++++...+........+.+++++++||
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yT  203 (567)
T PLN02479        124 DQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYT  203 (567)
T ss_pred             chhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHHHHhccccccccCCCCCcccceEEEEC
Confidence            98877666555443221000000123455554322111111111223455677776654332221122344577889999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG  240 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  240 (526)
                      |||||.||+|.+||.++..........+++..++++++..|++|.+++...+...+.++..+.+..+++..+++.+++++
T Consensus       204 SGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~  283 (567)
T PLN02479        204 SGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYG  283 (567)
T ss_pred             CCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcC
Confidence            99999999999999998776665666678889999999999999999877666666677777777889999999999999


Q ss_pred             ceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCCCCC
Q 009756          241 VTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLP  320 (526)
Q Consensus       241 ~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~  320 (526)
                      +|+++++|.++..|...........+++++.++++|+++++++.+++.+.++++++.||+||+++.++.+...+.|...+
T Consensus       284 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  363 (567)
T PLN02479        284 VTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLP  363 (567)
T ss_pred             CeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHhcCCceecccccccccccccceeccccccccC
Confidence            99999999999999876543332127889999999999999999999877899999999999976655544333333222


Q ss_pred             cccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCC
Q 009756          321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD  400 (526)
Q Consensus       321 ~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~  400 (526)
                      ...........|.+.++...++|+|++++.+++.++++.|||+++|++++.||+++++.+...|.+|||+|||+++++++
T Consensus       364 ~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~~~~  443 (567)
T PLN02479        364 PEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHPD  443 (567)
T ss_pred             cccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEEcCC
Confidence            21112222456778888755889997778888876556899999999999999999999999999999999999999999


Q ss_pred             ceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHh
Q 009756          401 NYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA  480 (526)
Q Consensus       401 g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~  480 (526)
                      |.++++||.+|+|+.+|.+|+|.+||.++.++|.|.+++|++.++...++.+++++++.++....+.....+++.+++++
T Consensus       444 g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~  523 (567)
T PLN02479        444 GYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRE  523 (567)
T ss_pred             ccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999888888999999988664322223356789999999


Q ss_pred             cCCCccCCcEEEeccccCCCCccccHHHHHHHHHhcCCccc
Q 009756          481 KMPSYWVPKSVVFAALPKSATGKIQKHLLRAKAKEMGPVKM  521 (526)
Q Consensus       481 ~l~~~~~p~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~~~~  521 (526)
                      +|+.|++|+.+.+.+||+|++||++|+.|++++.++++...
T Consensus       524 ~l~~~~~P~~~~~~~iP~t~~gKv~r~~L~~~~~~~~~~~~  564 (567)
T PLN02479        524 RLPAYWVPKSVVFGPLPKTATGKIQKHVLRAKAKEMGPVKK  564 (567)
T ss_pred             hcccccCCceEEeccCCCCCccCeeHHHHHHHHHhhCCccc
Confidence            99999999998885599999999999999999888776543

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=3.4e-67  Score=551.77  Aligned_cols=487  Identities=20%  Similarity=0.242  Sum_probs=384.0

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   +++|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        81 y~el~~~v~~lA~~-L---~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~  156 (651)
T PLN02736         81 YGEAGTARTAIGSG-L---VQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFC  156 (651)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+.......+       ..+.++.++.........+........+|+++++.............++|+++|+||
T Consensus       157 ~~~~~~~~~~~~~~~~-------~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyT  229 (651)
T PLN02736        157 VPQTLNTLLSCLSEIP-------SVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYT  229 (651)
T ss_pred             CHHHHHHHHHHhhcCC-------CceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEc
Confidence            9887766666554444       456666664321100000000112345777777654322211223467899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG  240 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  240 (526)
                      |||||.||||++||+++...+......+++.++|++++.+|++|.+++...+.++..|+++++.. .++..+++.+++++
T Consensus       230 SGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~-~~~~~~~~~i~~~~  308 (651)
T PLN02736        230 SGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQ-GDNLKLMDDLAALR  308 (651)
T ss_pred             CCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHhC
Confidence            99999999999999999998888887888899999999999999999887777777777766654 47889999999999


Q ss_pred             ceeeeccHHHHHHHHccCC----------------------------CCCCC------------CC-CceeeEeccCCCC
Q 009756          241 VTHFCAAPVVLNAIANASP----------------------------EDTIL------------PL-TNVVNVNTAGAPP  279 (526)
Q Consensus       241 ~t~l~~~P~~~~~l~~~~~----------------------------~~~~~------------~l-~~lr~~~~~Ge~l  279 (526)
                      ||+++++|.+++.+.....                            .....            .+ +++|.+++||+++
T Consensus       309 ~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l  388 (651)
T PLN02736        309 PTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPL  388 (651)
T ss_pred             CcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCC
Confidence            9999999999988765310                            00000            01 4899999999999


Q ss_pred             CHHHHHHHh-hcCCeeecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCc---cCCC
Q 009756          280 PPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQP---VPAD  355 (526)
Q Consensus       280 ~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~---~~~~  355 (526)
                      ++++.+++. .+++++++.||+||+++.++.....           ....+++|.|+|++ +++|+|.+++..   ...+
T Consensus       389 ~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~pg~-~v~i~d~~~~~~~~~~~~~  456 (651)
T PLN02736        389 SPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEG-----------DNLSGHVGSPNPAC-EVKLVDVPEMNYTSEDQPY  456 (651)
T ss_pred             CHHHHHHHHHHhCCCeEEEechHHhchheeccCCC-----------CCCCCccCCccCce-EEEEEEccccCcccCCCCC
Confidence            999999998 5689999999999997655543211           12237899999999 699998543321   1111


Q ss_pred             CCceEEEEEcCccccccccCChhhhhhhhc-CCeeecCceeEEcCCceEEEeccccceeee-CCeeechHHHHHHHHcCC
Q 009756          356 GKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIIS-GGENISSVEVEKVLYLHP  433 (526)
Q Consensus       356 ~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~-~G~~v~~~~ie~~l~~~~  433 (526)
                        +.|||+++|++++.||+++++.+...|. +|||+|||+|++++||.++++||.+|+||+ +|++|+|.+||.+|.++|
T Consensus       457 --~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p  534 (651)
T PLN02736        457 --PRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCK  534 (651)
T ss_pred             --CCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCC
Confidence              3699999999999999999999999985 899999999999999999999999999995 799999999999999999


Q ss_pred             CeeeeEEEEcCCCCCCceeEEEEEecCCC----------chhhh------hhhHHHHHHHHH-----hcCCCccCCcEEE
Q 009756          434 LVLEAAVVARPDERWGESPCAFVTLKPEA----------DELDK------GKLAEDVSKFCR-----AKMPSYWVPKSVV  492 (526)
Q Consensus       434 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~~~~~------~~~~~~l~~~l~-----~~l~~~~~p~~~~  492 (526)
                      .|.+|+|++.   ..++.++|+|+++++.          +..+.      .+..+.+.+.+.     +.|+.|.+|+.+.
T Consensus       535 ~V~~a~V~g~---~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~  611 (651)
T PLN02736        535 FVAQCFVYGD---SLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVT  611 (651)
T ss_pred             CeeEEEEEec---CCCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEE
Confidence            9999999983   2467899999987531          10000      001112222222     2699999999999


Q ss_pred             ecc-cc------CCCCccccHHHHHHHHHhc
Q 009756          493 FAA-LP------KSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       493 ~~~-lP------~t~~GKv~r~~l~~~~~~~  516 (526)
                      +++ .|      +|++||++|+.+++.+.+.
T Consensus       612 ~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~  642 (651)
T PLN02736        612 LVPEPFTVENGLLTPTFKVKRPQAKAYFAKA  642 (651)
T ss_pred             EeCCCCcCCCCcCChhhhhhHHHHHHHHHHH
Confidence            887 54      7999999999999998764

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=3.4e-66  Score=543.31  Aligned_cols=485  Identities=23%  Similarity=0.326  Sum_probs=393.7

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.+++.++|++ |   +++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        91 y~eL~~~v~~lA~~-L---~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~  166 (625)
T TIGR02188        91 YRELHREVCRFANV-L---KSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVIT  166 (625)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchH---------HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCC
Q 009756           81 DQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDE  151 (526)
Q Consensus        81 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  151 (526)
                      ++...         ..+.+.+...+.      ..+.++.++.......    ........+.+++........ .....+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~  235 (625)
T TIGR02188       167 ADEGLRGGKVIPLKAIVDEALEKCPV------SVEHVLVVRRTGNPVP----WVEGRDVWWHDLMAKASAYCE-PEPMDS  235 (625)
T ss_pred             cCccccCCcccchHHHHHHHHHhCCC------CccEEEEEcCCCCCcC----ccccccccHHHHHhhcCCCCC-ceecCC
Confidence            87532         233333332210      1345665543221100    001122456666654332221 123567


Q ss_pred             CCeEEEEecCCCCCCccceeecchhHHHHHHh-hHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecc---
Q 009756          152 WQSIALGYTSGTTASPKGVVVSHRGAYLMSLN-GALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQ---  226 (526)
Q Consensus       152 ~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~---  226 (526)
                      +++++|+|||||||.||+|+++|.+++..... ....+++.++|++++..|++|..+..+ .+.++..|+++++...   
T Consensus       236 ~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~  315 (625)
T TIGR02188       236 EDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPT  315 (625)
T ss_pred             CCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCC
Confidence            89999999999999999999999997655443 334567889999999999999988654 5556677777777642   


Q ss_pred             -cCHHHHHHHHHhcCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHhh-c---CCeeecccc
Q 009756          227 -VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K---GFRITHTYG  299 (526)
Q Consensus       227 -~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~---~~~i~~~YG  299 (526)
                       .++..+++.++++++|+++++|++++.|.+....  .... ++++|.++++|+++++++.+++.+ +   ++++++.||
T Consensus       316 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG  394 (625)
T TIGR02188       316 YPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHD-LSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWW  394 (625)
T ss_pred             CCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCC-ccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEeccc
Confidence             4789999999999999999999999999887543  2233 789999999999999999998874 3   478999999


Q ss_pred             cccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccC-CCCCceEEEEEcC--ccccccccCC
Q 009756          300 LTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVP-ADGKTIGEIVMRG--SCVMKGYLKN  376 (526)
Q Consensus       300 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~-~~~~~~Gel~v~~--~~~~~gy~~~  376 (526)
                      +||+++.++.....         ......+++|.|++++ +++|+|++ |++++ .+  +.|||+++|  |+++.||+++
T Consensus       395 ~TE~~~~~~~~~~~---------~~~~~~~~~G~p~~g~-~~~i~d~~-g~~~~~~g--~~GeL~v~~p~p~~~~gy~~~  461 (625)
T TIGR02188       395 QTETGGIMITPLPG---------ATPTKPGSATLPFFGI-EPAVVDEE-GNPVEGPG--EGGYLVIKQPWPGMLRTIYGD  461 (625)
T ss_pred             ccccCCceeecCCC---------CCCcCCCcccCCcCCc-eEEEECCC-CCCCCCCC--CeEEEEEccCCCcccccccCC
Confidence            99998765432211         0112236899999999 69999965 88888 66  799999999  6899999999


Q ss_pred             hhhhhhhh---cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeE
Q 009756          377 PKANEEAF---ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC  453 (526)
Q Consensus       377 ~~~~~~~~---~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~  453 (526)
                      ++.+...+   .+|||+|||++++++||.++++||.||+||++|++|+|.+||.+|.++|.|.+++|++.+++..|+.++
T Consensus       462 ~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~  541 (625)
T TIGR02188       462 HERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIY  541 (625)
T ss_pred             hHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEE
Confidence            98777665   378999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             EEEEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          454 AFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       454 ~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      ++|++.++....  ....++|+++++++|+.+++|+.+.+++ ||+|++||++|+.|++++...
T Consensus       542 a~vv~~~~~~~~--~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~  603 (625)
T TIGR02188       542 AFVTLKDGYEPD--DELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE  603 (625)
T ss_pred             EEEEeCCCCCCC--HHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence            999998765431  1256889999999999999999999888 999999999999999998754

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=2.5e-66  Score=543.75  Aligned_cols=485  Identities=18%  Similarity=0.187  Sum_probs=384.5

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.+++.++|++ |   +++|+++||+|++++||++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus       117 y~eL~~~v~~lA~~-L---~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~  192 (652)
T TIGR01217       117 WAELRRQVASLAAA-L---RALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFT  192 (652)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccch---------HHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCC
Q 009756           81 DQEF---------FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDE  151 (526)
Q Consensus        81 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  151 (526)
                      ++..         ...+.++....+       ..+.++.++........  .....+...|++++...............
T Consensus       193 ~~~~~~~~k~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (652)
T TIGR01217       193 VDGYRYNGKEHDRRDKVAEVRKELP-------TLRAVVHIPYLGPRETE--APKIDGALDLEDFTAAAQAAELVFEQLPF  263 (652)
T ss_pred             ccccccCCcccchHHHHHHHHhcCC-------CccEEEEEeCCCCcccc--cccccCcccHHHHHhcccCCCCCceecCC
Confidence            8753         334444444333       34566666532211000  00112335677776542211111122456


Q ss_pred             CCeEEEEecCCCCCCccceeecchhHHH-HHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc----
Q 009756          152 WQSIALGYTSGTTASPKGVVVSHRGAYL-MSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ----  226 (526)
Q Consensus       152 ~~~a~i~~TSGsTG~pK~v~~t~~~l~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~----  226 (526)
                      +++++|+|||||||.||||+++|.+++. ........++++++|++++..|+.|+.+ ...+.++..|++++++..    
T Consensus       264 ~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~  342 (652)
T TIGR01217       264 DHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-NWLVSGLATGATLVLYDGSPGF  342 (652)
T ss_pred             CCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-HHHHHHHhcCcEEEEECCCCCC
Confidence            8999999999999999999999998654 3344445578899999999999998753 345567788888888742    


Q ss_pred             cCHHHHHHHHHhcCceeeeccHHHHHHHHccCC--CCCCCCCCceeeEeccCCCCCHHHHHHHhh-cC--Ceeecccccc
Q 009756          227 VTAKAVYTAIATHGVTHFCAAPVVLNAIANASP--EDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KG--FRITHTYGLT  301 (526)
Q Consensus       227 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~--~~i~~~YG~t  301 (526)
                      .++..+++.++++++|++.+.|.+++.+.....  ....+ +++||.+++||++++++..+++.+ ++  ..+.+.||+|
T Consensus       343 ~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~-l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~T  421 (652)
T TIGR01217       343 PATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHD-LSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGT  421 (652)
T ss_pred             CCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCC-hhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHH
Confidence            368899999999999999888888877765421  12334 899999999999999999998874 43  5678899999


Q ss_pred             cCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCc--cccccccCChhh
Q 009756          302 ELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS--CVMKGYLKNPKA  379 (526)
Q Consensus       302 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~--~~~~gy~~~~~~  379 (526)
                      |+++.....  .+.        .....+++|.|.+++ +++|+|++ |++++ |  +.|||+++|+  +++.||+++++.
T Consensus       422 E~~~~~~~~--~~~--------~~~~~g~~g~p~~g~-~v~ivd~~-g~~~~-g--~~GEl~v~gp~p~~~~gy~~~~~~  486 (652)
T TIGR01217       422 DICSCFAGA--NPT--------LPVHIGEIQAPGLGT-AVQSWDPE-GKPVT-G--EVGELVCTNPMPSMPIRFWNDPDG  486 (652)
T ss_pred             HHhccccCC--CCC--------CCCcCCccCCCcCCC-ceEEECCC-CCCCC-C--CccEEEEecCCCccccceeCCCcc
Confidence            975333221  110        011236788999999 59999987 88774 4  7999999996  688999999875


Q ss_pred             hh---hhhc--CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEE
Q 009756          380 NE---EAFA--NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA  454 (526)
Q Consensus       380 ~~---~~~~--~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~  454 (526)
                      +.   ..|.  +|||+|||+|++++||+++++||+||+|+++|++|+|.+||.+|.+||.|.+++|++.+++..++.+++
T Consensus       487 t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~a  566 (652)
T TIGR01217       487 SKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVL  566 (652)
T ss_pred             chhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEE
Confidence            43   1232  689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          455 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       455 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                      +|++.++....  ++..++|+++++++|+.+++|+.+.+++ ||+|++||++|+.|++++....
T Consensus       567 fVv~~~~~~~~--~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~~~  628 (652)
T TIGR01217       567 FVHLAPGATLD--DALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQGTP  628 (652)
T ss_pred             EEEECCCCCCC--HHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHcCCC
Confidence            99998765421  1256789999999999999999999998 9999999999999999976443

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.1e-68  Score=476.49  Aligned_cols=473  Identities=27%  Similarity=0.407  Sum_probs=420.4

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|+. |   ++.|+++||+|.+.+||..++++++||++++|+.+|.-=|.....++.+..+...++.+|+
T Consensus        56 Y~eLdqr~d~LAa~-l---~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~  131 (542)
T COG1021          56 YAELDQRADRLAAG-L---RRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIV  131 (542)
T ss_pred             HHHHHHHHHHHHHH-H---HhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheee
Confidence            78999999999999 9   9999999999999999999999999999999999998878888889999999999999999


Q ss_pred             cc-----chHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeE
Q 009756           81 DQ-----EFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI  155 (526)
Q Consensus        81 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a  155 (526)
                      +.     +..+..++.....+       .+++++..++.+..            ......+........+..+.++++++
T Consensus       132 ~~~~~gFd~~~~ar~~~a~~~-------tlr~v~v~ge~~~~------------~~~~~~~~~~a~~~~~a~~~~~~~vA  192 (542)
T COG1021         132 ARQHSGFDYRPFARELVAKHP-------TLRHVIVAGEAEHP------------SVLEAALCHPAGLFTPAPPADAGEVA  192 (542)
T ss_pred             chhhcccCcHHHHHHHHhhCC-------cceEEEEccCCCCc------------chhhhhhhCccccCCcCCCCCCCceE
Confidence            86     34567777777776       67888888665321            22333343444444444557888999


Q ss_pred             EEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhH--HHHHHHhhcceeeeecccCHHHHH
Q 009756          156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS--YTWSLAALCGTSICLRQVTAKAVY  233 (526)
Q Consensus       156 ~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~  233 (526)
                      ++..+.||||.||.+..||.....++++....++++..+++++.+|..|.+.+.  ..+..++.||++++.++.+++..+
T Consensus       193 ~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F  272 (542)
T COG1021         193 FFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCF  272 (542)
T ss_pred             EEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999988775  567788889999999999999999


Q ss_pred             HHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcccccc
Q 009756          234 TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAW  312 (526)
Q Consensus       234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~  312 (526)
                      .+|+++++|+.-.+|.....|++..+....+ +++||.+-+||..+++++.+++. .+||.+-+.|||.|--  +.....
T Consensus       273 ~lIerh~Vt~tALVPpla~LWlqa~e~~~~~-LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGL--vnyTRL  349 (542)
T COG1021         273 PLIERHGVTVTALVPPLASLWLQAAEWERAD-LSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGL--VNYTRL  349 (542)
T ss_pred             HHHHHhccceEEeccHHHHHHHHhhhcccCC-chheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhh--hccccc
Confidence            9999999999999999999999998888877 99999999999999999999998 6799999999999954  332222


Q ss_pred             CCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeec
Q 009756          313 KPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHS  391 (526)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~t  391 (526)
                      .        ++.+....+.|+|+-..|+++|+|.+ |+++++|  +.|+|..+||..++|||+.++-+.+.|+ +|+|+|
T Consensus       350 D--------Dp~E~i~~TQGrPlsP~DEvrvvD~d-g~pv~pG--E~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrs  418 (542)
T COG1021         350 D--------DPPEIIIHTQGRPLSPDDEVRVVDAD-GNPVAPG--EVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRS  418 (542)
T ss_pred             C--------CchHheeecCCCcCCCcceeEEecCC-CCCCCCC--CcceeeecCCeeeeeeccCchhhhhccCcCCceec
Confidence            1        23445557899999999999999998 9999999  8999999999999999999999999996 999999


Q ss_pred             CceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhH
Q 009756          392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLA  471 (526)
Q Consensus       392 GD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  471 (526)
                      ||++++++||++.+.||.+|+|+.+|++|-.+|||+.|..||.|.+++++..+++-.||+.+|||+.++..-      ..
T Consensus       419 GD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~------~~  492 (542)
T COG1021         419 GDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPL------RA  492 (542)
T ss_pred             CceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCC------CH
Confidence            999999999999999999999999999999999999999999999999999999999999999999987642      46


Q ss_pred             HHHHHHHHh-cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          472 EDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       472 ~~l~~~l~~-~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      .+++.++++ .+..|++|.++.+++ +|.|+-|||+++.|++.+...
T Consensus       493 ~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~  539 (542)
T COG1021         493 AQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASR  539 (542)
T ss_pred             HHHHHHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhhh
Confidence            888898876 588999999999999 999999999999999988654

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=6.6e-66  Score=539.66  Aligned_cols=484  Identities=26%  Similarity=0.368  Sum_probs=392.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.+++.++|++ |   ++.|+++||+|+++++|++++++++|||+++| +++|+++.++.+++.++++.++++++|+
T Consensus        61 y~eL~~~v~~~A~~-L---~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~  135 (632)
T PRK07529         61 YAELLADVTRTANL-L---HSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVT  135 (632)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEE
Confidence            78999999999999 9   99999999999999999999999999999999 5699999999999999999999999999


Q ss_pred             ccch-----HHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchh--h-----hhhhhcCcccHHHHHhhCCCCcCC-CC
Q 009756           81 DQEF-----FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ--L-----EYALARGAIEYEKFLETGDPEFAW-KP  147 (526)
Q Consensus        81 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~-----~~~~~~~~~~~~~~l~~~~~~~~~-~~  147 (526)
                      ++..     ...+.......+       ..+.++.++........  .     ......+...|.+.++..+..... ..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (632)
T PRK07529        136 LGPFPGTDIWQKVAEVLAALP-------ELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGR  208 (632)
T ss_pred             eCCCCCchHHHHHHHHHhcCC-------cceeEEEecCcccccccccccccccccccccccCCHHHHHhcCCCccccccC
Confidence            7643     233333333333       45666666543210000  0     000223455677776654432211 12


Q ss_pred             CCCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecc
Q 009756          148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQ  226 (526)
Q Consensus       148 ~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~  226 (526)
                      ...++++++++|||||||.||+|.+||+++.+.+......+++.+++++++.+|++|..++.. .+..+..|+++++...
T Consensus       209 ~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~  288 (632)
T PRK07529        209 PIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATP  288 (632)
T ss_pred             CCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCc
Confidence            246789999999999999999999999999888877777778899999999999999988765 4455566666666532


Q ss_pred             --c----CHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccc
Q 009756          227 --V----TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYG  299 (526)
Q Consensus       227 --~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG  299 (526)
                        +    ....+++.++++++|++.++|+++..|.+..... .. ++++|.+++||+++++++.++++ .+++++++.||
T Consensus       289 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-~~-~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG  366 (632)
T PRK07529        289 QGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVDG-HD-ISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYG  366 (632)
T ss_pred             cccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccC-CC-ccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeec
Confidence              1    1367899999999999999999999999875432 33 78999999999999999999998 56999999999


Q ss_pred             cccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceee--cCCCC---CccCCCCCceEEEEEcCcccccccc
Q 009756          300 LTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVI--DARTN---QPVPADGKTIGEIVMRGSCVMKGYL  374 (526)
Q Consensus       300 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~--d~~~g---~~~~~~~~~~Gel~v~~~~~~~gy~  374 (526)
                      +||++.+++.+...          .....+++|.|+|++ .++++  |++ |   ++++.|  +.|||+++|++++.||+
T Consensus       367 ~TE~~~~~~~~~~~----------~~~~~~svG~~~p~~-~v~i~~~d~~-g~~~~~~~~g--~~Gel~v~gp~v~~GY~  432 (632)
T PRK07529        367 LTEATCVSSVNPPD----------GERRIGSVGLRLPYQ-RVRVVILDDA-GRYLRDCAVD--EVGVLCIAGPNVFSGYL  432 (632)
T ss_pred             ccccCcccccCCcc----------ccccCCCcccccCCc-eEEEEEcCCC-CcccccCCCC--CceEEEEECCCcccccc
Confidence            99998665443211          112347899999998 58875  554 5   677777  79999999999999999


Q ss_pred             CChhhhhhhhcCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEE
Q 009756          375 KNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA  454 (526)
Q Consensus       375 ~~~~~~~~~~~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~  454 (526)
                      +++......+.+|||+|||+|++++||.+++.||.||+|+.+|++|+|.+||..|.++|+|.+++|++.+++..|+.+++
T Consensus       433 ~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a  512 (632)
T PRK07529        433 EAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVA  512 (632)
T ss_pred             CCccccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEE
Confidence            87654433336899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCchhhhhhhHHHHHHHHHhcCC-CccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          455 FVTLKPEADELDKGKLAEDVSKFCRAKMP-SYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       455 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                      +|++.++...     ..+++.++++++++ .+++|+.+.+++ ||+|++||++|+.|++.+.+..
T Consensus       513 ~v~l~~~~~~-----~~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~~~~~  572 (632)
T PRK07529        513 YVQLKPGASA-----TEAELLAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRRDAIRRV  572 (632)
T ss_pred             EEEEcCCCCC-----CHHHHHHHHHHhcchhccCCcEEEEecCCCCCCCCcccHHHHHHHHHHHH
Confidence            9999877654     45789999999986 578999999888 9999999999999999987643

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.5e-66  Score=537.63  Aligned_cols=476  Identities=24%  Similarity=0.371  Sum_probs=400.7

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|.+ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        76 y~el~~~v~~~A~~-L---~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~  151 (570)
T PRK04319         76 YKELKELSNKFANV-L---KELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLIT  151 (570)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      ++........  ...+       ..+.++.+++...        ...+..++.+++......... ....++++++++||
T Consensus       152 ~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~T  213 (570)
T PRK04319        152 TPALLERKPA--DDLP-------SLKHVLLVGEDVE--------EGPGTLDFNALMEQASDEFDI-EWTDREDGAILHYT  213 (570)
T ss_pred             Chhhhhccch--hcCC-------CceEEEEECCCcC--------CCcCccCHHHHHhhcCCcCCc-cccCCCCCEEEEeC
Confidence            8876443321  1122       3455666554321        112345677766554332221 23466889999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeec-ccCHHHHHHHHHh
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLR-QVTAKAVYTAIAT  238 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~i~~  238 (526)
                      |||||.||+|+++|.++...+......+++++++++++..|++|..+... .+.++..|+++++.. .+++..+++.+++
T Consensus       214 SGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~  293 (570)
T PRK04319        214 SGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILED  293 (570)
T ss_pred             CCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHH
Confidence            99999999999999999888877777788999999999999999887654 556667777776664 5789999999999


Q ss_pred             cCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCC
Q 009756          239 HGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       239 ~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      +++|+++++|++++.|.+....  .... ++++|.+++||+++++++.+++. .++.++++.||+||+++.++.....  
T Consensus       294 ~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~--  370 (570)
T PRK04319        294 YKVTVWYTAPTAIRMLMGAGDDLVKKYD-LSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPA--  370 (570)
T ss_pred             cCCeEEEeCHHHHHHHHhcCCcccccCC-cccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCC--
Confidence            9999999999999999876432  2233 78999999999999999999988 4689999999999998755432111  


Q ss_pred             CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcC--ccccccccCChhhhhhhhcCCeeecCc
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG--SCVMKGYLKNPKANEEAFANGWFHSGD  393 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~g~~~tGD  393 (526)
                              .....+++|.|++++ +++|+|++ +.+++.|  +.|||+++|  +.++.||++++..+...|.+|||+|||
T Consensus       371 --------~~~~~~~~G~p~~g~-~~~i~d~~-~~~~~~g--~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGD  438 (570)
T PRK04319        371 --------MDIKPGSMGKPLPGI-EAAIVDDQ-GNELPPN--RMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGD  438 (570)
T ss_pred             --------CCCCCCcCcCCCCCC-EEEEECCC-CCCCCCC--CceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCc
Confidence                    011236899999999 69999987 8888877  899999997  899999999999999999999999999


Q ss_pred             eeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHH
Q 009756          394 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAED  473 (526)
Q Consensus       394 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  473 (526)
                      +++++++|+++++||.+|+|+.+|++|+|.+||..+.++|.|.+++|++.+++..++.++++++..++....  ....++
T Consensus       439 l~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~--~~~~~~  516 (570)
T PRK04319        439 SAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPS--EELKEE  516 (570)
T ss_pred             EEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCC--HHHHHH
Confidence            999999999999999999999999999999999999999999999999999998899999999988764321  124578


Q ss_pred             HHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          474 VSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       474 l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                      ++++++++|+.|++|+.+.+++ ||+|++||++|+.|+++..+
T Consensus       517 l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~  559 (570)
T PRK04319        517 IRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWELG  559 (570)
T ss_pred             HHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHhC
Confidence            9999999999999999999988 99999999999999999754

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=3.4e-66  Score=536.64  Aligned_cols=492  Identities=22%  Similarity=0.290  Sum_probs=388.4

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++++
T Consensus        35 y~el~~~~~~la~~-L---~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~  110 (563)
T PLN02860         35 GHEFVDGVLSLAAG-L---LRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVT  110 (563)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHH-HhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756           81 DQEFFSLAEEALK-MMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~  159 (526)
                      +++.......... ..+       ....++..++......    .........+++...............++++++++|
T Consensus       111 ~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~  179 (563)
T PLN02860        111 DETCSSWYEELQNDRLP-------SLMWQVFLESPSSSVF----IFLNSFLTTEMLKQRALGTTELDYAWAPDDAVLICF  179 (563)
T ss_pred             ecccchHHHHHhhccCC-------ceeEEEEecCcccccc----cchhhccccchhccCccccccccCCCCCCCeEEEEe
Confidence            8865433332211 111       2233444433211000    000011111111111101111111245789999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhc
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATH  239 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  239 (526)
                      ||||||.||+|+++|.++..........+++.++++++...|++|..++...+.++..|+++++.+.+++..+++.++++
T Consensus       180 TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~  259 (563)
T PLN02860        180 TSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLPKFDAKAALQAIKQH  259 (563)
T ss_pred             cCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEecCCCCHHHHHHHHHHh
Confidence            99999999999999999988777776778899999999999999999998888888999999888889999999999999


Q ss_pred             CceeeeccHHHHHHHHccCCCCC-CCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCccccccCCC-
Q 009756          240 GVTHFCAAPVVLNAIANASPEDT-ILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPE-  315 (526)
Q Consensus       240 ~~t~l~~~P~~~~~l~~~~~~~~-~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~-  315 (526)
                      ++|+++++|+++..|.+...... ...++++|.+++||+++++++.+.+.+ + +.++++.||+||+++.++....... 
T Consensus       260 ~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  339 (563)
T PLN02860        260 NVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPT  339 (563)
T ss_pred             CCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccc
Confidence            99999999999999987643221 122789999999999999999999985 4 7899999999999765543322110 


Q ss_pred             CCC-----------CCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh
Q 009756          316 WDS-----------LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF  384 (526)
Q Consensus       316 ~~~-----------~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~  384 (526)
                      ...           ...........++|.|++++ +++|++++      .+  +.|||+++|+.++.||+++++.+...|
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~~~~------~g--~~Gel~v~g~~~~~GY~~~~~~t~~~~  410 (563)
T PLN02860        340 LESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHV-ELKIGLDE------SS--RVGRILTRGPHVMLGYWGQNSETASVL  410 (563)
T ss_pred             cccchhhhhhhcccccccccccCCcccCCccCCc-EEEEecCC------CC--ceeEEEEecCcccccccCCccccchhc
Confidence            000           00000011124689999999 69999865      23  789999999999999999999988887


Q ss_pred             c-CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCc
Q 009756          385 A-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEAD  463 (526)
Q Consensus       385 ~-~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  463 (526)
                      . +|||+|||+|++++||++++.||.+|+|+++|++|+|.+||.++.++|+|.+++|++.+++..++.++++|++.++..
T Consensus       411 ~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~  490 (563)
T PLN02860        411 SNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWI  490 (563)
T ss_pred             cCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccc
Confidence            4 899999999999999999999999999999999999999999999999999999999999988999999999886521


Q ss_pred             h---------hhhhhhHHHHHHHHHh-cCCCccCCcEEEe-cc-ccCCCCccccHHHHHHHHHhc
Q 009756          464 E---------LDKGKLAEDVSKFCRA-KMPSYWVPKSVVF-AA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       464 ~---------~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~-~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      .         .......+.+.+++++ +|+.|++|+.+++ .+ ||+|++||++|++|++++.+.
T Consensus       491 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~~~~  555 (563)
T PLN02860        491 WSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLSH  555 (563)
T ss_pred             cccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHHHHHHHHHHH
Confidence            0         0011245788899987 5999999998875 46 999999999999999998654

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-65  Score=539.84  Aligned_cols=484  Identities=23%  Similarity=0.318  Sum_probs=393.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||++++.++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus       101 y~eL~~~v~~lA~~-L---~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~  176 (637)
T PRK00174        101 YRELHREVCRFANA-L---KSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVIT  176 (637)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchH---------HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCC
Q 009756           81 DQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDE  151 (526)
Q Consensus        81 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  151 (526)
                      ++...         ..+.+.....+       ....++.++.......    ........+.+++........ .....+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~  244 (637)
T PRK00174        177 ADEGVRGGKPIPLKANVDEALANCP-------SVEKVIVVRRTGGDVD----WVEGRDLWWHELVAGASDECE-PEPMDA  244 (637)
T ss_pred             cCccccCCcccchHHHHHHHHHhCC-------CccEEEEEcCCCCCcC----cCCCCcccHHHHHhhcCCCCC-ccccCC
Confidence            87532         22333333222       3455666544221000    001123446666544322221 223567


Q ss_pred             CCeEEEEecCCCCCCccceeecchhHHHHHHh-hHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecc---
Q 009756          152 WQSIALGYTSGTTASPKGVVVSHRGAYLMSLN-GALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQ---  226 (526)
Q Consensus       152 ~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~---  226 (526)
                      +++++|+|||||||.||+|+++|.+++..... ....+++++++++++..|++|..+... .+.++..|+++++...   
T Consensus       245 ~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~  324 (637)
T PRK00174        245 EDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPN  324 (637)
T ss_pred             CCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCC
Confidence            89999999999999999999999997655443 334467889999999999999988754 5556667777777642   


Q ss_pred             -cCHHHHHHHHHhcCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHhh-cC---Ceeecccc
Q 009756          227 -VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KG---FRITHTYG  299 (526)
Q Consensus       227 -~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~---~~i~~~YG  299 (526)
                       .++..+++.++++++|++.++|++++.|++....  .... +++||.++++|+++++++.+++.+ ++   +++++.||
T Consensus       325 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG  403 (637)
T PRK00174        325 YPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYD-LSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWW  403 (637)
T ss_pred             CCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCC-ccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEeccc
Confidence             4789999999999999999999999999887543  2233 789999999999999999998873 33   78999999


Q ss_pred             cccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcC--ccccccccCCh
Q 009756          300 LTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG--SCVMKGYLKNP  377 (526)
Q Consensus       300 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~--~~~~~gy~~~~  377 (526)
                      +||+++.++......         .....+++|.|++++ .++|+|++ |++++.|  +.|||+++|  ++++.||++++
T Consensus       404 ~TE~~~~~~~~~~~~---------~~~~~~~vG~p~~g~-~~~i~d~~-g~~~~~g--~~Gel~v~g~~p~~~~gy~~~~  470 (637)
T PRK00174        404 QTETGGIMITPLPGA---------TPLKPGSATRPLPGI-QPAVVDEE-GNPLEGG--EGGNLVIKDPWPGMMRTIYGDH  470 (637)
T ss_pred             ccccCCceEecCCCC---------CCcCCCcccCCCCCc-eEEEECCC-CCCCCCC--CcEEEEEcCCCCcccccccCCH
Confidence            999987654321110         011236799999999 69999987 8999887  789999999  68999999999


Q ss_pred             hhhhhhh---cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEE
Q 009756          378 KANEEAF---ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA  454 (526)
Q Consensus       378 ~~~~~~~---~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~  454 (526)
                      +.+...+   .+|||+|||++++++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..|+.+++
T Consensus       471 ~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a  550 (637)
T PRK00174        471 ERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYA  550 (637)
T ss_pred             HHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEE
Confidence            8777665   3789999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          455 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       455 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      +|++.++....  ....++|+++++++|+.+++|..+.+++ ||+|++||++|+.|++++.+.
T Consensus       551 ~vv~~~~~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  611 (637)
T PRK00174        551 FVTLKGGEEPS--DELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGE  611 (637)
T ss_pred             EEEECCCCCCC--HHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence            99988765421  1246789999999999999999999988 999999999999999987654

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=8.1e-66  Score=533.45  Aligned_cols=479  Identities=25%  Similarity=0.332  Sum_probs=393.6

Q ss_pred             CccchhhhhhcccccccCccC-CCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLL-FPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~-~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.++++++|++ |   ++ .|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.+++++++
T Consensus        69 y~el~~~~~~lA~~-L---~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~  144 (560)
T PLN02574         69 YSELQPLVKSMAAG-L---YHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAF  144 (560)
T ss_pred             HHHHHHHHHHHHHH-H---HHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEE
Confidence            78999999999999 9   88 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~  159 (526)
                      ++.+....+...    .         ..++.+.......     ........+.+++....... ......++++++++|
T Consensus       145 ~~~~~~~~~~~~----~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~  205 (560)
T PLN02574        145 TSPENVEKLSPL----G---------VPVIGVPENYDFD-----SKRIEFPKFYELIKEDFDFV-PKPVIKQDDVAAIMY  205 (560)
T ss_pred             ECHHHHHHHHhc----C---------CcEEecCcccccc-----cCccCcccHHHHhhcCCccc-ccCCCCcCCEEEEEc
Confidence            998765444321    1         1233332210000     00112345666655433221 112246789999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhhHhH----hC-CcCCcEEEEecccccchhhHHHHH-HHhhcceeeeecccCHHHHH
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNGALI----WG-MNEGAVFLWTLPMFHGNGWSYTWS-LAALCGTSICLRQVTAKAVY  233 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~~~~----~~-~~~~~~~~~~~p~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~  233 (526)
                      ||||||.||+|+++|+++...+......    +. ....++++..+|++|.+++...+. .+..|+++++...+++..++
T Consensus       206 TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~  285 (560)
T PLN02574        206 SSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMV  285 (560)
T ss_pred             CCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHH
Confidence            9999999999999999988776654431    22 235678899999999999865544 44567777777788999999


Q ss_pred             HHHHhcCceeeeccHHHHHHHHccCCC-CCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCcccc
Q 009756          234 TAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVC  310 (526)
Q Consensus       234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~  310 (526)
                      +.++++++|+++++|+++..|.+.... .... ++++|.+++||+++++++.+++. .+ ++++++.||+||++.+.+..
T Consensus       286 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~  364 (560)
T PLN02574        286 KVIDRFKVTHFPVVPPILMALTKKAKGVCGEV-LKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRG  364 (560)
T ss_pred             HHHHHcCCeEEecCCHHHHHHHhCccccccCc-cccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecC
Confidence            999999999999999999999987543 2233 78999999999999999999987 44 78999999999997654422


Q ss_pred             ccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCee
Q 009756          311 AWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWF  389 (526)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~  389 (526)
                      ... .        ......++|.+.+++ +++|+|+++|++++.|  +.|||+++|++++.||++++..+...|. +|||
T Consensus       365 ~~~-~--------~~~~~~~vG~~~~~~-~v~i~d~~~g~~~~~g--~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~  432 (560)
T PLN02574        365 FNT-E--------KLSKYSSVGLLAPNM-QAKVVDWSTGCLLPPG--NCGELWIQGPGVMKGYLNNPKATQSTIDKDGWL  432 (560)
T ss_pred             CCc-c--------ccCCCCceeeeCCCc-EEEEEeCCCCcCCCCC--CCeEEEEECcchhhhhcCChhHhhhhccCCCCc
Confidence            111 0        011236899999999 6999998779999988  7999999999999999999999988874 8999


Q ss_pred             ecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhh
Q 009756          390 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGK  469 (526)
Q Consensus       390 ~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  469 (526)
                      +|||+|++++||.+++.||.+|+||++|++|+|.+||.+|.+||+|.+++|++.+++..++.++++|+..++...     
T Consensus       433 ~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~-----  507 (560)
T PLN02574        433 RTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTL-----  507 (560)
T ss_pred             ccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCC-----
Confidence            999999999999999999999999999999999999999999999999999999998888999999998765443     


Q ss_pred             hHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCCcc
Q 009756          470 LAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPVK  520 (526)
Q Consensus       470 ~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~~  520 (526)
                      ..+++.++++++|+.+++|+.+.+++ ||+|++||++|+.|++++...+..+
T Consensus       508 ~~~~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~~~~~  559 (560)
T PLN02574        508 SQEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNSVSSR  559 (560)
T ss_pred             CHHHHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhccccC
Confidence            45789999999999999999998888 9999999999999999998776543

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=2.1e-65  Score=529.54  Aligned_cols=473  Identities=31%  Similarity=0.438  Sum_probs=396.4

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        58 y~el~~~~~~~a~~-L---~~~g~~~g~~Val~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~  133 (547)
T PRK13295         58 YRELAALVDRVAVG-L---ARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVV  133 (547)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEECCCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchH-----HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCC-----C--cCCCCC
Q 009756           81 DQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP-----E--FAWKPP  148 (526)
Q Consensus        81 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~--~~~~~~  148 (526)
                      +++..     ..+.+.....+       ....++.++...             ..++.+++.....     .  ......
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (547)
T PRK13295        134 PKTFRGFDHAAMARRLRPELP-------ALRHVVVVGGDG-------------ADSFEALLITPAWEQEPDAPAILARLR  193 (547)
T ss_pred             eccccCcchHHHHHHHhhhCC-------CcceEEEecCCC-------------ccCHHHHhhCCccccccccccccccCC
Confidence            87642     22333322222       345566554321             1334444432110     0  001112


Q ss_pred             CCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeeccc
Q 009756          149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQV  227 (526)
Q Consensus       149 ~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~  227 (526)
                      ..++++++++|||||||.||+|.++|.++...+......+++++++++++..|++|..++.. .+.++..|++++.....
T Consensus       194 ~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~  273 (547)
T PRK13295        194 PGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIW  273 (547)
T ss_pred             CCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCC
Confidence            45689999999999999999999999999988888778888999999999999999988754 55566778877777778


Q ss_pred             CHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCC
Q 009756          228 TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGP  306 (526)
Q Consensus       228 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~  306 (526)
                      ++..+++.++++++|.+.++|.++..|.......... ++++|.+++||+++++++.+++. .+++++++.||+||++.+
T Consensus       274 ~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~  352 (547)
T PRK13295        274 DPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRP-VSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAV  352 (547)
T ss_pred             CHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCC-cccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCe
Confidence            9999999999999999999999999999876555455 88999999999999999999987 569999999999999865


Q ss_pred             ccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcC
Q 009756          307 ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN  386 (526)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~  386 (526)
                      ++.+....         ......++|.|.+++ .++|+|++ +++++.|  +.|||+++|+.++.||+++++.+... .+
T Consensus       353 ~~~~~~~~---------~~~~~~~~G~~~~~~-~v~i~d~~-~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~-~~  418 (547)
T PRK13295        353 TLTKLDDP---------DERASTTDGCPLPGV-EVRVVDAD-GAPLPAG--QIGRLQVRGCSNFGGYLKRPQLNGTD-AD  418 (547)
T ss_pred             eeccCCCc---------chhccCccccccCCc-EEEEECCC-CCCCCCC--CCCeEEEEcCcccccccCCccccccC-CC
Confidence            54432111         112235789999999 59999987 8888887  79999999999999999998887766 68


Q ss_pred             CeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhh
Q 009756          387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELD  466 (526)
Q Consensus       387 g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  466 (526)
                      |||+|||+|+++++|++++.||.+|+++.+|.+|+|.+||.+|.+++.|.+++|++.+++..++.+++++++.++...  
T Consensus       419 g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~--  496 (547)
T PRK13295        419 GWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSL--  496 (547)
T ss_pred             CCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCC--
Confidence            899999999999999999999999999999999999999999999999999999999988888999999998766433  


Q ss_pred             hhhhHHHHHHHHHh-cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          467 KGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       467 ~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                         ..+++.+++.+ .++.+++|+.+.+++ ||+|++||++|.+|++++.+.+
T Consensus       497 ---~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~~~~  546 (547)
T PRK13295        497 ---DFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRGED  546 (547)
T ss_pred             ---CHHHHHHHHHhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHhcCC
Confidence               45788888886 799999999999888 9999999999999999887644

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.1e-65  Score=535.51  Aligned_cols=492  Identities=20%  Similarity=0.241  Sum_probs=391.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        87 y~eL~~~v~~lA~~-L---~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~  162 (629)
T PRK10524         87 FRQLHDEVNRMAAM-L---RSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVS  162 (629)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccch---------HHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCC
Q 009756           81 DQEF---------FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDE  151 (526)
Q Consensus        81 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  151 (526)
                      ++..         ...+.++.....      .....++.++.......    ........+.++...............+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~vi~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (629)
T PRK10524        163 ADAGSRGGKVVPYKPLLDEAIALAQ------HKPRHVLLVDRGLAPMA----RVAGRDVDYATLRAQHLGARVPVEWLES  232 (629)
T ss_pred             ccCcccCCcccccHHHHHHHHHhcC------CCCCEEEEEeCCCCCcC----cccCCcccHHHHHhcCCCCCCCceeeCC
Confidence            7642         233444433321      02456666654211000    0111224566655443222111122467


Q ss_pred             CCeEEEEecCCCCCCccceeecchhHHHHHHh-hHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeec----
Q 009756          152 WQSIALGYTSGTTASPKGVVVSHRGAYLMSLN-GALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLR----  225 (526)
Q Consensus       152 ~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~----  225 (526)
                      +++++++|||||||.||+|+++|.+++..... ....+++.+++++++..|++|..+..+ .+.+++.|+++++..    
T Consensus       233 ~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~  312 (629)
T PRK10524        233 NEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPT  312 (629)
T ss_pred             CCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCC
Confidence            89999999999999999999999987544433 344567889999999999999887654 455566677776664    


Q ss_pred             ccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeeccccccc
Q 009756          226 QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTE  302 (526)
Q Consensus       226 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE  302 (526)
                      ..++..+++.++++++|+++++|+.++.|.+....  ...+ ++++|.+++|||++++++.+++. .+++++++.||+||
T Consensus       313 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE  391 (629)
T PRK10524        313 RPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHD-LSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTE  391 (629)
T ss_pred             CCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccC-hhheeEEEEeCCCCCHHHHHHHHHhcCCCeEecccccc
Confidence            35789999999999999999999999998876432  2233 78999999999999999999987 56899999999999


Q ss_pred             CCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCc---cccccccCChhh
Q 009756          303 LTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS---CVMKGYLKNPKA  379 (526)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~  379 (526)
                      ++..++.......       ......+++|.|++++ +++|+|+++|++++.|  +.|||+++||   ..+.+|+++++.
T Consensus       392 ~~~~~~~~~~~~~-------~~~~~~~~~G~p~~g~-~~~i~d~~~g~~~~~g--~~Gel~i~gp~~~~~~~~~~~~~~~  461 (629)
T PRK10524        392 TGWPILAIARGVE-------DRPTRLGSPGVPMYGY-NVKLLNEVTGEPCGPN--EKGVLVIEGPLPPGCMQTVWGDDDR  461 (629)
T ss_pred             ccchhhcCCCCcc-------cCcCCCCCcccCcCCc-eEEEEeCCCCCCCCCC--CcEEEEEcCCCChhhcCCccCChHH
Confidence            9854332211100       0112236899999999 6999998569999887  7999999998   577899998877


Q ss_pred             hhhhh----cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEE
Q 009756          380 NEEAF----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF  455 (526)
Q Consensus       380 ~~~~~----~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  455 (526)
                      +...+    .++||+|||+|++++||.++++||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..|+.++++
T Consensus       462 ~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~  541 (629)
T PRK10524        462 FVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAF  541 (629)
T ss_pred             HHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEE
Confidence            66543    36899999999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             EEecCCCchh---hhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          456 VTLKPEADEL---DKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       456 v~~~~~~~~~---~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                      +++.++....   ......++|+++++++|+.+++|+.+.+++ ||+|++||++|+.|++++.+..
T Consensus       542 vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~  607 (629)
T PRK10524        542 VVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEGRD  607 (629)
T ss_pred             EEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcCCC
Confidence            9988654221   122356789999999999999999999988 9999999999999999877543

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.2e-65  Score=528.46  Aligned_cols=465  Identities=19%  Similarity=0.215  Sum_probs=370.9

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+   .+||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        48 y~el~~~~~~lA~~-L---~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~  120 (539)
T PRK06334         48 YNQVRKAVIALATK-V---SK---YPDQHIGIMMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLT  120 (539)
T ss_pred             HHHHHHHHHHHHHH-H---hh---ccCCeEEEEcCCchHHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEe
Confidence            78999999999999 8   66   38999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhh-----CCCC----cCCCCCCCC
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLET-----GDPE----FAWKPPEDE  151 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~----~~~~~~~~~  151 (526)
                      +++....+.+.......      ....++.+++...            ...+.+.+..     .+..    ........+
T Consensus       121 ~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (539)
T PRK06334        121 SKQLMQHLAQTHGEDAE------YPFSLIYMEEVRK------------ELSFWEKCRIGIYMSIPFEWLMRWFGVSDKDP  182 (539)
T ss_pred             hHHHHHHHhhhhhcccc------ccccEEEEehhhh------------hccHHHhhhhhhhhcCCchhhhhcccCCCCCc
Confidence            98766555443221000      0123444432110            0011111000     0000    000112467


Q ss_pred             CCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeec-ccCH
Q 009756          152 WQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLR-QVTA  229 (526)
Q Consensus       152 ~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~-~~~~  229 (526)
                      +++++++|||||||.||+|.+||+++..........++++.+|++++.+|++|.+++.. .+.++..|+++++.. .+++
T Consensus       183 ~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~  262 (539)
T PRK06334        183 EDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYP  262 (539)
T ss_pred             CCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCH
Confidence            89999999999999999999999999988877777788899999999999999999864 455666777776654 4789


Q ss_pred             HHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCc
Q 009756          230 KAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPA  307 (526)
Q Consensus       230 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~  307 (526)
                      ..+++.|+++++|++.++|+++..|++........ ++++|.+++||+++++++.+++.+ + ++++++.||+||++.++
T Consensus       263 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~  341 (539)
T PRK06334        263 KKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESC-LPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVI  341 (539)
T ss_pred             HHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccc-cccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceE
Confidence            99999999999999999999999998876544444 889999999999999999999984 4 78999999999998665


Q ss_pred             cccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh--c
Q 009756          308 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF--A  385 (526)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~--~  385 (526)
                      +......          .....++|.|++++ +++|+|++++.+++.|  +.|||+++|++++.||+++++.+....  .
T Consensus       342 ~~~~~~~----------~~~~~~vG~p~~g~-~v~i~d~~~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~  408 (539)
T PRK06334        342 TINTVNS----------PKHESCVGMPIRGM-DVLIVSEETKVPVSSG--ETGLVLTRGTSLFSGYLGEDFGQGFVELGG  408 (539)
T ss_pred             EeccCCC----------CCCCCcCceecCCC-EEEEEcCCCCccCCCC--ceEEEEEecCcccccccCCcccccceeeCC
Confidence            5332110          11225789999999 6999998878999988  799999999999999999988644322  2


Q ss_pred             CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeee------eEEEEcCCCCCCceeEEEEEec
Q 009756          386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE------AAVVARPDERWGESPCAFVTLK  459 (526)
Q Consensus       386 ~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~------~~v~~~~~~~~~~~~~~~v~~~  459 (526)
                      +|||+|||+|+++++|.+++.||.+|+||++|++|+|.+||.+|.+||+|.+      ++|++.+++.  ..++++++..
T Consensus       409 ~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~--~~~~~~~~~~  486 (539)
T PRK06334        409 ETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK--VRLCLFTTFP  486 (539)
T ss_pred             ceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCc--eEEEEEEecc
Confidence            6799999999999999999999999999999999999999999999999997      7787777532  3444554422


Q ss_pred             CCCchhhhhhhHHHHHHHHHhc-CCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          460 PEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       460 ~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                        .       ..+++.++++++ ++.|++|+.+.+++ ||+|++||++|+.|++++.+
T Consensus       487 --~-------~~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  535 (539)
T PRK06334        487 --T-------SISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALAKS  535 (539)
T ss_pred             --C-------ChHHHHHHHHhcCCcccccchheeeecccccccCCcccHHHHHHHHHH
Confidence              1       246788888886 78999999999888 99999999999999998765

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.3e-65  Score=539.20  Aligned_cols=486  Identities=19%  Similarity=0.224  Sum_probs=389.1

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.+++.++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus       117 y~eL~~~v~~lA~~-L---~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~  192 (655)
T PRK03584        117 WAELRRQVAALAAA-L---RALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIA  192 (655)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchH---------HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCC
Q 009756           81 DQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDE  151 (526)
Q Consensus        81 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  151 (526)
                      ++...         ..+.++....+       ....++.++.....   ...........|++++...............
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (655)
T PRK03584        193 VDGYRYGGKAFDRRAKVAELRAALP-------SLEHVVVVPYLGPA---AAAAALPGALLWEDFLAPAEAAELEFEPVPF  262 (655)
T ss_pred             ccccccCCcccchHHHHHHHHhcCC-------CccEEEEEecCCCc---ccccccCCcccHHHHhhccccCCCCceecCC
Confidence            87532         23333333332       34566666543210   0001122345677776532222111223567


Q ss_pred             CCeEEEEecCCCCCCccceeecchhHHHH-HHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec----c
Q 009756          152 WQSIALGYTSGTTASPKGVVVSHRGAYLM-SLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR----Q  226 (526)
Q Consensus       152 ~~~a~i~~TSGsTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~----~  226 (526)
                      +++++|+|||||||.||||+++|.+++.. .......+++.+++++++..++.|+.. ...+.+++.|+++++..    .
T Consensus       263 ~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~L~~G~t~vl~~~~~~~  341 (655)
T PRK03584        263 DHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMW-NWLVSGLLVGATLVLYDGSPFY  341 (655)
T ss_pred             CCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhH-HHHHHHHHcCCEEEEeCCCCCC
Confidence            89999999999999999999999987544 445556678899999999999888754 34556777888888774    2


Q ss_pred             cCHHHHHHHHHhcCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHhh-c--CCeeecccccc
Q 009756          227 VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K--GFRITHTYGLT  301 (526)
Q Consensus       227 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~--~~~i~~~YG~t  301 (526)
                      .++..+++.++++++|++.++|++++.+.+....  ...+ +++||.+++||+++++++.+++.+ +  +.++.+.||+|
T Consensus       342 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~T  420 (655)
T PRK03584        342 PDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHD-LSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGT  420 (655)
T ss_pred             CCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCC-hhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChH
Confidence            5789999999999999999999999998865321  2233 889999999999999999999874 3  57899999999


Q ss_pred             cCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCc--cccccccCChhh
Q 009756          302 ELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS--CVMKGYLKNPKA  379 (526)
Q Consensus       302 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~--~~~~gy~~~~~~  379 (526)
                      |+++......  +.        .....+++|.|.+++ +++|+|++ |+++ .+  +.|||+++|+  +++.||+++++.
T Consensus       421 E~~~~~~~~~--~~--------~~~~~g~~g~p~~g~-~~~ivd~~-g~~~-~g--~~GeL~v~gp~p~~~~gy~~~~~~  485 (655)
T PRK03584        421 DICSCFVGGN--PL--------LPVYRGEIQCRGLGM-AVEAWDED-GRPV-VG--EVGELVCTKPFPSMPLGFWNDPDG  485 (655)
T ss_pred             hhhcccccCC--CC--------CCcCCCccCCCcCCc-eeEEECCC-CCCC-CC--CceEEEEccCCCCCcceeeCCCcc
Confidence            9865333211  00        011236789999999 59999987 8877 45  7899999996  789999998875


Q ss_pred             hh--hh-h--cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEE
Q 009756          380 NE--EA-F--ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA  454 (526)
Q Consensus       380 ~~--~~-~--~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~  454 (526)
                      +.  .. |  .+|||+|||+|++++||.++++||.||+||++|++|+|.+||.+|.+||.|.+|+|++.+++..++.+++
T Consensus       486 ~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a  565 (655)
T PRK03584        486 SRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPL  565 (655)
T ss_pred             chHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEE
Confidence            43  11 2  2579999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             EEEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCCc
Q 009756          455 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPV  519 (526)
Q Consensus       455 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~  519 (526)
                      +|++.++....  ....++|+++++++|+.+++|+.+++++ ||+|++||++|+.|++++.+....
T Consensus       566 ~vv~~~~~~~~--~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~~~~~  629 (655)
T PRK03584        566 FVVLAEGVTLD--DALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHGRPVK  629 (655)
T ss_pred             EEEECCCCCCc--HHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccchHHHHHHHHcCCCCC
Confidence            99998764321  2245789999999999999999999998 999999999999999998765544

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=3.9e-66  Score=541.96  Aligned_cols=487  Identities=20%  Similarity=0.208  Sum_probs=372.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   +++|+++||+|+|+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|+
T Consensus        82 y~el~~~v~~lA~~-L---~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~  157 (666)
T PLN02614         82 YQEVYDIVIKLGNS-L---RSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFV  157 (666)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhh--hcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEE
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYAL--ARGAIEYEKFLETGDPEFAWKPPEDEWQSIALG  158 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~  158 (526)
                      +++....+........      ...+.++.++....  .......  .....+++++++.............++|+++|+
T Consensus       158 ~~~~~~~~~~~~~~~~------~~l~~vi~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~  229 (666)
T PLN02614        158 EEKKISELFKTCPNST------EYMKTVVSFGGVSR--EQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIM  229 (666)
T ss_pred             CHHHHHHHHHhccccc------ccceEEEEeCCCCh--HHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEE
Confidence            8765433322211100      02455666643210  0000000  111356777765443221111224678999999


Q ss_pred             ecCCCCCCccceeecchhHHHHHHhhHhHh-----CCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHH
Q 009756          159 YTSGTTASPKGVVVSHRGAYLMSLNGALIW-----GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVY  233 (526)
Q Consensus       159 ~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  233 (526)
                      |||||||.||||++||+++.+.+......+     .+..+|++++++|++|.+++......+..|+++++. ..++..++
T Consensus       230 yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~-~~~~~~~~  308 (666)
T PLN02614        230 YTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFW-RGDVKLLI  308 (666)
T ss_pred             EcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEe-CCCHHHHH
Confidence            999999999999999999988776654433     567899999999999999886655566677776655 46889999


Q ss_pred             HHHHhcCceeeeccHHHHHHHHccCCC-------------------------------CCC-------------CCCCce
Q 009756          234 TAIATHGVTHFCAAPVVLNAIANASPE-------------------------------DTI-------------LPLTNV  269 (526)
Q Consensus       234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~-------------------------------~~~-------------~~l~~l  269 (526)
                      +.+++++||+++++|++++.+......                               ...             ...+++
T Consensus       309 ~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~l  388 (666)
T PLN02614        309 EDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNV  388 (666)
T ss_pred             HHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcE
Confidence            999999999999999999988642100                               000             001689


Q ss_pred             eeEeccCCCCCHHHHHHHhhc-CCeeecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecC-C
Q 009756          270 VNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDA-R  347 (526)
Q Consensus       270 r~~~~~Ge~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~-~  347 (526)
                      |.+++||+++++++.+.++.+ ++++++.||+||+++..+....  .        .....+++|.|+|++ +++|+|. +
T Consensus       389 r~~~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~--~--------~~~~~gsvG~p~pg~-evki~d~~~  457 (666)
T PLN02614        389 RIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLP--D--------ELDMLGTVGPPVPNV-DIRLESVPE  457 (666)
T ss_pred             EEEEEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeecc--c--------cCCcCCcccCcCCce-EEEEeeecc
Confidence            999999999998875555555 5899999999998754432211  0        011237899999999 6999983 3


Q ss_pred             -CCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCCceEEEeccccceee-eCCeeechHHH
Q 009756          348 -TNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVEV  425 (526)
Q Consensus       348 -~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~-~~G~~v~~~~i  425 (526)
                       .+.+++.|  +.|||+++|++++.||+++++.+...|.+|||+|||+|++++||+++++||.+|+|| .+|++|+|.+|
T Consensus       458 ~~~~~~~~g--~~GEl~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eI  535 (666)
T PLN02614        458 MEYDALAST--PRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENI  535 (666)
T ss_pred             cCcccCCCC--CCceEEEcCCcccccccCCHHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHH
Confidence             24667766  789999999999999999999999999999999999999999999999999999999 57999999999


Q ss_pred             HHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCch---------------hhhhhhHHHHHHHH-----HhcCCCc
Q 009756          426 EKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE---------------LDKGKLAEDVSKFC-----RAKMPSY  485 (526)
Q Consensus       426 e~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~l~~~l-----~~~l~~~  485 (526)
                      |.+|.+||.|.+++|++.+...   .++|+|+++...-.               .+..+..+.+.+.+     ++.|+.|
T Consensus       536 E~~l~~~p~V~~~~V~g~~~~~---~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  612 (666)
T PLN02614        536 ENIYGEVQAVDSVWVYGNSFES---FLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGF  612 (666)
T ss_pred             HHHHhcCCCeeEEEEEecCCcc---eEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCc
Confidence            9999999999999999987432   38888887643100               00011223333333     3569999


Q ss_pred             cCCcEEEecc--cc-----CCCCccccHHHHHHHHHhc
Q 009756          486 WVPKSVVFAA--LP-----KSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       486 ~~p~~~~~~~--lP-----~t~~GKv~r~~l~~~~~~~  516 (526)
                      .+++.+.+.+  +-     +|+++|+.|..+.+.|.+.
T Consensus       613 e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~  650 (666)
T PLN02614        613 EIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSV  650 (666)
T ss_pred             ceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHH
Confidence            9999988776  32     7999999999999988754

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6e-65  Score=521.34  Aligned_cols=463  Identities=29%  Similarity=0.440  Sum_probs=395.1

Q ss_pred             CccchhhhhhcccccccCccC-CCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLL-FPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~-~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||+++++++|++ |   ++ .|+++|++|+++++|++++++++|||+++|++++|+++.++.+++..+++.+++++++
T Consensus        30 y~~l~~~~~~la~~-L---~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~  105 (496)
T PRK06839         30 YKQLHEYVSKVAAY-L---IYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLF  105 (496)
T ss_pred             HHHHHHHHHHHHHH-H---HHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEE
Confidence            78999999999999 8   75 7999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~  159 (526)
                      ++++....+.+.....        ....++.+.+                  ++++.......   .....++++++++|
T Consensus       106 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~------------------~~~~~~~~~~~---~~~~~~~~~~~i~~  156 (496)
T PRK06839        106 VEKTFQNMALSMQKVS--------YVQRVISITS------------------LKEIEDRKIDN---FVEKNESASFIICY  156 (496)
T ss_pred             EcHHHHHHHHHhhhcc--------CcceEEEecc------------------hHhhhccCCCC---CCCCCCCCcEEEEe
Confidence            9987766554443221        1233444432                  22222211111   11245688999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHH-HHHHhhcceeeeecccCHHHHHHHHHh
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT-WSLAALCGTSICLRQVTAKAVYTAIAT  238 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~i~~  238 (526)
                      ||||||.||+|.++|.++..........+++..++++++.+|++|.+++... +..+..|+++++....++..+++.+++
T Consensus       157 TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~  236 (496)
T PRK06839        157 TSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEK  236 (496)
T ss_pred             CCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHh
Confidence            9999999999999999988777766777788999999999999999987654 455666777777677899999999999


Q ss_pred             cCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCCC
Q 009756          239 HGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDS  318 (526)
Q Consensus       239 ~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~  318 (526)
                      +++|++.++|++++.+.......... ++++|.+++||+++++++.+.+.+.|+++.+.||+||++..++......    
T Consensus       237 ~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~----  311 (496)
T PRK06839        237 HKVTVVMGVPTIHQALINCSKFETTN-LQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEED----  311 (496)
T ss_pred             hCCeEEEehHHHHHHHHhCcccccCC-CcccceEEECCCCCCHHHHHHHHHhCCeeEeeccCCCCCcceEeccccc----
Confidence            99999999999999999886655555 8899999999999999999999877999999999999987554332111    


Q ss_pred             CCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEc
Q 009756          319 LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKH  398 (526)
Q Consensus       319 ~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~  398 (526)
                           .....+++|.|.+++ .++|+|++ +..++.|  +.|||+++|+.++.||+++++.+...+.+|||+|||+++++
T Consensus       312 -----~~~~~~~~G~p~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~  382 (496)
T PRK06839        312 -----ARRKVGSIGKPVLFC-DYELIDEN-KNKVEVG--EVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVD  382 (496)
T ss_pred             -----ccccCCCCcccCCCc-eEEEECCC-cCCCCCC--CceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEc
Confidence                 112236899999999 69999988 6778877  79999999999999999999999998999999999999999


Q ss_pred             CCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHH
Q 009756          399 PDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFC  478 (526)
Q Consensus       399 ~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l  478 (526)
                      ++|.+++.||.+|+|+.+|.+|+|.+||.++.++|+|.+++|++.+++..++.++++|+.+++...     ..+++++++
T Consensus       383 ~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~-----~~~~l~~~~  457 (496)
T PRK06839        383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVL-----IEKDVIEHC  457 (496)
T ss_pred             CCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCC-----CHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999989999999998876544     457899999


Q ss_pred             HhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          479 RAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       479 ~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                      ++.|+.+++|..+++++ +|+|.+||++|++|+++..+
T Consensus       458 ~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~  495 (496)
T PRK06839        458 RLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS  495 (496)
T ss_pred             HhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence            99999999999999888 99999999999999988764

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.3e-65  Score=524.66  Aligned_cols=462  Identities=26%  Similarity=0.355  Sum_probs=387.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        71 y~el~~~~~~~A~~-L---~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~  146 (537)
T PRK13382         71 WRELDERSDALAAA-L---QALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIY  146 (537)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEE
Confidence            78999999999999 9   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +.+....+.......+       ....++.+.+..            ....++++....... .  ....+++.++++||
T Consensus       147 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-~--~~~~~~~~~~il~T  204 (537)
T PRK13382        147 DEEFSATVDRALADCP-------QATRIVAWTDED------------HDLTVEVLIAAHAGQ-R--PEPTGRKGRVILLT  204 (537)
T ss_pred             chhhHHHHHHHHhhcc-------ccceEEEecCCc------------ccccHHHHhhccCcC-C--CCCCCCCCeEEEEC
Confidence            9877665555433222       223333332211            112344443322111 1  11346788999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG  240 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  240 (526)
                      |||||.||+|.++|.++..........+.+..+++++...|++|.+++...+..+..|++++....+++..+++.|++++
T Consensus       205 SGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~  284 (537)
T PRK13382        205 SGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDLIDRHR  284 (537)
T ss_pred             CCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECCCcCHHHHHHHHHHhC
Confidence            99999999999999888887777777778889999999999999999887788888888888777889999999999999


Q ss_pred             ceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCCCC
Q 009756          241 VTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEWD  317 (526)
Q Consensus       241 ~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~  317 (526)
                      +|++.++|++++.|.+....  ...+ ++++|.+++||+++++++.+.+. .++.++++.||+||++.+++.+...    
T Consensus       285 vt~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~----  359 (537)
T PRK13382        285 ATGLAVVPVMFDRIMDLPAEVRNRYS-GRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPAD----  359 (537)
T ss_pred             CEEEEehHHHHHHHHcCCchhcccCC-ccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhH----
Confidence            99999999999999876532  1223 57899999999999999999998 5688999999999998765543211    


Q ss_pred             CCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEE
Q 009756          318 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVK  397 (526)
Q Consensus       318 ~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~  397 (526)
                            .....+++|.|++++ .++|+|++ +++++.|  +.|||+++|++++.||+  +..+ ..+.+|||+|||++++
T Consensus       360 ------~~~~~~~vG~p~~~~-~~~i~d~~-~~~~~~g--~~GEl~v~g~~~~~gY~--~~~~-~~~~~g~~~TGDl~~~  426 (537)
T PRK13382        360 ------LRAAPDTAGRPAEGT-EIRILDQD-FREVPTG--EVGTIFVRNDTQFDGYT--SGST-KDFHDGFMASGDVGYL  426 (537)
T ss_pred             ------hccCCCCccccCcCc-EEEEECCC-CCCCCCC--CeeEEEEEcCCcccCcc--ccch-hhccCCCEeeCceEEE
Confidence                  112236899999999 69999987 8898887  79999999999999998  3333 3456899999999999


Q ss_pred             cCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHH
Q 009756          398 HPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKF  477 (526)
Q Consensus       398 ~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  477 (526)
                      ++||++++.||.||+||.+|.+|+|.+||..|.++|+|.+++|++.++...++.++++|++.++...     ..++++++
T Consensus       427 ~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~-----~~~~l~~~  501 (537)
T PRK13382        427 DENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASA-----TPETLKQH  501 (537)
T ss_pred             eCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCC-----CHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998888999999998766433     56889999


Q ss_pred             HHhcCCCccCCcEEEecc-ccCCCCccccHHHHHH
Q 009756          478 CRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA  511 (526)
Q Consensus       478 l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~  511 (526)
                      ++++|+.+++|..+.+++ ||+|++||++|++|++
T Consensus       502 l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~  536 (537)
T PRK13382        502 VRDNLANYKVPRDIVVLDELPRGATGKILRRELQA  536 (537)
T ss_pred             HHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence            999999999999999888 9999999999999864

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.1e-65  Score=523.49  Aligned_cols=490  Identities=29%  Similarity=0.511  Sum_probs=401.3

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.||.++++++|.+ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++.++++++++
T Consensus        42 y~el~~~~~~~a~~-L---~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~  117 (539)
T PRK07008         42 YRDCERRAKQLAQA-L---AALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLF  117 (539)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+.+......       ..+.++.+.+......     ......++++++......... ...+++++++++||
T Consensus       118 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~i~~T  184 (539)
T PRK07008        118 DLTFLPLVDALAPQCP-------NVKGWVAMTDAAHLPA-----GSTPLLCYETLVGAQDGDYDW-PRFDENQASSLCYT  184 (539)
T ss_pred             cchhHHHHHHHHhhCC-------CceEEEEEccCCcccc-----CCcccccHHHHhcccCCCcCc-ccCCcccceEEEEC
Confidence            9887766655544433       3445555543321000     112345677766543322211 23466789999999


Q ss_pred             CCCCCCccceeecchhHHHHHH--hhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-cccCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSL--NGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~  237 (526)
                      |||||.||+|++||.++.....  .....+++.++++++...|++|..++...+.++..|+++++. ..+++..+++.++
T Consensus       185 SGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~  264 (539)
T PRK07008        185 SGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIE  264 (539)
T ss_pred             CCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhcCceEEEecCCcCHHHHHHHHH
Confidence            9999999999999999765432  233456788899999999999988877667777788887776 3578999999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEW  316 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~  316 (526)
                      ++++|++.++|+.+..+.+........ ++++|.++++|+++++++.+.+. .++.++++.||+||++..++.+......
T Consensus       265 ~~~vt~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~  343 (539)
T PRK07008        265 AERVTFSAGVPTVWLGLLNHMREAGLR-FSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKH  343 (539)
T ss_pred             HcCCEEEEechHHHHHHHhcccccCCC-cccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceeccccccc
Confidence            999999999999999999876555555 88999999999999999999997 5699999999999998766544322111


Q ss_pred             CCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeE
Q 009756          317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAV  396 (526)
Q Consensus       317 ~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~  396 (526)
                      ...+.........++|.|+|++ .++|+|++ +..++.++++.|||+++|+.++.||++++.   ..+.+|||+|||+++
T Consensus       344 ~~~~~~~~~~~~~~~G~p~pg~-~~~i~d~~-~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~  418 (539)
T PRK07008        344 SQLPLDEQRKLLEKQGRVIYGV-DMKIVGDD-GRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVAT  418 (539)
T ss_pred             ccCCchhhhhhcccCCccccce-EEEEECCC-CCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCceEE
Confidence            1111111112236789999999 69999976 888887654689999999999999999873   345689999999999


Q ss_pred             EcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHH
Q 009756          397 KHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK  476 (526)
Q Consensus       397 ~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  476 (526)
                      +++||.+++.||.+|+|+.+|.+++|.+||..+..+|.|.+++|++.++...++.++++|+..++...     ..+++++
T Consensus       419 ~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~  493 (539)
T PRK07008        419 IDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEV-----TREELLA  493 (539)
T ss_pred             EcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCcc-----CHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888889999887765443     4578999


Q ss_pred             HHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          477 FCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       477 ~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      +++++++.|++|..+.+++ ||+|++||++|++|++++.+-..
T Consensus       494 ~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~~~~  536 (539)
T PRK07008        494 FYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRDYVL  536 (539)
T ss_pred             HHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHhhcc
Confidence            9999999999999999888 99999999999999999987543

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-64  Score=521.90  Aligned_cols=486  Identities=35%  Similarity=0.559  Sum_probs=421.6

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||+++++++|+. |   .+.|+++|++|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        34 y~~l~~~~~~~a~~-L---~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~  109 (521)
T PRK06187         34 YAELDERVNRLANA-L---RALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLV  109 (521)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEE
Confidence            78999999999999 9   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +.+....+.+.....+       ..+.++.+++....      .......++.+++......... .....+++++++||
T Consensus       110 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~T  175 (521)
T PRK06187        110 DSEFVPLLAAILPQLP-------TVRTVIVEGDGPAA------PLAPEVGEYEELLAAASDTFDF-PDIDENDAAAMLYT  175 (521)
T ss_pred             cchHHHHHHHHhhccC-------CccEEEEecCcccc------ccccccccHHHHhhcCCccCCC-CCCCccceEEEEEC
Confidence            9988777776665544       35567666554311      1223456777776654433322 23566789999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG  240 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  240 (526)
                      |||||.||+|.+||.++..........++++.++++++.+|++|..++...+.++..|+++++.+..++..+++.+++++
T Consensus       176 SGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~  255 (521)
T PRK06187        176 SGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENLLDLIETER  255 (521)
T ss_pred             CCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhC
Confidence            99999999999999999988888888889999999999999999999888778888888888887789999999999999


Q ss_pred             ceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhc-CCeeecccccccCCCCccccccCCCCCCC
Q 009756          241 VTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSL  319 (526)
Q Consensus       241 ~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~  319 (526)
                      +|.++++|++++.|.......... ++++|.+++|||++++++.+.+.+. ++++++.||+||+++++..+........ 
T Consensus       256 ~t~l~~~p~~~~~l~~~~~~~~~~-~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~-  333 (521)
T PRK06187        256 VTFFFAVPTIWQMLLKAPRAYFVD-FSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPG-  333 (521)
T ss_pred             CeEEEchHHHHHHHHcCcCCCccC-cchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCccccccc-
Confidence            999999999999999988765555 8899999999999999999999854 9999999999999876665433221100 


Q ss_pred             CcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcC
Q 009756          320 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP  399 (526)
Q Consensus       320 ~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~  399 (526)
                          ......++|.|.+++ .++|+|++ +.+++.+.++.|||+++|+.++.||+++++.+...|.++||+|||++++++
T Consensus       334 ----~~~~~~~~G~~~~~~-~~~i~~~~-~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~  407 (521)
T PRK06187        334 ----QWTKRRSAGRPLPGV-EARIVDDD-GDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDE  407 (521)
T ss_pred             ----ccccCCccccccCCe-EEEEECCC-CCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcC
Confidence                112347899999999 69999987 888888434899999999999999999999999999999999999999999


Q ss_pred             CceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHH
Q 009756          400 DNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCR  479 (526)
Q Consensus       400 ~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~  479 (526)
                      +|.+++.||.+|+++.+|.+++|.+||+.+.++++|.+++|++.+++..++.+.++++..++...     ..++++++++
T Consensus       408 ~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~l~  482 (521)
T PRK06187        408 DGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATL-----DAKELRAFLR  482 (521)
T ss_pred             CCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCC-----CHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988888999999998776544     4678999999


Q ss_pred             hcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          480 AKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       480 ~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                      ++++.+.+|..+.+++ ||+|++||++|..|++++.+.+
T Consensus       483 ~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~~~  521 (521)
T PRK06187        483 GRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEGK  521 (521)
T ss_pred             HhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhcCC
Confidence            9999999999999888 9999999999999999998753

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-64  Score=521.08  Aligned_cols=487  Identities=26%  Similarity=0.372  Sum_probs=403.6

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|.. |   ++.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++
T Consensus        35 y~el~~~~~~~a~~-L---~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~  110 (528)
T PRK07470         35 WREIDARVDALAAA-L---AARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMIC  110 (528)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++.............       ....++.++...            ...++.+++..............++++++++||
T Consensus       111 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T  171 (528)
T PRK07470        111 HADFPEHAAAVRAASP-------DLTHVVAIGGAR------------AGLDYEALVARHLGARVANAAVDHDDPCWFFFT  171 (528)
T ss_pred             cchhHHHHHHHHhhCC-------cCceEEEeCCCc------------ccccHHHHHhcCCCCCCCcccCCCCCeEEEEeC
Confidence            9877655554433332       345566664421            123555555443222222223467899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHh--CCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec--ccCHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIW--GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR--QVTAKAVYTAI  236 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~i  236 (526)
                      |||||.||+|.++|.++...+......+  +...+++++...|++|..++... ..+..|++.++.+  .++++.+++.+
T Consensus       172 SGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~i  250 (528)
T PRK07470        172 SGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQL-CQVARGAATVLLPSERFDPAEVWALV  250 (528)
T ss_pred             CCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHH-HHHhcCceEEEecccCcCHHHHHHHH
Confidence            9999999999999999876554433322  46788999999999999888654 3566777776664  47899999999


Q ss_pred             HhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCC
Q 009756          237 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       237 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      +++++|++.++|++++.+.+........ ++++|.+++||++++++..+++. .++.++++.||+||+++.++.+.....
T Consensus       251 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~  329 (528)
T PRK07470        251 ERHRVTNLFTVPTILKMLVEHPAVDRYD-HSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALH  329 (528)
T ss_pred             HhcCCeEEechHHHHHHHHhCcCcCCCC-CcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhc
Confidence            9999999999999999998876555545 78999999999999999998887 568899999999999876554321100


Q ss_pred             CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCcee
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLA  395 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~  395 (526)
                       . .. .......+++|.|.+++ .++++|++ +.+++.|  +.|||+++|+.++.||++++..+...|.+|||+|||++
T Consensus       330 -~-~~-~~~~~~~~~~G~~~~g~-~~~i~d~~-~~~~~~g--~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~  402 (528)
T PRK07470        330 -D-AE-DGPDARIGTCGFERTGM-EVQIQDDE-GRELPPG--ETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLG  402 (528)
T ss_pred             -c-cc-ccccceeeccCcccCCc-EEEEECCC-CCCCCCC--CceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeE
Confidence             0 00 00122346889999999 59999976 8888887  79999999999999999999999999999999999999


Q ss_pred             EEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHH
Q 009756          396 VKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVS  475 (526)
Q Consensus       396 ~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~  475 (526)
                      +++++|++++.||.||+++++|.+++|.+||.++.+++.|.+++|++.+++..++.+.++++..++...     ..++++
T Consensus       403 ~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  477 (528)
T PRK07470        403 HLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPV-----DEAELL  477 (528)
T ss_pred             EEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCC-----CHHHHH
Confidence            999999999999999999999999999999999999999999999999998888888888887765433     457899


Q ss_pred             HHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCCcccccc
Q 009756          476 KFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPVKMIKG  524 (526)
Q Consensus       476 ~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~~~~~~  524 (526)
                      ++++++|+.+++|..+.+++ ||+|++||++|+.|++++.++.+.++-+.
T Consensus       478 ~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~~~~~~  527 (528)
T PRK07470        478 AWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEERGLLDLERA  527 (528)
T ss_pred             HHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhccccccccC
Confidence            99999999999999999888 99999999999999999999988766544

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=1.4e-64  Score=522.52  Aligned_cols=475  Identities=25%  Similarity=0.361  Sum_probs=398.3

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++.++++++|+
T Consensus        53 y~el~~~~~~la~~-L---~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~  128 (537)
T PLN02246         53 YADVELLSRRVAAG-L---HKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIIT  128 (537)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      ++.....+.+....         ....++.++...           .+..++.++......... .....++++++++||
T Consensus       129 ~~~~~~~~~~~~~~---------~~~~~i~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~T  187 (537)
T PLN02246        129 QSCYVDKLKGLAED---------DGVTVVTIDDPP-----------EGCLHFSELTQADENELP-EVEISPDDVVALPYS  187 (537)
T ss_pred             ccchHHHHHHHhhc---------CCceEEEeCCCC-----------CCceeHHHHhcCCCCCCC-CCCCCccCEEEEEeC
Confidence            98776665544321         123455554321           123455555543322211 223467899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHh----HhCCcCCcEEEEecccccchhhHHH-HHHHhhcceeeeecccCHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGAL----IWGMNEGAVFLWTLPMFHGNGWSYT-WSLAALCGTSICLRQVTAKAVYTA  235 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~  235 (526)
                      |||||.||+|+++|+++.........    .+.+..++++++.+|++|.+++... +..+..|+++++.+..++..+++.
T Consensus       188 SGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~  267 (537)
T PLN02246        188 SGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLEL  267 (537)
T ss_pred             CCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHH
Confidence            99999999999999998877665433    4568899999999999999988654 445666777777777899999999


Q ss_pred             HHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCccccccC
Q 009756          236 IATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWK  313 (526)
Q Consensus       236 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~  313 (526)
                      ++++++|++.++|+++..|.+........ ++++|.+++||+++++++.+.+.+ + +..+++.||+||++.+++.+...
T Consensus       268 i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~  346 (537)
T PLN02246        268 IQRHKVTIAPFVPPIVLAIAKSPVVEKYD-LSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAF  346 (537)
T ss_pred             HHHhCceEEEcchHHHHHHhcCccccccC-ccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCccccccccc
Confidence            99999999999999999998876544444 789999999999999999999985 4 78899999999998765543211


Q ss_pred             CCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeecC
Q 009756          314 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSG  392 (526)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tG  392 (526)
                      .. .     .......++|.|++++ +++|+|++++.+++.|  +.|||+++|+.++.||++++..+...|. +|||+||
T Consensus       347 ~~-~-----~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TG  417 (537)
T PLN02246        347 AK-E-----PFPVKSGSCGTVVRNA-ELKIVDPETGASLPRN--QPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTG  417 (537)
T ss_pred             CC-C-----CccccCCccccccCCc-EEEEecCCCCCcCCCC--CceEEEEECCchhccccCCchhhhhcccCCCCeeec
Confidence            00 0     0111236789999999 6999998779999988  7899999999999999999999988884 8899999


Q ss_pred             ceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHH
Q 009756          393 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAE  472 (526)
Q Consensus       393 D~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  472 (526)
                      |+++++++|.+++.||.||+|+.+|.+|+|.+||..+.++|+|.+++|++.++...++.++++++..++...     ..+
T Consensus       418 D~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----~~~  492 (537)
T PLN02246        418 DIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEI-----TED  492 (537)
T ss_pred             ceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCC-----CHH
Confidence            999999999999999999999999999999999999999999999999999988888899999988766433     457


Q ss_pred             HHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          473 DVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       473 ~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                      +++++++++++.+++|..+.+++ ||+|++||++|+.|++++.+
T Consensus       493 ~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~  536 (537)
T PLN02246        493 EIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA  536 (537)
T ss_pred             HHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence            89999999999999999999888 99999999999999998764

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=2.2e-65  Score=536.91  Aligned_cols=489  Identities=21%  Similarity=0.257  Sum_probs=373.9

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .++|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.++|++++++++|+
T Consensus        80 y~el~~~v~~lA~~-L---~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~  155 (660)
T PLN02861         80 YKEVYDAAIRIGSA-I---RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFV  155 (660)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+.......+      ...+.++.+++.................+|.+++....... ...+..++|+++|+||
T Consensus       156 ~~~~~~~~~~~~~~~~------~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dd~a~i~yT  228 (660)
T PLN02861        156 QESKISSILSCLPKCS------SNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDC-ELPPKQKTDICTIMYT  228 (660)
T ss_pred             CHHHHHHHHHhhhhCC------CCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcccC-CCCccCCCceEEEEec
Confidence            8776554443333221      02456776654211000000001112356777765443221 1123467899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhC-----CcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWG-----MNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTA  235 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  235 (526)
                      |||||.||||++||.++++.+......+.     +..+|++++.+|++|.+++...+.++..|+++++. ..++..+++.
T Consensus       229 SGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~-~~~~~~~~~~  307 (660)
T PLN02861        229 SGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFW-QGDIRYLMED  307 (660)
T ss_pred             CCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEe-CCCHHHHHHH
Confidence            99999999999999999888766554433     46789999999999999987666667777776655 4688999999


Q ss_pred             HHhcCceeeeccHHHHHHHHccC------------------------------CC---C-CCC---------CC-Cceee
Q 009756          236 IATHGVTHFCAAPVVLNAIANAS------------------------------PE---D-TIL---------PL-TNVVN  271 (526)
Q Consensus       236 i~~~~~t~l~~~P~~~~~l~~~~------------------------------~~---~-~~~---------~l-~~lr~  271 (526)
                      |++++||+++++|++++.|....                              ..   . ..+         .+ .++|.
T Consensus       308 i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~  387 (660)
T PLN02861        308 VQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRL  387 (660)
T ss_pred             HHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEE
Confidence            99999999999999999886410                              00   0 000         01 57999


Q ss_pred             EeccCCCCCHHHHHHHhhcCC-eeecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecC-CCC
Q 009756          272 VNTAGAPPPPSLLFAMSQKGF-RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDA-RTN  349 (526)
Q Consensus       272 ~~~~Ge~l~~~~~~~~~~~~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~-~~g  349 (526)
                      +++||+++++++.+.++.++. .+++.||+||+++.++.....          .....+++|.|++++ +++++|. ++|
T Consensus       388 ~~~Ggapl~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~----------~~~~~gsvG~p~p~~-ev~i~d~~~~g  456 (660)
T PLN02861        388 LLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIAN----------VFSMVGTVGVPMTTI-EARLESVPEMG  456 (660)
T ss_pred             EEECCCCCCHHHHHHHHHHcCCCeeEecchhhhhhceeecccc----------cCCCCCCccCccCce-EEEEEEccccC
Confidence            999999999998765555554 799999999997655432111          011237899999999 6999983 324


Q ss_pred             C-ccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCCceEEEeccccceeee-CCeeechHHHHH
Q 009756          350 Q-PVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIIS-GGENISSVEVEK  427 (526)
Q Consensus       350 ~-~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~-~G~~v~~~~ie~  427 (526)
                      . ..+.+  +.|||+++|++++.||+++++.+.+.|.+|||+|||+|++++||++++.||.||+||. +|++|+|.+||.
T Consensus       457 ~~~~~~~--~~GEi~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~  534 (660)
T PLN02861        457 YDALSDV--PRGEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLEN  534 (660)
T ss_pred             cccCCCC--CceeEEEcCCcccccccCCHHHHHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHH
Confidence            2 22333  5799999999999999999999999999999999999999999999999999999995 899999999999


Q ss_pred             HHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCch---------hhh------hhhHHHHHHHHHh-----cCCCccC
Q 009756          428 VLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE---------LDK------GKLAEDVSKFCRA-----KMPSYWV  487 (526)
Q Consensus       428 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---------~~~------~~~~~~l~~~l~~-----~l~~~~~  487 (526)
                      ++.++|.|.+++|++.+.   ++.++|+|++....-.         .+.      ......+.+.+++     .++.+.+
T Consensus       535 ~l~~~p~V~~a~V~G~~~---~~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~  611 (660)
T PLN02861        535 TYSRCPLIASIWVYGNSF---ESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEM  611 (660)
T ss_pred             HHhcCCCeeEEEEEecCC---cceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcce
Confidence            999999999999999873   3568899887633100         000      0112233333332     4888999


Q ss_pred             CcEEEecc--c-----cCCCCccccHHHHHHHHHhcC
Q 009756          488 PKSVVFAA--L-----PKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       488 p~~~~~~~--l-----P~t~~GKv~r~~l~~~~~~~~  517 (526)
                      ++.+.+.+  +     .+|+++|+.|+.+.+.|.+..
T Consensus       612 i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I  648 (660)
T PLN02861        612 LKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCI  648 (660)
T ss_pred             eeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHH
Confidence            99888754  7     799999999999999998654

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.6e-64  Score=531.86  Aligned_cols=487  Identities=18%  Similarity=0.223  Sum_probs=382.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.+++.++|++ |   +++|+++||+|++++||++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus       211 y~eL~~~v~~lA~~-L---~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit  286 (728)
T PLN03052        211 LSELRSQVSRVANA-L---DALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFT  286 (728)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchH------HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCC---cCC-CCCCC
Q 009756           81 DQEFF------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE---FAW-KPPED  150 (526)
Q Consensus        81 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-~~~~~  150 (526)
                      ++...      +.........         ...++.+........ .  .......+|++++......   ... .....
T Consensus       287 ~d~~~~~gk~~~~~~~~~~~~---------~~~~iv~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (728)
T PLN03052        287 QDVIVRGGKSIPLYSRVVEAK---------APKAIVLPADGKSVR-V--KLREGDMSWDDFLARANGLRRPDEYKAVEQP  354 (728)
T ss_pred             cCccccCCcccchHHHHHHhc---------CCcEEEEeCCCCccc-c--ccccCCccHHHHHhccccccccccccccccC
Confidence            87532      2222222211         123444433211000 0  0011235677776543211   011 11135


Q ss_pred             CCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc-cCH
Q 009756          151 EWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ-VTA  229 (526)
Q Consensus       151 ~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~  229 (526)
                      ++++++|+|||||||.||||+++|.+++.........++++++|++++..+++|+.+....+.+++.|++++++.. .++
T Consensus       355 ~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~  434 (728)
T PLN03052        355 VEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLG  434 (728)
T ss_pred             CCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCC
Confidence            6899999999999999999999999887776666666788999999999999999988777788888998888853 456


Q ss_pred             HHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-cC-CeeecccccccCCCCc
Q 009756          230 KAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KG-FRITHTYGLTELTGPA  307 (526)
Q Consensus       230 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~-~~i~~~YG~tE~~~~~  307 (526)
                      ..+++.++++++|++.++|++++.|.+.......+ +++||.++++||+++++...++.. .+ .++.+.||+||+++.+
T Consensus       435 ~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~d-lssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~  513 (728)
T PLN03052        435 RGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLD-WSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGF  513 (728)
T ss_pred             ChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCC-hhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCccc
Confidence            78999999999999999999999998875444445 899999999999999998877763 34 5799999999997654


Q ss_pred             cccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccc--cccccCChhhhhhhhc
Q 009756          308 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV--MKGYLKNPKANEEAFA  385 (526)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~--~~gy~~~~~~~~~~~~  385 (526)
                      .....  .        .....+++|.|.+++ +++|+|++ |++++.|..+.|||+++++..  ..+|+++.. ...-|.
T Consensus       514 ~~~~~--~--------~~~~~g~~g~p~~g~-~v~v~d~~-g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~  580 (728)
T PLN03052        514 VTGSL--L--------QPQAFAAFSTPAMGC-KLFILDDS-GNPYPDDAPCTGELALFPLMFGASSTLLNADH-YKVYFK  580 (728)
T ss_pred             ccCCC--C--------CCCCCCccccCCCCc-eEEEECCC-CCCCCCCCCceEEEEEeCCCCCCCccccCchh-hhhhhh
Confidence            33211  0        011236789999999 59999976 999988632369999986533  345666532 222231


Q ss_pred             -----CC--eeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHH-cCCCeeeeEEEEcCCCCCC-ceeEEEE
Q 009756          386 -----NG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLY-LHPLVLEAAVVARPDERWG-ESPCAFV  456 (526)
Q Consensus       386 -----~g--~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v  456 (526)
                           .|  ||+|||++++++||.++++||+||+||++|++|+|.|||.++. .+|.|.+++|++.+++..| +.+++||
T Consensus       581 ~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afV  660 (728)
T PLN03052        581 GMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAA  660 (728)
T ss_pred             cCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEE
Confidence                 23  8999999999999999999999999999999999999999995 7899999999999988766 8899999


Q ss_pred             Eec--CCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          457 TLK--PEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       457 ~~~--~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      ++.  ++... +.++..+.+++.++++|+++.+|+.|++++ ||+|++||++|+.|++++.+..+
T Consensus       661 vl~~~~g~~~-~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~~~~  724 (728)
T PLN03052        661 VLKDPPGSNP-DLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQELS  724 (728)
T ss_pred             EEecCCCCCC-CHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHHHHHHHhhhh
Confidence            987  33321 223467788888999999999999999988 99999999999999999987654

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.6e-64  Score=519.04  Aligned_cols=475  Identities=31%  Similarity=0.478  Sum_probs=404.5

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||++++.++|.. |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        33 y~~l~~~~~~~a~~-L---~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~  108 (513)
T PRK07656         33 YAELNARVRRAAAA-L---AALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFV  108 (513)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++.............       ....++.+.......      ......+|++++....... ......++++++++||
T Consensus       109 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~T  174 (513)
T PRK07656        109 LGLFLGVDYSATTRLP-------ALEHVVICETEEDDP------HTEKMKTFTDFLAAGDPAE-RAPEVDPDDVADILFT  174 (513)
T ss_pred             chhhHHHHHHHHhccC-------CccEEEEEcCccccc------CccccccHHHHHhcCCCCC-CcCCCCCCceEEEEeC
Confidence            9887666655543333       345555554432211      0012346677665443311 1223577899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecccCHHHHHHHHHhc
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQVTAKAVYTAIATH  239 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  239 (526)
                      |||||.||+|.++|.++...+......+++++++++++..|++|.+++.. .+.++..|++++.....++..+++.++++
T Consensus       175 SGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~  254 (513)
T PRK07656        175 SGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETE  254 (513)
T ss_pred             CCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHh
Confidence            99999999999999999988888888889999999999999999998765 45556667766666778899999999999


Q ss_pred             CceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCC-eeecccccccCCCCccccccCCCCC
Q 009756          240 GVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGF-RITHTYGLTELTGPASVCAWKPEWD  317 (526)
Q Consensus       240 ~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~-~i~~~YG~tE~~~~~~~~~~~~~~~  317 (526)
                      ++|++.++|+++..|.+........ ++++|.+++||+++++++.+.+. .++. .+++.||+||++++++.+.......
T Consensus       255 ~~t~~~~~p~~~~~l~~~~~~~~~~-~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~  333 (513)
T PRK07656        255 RITVLPGPPTMYNSLLQHPDRSAED-LSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRK  333 (513)
T ss_pred             CCeEEechHHHHHHHHcCCCcCCCC-ccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCcccccc
Confidence            9999999999999999987665555 88999999999999999999997 5688 8999999999988777654322111


Q ss_pred             CCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeecCceeE
Q 009756          318 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAV  396 (526)
Q Consensus       318 ~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~  396 (526)
                              ....++|.|.+++ .++|+|+. +++++.|  +.|||+++|+.++.||++++..+...+. +|||+|||+|+
T Consensus       334 --------~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~  401 (513)
T PRK07656        334 --------TVAGTIGTAIAGV-ENKIVNEL-GEEVPVG--EVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGR  401 (513)
T ss_pred             --------ccCCCccccCCCc-EEEEECCC-CCCCCCC--CceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEE
Confidence                    1136899999999 59999976 8999887  7899999999999999999988888887 89999999999


Q ss_pred             EcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHH
Q 009756          397 KHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK  476 (526)
Q Consensus       397 ~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  476 (526)
                      ++++|.+++.||.||+++++|.+++|.+||+.|.++++|.+++|++.++...++.+.++++.+++...     ..+++.+
T Consensus       402 ~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~-----~~~~l~~  476 (513)
T PRK07656        402 LDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAEL-----TEEELIA  476 (513)
T ss_pred             EcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCC-----CHHHHHH
Confidence            99999999999999999999999999999999999999999999999988888999999998754333     4578999


Q ss_pred             HHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHH
Q 009756          477 FCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA  511 (526)
Q Consensus       477 ~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~  511 (526)
                      +++++|+.+++|..+.+++ ||+|++||++|+.|++
T Consensus       477 ~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~  512 (513)
T PRK07656        477 YCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE  512 (513)
T ss_pred             HHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence            9999999999999999888 9999999999999975

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-64  Score=523.01  Aligned_cols=484  Identities=27%  Similarity=0.362  Sum_probs=402.3

Q ss_pred             CccchhhhhhcccccccCccCC-CCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLF-PSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~-g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.+++.++|++ |   .+. |+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|
T Consensus        38 y~~l~~~v~~~a~~-L---~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii  113 (546)
T PRK08314         38 YRELLEEAERLAGY-L---QQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAI  113 (546)
T ss_pred             HHHHHHHHHHHHHH-H---HHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEE
Confidence            78999999999999 9   888 999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCc--------------hhhhhhhhcCcccHHHHHhhCCCCcCC
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDS--------------KQLEYALARGAIEYEKFLETGDPEFAW  145 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~~~  145 (526)
                      ++++....+........        .+.++.........              .........++..+++.+......  .
T Consensus       114 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  183 (546)
T PRK08314        114 VGSELAPKVAPAVGNLR--------LRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAP--P  183 (546)
T ss_pred             EccchhhhHHHHhhccC--------cceEEEecchhhcccccccCcccccccccccccccccccccHHHHhcccCCC--C
Confidence            99887766655433221        23333321100000              000001122445666665543211  1


Q ss_pred             CCCCCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeee
Q 009756          146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICL  224 (526)
Q Consensus       146 ~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~  224 (526)
                      .....++++++++|||||||.||+|.++|.+++..+......+++..+|++++.+|++|..++.. .+.++..|+++++.
T Consensus       184 ~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~  263 (546)
T PRK08314        184 PHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLM  263 (546)
T ss_pred             CCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEec
Confidence            22356789999999999999999999999999998888777888999999999999999999754 45667778888888


Q ss_pred             cccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccC
Q 009756          225 RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTEL  303 (526)
Q Consensus       225 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~  303 (526)
                      +.+++..+++.++++++|++.++|.++..+.......... ++++|.+++||+++++++.+++. .++.++++.||+||+
T Consensus       264 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~-~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~  342 (546)
T PRK08314        264 PRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERD-LSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTET  342 (546)
T ss_pred             CCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccC-chhhheeeeccccCCHHHHHHHHHHcCCcEEeccccccc
Confidence            8889999999999999999999999999988765544444 78999999999999999999988 569999999999999


Q ss_pred             CCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhh
Q 009756          304 TGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEA  383 (526)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~  383 (526)
                      +.........           .....++|.|++++ +++|+|++++.+++.+  +.|||+++|++++.||++++..+...
T Consensus       343 ~~~~~~~~~~-----------~~~~~~~G~~~~g~-~~~i~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~  408 (546)
T PRK08314        343 MAQTHSNPPD-----------RPKLQCLGIPTFGV-DARVIDPETLEELPPG--EVGEIVVHGPQVFKGYWNRPEATAEA  408 (546)
T ss_pred             ccceecCCCc-----------CCCCCccCcccCCe-EEEEEeCCCCcCCCCC--CceEEEEECCchhccccCChhHhhhh
Confidence            7655432110           11236799999999 6999998889999988  78999999999999999999988888


Q ss_pred             hc----CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEec
Q 009756          384 FA----NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLK  459 (526)
Q Consensus       384 ~~----~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  459 (526)
                      |.    ++||+|||+|+++++|.+++.||.||+|+++|.+|+|.+||.++.++++|.+++|++.++...++.++++++..
T Consensus       409 f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~  488 (546)
T PRK08314        409 FIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLR  488 (546)
T ss_pred             hhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEEC
Confidence            74    25999999999999999999999999999999999999999999999999999999999988889999999988


Q ss_pred             CCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          460 PEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       460 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      ++.....   ..++++++++++|+.+++|+.+.+++ ||+|.+||++|+.|++..+..
T Consensus       489 ~~~~~~~---~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~~~~~  543 (546)
T PRK08314        489 PEARGKT---TEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKAR  543 (546)
T ss_pred             CCCCCCC---CHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHhhh
Confidence            7643211   34789999999999999999999988 999999999999999877654

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.4e-64  Score=523.04  Aligned_cols=485  Identities=25%  Similarity=0.357  Sum_probs=391.1

Q ss_pred             CccchhhhhhcccccccCccC-CCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLL-FPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~-~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.++++++|++ |   .+ .|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|
T Consensus        52 y~el~~~~~~la~~-L---~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii  127 (562)
T PRK05677         52 YGELYKLSGAFAAW-L---QQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALV  127 (562)
T ss_pred             HHHHHHHHHHHHHH-H---HHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEE
Confidence            78999999999999 8   76 6999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCc---h------------hhhhhhhcCcccHHHHHhhCCCCcC
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDS---K------------QLEYALARGAIEYEKFLETGDPEFA  144 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~------------~~~~~~~~~~~~~~~~l~~~~~~~~  144 (526)
                      ++++....+.+.....        ..+.++..+......   .            .......++...+.+.+........
T Consensus       128 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (562)
T PRK05677        128 CLANMAHLAEKVLPKT--------GVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPV  199 (562)
T ss_pred             EecchhhhHHHhhhcc--------CcceeEEecccccccchhhhhcccchhhccccccccCCcccccHHHHHhcCCCCCC
Confidence            9887666555443221        133333322110000   0            0000001123445555544332221


Q ss_pred             CCCCCCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhC--CcC-CcEEEEecccccchhhHHHHH-HHhhcce
Q 009756          145 WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG--MNE-GAVFLWTLPMFHGNGWSYTWS-LAALCGT  220 (526)
Q Consensus       145 ~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~-~~~~~~~~p~~~~~~~~~~~~-~~~~g~~  220 (526)
                      ......++++++++|||||||.||+|+++|.++..........+.  +.. .+++++.+|++|..++...+. .+..|++
T Consensus       200 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~  279 (562)
T PRK05677        200 TEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNH  279 (562)
T ss_pred             CCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCe
Confidence            122346789999999999999999999999998877665554443  333 367889999999998864444 4445665


Q ss_pred             eeeec-ccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-cCCeeeccc
Q 009756          221 SICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTY  298 (526)
Q Consensus       221 ~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~Y  298 (526)
                      .++.+ ..++..+++.++++++|+++++|+.+..+.......... ++++|.+++||+++++++.+.+.+ +++++++.|
T Consensus       280 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~Y  358 (562)
T PRK05677        280 NILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLD-FSALKLTLSGGMALQLATAERWKEVTGCAICEGY  358 (562)
T ss_pred             EEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCC-hhhceEEEEcCccCCHHHHHHHHHHcCCCeeccC
Confidence            55554 468899999999999999999999999998765444444 679999999999999999999884 589999999


Q ss_pred             ccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChh
Q 009756          299 GLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPK  378 (526)
Q Consensus       299 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~  378 (526)
                      |+||+++++......           ....+++|.|++++ +++|+|++ +.+++.|  +.|||+++|+.++.||+++++
T Consensus       359 G~tE~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~v~i~d~~-~~~~~~g--~~Gel~v~g~~~~~gY~~~~~  423 (562)
T PRK05677        359 GMTETSPVVSVNPSQ-----------AIQVGTIGIPVPST-LCKVIDDD-GNELPLG--EVGELCVKGPQVMKGYWQRPE  423 (562)
T ss_pred             CccccCcceeecCcc-----------CCCCCccCccCCCC-EEEEECCC-CCCCCCC--CCeEEEEecCccchhhcCCch
Confidence            999998665443211           11126799999999 69999987 8889888  799999999999999999999


Q ss_pred             hhhhhhc-CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEE
Q 009756          379 ANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVT  457 (526)
Q Consensus       379 ~~~~~~~-~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~  457 (526)
                      .+...|. +|||+|||+|+++++|.+++.||.+|+|+.+|.+|+|.+||..|.++++|.+++|++.+++..++.++++++
T Consensus       424 ~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~  503 (562)
T PRK05677        424 ATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVV  503 (562)
T ss_pred             hhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEE
Confidence            9998885 899999999999999999999999999999999999999999999999999999999999888889999998


Q ss_pred             ecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          458 LKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       458 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      ..++...     ..+++++++++.|+.|++|..+.+++ ||+|++||++|++|++++.++..
T Consensus       504 ~~~~~~~-----~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~~~  560 (562)
T PRK05677        504 VKPGETL-----TKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKKAG  560 (562)
T ss_pred             eCCCCCC-----CHHHHHHHHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHHHHHhcc
Confidence            7765433     45789999999999999999999988 99999999999999998876544

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.3e-64  Score=519.62  Aligned_cols=497  Identities=55%  Similarity=0.960  Sum_probs=407.7

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.+++.++|.+ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        46 y~~L~~~~~~~a~~-L---~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~  121 (545)
T PRK08162         46 WAETYARCRRLASA-L---ARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIV  121 (545)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEE
Confidence            78999999999999 9   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+.+.....+        ....+.++......   ......+..+++.++....+......+.+.+++++++||
T Consensus       122 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T  190 (545)
T PRK08162        122 DTEFAEVAREALALLP--------GPKPLVIDVDDPEY---PGGRFIGALDYEAFLASGDPDFAWTLPADEWDAIALNYT  190 (545)
T ss_pred             ccchhhHHHHHHhhCC--------CCceEEEecCcccc---ccCCCcccccHHHHhccCCccccccCCCCCCCeEEEEeC
Confidence            9988777666544332        22233332211000   000112345677776554333332223455689999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG  240 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  240 (526)
                      |||||.||+|+++|.++...+......+.+..++++++.+|++|..++...+...+.+++.++...+++..+++.+++++
T Consensus       191 SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~  270 (545)
T PRK08162        191 SGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHG  270 (545)
T ss_pred             CCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEeCCCCHHHHHHHHHHcC
Confidence            99999999999999988777666666677888899999999999999877777777888888888889999999999999


Q ss_pred             ceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCCCCC
Q 009756          241 VTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLP  320 (526)
Q Consensus       241 ~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~  320 (526)
                      +|++.++|+++..|.+........ +...+.++++|+.+++++.+.+.+.++++++.||+||+++.+..+...+.+...+
T Consensus       271 ~t~~~~~P~~~~~l~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  349 (545)
T PRK08162        271 VTHYCGAPIVLSALINAPAEWRAG-IDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDALP  349 (545)
T ss_pred             CeEEEechHHHHHHHhCccccccC-CccceEEEECCCCCCHHHHHHHHHhCCceeecccccccCcceeecccccccccCC
Confidence            999999999999999765443333 5566778899999999999998877999999999999976666554443333333


Q ss_pred             cccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCC
Q 009756          321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD  400 (526)
Q Consensus       321 ~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~  400 (526)
                      .........+.|.+.+..+.++|+|++++.+++.++++.|||+++|+.++.||++++..+...|.+|||+|||++++++|
T Consensus       350 ~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~d  429 (545)
T PRK08162        350 LDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPD  429 (545)
T ss_pred             ccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCC
Confidence            22222223556776665556889998778888876546799999999999999999999999999999999999999999


Q ss_pred             ceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHh
Q 009756          401 NYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA  480 (526)
Q Consensus       401 g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~  480 (526)
                      |.++++||.+|+++++|.+|+|.+||..|.++|+|.+++|++.++...++.+.+++++.++...     ..+++++++++
T Consensus       430 g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~~  504 (545)
T PRK08162        430 GYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASA-----TEEEIIAHCRE  504 (545)
T ss_pred             ccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCC-----CHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988878899999998866543     45789999999


Q ss_pred             cCCCccCCcEEEeccccCCCCccccHHHHHHHHHhcCC
Q 009756          481 KMPSYWVPKSVVFAALPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       481 ~l~~~~~p~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      .|+.+++|..+.+.+||+|++||++|+.|++++.+...
T Consensus       505 ~l~~~~~P~~~~~~~iP~t~~gK~~r~~l~~~~~~l~~  542 (545)
T PRK08162        505 HLAGFKVPKAVVFGELPKTSTGKIQKFVLREQAKSLKA  542 (545)
T ss_pred             hcccccCCcEEEecccCCCCCcCCcHHHHHHHHhhhhh
Confidence            99999999998876699999999999999999876654

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-64  Score=522.32  Aligned_cols=484  Identities=20%  Similarity=0.244  Sum_probs=382.5

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|+. |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        44 y~el~~~~~~~a~~-L---~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~  119 (540)
T PRK05857         44 YRELVAEVGGLAAD-L---RAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALV  119 (540)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      ++........+.....        ...++.++......            .+...+.....  .......++++++++||
T Consensus       120 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~------------~~~~~~~~~~~--~~~~~~~~~~~a~i~~T  177 (540)
T PRK05857        120 APGSKMASSAVPEALH--------SIPVIAVDIAAVTR------------ESEHSLDAASL--AGNADQGSEDPLAMIFT  177 (540)
T ss_pred             eccchhcccccccccc--------ccceeEeecccccc------------ccccccccccc--ccccCCCCCCeEEEEeC
Confidence            9865432221111111        11233333211000            00000000000  00122466899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhH----hHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGA----LIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAI  236 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i  236 (526)
                      |||||.||+|.++|.++.+......    ..+....+++++..+|++|..++...+..++.|++++ +...++..+++.+
T Consensus       178 SGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v-~~~~~~~~~~~~i  256 (540)
T PRK05857        178 SGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCV-TGGENTTSLLEIL  256 (540)
T ss_pred             CCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHhhcceeEE-ecCCChhHHHHHH
Confidence            9999999999999999877654332    1235567889999999999999888788888888765 4556889999999


Q ss_pred             HhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCC
Q 009756          237 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW  316 (526)
Q Consensus       237 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~  316 (526)
                      +++++|+++++|+++..|.+........ ++++|.+++||++++....+++..++.++++.||+||++.....+..... 
T Consensus       257 ~~~~it~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~-  334 (540)
T PRK05857        257 TTNAVATTCLVPTLLSKLVSELKSANAT-VPSLRLVGYGGSRAIAADVRFIEATGVRTAQVYGLSETGCTALCLPTDDG-  334 (540)
T ss_pred             HhcCcceEEeChHHHHHHHhccccCCCc-CccceEEEEcCccCCchhHHHHHHhCCeeecccCCCcCCceeeecccccc-
Confidence            9999999999999999998876554455 88999999999999988877666779999999999999754332211100 


Q ss_pred             CCCCcccccccccccceeeeecCCceeecCCCCCccCC---CCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCc
Q 009756          317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPA---DGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGD  393 (526)
Q Consensus       317 ~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~---~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD  393 (526)
                       .    ......+++|.|++++ +++|+|++...+++.   ..++.|||+++|+.++.||+++++.+...|.+|||+|||
T Consensus       335 -~----~~~~~~~~~G~~~~g~-~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGD  408 (540)
T PRK05857        335 -S----IVKIEAGAVGRPYPGV-DVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGD  408 (540)
T ss_pred             -c----ccccccCCcCcccCCc-EEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccc
Confidence             0    0011236899999999 699999873333332   123789999999999999999999999999999999999


Q ss_pred             eeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHH
Q 009756          394 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAED  473 (526)
Q Consensus       394 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  473 (526)
                      +|+++++|++++.||.+|+|+++|.+|+|.+||.+|..+|+|.+++|++.++...++.+.++++..+........+..+.
T Consensus       409 lg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~  488 (540)
T PRK05857        409 LLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHT  488 (540)
T ss_pred             eEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998878888888887654333222334567


Q ss_pred             HHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCCc
Q 009756          474 VSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPV  519 (526)
Q Consensus       474 l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~  519 (526)
                      +.+.+++.++++++|+.+.+++ ||+|++||++|+.|++.+.+....
T Consensus       489 ~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~~~~~  535 (540)
T PRK05857        489 IAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATADKAR  535 (540)
T ss_pred             HHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhhccce
Confidence            7778888899999999999988 999999999999999988865443

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=8.1e-64  Score=516.07  Aligned_cols=474  Identities=25%  Similarity=0.334  Sum_probs=396.5

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.+++.++|.. |   .+.|+++|++|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        49 y~el~~~v~~la~~-L---~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~  124 (542)
T PRK06155         49 YAEAARAAAAAAHA-L---AAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVV  124 (542)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +.+....+.+......       ..+.++.++.......       ........+....  .........++++++++||
T Consensus       125 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~a~il~T  188 (542)
T PRK06155        125 EAALLAALEAADPGDL-------PLPAVWLLDAPASVSV-------PAGWSTAPLPPLD--APAPAAAVQPGDTAAILYT  188 (542)
T ss_pred             ChhhHHHHHHhccccc-------CcceEEEecCcccccc-------ccccchhhhcccC--CCCCCCCCCCCCeEEEEEC
Confidence            9877665544322211       2345555554321000       0000000111000  1111122467899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG  240 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  240 (526)
                      |||||.||+|.++|.++..........+++++++++++..|++|..++...+..+..|+++++...+++..+++.+++++
T Consensus       189 SGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~  268 (542)
T PRK06155        189 SGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHG  268 (542)
T ss_pred             CCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhC
Confidence            99999999999999999888777777888999999999999999999887788888888888888889999999999999


Q ss_pred             ceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCCCCCC
Q 009756          241 VTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEWDSL  319 (526)
Q Consensus       241 ~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~  319 (526)
                      +|++.++|+++..|.+........ .+++|.++.+|  +++.+.+.+. .+++++++.||+||++.++..+..       
T Consensus       269 ~t~~~~~p~~~~~l~~~~~~~~~~-~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~-------  338 (542)
T PRK06155        269 ATVTYLLGAMVSILLSQPARESDR-AHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG-------  338 (542)
T ss_pred             CcEEEchHHHHHHHHcCcCccccc-cCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC-------
Confidence            999999999999998876555444 67888877665  5788888887 569999999999999876554211       


Q ss_pred             CcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCc---cccccccCChhhhhhhhcCCeeecCceeE
Q 009756          320 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS---CVMKGYLKNPKANEEAFANGWFHSGDLAV  396 (526)
Q Consensus       320 ~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~g~~~tGD~~~  396 (526)
                           ......+|.+.+++ .++|+|++ +++++.|  +.|||+++|+   .++.||++++..+...|.++||+|||+|+
T Consensus       339 -----~~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~  409 (542)
T PRK06155        339 -----SQRPGSMGRLAPGF-EARVVDEH-DQELPDG--EPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVV  409 (542)
T ss_pred             -----CCCCCCcCccCCCc-eEEEECCC-CCCCCCC--CceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEE
Confidence                 11236789999999 69999977 8899988  7999999998   68999999999999999999999999999


Q ss_pred             EcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHH
Q 009756          397 KHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK  476 (526)
Q Consensus       397 ~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  476 (526)
                      +++||.+++.||.+|+|+++|.+++|.+||.++.++|+|.+++|++.+++..++.+.++++...+...     ...++++
T Consensus       410 ~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~  484 (542)
T PRK06155        410 RDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTAL-----EPVALVR  484 (542)
T ss_pred             EcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCC-----CHHHHHH
Confidence            99999999999999999999999999999999999999999999999998878888888888765544     5678999


Q ss_pred             HHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          477 FCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       477 ~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      +++++++.+++|..+.+++ ||+|++||++|+.|++++.+.+.
T Consensus       485 ~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~~  527 (542)
T PRK06155        485 HCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGVTADT  527 (542)
T ss_pred             HHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhccCCch
Confidence            9999999999999999888 99999999999999998875553

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7e-64  Score=521.38  Aligned_cols=485  Identities=26%  Similarity=0.363  Sum_probs=399.6

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        60 y~ql~~~~~~~A~~-L---~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~  135 (573)
T PRK05605         60 YAELGKQVRRAAAG-L---RALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIV  135 (573)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEe
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhh-----------------hhhhhcCcccHHHHHhhCCCCc
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQL-----------------EYALARGAIEYEKFLETGDPEF  143 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~~  143 (526)
                      ++.....+.++....        ....++.++.........                 ......+..+|.+++.......
T Consensus       136 ~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (573)
T PRK05605        136 WDKVAPTVERLRRTT--------PLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGD  207 (573)
T ss_pred             chhhHHHHHhhhhcc--------ccceeEeeecccccccccccccccccccccccccccccCCCcceeHHHHhhcccccc
Confidence            887666555443322        133444443211000000                 0001224456776655432210


Q ss_pred             ---CCCCCCCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhC-C-cCCcEEEEecccccchhhHHH-HHHHhh
Q 009756          144 ---AWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG-M-NEGAVFLWTLPMFHGNGWSYT-WSLAAL  217 (526)
Q Consensus       144 ---~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~-~-~~~~~~~~~~p~~~~~~~~~~-~~~~~~  217 (526)
                         ........+++++++|||||||.||+|.++|.++...+......+. + ..++++++..|++|.+++... ...+..
T Consensus       208 ~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  287 (573)
T PRK05605        208 GSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSI  287 (573)
T ss_pred             ccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHc
Confidence               1112245789999999999999999999999998877665443332 2 346899999999999887544 445667


Q ss_pred             cceeeeecccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-cCCeeec
Q 009756          218 CGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITH  296 (526)
Q Consensus       218 g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~  296 (526)
                      |++++..+..++..+++.++++++|.+.++|+.++.|.+........ ++++|.+++||++++++..+.+.+ ++.++++
T Consensus       288 g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~  366 (573)
T PRK05605        288 GGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVD-LSGVRNAFSGAMALPVSTVELWEKLTGGLLVE  366 (573)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCC-chhccEEEECCCcCCHHHHHHHHHHhCCCeec
Confidence            77777777789999999999999999999999999999877665555 889999999999999999999884 5899999


Q ss_pred             ccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCC-CCccCCCCCceEEEEEcCccccccccC
Q 009756          297 TYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDART-NQPVPADGKTIGEIVMRGSCVMKGYLK  375 (526)
Q Consensus       297 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~-g~~~~~~~~~~Gel~v~~~~~~~gy~~  375 (526)
                      .||+||++++++.+....          ....+.+|.|.+++ .++|+|+++ +.+++.+  +.|||+++|+.++.||++
T Consensus       367 ~YG~TE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~~g--~~Gel~v~~~~~~~gy~~  433 (573)
T PRK05605        367 GYGLTETSPIIVGNPMSD----------DRRPGYVGVPFPDT-EVRIVDPEDPDETMPDG--EEGELLVRGPQVFKGYWN  433 (573)
T ss_pred             ccccchhchhhhcCCccc----------CCcCCccccCCCCC-EEEEEcCCCCCccCCCC--CeeEEEEecCchhhhhcC
Confidence            999999987665542211          11236789999999 699999886 5788877  799999999999999999


Q ss_pred             ChhhhhhhhcCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEE
Q 009756          376 NPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF  455 (526)
Q Consensus       376 ~~~~~~~~~~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  455 (526)
                      ++..+...|.+|||+|||+++++++|.+++.||.||+++.+|++|+|.+||+++..++.|.+++|++.++...++.++++
T Consensus       434 ~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~  513 (573)
T PRK05605        434 RPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAA  513 (573)
T ss_pred             ChhHhhhcccCCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             EEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          456 VTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       456 v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      +++.++...     ...+++++++++|+.+++|..+.+++ ||+|++||++|++|++++.+.
T Consensus       514 vv~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~~~  570 (573)
T PRK05605        514 VVLEPGAAL-----DPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVREELLEK  570 (573)
T ss_pred             EEECCCCCC-----CHHHHHHHHHHhCccccCCcEEEEeccCCCCCcccccHHHHHHHHHHH
Confidence            998876443     45889999999999999999999887 999999999999999998654

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6e-64  Score=517.41  Aligned_cols=476  Identities=22%  Similarity=0.329  Sum_probs=382.0

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        46 y~~l~~~~~~~a~~-L---~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~  121 (534)
T PRK05852         46 YRDLARLVDDLAGQ-L---TRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLI  121 (534)
T ss_pred             HHHHHHHHHHHHHH-H---HhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCccc--HHHHHhhCCCCcCCCCCCCCCCeEEEE
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIE--YEKFLETGDPEFAWKPPEDEWQSIALG  158 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~a~i~  158 (526)
                      +............  .       ..+..+.+......        ..+...  +....  .............++.++++
T Consensus       122 ~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~il  182 (534)
T PRK05852        122 DADGPHDRAEPTT--R-------WWPLTVNVGGDSGP--------SGGTLSVHLDAAT--EPTPATSTPEGLRPDDAMIM  182 (534)
T ss_pred             cCCCcchhccccc--c-------ccceeeeecccccc--------ccccccccccccc--CCCccccccCCCCCCceEEE
Confidence            8753321111000  0       01112222211100        000000  00000  00000111112356789999


Q ss_pred             ecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec---ccCHHHHHHH
Q 009756          159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR---QVTAKAVYTA  235 (526)
Q Consensus       159 ~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~  235 (526)
                      |||||||.||+|.++|.++...+......+++..+|++++..|++|..++...+...+.++..++++   .+++..+++.
T Consensus       183 ~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~  262 (534)
T PRK05852        183 FTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDD  262 (534)
T ss_pred             eCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHH
Confidence            9999999999999999999988888888888999999999999999999876666555555555552   4678899999


Q ss_pred             HHhcCceeeeccHHHHHHHHccCCCC--CCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcccccc
Q 009756          236 IATHGVTHFCAAPVVLNAIANASPED--TILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAW  312 (526)
Q Consensus       236 i~~~~~t~l~~~P~~~~~l~~~~~~~--~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~  312 (526)
                      ++++++|+++++|+++..|.+.....  ... .+++|.++++|+++++++.+.+. .++.++++.||+||++..++....
T Consensus       263 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  341 (534)
T PRK05852        263 IKAVGATWYTAVPTIHQILLERAATEPSGRK-PAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQI  341 (534)
T ss_pred             HHHcCCcEEEcChHHHHHHHhhccccccccc-CCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCc
Confidence            99999999999999999998865432  223 67999999999999999999988 569999999999999876554321


Q ss_pred             CCCCCCCCccccccccccccee--eeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeee
Q 009756          313 KPEWDSLPFETQARLNARQGVR--TICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH  390 (526)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~G~~--~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~  390 (526)
                      .....      ......++|.+  .+++ .++++|++ |++++.+  +.|||+++|+.++.||+++++.+...|.+|||+
T Consensus       342 ~~~~~------~~~~~~~~g~~g~~~g~-~~~i~d~~-g~~~~~g--~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~  411 (534)
T PRK05852        342 EGIGQ------TENPVVSTGLVGRSTGA-QIRIVGSD-GLPLPAG--AVGEVWLRGTTVVRGYLGDPTITAANFTDGWLR  411 (534)
T ss_pred             ccccc------ccCcccccccCCCCCCC-eEEEECCC-CCCCCCC--CceEEEEecCcccchhcCCcccchhhhcCCCcc
Confidence            10000      00011223333  6788 69999987 8889887  799999999999999999999999999999999


Q ss_pred             cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhh
Q 009756          391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL  470 (526)
Q Consensus       391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  470 (526)
                      |||++++++||++++.||.+|+|+.+|.+|+|.+||.++.++|+|.+++|++.+++..++.++++++..+....     .
T Consensus       412 TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~-----~  486 (534)
T PRK05852        412 TGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPP-----T  486 (534)
T ss_pred             cCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCC-----C
Confidence            99999999999999999999999999999999999999999999999999999998888999999987655433     5


Q ss_pred             HHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          471 AEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       471 ~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                      .+++.++++++|+.+++|..+.+++ ||+|++||++|++|++++..
T Consensus       487 ~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~  532 (534)
T PRK05852        487 AEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGH  532 (534)
T ss_pred             HHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHHHHHHhcc
Confidence            6789999999999999999999998 99999999999999998853

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-63  Score=514.44  Aligned_cols=480  Identities=28%  Similarity=0.413  Sum_probs=406.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.||.++++++|.+ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.++++++++
T Consensus        45 y~~l~~~~~~~a~~-L---~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~  120 (542)
T PRK07786         45 WRELDDRVAALAGA-L---SRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVT  120 (542)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEE
Confidence            68999999999999 9   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      ++.....+.......+       ..+.++.+++..          ..+..++++++........ ......+++++++||
T Consensus       121 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~i~~T  182 (542)
T PRK07786        121 EAALAPVATAVRDIVP-------LLSTVVVAGGSS----------DDSVLGYEDLLAEAGPAHA-PVDIPNDSPALIMYT  182 (542)
T ss_pred             ccchHHHHHHhhhccC-------ccceEEEecCCC----------cccccCHHHHhhccCCCCC-CCCCCCCCeEEEEeC
Confidence            9877665544433222       345566554321          1233566666554332221 122456789999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCC-cCCcEEEEecccccchhhHHHHHHHhhcceeeeec--ccCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGM-NEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR--QVTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~i~  237 (526)
                      |||||.||+|.++|.++...+......+++ ..++++++..|++|.+|+...+..+..|+++++.+  .+++..+++.++
T Consensus       183 SGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~  262 (542)
T PRK07786        183 SGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLE  262 (542)
T ss_pred             CCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHH
Confidence            999999999999999998888777777766 67889999999999999988888888888888764  578999999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCccccccCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      ++++|.++++|+++..+.........  ..++|.+++||+++++++.+.+.+ + +.++++.||+||++++.+.+.... 
T Consensus       263 ~~~~t~~~~~P~~l~~l~~~~~~~~~--~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~-  339 (542)
T PRK07786        263 AEKVTGIFLVPAQWQAVCAEQQARPR--DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGED-  339 (542)
T ss_pred             HcCCeEEEehHHHHHHHHhCcccCcc--CcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCccc-
Confidence            99999999999999999987654333  247999999999999999999884 4 789999999999987655432111 


Q ss_pred             CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCcee
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLA  395 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~  395 (526)
                              ......++|.|++++ .++|+|++ +..++.+  +.|||+++|+.++.||++++..+...|.+|||+|||++
T Consensus       340 --------~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~  407 (542)
T PRK07786        340 --------AIRKLGSVGKVIPTV-AARVVDEN-MNDVPVG--EVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLV  407 (542)
T ss_pred             --------ccccCCCccccCCCc-eEEEECCC-CCCCcCC--CceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceE
Confidence                    112236789999999 69999976 8888877  79999999999999999999999999999999999999


Q ss_pred             EEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHH
Q 009756          396 VKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVS  475 (526)
Q Consensus       396 ~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~  475 (526)
                      +++++|.+++.||.+|+|+++|.+++|.+||.++.+++.|.+++|++.+.+..++.++++++..++....    ..+++.
T Consensus       408 ~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~l~  483 (542)
T PRK07786        408 RQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAAL----TLEDLA  483 (542)
T ss_pred             EEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCC----CHHHHH
Confidence            9999999999999999999999999999999999999999999999998888788889998877554211    468899


Q ss_pred             HHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCCccc
Q 009756          476 KFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPVKM  521 (526)
Q Consensus       476 ~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~~~  521 (526)
                      ++++++++.+++|..+.+++ ||+|++||++|++|++++.+....+.
T Consensus       484 ~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~~~~  530 (542)
T PRK07786        484 EFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGACVNVER  530 (542)
T ss_pred             HHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhhhchhh
Confidence            99999999999999999888 99999999999999999998887654

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-63  Score=510.35  Aligned_cols=461  Identities=22%  Similarity=0.249  Sum_probs=380.5

Q ss_pred             CccchhhhhhcccccccCccCC-CCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLF-PSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~-g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.++++++|++ |   ++. |++++++|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|
T Consensus        31 y~el~~~v~~lA~~-L---~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li  106 (529)
T PRK07867         31 WREHIRGSAARAAA-L---RARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVL  106 (529)
T ss_pred             HHHHHHHHHHHHHH-H---HHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEE
Confidence            78999999999999 8   886 899999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~  159 (526)
                      ++++....+....   .        ...++.++.                ..+.+++..............++++++++|
T Consensus       107 ~~~~~~~~~~~~~---~--------~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  159 (529)
T PRK07867        107 TESAHAELLDGLD---P--------GVRVINVDS----------------PAWADELAAHRDAEPPFRVADPDDLFMLIF  159 (529)
T ss_pred             ECHhHHHHHHhhc---c--------CceEEEecc----------------ccHHHHhcccCCCCCCcccCCccceEEEEE
Confidence            9987765443321   1        122333321                124444433222111112346789999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHH-HHhhcceeeeecccCHHHHHHHHHh
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWS-LAALCGTSICLRQVTAKAVYTAIAT  238 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~  238 (526)
                      ||||||.||+|+++|.++..........+++..+|++++..|++|..++...+. .+..|+++++...+++..+++.+++
T Consensus       160 TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~  239 (529)
T PRK07867        160 TSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPDVRR  239 (529)
T ss_pred             CCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHH
Confidence            999999999999999999888888888888999999999999999998865554 4555666655577889999999999


Q ss_pred             cCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCCC
Q 009756          239 HGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDS  318 (526)
Q Consensus       239 ~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~  318 (526)
                      +++|++.++|+.+..++......... .+++|. ++||+.+++...+..+.+|+++++.||+||+++.+....   .   
T Consensus       240 ~~vt~~~~~p~~~~~ll~~~~~~~~~-~~~lr~-~~gg~~~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~---~---  311 (529)
T PRK07867        240 YGATYANYVGKPLSYVLATPERPDDA-DNPLRI-VYGNEGAPGDIARFARRFGCVVVDGFGSTEGGVAITRTP---D---  311 (529)
T ss_pred             hCCeEEeccHHHHHHHHhCCCccccc-ccceEE-EecCCCChHHHHHHHHHhCCcEEEeecccccccccccCC---C---
Confidence            99999999999999988765433322 456774 568888887765444467999999999999975543211   0   


Q ss_pred             CCcccccccccccceeeeecCCceeecCCCCCccCCCCCc------------eEEEEE-cCccccccccCChhhhhhhhc
Q 009756          319 LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKT------------IGEIVM-RGSCVMKGYLKNPKANEEAFA  385 (526)
Q Consensus       319 ~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~------------~Gel~v-~~~~~~~gy~~~~~~~~~~~~  385 (526)
                             ....++|.+.++   ++++|++++++++.+  +            .|||++ +|++++.||+++++.+...|.
T Consensus       312 -------~~~~~~g~~~~~---~~i~~~~~~~~~~~g--~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~  379 (529)
T PRK07867        312 -------TPPGALGPLPPG---VAIVDPDTGTECPPA--EDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMR  379 (529)
T ss_pred             -------CCCCCcCCCCCC---EEEEECCCCCCCCCC--ccccccccccCCcceEEEEecCCcccccccCChHhhhhhhc
Confidence                   112567888876   678887778888877  5            899999 999999999999999999999


Q ss_pred             CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchh
Q 009756          386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADEL  465 (526)
Q Consensus       386 ~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  465 (526)
                      +|||+|||+++++++|.+++.||.||+|+++|.+|+|.+||.+|.++|+|.+++|++.+++..++.++++++..++... 
T Consensus       380 ~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~-  458 (529)
T PRK07867        380 GGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKF-  458 (529)
T ss_pred             CCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999889999999998876543 


Q ss_pred             hhhhhHHHHHHHHHhc--CCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          466 DKGKLAEDVSKFCRAK--MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       466 ~~~~~~~~l~~~l~~~--l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                          ...+++++++++  |+.+++|..+.+++ ||+|++||++|+.|+++..+..
T Consensus       459 ----~~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~~~  509 (529)
T PRK07867        459 ----DPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVDCA  509 (529)
T ss_pred             ----CHHHHHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCCCC
Confidence                457778888765  99999999999888 9999999999999999887554

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.3e-64  Score=531.69  Aligned_cols=451  Identities=20%  Similarity=0.238  Sum_probs=372.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++.++++++|+
T Consensus        33 y~eL~~~~~~lA~~-L---~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~  108 (705)
T PRK06060         33 HGQIHDGAARLGEV-L---RNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVT  108 (705)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCC-CcCCCCCCCCCCeEEEEe
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP-EFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~i~~  159 (526)
                      +.+....+..               ..++                     ....++..... ......+..++++++++|
T Consensus       109 ~~~~~~~~~~---------------~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~il~  152 (705)
T PRK06060        109 SDALRDRFQP---------------SRVA---------------------EAAELMSEAARVAPGGYEPMGGDALAYATY  152 (705)
T ss_pred             chHHhhhhcc---------------cccc---------------------hhhhhhhhccccCCCCCCCCCCCCeEEEEE
Confidence            8754332210               0000                     00011111000 000011235678999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhhH-hHhCCcCCcEEEEecccccchhhH-HHHHHHhhcceeeeec-ccCHHHHHHHH
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNGA-LIWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSICLR-QVTAKAVYTAI  236 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~~~~-~~~~~~~~~~i  236 (526)
                      ||||||.||+|.++|.++........ ..+++..++++++..|++|..++. ..+.++..|+++++.+ ..++..++..+
T Consensus       153 TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i  232 (705)
T PRK06060        153 TSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILS  232 (705)
T ss_pred             CCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHH
Confidence            99999999999999999988776554 457888999999999999988874 3455667777777765 46788889999


Q ss_pred             HhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCccccccCC
Q 009756          237 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKP  314 (526)
Q Consensus       237 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~  314 (526)
                      +++++|+++++|+++..+......  .. ++++|.+++|||++++++.+++.+ + ++++++.||+||++..+..+... 
T Consensus       233 ~~~~~t~~~~~P~~l~~l~~~~~~--~~-~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-  308 (705)
T PRK06060        233 ARFGPSVLYGVPNFFARVIDSCSP--DS-FRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVD-  308 (705)
T ss_pred             HhcCCeEEeeHHHHHHHHHHhccc--cc-ccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCC-
Confidence            999999999999999999876432  22 789999999999999999999884 4 58999999999997654332111 


Q ss_pred             CCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCce
Q 009756          315 EWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDL  394 (526)
Q Consensus       315 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~  394 (526)
                                .....++|+|++++ +++|+|++ |++++.|  +.|||+++|++++.||+++++.+..  .+|||+|||+
T Consensus       309 ----------~~~~~~iG~p~~~~-~v~i~d~~-g~~~~~g--~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl  372 (705)
T PRK06060        309 ----------EWRLGTLGRVLPPY-EIRVVAPD-GTTAGPG--VEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDR  372 (705)
T ss_pred             ----------CCCcCcccccCCCc-EEEEECCC-CCCCCCC--CceEEEEccchhhhhhhCCCccccc--CCCcEECCee
Confidence                      01236789999999 69999987 8888888  7999999999999999998876432  4789999999


Q ss_pred             eEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHH
Q 009756          395 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDV  474 (526)
Q Consensus       395 ~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l  474 (526)
                      |++++||++++.||.||+||++|++|+|.+||.++.+++.|.+++|++.++...++.++++++...+....  .....++
T Consensus       373 ~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~--~~~~~~i  450 (705)
T PRK06060        373 VCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATID--GSVMRDL  450 (705)
T ss_pred             EEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcC--hHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988888999999877553221  1145788


Q ss_pred             HHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHH
Q 009756          475 SKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA  513 (526)
Q Consensus       475 ~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~  513 (526)
                      .++++++|+.|++|..+.+++ ||+|++||++|++|++++
T Consensus       451 ~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~  490 (705)
T PRK06060        451 HRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS  490 (705)
T ss_pred             HHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence            899999999999999999888 999999999999999875

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.4e-63  Score=511.13  Aligned_cols=479  Identities=28%  Similarity=0.414  Sum_probs=404.5

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.+++.++|.. |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        39 y~~l~~~~~~~a~~-L---~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~  114 (523)
T PRK08316         39 YAELDAAVNRVAAA-L---LDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLV  114 (523)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEE
Confidence            78999999999999 9   8899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+.+......        ...+........      .........+.++....+... .......+++++++||
T Consensus       115 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~T  179 (523)
T PRK08316        115 DPALAPTAEAALALLP--------VDTLILSLVLGG------REAPGGWLDFADWAEAGSVAE-PDVELADDDLAQILYT  179 (523)
T ss_pred             ccchHHHHHHHhhhcC--------ccceeeeecccc------cccccchhhHHHHHhcCCCcc-CccCCCCCCeEEEEeC
Confidence            9887776655443322        111111111000      001123355555544332221 2233567899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHH-HHhhcceeeeecccCHHHHHHHHHhc
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWS-LAALCGTSICLRQVTAKAVYTAIATH  239 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~  239 (526)
                      |||||.||+|.++|.++..........+++.++++++..+|++|..++...+. .+..|++++..+..++..+++.++++
T Consensus       180 SGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~  259 (523)
T PRK08316        180 SGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAE  259 (523)
T ss_pred             CCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHh
Confidence            99999999999999999988888888889999999999999999998765444 45667777777778999999999999


Q ss_pred             CceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCccccccCCCCC
Q 009756          240 GVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPEWD  317 (526)
Q Consensus       240 ~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~  317 (526)
                      ++|++.++|+++..+.+........ ++++|.+++||+.++++..+.+.+ + ++++++.||+||++.+++.+....   
T Consensus       260 ~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~---  335 (523)
T PRK08316        260 RITSFFAPPTVWISLLRHPDFDTRD-LSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEE---  335 (523)
T ss_pred             CCeEEEeCHHHHHHHHcCcccccCC-cccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccc---
Confidence            9999999999999999886655555 789999999999999999999985 3 789999999999987666542211   


Q ss_pred             CCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEE
Q 009756          318 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVK  397 (526)
Q Consensus       318 ~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~  397 (526)
                            .....+++|.|++++ +++|+|++ |++++.+  +.|||+++|+.++.||++++..+...|.+|||+|||+|++
T Consensus       336 ------~~~~~~~~G~~~~~~-~~~i~~~~-~~~~~~g--~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~  405 (523)
T PRK08316        336 ------HLRRPGSAGRPVLNV-ETRVVDDD-GNDVAPG--EVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVM  405 (523)
T ss_pred             ------cccccCCcccCCCCc-EEEEEcCC-CCCCCCC--CcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEE
Confidence                  112236889999999 69999976 8888887  7999999999999999999999999999999999999999


Q ss_pred             cCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHH
Q 009756          398 HPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKF  477 (526)
Q Consensus       398 ~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  477 (526)
                      ++||.+++.||.+|+|+++|++++|.+||+.+.++++|.+++|++.+++..++.++++++..++...     ..+.+.++
T Consensus       406 ~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~  480 (523)
T PRK08316        406 DEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATV-----TEDELIAH  480 (523)
T ss_pred             cCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCC-----CHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888999999998866543     45778999


Q ss_pred             HHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          478 CRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       478 l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                      ++++++.+++|..+.+++ +|+|++||++|++|++++.+..
T Consensus       481 ~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~~  521 (523)
T PRK08316        481 CRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGAF  521 (523)
T ss_pred             HHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhhc
Confidence            999999999999999888 9999999999999999998654

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=4.1e-64  Score=521.07  Aligned_cols=481  Identities=21%  Similarity=0.225  Sum_probs=370.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        44 y~~l~~~~~~~A~~-L---~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~  119 (552)
T PRK09274         44 FAELDARSDAIAHG-L---NAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIG  119 (552)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEe
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++..  +.+......     ......++.++...          .....++.++...............++++++++||
T Consensus       120 ~~~~~--~~~~~~~~~-----~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T  182 (552)
T PRK09274        120 IPKAH--LARRLFGWG-----KPSVRRLVTVGGRL----------LWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFT  182 (552)
T ss_pred             ccHHH--HHHHHhccC-----ccchhheecccccc----------ccCCccHHHhcccCccccCCCCCCCCCCeEEEEEC
Confidence            75311  111111100     00123344333210          01123455544222211111223467899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec-------ccCHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR-------QVTAKAVY  233 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~~  233 (526)
                      |||||.||+|.++|.++...+......+++.++++.+...|++|..++       ..|++.++..       ..++..++
T Consensus       183 SGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~  255 (552)
T PRK09274        183 SGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLF  255 (552)
T ss_pred             CCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhh-------hhCCeEEecCcccccccccCHHHHH
Confidence            999999999999999999988888888889999999999998765442       3455555432       35789999


Q ss_pred             HHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c--CCeeecccccccCCCCcccc
Q 009756          234 TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K--GFRITHTYGLTELTGPASVC  310 (526)
Q Consensus       234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~--~~~i~~~YG~tE~~~~~~~~  310 (526)
                      +.++++++|+++++|+++..|.+........ ++++|.+++||+++++++.+++.+ +  ++++++.||+||++++++..
T Consensus       256 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  334 (552)
T PRK09274        256 AAIERYGVTNLFGSPALLERLGRYGEANGIK-LPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIE  334 (552)
T ss_pred             HHHHHcCCeEEeccHHHHHHHHHHhhhcCCC-CchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeec
Confidence            9999999999999999999999876544445 889999999999999999999985 4  57999999999998755432


Q ss_pred             ccCCCCCCCCcccccccccccceeeeecCCceeecCC--------CCCccCCCCCceEEEEEcCccccccccCChhhhhh
Q 009756          311 AWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDAR--------TNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE  382 (526)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~--------~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~  382 (526)
                      .... ..............++|.|++++ +++|+|+.        ++++++.|  +.|||+++|++++.||+++++.+..
T Consensus       335 ~~~~-~~~~~~~~~~~~~~~vG~~~~~~-~~~ivd~~~~~~~~~~~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~t~~  410 (552)
T PRK09274        335 SREI-LFATRAATDNGAGICVGRPVDGV-EVRIIAISDAPIPEWDDALRLATG--EIGEIVVAGPMVTRSYYNRPEATRL  410 (552)
T ss_pred             chhh-hccccccccCCCCcccCccCCCc-eEEEEeccccccccccccccCCCC--CeeEEEEecCcccccccCChHHhhh
Confidence            1110 00000000011124689999999 69999963        35677777  7999999999999999999998887


Q ss_pred             hhc---CC--eeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEE
Q 009756          383 AFA---NG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVT  457 (526)
Q Consensus       383 ~~~---~g--~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~  457 (526)
                      .|.   +|  ||+|||+|++++||+++++||.||+|+++|.+|+|.+||.+|.+||+|.+++|++.+++. ++.++++|+
T Consensus       411 ~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~-~~~~~~~v~  489 (552)
T PRK09274        411 AKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVPG-AQRPVLCVE  489 (552)
T ss_pred             hhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCCC-CceEEEEEE
Confidence            762   56  999999999999999999999999999999999999999999999999999999998764 678889998


Q ss_pred             ecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCC--CCccccHHHHHHHHHhcC
Q 009756          458 LKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKS--ATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       458 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t--~~GKv~r~~l~~~~~~~~  517 (526)
                      +.++... +..+..+++++++.. .+.++.|..+.+++ ||+|  ++||++|++|++++.++.
T Consensus       490 ~~~~~~~-~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~~~  550 (552)
T PRK09274        490 LEPGVAC-SKSALYQELRALAAA-HPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAAKQL  550 (552)
T ss_pred             ccCcccc-chHHHhhhhHHHHHh-cCCCcceeEEeccCCCCccccccccccHHHHHHHHHHhh
Confidence            8876543 111133444444433 23456777888888 9999  799999999999887653

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.9e-64  Score=522.02  Aligned_cols=485  Identities=16%  Similarity=0.176  Sum_probs=374.5

Q ss_pred             CccchhhhhhcccccccCccC---CCCCCC-----------CEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHH
Q 009756            1 MDQSTTRGIRLTGVAVDSPLL---FPSSPS-----------DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVV   66 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~---~g~~~g-----------d~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l   66 (526)
                      |+||.+++.++|++ |   .+   +|+++|           |+|+|+++|+++|++++|||+++|++.||+++.++.+++
T Consensus        94 y~el~~~v~~~A~~-L---~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el  169 (746)
T PTZ00342         94 YGNFFKKVLSFSHS-L---NTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVI  169 (746)
T ss_pred             HHHHHHHHHHHHHH-H---HHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHH
Confidence            78999999999999 8   76   499998           999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCceEEEEccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCC------------------chhh-------
Q 009756           67 AFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCD------------------SKQL-------  121 (526)
Q Consensus        67 ~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------~~~~-------  121 (526)
                      .++|++++++++|++.+....+.+....++       .++.++.++.....                  ....       
T Consensus       170 ~~il~~s~~~~lv~~~~~~~~l~~~~~~~~-------~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (746)
T PTZ00342        170 VDILNETKLEWLCLDLDLVEGLLERKNELP-------HLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQK  242 (746)
T ss_pred             HHHHhcCCCCEEEEcHHHHHHHHHhhccCC-------CceEEEEECCCCccccccccccccccccccccccccccccccc
Confidence            999999999999998877776666555544       56788888653211                  0000       


Q ss_pred             --------------------------------hhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEecCCCCCCccc
Q 009756          122 --------------------------------EYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKG  169 (526)
Q Consensus       122 --------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~  169 (526)
                                                      .........+|+++.+..... ....+.+++|+++|+|||||||.|||
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~IiYTSGTTG~PKG  321 (746)
T PTZ00342        243 GNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTN-YKIQNEDPDFITSIVYTSGTSGKPKG  321 (746)
T ss_pred             ccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcccC-CCCCCCCccceEEEEEcCCCCCCCCE
Confidence                                            000000112334433322111 11123467899999999999999999


Q ss_pred             eeecchhHHHHHHhhHhHh--CCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcCceeeecc
Q 009756          170 VVVSHRGAYLMSLNGALIW--GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAA  247 (526)
Q Consensus       170 v~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~  247 (526)
                      |++||+++++.+.......  .....+++++++|++|.+++...+.++..|+++++.+. ++..+++.|++++||+++++
T Consensus       322 VmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~V  400 (746)
T PTZ00342        322 VMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGV  400 (746)
T ss_pred             EEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEch
Confidence            9999999988876554321  23356899999999999999877777777888777654 88999999999999999999


Q ss_pred             HHHHHHHHcc--------CCCCC---------------------------------CCCCCceeeEeccCCCCCHHHHHH
Q 009756          248 PVVLNAIANA--------SPEDT---------------------------------ILPLTNVVNVNTAGAPPPPSLLFA  286 (526)
Q Consensus       248 P~~~~~l~~~--------~~~~~---------------------------------~~~l~~lr~~~~~Ge~l~~~~~~~  286 (526)
                      |.+++.|...        +....                                 ....+++|.+++||+++++++.++
T Consensus       401 P~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~  480 (746)
T PTZ00342        401 PKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEE  480 (746)
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHH
Confidence            9999998752        10000                                 000268999999999999999999


Q ss_pred             Hh-hcCCeeecccccccCCCCccccccCCCCCCCCcccccccccccceee-eecCCceeecCCCCCccCCCCCceEEEEE
Q 009756          287 MS-QKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT-ICLDGLDVIDARTNQPVPADGKTIGEIVM  364 (526)
Q Consensus       287 ~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~v~d~~~g~~~~~~~~~~Gel~v  364 (526)
                      +. .+|++++++||+||+++.++.....           ....+++|.|+ |++ +++++|.+++.....+  ..|||++
T Consensus       481 ~~~~~g~~i~~gYGlTEt~~~~~~~~~~-----------~~~~gsvG~p~~pg~-e~ki~d~~~~~~~~~~--~~GEl~v  546 (746)
T PTZ00342        481 LSVLLNVNYYQGYGLTETTGPIFVQHAD-----------DNNTESIGGPISPNT-KYKVRTWETYKATDTL--PKGELLI  546 (746)
T ss_pred             HHHhcCCCEEEeeccCcccceeeeccCC-----------CCCcccccCcCCCcE-EEEEecccccccCCCC--CceEEEE
Confidence            98 5699999999999997665542211           12337899998 999 6999986644444433  4699999


Q ss_pred             cCccccccccCChhhhhhhhc-CCeeecCceeEEcCCceEEEeccccceee-eCCeeechHHHHHHHHcCCCeeeeEEEE
Q 009756          365 RGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVEVEKVLYLHPLVLEAAVVA  442 (526)
Q Consensus       365 ~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~~~~~g~~~~~GR~~d~i~-~~G~~v~~~~ie~~l~~~~~v~~~~v~~  442 (526)
                      +|++++.||+++++.+...|. +|||+|||+|++++||+++++||.+|+|| .+|++|+|.+||+++.++|.|.+|+|++
T Consensus       547 rGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG  626 (746)
T PTZ00342        547 KSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYG  626 (746)
T ss_pred             ecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEc
Confidence            999999999999999999996 99999999999999999999999999999 6899999999999999999999999999


Q ss_pred             cCCCCCCceeEEEEEecCCCc----------------hhhhh-----------hhHH----HHHHHHH-hcCCCccCCcE
Q 009756          443 RPDERWGESPCAFVTLKPEAD----------------ELDKG-----------KLAE----DVSKFCR-AKMPSYWVPKS  490 (526)
Q Consensus       443 ~~~~~~~~~~~~~v~~~~~~~----------------~~~~~-----------~~~~----~l~~~l~-~~l~~~~~p~~  490 (526)
                      .+..   ..++|+|+++...-                ..+..           ...+    ++.+..+ ..|+.|..++.
T Consensus       627 ~~~~---~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~  703 (746)
T PTZ00342        627 DDSM---DGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIIND  703 (746)
T ss_pred             cCCc---cccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeee
Confidence            7533   24888888775210                00000           0112    2222222 36999999998


Q ss_pred             EEecc--cc----CCCCccccHHHHHHHHHh
Q 009756          491 VVFAA--LP----KSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       491 ~~~~~--lP----~t~~GKv~r~~l~~~~~~  515 (526)
                      +.+..  +-    .|++.|+.|+.+.+.|..
T Consensus       704 ~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~  734 (746)
T PTZ00342        704 IYLTSKVWDTNNYLTPTFKVKRFYVFKDYAF  734 (746)
T ss_pred             EEEecCCCCCCCccChhhhhhHHHHHHHHHH
Confidence            88764  43    799999999999998874

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=5.8e-63  Score=507.54  Aligned_cols=468  Identities=25%  Similarity=0.361  Sum_probs=395.5

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++..++..+++.++++++++
T Consensus        31 y~eL~~~~~~la~~-L---~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~  106 (504)
T PRK07514         31 YGDLDAASARLANL-L---VALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVC  106 (504)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      ++.....+........        ...++.++....             ..+.+......... ......++++++++||
T Consensus       107 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-------------~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~T  164 (504)
T PRK07514        107 DPANFAWLSKIAAAAG--------APHVETLDADGT-------------GSLLEAAAAAPDDF-ETVPRGADDLAAILYT  164 (504)
T ss_pred             ccchhHHHHHhhhccC--------CceEEEecCCCc-------------ccHHHhhhhcCccc-CcccCCCCCeEEEEEC
Confidence            9887766555433222        333555543211             11222211111111 1123567899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecccCHHHHHHHHHhc
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQVTAKAVYTAIATH  239 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  239 (526)
                      |||||.||+|.++|.++...+......+++.+++++++..|++|..++.. ....+..|+++++.+..++..+++.+.  
T Consensus       165 SGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~--  242 (504)
T PRK07514        165 SGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--  242 (504)
T ss_pred             CCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHHHH--
Confidence            99999999999999999988887778888999999999999999988764 445666777777777788999999994  


Q ss_pred             CceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCCCCC
Q 009756          240 GVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEWDS  318 (526)
Q Consensus       240 ~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~  318 (526)
                      ++|++.++|.++..+.......... ++++|.+++||+++++++.+.+. ..++++++.||+||++...+....      
T Consensus       243 ~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~------  315 (504)
T PRK07514        243 RATVMMGVPTFYTRLLQEPRLTREA-AAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYD------  315 (504)
T ss_pred             hheeeecHHHHHHHHHcCCCCCccc-ccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCcc------
Confidence            7999999999999998876554445 78999999999999999999998 468899999999998754432110      


Q ss_pred             CCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeecCceeEE
Q 009756          319 LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVK  397 (526)
Q Consensus       319 ~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~~  397 (526)
                           ......++|.|++++ .++|+|++++++++.|  +.|||+++|+.++.||++++..+...|. ++||+|||++++
T Consensus       316 -----~~~~~~~~G~~~~~~-~v~i~d~~~~~~~~~g--~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~  387 (504)
T PRK07514        316 -----GERRAGTVGFPLPGV-SLRVTDPETGAELPPG--EIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKI  387 (504)
T ss_pred             -----ccccCcccccCCCCc-EEEEEECCCCCCCCCC--CceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEE
Confidence                 111236789999999 6999997779999988  7899999999999999999999988886 889999999999


Q ss_pred             cCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHH
Q 009756          398 HPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKF  477 (526)
Q Consensus       398 ~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  477 (526)
                      +++|.+++.||.||+|+++|.+++|.+||.++.++++|.+++|++.+++..++.++++++..+....     ...++++.
T Consensus       388 ~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~  462 (504)
T PRK07514        388 DERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAAL-----DEAAILAA  462 (504)
T ss_pred             cCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCC-----CHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998888889999998765543     45789999


Q ss_pred             HHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          478 CRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       478 l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      ++++++.+++|..+++++ +|+|++||++|+.|++++.+.
T Consensus       463 ~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~  502 (504)
T PRK07514        463 LKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADL  502 (504)
T ss_pred             HHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence            999999999999999888 999999999999999998764

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=3.9e-63  Score=506.05  Aligned_cols=452  Identities=28%  Similarity=0.440  Sum_probs=386.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++..+.+++..+++.++++++++
T Consensus        30 y~el~~~~~~~a~~-L---~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~  105 (483)
T PRK03640         30 FMELHEAVVSVAGK-L---AALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLIT  105 (483)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++.........   .                                 ..++++................+++++++||
T Consensus       106 ~~~~~~~~~~~~---~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T  149 (483)
T PRK03640        106 DDDFEAKLIPGI---S---------------------------------VKFAELMNGPKEEAEIQEEFDLDEVATIMYT  149 (483)
T ss_pred             cchhhHHHhhhc---c---------------------------------ccHHHHhhcccccCCCCCCCCCCCeEEEEeC
Confidence            876543322110   0                                 0122222221111111122456889999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG  240 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  240 (526)
                      |||||.||+|.++|.++...+......+++++++++++.+|++|.+++...+..+..|+++++.+..++..+++.+++++
T Consensus       150 SGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~  229 (483)
T PRK03640        150 SGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGG  229 (483)
T ss_pred             CCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhC
Confidence            99999999999999998887777777788999999999999999999888888888899988888889999999999999


Q ss_pred             ceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCCCCC
Q 009756          241 VTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLP  320 (526)
Q Consensus       241 ~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~  320 (526)
                      +|++.++|+++..|....... .. ..++|.+++||+++++...+.+.+.++++++.||+||++..+......       
T Consensus       230 ~t~l~~~P~~~~~l~~~~~~~-~~-~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-------  300 (483)
T PRK03640        230 VTIISVVSTMLQRLLERLGEG-TY-PSSFRCMLLGGGPAPKPLLEQCKEKGIPVYQSYGMTETASQIVTLSPE-------  300 (483)
T ss_pred             CcEEEeHHHHHHHHHhCcCcc-cc-CCcceEEEEcCCCCCHHHHHHHHHhCCCeeeeeccCcccccccccCcc-------
Confidence            999999999999998765433 22 578999999999999999999988899999999999987544332211       


Q ss_pred             cccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCC
Q 009756          321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD  400 (526)
Q Consensus       321 ~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~  400 (526)
                        ......+++|.|++++ ++++.|+  +++++.+  +.|||+++|+.++.||++++..+...|.+|||+|||++++++|
T Consensus       301 --~~~~~~~~vG~p~~~~-~~~i~~~--~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~  373 (483)
T PRK03640        301 --DALTKLGSAGKPLFPC-ELKIEKD--GVVVPPF--EEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEE  373 (483)
T ss_pred             --cccccCCCcccccCCc-EEEEecC--CCcCCCC--CceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCC
Confidence              0112237899999999 5998884  4777776  7899999999999999999999999999999999999999999


Q ss_pred             ceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHh
Q 009756          401 NYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA  480 (526)
Q Consensus       401 g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~  480 (526)
                      |.+++.||.+|++|.+|.+|+|.+||..+.++++|.++++++.+++..++.++++++.....       ..+++++++++
T Consensus       374 g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~  446 (483)
T PRK03640        374 GFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEV-------TEEELRHFCEE  446 (483)
T ss_pred             CCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCC-------CHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888788888888755433       34788999999


Q ss_pred             cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          481 KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       481 ~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                      +|+.+++|..+++++ ||+|++||++|+.|++++.+
T Consensus       447 ~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        447 KLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEE  482 (483)
T ss_pred             hccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence            999999999999888 99999999999999999875

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.6e-63  Score=512.30  Aligned_cols=489  Identities=30%  Similarity=0.497  Sum_probs=400.5

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        42 y~el~~~v~~la~~-L---~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~  117 (542)
T PRK06018         42 YAQIHDRALKVSQA-L---DRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVIT  117 (542)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +.+....+.+.....+       ....++.+.+....    .....++...+.+++......... ....++++++++||
T Consensus       118 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~T  185 (542)
T PRK06018        118 DLTFVPILEKIADKLP-------SVERYVVLTDAAHM----PQTTLKNAVAYEEWIAEADGDFAW-KTFDENTAAGMCYT  185 (542)
T ss_pred             ccccHHHHHHHHhhCC-------CccEEEEecccccc----cccCccccccHHHHhccCCcccCc-ccCCccceeeEEec
Confidence            9988777766655444       34555555432110    001112344666666554332211 22456789999999


Q ss_pred             CCCCCCccceeecchhHHH-H-HHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec-ccCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYL-M-SLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR-QVTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~-~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~  237 (526)
                      |||||.||+|.+||.+.+. . .......+++..+++++...|++|..++...+.++..|+++++.. .+++..+++.++
T Consensus       186 SGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~  265 (542)
T PRK06018        186 SGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLD  265 (542)
T ss_pred             CCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHH
Confidence            9999999999999997432 2 223344567889999999999999998877777777787776653 568899999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD  317 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~  317 (526)
                      ++++|++.++|+++..|.+........ ++++|.++++|+++++++.+++++++.++++.||+||++.+++.+...+.+.
T Consensus       266 ~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~  344 (542)
T PRK06018        266 TEKVTFTAGVPTVWLMLLQYMEKEGLK-LPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFS  344 (542)
T ss_pred             hcCCceeecCcHHHHHHHhcccccCCC-cccceEEEEcCCCCCHHHHHHHHHhCCCeEeeecccccCcccccccCccccc
Confidence            999999999999999998876555555 7899999999999999999999888999999999999987776554333222


Q ss_pred             CCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEE
Q 009756          318 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVK  397 (526)
Q Consensus       318 ~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~  397 (526)
                      ..+.........++|.|.+++ +++|+|++ ++.++.+++..|||+++|++++.||++...  .....+|||+|||++++
T Consensus       345 ~~~~~~~~~~~~~~G~~~~g~-~i~v~d~~-~~~~~~~~~~~Gel~i~g~~~~~gy~~~~~--~~~~~~~~~~TGDl~~~  420 (542)
T PRK06018        345 KLPGDARLDVLQKQGYPPFGV-EMKITDDA-GKELPWDGKTFGRLKVRGPAVAAAYYRVDG--EILDDDGFFDTGDVATI  420 (542)
T ss_pred             cCCchhhhhccccCCCCCCCc-EEEEECCC-CCCCCCCCCceeEEEEecCCcchhhhcCcc--cEecCCcEEEcCCEEEE
Confidence            222222222235789999998 69999986 888887655689999999999999998422  11124789999999999


Q ss_pred             cCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHH
Q 009756          398 HPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKF  477 (526)
Q Consensus       398 ~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  477 (526)
                      +++|++++.||.+|+|+.+|.+++|.+||..+.++|+|.+++|++.+++..++.+.++++..++...     ..+++.++
T Consensus       421 ~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~  495 (542)
T PRK06018        421 DAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETA-----TREEILKY  495 (542)
T ss_pred             cCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCC-----CHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888899999998876544     45789999


Q ss_pred             HHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          478 CRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       478 l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                      ++++++.+.+|..+.+++ ||+|++||++|++|++++.+
T Consensus       496 ~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        496 MDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKD  534 (542)
T ss_pred             HHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhc
Confidence            999999999999999888 99999999999999999977

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.4e-63  Score=487.52  Aligned_cols=483  Identities=24%  Similarity=0.321  Sum_probs=402.6

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.|+.+.+.++|+. |   .++|+++||+|++++|+.+++++++|||.++|++.+++-..+++.++...++.++++++++
T Consensus        99 ~~el~~~v~~~a~~-l---~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t  174 (626)
T KOG1175|consen   99 YKELLDQVVRLANV-L---RKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIIT  174 (626)
T ss_pred             HHHHHHHHHHHHHH-H---HhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEE
Confidence            67899999999999 9   9899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchH---------HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCC
Q 009756           81 DQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDE  151 (526)
Q Consensus        81 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  151 (526)
                      .+...         ....++....+.....  ....+++....             ....++..+....+...+ ...+.
T Consensus       175 ~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~-------------~d~~~~~~~~~a~~~~~~-~~~~~  238 (626)
T KOG1175|consen  175 QDVVARGGKSINLKCIVLEALLLVSDKSRP--VWLDLIVSRRN-------------RDLFWSLELKKASPEHPC-VPVKA  238 (626)
T ss_pred             EeeeccCCCccchhhhHHHHhhcccccccc--cceeeEEeccc-------------ccccHHHHhhhcCCCCCc-eecCc
Confidence            87433         2222222222210000  01111111111             135666666666555443 44788


Q ss_pred             CCeEEEEecCCCCCCccceeecchh-HHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHH-HHhhcceeeeec--cc
Q 009756          152 WQSIALGYTSGTTASPKGVVVSHRG-AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWS-LAALCGTSICLR--QV  227 (526)
Q Consensus       152 ~~~a~i~~TSGsTG~pK~v~~t~~~-l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~g~~~~~~~--~~  227 (526)
                      +|+.+|+|||||||.||++.+++.. ++..+......++++++|++++.....|+.+.++.+. .++.|++++++.  .+
T Consensus       239 edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~  318 (626)
T KOG1175|consen  239 EDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPF  318 (626)
T ss_pred             cCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCC
Confidence            8999999999999999999999876 5555556667789999999999999999998876555 677777777773  35


Q ss_pred             CHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCC-CCCceeeEeccCCCCCHHHHHHHh-hcCC-eeecccccccCC
Q 009756          228 TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMS-QKGF-RITHTYGLTELT  304 (526)
Q Consensus       228 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~-~i~~~YG~tE~~  304 (526)
                      ++..+++.+.++++|++++.|+.++.|.+........ .+++||.+.+.||++.++..+++. ..+. +|++.||+||+|
T Consensus       319 ~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG  398 (626)
T KOG1175|consen  319 DPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETG  398 (626)
T ss_pred             ChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccC
Confidence            8999999999999999999999999888776554332 147799999999999999999998 4566 599999999999


Q ss_pred             CCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCc---cccccccCChhhhh
Q 009756          305 GPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS---CVMKGYLKNPKANE  381 (526)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~~~  381 (526)
                      +.++.+.....         ....++.+.|.+++ .+.|+|++ |..++.+. +.|+|+++.+   +.+++|+++.+...
T Consensus       399 ~~~i~~~~g~~---------p~~pg~~~~p~~g~-~v~i~de~-g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~  466 (626)
T KOG1175|consen  399 GICITPKPGKL---------PIKPGSAGKPFPGY-DVQILDEN-GNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFR  466 (626)
T ss_pred             ceeeeccCCCC---------CcCccccCCCCCCc-ceEEECCC-CCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhh
Confidence            98887654322         23348899999999 49999995 99988876 7899999984   77899999988433


Q ss_pred             hh-hc--CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEe
Q 009756          382 EA-FA--NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTL  458 (526)
Q Consensus       382 ~~-~~--~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  458 (526)
                      .. |.  .|+|.|||.+++|+||+++++||+||+|+++|+++++.|||+++.+||.|.|++||+.+++..||.+.+||++
T Consensus       467 ~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl  546 (626)
T KOG1175|consen  467 AAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVL  546 (626)
T ss_pred             hhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEE
Confidence            33 33  7899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          459 KPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       459 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                      +++..  +.++..++|++.+++.++++..|+.|.+++ ||+|.+||+.|+.||+.+..+.
T Consensus       547 ~~g~~--~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~~  604 (626)
T KOG1175|consen  547 KSGSH--DPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGKA  604 (626)
T ss_pred             cCCCC--ChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhccCc
Confidence            99943  345589999999999999999999999998 9999999999999999998773

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=6.5e-63  Score=513.34  Aligned_cols=490  Identities=28%  Similarity=0.431  Sum_probs=399.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++..+.+++..+++.++++++++
T Consensus        46 y~~l~~~~~~~a~~-L---~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~  121 (559)
T PRK08315         46 YREFNEEVDALAKG-L---LALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIA  121 (559)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHH-----HHHHHHHHhhhc------cCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCc-----C
Q 009756           81 DQEFFS-----LAEEALKMMEAN------SEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEF-----A  144 (526)
Q Consensus        81 ~~~~~~-----~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~  144 (526)
                      +++...     .+.+........      ....+....++.++...          ..+...+.++........     .
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  191 (559)
T PRK08315        122 ADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK----------HPGMLNFDELLALGRAVDDAELAA  191 (559)
T ss_pred             eccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccC----------CcccccHHHHHhhccccccccccc
Confidence            875421     122221111000      00000223344443321          123345555543321110     0


Q ss_pred             CCCCCCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHH-HHhhcceeee
Q 009756          145 WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWS-LAALCGTSIC  223 (526)
Q Consensus       145 ~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~g~~~~~  223 (526)
                      ......++++++++|||||||.||+|.++|.++...+......+++.++++++...|++|..++...+. ++..|+++++
T Consensus       192 ~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~  271 (559)
T PRK08315        192 RQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVY  271 (559)
T ss_pred             hhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEE
Confidence            111235678999999999999999999999999988888888889999999999999999998865544 4445555553


Q ss_pred             e-cccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCC-eeeccccc
Q 009756          224 L-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGF-RITHTYGL  300 (526)
Q Consensus       224 ~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~-~i~~~YG~  300 (526)
                      . ..+++..+++.++++++|+++++|+++..+.......... ++++|.++++|+++++++.+.+. .++. ++++.||+
T Consensus       272 ~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~-~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~  350 (559)
T PRK08315        272 PGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFD-LSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGM  350 (559)
T ss_pred             ecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCC-chhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcc
Confidence            3 4578999999999999999999999999888776555555 88999999999999999999987 4554 59999999


Q ss_pred             ccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhh
Q 009756          301 TELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN  380 (526)
Q Consensus       301 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~  380 (526)
                      ||++.+++.+.....        ......++|.|++++ .++|+|++++++++.|  +.|||+++|+.++.||++++..+
T Consensus       351 tE~~~~~~~~~~~~~--------~~~~~~~vG~p~~~~-~v~i~d~~~~~~~~~g--~~GEl~v~g~~~~~gy~~~~~~~  419 (559)
T PRK08315        351 TETSPVSTQTRTDDP--------LEKRVTTVGRALPHL-EVKIVDPETGETVPRG--EQGELCTRGYSVMKGYWNDPEKT  419 (559)
T ss_pred             cccccceeecCcccc--------hhhccCCCCccCCCc-EEEEEcCccCCcCCCC--CceEEEEECchhhhhhcCChhHH
Confidence            999876654432211        112236889999999 6999999889999888  79999999999999999999988


Q ss_pred             hhhh-cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEec
Q 009756          381 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLK  459 (526)
Q Consensus       381 ~~~~-~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  459 (526)
                      ...| .++||+|||++++++||.++++||.+|+++++|.++++.+||.++.++++|.+++|++.+++..++.++++|+..
T Consensus       420 ~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  499 (559)
T PRK08315        420 AEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILR  499 (559)
T ss_pred             hhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeC
Confidence            8887 688999999999999999999999999999999999999999999999999999999999888788899999887


Q ss_pred             CCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCCccc
Q 009756          460 PEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPVKM  521 (526)
Q Consensus       460 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~~~  521 (526)
                      ++...     ..+++++++.++++.+++|..+.+++ ||+|++||++|.+|++++.+..+.+.
T Consensus       500 ~~~~~-----~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~~~~~~~  557 (559)
T PRK08315        500 PGATL-----TEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEELGLQA  557 (559)
T ss_pred             CCCCC-----CHHHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeHHHHHHHHHhhhchhh
Confidence            65443     45789999999999999999999988 99999999999999999988777654

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=3.7e-63  Score=512.64  Aligned_cols=474  Identities=27%  Similarity=0.393  Sum_probs=389.3

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.+++.++|.. |   ++.|+++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.++++++|+
T Consensus        58 y~~l~~~~~~la~~-L---~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~  133 (546)
T PLN02330         58 YGEVVRDTRRFAKA-L---RSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVT  133 (546)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEE
Confidence            68999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcC--CCCCCCCCCeEEEE
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFA--WKPPEDEWQSIALG  158 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~a~i~  158 (526)
                      ++.....+...    .         ..++.++...          ......|.++++.......  ......++++++++
T Consensus       134 ~~~~~~~~~~~----~---------~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il  190 (546)
T PLN02330        134 NDTNYGKVKGL----G---------LPVIVLGEEK----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALP  190 (546)
T ss_pred             ccchhhhHhhc----C---------CcEEEecCCC----------CCCcccHHHHHhhccccCcccccccCCcccEEEEE
Confidence            98876655322    1         2244443321          1223456666654322111  11224567899999


Q ss_pred             ecCCCCCCccceeecchhHHHHHHhhHhHhC--CcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecccCHHHHHHH
Q 009756          159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWG--MNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQVTAKAVYTA  235 (526)
Q Consensus       159 ~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~  235 (526)
                      |||||||.||+|.++|.++............  ....++++...|++|.+++.. .+.++..|++++....+++..+++.
T Consensus       191 ~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~  270 (546)
T PLN02330        191 FSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNA  270 (546)
T ss_pred             eCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHH
Confidence            9999999999999999998776543221111  123467888999999988764 4455666777777788999999999


Q ss_pred             HHhcCceeeeccHHHHHHHHccCCCCCCCCCC--ceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccc
Q 009756          236 IATHGVTHFCAAPVVLNAIANASPEDTILPLT--NVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCA  311 (526)
Q Consensus       236 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~--~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~  311 (526)
                      ++++++|.+.++|+++..+.......... +.  .+|.++++|+++++++.+++. .+ ++++++.||+||++.++..+.
T Consensus       271 i~~~~vt~~~~~P~~~~~l~~~~~~~~~~-~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  349 (546)
T PLN02330        271 LITQEVSFAPIVPPIILNLVKNPIVEEFD-LSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHG  349 (546)
T ss_pred             HHHcCCeeeecCCHHHHHHHhCccccccc-cchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCC
Confidence            99999999999999999998865443333 33  578999999999999999998 45 899999999999976544321


Q ss_pred             cCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeee
Q 009756          312 WKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFH  390 (526)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~  390 (526)
                      ....      ........++|.|++++ +++|+|++++++++.|  +.|||+++|+.++.||++++..+...+. +|||+
T Consensus       350 ~~~~------~~~~~~~~~vG~~~~~~-~v~i~d~~~~~~~p~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~  420 (546)
T PLN02330        350 DPEK------GHGIAKKNSVGFILPNL-EVKFIDPDTGRSLPKN--TPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLH  420 (546)
T ss_pred             Cccc------cccccccCccccccCCc-EEEEEeCCCCccCCCC--CceEEEEecchhhhhhccCccchhhhccCCCcee
Confidence            1100      00112236799999999 6999998779999988  7999999999999999999988887774 79999


Q ss_pred             cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhh
Q 009756          391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL  470 (526)
Q Consensus       391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  470 (526)
                      |||++++++||.+++.||.+|+|+++|++|+|.+||.++.+++.|.+++|++.+++..++.+.++|+..++...     .
T Consensus       421 TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~-----~  495 (546)
T PLN02330        421 TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKE-----S  495 (546)
T ss_pred             cccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCC-----C
Confidence            99999999999999999999999999999999999999999999999999999998889999999998765443     4


Q ss_pred             HHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          471 AEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       471 ~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      .++++++++++|+.+++|+.+.+++ ||+|++||++|+.|++++...
T Consensus       496 ~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~  542 (546)
T PLN02330        496 EEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSI  542 (546)
T ss_pred             HHHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence            5789999999999999999988888 999999999999999999765

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=1.1e-62  Score=509.81  Aligned_cols=477  Identities=25%  Similarity=0.363  Sum_probs=397.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||+++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        52 y~~l~~~v~~la~~-l---~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~  127 (547)
T PRK06087         52 YSALDHAASRLANW-L---LAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFA  127 (547)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccch-----HHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeE
Q 009756           81 DQEF-----FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI  155 (526)
Q Consensus        81 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a  155 (526)
                      ++..     ...+.+.....+       ....++.++.....         ....++.+++....... .......++++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~d~a  190 (547)
T PRK06087        128 PTLFKQTRPVDLILPLQNQLP-------QLQQIVGVDKLAPA---------TSSLSLSQIIADYEPLT-TAITTHGDELA  190 (547)
T ss_pred             ecccccccHHHHHHHHHhhCC-------CCcEEEEeCCcCCC---------cCccCHHHHhccCCccc-CCCCCCCCCeE
Confidence            7632     233333333333       34566666543211         12235566555433221 11224678999


Q ss_pred             EEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHH-HHHHhhcceeeeecccCHHHHHH
Q 009756          156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT-WSLAALCGTSICLRQVTAKAVYT  234 (526)
Q Consensus       156 ~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~  234 (526)
                      +|+|||||||.||+|.++|.++..........+++.+++++++..|++|.+++... +..+..|+++++....++..+++
T Consensus       191 ~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~  270 (547)
T PRK06087        191 AVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLA  270 (547)
T ss_pred             EEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHH
Confidence            99999999999999999999998888877777888999999999999999987644 44455677777778889999999


Q ss_pred             HHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCC
Q 009756          235 AIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKP  314 (526)
Q Consensus       235 ~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~  314 (526)
                      .++++++++++++|..+..+++........ ++++|.+++||+++++++.+.+.+.++++++.||+||++++....... 
T Consensus       271 ~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~-~~~lr~i~~gG~~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-  348 (547)
T PRK06087        271 LLEQQRCTCMLGATPFIYDLLNLLEKQPAD-LSALRFFLCGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDD-  348 (547)
T ss_pred             HHHHcCCCEEeccHHHHHHHHhccccCCCC-CCCeEEEEEcCCCCCHHHHHHHHHcCCcEEEEecccccCCccccCCCc-
Confidence            999999999999888777777765444444 789999999999999999999887899999999999998765543211 


Q ss_pred             CCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeecCc
Q 009756          315 EWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGD  393 (526)
Q Consensus       315 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD  393 (526)
                              .......++|.|++++ .++++|++ +.+++.|  +.|||+++|+.++.||+++++.+...|. +|||+|||
T Consensus       349 --------~~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD  416 (547)
T PRK06087        349 --------PLSRFMHTDGYAAAGV-EIKVVDEA-RKTLPPG--CEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGD  416 (547)
T ss_pred             --------chhhcCCcCCccCCCc-eEEEEcCC-CCCCcCC--CcceEEEecccccccccCCHHHHHHHhCCCCCcCcCc
Confidence                    0111225689999999 69999976 8888877  7899999999999999999999888884 78999999


Q ss_pred             eeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHH
Q 009756          394 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAED  473 (526)
Q Consensus       394 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  473 (526)
                      +++++++|.+++.||.+|+|+.+|.+++|.+||.++.++++|.+++|++.+++..++.++++++..+.....    ..++
T Consensus       417 l~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~----~~~~  492 (547)
T PRK06087        417 LCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSL----TLEE  492 (547)
T ss_pred             eEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCC----CHHH
Confidence            999999999999999999999999999999999999999999999999999888899999999987532221    4567


Q ss_pred             HHHHHH-hcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          474 VSKFCR-AKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       474 l~~~l~-~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      +.+++. +.++.+++|..+.+++ ||+|.+||++|+.|++++.+.
T Consensus       493 ~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~  537 (547)
T PRK06087        493 VVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRR  537 (547)
T ss_pred             HHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHH
Confidence            777775 6799999999999988 999999999999999998876

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=6.5e-63  Score=510.17  Aligned_cols=466  Identities=30%  Similarity=0.404  Sum_probs=385.1

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||+++++++|.+ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        56 y~eL~~~~~~~a~~-L---~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~  131 (538)
T TIGR03208        56 YRELDCRVDRIAVG-L---ARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVV  131 (538)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchH-----HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCc-------CCCCC
Q 009756           81 DQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEF-------AWKPP  148 (526)
Q Consensus        81 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~  148 (526)
                      ++...     ....+.....+       ....++.++...             ...++.++.......       .....
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (538)
T TIGR03208       132 PSVFRGFDHAAMARELQSKLP-------ALRQVVVIDGDG-------------DDSFDRVLMTPERDDTPDAAAILAGPR  191 (538)
T ss_pred             ccccccccHHHHHHHHhccCC-------cceEEEEecCCC-------------CcCHHHHhhccccccccccccccccCC
Confidence            87542     11222212111       234555554321             123333332211000       00112


Q ss_pred             CCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeeccc
Q 009756          149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQV  227 (526)
Q Consensus       149 ~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~  227 (526)
                      ..++++++++|||||||.||+|+++|+++...+......++++.++++++.+|++|..++.. .+.++..|+++++...+
T Consensus       192 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~  271 (538)
T TIGR03208       192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIW  271 (538)
T ss_pred             CCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCcc
Confidence            46789999999999999999999999999988888888888899999999999999888754 45556677777776778


Q ss_pred             CHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCC
Q 009756          228 TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGP  306 (526)
Q Consensus       228 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~  306 (526)
                      ++..+++.++++++|++.++|.++..+.......... ++++|.+++||+++++++.+++. .+++++++.||+||++++
T Consensus       272 ~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~-~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  350 (538)
T TIGR03208       272 NPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAP-VPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAV  350 (538)
T ss_pred             CHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCC-CCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCc
Confidence            9999999999999999999999999988765433334 78999999999999999999987 568999999999999876


Q ss_pred             ccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcC
Q 009756          307 ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN  386 (526)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~  386 (526)
                      .+.+....         ......++|.|.+++ .++|+|++ +++++.|  +.|||+++|+.++.||+++++.+.. ..+
T Consensus       351 ~~~~~~~~---------~~~~~~~~G~~~~g~-~v~i~~~~-~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~-~~~  416 (538)
T TIGR03208       351 TVTEPDDA---------LEKASTTDGRPLPGV-EVKVIDAN-GAKLSQG--ETGRLLVRGCSNFGGYLKRPHLNST-DAE  416 (538)
T ss_pred             cccCcccc---------hhhccCcccccCCCC-EEEEECCC-CCCCcCC--CCcEEEEecCcccccccCCcccccc-cCC
Confidence            55432110         011125789999999 69999986 8888877  7899999999999999999877653 357


Q ss_pred             CeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhh
Q 009756          387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELD  466 (526)
Q Consensus       387 g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  466 (526)
                      |||+|||+|+++++|.++++||.+|+|+.+|.+|+|.+||.+|.++++|.+++|++.++...++.+.++++..++...  
T Consensus       417 ~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~--  494 (538)
T TIGR03208       417 GWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTL--  494 (538)
T ss_pred             CceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCC--
Confidence            899999999999999999999999999999999999999999999999999999999998888999999998766443  


Q ss_pred             hhhhHHHHHHHHHh-cCCCccCCcEEEecc-ccCCCCccccHHHHH
Q 009756          467 KGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLR  510 (526)
Q Consensus       467 ~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~  510 (526)
                         ..+++.+++++ +++.+++|..+.+++ +|+|++||++|++|+
T Consensus       495 ---~~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~  537 (538)
T TIGR03208       495 ---DFAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR  537 (538)
T ss_pred             ---CHHHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence               45678888985 799999999999888 999999999999986

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.3e-63  Score=513.46  Aligned_cols=497  Identities=26%  Similarity=0.413  Sum_probs=400.4

Q ss_pred             CccchhhhhhcccccccCccC-CCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLL-FPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~-~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.+++.++|++ |   ++ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++|
T Consensus        41 y~el~~~~~~la~~-L---~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i  116 (576)
T PRK05620         41 FAAIGARAAALAHA-L---HDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIV  116 (576)
T ss_pred             HHHHHHHHHHHHHH-H---HHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEE
Confidence            78999999999999 8   86 7999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~  159 (526)
                      +++.....+.+.....+       ..+.++.++..................+|.++++........ ....++++++++|
T Consensus       117 ~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~a~i~~  188 (576)
T PRK05620        117 ADPRLAEQLGEILKECP-------CVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDW-PELDETTAAAICY  188 (576)
T ss_pred             EChhhHHHHHHHHhhCc-------cccEEEEecCcccccchhccccccccccHHHHhhcCCCcCCC-CCCCccceeEEEE
Confidence            99887777766655544       345555554332211111111223345678777643322211 2346789999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhh--HhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec-ccCHHHHHHHH
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNG--ALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR-QVTAKAVYTAI  236 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i  236 (526)
                      ||||||.||+|.++|.++.......  ...+.+..++++++.+|++|.+++...+.++..|+++++.. .+++..+++.+
T Consensus       189 TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i  268 (576)
T PRK05620        189 STGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKII  268 (576)
T ss_pred             CCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHH
Confidence            9999999999999999986554432  23467889999999999999999887777777788776653 57899999999


Q ss_pred             HhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCC
Q 009756          237 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       237 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      +++++|+++++|+.+..+.......... ..++|.+++||+++++++.+.+. .+++++++.||+||++..++.......
T Consensus       269 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  347 (576)
T PRK05620        269 ATAMPRVAHGVPTLWIQLMVHYLKNPPE-RMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSG  347 (576)
T ss_pred             HHhcCceeeecCHHHHHHHHHhhccCcc-cCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCc
Confidence            9999999999999999888764433333 56899999999999999999987 568999999999999876654332111


Q ss_pred             CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhh----h----------
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN----E----------  381 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~----~----------  381 (526)
                         ...........++|.+.+++ +++++|+  +..++...+..|||+++|+.++.||+++++.+    .          
T Consensus       348 ---~~~~~~~~~~~~~G~~~~~~-~~~i~~~--g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~  421 (576)
T PRK05620        348 ---VSGEARWAYRVSQGRFPASL-EYRIVND--GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVED  421 (576)
T ss_pred             ---cccccccccccccCCcCCce-eEEEecC--CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchh
Confidence               00011111224788888888 6999985  66665433368999999999999999998776    2          


Q ss_pred             --hhh-cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEe
Q 009756          382 --EAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTL  458 (526)
Q Consensus       382 --~~~-~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  458 (526)
                        ..| .+|||+|||++++++||.+++.||.+|+|+.+|.+|+|.+||.+|.++|.|.+++|++.++...|+.+++++++
T Consensus       422 ~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~  501 (576)
T PRK05620        422 ANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVL  501 (576)
T ss_pred             hhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEe
Confidence              223 37899999999999999999999999999999999999999999999999999999999999888999999988


Q ss_pred             cCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          459 KPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       459 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      .++....  ....++++++++++|+.+++|+.+.+++ ||+|.+||++|+.|++++.+.+.
T Consensus       502 ~~~~~~~--~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~~~~~~~~~  560 (576)
T PRK05620        502 APGIEPT--RETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQHLADGDF  560 (576)
T ss_pred             cCCCCcc--cccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCcHHHHHHHHhcCCc
Confidence            7764321  1256899999999999999999999988 99999999999999999987643

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.2e-63  Score=504.47  Aligned_cols=453  Identities=19%  Similarity=0.274  Sum_probs=383.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.||.++++++|++ |   .+.| .+|++|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        29 y~~l~~~~~~~a~~-L---~~~~-~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~  103 (487)
T PRK07638         29 YKDWFESVCKVANW-L---NEKE-SKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVT  103 (487)
T ss_pred             HHHHHHHHHHHHHH-H---HHhC-CCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEE
Confidence            78999999999999 9   8887 48999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +......+..             ....++.++.                  +.+.+........ ......+++++++||
T Consensus       104 ~~~~~~~~~~-------------~~~~~~~~~~------------------~~~~~~~~~~~~~-~~~~~~~~~a~i~~T  151 (487)
T PRK07638        104 ERYKLNDLPD-------------EEGRVIEIDE------------------WKRMIEKYLPTYA-PIENVQNAPFYMGFT  151 (487)
T ss_pred             ecccccchhh-------------ccceEEEehh------------------hhhhhhhcccccc-ccccCCCCcEEEEeC
Confidence            8865433321             0122333321                  1111111111111 112345678999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG  240 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  240 (526)
                      |||||.||+|+++|+++...+......+++.++|+++...|++|..++...+.++..|+++++.+.+++..+++.+++++
T Consensus       152 SGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~  231 (487)
T PRK07638        152 SGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQVLDKLETEN  231 (487)
T ss_pred             CCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcCCCCHHHHHHHHHHcC
Confidence            99999999999999999988888878888999999999999999888777778888899988888889999999999999


Q ss_pred             ceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCccccccCCCCCC
Q 009756          241 VTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPEWDS  318 (526)
Q Consensus       241 ~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~  318 (526)
                      +|++.++|+++..|.+....     ..+.+.++++|+.+++++.+++.+ + ++++++.||+||++.++......     
T Consensus       232 ~t~~~~~P~~~~~l~~~~~~-----~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-----  301 (487)
T PRK07638        232 ISVMYTVPTMLESLYKENRV-----IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEE-----  301 (487)
T ss_pred             CeEEEeCcHHHHHHHhCcCc-----CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccc-----
Confidence            99999999999999987321     345666788899999999999884 3 78999999999998655443211     


Q ss_pred             CCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEc
Q 009756          319 LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKH  398 (526)
Q Consensus       319 ~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~  398 (526)
                           ......++|.|++++ .++|+|++ |.+++.|  +.|||+++|+.++.||++++..+...+.+|||+|||+++++
T Consensus       302 -----~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d  372 (487)
T PRK07638        302 -----SERRPNSVGRPFHNV-QVRICNEA-GEEVQKG--EIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYED  372 (487)
T ss_pred             -----cCCCCCCCCcccCCc-EEEEECCC-CCCCCCC--CCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEc
Confidence                 112336889999999 69999987 8999887  79999999999999999999888887889999999999999


Q ss_pred             CCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHH
Q 009756          399 PDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFC  478 (526)
Q Consensus       399 ~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l  478 (526)
                      ++|++++.||.+|+|+.+|.+|+|.+||.++.++|+|.+++|++.+++..++.+.++++..    .     ..+++++++
T Consensus       373 ~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~----~-----~~~~l~~~~  443 (487)
T PRK07638        373 EEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGS----A-----TKQQLKSFC  443 (487)
T ss_pred             CCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECC----C-----CHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988888888888641    1     467899999


Q ss_pred             HhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          479 RAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       479 ~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      +++++.+++|..+++++ ||+|++||++|+.|++++.+.+.
T Consensus       444 ~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~  484 (487)
T PRK07638        444 LQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQEK  484 (487)
T ss_pred             HHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhcccc
Confidence            99999999999999888 99999999999999999887654

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=1.7e-63  Score=524.60  Aligned_cols=491  Identities=22%  Similarity=0.265  Sum_probs=377.3

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .++|+++||+|+|+++|+++|++++|||+++|+++||+++.++.+++.++|++++++++|+
T Consensus       109 y~el~~~v~~lA~~-L---~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~  184 (696)
T PLN02387        109 YGQVFERVCNFASG-L---VALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVIC  184 (696)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhh-hhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQL-EYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~  159 (526)
                      +.+....+.+.....+       ..+.++.+++........ .........+|+++++.+...........++|+++|+|
T Consensus       185 ~~~~~~~l~~~~~~~~-------~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~y  257 (696)
T PLN02387        185 DSKQLKKLIDISSQLE-------TVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMY  257 (696)
T ss_pred             CHHHHHHHHHHhhccC-------CceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEe
Confidence            9877776666555444       567888887542211000 00111224567777665433222222346799999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhhHhHh-CCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccC--------HH
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNGALIW-GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVT--------AK  230 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~  230 (526)
                      ||||||.||||++||+++.+.+......+ .+.++|++++++|++|.+++.....++..|+++.......        +.
T Consensus       258 TSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~  337 (696)
T PLN02387        258 TSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKK  337 (696)
T ss_pred             cCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhccccccccc
Confidence            99999999999999999988877765543 5788999999999999999877666666666554432211        23


Q ss_pred             HHHHHHHhcCceeeeccHHHHHHHHccCCCC-------------------------------CC---------------C
Q 009756          231 AVYTAIATHGVTHFCAAPVVLNAIANASPED-------------------------------TI---------------L  264 (526)
Q Consensus       231 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-------------------------------~~---------------~  264 (526)
                      .++..+++++||+++++|.+++.+.+.....                               ..               .
T Consensus       338 ~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (696)
T PLN02387        338 GTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAV  417 (696)
T ss_pred             CchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHH
Confidence            3567899999999999999999886531100                               00               0


Q ss_pred             CCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCcee
Q 009756          265 PLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDV  343 (526)
Q Consensus       265 ~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v  343 (526)
                      ..+++|.+++||+++++++.+.+. .+|+++++.||+||+++.++.....           ....+++|.|+|++ +++|
T Consensus       418 lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~-----------~~~~gsvG~p~p~~-evki  485 (696)
T PLN02387        418 LGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWD-----------DTSVGRVGPPLPCC-YVKL  485 (696)
T ss_pred             hCCcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcc-----------cCCCCccCCCCCce-EEEE
Confidence            015899999999999999998887 4699999999999998766543211           11237899999999 6999


Q ss_pred             ecCCCCC-ccCCCCCceEEEEEcCccccccccCChhhhhhhhc---CC--eeecCceeEEcCCceEEEeccccceeee-C
Q 009756          344 IDARTNQ-PVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA---NG--WFHSGDLAVKHPDNYIEIKDRLKDVIIS-G  416 (526)
Q Consensus       344 ~d~~~g~-~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~g--~~~tGD~~~~~~~g~~~~~GR~~d~i~~-~  416 (526)
                      +|.+++. .+.......|||+++|++++.||+++++.+.+.|.   +|  ||+|||+|++++||++++.||.+|+||. +
T Consensus       486 vd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~  565 (696)
T PLN02387        486 VSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQH  565 (696)
T ss_pred             eeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCC
Confidence            9943343 22111114699999999999999999999999983   35  9999999999999999999999999996 7


Q ss_pred             CeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCch----------h------hhhhhHHHHHHHH--
Q 009756          417 GENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE----------L------DKGKLAEDVSKFC--  478 (526)
Q Consensus       417 G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----------~------~~~~~~~~l~~~l--  478 (526)
                      |++|+|.+||.+|.++|.|.+++|++.+...   .++|+|+++++.-.          .      ...+..+++.+.+  
T Consensus       566 Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  642 (696)
T PLN02387        566 GEYVSLGKVEAALSVSPYVDNIMVHADPFHS---YCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSK  642 (696)
T ss_pred             CeEEchHHHHHHHhcCCCeeEEEEEecCCcc---eEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999977432   47888887643200          0      0011223333333  


Q ss_pred             ---HhcCCCccCCcEEEecc--cc-----CCCCccccHHHHHHHHHhcC
Q 009756          479 ---RAKMPSYWVPKSVVFAA--LP-----KSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       479 ---~~~l~~~~~p~~~~~~~--lP-----~t~~GKv~r~~l~~~~~~~~  517 (526)
                         +.+|+.|.+|+.+.+.+  +-     .|++.|+.|+.+++.|.+..
T Consensus       643 ~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~i  691 (696)
T PLN02387        643 AAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDL  691 (696)
T ss_pred             HHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHHHH
Confidence               34699999999998876  32     68899999999999998753

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.8e-62  Score=505.81  Aligned_cols=463  Identities=24%  Similarity=0.298  Sum_probs=372.2

Q ss_pred             CccchhhhhhcccccccCccCCCC-CCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPS-SPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.++++++|.+ |   .+.|+ ++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|
T Consensus        29 y~el~~~~~~la~~-L---~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i  104 (540)
T PRK13388         29 WREVLAEAAARAAA-L---IALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLV  104 (540)
T ss_pred             HHHHHHHHHHHHHH-H---HHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEE
Confidence            78999999999999 9   99999 7999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~  159 (526)
                      ++++....+.+..  .+        ...++.++..                .+.+++....... ......++++++++|
T Consensus       105 ~~~~~~~~~~~~~--~~--------~~~~i~~~~~----------------~~~~~~~~~~~~~-~~~~~~~~~~a~i~~  157 (540)
T PRK13388        105 TDAEHRPLLDGLD--LP--------GVRVLDVDTP----------------AYAELVAAAGALT-PHREVDAMDPFMLIF  157 (540)
T ss_pred             EChhhhHHHHhhc--cc--------CceEEEccch----------------hhhhhhccccCcC-CCCCCCCCCeEEEEE
Confidence            9887655443321  11        1233333221                2333333211111 111246789999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHH-HHhhcceeeeecccCHHHHHHHHHh
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWS-LAALCGTSICLRQVTAKAVYTAIAT  238 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~  238 (526)
                      ||||||.||+|.++|.++..........+++..+++++..+|++|..++...+. .+..|+++++.+.+++..+++.+++
T Consensus       158 TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~  237 (540)
T PRK13388        158 TSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDDVRR  237 (540)
T ss_pred             CCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHHHHH
Confidence            999999999999999999888888788889999999999999999988866554 4556666666666889999999999


Q ss_pred             cCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCCCC
Q 009756          239 HGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEWD  317 (526)
Q Consensus       239 ~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~  317 (526)
                      +++|++..+|..+..+.......... ...++.+ + |+.++++..+.+. .+++++++.||+||++.+++...   .  
T Consensus       238 ~~vt~~~~~p~~l~~l~~~~~~~~~~-~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~---~--  309 (540)
T PRK13388        238 YGATYFNYVGKPLAYILATPERPDDA-DNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP---G--  309 (540)
T ss_pred             hCCeEEEehHHHHHHHHhCCCCcccc-ccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCC---C--
Confidence            99999999999999988765432222 3456643 3 5566777777776 56899999999999986554321   0  


Q ss_pred             CCCcccccccccccceeeeecCCc-----------eeecCCCCCccCCCCCceEEEEEc-CccccccccCChhhhhhhhc
Q 009756          318 SLPFETQARLNARQGVRTICLDGL-----------DVIDARTNQPVPADGKTIGEIVMR-GSCVMKGYLKNPKANEEAFA  385 (526)
Q Consensus       318 ~~~~~~~~~~~~~~G~~~~~~~~~-----------~v~d~~~g~~~~~~~~~~Gel~v~-~~~~~~gy~~~~~~~~~~~~  385 (526)
                              ...+++|.|++++ .+           .++|.+ |+.+..+ ++.|||+++ |++++.||++++..+...|.
T Consensus       310 --------~~~~~vG~p~~g~-~i~~~~~~~~~~~~~~d~~-g~~~~~~-~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~  378 (540)
T PRK13388        310 --------TPPGSIGRGAPGV-AIYNPETLTECAVARFDAH-GALLNAD-EAIGELVNTAGAGFFEGYYNNPEATAERMR  378 (540)
T ss_pred             --------CCCCCCCCCCCCc-EEEcCCCCccccceeccCc-cccccCC-CcceEEEEecCCcccccccCChHHHHHHhh
Confidence                    1125788888765 22           133332 4444322 268999998 99999999999999999999


Q ss_pred             CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchh
Q 009756          386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADEL  465 (526)
Q Consensus       386 ~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  465 (526)
                      +|||+|||+|++++||.+++.||.+|+|+++|.+|+|.+||.++.++|+|.+|+|++.+++..|+.+++++++.++... 
T Consensus       379 ~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~-  457 (540)
T PRK13388        379 HGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATF-  457 (540)
T ss_pred             cCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcC-
Confidence            9999999999999999999999999999999999999999999999999999999999998888888888888766543 


Q ss_pred             hhhhhHHHHHHHHHh--cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          466 DKGKLAEDVSKFCRA--KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       466 ~~~~~~~~l~~~l~~--~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                          ..++++++++.  .|+.+++|..+.+++ ||+|++||++|++|+++..+...
T Consensus       458 ----~~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~~~  509 (540)
T PRK13388        458 ----DPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWATGD  509 (540)
T ss_pred             ----CHHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccCCCC
Confidence                44677788865  499999999999888 99999999999999998766644

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.8e-62  Score=507.69  Aligned_cols=484  Identities=27%  Similarity=0.422  Sum_probs=394.3

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        48 y~~l~~~~~~~a~~-L---~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~  123 (558)
T PRK12583         48 WRQLADAVDRLARG-L---LALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVIC  123 (558)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchH-----HHHHHHHHHhhhc------cCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCC-----cC
Q 009756           81 DQEFF-----SLAEEALKMMEAN------SEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE-----FA  144 (526)
Q Consensus        81 ~~~~~-----~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~  144 (526)
                      ++...     ..+.+........      ....+....++..+...          ..+...|++........     ..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  193 (558)
T PRK12583        124 ADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP----------PPGFLAWHELQARGETVSREALAE  193 (558)
T ss_pred             eccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCC----------CccccchHhhhhcccccccccccc
Confidence            86432     2222222221100      00011223334333221          11223444443332211     00


Q ss_pred             CCCCCCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee
Q 009756          145 WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL  224 (526)
Q Consensus       145 ~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~  224 (526)
                      ......++++++++|||||||.||+|.++|.++.+.+......+++..++++++..|++|..++...+...+.+|..+++
T Consensus       194 ~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~  273 (558)
T PRK12583        194 RQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVY  273 (558)
T ss_pred             cccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEe
Confidence            11123567899999999999999999999999998888888888999999999999999999987665555555555553


Q ss_pred             --cccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcC-Ceeeccccc
Q 009756          225 --RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKG-FRITHTYGL  300 (526)
Q Consensus       225 --~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~-~~i~~~YG~  300 (526)
                        ...++..+++.++++++|+++++|+++..+.......... ++++|.+++||+++++++.+.+. .++ ..+++.||+
T Consensus       274 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~  352 (558)
T PRK12583        274 PNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFD-LSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGM  352 (558)
T ss_pred             ecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCC-chhheEEEecCCCCCHHHHHHHHHHcCCcceeccccc
Confidence              3578899999999999999999999998888765544444 88999999999999999999987 454 579999999


Q ss_pred             ccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhh
Q 009756          301 TELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN  380 (526)
Q Consensus       301 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~  380 (526)
                      ||++.+++.+.....        ......++|.|.+++ .++|+|++ +.+++.|  +.|||+++|+.++.||++++..+
T Consensus       353 tE~~~~~~~~~~~~~--------~~~~~~~vG~p~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~  420 (558)
T PRK12583        353 TETSPVSLQTTAADD--------LERRVETVGRTQPHL-EVKVVDPD-GATVPRG--EIGELCTRGYSVMKGYWNNPEAT  420 (558)
T ss_pred             cccccceeccCcccc--------cccccCCCCccCCCC-eEEEECCC-CCCCCCC--CeeEEEEEeCccchhhcCChHHH
Confidence            999887665432111        112236889999999 69999998 8888887  79999999999999999999998


Q ss_pred             hhhh-cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEec
Q 009756          381 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLK  459 (526)
Q Consensus       381 ~~~~-~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  459 (526)
                      ...| .++||+|||++++++||++++.||.+|+|+++|.+|+|.+||+.+.++++|.+++|++.++...++.++++++..
T Consensus       421 ~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  500 (558)
T PRK12583        421 AESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLH  500 (558)
T ss_pred             HhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEEC
Confidence            8887 689999999999999999999999999999999999999999999999999999999999988888999999987


Q ss_pred             CCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          460 PEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       460 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      ++...     ..++++++++++|+.+++|..+.+++ ||+|++||++|++|+++..+.
T Consensus       501 ~~~~~-----~~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~~~~~  553 (558)
T PRK12583        501 PGHAA-----SEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIEE  553 (558)
T ss_pred             CCCCC-----CHHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHHHHHHHHhh
Confidence            65443     46789999999999999999999888 999999999999999987664

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.9e-62  Score=500.72  Aligned_cols=458  Identities=17%  Similarity=0.198  Sum_probs=348.8

Q ss_pred             cCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccch------HHHHHHHHHHhhhccCCCCCCCe
Q 009756           34 APNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEF------FSLAEEALKMMEANSEGKLKTPH  107 (526)
Q Consensus        34 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  107 (526)
                      +||++++++++|||+++|++++|+++.++.+++.++++.++++++|+++..      ...+.++....        ..+ 
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~--------~~~-   71 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAA--------PAK-   71 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcc--------cce-
Confidence            589999999999999999999999999999999999999999999998642      12222222111        112 


Q ss_pred             EEEEccCCCCchhhhhhhhcCcccHHHHHhhCCC------CcCCCCCCCCCCeEEEEecCCCCCCccceeecchhHHHHH
Q 009756          108 LIVIGDESCDSKQLEYALARGAIEYEKFLETGDP------EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMS  181 (526)
Q Consensus       108 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~  181 (526)
                      .+.+........ .  ....+..+|+++++....      ........+++++++|+|||||||.||+|++||.+++...
T Consensus        72 ~i~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~  148 (499)
T PLN03051         72 AIVLPAAGEPVA-V--PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCA  148 (499)
T ss_pred             EEEEeccCcccC-C--ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHH
Confidence            222221110000 0  000123456666532111      0101111356899999999999999999999999987776


Q ss_pred             HhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec-ccCHHHHHHHHHhcCceeeeccHHHHHHHHccCC-
Q 009756          182 LNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASP-  259 (526)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~-  259 (526)
                      ......+++..+|++++..|++|..++...+.++..|+++++.. .+++..+++.|+++++|++.++|+++..|.+... 
T Consensus       149 ~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~  228 (499)
T PLN03051        149 SDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAF  228 (499)
T ss_pred             HHHHHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcc
Confidence            65556678889999999999999998877777778888888776 3678999999999999999999999999987643 


Q ss_pred             -CCCCCCCCceeeEeccCCCCCHHHHHHHhh-c--CCeeecccccccCCCCccccccCCCCCCCCcccccccccccceee
Q 009756          260 -EDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT  335 (526)
Q Consensus       260 -~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  335 (526)
                       ....+ +++||.+++||++++++..+++.+ .  ++++++.||+||+++.++....  .        .....+++|.|.
T Consensus       229 ~~~~~~-~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~--~--------~~~~~~~~G~p~  297 (499)
T PLN03051        229 AMEGLD-WSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTL--L--------QPQAPGAFSTAS  297 (499)
T ss_pred             ccccCC-chhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccc--c--------CCCCCccccCCC
Confidence             22334 789999999999999999987765 3  4789999999998653332110  0        011236899999


Q ss_pred             eecCCceeecCCCCCccCCCCCceEEEEEcCccc--cccccCChhhhhhhhcCC----------eeecCceeEEcCCceE
Q 009756          336 ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV--MKGYLKNPKANEEAFANG----------WFHSGDLAVKHPDNYI  403 (526)
Q Consensus       336 ~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~--~~gy~~~~~~~~~~~~~g----------~~~tGD~~~~~~~g~~  403 (526)
                      +++ +++|+|++ |++++.|.++.|||+++|+.+  +.||++++. + ..+.+|          ||+|||+|++++||++
T Consensus       298 ~~~-~~~ivd~~-g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~-~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l  373 (499)
T PLN03051        298 LGT-RFVLLNDN-GVPYPDDQPCVGEVALAPPMLGASDRLLNADH-D-KVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYF  373 (499)
T ss_pred             CCc-eEEEECCC-CCCCCCCCCcceEEEEecCcCCCCccccCCcc-c-ceeeecCCccccCCcceeecCCeEEECCCCcE
Confidence            999 69999976 889988744589999999976  579997653 2 233344          7999999999999999


Q ss_pred             EEeccccceeeeCCeeechHHHHHHHHc-CCCeeeeEEEEcCCCCCC-ceeEEEE---EecCCCchhhhhhhHHHHHHHH
Q 009756          404 EIKDRLKDVIISGGENISSVEVEKVLYL-HPLVLEAAVVARPDERWG-ESPCAFV---TLKPEADELDKGKLAEDVSKFC  478 (526)
Q Consensus       404 ~~~GR~~d~i~~~G~~v~~~~ie~~l~~-~~~v~~~~v~~~~~~~~~-~~~~~~v---~~~~~~~~~~~~~~~~~l~~~l  478 (526)
                      +++||.||+||++|++|+|.|||++|.+ ||.|.+++|++.+++..| +.++++|   +++++....+.++..+.+++++
T Consensus       374 ~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l  453 (499)
T PLN03051        374 CVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAI  453 (499)
T ss_pred             EEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHH
Confidence            9999999999999999999999999986 999999999999999888 6888888   6665531111222445566666


Q ss_pred             HhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          479 RAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       479 ~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      +++|+.+..|..+.+++ ||+|++||++|++|++.+.+..+
T Consensus       454 ~~~l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~  494 (499)
T PLN03051        454 QTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKKELS  494 (499)
T ss_pred             HhhcCCccCCceEEEcCCCCCCCCccHHHHHHHHHHHHhhc
Confidence            77788767676788888 99999999999999998876655

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.6e-62  Score=503.53  Aligned_cols=478  Identities=28%  Similarity=0.363  Sum_probs=399.4

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|.. |   .+.|+++|++|+++++|++++++++|||+++|++++|+++..+.+++.++++.++++.+++
T Consensus        40 y~~l~~~~~~~a~~-L---~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~  115 (524)
T PRK06188         40 YGQLADRISRYIQA-F---EALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIV  115 (524)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc-hHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756           81 DQE-FFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~  159 (526)
                      ++. ......+.....+       ....++.+.....            ...+.+........ .......++++++++|
T Consensus       116 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~  175 (524)
T PRK06188        116 DPAPFVERALALLARVP-------SLKHVLTLGPVPD------------GVDLLAAAAKFGPA-PLVAAALPPDIAGLAY  175 (524)
T ss_pred             ecchhhHHHHHHhhhcC-------CceEEEEeCCccc------------hhhHHHhhhccCcc-cccccCCCCCeEEEEe
Confidence            876 3333333322222       2345555543311            01111111111111 1111234566999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhc
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATH  239 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  239 (526)
                      ||||||.||+|.++|.++...+......+++..++++++..|++|.+++. .+..++.|+++++.+..++..+++.++++
T Consensus       176 TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~  254 (524)
T PRK06188        176 TGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQ  254 (524)
T ss_pred             CCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHh
Confidence            99999999999999999999888888888999999999999999998875 45667788888888888999999999999


Q ss_pred             CceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCCCCC
Q 009756          240 GVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEWDS  318 (526)
Q Consensus       240 ~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~  318 (526)
                      ++|+++++|+++..+++........ ++++|.+++||++++++..+.+. .++..+++.||+||++..++.+....... 
T Consensus       255 ~~t~~~~~P~~l~~l~~~~~~~~~~-l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~-  332 (524)
T PRK06188        255 RITATFLVPTMIYALLDHPDLRTRD-LSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDP-  332 (524)
T ss_pred             CCEEEEehHHHHHHHHhCcCccCCC-CcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccc-
Confidence            9999999999999999887655555 88999999999999999888776 56888999999999976655443221100 


Q ss_pred             CCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEc
Q 009756          319 LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKH  398 (526)
Q Consensus       319 ~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~  398 (526)
                          .......++|.|++++ .++|+|++ +++++.|  +.|||+++|+.++.||++++..+...|.+|||+|||+++++
T Consensus       333 ----~~~~~~~~~G~p~~g~-~v~i~~~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~  404 (524)
T PRK06188        333 ----DDPKRLTSCGRPTPGL-RVALLDED-GREVAQG--EVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVARED  404 (524)
T ss_pred             ----cccccCCccccccCCc-EEEEEcCC-CCCCCCC--CeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEc
Confidence                0112336789999999 59999987 8898887  79999999999999999999999999999999999999999


Q ss_pred             CCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHH
Q 009756          399 PDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFC  478 (526)
Q Consensus       399 ~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l  478 (526)
                      ++|.+++.||.+++++++|++++|.+||.+|.++++|.+++|++.+++..++.+.++++..+....     ..+++++++
T Consensus       405 ~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~  479 (524)
T PRK06188        405 EDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAV-----DAAELQAHV  479 (524)
T ss_pred             CCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCC-----CHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988888999999998765544     467899999


Q ss_pred             HhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          479 RAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       479 ~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      ++.++.+++|..+++++ ||+|++||++|++|++++.+...
T Consensus       480 ~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~~~~  520 (524)
T PRK06188        480 KERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWEGRG  520 (524)
T ss_pred             HHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHhhcc
Confidence            99999999999999988 99999999999999999865543

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.7e-63  Score=520.53  Aligned_cols=476  Identities=22%  Similarity=0.264  Sum_probs=375.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeec-cCccC--hHHHHHHHhhcCceE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSI-NIRLN--ATVVAFILSHASSAV   77 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~   77 (526)
                      |+||.++++++|++ |   ++. +++||+|+++++|++++++++|||+++|++++|+ ++..+  .+++.++++.+++++
T Consensus        58 y~el~~~v~~lA~~-L---~~~-~~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~  132 (631)
T PRK07769         58 WSQFGARNRAVGAR-L---QQV-TKPGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSA  132 (631)
T ss_pred             HHHHHHHHHHHHHH-H---HHh-cCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCE
Confidence            78999999999999 8   776 8999999999999999999999999999999999 45554  578999999999999


Q ss_pred             EEEccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEE
Q 009756           78 VIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIAL  157 (526)
Q Consensus        78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i  157 (526)
                      +|++++....+.+.....+..     ....++.++....                  ..   .... ......++++++|
T Consensus       133 vi~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~------------------~~---~~~~-~~~~~~~~d~a~i  185 (631)
T PRK07769        133 ILTTTDSAEGVRKFFRARPAK-----ERPRVIAVDAVPD------------------EV---GATW-VPPEANEDTIAYL  185 (631)
T ss_pred             EEEChHHHHHHHHHHhhcccc-----ccceEEEcccccc------------------cc---cccc-CCCCCCCCCeEEE
Confidence            999987766555443322200     1233444332100                  00   0000 0112456899999


Q ss_pred             EecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc--c--CHHHHH
Q 009756          158 GYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ--V--TAKAVY  233 (526)
Q Consensus       158 ~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--~--~~~~~~  233 (526)
                      +|||||||.||+|++||.++...+......+++..+++++..+|++|.+++...+.+++.|++++++..  +  ++..++
T Consensus       186 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  265 (631)
T PRK07769        186 QYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWI  265 (631)
T ss_pred             EeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHH
Confidence            999999999999999999999888877777888999999999999999999887888888888887742  3  888999


Q ss_pred             HHHHhcCc---eeeeccHHHHHHHHccC--CC---CCCCCCCceeeEeccCCCCCHHHHHHHhh-c---CC---eeeccc
Q 009756          234 TAIATHGV---THFCAAPVVLNAIANAS--PE---DTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K---GF---RITHTY  298 (526)
Q Consensus       234 ~~i~~~~~---t~l~~~P~~~~~l~~~~--~~---~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~---~~---~i~~~Y  298 (526)
                      +.++++++   +.+.++|.++..+....  ..   ...+ ++++|.+++||+++++++.+++.+ +   |+   .+++.|
T Consensus       266 ~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~-l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~Y  344 (631)
T PRK07769        266 RELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLD-LSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSY  344 (631)
T ss_pred             HHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcc-hhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhccccc
Confidence            99999886   78999998877766431  11   1233 789999999999999999999874 3   33   599999


Q ss_pred             ccccCCCCccccccCCCCCC---------------C-CcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEE
Q 009756          299 GLTELTGPASVCAWKPEWDS---------------L-PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEI  362 (526)
Q Consensus       299 G~tE~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel  362 (526)
                      |+||++++++..........               . +.........++|.|.++. .++|+|+++|++++.|  +.|||
T Consensus       345 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~-~~~ivd~~~g~~~~~g--e~GEl  421 (631)
T PRK07769        345 GMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSE-WAVIVDPETASELPDG--QIGEI  421 (631)
T ss_pred             chhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCc-EEEEEcCCCCcCCCCC--CEEEE
Confidence            99998765544321110000               0 0000011225789999998 5999998779999888  89999


Q ss_pred             EEcCccccccccCChhhhhhhhc------------------CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHH
Q 009756          363 VMRGSCVMKGYLKNPKANEEAFA------------------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVE  424 (526)
Q Consensus       363 ~v~~~~~~~gy~~~~~~~~~~~~------------------~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~  424 (526)
                      +++|++++.||+++++.+...|.                  +|||+|||+|+++ ||+++++||.||+||++|++|+|.+
T Consensus       422 ~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~e  500 (631)
T PRK07769        422 WLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQD  500 (631)
T ss_pred             EecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHH
Confidence            99999999999999999988884                  3899999999996 9999999999999999999999999


Q ss_pred             HHHHHHc-CCCeee--eEEEEcCC-------------------CCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHhcC
Q 009756          425 VEKVLYL-HPLVLE--AAVVARPD-------------------ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKM  482 (526)
Q Consensus       425 ie~~l~~-~~~v~~--~~v~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l  482 (526)
                      ||.+|.+ +|.|.+  ++|+++++                   +..++.+++++++.++....    ...+|.+++++++
T Consensus       501 IE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~----~~~~l~~~~~~~l  576 (631)
T PRK07769        501 LEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKL----DPQPIADDIRAAI  576 (631)
T ss_pred             HHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccccc----cHHHHHHHHHHHH
Confidence            9999986 899998  89999888                   55788999999988763221    4578889999988


Q ss_pred             CC-cc-CCcEEEecc---ccCCCCccccHHHHHHHHHhcC
Q 009756          483 PS-YW-VPKSVVFAA---LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       483 ~~-~~-~p~~~~~~~---lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                      +. ++ .|+.+.+++   ||+|++|||+|++|++.+.+..
T Consensus       577 ~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~~~  616 (631)
T PRK07769        577 AVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDGS  616 (631)
T ss_pred             HHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHcCC
Confidence            85 56 477777663   9999999999999999987553

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-62  Score=500.86  Aligned_cols=463  Identities=31%  Similarity=0.467  Sum_probs=388.6

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.||.+++.++|.+ |   .+.|+++|++|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        30 y~el~~~v~~~a~~-L---~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~  105 (497)
T PRK06145         30 YAEFHQRILQAAGM-L---HARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLV  105 (497)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++......     .         ....+.++....             ..+..+ ..............++++++++||
T Consensus       106 ~~~~~~~~~-----~---------~~~~~~~~~~~~-------------~~~~~~-~~~~~~~~~~~~~~~~~~a~i~~T  157 (497)
T PRK06145        106 DEEFDAIVA-----L---------ETPKIVIDAAAQ-------------ADSRRL-AQGGLEIPPQAAVAPTDLVRLMYT  157 (497)
T ss_pred             ccchhhhhh-----c---------ccceEEecCccc-------------chhHHH-hccCCCCCCCCCCCccceEEEEeC
Confidence            876543221     0         112223322110             001111 111111111123467899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecccCHHHHHHHHHhc
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQVTAKAVYTAIATH  239 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  239 (526)
                      |||||.||+|+++|.++...+......+++..+++++...|++|.+++.. .+..+..|+++++.+.+++..+++.++++
T Consensus       158 SGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~  237 (497)
T PRK06145        158 SGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERH  237 (497)
T ss_pred             CCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHHHHHh
Confidence            99999999999999998877666666778899999999999999988754 35566778877777788999999999999


Q ss_pred             CceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCccccccCCCCC
Q 009756          240 GVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPEWD  317 (526)
Q Consensus       240 ~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~  317 (526)
                      ++|.+.++|+++..++......... ++++|.+++||+++++++.+.+.+ + +.++++.||+||+++..+......   
T Consensus       238 ~~t~~~~~P~~~~~ll~~~~~~~~~-~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~---  313 (497)
T PRK06145        238 RLTCAWMAPVMLSRVLTVPDRDRFD-LDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGR---  313 (497)
T ss_pred             CCeEEEehHHHHHHHHcCCCccccc-cccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCcc---
Confidence            9999999999999999876555555 789999999999999999999874 4 678999999999987554332211   


Q ss_pred             CCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEE
Q 009756          318 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVK  397 (526)
Q Consensus       318 ~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~  397 (526)
                            .....+++|.|++++ .++++|++ ++.++.+  +.|||+++|++++.||++++..+...|.++||+|||++++
T Consensus       314 ------~~~~~~~~G~~~~~~-~~~i~~~~-~~~~~~~--~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~  383 (497)
T PRK06145        314 ------EIEKIGSTGRALAHV-EIRIADGA-GRWLPPN--MKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYL  383 (497)
T ss_pred             ------ccccCCCcccCCCCc-eEEEECCC-CCCCCCC--CceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEE
Confidence                  111235789999999 69999976 8888877  7999999999999999999999999999999999999999


Q ss_pred             cCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHH
Q 009756          398 HPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKF  477 (526)
Q Consensus       398 ~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  477 (526)
                      +++|++++.||.||+|+.+|.+++|.+||..|.++++|.+++|++.+++..++.+.+++++.+....     ..+++.++
T Consensus       384 ~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~  458 (497)
T PRK06145        384 DEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATL-----TLEALDRH  458 (497)
T ss_pred             cCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCC-----CHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998888999999998765443     45789999


Q ss_pred             HHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHH
Q 009756          478 CRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK  514 (526)
Q Consensus       478 l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~  514 (526)
                      ++++|+.+++|..+.+++ ||+|++||++|++|++++.
T Consensus       459 ~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        459 CRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             HHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence            999999999999999888 9999999999999998764

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=3.9e-62  Score=502.95  Aligned_cols=472  Identities=25%  Similarity=0.327  Sum_probs=397.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.+++.++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++.++++++|+
T Consensus        28 y~~l~~~v~~~a~~-l---~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~  103 (515)
T TIGR03098        28 YAALSERVLALASG-L---RGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVT  103 (515)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+.......+       ....++.+++......     .......|+++.......  .......+++++++||
T Consensus       104 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~T  169 (515)
T TIGR03098       104 SSERLDLLHPALPGCH-------DLRTLILVGEPAHASE-----GGGESPSWPKLLALGDAD--PPHPVIDSDMAAILYT  169 (515)
T ss_pred             ccchhhhhHhhhhccc-------ccceEEEecCcccccC-----CccccccHHHhhcccccc--ccCCCCcCCeEEEEEC
Confidence            8876665554443333       3455666665432110     112234566655433221  1122456789999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG  240 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  240 (526)
                      |||||.||+|.+||.++...+......+.+..++++++..|++|.+++...+.++..|+++++.+..++..+++.+++++
T Consensus       170 SGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~  249 (515)
T TIGR03098       170 SGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHDYLLPRDVLKALEKHG  249 (515)
T ss_pred             CCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEcCCCCHHHHHHHHHHcC
Confidence            99999999999999999988888777788899999999999999999988888888999998888889999999999999


Q ss_pred             ceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCccccccCCCCCC
Q 009756          241 VTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPEWDS  318 (526)
Q Consensus       241 ~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~  318 (526)
                      +|++.++|+++..|.+..... .. ++++|.++++|+++++++.+.+++ + +..+++.||+||++.......       
T Consensus       250 ~t~~~~~P~~~~~l~~~~~~~-~~-~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-------  320 (515)
T TIGR03098       250 ITGLAAVPPLWAQLAQLDWPE-SA-APSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPP-------  320 (515)
T ss_pred             CceEecChHHHHHHHhcccCC-CC-ccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEeccc-------
Confidence            999999999999998753222 23 789999999999999999999985 4 788999999999875433211       


Q ss_pred             CCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc------------C
Q 009756          319 LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA------------N  386 (526)
Q Consensus       319 ~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~------------~  386 (526)
                         ........++|.|++++ .++|+|+. +..++.+  +.|||+++|+.++.||++++..+...|.            +
T Consensus       321 ---~~~~~~~~~vG~~~~~~-~~~i~~~~-~~~~~~~--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~  393 (515)
T TIGR03098       321 ---EEVDRRPDSIGKAIPNA-EVLVLRED-GSECAPG--EEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPE  393 (515)
T ss_pred             ---ccccCCCCCcceecCCC-EEEEECCC-CCCCCCC--CceEEEEcCchhhccccCCchhhhhhhhccCCccccccccc
Confidence               11122347899999999 59999976 8888877  7999999999999999999888776653            2


Q ss_pred             CeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhh
Q 009756          387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELD  466 (526)
Q Consensus       387 g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  466 (526)
                      +||+|||+|+++++|.+++.||.+|+|+.+|.+|+|.+||+++.++|.|.+++|++.+++..++.++++++...+...  
T Consensus       394 ~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~--  471 (515)
T TIGR03098       394 LAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEEL--  471 (515)
T ss_pred             cceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCC--
Confidence            489999999999999999999999999999999999999999999999999999999999889999999886554433  


Q ss_pred             hhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHH
Q 009756          467 KGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA  511 (526)
Q Consensus       467 ~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~  511 (526)
                         ..++++++++++++.+++|..+++++ ||+|.+||++|++|++
T Consensus       472 ---~~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       472 ---DRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA  514 (515)
T ss_pred             ---CHHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence               46789999999999999999999988 9999999999999964

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.6e-62  Score=500.28  Aligned_cols=456  Identities=25%  Similarity=0.382  Sum_probs=379.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.||.++++++|++ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        25 y~~l~~~v~~~a~~-l---~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~  100 (488)
T PRK09088         25 YAELDALVGRLAAV-L---RRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLLG  100 (488)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEE
Confidence            68999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCC-cCCCCCCCCCCeEEEEe
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE-FAWKPPEDEWQSIALGY  159 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~i~~  159 (526)
                      ++.....                 ....                     ..++++....... .........+++++++|
T Consensus       101 ~~~~~~~-----------------~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  142 (488)
T PRK09088        101 DDAVAAG-----------------RTDV---------------------EDLAAFIASADALEPADTPSIPPERVSLILF  142 (488)
T ss_pred             cchhhcc-----------------cccc---------------------cchhhhhhhccccccccCCCCCCCCceEEEe
Confidence            8653220                 0000                     1111111111110 00111235678999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHh-hcceeeeecccCHHHHHHHHH-
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA-LCGTSICLRQVTAKAVYTAIA-  237 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~i~-  237 (526)
                      ||||||.||+|.++|+++...+...........++++++..|++|.+++...+...+ .|+++++...+++..++..+. 
T Consensus       143 TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~  222 (488)
T PRK09088        143 TSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGD  222 (488)
T ss_pred             CCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHh
Confidence            999999999999999999887777776677889999999999999999876555544 455555556778888888886 


Q ss_pred             -hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCC
Q 009756          238 -THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW  316 (526)
Q Consensus       238 -~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~  316 (526)
                       ++++|.++++|.++..+.+........ ++++|.+++||++++++..+.+.+.++++++.||+||++.+.......   
T Consensus       223 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~---  298 (488)
T PRK09088        223 PALGITHYFCVPQMAQAFRAQPGFDAAA-LRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSVDC---  298 (488)
T ss_pred             hccCCcEEeeHHHHHHHHHhCcCcCccc-cccceEEEecCCCCCHHHHHHHHHhCCceeeeecccccccccccCCCc---
Confidence             489999999999999998765444344 789999999999999999888886689999999999998654321110   


Q ss_pred             CCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeecCcee
Q 009756          317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLA  395 (526)
Q Consensus       317 ~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~  395 (526)
                           .......+++|.|.+++ +++|+|++ +.+++.+  +.|||+++|++++.||++++..+...|. +|||+|||+|
T Consensus       299 -----~~~~~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~  369 (488)
T PRK09088        299 -----DVIRAKAGAAGIPTPTV-QTRVVDDQ-GNDCPAG--VPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIA  369 (488)
T ss_pred             -----ccccccCCccccCCCCc-EEEEECCC-CCCCcCC--CceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceE
Confidence                 00111236799999999 59999976 8888877  7899999999999999999998888775 8999999999


Q ss_pred             EEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHH
Q 009756          396 VKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVS  475 (526)
Q Consensus       396 ~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~  475 (526)
                      +++++|.+++.||.+|+|+.+|.+++|.+||.+|.+++.|.+++|++.+++..++..+++++..++...     ..+++.
T Consensus       370 ~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~-----~~~~l~  444 (488)
T PRK09088        370 RRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPL-----DLERIR  444 (488)
T ss_pred             EEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCC-----CHHHHH
Confidence            999999999999999999999999999999999999999999999999988778888899888765443     457899


Q ss_pred             HHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          476 KFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       476 ~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      ++++++++.+++|..+.+++ ||+|++||++|++|++++.+.
T Consensus       445 ~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~~  486 (488)
T PRK09088        445 SHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAAG  486 (488)
T ss_pred             HHHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHhc
Confidence            99999999999999999888 999999999999999998764

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=6.1e-62  Score=501.66  Aligned_cols=465  Identities=24%  Similarity=0.347  Sum_probs=383.0

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|.+ |   .+.|+++|++|+++++|++++++++|||+++|++++++++..+.+++.++++.++++++++
T Consensus        51 y~el~~~~~~~a~~-L---~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~  126 (527)
T TIGR02275        51 YRELDQRADNLAAG-L---TKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYII  126 (527)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHH-----HHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeE
Q 009756           81 DQEFFS-----LAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI  155 (526)
Q Consensus        81 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a  155 (526)
                      ++....     .........+       ....++.......            ...+...+....... ......+++++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-~~~~~~~~~~a  186 (527)
T TIGR02275       127 DRAHSLFDYDAFARQLQSKLP-------TLRNIIVAGQTRV------------EAELFLWLESPAEPV-KFPPTKSDEVA  186 (527)
T ss_pred             cCcccccchHHHHHHHHhhCC-------cceEEEEecCCCC------------cchhhHHhhCcCccc-cCCCCCCCccE
Confidence            875421     1111111111       2333443322100            011111122111111 11234678999


Q ss_pred             EEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH--HHHHHhhcceeeeecccCHHHHH
Q 009756          156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY--TWSLAALCGTSICLRQVTAKAVY  233 (526)
Q Consensus       156 ~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~  233 (526)
                      +++|||||||.||+|.+||.++...+......+.++.+++++..+|++|.+++..  .+..+..|+++++.+..++..++
T Consensus       187 ~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~  266 (527)
T TIGR02275       187 FFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCF  266 (527)
T ss_pred             EEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHH
Confidence            9999999999999999999999988888777888999999999999999988764  56666777777776778899999


Q ss_pred             HHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcccccc
Q 009756          234 TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAW  312 (526)
Q Consensus       234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~  312 (526)
                      +.++++++|+++++|+++..|.+........ ++++|.+++||+++++++.+.+. .++.++++.||+||++....... 
T Consensus       267 ~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~-  344 (527)
T TIGR02275       267 PLIERHKVTVTALVPPAVALWMQAASKSRYD-LSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLD-  344 (527)
T ss_pred             HHHHHhCCeEEEecHHHHHHHHhCccccCCC-ccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCC-
Confidence            9999999999999999999998876655555 88999999999999999999997 56999999999999653322110 


Q ss_pred             CCCCCCCCcccccccccccceeee-ecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeee
Q 009756          313 KPEWDSLPFETQARLNARQGVRTI-CLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFH  390 (526)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~  390 (526)
                      .         .......++|.|++ +. .++++|++ |++++.|  +.|||+++|+.++.||+++++.+...|. +|||+
T Consensus       345 ~---------~~~~~~~~~G~~~~~~~-~v~i~d~~-g~~~~~g--~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~  411 (527)
T TIGR02275       345 D---------PAEIIFTTQGRPMSPDD-EVRVVDDH-GNPVAPG--ETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYY  411 (527)
T ss_pred             C---------ccccccccCCCCCCCCc-eEEEECCC-CCCCCCC--CceEEEecCCccchhhcCChhHhHhhcCcCCCEE
Confidence            0         01122357899985 55 69999977 8888887  8999999999999999999999888884 79999


Q ss_pred             cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhh
Q 009756          391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL  470 (526)
Q Consensus       391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  470 (526)
                      |||+++++++|++++.||.+|+|+.+|.+|+|.+||++|.++|+|.+++|++.++...++.++++++..++. .     .
T Consensus       412 TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~-~-----~  485 (527)
T TIGR02275       412 TGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPA-L-----K  485 (527)
T ss_pred             cCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCC-C-----C
Confidence            999999999999999999999999999999999999999999999999999999998889999999887653 2     4


Q ss_pred             HHHHHHHHHhc-CCCccCCcEEEecc-ccCCCCccccHHHHH
Q 009756          471 AEDVSKFCRAK-MPSYWVPKSVVFAA-LPKSATGKIQKHLLR  510 (526)
Q Consensus       471 ~~~l~~~l~~~-l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~  510 (526)
                      ..+++++++++ ++.+++|..+.+++ ||+|++||++|+.|+
T Consensus       486 ~~~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~  527 (527)
T TIGR02275       486 AAQLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR  527 (527)
T ss_pred             HHHHHHHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence            57899999875 99999999999888 999999999999874

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=8.5e-63  Score=495.02  Aligned_cols=426  Identities=18%  Similarity=0.182  Sum_probs=352.9

Q ss_pred             CccchhhhhhcccccccCccCCCC-CCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPS-SPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.+++.++|++ |   ++.|+ ++|++|+++++|++++++++|||+++|++++|+++.++..++.++++.+++++++
T Consensus        22 ~~el~~~~~~~a~~-L---~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i   97 (452)
T PRK07445         22 SQRFYQLAQQLYLQ-L---QQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIW   97 (452)
T ss_pred             hHHHHHHHHHHHHH-H---HHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEE
Confidence            68999999999999 9   99988 5799999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~  159 (526)
                      ++++....                 .     ....                .        ..    .....++++++++|
T Consensus        98 ~~~~~~~~-----------------~-----~~~~----------------~--------~~----~~~~~~~~~~~i~~  127 (452)
T PRK07445         98 GLDQLKLS-----------------H-----PPPL----------------P--------SQ----GILPNLETGWIMIP  127 (452)
T ss_pred             ecCccccc-----------------c-----CCCC----------------C--------cc----ccCCCCCCcEEEEe
Confidence            87653210                 0     0000                0        00    01134578999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhc
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATH  239 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  239 (526)
                      ||||||.||+|++||+++.+.+......+++.+ ++.++.+|++|.+|+...+.++..|+++++.+.............+
T Consensus       128 TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~  206 (452)
T PRK07445        128 TGGSSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNP  206 (452)
T ss_pred             CCCCCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhc
Confidence            999999999999999999888877776666654 4577889999999998777888888888777532222223344578


Q ss_pred             CceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCCCC
Q 009756          240 GVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL  319 (526)
Q Consensus       240 ~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~  319 (526)
                      ++++++++|++++.+.+..   ... ++++|.+++||+++++++.+++...++++++.||+||++..++.....      
T Consensus       207 ~~t~~~~vP~~l~~l~~~~---~~~-l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~------  276 (452)
T PRK07445        207 SDFFLSLVPTQLQRLLQLR---PQW-LAQFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQIATLKPD------  276 (452)
T ss_pred             CceEEEehHHHHHHHHhhC---hhh-hhcceEEEECCccCCHHHHHHHHhcCCeEecCcchhhhcccccccCch------
Confidence            8999999999999998732   122 789999999999999999998887799999999999997654332110      


Q ss_pred             CcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcC
Q 009756          320 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP  399 (526)
Q Consensus       320 ~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~  399 (526)
                         .......++|.|.+++ +++|+         .+  +.|||+++|+.++.||+++...     .+|||+|||++++++
T Consensus       277 ---~~~~~~~~~G~~~p~~-~v~i~---------~g--~~Gel~v~g~~~~~gY~~~~~~-----~~g~~~TGDl~~~d~  336 (452)
T PRK07445        277 ---DFLAGNNSSGQVLPHA-QITIP---------AN--QTGNITIQAQSLALGYYPQILD-----SQGIFETDDLGYLDA  336 (452)
T ss_pred             ---hhccCCCcCCccCCCC-eEEEc---------CC--CcceEEEeCCccchhhcCCccC-----CCCEEECCCEEEEcC
Confidence               0011235789999998 58887         12  5799999999999999975331     368999999999999


Q ss_pred             CceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHH
Q 009756          400 DNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCR  479 (526)
Q Consensus       400 ~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~  479 (526)
                      ||++++.||.||+|+.+|++|+|.+||.+|.++|+|.+++|++.+++..|+.++++++..++. .     ..++++++++
T Consensus       337 dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~-~-----~~~~l~~~~~  410 (452)
T PRK07445        337 QGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPS-I-----SLEELKTAIK  410 (452)
T ss_pred             CCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCCC-C-----CHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998899999999886552 2     3578999999


Q ss_pred             hcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          480 AKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       480 ~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                      ++|+.|++|+.+.+++ ||+|++||++|+.|++++.+..
T Consensus       411 ~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  449 (452)
T PRK07445        411 DQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRL  449 (452)
T ss_pred             HhCCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHhh
Confidence            9999999999999888 9999999999999999987754

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=1.3e-61  Score=498.70  Aligned_cols=471  Identities=23%  Similarity=0.355  Sum_probs=387.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .++|+++||+|+++++|+.++++++|||+++|++++|+++..+.+++.++++.++++++++
T Consensus        40 y~~l~~~v~~la~~-L---~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~  115 (517)
T PRK08008         40 YLELNEEINRTANL-F---YSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVT  115 (517)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEE
Confidence            78999999999999 9   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+.++.....      ...+.++..+....        ...+..++.+.............+..++++++++||
T Consensus       116 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T  181 (517)
T PRK08008        116 SAQFYPMYRQIQQEDA------TPLRHICLTRVALP--------ADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFT  181 (517)
T ss_pred             ecchhHHHHHHHhhcc------ccCcEEEEecCCCc--------ccccccCHHHHhccCCccccccCCCCCCCeEEEEEC
Confidence            9987776666544322      02344555443211        112345565554443322222223466899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecccCHHHHHHHHHhc
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQVTAKAVYTAIATH  239 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  239 (526)
                      |||||.||+|.+||.++............+..++++++.+|++|..+... .+.++..|+++++...+++..+++.++++
T Consensus       182 SGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~  261 (517)
T PRK08008        182 SGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKY  261 (517)
T ss_pred             CCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHHHHHHHHHHc
Confidence            99999999999999998765443333345788999999999999866544 45555677777777788999999999999


Q ss_pred             CceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCCCCC
Q 009756          240 GVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEWDS  318 (526)
Q Consensus       240 ~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~  318 (526)
                      ++|++.++|.+++.+.......... ...++.+..+ .+++++....+. .++.++++.||+||+++.++......    
T Consensus       262 ~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~----  335 (517)
T PRK08008        262 RATITECIPMMIRTLMVQPPSANDR-QHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGD----  335 (517)
T ss_pred             CCcEEechHHHHHHHHhCCCccccc-cccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccc----
Confidence            9999999999999988765444333 4677777765 478888888877 56999999999999986554332111    


Q ss_pred             CCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcC---ccccccccCChhhhhhhhc-CCeeecCce
Q 009756          319 LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG---SCVMKGYLKNPKANEEAFA-NGWFHSGDL  394 (526)
Q Consensus       319 ~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~---~~~~~gy~~~~~~~~~~~~-~g~~~tGD~  394 (526)
                            .....++|.|++++ +++|+|++ +++++.|  +.|||+++|   ++++.||+++++.+.+.|. +|||+|||+
T Consensus       336 ------~~~~~~~G~~~~g~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl  405 (517)
T PRK08008        336 ------KRRWPSIGRPGFCY-EAEIRDDH-NRPLPAG--EIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDT  405 (517)
T ss_pred             ------cccCCccccCCCCc-EEEEECCC-CCCCCCC--CcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccce
Confidence                  11236799999999 69999976 8899887  799999998   5899999999999998885 899999999


Q ss_pred             eEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHH
Q 009756          395 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDV  474 (526)
Q Consensus       395 ~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l  474 (526)
                      +++++||.+++.||.+|+|+.+|.+++|.+||.++.+++.|.+++|++.++...++.+.++++++++...     ..+++
T Consensus       406 ~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~-----~~~~l  480 (517)
T PRK08008        406 GYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETL-----SEEEF  480 (517)
T ss_pred             EEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCC-----CHHHH
Confidence            9999999999999999999999999999999999999999999999999998888899999998876543     45789


Q ss_pred             HHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHH
Q 009756          475 SKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLR  510 (526)
Q Consensus       475 ~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~  510 (526)
                      .++++++++.+++|..+.+++ ||+|++||++|+.|+
T Consensus       481 ~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~  517 (517)
T PRK08008        481 FAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK  517 (517)
T ss_pred             HHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence            999999999999999999888 999999999999874

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.9e-62  Score=513.63  Aligned_cols=488  Identities=20%  Similarity=0.268  Sum_probs=371.9

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+|+.++++++|++ |   .+.|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        79 y~el~~~v~~lA~~-L---~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~  154 (660)
T PLN02430         79 YKEVYEEVLQIGSA-L---RASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFV  154 (660)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHH-HHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756           81 DQEFFS-LAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~  159 (526)
                      +++... .+.......+       ..+.++.++..................+|++++..+........+..++|+++|+|
T Consensus       155 ~~~~~~~~~~~~~~~~~-------~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiy  227 (660)
T PLN02430        155 QDKKIKELLEPDCKSAK-------RLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMY  227 (660)
T ss_pred             CHHHHHHHHhhhcccCC-------CceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEE
Confidence            875432 2211111111       35667777542211000000011123577887765533222222346789999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhhHhH-----hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHH
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNGALI-----WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYT  234 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  234 (526)
                      ||||||.||||++||+++...+......     ..++.++++++++|++|.++.......+..|+++.+.. .++..+++
T Consensus       228 TSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~  306 (660)
T PLN02430        228 TSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYH-GDLNALRD  306 (660)
T ss_pred             CCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeC-CChhhHHH
Confidence            9999999999999999998876654322     14678999999999999999877666666777766554 37788999


Q ss_pred             HHHhcCceeeeccHHHHHHHHccCC-------------------------------C--CCC-C----------CCCcee
Q 009756          235 AIATHGVTHFCAAPVVLNAIANASP-------------------------------E--DTI-L----------PLTNVV  270 (526)
Q Consensus       235 ~i~~~~~t~l~~~P~~~~~l~~~~~-------------------------------~--~~~-~----------~l~~lr  270 (526)
                      .+++++||++.++|.+++.+.....                               .  ... +          -.+++|
T Consensus       307 ~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr  386 (660)
T PLN02430        307 DLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLR  386 (660)
T ss_pred             HHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEE
Confidence            9999999999999999988765210                               0  000 0          015899


Q ss_pred             eEeccCCCCCHHHHHHHhhcC-CeeecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecC-CC
Q 009756          271 NVNTAGAPPPPSLLFAMSQKG-FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDA-RT  348 (526)
Q Consensus       271 ~~~~~Ge~l~~~~~~~~~~~~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~-~~  348 (526)
                      .+++||+++++++.+.++.++ +.+++.||+||+++.++.....          .....+++|.|.+++ +++++|. +.
T Consensus       387 ~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~----------~~~~~gsvG~p~~~~-evki~d~~~~  455 (660)
T PLN02430        387 LLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPD----------EMCMLGTVGAPAVYN-ELRLEEVPEM  455 (660)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccc----------cCCCCCCccCCCCce-EEEEEEcCCc
Confidence            999999999999987777665 6899999999998765543211          011237899999999 6999873 32


Q ss_pred             C-CccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCCceEEEeccccceee-eCCeeechHHHH
Q 009756          349 N-QPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVEVE  426 (526)
Q Consensus       349 g-~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~-~~G~~v~~~~ie  426 (526)
                      | .+.+.+  ..|||+++|++++.||+++++.+...|.+|||+|||+|++++||++++.||.+|+|| .+|++|+|.+||
T Consensus       456 g~~~~~~~--~~GEi~vrg~~v~~GY~~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE  533 (660)
T PLN02430        456 GYDPLGEP--PRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLE  533 (660)
T ss_pred             CcccCCCC--CcceEEecCCCccccccCChHHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHH
Confidence            3 333333  579999999999999999999999999999999999999999999999999999999 579999999999


Q ss_pred             HHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCch------------h---hhhhhH----HHHHHHH-HhcCCCcc
Q 009756          427 KVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE------------L---DKGKLA----EDVSKFC-RAKMPSYW  486 (526)
Q Consensus       427 ~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~------------~---~~~~~~----~~l~~~l-~~~l~~~~  486 (526)
                      .++.++|.|.+++|++..   .++.++|+|+++++.-.            +   ...+..    +++.+.. +++|+.|.
T Consensus       534 ~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e  610 (660)
T PLN02430        534 NVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFE  610 (660)
T ss_pred             HHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCce
Confidence            999999999999999853   24578899987643200            0   001112    2333332 23699999


Q ss_pred             CCcEEEecc--c-----cCCCCccccHHHHHHHHHhc
Q 009756          487 VPKSVVFAA--L-----PKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       487 ~p~~~~~~~--l-----P~t~~GKv~r~~l~~~~~~~  516 (526)
                      +++.+.+.+  +     .+|+++|+.|+.+.+.|.+.
T Consensus       611 ~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~  647 (660)
T PLN02430        611 YIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVE  647 (660)
T ss_pred             eeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHH
Confidence            999988765  3     27999999999999988764

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-61  Score=502.01  Aligned_cols=490  Identities=23%  Similarity=0.254  Sum_probs=389.6

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.+++.++|+. |   .+.|+++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.++++++|+
T Consensus        38 y~~L~~~~~~~a~~-L---~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~  113 (540)
T PRK06164         38 RAELRALVDRLAAW-L---AAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVV  113 (540)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHH-HHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCC---CcCCCCCCCCCCeEE
Q 009756           81 DQEFFS-LAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP---EFAWKPPEDEWQSIA  156 (526)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~a~  156 (526)
                      +++... .+.+.+......  .....+.++.++.......      ......+.........   .........++++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (540)
T PRK06164        114 WPGFKGIDFAAILAAVPPD--ALPPLRAIAVVDDAADATP------APAPGARVQLFALPDPAPPAAAGERAADPDAGAL  185 (540)
T ss_pred             ccccccccHHHHhhccccc--ccCCcceEEEeccCcccCC------CCCcccccccccccccCCcccccccCCCCCceEE
Confidence            876421 111111111100  0002345555542111000      0000001111111000   000011234678999


Q ss_pred             EEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHH
Q 009756          157 LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAI  236 (526)
Q Consensus       157 i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i  236 (526)
                      ++|||||||.||+|+++|+++..........+++..++++++.+|++|.+++...+.++..|+++++.+.+++..+++.+
T Consensus       186 i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l  265 (540)
T PRK06164        186 LFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARAL  265 (540)
T ss_pred             EEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHH
Confidence            99999999999999999999999988888888999999999999999999998878888888888888888999999999


Q ss_pred             HhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccC-CCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCC
Q 009756          237 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAG-APPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       237 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~G-e~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      +++++|+++++|+++..|.+.. ..... +++++.+..+| .+...++.+++...++++++.||+||++++++.......
T Consensus       266 ~~~~~t~~~~~p~~l~~l~~~~-~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  343 (540)
T PRK06164        266 RRHRVTHTFGNDEMLRRILDTA-GERAD-FPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALVALQPATDP  343 (540)
T ss_pred             HHhCCeeecCCHHHHHHHHHhh-cccCC-CcceeeeeeccCCcchHHHHHHHhhcCCceecceeeccccceeeccCCCCC
Confidence            9999999999999999998872 22233 78888876665 556667777777668999999999999876554322111


Q ss_pred             CCCCCcccccccccccceee-eecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeecCc
Q 009756          316 WDSLPFETQARLNARQGVRT-ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGD  393 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~-~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD  393 (526)
                              ......+.|.+. +++ .++|+|++++.+++.|  +.|||+++|++++.||++++..+...|. +|||+|||
T Consensus       344 --------~~~~~~~~g~~~~~~~-~~~i~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD  412 (540)
T PRK06164        344 --------VSVRIEGGGRPASPEA-RVRARDPQDGALLPDG--ESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGD  412 (540)
T ss_pred             --------CcceeccCccccCCCe-EEEEecCCCCcCCCCC--CeeEEEEecccccccccCCchhhhhcccCCCceecCC
Confidence                    011124556665 667 5999998889999887  8999999999999999999999998885 78999999


Q ss_pred             eeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHH
Q 009756          394 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAED  473 (526)
Q Consensus       394 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  473 (526)
                      +|+++++|.+++.||.+|+|+.+|.+++|.+||..+.++++|.+++|++.+. ..++.++++++..++...     ..++
T Consensus       413 l~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~-~~~~~~~~~vv~~~~~~~-----~~~~  486 (540)
T PRK06164        413 LGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR-DGKTVPVAFVIPTDGASP-----DEAG  486 (540)
T ss_pred             eEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC-CCceeEEEEEEeCCCCCC-----CHHH
Confidence            9999999999999999999999999999999999999999999999999884 346788899988766443     5688


Q ss_pred             HHHHHHhcCCCccCCcEEEecc-ccCCCCc---cccHHHHHHHHHhcCCccc
Q 009756          474 VSKFCRAKMPSYWVPKSVVFAA-LPKSATG---KIQKHLLRAKAKEMGPVKM  521 (526)
Q Consensus       474 l~~~l~~~l~~~~~p~~~~~~~-lP~t~~G---Kv~r~~l~~~~~~~~~~~~  521 (526)
                      +.++++++++.+++|+.+.+++ +|+|++|   |++|+.|++++.+....+.
T Consensus       487 l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~~~~~  538 (540)
T PRK06164        487 LMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARLAAER  538 (540)
T ss_pred             HHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhhhhhc
Confidence            9999999999999999999888 9999999   9999999999887665544

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.2e-62  Score=510.31  Aligned_cols=474  Identities=22%  Similarity=0.268  Sum_probs=370.4

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeec-cCccC--hHHHHHHHhhcCceE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSI-NIRLN--ATVVAFILSHASSAV   77 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~   77 (526)
                      |+||.++++++|++ |   .+. +++||+|+++++|++++++++|||+++|++++|+ ++.++  .+++.++++.+++++
T Consensus        71 y~el~~~~~~lA~~-L---~~~-~~~gd~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~  145 (612)
T PRK12476         71 WTQLGVRLRAVGAR-L---QQV-AGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTV  145 (612)
T ss_pred             HHHHHHHHHHHHHH-H---HHh-cCCCCEEEEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCE
Confidence            78999999999999 8   776 9999999999999999999999999999999999 57766  789999999999999


Q ss_pred             EEEccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEE
Q 009756           78 VIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIAL  157 (526)
Q Consensus        78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i  157 (526)
                      +|++++....+.+........     ....++.++....                     ...... ......++++++|
T Consensus       146 li~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~---------------------~~~~~~-~~~~~~~~d~a~i  198 (612)
T PRK12476        146 VLTTTAAAEAVEGFLRNLPRL-----RRPRVIAIDAIPD---------------------SAGESF-VPVELDTDDVSHL  198 (612)
T ss_pred             EEEcHHHHHHHHHHHhhcccc-----cCceEEEeccccc---------------------cccccc-cCCCCCCCceEEE
Confidence            999987766555443332200     1234554432110                     000000 0112456899999


Q ss_pred             EecCCCCCCccceeecchhHHHHHHhhHhHhC-CcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc--c--CHHHH
Q 009756          158 GYTSGTTASPKGVVVSHRGAYLMSLNGALIWG-MNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ--V--TAKAV  232 (526)
Q Consensus       158 ~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--~--~~~~~  232 (526)
                      +|||||||.||||.++|+++.+.+......++ +.+++++++.+|++|..++...+..++.|++.+++..  +  ++..+
T Consensus       199 ~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~  278 (612)
T PRK12476        199 QYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRW  278 (612)
T ss_pred             EeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHH
Confidence            99999999999999999999887776666677 7889999999999999999877777788888777743  2  78899


Q ss_pred             HHHHH--hcCceeeeccHHHHHHHHccCC----CCCCCCCCceeeEeccCCCCCHHHHHHHhh-c---CC---eeecccc
Q 009756          233 YTAIA--THGVTHFCAAPVVLNAIANASP----EDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K---GF---RITHTYG  299 (526)
Q Consensus       233 ~~~i~--~~~~t~l~~~P~~~~~l~~~~~----~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~---~~---~i~~~YG  299 (526)
                      ++.++  +++++.++++|+++..+.....    ..... ++++| +++||+++++++.+.+.+ +   |+   ++++.||
T Consensus       279 ~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~-l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG  356 (612)
T PRK12476        279 IKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDID-LSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYG  356 (612)
T ss_pred             HHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcc-hhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccc
Confidence            99994  5899999999998887776421    12233 78999 999999999999999874 2   43   4899999


Q ss_pred             cccCCCCccccccCCCC-----C--CC---------CcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEE
Q 009756          300 LTELTGPASVCAWKPEW-----D--SL---------PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIV  363 (526)
Q Consensus       300 ~tE~~~~~~~~~~~~~~-----~--~~---------~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~  363 (526)
                      +||++..++........     +  ..         +.........++|.|++++ +++|+|+++|++++.|  +.|||+
T Consensus       357 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~-~v~ivd~~~g~~~~~g--~~GEl~  433 (612)
T PRK12476        357 IAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQ-WAVIVDPDTGAELPDG--EVGEIW  433 (612)
T ss_pred             hhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCC-EEEEEeCCCCcCCCCC--CEEEEE
Confidence            99987554332111000     0  00         0000011225789999999 6999998879999988  899999


Q ss_pred             EcCccccccccCChhhhhhhhc-------------------CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHH
Q 009756          364 MRGSCVMKGYLKNPKANEEAFA-------------------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVE  424 (526)
Q Consensus       364 v~~~~~~~gy~~~~~~~~~~~~-------------------~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~  424 (526)
                      ++|++++.||+++++.+...|.                   ++||+|||+|+++ ||+++++||.+|+||++|++|+|.+
T Consensus       434 v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~e  512 (612)
T PRK12476        434 LHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQD  512 (612)
T ss_pred             EcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEECCcccCHHH
Confidence            9999999999999999988884                   2499999999985 9999999999999999999999999


Q ss_pred             HHHHHHc-CCCeee--eEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHhcCC-CccC-CcEEEecc---c
Q 009756          425 VEKVLYL-HPLVLE--AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP-SYWV-PKSVVFAA---L  496 (526)
Q Consensus       425 ie~~l~~-~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~-p~~~~~~~---l  496 (526)
                      ||.+|.+ +|.|.+  ++|++.+++. ++.++++++..++....    ..++|.+++++.+. .+++ |..+.+++   |
T Consensus       513 IE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~----~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~l  587 (612)
T PRK12476        513 IEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRA----DPAPAIDAIRAAVSRRHGLAVADVRLVPAGAI  587 (612)
T ss_pred             HHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcccc----cHHHHHHHHHHHHHHhhCCcceEEEEECCCCc
Confidence            9999985 799999  7778888777 78899999987654321    33556666666665 4666 57777664   9


Q ss_pred             cCCCCccccHHHHHHHHHhcC
Q 009756          497 PKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       497 P~t~~GKv~r~~l~~~~~~~~  517 (526)
                      |+|++||++|++|++++.+..
T Consensus       588 P~t~~GKi~r~~L~~~~~~~~  608 (612)
T PRK12476        588 PRTTSGKLARRACRAQYLDGR  608 (612)
T ss_pred             CcCCchHHHHHHHHHHHHcCC
Confidence            999999999999999987654

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=2.9e-61  Score=497.05  Aligned_cols=470  Identities=24%  Similarity=0.346  Sum_probs=387.3

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+++|++|+++++|++++++++|||+++|++++++.+..+..++..+++.++++++++
T Consensus        51 y~el~~~~~~la~~-L---~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~  126 (536)
T PRK10946         51 YRELNQASDNLACS-L---RRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIA  126 (536)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEE
Confidence            78999999999999 9   8999999999999999999999999999999998887777777888999999999999999


Q ss_pred             ccchH-----HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeE
Q 009756           81 DQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI  155 (526)
Q Consensus        81 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a  155 (526)
                      +++..     .....+....+       ....++..+..             +...+.+.+........ .....+++++
T Consensus       127 ~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~~~a  185 (536)
T PRK10946        127 DRQHALFSDDDFLNTLVAEHS-------SLRVVLLLNDD-------------GEHSLDDAINHPAEDFT-ATPSPADEVA  185 (536)
T ss_pred             eccccccchHHHHHHHHhhCC-------CceEEEEecCC-------------CCccHHHHhhCcccccc-cCCCCCCCeE
Confidence            86532     11122212122       22333332221             12344555543322211 2235678999


Q ss_pred             EEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH--HHHHHhhcceeeeecccCHHHHH
Q 009756          156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY--TWSLAALCGTSICLRQVTAKAVY  233 (526)
Q Consensus       156 ~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~  233 (526)
                      +++|||||||.||+|++||.++...+......+++..++++++.+|++|.+++..  .+.++..|++++.....++..++
T Consensus       186 ~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~  265 (536)
T PRK10946        186 FFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCF  265 (536)
T ss_pred             EEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHHH
Confidence            9999999999999999999999999888888889999999999999999888753  56667778887777778999999


Q ss_pred             HHHHhcCceeeeccHHHHHHHHccCC--CCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcccc
Q 009756          234 TAIATHGVTHFCAAPVVLNAIANASP--EDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVC  310 (526)
Q Consensus       234 ~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~  310 (526)
                      +.++++++|++.++|..+..|++...  ..... ++++|.+++||+++++++.+.+. .+++++++.||+||+....+..
T Consensus       266 ~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~-~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~  344 (536)
T PRK10946        266 PLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQ-LASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRL  344 (536)
T ss_pred             HHHHHhCCcEEEeChHHHHHHHhhhcccCcccc-ccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecC
Confidence            99999999999999999999987632  22233 78999999999999999999987 5699999999999965332211


Q ss_pred             ccCCCCCCCCcccccccccccceee-eecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCe
Q 009756          311 AWKPEWDSLPFETQARLNARQGVRT-ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGW  388 (526)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~  388 (526)
                       ..+         ......++|.|+ +++ .++|+|++ +++++.|  +.|||+++|+.++.||+++++.+...|. ++|
T Consensus       345 -~~~---------~~~~~~~~G~p~~~~~-~v~i~d~~-~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~  410 (536)
T PRK10946        345 -DDS---------DERIFTTQGRPMSPDD-EVWVADAD-GNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGF  410 (536)
T ss_pred             -CCc---------cccccccCCcccCCCc-eEEEECCC-CCCCCCC--CccEEEEecCccchhhcCCcccchhhcccCCc
Confidence             110         112236789998 666 69999976 8899988  8999999999999999999999988885 899


Q ss_pred             eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756          389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG  468 (526)
Q Consensus       389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  468 (526)
                      |+|||+++++++|.+++.||.+|+++++|.+++|.+||..|.++++|.+++|++.++...|+.++++++..++.      
T Consensus       411 ~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~------  484 (536)
T PRK10946        411 YCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPL------  484 (536)
T ss_pred             eecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCC------
Confidence            99999999999999999999999999999999999999999999999999999999998889999999877652      


Q ss_pred             hhHHHHHHHHHhc-CCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          469 KLAEDVSKFCRAK-MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       469 ~~~~~l~~~l~~~-l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                       ...++.+++++. ++.|++|..+.+++ +|+|++||++|++|++++.+..
T Consensus       485 -~~~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~~  534 (536)
T PRK10946        485 -KAVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA  534 (536)
T ss_pred             -CHHHHHHHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhhc
Confidence             346888999875 99999999999888 9999999999999999987654

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=6.3e-62  Score=517.04  Aligned_cols=462  Identities=18%  Similarity=0.246  Sum_probs=366.7

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus       234 y~el~~~~~~lA~~-L---~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~  308 (718)
T PRK08043        234 YRKLLKKTLFVGRI-L---EKY-SVEGERIGLMLPNATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFT  308 (718)
T ss_pred             HHHHHHHHHHHHHH-H---HHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEE
Confidence            78999999999999 8   776 599999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHH--HHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHH----HhhCCCCcCCCCCCCCCCe
Q 009756           81 DQEFFSLAE--EALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF----LETGDPEFAWKPPEDEWQS  154 (526)
Q Consensus        81 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~  154 (526)
                      +++......  .......        ...++.+++...            ...+...    .....+. .......++|+
T Consensus       309 ~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~  367 (718)
T PRK08043        309 SRQFLDKGKLWHLPEQLT--------QVRWVYLEDLKD------------DVTTADKLWIFAHLLMPR-LAQVKQQPEDA  367 (718)
T ss_pred             cHHHHhhccCCChhhhhc--------cccEEEhhhhhh------------hcchhHHHHHHHHHhCCc-cccCCCCCCCe
Confidence            876543211  0111111        112233322100            0011110    0000000 01112467899


Q ss_pred             EEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecc-cCHHHH
Q 009756          155 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQ-VTAKAV  232 (526)
Q Consensus       155 a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~~~  232 (526)
                      ++++|||||||.||+|++||.++.+.+......++++++|++++.+|++|.+++.. .+.++..|+++++.+. .+...+
T Consensus       368 a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~  447 (718)
T PRK08043        368 ALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIV  447 (718)
T ss_pred             EEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHH
Confidence            99999999999999999999999988887777788999999999999999999865 4556667777776653 566788


Q ss_pred             HHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccc
Q 009756          233 YTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCA  311 (526)
Q Consensus       233 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~  311 (526)
                      ++.++++++|+++++|+.+..+.+..  ...+ ++++|.+++||+++++++.+.+. .+|+++++.||+||+++.++...
T Consensus       448 ~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~-~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~  524 (718)
T PRK08043        448 PELVYDRNCTVLFGTSTFLGNYARFA--NPYD-FARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINV  524 (718)
T ss_pred             HHHHHhcCCeEEEchHHHHHHhhhhc--Cccc-ccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecC
Confidence            89999999999999999998887642  2233 78999999999999999999988 56999999999999976554321


Q ss_pred             cCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCC--hhh-------hhh
Q 009756          312 WKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN--PKA-------NEE  382 (526)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~--~~~-------~~~  382 (526)
                      .           .....+++|.|+|++ +++++|.+ +.    +  +.|||+++|++++.||+++  ++.       +..
T Consensus       525 ~-----------~~~~~~svG~p~pg~-~~~i~d~~-~~----~--~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~  585 (718)
T PRK08043        525 P-----------MAAKPGTVGRILPGM-DARLLSVP-GI----E--QGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENAR  585 (718)
T ss_pred             C-----------cccCCCCCCCcCCCC-eeEEecCC-CC----C--CceEEEEecCCccccccCCCCccccccccccccc
Confidence            1           011247899999999 59999865 32    2  4699999999999999983  331       111


Q ss_pred             -hhcCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCC
Q 009756          383 -AFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPE  461 (526)
Q Consensus       383 -~~~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  461 (526)
                       .+.+|||+|||+|++++||++++.||.+|+|+++|++|+|.+||.++.+++.+.+++|++.+++..++.+++++..   
T Consensus       586 ~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~---  662 (718)
T PRK08043        586 GEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTD---  662 (718)
T ss_pred             ccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcC---
Confidence             2347999999999999999999999999999999999999999999999998889899999888888888877641   


Q ss_pred             CchhhhhhhHHHHHHHHHhc-CCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          462 ADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       462 ~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      ...     ..++++++++++ |+.|++|+.+.+++ ||+|++||++|++|++++.+.+.
T Consensus       663 ~~~-----~~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~  716 (718)
T PRK08043        663 SEL-----TREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDEPEQ  716 (718)
T ss_pred             ccc-----CHHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhcccc
Confidence            111     346789999887 99999999999988 99999999999999999877554

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=3e-62  Score=556.28  Aligned_cols=488  Identities=21%  Similarity=0.231  Sum_probs=380.5

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++.++++++|+
T Consensus       273 Y~eL~~~~~~lA~~-L---~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~  348 (1389)
T TIGR03443       273 YKQINEASNILAHY-L---LKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIV  348 (1389)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccchH---HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCccc--HHHHHhhCC--CCcCCCCCCCCCC
Q 009756           81 DQEFF---SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIE--YEKFLETGD--PEFAWKPPEDEWQ  153 (526)
Q Consensus        81 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~~~~~~~~~~~  153 (526)
                      +.+..   ..+..........   ....+.+ .+......        ..+...  ..+.+....  ..........+++
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  416 (1389)
T TIGR03443       349 IEKAGTLDQLVRDYIDKELEL---RTEIPAL-ALQDDGSL--------VGGSLEGGETDVLAPYQALKDTPTGVVVGPDS  416 (1389)
T ss_pred             eccccccchhhhhhhhccccc---ccccceE-Eecccccc--------cccccccccccccccccccccCCCCCcCCCCC
Confidence            76421   1111111100000   0011111 12111000        000000  001111000  0001111245789


Q ss_pred             eEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc---cCHH
Q 009756          154 SIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAK  230 (526)
Q Consensus       154 ~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~  230 (526)
                      +++|+|||||||.||||+++|+++.+.+.+....+++.++++++...|++|..++...+.++..|+++++.+.   .++.
T Consensus       417 ~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~  496 (1389)
T TIGR03443       417 NPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPG  496 (1389)
T ss_pred             ceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCHH
Confidence            9999999999999999999999999998888888899999999999999999988888888899998877643   3678


Q ss_pred             HHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhc--CCeeecccccccCCCCcc
Q 009756          231 AVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPAS  308 (526)
Q Consensus       231 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~  308 (526)
                      .+++.++++++|+++++|++++.|.....   .. ++++|.+++|||++++...+++.+.  ++++++.||+||++..++
T Consensus       497 ~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~~-~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~  572 (1389)
T TIGR03443       497 RLAEWMAKYGATVTHLTPAMGQLLSAQAT---TP-IPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVS  572 (1389)
T ss_pred             HHHHHHHHhCCeEEEeCHHHHHHHHhccc---cc-CCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEE
Confidence            99999999999999999999999875432   22 7899999999999999999988754  789999999999987665


Q ss_pred             ccccCCCCCCCCcccccccccccceeeeecCCceeecCCC-CCccCCCCCceEEEEEcCccccccccCChhhhhhhhc--
Q 009756          309 VCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDART-NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA--  385 (526)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~-g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--  385 (526)
                      .....................++|.|++++ +++|+|++. +++++.|  +.|||+|+|++++.||+++++.+.+.|.  
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~~~G--~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~  649 (1389)
T TIGR03443       573 YFEIPSRSSDSTFLKNLKDVMPAGKGMKNV-QLLVVNRNDRTQTCGVG--EVGEIYVRAGGLAEGYLGLPELNAEKFVNN  649 (1389)
T ss_pred             EEEccccccccchhhcccCcCcCCCccCCC-EEEEECCccCCCcCCCC--CceEEEecccccchhcCCChhHhhhhccCC
Confidence            433211100000000011235789999999 699999753 5678887  8999999999999999999999998873  


Q ss_pred             ---------------------------CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeee
Q 009756          386 ---------------------------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEA  438 (526)
Q Consensus       386 ---------------------------~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~  438 (526)
                                                 ++||+|||+|++++||.++++||.||+||++|++|+|.+||.+|.++|.|.++
T Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a  729 (1389)
T TIGR03443       650 WFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVREN  729 (1389)
T ss_pred             cccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchhee
Confidence                                       47999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCCceeEEEEEecCCCchh-----------h----------hhhhHHHHHHHHHhcCCCccCCcEEEecc-c
Q 009756          439 AVVARPDERWGESPCAFVTLKPEADEL-----------D----------KGKLAEDVSKFCRAKMPSYWVPKSVVFAA-L  496 (526)
Q Consensus       439 ~v~~~~~~~~~~~~~~~v~~~~~~~~~-----------~----------~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-l  496 (526)
                      +|+..++...++.+++++++..+....           +          .....++++++++++||.|++|..+++++ |
T Consensus       730 ~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~l  809 (1389)
T TIGR03443       730 VTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKL  809 (1389)
T ss_pred             EEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccC
Confidence            999888877788899999876321100           0          01135789999999999999999999888 9


Q ss_pred             cCCCCccccHHHHHH
Q 009756          497 PKSATGKIQKHLLRA  511 (526)
Q Consensus       497 P~t~~GKv~r~~l~~  511 (526)
                      |+|++||++|++|++
T Consensus       810 P~t~~GKidr~~L~~  824 (1389)
T TIGR03443       810 PLNPNGKVDKPALPF  824 (1389)
T ss_pred             CCCCCccccHhhcCC
Confidence            999999999999964

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.6e-61  Score=499.25  Aligned_cols=479  Identities=25%  Similarity=0.344  Sum_probs=380.6

Q ss_pred             CccchhhhhhcccccccCccC-CCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLL-FPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~-~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |.||.++++++|++ |   .+ .|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.+++++++
T Consensus        52 y~~l~~~~~~~a~~-L---~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i  127 (562)
T PRK12492         52 YAELERHSAAFAAY-L---QQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALV  127 (562)
T ss_pred             HHHHHHHHHHHHHH-H---HHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEE
Confidence            78999999999999 8   87 4999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCC------------c--hh-hhhhhhcCcccHHHHHhhCCCCcC
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCD------------S--KQ-LEYALARGAIEYEKFLETGDPEFA  144 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~--~~-~~~~~~~~~~~~~~~l~~~~~~~~  144 (526)
                      +++.....+.......        ....++........            .  .. .+.........|++++........
T Consensus       128 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (562)
T PRK12492        128 YLNMFGKLVQEVLPDT--------GIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSL  199 (562)
T ss_pred             eccccchHHHHhhhcc--------CceEEEeechhhccccccchhcccccccccccccccCCcccccHHHHHhccCCCCC
Confidence            9876554443332211        11111111000000            0  00 000001123455555543322211


Q ss_pred             CCCCCCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhC---------CcCC-cEEEEecccccchhhHHHHHH
Q 009756          145 WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG---------MNEG-AVFLWTLPMFHGNGWSYTWSL  214 (526)
Q Consensus       145 ~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~---------~~~~-~~~~~~~p~~~~~~~~~~~~~  214 (526)
                      .......+++++|+|||||||.||+|+++|+++..+.......+.         +..+ ++++..+|++|.+++...+..
T Consensus       200 ~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~  279 (562)
T PRK12492        200 KPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMC  279 (562)
T ss_pred             CCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHH
Confidence            112346678999999999999999999999998777665544432         2233 467888999999998654444


Q ss_pred             H-hhcceeeee-cccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcC
Q 009756          215 A-ALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKG  291 (526)
Q Consensus       215 ~-~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~  291 (526)
                      . ..|+..+.. ...++..+++.++++++|++.++|+++..|.......... ++++|.+++||+++++++.+.+. .++
T Consensus       280 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~~~~~~~~~~~~~~~  358 (562)
T PRK12492        280 MMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLD-FSALKLTNSGGTALVKATAERWEQLTG  358 (562)
T ss_pred             HhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCccccc-ccceeEEEeccccCCHHHHHHHHHHhC
Confidence            4 455545444 3468899999999999999999999999998876555555 78999999999999999999988 459


Q ss_pred             CeeecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccc
Q 009756          292 FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK  371 (526)
Q Consensus       292 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~  371 (526)
                      +++++.||+||++++++.+....          ....+++|.|++++ .++|+|++ +.+++.|  +.|||+++|+.++.
T Consensus       359 ~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~p~~~~-~v~ivd~~-~~~~~~g--~~Gel~v~g~~~~~  424 (562)
T PRK12492        359 CTIVEGYGLTETSPVASTNPYGE----------LARLGTVGIPVPGT-ALKVIDDD-GNELPLG--ERGELCIKGPQVMK  424 (562)
T ss_pred             CceeeccCccccCceeeecCCcc----------cccCCccceecCCC-EEEEECCC-CCCCCCC--CceEEEEeCCcccc
Confidence            99999999999987665432111          11236789999999 69999986 8888887  79999999999999


Q ss_pred             cccCChhhhhhhhc-CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCc
Q 009756          372 GYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE  450 (526)
Q Consensus       372 gy~~~~~~~~~~~~-~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~  450 (526)
                      ||+++++.+...|. +|||+|||+|+++++|.+++.||.+|+|+.+|.+++|.+||..+.+++.|.+++|++.++...++
T Consensus       425 gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~  504 (562)
T PRK12492        425 GYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGE  504 (562)
T ss_pred             ccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCc
Confidence            99999999988884 78999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             eeEEEEEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHH
Q 009756          451 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK  512 (526)
Q Consensus       451 ~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~  512 (526)
                      .+.++++..+...      ..++++++++++++.+++|..+.+++ ||+|++||++|++|+++
T Consensus       505 ~~~~~v~~~~~~~------~~~~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~  561 (562)
T PRK12492        505 AVKLFVVARDPGL------SVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDI  561 (562)
T ss_pred             eEEEEEEeCCCCC------CHHHHHHHHHHhcccccCCcEEEEeccCCCCCCCceeHHHHHhh
Confidence            8999888654321      45789999999999999999999888 99999999999999875

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.4e-61  Score=501.28  Aligned_cols=488  Identities=26%  Similarity=0.377  Sum_probs=388.4

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||++++.++|++ |   .+.|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++++
T Consensus        52 y~eL~~~~~~la~~-L---~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~  127 (563)
T PRK06710         52 FSVFHDKVKRFANY-L---QKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILC  127 (563)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCC--chh-----hhh---------hhhcCcccHHHHHhhCCCCcC
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCD--SKQ-----LEY---------ALARGAIEYEKFLETGDPEFA  144 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~-----~~~---------~~~~~~~~~~~~l~~~~~~~~  144 (526)
                      ++.....+.......        ....++........  ...     ...         ........++.+........ 
T Consensus       128 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  198 (563)
T PRK06710        128 LDLVFPRVTNVQSAT--------KIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGV-  198 (563)
T ss_pred             eccchhhhhccchhh--------ccceeEEeccccccccccccccchhhcccccccccccccchhhhhhhhhhcccccc-
Confidence            886655443322211        12222221110000  000     000         00000011222211111110 


Q ss_pred             CCCCCCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhH-hCCcC-CcEEEEecccccchhhHHH-HHHHhhccee
Q 009756          145 WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI-WGMNE-GAVFLWTLPMFHGNGWSYT-WSLAALCGTS  221 (526)
Q Consensus       145 ~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~-~~~~~-~~~~~~~~p~~~~~~~~~~-~~~~~~g~~~  221 (526)
                      .......+++++++|||||||.||+|.++|.++..+....... +.... .+++++..|++|.+++... ...+..|+++
T Consensus       199 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~  278 (563)
T PRK06710        199 EVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKM  278 (563)
T ss_pred             ccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeE
Confidence            0111245789999999999999999999999987654433332 33333 4578889999999887544 4456678877


Q ss_pred             eeecccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeeccccc
Q 009756          222 ICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGL  300 (526)
Q Consensus       222 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~  300 (526)
                      ++.+.+++..+++.++++++|++.++|+.+..+.+........ ++++|.+++||+++++++.+++. .++.++++.||+
T Consensus       279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~  357 (563)
T PRK06710        279 VLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYD-ISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGL  357 (563)
T ss_pred             EEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCC-hhhhhheeeCCCcCCHHHHHHHHHhhCCCEeccccc
Confidence            7777789999999999999999999999999998876544444 78999999999999999999988 458999999999


Q ss_pred             ccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhh
Q 009756          301 TELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN  380 (526)
Q Consensus       301 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~  380 (526)
                      ||++.++......          .....+++|.+.++. .++++|++++.+++.|  +.|||+++|+.++.||+++++.+
T Consensus       358 tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~~~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~  424 (563)
T PRK06710        358 TESSPVTHSNFLW----------EKRVPGSIGVPWPDT-EAMIMSLETGEALPPG--EIGEIVVKGPQIMKGYWNKPEET  424 (563)
T ss_pred             ccCccccccCccc----------ccccCCccCCCCCCC-eEEEEECCCCccCCCC--CceEEEEecCccchhhhCChHHH
Confidence            9998755432110          111235789999998 5999998779999988  78999999999999999999999


Q ss_pred             hhhhcCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecC
Q 009756          381 EEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKP  460 (526)
Q Consensus       381 ~~~~~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  460 (526)
                      ...|.+|||+|||+++++++|.++++||.||+|+.+|.+|+|.+||.++.+++.|.+++|++.++...++.++++++..+
T Consensus       425 ~~~~~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~  504 (563)
T PRK06710        425 AAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKE  504 (563)
T ss_pred             hhhcccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECC
Confidence            99899999999999999999999999999999999999999999999999999999999999999888899999999877


Q ss_pred             CCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCCcc
Q 009756          461 EADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPVK  520 (526)
Q Consensus       461 ~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~~  520 (526)
                      +...     ..+++.++++++++.+++|..+.+++ ||+|++||++|+.|++++..+.+.+
T Consensus       505 ~~~~-----~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~~~~~~  560 (563)
T PRK06710        505 GTEC-----SEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKRKNEDE  560 (563)
T ss_pred             CCCC-----CHHHHHHHHHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHhhcCccc
Confidence            6443     45789999999999999999999988 9999999999999999998776654

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=2.7e-62  Score=486.31  Aligned_cols=475  Identities=26%  Similarity=0.306  Sum_probs=361.1

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+|+.+++.++|++ |   +..|+..||+|+|++.|+++|+++.+|||.+|++.||+.+..+++++.++|++++++++|+
T Consensus        48 y~e~~~~v~~~a~g-L---~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~  123 (613)
T COG1022          48 YRELYERVRALASG-L---LSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFV  123 (613)
T ss_pred             HHHHHHHHHHHHHH-H---HhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEe
Confidence            78999999999999 9   9999977999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHH-HHHHHHHHhhhccCCCCCCCeEEEEcc---CCC--CchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCe
Q 009756           81 DQEFFS-LAEEALKMMEANSEGKLKTPHLIVIGD---ESC--DSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQS  154 (526)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  154 (526)
                      ++.... .+.......+       .+...+...+   ...  .....+.....+...+ .+.  .........+..++|+
T Consensus       124 e~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~dDl  193 (613)
T COG1022         124 ENQELLDLVLPVLEDCP-------KVVDLIVIIDLVREAVEAKALVLEVFPDEGISLF-LID--SAGLEGRIAPPKPDDL  193 (613)
T ss_pred             cchHHHHHHHhhhcccc-------chhhhhhhhhhhhhccchhhccccccccccchhh-hhc--ccccccccCCCCccce
Confidence            985443 3333333211       0111110000   000  0000000001111111 111  1111111134689999


Q ss_pred             EEEEecCCCCCCccceeecchhHHHHHHhhHhHhC-CcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHH
Q 009756          155 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG-MNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVY  233 (526)
Q Consensus       155 a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  233 (526)
                      |.|+|||||||.||||++||+|+++++........ .+++|++++++|+.|.+...+.....+.++ .......++..++
T Consensus       194 atiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g-~~~~~~~~~~~~~  272 (613)
T COG1022         194 ATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGG-VTVLFKEDPRTLL  272 (613)
T ss_pred             EEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcc-eEEEecCCHHHHH
Confidence            99999999999999999999999999999999986 999999999999999999887544444444 4444456889999


Q ss_pred             HHHHhcCceeeeccHHHHHHHHccCC----CCC------------------------------------------C-CCC
Q 009756          234 TAIATHGVTHFCAAPVVLNAIANASP----EDT------------------------------------------I-LPL  266 (526)
Q Consensus       234 ~~i~~~~~t~l~~~P~~~~~l~~~~~----~~~------------------------------------------~-~~l  266 (526)
                      ..++.++||.++++|.+|+.+-+.-.    ...                                          . .--
T Consensus       273 ~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lG  352 (613)
T COG1022         273 EDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALG  352 (613)
T ss_pred             HHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhC
Confidence            99999999999999999988765310    000                                          0 002


Q ss_pred             CceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecC
Q 009756          267 TNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDA  346 (526)
Q Consensus       267 ~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~  346 (526)
                      .++|.+++||.++++++..+++..|+++.++||+||++++++.+...           ....+++|.|+|++ +++|+| 
T Consensus       353 gri~~~~sGGa~l~~~~~~f~~~lGi~i~eGYGlTEts~~~~v~~~~-----------~~~~gtvG~p~p~~-evKI~d-  419 (613)
T COG1022         353 GRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPPD-----------RFVLGTVGKPLPGI-EVKIAD-  419 (613)
T ss_pred             CcEEEEEecCCcCCHHHHHHHHHcCCCeEEEecccccccceEEcccc-----------CcccCCcCCcCCCc-eEEEcc-
Confidence            37899999999999999999999999999999999999988876432           23448999999999 699988 


Q ss_pred             CCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeecCceeEEcCCceEEEeccccceee-eCCeeechHH
Q 009756          347 RTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVE  424 (526)
Q Consensus       347 ~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~~~~~g~~~~~GR~~d~i~-~~G~~v~~~~  424 (526)
                                  .|||+|+||+++.|||++|+.|.+.|+ ||||+|||+|.++++|++++.||.+|.|+ .+|++|.|+.
T Consensus       420 ------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~  487 (613)
T COG1022         420 ------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEP  487 (613)
T ss_pred             ------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHH
Confidence                        399999999999999999999999998 99999999999999999999999999999 8999999999


Q ss_pred             HHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCch-----------hhh------hhhHHHHHHHHHh---cCCC
Q 009756          425 VEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE-----------LDK------GKLAEDVSKFCRA---KMPS  484 (526)
Q Consensus       425 ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~------~~~~~~l~~~l~~---~l~~  484 (526)
                      ||..+.++|.|.+.+|++..+..    +.|.|+++.+.-.           .+.      ....+.+...+.+   ....
T Consensus       488 IE~~l~~~~~I~qi~vvg~~k~~----~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~  563 (613)
T COG1022         488 IESKLAKSPLIEQICVVGDDKKF----LVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFG  563 (613)
T ss_pred             HHHHHhcCCCeeEEEEEecCCcc----eEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccc
Confidence            99999999999999999955544    8888888754211           000      0011112222211   2344


Q ss_pred             ccCCcEEEecc--cc-----CCCCccccHHHHHHHHHhcCCc
Q 009756          485 YWVPKSVVFAA--LP-----KSATGKIQKHLLRAKAKEMGPV  519 (526)
Q Consensus       485 ~~~p~~~~~~~--lP-----~t~~GKv~r~~l~~~~~~~~~~  519 (526)
                      +..+..+.+.+  +.     .|++-|+.|....+.+.+....
T Consensus       564 ~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~  605 (613)
T COG1022         564 FEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEA  605 (613)
T ss_pred             hhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHH
Confidence            45555555433  33     5899999999999888865543

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=7.1e-61  Score=491.95  Aligned_cols=471  Identities=25%  Similarity=0.324  Sum_probs=391.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.||.++++++|++ |   .+.|+++|++|+++++|+.+++++++||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        33 y~~l~~~~~~~a~~-L---~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~  108 (508)
T TIGR02262        33 YGELEAQVRRLGAA-L---RRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFV  108 (508)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEE
Confidence            67999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+.+.....+       ....++.++...           .....+.++.......... ....++++++++||
T Consensus       109 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~T  169 (508)
T TIGR02262       109 SGELLPVIKAALGKSP-------HLEHRVVVGRPE-----------AGEVQLAELLATESEQFKP-AATQADDPAFWLYS  169 (508)
T ss_pred             chhhHHHHHHHHhcCC-------CccEEEEeCCCC-----------cccccHHHHhhcCCCccCC-CCCCCCCcEEEEeC
Confidence            9887776665544443       345555554321           1223444444433222111 22456899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHh-hHhHhCCcCCcEEEEecccccchhhHHHHH-HHhhcceeeeec-ccCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLN-GALIWGMNEGAVFLWTLPMFHGNGWSYTWS-LAALCGTSICLR-QVTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~g~~~~~~~-~~~~~~~~~~i~  237 (526)
                      |||||.||+|.++|.++...+.. ....++++++++++...|++|..++...+. .+..|++.++.+ ..++..+++.|+
T Consensus       170 SGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~  249 (508)
T TIGR02262       170 SGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLR  249 (508)
T ss_pred             CCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence            99999999999999998877665 345568899999999999999988865444 455666666654 368899999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEW  316 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~  316 (526)
                      ++++|.+.++|.++..+.......... ..++|.++++|+++++++.+.|. .+++++++.||+||++.+++.+...   
T Consensus       250 ~~~~t~~~~~P~~~~~~~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~---  325 (508)
T TIGR02262       250 RHQPTIFYGVPTLYAAMLADPNLPAED-QVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPG---  325 (508)
T ss_pred             HHCCcEEecchHHHHHHhcCccccccc-cccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCcc---
Confidence            999999999999998887765433333 67899999999999999999998 5699999999999998765543211   


Q ss_pred             CCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeE
Q 009756          317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAV  396 (526)
Q Consensus       317 ~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~  396 (526)
                              ....+++|.|++++ .++++|+ ++.+++.+  +.|||+++|+.++.||+++++.+...|.++||+|||+++
T Consensus       326 --------~~~~~~~G~~~~g~-~v~i~d~-~~~~~~~g--~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~  393 (508)
T TIGR02262       326 --------DVRYGTSGKPVPGY-RLRLVGD-GGQDVAAG--EPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYV  393 (508)
T ss_pred             --------CCCCCCcCCCCCCc-EEEEECC-CCCCCCCC--CeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEE
Confidence                    01126789999998 5999995 48999988  799999999999999999999999999999999999999


Q ss_pred             EcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHH
Q 009756          397 KHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK  476 (526)
Q Consensus       397 ~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  476 (526)
                      ++++|.+++.||.+|+++.+|.+++|.+||..+.++++|.++++++.++...++.+.++++..++....  ....+++.+
T Consensus       394 ~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~i~~  471 (508)
T TIGR02262       394 RNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDID--TALETELKE  471 (508)
T ss_pred             EcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccc--cccHHHHHH
Confidence            999999999999999999999999999999999999999999999988877778888998887654321  125678999


Q ss_pred             HHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHH
Q 009756          477 FCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK  512 (526)
Q Consensus       477 ~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~  512 (526)
                      .++++|+.+++|..+.+++ +|+|++||++|+.|+++
T Consensus       472 ~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~  508 (508)
T TIGR02262       472 HVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLREG  508 (508)
T ss_pred             HHHHhcccCCCCceEEEecCCCCCCCCcEehhhccCC
Confidence            9999999999999998887 99999999999998753

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-60  Score=496.33  Aligned_cols=489  Identities=26%  Similarity=0.317  Sum_probs=388.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.||.+++.++|.+ |   .++|+++|++|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++++
T Consensus        61 y~~l~~~~~~la~~-L---~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~  136 (567)
T PRK06178         61 YAELDELSDRFAAL-L---RQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLA  136 (567)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEE
Confidence            78999999999999 9   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhh--hh--------hhhcCcccHHHHHhhCCCCcCCCCCCC
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQL--EY--------ALARGAIEYEKFLETGDPEFAWKPPED  150 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~  150 (526)
                      ++.....+.+.....        ....++............  ..        ....+..++.+......... ......
T Consensus       137 ~~~~~~~l~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  207 (567)
T PRK06178        137 LDQLAPVVEQVRAET--------SLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTAPV-PLPPPA  207 (567)
T ss_pred             ccchHHHHHHhhccC--------CcceEEEeccccccccccccccccccccccccccccccHHHHhhcccccc-ccCCCC
Confidence            998777666554322        133344332211100000  00        00011122222211111111 112245


Q ss_pred             CCCeEEEEecCCCCCCccceeecchhHHHHHHhhHh-HhCCcCCcEEEEecccccchhhH-HHHHHHhhcceeeeecccC
Q 009756          151 EWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL-IWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSICLRQVT  228 (526)
Q Consensus       151 ~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~  228 (526)
                      ++++++++|||||||.||+|.+||.++......... ...+..+++++..+|++|..++. ..+.++..|+++++.+.++
T Consensus       208 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~  287 (567)
T PRK06178        208 LDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWD  287 (567)
T ss_pred             CCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCC
Confidence            789999999999999999999999998876655443 35678899999999999998875 4555677788888888889


Q ss_pred             HHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEe--ccCCCCCHHHHHHHhh-cCCeeec-ccccccCC
Q 009756          229 AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVN--TAGAPPPPSLLFAMSQ-KGFRITH-TYGLTELT  304 (526)
Q Consensus       229 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~--~~Ge~l~~~~~~~~~~-~~~~i~~-~YG~tE~~  304 (526)
                      +..++..++++++|.+.++|..+..+.......... +++++.+.  ..++.++++..+.+++ ++..++. .||+||++
T Consensus       288 ~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~  366 (567)
T PRK06178        288 AVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYD-LSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETH  366 (567)
T ss_pred             HHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCC-cchheeeeeccccccCCHHHHHHHHHHhCCccccccccccccc
Confidence            999999999999999999999999988765443334 67777754  3458999999999884 5776664 79999997


Q ss_pred             CCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh
Q 009756          305 GPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF  384 (526)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~  384 (526)
                      ..++........+ .   .......++|.|++++ +++++|++++.+++.|  +.|||+++|++++.||+++++.+...|
T Consensus       367 ~~~~~~~~~~~~~-~---~~~~~~~~vG~p~~g~-~v~v~d~~~~~~~~~g--~~Gel~v~g~~v~~gY~~~~~~~~~~~  439 (567)
T PRK06178        367 TCDTFTAGFQDDD-F---DLLSQPVFVGLPVPGT-EFKICDFETGELLPLG--AEGEIVVRTPSLLKGYWNKPEATAEAL  439 (567)
T ss_pred             ccceeccccccCc-c---ccccCCcccccccCCc-EEEEEcCCCCCcCCCC--CceEEEEECCcccccccCChhhhhhcc
Confidence            6544322111000 0   0012235789999999 5999997779999988  799999999999999999999998889


Q ss_pred             cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCch
Q 009756          385 ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE  464 (526)
Q Consensus       385 ~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  464 (526)
                      .+|||+|||++++++||+++++||.+|+|+.+|.+++|.+||+++.++++|.+++|++.++...++.++++++..++...
T Consensus       440 ~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~  519 (567)
T PRK06178        440 RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADL  519 (567)
T ss_pred             cCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999988888899999998765543


Q ss_pred             hhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          465 LDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       465 ~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                           ..++++++++++++.+++|. +.+++ +|+|++||++|+.|++++.+.
T Consensus       520 -----~~~~l~~~~~~~l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~~  566 (567)
T PRK06178        520 -----TAAALQAWCRENMAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEEL  566 (567)
T ss_pred             -----CHHHHHHHHHhcCcccCCce-EEEeccCCCCCccceeHHHHHHHHHhh
Confidence                 45789999999999999997 66666 999999999999999998764

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=3.3e-61  Score=541.05  Aligned_cols=483  Identities=21%  Similarity=0.288  Sum_probs=391.4

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+ ++++||+|+++++|++++++++|||+++|++++|+++..+.+++.+++++++++++++
T Consensus       644 y~el~~~~~~~a~~-L---~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~  718 (1146)
T PRK08633        644 YGKALTGALALARL-L---KR-ELKDEENVGILLPPSVAGALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVIT  718 (1146)
T ss_pred             HHHHHHHHHHHHHH-H---HH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEE
Confidence            78999999999999 8   66 4899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHH--HhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCC-CC----cCCCCCCCCCC
Q 009756           81 DQEFFSLAEEALK--MMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGD-PE----FAWKPPEDEWQ  153 (526)
Q Consensus        81 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~----~~~~~~~~~~~  153 (526)
                      +++....+.+...  ...       ....++.+++.....        .....+.+...... +.    ........++|
T Consensus       719 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  783 (1146)
T PRK08633        719 SRKFLEKLKNKGFDLELP-------ENVKVIYLEDLKAKI--------SKVDKLTALLAARLLPARLLKRLYGPTFKPDD  783 (1146)
T ss_pred             cHHHHHHHhccCCchhcc-------cCceEEEeehhcccc--------chhHHHHHHHHhccCCHHHHHhhccCCCCCCC
Confidence            8876554432100  111       234455554321110        00111222211110 00    00012356789


Q ss_pred             eEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeec-ccCHHH
Q 009756          154 SIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLR-QVTAKA  231 (526)
Q Consensus       154 ~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~-~~~~~~  231 (526)
                      +++++|||||||.||+|.+||+++..........++..++|++++.+|++|..++.. .+.++..|+++++.+ ..++..
T Consensus       784 ~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~  863 (1146)
T PRK08633        784 TATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALG  863 (1146)
T ss_pred             EEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHH
Confidence            999999999999999999999999998888888888999999999999999999866 556667777777665 478999


Q ss_pred             HHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcccc
Q 009756          232 VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVC  310 (526)
Q Consensus       232 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~  310 (526)
                      +++.++++++|++.++|++++.+.+........ ++++|.+++||+++++++.+.++ .+++++++.||+||++++++..
T Consensus       864 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~  942 (1146)
T PRK08633        864 IAKLVAKHRATILLGTPTFLRLYLRNKKLHPLM-FASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVN  942 (1146)
T ss_pred             HHHHHHHcCCeEEEecHHHHHHHHhccccCccc-CCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEe
Confidence            999999999999999999999998865544445 78999999999999999999998 5699999999999998766543


Q ss_pred             ccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcC----
Q 009756          311 AWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN----  386 (526)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~----  386 (526)
                      ......... .........++|.|.|++ +++|+|++++++++.|  +.|||+++|++++.||+++++.+.+.+.+    
T Consensus       943 ~~~~~~~~~-~~~~~~~~~~vG~p~~~~-~v~i~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~ 1018 (1146)
T PRK08633        943 LPDVLAADF-KRQTGSKEGSVGMPLPGV-AVRIVDPETFEELPPG--EDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGI 1018 (1146)
T ss_pred             cCccccccc-ccccCCCCCCccccCCCC-EEEEEcCCCCccCCCC--CceEEEEcCCCccccccCCccchHHHhhcCCCC
Confidence            221110000 001112347899999999 6999998889999988  79999999999999999999999998877    


Q ss_pred             CeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCC--CeeeeEEEEcCCCCCCceeEEEEEecCCCch
Q 009756          387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP--LVLEAAVVARPDERWGESPCAFVTLKPEADE  464 (526)
Q Consensus       387 g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~--~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  464 (526)
                      |||+|||++++++||.+++.||.||++|++|++|+|.+||+++.+++  .+.+++|++.+++..|+.++++++.. ..  
T Consensus      1019 ~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~-~~-- 1095 (1146)
T PRK08633       1019 GWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCG-AE-- 1095 (1146)
T ss_pred             CeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecC-cc--
Confidence            99999999999999999999999999999999999999999999998  46689999999999899999988862 11  


Q ss_pred             hhhhhhHHHHHHHHHh-cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          465 LDKGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       465 ~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                           ..+++++++.+ .++.+++|..+.+++ +|+|++||++|++|+++..+.
T Consensus      1096 -----~~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633       1096 -----DVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred             -----CHHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence                 34667777764 699999999999888 999999999999999987664

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.8e-60  Score=487.69  Aligned_cols=478  Identities=27%  Similarity=0.360  Sum_probs=390.6

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.||.++++++|++ |   .+.|+++||+|+++++|++++++++|||+++|++++++++.++.+++.++++.++++++++
T Consensus        14 y~el~~~~~~la~~-l---~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         14 FDELAQRAARAAGG-L---AALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            68999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCch-----hhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeE
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSK-----QLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI  155 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a  155 (526)
                      +.+....+.+...          ....++.+........     ........+..++++.+......    .....++++
T Consensus        90 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~a  155 (509)
T PRK12406         90 HADLLHGLASALP----------AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEPY----DGPPVPQPQ  155 (509)
T ss_pred             ccchhhhhhhhhh----------cccceeecccccccccccccccccccCCCCccCHHHHhcccCcc----CCCCCCCce
Confidence            8876654433221          1112222211100000     00001122345566654432211    123567999


Q ss_pred             EEEecCCCCCCccceeecchh---HHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHH
Q 009756          156 ALGYTSGTTASPKGVVVSHRG---AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAV  232 (526)
Q Consensus       156 ~i~~TSGsTG~pK~v~~t~~~---l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  232 (526)
                      +++|||||||.||+|.++|..   +..........+++..+++++...|++|..+..+.+..+..|+++++.+..++..+
T Consensus       156 ~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  235 (509)
T PRK12406        156 SMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEEL  235 (509)
T ss_pred             EEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHH
Confidence            999999999999999987654   33334444566788999999999999999888777777888888888888899999


Q ss_pred             HHHHHhcCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHhh-cCCeeecccccccCCCCccc
Q 009756          233 YTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASV  309 (526)
Q Consensus       233 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~  309 (526)
                      ++.++++++|.+.++|+++..|+.....  ...+ ++++|.+++||+++++++++++.+ +++.+++.||+||++.+++.
T Consensus       236 ~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~  314 (509)
T PRK12406        236 LQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYD-VSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFA  314 (509)
T ss_pred             HHHHHHcCCeEEEccHHHHHHHHhCchhhcccCC-CCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEec
Confidence            9999999999999999999999876432  2233 789999999999999999999985 58899999999999875543


Q ss_pred             cccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccc-cccCChhhhhhhhcCCe
Q 009756          310 CAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK-GYLKNPKANEEAFANGW  388 (526)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~-gy~~~~~~~~~~~~~g~  388 (526)
                      +...          .....+++|.+.+++ .++++|+. +++++.|  +.|||+++|+.++. +|++++..+...+.++|
T Consensus       315 ~~~~----------~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~  380 (509)
T PRK12406        315 TSED----------ALSHPGTVGKAAPGA-ELRFVDED-GRPLPQG--EIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGF  380 (509)
T ss_pred             Cccc----------ccccCCCcCccCCCc-EEEEECCC-CCCCCCC--CceEEEEECCccccccccCCchhcccccCCCC
Confidence            3211          011236789999999 59999976 8888887  79999999998875 99999988888888999


Q ss_pred             eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756          389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG  468 (526)
Q Consensus       389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  468 (526)
                      |+|||+++++++|.+++.||.||++|++|.+|+|.+||..|.++++|.++++++.++...++.++++++..+....    
T Consensus       381 ~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----  456 (509)
T PRK12406        381 ITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATL----  456 (509)
T ss_pred             eEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCC----
Confidence            9999999999999999999999999999999999999999999999999999999998888899999998765433    


Q ss_pred             hhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          469 KLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       469 ~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                       ..+++++.+++.++.+++|..+.+.+ ||+|++||++|++|++.+.+.
T Consensus       457 -~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~  504 (509)
T PRK12406        457 -DEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWAN  504 (509)
T ss_pred             -CHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHhh
Confidence             45889999999999999999999888 999999999999999987754

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-60  Score=484.47  Aligned_cols=438  Identities=28%  Similarity=0.378  Sum_probs=367.7

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|.. |   +     ++|+|+++++|++++++++|||+++|++++|+++..+.+++.+++++++++++++
T Consensus        28 y~el~~~~~~~a~~-L---~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~   98 (471)
T PRK07787         28 RSDLAGAATAVAER-V---A-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLG   98 (471)
T ss_pred             HHHHHHHHHHHHHH-h---c-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEEEe
Confidence            78999999999999 8   5     4799999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++...         .       ..+.+. +....              .++           .......++++++++||
T Consensus        99 ~~~~~~---------~-------~~~~~~-~~~~~--------------~~~-----------~~~~~~~~~~~a~i~~T  136 (471)
T PRK07787         99 PAPDDP---------A-------GLPHVP-VRLHA--------------RSW-----------HRYPEPDPDAPALIVYT  136 (471)
T ss_pred             cCCccc---------c-------ccccee-eeccc--------------ccc-----------ccCCCCCCCceEEEEEC
Confidence            864110         0       111110 00000              000           00011356899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecccCHHHHHHHHHhc
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQVTAKAVYTAIATH  239 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  239 (526)
                      |||||.||+|.++|.++...+......+++..+++++..+|++|..++.. .+.++..|++++.....++..+++.++ +
T Consensus       137 SGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~  215 (471)
T PRK07787        137 SGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-E  215 (471)
T ss_pred             CCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-h
Confidence            99999999999999999998888888888999999999999999998875 455566677777777789999999999 9


Q ss_pred             CceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-cCCeeecccccccCCCCccccccCCCCCC
Q 009756          240 GVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDS  318 (526)
Q Consensus       240 ~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~  318 (526)
                      ++|++.++|+.+..|.+.... ... ++++|.+++||+++++++.+++.+ ++.++++.||+||++...+....      
T Consensus       216 ~~t~~~~~P~~~~~l~~~~~~-~~~-l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~------  287 (471)
T PRK07787        216 GGTLYFGVPTVWSRIAADPEA-ARA-LRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRAD------  287 (471)
T ss_pred             CceEEEcchHHHHHHHhCccc-ccc-ccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCC------
Confidence            999999999999999875432 223 789999999999999999999984 68999999999999754433211      


Q ss_pred             CCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeecCceeEE
Q 009756          319 LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVK  397 (526)
Q Consensus       319 ~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~~  397 (526)
                           ......++|.|.+++ .++|+|++ +.+++..++..|||+++|++++.||+++++.+...|. +|||+|||+|++
T Consensus       288 -----~~~~~~~vG~~~~g~-~~~i~d~~-~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~  360 (471)
T PRK07787        288 -----GERRPGWVGLPLAGV-ETRLVDED-GGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVV  360 (471)
T ss_pred             -----CcccCCcccccCCCc-EEEEECCC-CCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEE
Confidence                 011236799999999 69999987 7888743335899999999999999999999988886 899999999999


Q ss_pred             cCCceEEEeccc-cceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHH
Q 009756          398 HPDNYIEIKDRL-KDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK  476 (526)
Q Consensus       398 ~~~g~~~~~GR~-~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  476 (526)
                      ++||.+++.||. |++++.+|.+++|.+||.+|.+++.|.+++|++.++...++.++++++.....       ..+++.+
T Consensus       361 ~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~-------~~~~l~~  433 (471)
T PRK07787        361 DPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDV-------AADELID  433 (471)
T ss_pred             cCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCC-------CHHHHHH
Confidence            999999999996 89999999999999999999999999999999999988889999999974332       4578999


Q ss_pred             HHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHH
Q 009756          477 FCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK  512 (526)
Q Consensus       477 ~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~  512 (526)
                      +++++++.+++|..+.+++ ||+|.+||++|+.|+++
T Consensus       434 ~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~~  470 (471)
T PRK07787        434 FVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLSE  470 (471)
T ss_pred             HHHhhcccccCCcEEEEeccCCCCCCccccHHHhccC
Confidence            9999999999999999888 99999999999999763

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.3e-60  Score=492.15  Aligned_cols=479  Identities=25%  Similarity=0.320  Sum_probs=385.0

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|.+ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        51 y~~l~~~~~~~a~~-L---~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~  126 (557)
T PRK07059         51 YGELDELSRALAAW-L---QSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVV  126 (557)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEE
Confidence            78999999999999 9   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCc--------------hhhhhhhhcCcccHHHHHhhCCCCcCCC
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDS--------------KQLEYALARGAIEYEKFLETGDPEFAWK  146 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~  146 (526)
                      ++.....+.+.....        ..+.++.........              ........++...+.+.+..........
T Consensus       127 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (557)
T PRK07059        127 LENFATTVQQVLAKT--------AVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKP  198 (557)
T ss_pred             chhhHHHHHHhhccc--------CCceeEEecccccccccccccccccccccccccccCCCCcccHHHHhhccCCCCCCC
Confidence            887665555443321        123333322110000              0000011123345555554433222222


Q ss_pred             CCCCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhC----C---cCCcEEEEecccccchhhH-HHHHHHhhc
Q 009756          147 PPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG----M---NEGAVFLWTLPMFHGNGWS-YTWSLAALC  218 (526)
Q Consensus       147 ~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~----~---~~~~~~~~~~p~~~~~~~~-~~~~~~~~g  218 (526)
                      ....++++++++|||||||.||+|.++|.+++.++........    .   .....+++.+|++|.+++. ..+..+..|
T Consensus       199 ~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g  278 (557)
T PRK07059        199 VKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTG  278 (557)
T ss_pred             CCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhc
Confidence            3356789999999999999999999999998776544332221    1   1234677889999988764 344556677


Q ss_pred             ceeeeec-ccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeec
Q 009756          219 GTSICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITH  296 (526)
Q Consensus       219 ~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~  296 (526)
                      ++.++.+ ..++..+++.++++++|.+.++|.++..+.......... ++++|.++.||+++++.+.+.+. .+++++++
T Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~-~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~  357 (557)
T PRK07059        279 GRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLD-FSKLIVANGGGMAVQRPVAERWLEMTGCPITE  357 (557)
T ss_pred             ceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCC-chhheEEEeccccCCHHHHHHHHHHhCCCeee
Confidence            7776665 357889999999999999999999999999876555445 78999999999999999999887 46999999


Q ss_pred             ccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCC
Q 009756          297 TYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN  376 (526)
Q Consensus       297 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~  376 (526)
                      .||+||++.+++.+....          .....++|.|++++ .++|+|++ +++++.|  +.|||+++|+.++.||+++
T Consensus       358 ~YG~tE~~~~~~~~~~~~----------~~~~~~vG~p~~g~-~v~i~d~~-~~~~~~g--~~Gel~v~g~~~~~gY~~~  423 (557)
T PRK07059        358 GYGLSETSPVATCNPVDA----------TEFSGTIGLPLPST-EVSIRDDD-GNDLPLG--EPGEICIRGPQVMAGYWNR  423 (557)
T ss_pred             ccccccccchhhcCCCCC----------CCcCCcccCccCCc-EEEEECCC-CCCCCCC--CceEEEEeCCccchhhhcC
Confidence            999999987665432211          11236899999999 69999987 8899888  7899999999999999999


Q ss_pred             hhhhhhhhc-CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEE
Q 009756          377 PKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF  455 (526)
Q Consensus       377 ~~~~~~~~~-~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  455 (526)
                      ++.+...|. +|||+|||++++++||.+++.||.+|+|+++|.+|+|.+||+++.++++|.+++|++.++...++.++++
T Consensus       424 ~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~  503 (557)
T PRK07059        424 PDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLF  503 (557)
T ss_pred             HHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEE
Confidence            999888774 7999999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             EEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHH
Q 009756          456 VTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK  512 (526)
Q Consensus       456 v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~  512 (526)
                      ++..+.. .     ..+++++++.++++.+++|..+.+++ +|+|++||++|+.|+++
T Consensus       504 v~~~~~~-~-----~~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        504 VVKKDPA-L-----TEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRDG  555 (557)
T ss_pred             EEeCCCC-C-----CHHHHHHHHHHhcccccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence            8866432 1     34789999999999999999999988 99999999999999865

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-60  Score=497.47  Aligned_cols=475  Identities=23%  Similarity=0.278  Sum_probs=368.0

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        65 y~eL~~~~~~la~~-L---~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~  140 (600)
T PRK08279         65 YAELNARANRYAHW-A---AARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIV  140 (600)
T ss_pred             HHHHHHHHHHHHHH-H---HhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCC-cCCCCCCCCCCeEEEEe
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE-FAWKPPEDEWQSIALGY  159 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~i~~  159 (526)
                      +++....+.+......       ....++..++....       ....+.++.+.....+.. .........+++++++|
T Consensus       141 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~  206 (600)
T PRK08279        141 GEELVEAFEEARADLA-------RPPRLWVAGGDTLD-------DPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIY  206 (600)
T ss_pred             ChHHHHHHHHHhhhhc-------ccceEEEecCcccc-------ccccHHHHhhhcccCCccCCCcccCCCccccEEEEE
Confidence            9987777666544433       22223333221100       001112222222111111 11112246689999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-cccCHHHHHHHHHh
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIAT  238 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~  238 (526)
                      ||||||.||+|.+||.++.+.+......++++++++++..+|++|..++...+...+.+|+.+++ +.+++..+++.+++
T Consensus       207 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~  286 (600)
T PRK08279        207 TSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRR  286 (600)
T ss_pred             cCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHH
Confidence            99999999999999999999998888888999999999999999999988777666655555544 67899999999999


Q ss_pred             cCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCC-eeecccccccCCCCccccccCCCC
Q 009756          239 HGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGF-RITHTYGLTELTGPASVCAWKPEW  316 (526)
Q Consensus       239 ~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~-~i~~~YG~tE~~~~~~~~~~~~~~  316 (526)
                      +++|++.++|++++.+.......... ..++|.+  +|+.+++++.+.+. .++. ++++.||+||++...+...     
T Consensus       287 ~~~t~~~~~p~l~~~l~~~~~~~~~~-~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-----  358 (600)
T PRK08279        287 YRATAFQYIGELCRYLLNQPPKPTDR-DHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINVF-----  358 (600)
T ss_pred             hcceEEeehHHHHHHHHhCCCCcccc-CcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeecccC-----
Confidence            99999999999999998875444333 5567654  47789999999988 4555 5999999999875332210     


Q ss_pred             CCCCcccccccccccceeee----ecC--------CceeecCCCCC--ccCCCCCceEEEE--EcCccccccccCChhhh
Q 009756          317 DSLPFETQARLNARQGVRTI----CLD--------GLDVIDARTNQ--PVPADGKTIGEIV--MRGSCVMKGYLKNPKAN  380 (526)
Q Consensus       317 ~~~~~~~~~~~~~~~G~~~~----~~~--------~~~v~d~~~g~--~~~~~~~~~Gel~--v~~~~~~~gy~~~~~~~  380 (526)
                               ....++|.+.+    +..        ...+.+.+ +.  .++.+  +.||++  +.|+.++.|| +++..+
T Consensus       359 ---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~g--~~Gel~~~i~~~~~~~GY-~~~~~t  425 (600)
T PRK08279        359 ---------NFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDAD-GRCIKVKPG--EVGLLIGRITDRGPFDGY-TDPEAS  425 (600)
T ss_pred             ---------CCCcccccccccccccceeeeeccCcCceeeCCC-CccccCCCC--CceeEEEEecCccccccc-CCchhh
Confidence                     01133444333    110        12233332 32  34444  789998  7899999999 888777


Q ss_pred             hhhhc-------CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCC-Ccee
Q 009756          381 EEAFA-------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW-GESP  452 (526)
Q Consensus       381 ~~~~~-------~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~-~~~~  452 (526)
                      ...|.       ++||+|||+|++++||.+++.||.||+||++|++|+|.+||+++.++|+|.+|+|++.+.+.. +...
T Consensus       426 ~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~  505 (600)
T PRK08279        426 EKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAG  505 (600)
T ss_pred             HHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccc
Confidence            76652       579999999999999999999999999999999999999999999999999999999876543 4445


Q ss_pred             EEEEEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCCc
Q 009756          453 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPV  519 (526)
Q Consensus       453 ~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~  519 (526)
                      +++++..++...     ..++++++++++|+.|++|..+++++ ||+|.+||++|++|++++.+....
T Consensus       506 ~~~vv~~~~~~~-----~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~  568 (600)
T PRK08279        506 MAAIVLADGAEF-----DLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDPSKV  568 (600)
T ss_pred             eeEEEecCCccC-----CHHHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCcccc
Confidence            666666543333     46889999999999999999999988 999999999999999988877543

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-60  Score=489.92  Aligned_cols=448  Identities=25%  Similarity=0.319  Sum_probs=371.1

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        63 y~el~~~~~~la~~-L---~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~  138 (516)
T PRK13383         63 YRELQRATESLARR-L---TRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVA  138 (516)
T ss_pred             HHHHHHHHHHHHHH-H---HhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEE
Confidence            78999999999999 9   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+...             ...++.++....              .    .....     ..+...++.++++||
T Consensus       139 ~~~~~~~~~~~-------------~~~~~~~~~~~~--------------~----~~~~~-----~~p~~~~~~~~il~T  182 (516)
T PRK13383        139 DNEFAERIAGA-------------DDAVAVIDPATA--------------G----AEESG-----GRPAVAAPGRIVLLT  182 (516)
T ss_pred             chhHHHHHHhh-------------hcceEEeccchh--------------h----hhcCC-----CCCCCCCCCcEEEEC
Confidence            88765443321             112233322100              0    00000     011233456799999


Q ss_pred             CCCCCCccceeecchhHHH--HHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHh
Q 009756          161 SGTTASPKGVVVSHRGAYL--MSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIAT  238 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~  238 (526)
                      |||||.||+|.++|.....  ........+++..+++++...|++|.+++...+.++..|++++....+++..+++.+++
T Consensus       183 SGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~  262 (516)
T PRK13383        183 SGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAALAQASL  262 (516)
T ss_pred             CCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECCCCCHHHHHHHHHH
Confidence            9999999999999974221  12223345678899999999999999999888888888988888788899999999999


Q ss_pred             cCceeeeccHHHHHHHHccCCCCC-CCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCCC
Q 009756          239 HGVTHFCAAPVVLNAIANASPEDT-ILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEW  316 (526)
Q Consensus       239 ~~~t~l~~~P~~~~~l~~~~~~~~-~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~  316 (526)
                      +++|.+.++|+++..|........ ...++++|.+++||+++++++++++. .++..+++.||+||++..+..+...   
T Consensus       263 ~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~---  339 (516)
T PRK13383        263 HRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPAD---  339 (516)
T ss_pred             hCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccc---
Confidence            999999999999999987643211 11278999999999999999999988 5689999999999998655432110   


Q ss_pred             CCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeE
Q 009756          317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAV  396 (526)
Q Consensus       317 ~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~  396 (526)
                             ......++|.|++++ .++|+|++ +++++.+  +.|||+++|+.++.||++.+.   ..+.+|||+|||+++
T Consensus       340 -------~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~  405 (516)
T PRK13383        340 -------LRDAPETVGKPVAGC-PVRILDRN-NRPVGPR--VTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGY  405 (516)
T ss_pred             -------cccCCCcccCCCCCc-EEEEECCC-CCCCCCC--CceEEEEecCcccccccCCch---hheecCceecceeEE
Confidence                   112236899999999 69999976 8888887  799999999999999998753   345689999999999


Q ss_pred             EcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHH
Q 009756          397 KHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK  476 (526)
Q Consensus       397 ~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  476 (526)
                      ++++|++++.||.+|+|+++|.+|+|.+||.+|.++|.|.++++++.++...++.+.++|+..++...     ...++++
T Consensus       406 ~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~-----~~~~l~~  480 (516)
T PRK13383        406 LDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGV-----DAAQLRD  480 (516)
T ss_pred             EcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCC-----CHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888999999998765543     4578999


Q ss_pred             HHHhcCCCccCCcEEEecc-ccCCCCccccHHHHH
Q 009756          477 FCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLR  510 (526)
Q Consensus       477 ~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~  510 (526)
                      +++++++.+++|..+.+++ ||+|++||++|++|+
T Consensus       481 ~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~  515 (516)
T PRK13383        481 YLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP  515 (516)
T ss_pred             HHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence            9999999999999999888 999999999999874

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-60  Score=486.86  Aligned_cols=462  Identities=25%  Similarity=0.365  Sum_probs=371.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|+. |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        27 y~el~~~~~~la~~-L---~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~  102 (501)
T PRK13390         27 YRQLDDDSAALARV-L---YDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVA  102 (501)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      ++...........          .....+.++...           .....+++......+.     .....++++++||
T Consensus       103 ~~~~~~~~~~~~~----------~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-----~~~~~~~a~i~~T  156 (501)
T PRK13390        103 SAALDGLAAKVGA----------DLPLRLSFGGEI-----------DGFGSFEAALAGAGPR-----LTEQPCGAVMLYS  156 (501)
T ss_pred             cchhhhHHHHhhh----------ccceEEEecCcc-----------cccccHHHHhcccCCC-----CCCCcccEEEEeC
Confidence            8754332222111          112222222110           1122344333221111     1122357999999


Q ss_pred             CCCCCCccceee--cchhHHHHH----HhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHH
Q 009756          161 SGTTASPKGVVV--SHRGAYLMS----LNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYT  234 (526)
Q Consensus       161 SGsTG~pK~v~~--t~~~l~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  234 (526)
                      |||||.||+|.+  +|.++....    ......+.+..+++++..+|++|..++......+..|+++++.+.+++..+++
T Consensus       157 SGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  236 (501)
T PRK13390        157 SGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLG  236 (501)
T ss_pred             CCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcCCcCHHHHHH
Confidence            999999999996  455443321    11233467889999999999999988765555566788887777789999999


Q ss_pred             HHHhcCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHhh-cCCeeecccccccCCCCccccc
Q 009756          235 AIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCA  311 (526)
Q Consensus       235 ~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~  311 (526)
                      .++++++|++.++|+++..|.+....  .... ++++|.++.+|+++++++.+.+.+ ++.++++.||+||+++++....
T Consensus       237 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  315 (501)
T PRK13390        237 HVERYRITVTQMVPTMFVRLLKLDADVRTRYD-VSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDS  315 (501)
T ss_pred             HHHHcCCeEEEecHHHHHHHHhccchhcccCC-hhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecc
Confidence            99999999999999999998875432  2223 679999999999999999999884 5889999999999976543211


Q ss_pred             cCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc---CCe
Q 009756          312 WKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA---NGW  388 (526)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~g~  388 (526)
                        ..        .....+++|.|.++ . ++|+|++ +++++.|  +.|||+++|++++.||+++++.+...|.   ++|
T Consensus       316 --~~--------~~~~~~~~G~~~~g-~-~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w  380 (501)
T PRK13390        316 --PD--------WLAHPGSVGRSVLG-D-LHICDDD-GNELPAG--RIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFW  380 (501)
T ss_pred             --hh--------hccCCCCcCCcccc-e-EEEECCC-CCCCCCC--CceEEEEecCCccccccCChhhhHHhhccCCCce
Confidence              11        01223678999998 3 8999976 8899888  8999999999999999999999888774   579


Q ss_pred             eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756          389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG  468 (526)
Q Consensus       389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  468 (526)
                      ++|||++++++||.+++.||.||+|+.+|.+|+|.+||++|.+++.|.+++|++.+++..++.+++++++.++....  .
T Consensus       381 ~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~--~  458 (501)
T PRK13390        381 TTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGS--D  458 (501)
T ss_pred             EEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcc--h
Confidence            99999999999999999999999999999999999999999999999999999999998899999999887654321  1


Q ss_pred             hhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHH
Q 009756          469 KLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLR  510 (526)
Q Consensus       469 ~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~  510 (526)
                      ...+++.++++++|+.+++|..+++++ ||+|++||++|++|+
T Consensus       459 ~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~  501 (501)
T PRK13390        459 ELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR  501 (501)
T ss_pred             hhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence            145789999999999999999999888 999999999999874

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=4.9e-61  Score=469.42  Aligned_cols=491  Identities=21%  Similarity=0.215  Sum_probs=393.1

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+|.++++.++|.. |   +++|+++++.|+|+.-|+++|+++.+||...|+++|||...++++.+.++++++...++|+
T Consensus       111 Y~q~~e~~~~~~~~-l---~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~v  186 (691)
T KOG1256|consen  111 YKQVYERAENLGSG-L---RKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFV  186 (691)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc-chHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCC-CCCCCCCeEEEE
Q 009756           81 DQ-EFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWK-PPEDEWQSIALG  158 (526)
Q Consensus        81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~a~i~  158 (526)
                      ++ +....+.+......     .++++.++.+++........+......+.+|+++++.+....... .+..++|.|.|.
T Consensus       187 d~~~k~~~ll~~~~~~~-----~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~  261 (691)
T KOG1256|consen  187 DNAKKAEKLLEIKENDS-----LPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATIC  261 (691)
T ss_pred             eCHHHHHHHHhhccccc-----CccceeEEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEE
Confidence            94 44444444333211     126889999988754433333334455889999999987655444 468899999999


Q ss_pred             ecCCCCCCccceeecchhHHHHHHhhHh---Hh---CCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHH
Q 009756          159 YTSGTTASPKGVVVSHRGAYLMSLNGAL---IW---GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAV  232 (526)
Q Consensus       159 ~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  232 (526)
                      |||||||.||||++||+|+.+.+.....   ..   .....|++++++|+.|++...........|+++.+.. .|+..+
T Consensus       262 yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~-gD~~~l  340 (691)
T KOG1256|consen  262 YTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFAR-GDILKL  340 (691)
T ss_pred             EcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEec-CChHHH
Confidence            9999999999999999999886543221   11   2234699999999999999988888887788776665 688889


Q ss_pred             HHHHHhcCceeeeccHHHHHHHHccCC----CC-------------------------C-CC--------------CCCc
Q 009756          233 YTAIATHGVTHFCAAPVVLNAIANASP----ED-------------------------T-IL--------------PLTN  268 (526)
Q Consensus       233 ~~~i~~~~~t~l~~~P~~~~~l~~~~~----~~-------------------------~-~~--------------~l~~  268 (526)
                      .+.++..+||.+.++|.+|+++-....    ..                         . ..              --..
T Consensus       341 ~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~  420 (691)
T KOG1256|consen  341 TDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGN  420 (691)
T ss_pred             HHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCc
Confidence            999999999999999999988764310    00                         0 00              0347


Q ss_pred             eeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCC
Q 009756          269 VVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDAR  347 (526)
Q Consensus       269 lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~  347 (526)
                      +|.+++|++|+++++..+++ ..||+++++||+||+++.++.....+           ...+++|.|+|++ +++++|..
T Consensus       421 vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d-----------~~lgsvG~p~p~~-~vKL~dvp  488 (691)
T KOG1256|consen  421 VRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGD-----------NVLGSVGPPVPGN-EVKLVDVP  488 (691)
T ss_pred             eeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCCC-----------CCCCCcCCcccCc-eEEEechH
Confidence            89999999999999999999 55899999999999986665532211           1348999999999 69999988


Q ss_pred             CCCccCCCCCceEEEEEcCccccccccCChhhhhhhh-cCCeeecCceeEEcCCceEEEeccccceee-eCCeeechHHH
Q 009756          348 TNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVEV  425 (526)
Q Consensus       348 ~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~-~~G~~v~~~~i  425 (526)
                      .-+....+  ..|||+|+|+++++||+++|+.|.+.+ +|||++|||+|+|+++|.+++.||.+++|| ..|+.|.|+.|
T Consensus       489 e~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~I  566 (691)
T KOG1256|consen  489 EMNYDADG--SKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKI  566 (691)
T ss_pred             HhCcCcCC--CcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcCCCCccChHHH
Confidence            77776766  469999999999999999999999999 699999999999999999999999999999 89999999999


Q ss_pred             HHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCch----hhh---------------hhhHHHHHHHHH-hcCCCc
Q 009756          426 EKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE----LDK---------------GKLAEDVSKFCR-AKMPSY  485 (526)
Q Consensus       426 e~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~---------------~~~~~~l~~~l~-~~l~~~  485 (526)
                      |++..+.+.|.+..|.+.+...   .++|.|+++++...    ++.               +....++.++.+ +.+..+
T Consensus       567 Eniy~~~~~V~qi~V~g~s~~~---~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~f  643 (691)
T KOG1256|consen  567 ENIYKRSLPVQQIFVLGDSLRS---FLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGF  643 (691)
T ss_pred             HHHHhcCCceEEEEEECCcchh---cEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccCh
Confidence            9999999999999999887654   58999999765432    100               111223333322 235666


Q ss_pred             cCCcEEEecc----cc---CCCCccccHHHHHHHHHhcCC
Q 009756          486 WVPKSVVFAA----LP---KSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       486 ~~p~~~~~~~----lP---~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      .....+.+.+    +.   .||+-|+.|..|.+.|.++..
T Consensus       644 e~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id  683 (691)
T KOG1256|consen  644 EQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQID  683 (691)
T ss_pred             hhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHH
Confidence            6666666543    22   488999999999999987643

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=7.7e-62  Score=586.91  Aligned_cols=459  Identities=20%  Similarity=0.261  Sum_probs=389.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||+++++++|+. |   .+.|+++|++|+|+++|++++++++|||+++|++++|++|.++.+++.++++.++++++|+
T Consensus      3123 Y~eL~~~a~~lA~~-L---~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt 3198 (3956)
T PRK12467       3123 YAELNRRANRLAHR-L---IAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLT 3198 (3956)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEe
Confidence            88999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +......+...            ....++.++....                     .......+.....++++++|+||
T Consensus      3199 ~~~~~~~~~~~------------~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~a~ii~T 3245 (3956)
T PRK12467       3199 QAHLLEQLPAP------------AGDTALTLDRLDL---------------------NGYSENNPSTRVMGENLAYVIYT 3245 (3956)
T ss_pred             chhhhhhcccc------------cCCceeeecchhh---------------------cccCCCCCcccCCCCceEEEEEc
Confidence            87654332111            1122333322110                     00111111123567899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc--cCHHHHHHHHHh
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ--VTAKAVYTAIAT  238 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~i~~  238 (526)
                      |||||.||||+++|+++.+.+......++++++++++...|++|..+....+.++..|+++++.+.  .++..+++.+++
T Consensus      3246 SGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~ 3325 (3956)
T PRK12467       3246 SGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHA 3325 (3956)
T ss_pred             cCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHH
Confidence            999999999999999999999998889999999999999999999998888999999998888764  689999999999


Q ss_pred             cCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhc--CCeeecccccccCCCCccccccCCCC
Q 009756          239 HGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEW  316 (526)
Q Consensus       239 ~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~  316 (526)
                      +++|++.++|+++..|......  .. ++++|.+++|||++++++.+++.+.  ++++++.||+||++..++......+ 
T Consensus      3326 ~~vt~~~~~Ps~l~~l~~~~~~--~~-~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~- 3401 (3956)
T PRK12467       3326 HRISIACFPPAYLQQFAEDAGG--AD-CASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGD- 3401 (3956)
T ss_pred             cCCEEEEcCHHHHHHHHhcccc--cC-CCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccc-
Confidence            9999999999999999875322  22 7889999999999999999999743  6789999999999876655432111 


Q ss_pred             CCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-C-------Ce
Q 009756          317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-N-------GW  388 (526)
Q Consensus       317 ~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~-------g~  388 (526)
                           ........++|+|++++ +++|+|.+ ++++|.|  +.|||+|+|+.+++||+++++.+..+|. +       +|
T Consensus      3402 -----~~~~~~~~~iG~p~~~~-~~~v~d~~-~~~vp~G--~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~ 3472 (3956)
T PRK12467       3402 -----AVCEAPYAPIGRPVAGR-SIYVLDGQ-LNPVPVG--VAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRL 3472 (3956)
T ss_pred             -----cccCCCCCCCccccCCC-EEEEECCC-CCCCCCC--CCceEEEcchhhhhhccCCcccchhhccCCCCCCCCcee
Confidence                 00112236799999999 69999977 9999998  8999999999999999999999999984 2       37


Q ss_pred             eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756          389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG  468 (526)
Q Consensus       389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  468 (526)
                      |+|||+|++++||.++++||.|++||++|.+|+|.|||.+|.++|+|.+++|+..... .++.+++|++.......    
T Consensus      3473 yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~-~~~~lva~v~~~~~~~~---- 3547 (3956)
T PRK12467       3473 YRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDGA-GGKQLVAYVVPADPQGD---- 3547 (3956)
T ss_pred             eccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEecCC-CCcEEEEEEeCCCCCcc----
Confidence            9999999999999999999999999999999999999999999999999999987544 47889999998765333    


Q ss_pred             hhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          469 KLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       469 ~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                       ..++++++++++||.|++|..+++++ ||+|++||++|++|++...+
T Consensus      3548 -~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~~ 3594 (3956)
T PRK12467       3548 -WRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKALPDPDAK 3594 (3956)
T ss_pred             -cHHHHHHHHhccCChhhCCCeeeeeccCCCCCCCccchhhcCCCCcc
Confidence             56889999999999999999999888 99999999999999876543

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=4.7e-60  Score=491.54  Aligned_cols=480  Identities=24%  Similarity=0.340  Sum_probs=384.3

Q ss_pred             CccchhhhhhcccccccCcc-CCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPL-LFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~-~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.+++.++|+. |   + +.|+++||+|+++++|++++++++|||+++|++++|++|.++..++.++++.+++++++
T Consensus        53 y~el~~~~~~la~~-L---~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi  128 (560)
T PRK08751         53 YREADQLVEQFAAY-L---LGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLV  128 (560)
T ss_pred             HHHHHHHHHHHHHH-H---HHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEE
Confidence            78999999999999 7   7 68999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCc---------------hhhhhhhhcCcccHHHHHhhCCCCcC
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDS---------------KQLEYALARGAIEYEKFLETGDPEFA  144 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~~~~~  144 (526)
                      +++.....+.+.....+        ...++..+......               ........++...+.+.+........
T Consensus       129 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (560)
T PRK08751        129 VIDNFGTTVQQVIADTP--------VKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRKHSM  200 (560)
T ss_pred             EcchhHHHHHHHhhCCC--------ccEEEEechhhhcccccchhhhhhhhhhhccccccCCCccccHHHHHhccCCCCC
Confidence            99877665555433322        23333322100000               00000011222344554443322111


Q ss_pred             CCCCCCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhC----CcCC-cEEEEecccccchhhHH-HHHHHhhc
Q 009756          145 WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG----MNEG-AVFLWTLPMFHGNGWSY-TWSLAALC  218 (526)
Q Consensus       145 ~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~----~~~~-~~~~~~~p~~~~~~~~~-~~~~~~~g  218 (526)
                      ......++++++++|||||||.||+|.++|.++..........+.    +..+ ++++...|++|.+++.. .+..+..|
T Consensus       201 ~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  280 (560)
T PRK08751        201 PTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIG  280 (560)
T ss_pred             CCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhcc
Confidence            122346789999999999999999999999998877766554443    3333 56778899999988754 34455567


Q ss_pred             ceeeeec-ccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-cCCeeec
Q 009756          219 GTSICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITH  296 (526)
Q Consensus       219 ~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~  296 (526)
                      ++.++.. ..++..+++.++++++|++.++|.++..+.+.......+ ++++|.+++||+++++.+.+.+.+ ++.++++
T Consensus       281 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~  359 (560)
T PRK08751        281 GCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQID-FSSLKMTLGGGMAVQRSVAERWKQVTGLTLVE  359 (560)
T ss_pred             ceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcc-hhhheeeeeCCCCCCHHHHHHHHHHhCCeEEE
Confidence            7666653 468899999999999999999999999999876554455 789999999999999999999984 5899999


Q ss_pred             ccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCC
Q 009756          297 TYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN  376 (526)
Q Consensus       297 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~  376 (526)
                      .||+||+++.++.+...          .....+++|.|.+++ .++++|++ +.+++.+  +.|||+++|+.++.||+++
T Consensus       360 ~YG~tE~~~~~~~~~~~----------~~~~~~~vG~~~~~~-~v~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~  425 (560)
T PRK08751        360 AYGLTETSPAACINPLT----------LKEYNGSIGLPIPST-DACIKDDA-GTVLAIG--EIGELCIKGPQVMKGYWKR  425 (560)
T ss_pred             eeccccCCCceeccccc----------ccccCCCcCccCCCc-eEEEECCC-CCCCCCC--CceEEEEecCccchhhcCC
Confidence            99999998765543211          011236789999999 69999976 8888887  7899999999999999999


Q ss_pred             hhhhhhhhc-CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEE
Q 009756          377 PKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF  455 (526)
Q Consensus       377 ~~~~~~~~~-~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  455 (526)
                      ++.+...|. +|||+|||+++++++|.+++.||.+|+|+.+|.+++|.+||..+.++++|.+++|++.++...++.+.++
T Consensus       426 ~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~  505 (560)
T PRK08751        426 PEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVV  505 (560)
T ss_pred             hhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEE
Confidence            999888874 7999999999999999999999999999999999999999999999999999999999988888888887


Q ss_pred             EEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHH
Q 009756          456 VTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA  513 (526)
Q Consensus       456 v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~  513 (526)
                      ++.... ..     ...+++++++++++.+++|..+.+++ ||+|++||++|++|+++.
T Consensus       506 v~~~~~-~~-----~~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~~  558 (560)
T PRK08751        506 IVKKDP-AL-----TAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDAA  558 (560)
T ss_pred             EEcCCC-CC-----CHHHHHHHHHHhhhhccCCeEEEEhhhCCCCccccccHHHHHHhh
Confidence            775432 22     45688899999999999999999988 999999999999998773

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7e-60  Score=484.07  Aligned_cols=475  Identities=26%  Similarity=0.350  Sum_probs=390.0

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.||.+.++++|++ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        14 y~el~~~v~~~a~~-L---~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         14 YGELEARSNRLAHG-L---RALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      ++.....+.+.......      ....++..+..           ......|++........    .....++.++++||
T Consensus        90 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~----~~~~~~~~a~i~~T  148 (502)
T PRK08276         90 SAALADTAAELAAELPA------GVPLLLVVAGP-----------VPGFRSYEEALAAQPDT----PIADETAGADMLYS  148 (502)
T ss_pred             ccchhhHHHHHhhhccc------cccEEEEeCCC-----------CCccccHHHHHhcCCCC----CCCCCCcceEEEEC
Confidence            98877666554433220      13344443221           01223455544432211    12355678999999


Q ss_pred             CCCCCCccceeecchhHHHHHH------hhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSL------NGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYT  234 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  234 (526)
                      |||||.||+|.++|.++.....      ..........++++++..|++|..++...+.++..|+++++.+.+++..+++
T Consensus       149 SGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  228 (502)
T PRK08276        149 SGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALA  228 (502)
T ss_pred             CCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHH
Confidence            9999999999999877543321      1111122346788999999999998887777888888888777889999999


Q ss_pred             HHHhcCceeeeccHHHHHHHHccCCCC--CCCCCCceeeEeccCCCCCHHHHHHHhh-cCCeeecccccccCCCCccccc
Q 009756          235 AIATHGVTHFCAAPVVLNAIANASPED--TILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCA  311 (526)
Q Consensus       235 ~i~~~~~t~l~~~P~~~~~l~~~~~~~--~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~  311 (526)
                      .++++++|++.++|+++..+.+.....  ..+ ++++|.++++|+++++++.+.+.+ ++..+++.||+||+++++....
T Consensus       229 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~  307 (502)
T PRK08276        229 LIERYRVTHSQLVPTMFVRMLKLPEEVRARYD-VSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITS  307 (502)
T ss_pred             HHHHhCCeEEEehHHHHHHHHhCccccCCCCC-cccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecC
Confidence            999999999999999999998875432  233 789999999999999999999984 5888999999999987554321


Q ss_pred             cCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcC-Ceee
Q 009756          312 WKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN-GWFH  390 (526)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-g~~~  390 (526)
                      ..          .....+++|.|+ +. .++++|++ +.+++.|  +.|||+++|+.++.||++++..+...+.+ +||+
T Consensus       308 ~~----------~~~~~~~~G~~~-~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~  372 (502)
T PRK08276        308 ED----------WLAHPGSVGKAV-LG-EVRILDED-GNELPPG--EIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVT  372 (502)
T ss_pred             cc----------ccccCCCcceec-cc-EEEEECCC-CCCCcCC--CceEEEEECCCccchhcCCHHHHHHHhcCCCcee
Confidence            11          011236789999 66 59999976 8888877  79999999999999999999999988865 9999


Q ss_pred             cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhh
Q 009756          391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL  470 (526)
Q Consensus       391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  470 (526)
                      |||+++++++|.+++.||.||+++.+|.++++.+||.++.++|+|.+++|++..++..++.+.++++..++....  ...
T Consensus       373 TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--~~~  450 (502)
T PRK08276        373 VGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAG--DAL  450 (502)
T ss_pred             ecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCC--hhh
Confidence            999999999999999999999999999999999999999999999999999999998899999999987654321  114


Q ss_pred             HHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          471 AEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       471 ~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      .+.+.+.++++++.+++|..+.+++ ||+|++||++|++|++.+.+..+
T Consensus       451 ~~~i~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~~  499 (502)
T PRK08276        451 AAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEGRQ  499 (502)
T ss_pred             HHHHHHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhhhh
Confidence            5689999999999999999999888 99999999999999999876544

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=5.4e-61  Score=493.50  Aligned_cols=459  Identities=20%  Similarity=0.211  Sum_probs=347.5

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCc--------cChHHHHHHHhh
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR--------LNATVVAFILSH   72 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~--------~~~~~l~~~l~~   72 (526)
                      |+||.++++++|++ |   .+.  ++||+|+|+++|++++++++|||+++|++++++ +.        ...+++.++++.
T Consensus        34 y~el~~~~~~lA~~-L---~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~l~~  106 (525)
T PRK05851         34 WPEVHGRAENVAAR-L---LDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAVSIL-PGPVRGADDGRWADATLTRFAG  106 (525)
T ss_pred             HHHHHHHHHHHHHH-H---Hhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCcCC-CCCCCccchhhHHHHHHHHHHh
Confidence            78999999999999 8   776  899999999999999999999999999987543 32        123455677899


Q ss_pred             cCceEEEEccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCC
Q 009756           73 ASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW  152 (526)
Q Consensus        73 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  152 (526)
                      ++++++|++++....+......              +.+.+.                  ...... ...... ....++
T Consensus       107 ~~~~~vi~~~~~~~~~~~~~~~--------------~~~~~~------------------~~~~~~-~~~~~~-~~~~~~  152 (525)
T PRK05851        107 IGVRTVLSHGSHLERLRAVDSS--------------VTVHDL------------------ATAAHT-NRSASL-TPPDSG  152 (525)
T ss_pred             cCCCEEEeCHHHHHHHHHhhcc--------------cccccc------------------cccccc-cccccC-CCCCCC
Confidence            9999999987755443322100              001000                  000000 000000 124678


Q ss_pred             CeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCc-CCcEEEEecccccchhhHHHHHHHhhcceeeeecc--c--
Q 009756          153 QSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMN-EGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ--V--  227 (526)
Q Consensus       153 ~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--~--  227 (526)
                      ++++|+|||||||.||+|+++|.++.+.+......+++. .+|++++..|++|.+++...+.+++.|+++++.+.  +  
T Consensus       153 d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~  232 (525)
T PRK05851        153 GPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSA  232 (525)
T ss_pred             CeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHH
Confidence            999999999999999999999999999888888888888 89999999999999999888888888888877652  3  


Q ss_pred             CHHHHHHHHHhcCceeeeccHHHHHHHHccCCC-CCCCCCCceeeEeccCCCCCHHHHHHHhh----cCC---eeecccc
Q 009756          228 TAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTAGAPPPPSLLFAMSQ----KGF---RITHTYG  299 (526)
Q Consensus       228 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~----~~~---~i~~~YG  299 (526)
                      ++..+++.++++++|++...|..+..+...... .... ++++|.+++||+++++++.+++.+    +|+   ++++.||
T Consensus       233 ~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~-l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG  311 (525)
T PRK05851        233 SPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVD-LGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYG  311 (525)
T ss_pred             CHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCC-HHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccc
Confidence            577899999999999886655555555443221 2233 789999999999999999988864    354   5999999


Q ss_pred             cccCCCCccccccCCCCC--CC--CcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccC
Q 009756          300 LTELTGPASVCAWKPEWD--SL--PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLK  375 (526)
Q Consensus       300 ~tE~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~  375 (526)
                      +||++..++.........  ..  +.........++|.|++++ +++|+|++++.+++.|  +.|||+++|++++.||++
T Consensus       312 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~-~v~i~d~~~~~~~~~g--~~GEl~v~g~~~~~GY~~  388 (525)
T PRK05851        312 LAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGM-EVRISPGDGAAGVAGR--EIGEIEIRGASMMSGYLG  388 (525)
T ss_pred             hhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCc-EEEEECCCCCccCCCC--CeEEEEEecCchhhcccc
Confidence            999976544321110000  00  0000112236789999999 6999998855667777  799999999999999999


Q ss_pred             ChhhhhhhhcCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEE
Q 009756          376 NPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF  455 (526)
Q Consensus       376 ~~~~~~~~~~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  455 (526)
                      ++..+    .+|||+|||+|+++ +|.++++||.||+||++|++|+|.+||.+|.++|.|.+++|++.+++..++.+.++
T Consensus       389 ~~~~~----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~  463 (525)
T PRK05851        389 QAPID----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLV  463 (525)
T ss_pred             CCccC----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEE
Confidence            87643    37899999999997 89999999999999999999999999999999999999999999888878777776


Q ss_pred             EEecCCCchhhhhhhHHHHHHHHHhcCCCc--cCCcEEEecc---ccCCCCccccHHHHHHHHHh
Q 009756          456 VTLKPEADELDKGKLAEDVSKFCRAKMPSY--WVPKSVVFAA---LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       456 v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~p~~~~~~~---lP~t~~GKv~r~~l~~~~~~  515 (526)
                      ++..... .     ..+.+.++++++++.+  ++|..+.+++   ||+|++||++|+.|++.+.+
T Consensus       464 v~~~~~~-~-----~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~~  522 (525)
T PRK05851        464 IAAEFRG-P-----DEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEA  522 (525)
T ss_pred             EEEEecC-c-----chHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcchHHHHHHHHHHHHh
Confidence            6544211 1     1233444555555544  8999888774   99999999999999998865

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=8.4e-61  Score=542.83  Aligned_cols=460  Identities=20%  Similarity=0.204  Sum_probs=381.0

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+++||+|++++++++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus       486 y~eL~~~~~~la~~-L---~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~  561 (1296)
T PRK10252        486 YREMREQVVALANL-L---RERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLIT  561 (1296)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+...    .        ...++....                     .+.....  .......++++++++||
T Consensus       562 ~~~~~~~~~~~----~--------~~~~~~~~~---------------------~~~~~~~--~~~~~~~~~~~a~i~~T  606 (1296)
T PRK10252        562 TADQLPRFADV----P--------DLTSLCYNA---------------------PLAPQGA--APLQLSQPHHTAYIIFT  606 (1296)
T ss_pred             CcchhhhcccC----C--------Cceeeeccc---------------------ccccccC--CCCCCCCCCCeEEEEEC
Confidence            88654432211    0        011111111                     0000000  01112367899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec---ccCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR---QVTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~i~  237 (526)
                      |||||.||||+++|+++.+.+.+....+++++++++++..|++|..++...+.++..|+++++.+   ..++..+++.++
T Consensus       607 SGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~  686 (1296)
T PRK10252        607 SGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFA  686 (1296)
T ss_pred             CCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHHHH
Confidence            99999999999999999999999888999999999999999999999888888888999888874   368899999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCC-CCCCceeeEeccCCCCCHHHHHHHhh-cCCeeecccccccCCCCccccccCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTI-LPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~-~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      ++++|++.++|+++..+++....... ..++++|.+++|||++++++.+.+.+ +++++++.||+||++..++.+.....
T Consensus       687 ~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~  766 (1296)
T PRK10252        687 EYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGE  766 (1296)
T ss_pred             HcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccc
Confidence            99999999999999998876433221 12688999999999999999999985 48999999999999876655432221


Q ss_pred             CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-------CCe
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-------NGW  388 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~g~  388 (526)
                      ..    ........++|.|+++. .++|+|+. +++++.|  +.|||+++|+.++.||+++++.+...|.       ++|
T Consensus       767 ~~----~~~~~~~~~iG~p~~~~-~~~i~d~~-~~~~~~g--~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~  838 (1296)
T PRK10252        767 EL----AAVRGSSVPIGYPVWNT-GLRILDAR-MRPVPPG--VAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERM  838 (1296)
T ss_pred             cc----cccCCCCCCcccccCCC-EEEEECCC-CCCCCCC--CceEEEecccccchhhCCCcccchhhcccCCCCCCCEE
Confidence            10    00011236789999999 69999976 9999988  8999999999999999999999998884       349


Q ss_pred             eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcC----CCCCC--ceeEEEEEecCCC
Q 009756          389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP----DERWG--ESPCAFVTLKPEA  462 (526)
Q Consensus       389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~----~~~~~--~~~~~~v~~~~~~  462 (526)
                      |+|||+|++++||.++++||.|++||++|.+|+|.+||.+|.++|+|.+++|+...    ....+  ..++++++...+.
T Consensus       839 y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~  918 (1296)
T PRK10252        839 YRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGL  918 (1296)
T ss_pred             EecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCC
Confidence            99999999999999999999999999999999999999999999999999877542    11112  3789999887654


Q ss_pred             chhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHH
Q 009756          463 DELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK  512 (526)
Q Consensus       463 ~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~  512 (526)
                      ..     ..++++++++++|+.|++|..+..++ ||+|++||++|++|++.
T Consensus       919 ~~-----~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~~  964 (1296)
T PRK10252        919 PL-----DTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPLP  964 (1296)
T ss_pred             CC-----CHHHHHHHHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCCC
Confidence            33     45789999999999999999999888 99999999999999764

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1.3e-59  Score=485.90  Aligned_cols=478  Identities=24%  Similarity=0.367  Sum_probs=378.4

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.||.++++++|++ |   .+.|+++||+|+++++|++++++++|||+++|++++|++|.++..++.++++.++++++|+
T Consensus        49 y~el~~~~~~~a~~-L---~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~  124 (541)
T TIGR03205        49 YTELEAMAETAAAA-L---LRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLIT  124 (541)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEE
Confidence            68999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccch--HHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhh---hhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeE
Q 009756           81 DQEF--FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQL---EYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI  155 (526)
Q Consensus        81 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a  155 (526)
                      ++..  .....+.... .       ....++.++.........   .........++.+++......... ....+++++
T Consensus       125 ~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  195 (541)
T TIGR03205       125 SDLAALLPMALKFLEK-G-------LLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEW-PAVTPDDVA  195 (541)
T ss_pred             eCchhhhHHHHHhhhc-c-------cceEEEEecccccccccccccccCCCcccccHHHHHhcCCCCCCC-CCCCccCeE
Confidence            8642  1111111111 0       123344433221100000   000112345566666543222111 224678999


Q ss_pred             EEEecCCCCCCccceeecchhHHHHHHhhHhHh------CCcCCcEEEEecccccchhhHHHHH-HHhhcceeeeecccC
Q 009756          156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIW------GMNEGAVFLWTLPMFHGNGWSYTWS-LAALCGTSICLRQVT  228 (526)
Q Consensus       156 ~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~------~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~g~~~~~~~~~~  228 (526)
                      +++|||||||.||+|.++|.++....... ..+      .....+++++..|++|.+++...+. ++..|++++.....+
T Consensus       196 ~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~  274 (541)
T TIGR03205       196 LLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFD  274 (541)
T ss_pred             EEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCC
Confidence            99999999999999999999987654322 221      1234478899999999888765444 455666666566688


Q ss_pred             HHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCc
Q 009756          229 AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPA  307 (526)
Q Consensus       229 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~  307 (526)
                      +..+++.|+++++|++.++|+++..|.+........ ++++|.+++||+++++++.+++. .++.++++.||+||++..+
T Consensus       275 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~  353 (541)
T TIGR03205       275 VAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRD-LSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPG  353 (541)
T ss_pred             HHHHHHHHHHcCCeEeechHHHHHHHHhCccccccC-ccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCccc
Confidence            999999999999999999999999998764333333 78999999999999999999887 4589999999999998766


Q ss_pred             cccccCCCCCCCCcccccccccccceeeeecCCceeec-CCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcC
Q 009756          308 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVID-ARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN  386 (526)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d-~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~  386 (526)
                      +.+....          .....++|.+++++ .++|++ .+++++++.+  +.|||+++|++++.||++++..+...|.+
T Consensus       354 ~~~~~~~----------~~~~~~~G~~~~~~-~~~v~~~d~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~  420 (541)
T TIGR03205       354 TGHPPEG----------PDKPGSIGLMLPGI-ELDVVSLDDPTKVLPPG--EVGELRIRGPNVTRGYWNRPEESAEAFVG  420 (541)
T ss_pred             ccCCCCC----------CCCCCCcceeccCc-eeEEEecCCCCccCCCC--CeeEEEEecCCccccccCChhhhHhhhcc
Confidence            5542211          11236789999998 588764 3447888877  79999999999999999999999999999


Q ss_pred             CeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhh
Q 009756          387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELD  466 (526)
Q Consensus       387 g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  466 (526)
                      +||+|||+++++++|++++.||.+|+|+++|.+++|.+||..+.+++.|.+++|++.+++..++.+++++++.++.... 
T Consensus       421 ~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-  499 (541)
T TIGR03205       421 DRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPF-  499 (541)
T ss_pred             CCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcC-
Confidence            9999999999999999999999999999999999999999999999999999999999888888999999987654321 


Q ss_pred             hhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHH
Q 009756          467 KGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLR  510 (526)
Q Consensus       467 ~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~  510 (526)
                         ..+++.++++++|+.+++|..+.+++ ||+|++||++|+.|+
T Consensus       500 ---~~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       500 ---SLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR  541 (541)
T ss_pred             ---CHHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence               45789999999999999999999988 999999999999874

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=4.5e-60  Score=485.89  Aligned_cols=463  Identities=22%  Similarity=0.277  Sum_probs=381.3

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.+++.++|++ |   .+.|+++|++|+++++|+.++++++|||+++|++++|+++.++.+++.++++..+++.+++
T Consensus        28 y~el~~~~~~~a~~-L---~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~  103 (502)
T TIGR01734        28 YQQLKEQSDRLAAF-I---QKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIH  103 (502)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEe
Confidence            78999999999999 9   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++......               ...++.+..                  ...+.....+ ........++++++++||
T Consensus       104 ~~~~~~~~~---------------~~~~~~~~~------------------~~~~~~~~~~-~~~~~~~~~~~~~~il~T  149 (502)
T TIGR01734       104 TAELSIDAV---------------GTQIITLSA------------------LEQAETSGGP-VSFDHAVKGDDNYYIIYT  149 (502)
T ss_pred             ccccccccc---------------CCceEEchH------------------hhhhhhhcCC-ccccccCCCCCeEEEEEC
Confidence            876432211               111222211                  1111111111 111122467889999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc---cCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~  237 (526)
                      |||||.||+|.++|.++.....+....++...+++++...|++|..++...+.++..|+++++.+.   .++..+++.++
T Consensus       150 SGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~  229 (502)
T TIGR01734       150 SGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELP  229 (502)
T ss_pred             CCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHH
Confidence            999999999999999999888887777888999999999999999998888888899999888754   57889999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCccccccCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      +++++.+.++|++++.+.......... +++++.++++|++++++..+.+.+ + ++++++.||+||+++.++......+
T Consensus       230 ~~~~~~~~~~p~~~~~~l~~~~~~~~~-~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  308 (502)
T TIGR01734       230 KTGLNVWVSTPSFVDMCLLDPNFNQEN-YPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQE  308 (502)
T ss_pred             HcCCeEEEEChhHHHHHHhcccccccc-CCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEcccc
Confidence            999999999999998877654333334 789999999999999999999874 4 8899999999999754443221111


Q ss_pred             CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc----CCeeec
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA----NGWFHS  391 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~g~~~t  391 (526)
                      .      .......++|.+.+++ +++|+|++ +.+++.+  +.|||+++|+.++.||+++++.+...|.    .+||+|
T Consensus       309 ~------~~~~~~~~vg~~~~~~-~~~i~~~~-~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~T  378 (502)
T TIGR01734       309 I------LDQYPRLPIGFAKPDM-NLFIMDEE-GEPLPEG--EKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRT  378 (502)
T ss_pred             c------cccCCccccccccCCC-EEEEECCC-CCCCCCC--CeeEEEEccccccccccCCcccchHhheeCCCcEEEEC
Confidence            0      0112235789999999 69999988 8888887  7999999999999999999998887763    359999


Q ss_pred             CceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcC-CCCCCceeEEEEEecCCCchhhhhhh
Q 009756          392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP-DERWGESPCAFVTLKPEADELDKGKL  470 (526)
Q Consensus       392 GD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~  470 (526)
                      ||+|+++++ ++++.||.+|+|+.+|++|+|.+||.++.++|.|.++++++.. ....++.++++++....... +....
T Consensus       379 GDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~  456 (502)
T TIGR01734       379 GDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFE-KEFQL  456 (502)
T ss_pred             CCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccc-cchhh
Confidence            999999966 9999999999999999999999999999999999999999865 44446788888887754322 11124


Q ss_pred             HHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHH
Q 009756          471 AEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK  514 (526)
Q Consensus       471 ~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~  514 (526)
                      .+++++.++++++.+.+|+.+++++ ||+|++||++|++|++++.
T Consensus       457 ~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       457 TKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN  501 (502)
T ss_pred             HHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence            4789999999999999999999998 9999999999999999864

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=5.1e-60  Score=476.81  Aligned_cols=434  Identities=24%  Similarity=0.358  Sum_probs=364.9

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|+. |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+.+.+++++++++++++
T Consensus         2 y~~l~~~~~~~a~~-l---~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   77 (436)
T TIGR01923         2 WQDLDCEAAHLAKA-L---KAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLT   77 (436)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      ++.....                 ....                     ..+..+................+++++++||
T Consensus        78 ~~~~~~~-----------------~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T  119 (436)
T TIGR01923        78 DSLLEEK-----------------DFQA---------------------DSLDRIEAAGRYETSLSASFNMDQIATLMFT  119 (436)
T ss_pred             cCccccc-----------------ceee---------------------cchHhhhhcccccccccccCCcCceEEEEeC
Confidence            8753210                 0000                     0011111111111111122456789999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG  240 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  240 (526)
                      |||||.||+|.++|.++...+......++++++++++...|++|.+++...+.++..|++++.....  ..+++.+++++
T Consensus       120 SGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~--~~~~~~l~~~~  197 (436)
T TIGR01923       120 SGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF--NQLLEMIANER  197 (436)
T ss_pred             CCCCCCCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH--HHHHHHHHHhC
Confidence            9999999999999999999888888888999999999999999999988777788888887777544  38999999999


Q ss_pred             ceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCCCCC
Q 009756          241 VTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLP  320 (526)
Q Consensus       241 ~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~  320 (526)
                      +|++.++|+++..|......     .+++|.++++|+++++++.+.+.+.++++++.||+||++...+......      
T Consensus       198 ~t~~~~~P~~l~~l~~~~~~-----~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~------  266 (436)
T TIGR01923       198 VTHISLVPTQLNRLLDEGGH-----NENLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEM------  266 (436)
T ss_pred             CeEEEeHHHHHHHHHhCcCC-----CCceEEEEECCCCCCHHHHHHHHHhCCceeeEecCCccchhccCcCccc------
Confidence            99999999999999887543     3689999999999999999998888999999999999987655432111      


Q ss_pred             cccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCC
Q 009756          321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD  400 (526)
Q Consensus       321 ~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~  400 (526)
                          .....++|.+++++ ++++.+.+.+        +.|||+++|+.++.||++++..+...+.+|||+|||++++++|
T Consensus       267 ----~~~~~~~G~~~~~~-~~~i~~~~~~--------~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~d  333 (436)
T TIGR01923       267 ----LHARPDVGRPLAGR-EIKIKVDNKE--------GHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGE  333 (436)
T ss_pred             ----cccccCCCccCCCc-EEEEEeCCCC--------CceEEEEECCccchhhCCChhhhhhhhcCCCeeccceEEEcCC
Confidence                01113489999988 5887433212        5799999999999999998888877778899999999999999


Q ss_pred             ceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHh
Q 009756          401 NYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA  480 (526)
Q Consensus       401 g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~  480 (526)
                      |.+++.||.+|++|++|+++++.+||.++.+++.|.+++|++.++...++.+.++++..++.       ..+++.+++++
T Consensus       334 g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-------~~~~l~~~l~~  406 (436)
T TIGR01923       334 GFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDI-------SQAKLIAYLTE  406 (436)
T ss_pred             CCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCCC-------CHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998887788889998887642       34788899999


Q ss_pred             cCCCccCCcEEEecc-ccCCCCccccHHHH
Q 009756          481 KMPSYWVPKSVVFAA-LPKSATGKIQKHLL  509 (526)
Q Consensus       481 ~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l  509 (526)
                      .++.+++|..+.+++ ||+|++||++|++|
T Consensus       407 ~l~~~~~p~~i~~~~~iP~t~~GK~~r~~L  436 (436)
T TIGR01923       407 KLAKYKVPIAFEKLDELPYNASGKILRNQL  436 (436)
T ss_pred             hhhCCCCCeEEEEecCCCCCCCCceecccC
Confidence            999999999999888 99999999999865

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5e-60  Score=499.69  Aligned_cols=482  Identities=17%  Similarity=0.212  Sum_probs=360.4

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .++|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus       124 y~el~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~  199 (700)
T PTZ00216        124 YAELWERIVNFGRG-L---AELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVC  199 (700)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCC---CcCCCCCCCCCCeEEE
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP---EFAWKPPEDEWQSIAL  157 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~a~i  157 (526)
                      +.+....+.+......     . ....++.+++.....    ........+|+++++.+..   ......+..++|++++
T Consensus       200 ~~~~~~~l~~~~~~~~-----~-~~~~ii~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i  269 (700)
T PTZ00216        200 NGKNVPNLLRLMKSGG-----M-PNTTIIYLDSLPASV----DTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALI  269 (700)
T ss_pred             CHHHHHHHHHhhhhcc-----C-CceEEEEECCCcccc----ccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEE
Confidence            8876554444333211     0 123566654421110    0112235678888766521   1111223468899999


Q ss_pred             EecCCCCCCccceeecchhHHHHHHhhHhHh-----CCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHH
Q 009756          158 GYTSGTTASPKGVVVSHRGAYLMSLNGALIW-----GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAV  232 (526)
Q Consensus       158 ~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  232 (526)
                      +|||||||.||||++||+++++.+......+     .+.+++++++++|++|.+++......+..|+ .+.+.  ++..+
T Consensus       270 iyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~-~v~~~--~~~~l  346 (700)
T PTZ00216        270 MYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGA-LIGFG--SPRTL  346 (700)
T ss_pred             EEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCC-EEEEC--CHHHh
Confidence            9999999999999999999988877655443     2467899999999999988765554444444 44442  44555


Q ss_pred             HH-------HHHhcCceeeeccHHHHHHHHccCCC-------------------------CCCC---------------C
Q 009756          233 YT-------AIATHGVTHFCAAPVVLNAIANASPE-------------------------DTIL---------------P  265 (526)
Q Consensus       233 ~~-------~i~~~~~t~l~~~P~~~~~l~~~~~~-------------------------~~~~---------------~  265 (526)
                      .+       .+++++||++.++|.+++.+.+....                         ....               .
T Consensus       347 ~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  426 (700)
T PTZ00216        347 TDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVL  426 (700)
T ss_pred             hhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHh
Confidence            44       68899999999999999887643110                         0000               0


Q ss_pred             CCceeeEeccCCCCCHHHHHHHhh-cCCeeecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceee
Q 009756          266 LTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVI  344 (526)
Q Consensus       266 l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~  344 (526)
                      .+++|.+++||+++++++.++++. .+ ++++.||+||+++.++.....           ....+++|.|++++ +++|+
T Consensus       427 g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~-----------~~~~~svG~p~~g~-evkI~  493 (700)
T PTZ00216        427 GGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTG-----------DLEPNAVGQLLKGV-EMKLL  493 (700)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCC-----------CCCCCCcCCcCCCe-EEEEe
Confidence            157999999999999999988874 46 999999999997655432111           11237899999999 69999


Q ss_pred             cCCCCC-ccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeecCceeEEcCCceEEEeccccceee-eCCeeec
Q 009756          345 DARTNQ-PVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVII-SGGENIS  421 (526)
Q Consensus       345 d~~~g~-~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~~~~~g~~~~~GR~~d~i~-~~G~~v~  421 (526)
                      |.++.. ..+.+  ..|||+++|++++.||+++++.+...|. +|||+|||+|++++||.++++||.||+|| .+|++|.
T Consensus       494 d~~~~~~~~~~~--~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~  571 (700)
T PTZ00216        494 DTEEYKHTDTPE--PRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIA  571 (700)
T ss_pred             echhhccCCCCC--CCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceec
Confidence            986322 22223  5799999999999999999999999994 89999999999999999999999999999 9999999


Q ss_pred             hHHHHHHHHcCCCeeee--EEEEcCCCCCCceeEEEEEecCCCc------------hh---hhhhhHHHHHH----HH-H
Q 009756          422 SVEVEKVLYLHPLVLEA--AVVARPDERWGESPCAFVTLKPEAD------------EL---DKGKLAEDVSK----FC-R  479 (526)
Q Consensus       422 ~~~ie~~l~~~~~v~~~--~v~~~~~~~~~~~~~~~v~~~~~~~------------~~---~~~~~~~~l~~----~l-~  479 (526)
                      |.+||.++.++|.|.++  +|+..+.   ...++|+|+++....            .+   +..+..+.+.+    .. +
T Consensus       572 p~eIE~~l~~~p~V~~~~~~v~~~~~---~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  648 (700)
T PTZ00216        572 LEALEALYGQNELVVPNGVCVLVHPA---RSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARA  648 (700)
T ss_pred             cHHHHHHHhcCcCcccceEEEEEecC---CceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            99999999999999973  3433332   235788887753210            00   00011222222    22 2


Q ss_pred             hcCCCccCCcEEEecc--c-c----CCCCccccHHHHHHHHHhcC
Q 009756          480 AKMPSYWVPKSVVFAA--L-P----KSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       480 ~~l~~~~~p~~~~~~~--l-P----~t~~GKv~r~~l~~~~~~~~  517 (526)
                      +.+..|..++.+.+..  + +    +|+++|+.|+.+++.|.+..
T Consensus       649 ~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i  693 (700)
T PTZ00216        649 AGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLI  693 (700)
T ss_pred             cCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHH
Confidence            3688888898888764  2 2    59999999999999998643

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.2e-59  Score=477.23  Aligned_cols=473  Identities=26%  Similarity=0.355  Sum_probs=387.4

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+++|++|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++.+++
T Consensus        27 y~~l~~~~~~la~~-L---~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~  102 (511)
T PRK13391         27 YRELDERSNRLAHL-F---RSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALIT  102 (511)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccccCHHHHHHHHhccCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++......+......       .....+.+.....         ......+.+.....+..    ...+.++.++++||
T Consensus       103 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~----~~~~~~~~a~il~T  162 (511)
T PRK13391        103 SAAKLDVARALLKQCP-------GVRHRLVLDGDGE---------LEGFVGYAEAVAGLPAT----PIADESLGTDMLYS  162 (511)
T ss_pred             chhhHHHHHHHHhcCC-------CceEEEEecCCCC---------CcccccHHHHhcCCCCC----CCCCcccccEEEEC
Confidence            9887766655544333       2334444432211         01223344433322111    11234567899999


Q ss_pred             CCCCCCccceeec--chhHHH---HHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHH
Q 009756          161 SGTTASPKGVVVS--HRGAYL---MSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTA  235 (526)
Q Consensus       161 SGsTG~pK~v~~t--~~~l~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  235 (526)
                      |||||.||+|.++  |.++..   ........+++..++++++..|++|..++...+..+..|+++++.+.+++..+++.
T Consensus       163 SGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  242 (511)
T PRK13391        163 SGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQYLAL  242 (511)
T ss_pred             CCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECCCCCHHHHHHH
Confidence            9999999999964  555432   22334455677889999999999999998888888889999988888899999999


Q ss_pred             HHhcCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHhh-cCCeeecccccccCCCCcccccc
Q 009756          236 IATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAW  312 (526)
Q Consensus       236 i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~  312 (526)
                      ++++++|++.++|+++..+.+....  ...+ ++++|.+++||+++++++.+.+.+ ++..+++.||+||++.++.....
T Consensus       243 i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~-~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~  321 (511)
T PRK13391        243 IEEYGVTHTQLVPTMFSRMLKLPEEVRDKYD-LSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSE  321 (511)
T ss_pred             HHHhCCeEEEehHHHHHHHHhCchhhcccCC-ccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCc
Confidence            9999999999999999988865432  2233 789999999999999999999984 58899999999999875443111


Q ss_pred             CCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc--CCeee
Q 009756          313 KPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA--NGWFH  390 (526)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~g~~~  390 (526)
                      .          .....+++|.|.++.  ++++|++ |.+++.|  +.|||+++|+ ++.||+++++.+...+.  ++||+
T Consensus       322 ~----------~~~~~~~vG~~~~g~--~~i~d~~-~~~~~~g--~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~  385 (511)
T PRK13391        322 E----------WLAHPGTVGRAMFGD--LHILDDD-GAELPPG--EPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWST  385 (511)
T ss_pred             c----------ccccCCCcCCcccce--EEEECCC-CCCCCCC--CceEEEEecC-cceEEcCChhHhHHhhccCCCEEe
Confidence            0          112236889999983  8999976 8888877  7899999999 88899999998888775  48999


Q ss_pred             cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhh
Q 009756          391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL  470 (526)
Q Consensus       391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  470 (526)
                      |||+++++++|.+++.||.+|+++++|.+++|.+||.++.++|.|.+++|++.++...++.++++++..++...  ....
T Consensus       386 TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~--~~~~  463 (511)
T PRK13391        386 VGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDP--GPAL  463 (511)
T ss_pred             cCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCc--ccch
Confidence            99999999999999999999999999999999999999999999999999999998888999999887764332  1114


Q ss_pred             HHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          471 AEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       471 ~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      .++++++++++++.+++|..+.+++ +|+|++||++|+.|++.+.+.
T Consensus       464 ~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~~  510 (511)
T PRK13391        464 AAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWGN  510 (511)
T ss_pred             HHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhcc
Confidence            5789999999999999999999888 999999999999999988753

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=2.7e-60  Score=582.03  Aligned_cols=459  Identities=21%  Similarity=0.246  Sum_probs=387.4

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||+++++++|++ |   .+.|+++|++|+|+++|++++++++|||+++|+++||++|.++.+++.++++.++++++++
T Consensus      2031 y~eL~~~a~~lA~~-L---~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~ 2106 (5163)
T PRK12316       2031 YAELDSRANRLAHR-L---RARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLT 2106 (5163)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEe
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+...            .....+.++..               ..    +.... .........++++++|+||
T Consensus      2107 ~~~~~~~~~~~------------~~~~~~~~~~~---------------~~----~~~~~-~~~~~~~~~~~~~a~ii~T 2154 (5163)
T PRK12316       2107 QRHLLERLPLP------------AGVARLPLDRD---------------AE----WADYP-DTAPAVQLAGENLAYVIYT 2154 (5163)
T ss_pred             Chhhhhhcccc------------cccceEeccch---------------hh----hhccC-ccCCCCCCCCCCeEEEEeC
Confidence            88654332110            01112222110               00    00011 1111123578899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec--ccCHHHHHHHHHh
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR--QVTAKAVYTAIAT  238 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~i~~  238 (526)
                      |||||.||||+++|.++.+.+.+....++++++++++...|++|..++...+.++..|+++++.+  .+++..+++.+++
T Consensus      2155 SGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~ 2234 (5163)
T PRK12316       2155 SGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMER 2234 (5163)
T ss_pred             ccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHH
Confidence            99999999999999999999998888899999999999999999988888888889999885554  3578999999999


Q ss_pred             cCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCccccccCCCC
Q 009756          239 HGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPEW  316 (526)
Q Consensus       239 ~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~  316 (526)
                      +++|++.++|+++..|.........  ..++|.+++|||+++++..++|.+ + +.++++.||+||++..++....... 
T Consensus      2235 ~~vt~~~~~P~~~~~l~~~~~~~~~--~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~- 2311 (5163)
T PRK12316       2235 HGVTILDFPPVYLQQLAEHAERDGR--PPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQ- 2311 (5163)
T ss_pred             cCCeEEEcChHHHHHHHhhhhcccC--CcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccc-
Confidence            9999999999999999876543332  458999999999999999999984 3 6889999999999876654332211 


Q ss_pred             CCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc--------CCe
Q 009756          317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA--------NGW  388 (526)
Q Consensus       317 ~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--------~g~  388 (526)
                           ........++|.|++++ +++|+|++ ++++|.|  +.|||+|+|++++.||+++++.+...|.        ++|
T Consensus      2312 -----~~~~~~~~~iG~p~~~~-~~~i~d~~-~~~vp~g--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~ 2382 (5163)
T PRK12316       2312 -----DPCGAAYVPIGRALGNR-RAYILDAD-LNLLAPG--MAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERL 2382 (5163)
T ss_pred             -----cccCCCcCCcccccCCC-EEEEECCC-CCCCCCC--CeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCee
Confidence                 00111125799999999 69999987 8999988  8999999999999999999999999983        359


Q ss_pred             eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756          389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG  468 (526)
Q Consensus       389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  468 (526)
                      |+|||+|++++||.++++||.||+||++|++|+|.|||.+|.++|+|.+++|++.++. .++.++++++..++...    
T Consensus      2383 yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~~~~~---- 2457 (5163)
T PRK12316       2383 YRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVVPDDAAED---- 2457 (5163)
T ss_pred             EecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEEEEEEecCCCcc----
Confidence            9999999999999999999999999999999999999999999999999999998766 57899999998766544    


Q ss_pred             hhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHH
Q 009756          469 KLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA  513 (526)
Q Consensus       469 ~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~  513 (526)
                       ..+++++++++.||.|++|..+++++ ||+|++||++|++|++..
T Consensus      2458 -~~~~l~~~l~~~Lp~~~vP~~~~~l~~lP~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316       2458 -LLAELRAWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred             -CHHHHHHHHHhhCchhcCcceEeeecccCCCCCCccCHhhcCCCc
Confidence             67899999999999999999999888 999999999999997654

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-58  Score=478.75  Aligned_cols=474  Identities=27%  Similarity=0.363  Sum_probs=383.5

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.||.++++++|++ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++++
T Consensus        31 y~el~~~~~~la~~-L---~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~  106 (533)
T PRK07798         31 YAELEERANRLAHY-L---IAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVY  106 (533)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+.++....+       ..+.++.+++.....      ...+..+++++++........  .....+.++++||
T Consensus       107 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~T  171 (533)
T PRK07798        107 EREFAPRVAEVLPRLP-------KLRTLVVVEDGSGND------LLPGAVDYEDALAAGSPERDF--GERSPDDLYLLYT  171 (533)
T ss_pred             chhhHHHHHHHhccCC-------CccEEEEecCCcccc------cCCccccHHHHHhccCCcCCC--CCCCCCceEEEEC
Confidence            9877666655543333       345666666542210      112355777777654332221  1223355789999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhH---------hCC------cCCcEEEEecccccchhhHHHHHHHhhcceeeeec
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALI---------WGM------NEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR  225 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~---------~~~------~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~  225 (526)
                      |||||.||+|+++|.++..........         +.+      ..+++++..+|++|..++...+.++..|+++++.+
T Consensus       172 SGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~~G~~~~~~~  251 (533)
T PRK07798        172 GGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLP  251 (533)
T ss_pred             CCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHHHHHHHhcCceEEEec
Confidence            999999999999999987654432221         111      56788999999999999988888889999998887


Q ss_pred             --ccCHHHHHHHHHhcCceeeeccHHHHHH-HHccCC-CCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccc
Q 009756          226 --QVTAKAVYTAIATHGVTHFCAAPVVLNA-IANASP-EDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYG  299 (526)
Q Consensus       226 --~~~~~~~~~~i~~~~~t~l~~~P~~~~~-l~~~~~-~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG  299 (526)
                        .+++..+++.++++++|.+.++|..+.. +..... ..... ++++|.+++||+++++++.+++.+ + +..+++.||
T Consensus       252 ~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~-~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG  330 (533)
T PRK07798        252 DVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYD-LSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIG  330 (533)
T ss_pred             CCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCC-CCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeec
Confidence              7889999999999999999999865533 333322 22333 789999999999999999999984 4 789999999


Q ss_pred             cccCCCCccccccCCCCCCCCcccccccccccc--eeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCCh
Q 009756          300 LTELTGPASVCAWKPEWDSLPFETQARLNARQG--VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP  377 (526)
Q Consensus       300 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~  377 (526)
                      +||++.+........             ....|  .+.++. .++|+|++ +++++.|....|+++. ++.++.||++++
T Consensus       331 ~tE~~~~~~~~~~~~-------------~~~~g~~~~~~~~-~~~i~~~~-~~~~~~g~~~~g~l~~-~~~~~~gy~~~~  394 (533)
T PRK07798        331 SSETGFGGSGTVAKG-------------AVHTGGPRFTIGP-RTVVLDED-GNPVEPGSGEIGWIAR-RGHIPLGYYKDP  394 (533)
T ss_pred             ccccccccccCCCCC-------------CccCCCCccCCCc-eEEEECCC-CCCCCCCCCCeeEEEe-ecCccccccCCh
Confidence            999965544321110             01222  566677 59999987 7788887422377765 567899999999


Q ss_pred             hhhhhhhc----CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeE
Q 009756          378 KANEEAFA----NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC  453 (526)
Q Consensus       378 ~~~~~~~~----~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~  453 (526)
                      ..+...|.    ++||+|||+++++++|.+++.||.+|+++.+|.+|+|.+||.++.+++.|.+++|++.++...++.+.
T Consensus       395 ~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~  474 (533)
T PRK07798        395 EKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVV  474 (533)
T ss_pred             hhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEE
Confidence            99988885    25999999999999999999999999999999999999999999999999999999999888888899


Q ss_pred             EEEEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          454 AFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       454 ~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                      +++++.++...     ..++++++++++|+.+++|..+++++ ||+|++||++|+.|+++..+
T Consensus       475 ~~v~~~~~~~~-----~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~~~~  532 (533)
T PRK07798        475 AVVQLREGARP-----DLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWAKEQAAE  532 (533)
T ss_pred             EEEEECCCCCC-----CHHHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHHHHhhhhcc
Confidence            99988765543     56889999999999999999999888 99999999999999999875

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-58  Score=479.81  Aligned_cols=483  Identities=24%  Similarity=0.348  Sum_probs=383.6

Q ss_pred             CccchhhhhhcccccccCcc-CCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPL-LFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~-~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.++++++|.+ |   + +.|+++|++|+++++|++++++++|||+++|++++|++|.++.+++.++++.+++++++
T Consensus        51 y~~l~~~~~~la~~-L---~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii  126 (560)
T PRK08974         51 FRKLEERSRAFAAY-L---QNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIV  126 (560)
T ss_pred             HHHHHHHHHHHHHH-H---HHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEE
Confidence            68999999999999 8   8 48999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCC--Cchh-------------hhhhhhcCcccHHHHHhhCCCCcC
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESC--DSKQ-------------LEYALARGAIEYEKFLETGDPEFA  144 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~l~~~~~~~~  144 (526)
                      ++++....+.++.....        ...++.......  ....             .+....+...++.+.+........
T Consensus       127 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (560)
T PRK08974        127 IVSNFAHTLEKVVFKTP--------VKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQY  198 (560)
T ss_pred             EeccccHHHHHHhhhcC--------cceEEEecccccccccccccccchhhhcccccccccCCCcccHHHHhhccCCCCC
Confidence            98876665555433211        222221111000  0000             000000112233333332221111


Q ss_pred             CCCCCCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhC---CcCCcEEEEecccccchhhHH-HHHHHhhcce
Q 009756          145 WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG---MNEGAVFLWTLPMFHGNGWSY-TWSLAALCGT  220 (526)
Q Consensus       145 ~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~  220 (526)
                      ......++++++++|||||||.||+|.++|.++..+.......+.   ...++.++..+|++|.+++.. .+..+..|++
T Consensus       199 ~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~  278 (560)
T PRK08974        199 VKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQ  278 (560)
T ss_pred             CCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCe
Confidence            112245789999999999999999999999998876654443332   234567788899999888654 4445556766


Q ss_pred             eeee-cccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-cCCeeeccc
Q 009756          221 SICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTY  298 (526)
Q Consensus       221 ~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~Y  298 (526)
                      .++. ...++..+++.++++++|++.++|+++..|.......... ++++|.+++||+++++.+.+.|.+ .|+++++.|
T Consensus       279 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~Y  357 (560)
T PRK08974        279 NLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELD-FSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGY  357 (560)
T ss_pred             EEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCC-ccceeEEEecCccCCHHHHHHHHHHhCCcEEeee
Confidence            6655 3467888999999999999999999999998876544444 789999999999999999999885 589999999


Q ss_pred             ccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChh
Q 009756          299 GLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPK  378 (526)
Q Consensus       299 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~  378 (526)
                      |+||++..++.+..+.          .....++|.|.+++ .++|+|++ +..++.|  +.|||+++|+.++.||++++.
T Consensus       358 G~tE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~i~~~~-~~~~~~g--~~Gel~v~g~~~~~gy~~~~~  423 (560)
T PRK08974        358 GLTECSPLVSVNPYDL----------DYYSGSIGLPVPST-EIKLVDDD-GNEVPPG--EPGELWVKGPQVMLGYWQRPE  423 (560)
T ss_pred             cccccCceeeccCCCC----------cccCCccccCcCCC-EEEEECCC-CCCCCCC--CceEEEEecCCcchhhcCChh
Confidence            9999987766553221          11236789999999 59999986 8888888  799999999999999999999


Q ss_pred             hhhhhhcCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEe
Q 009756          379 ANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTL  458 (526)
Q Consensus       379 ~~~~~~~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  458 (526)
                      .+...|.+|||+|||+++++++|.++++||.+|+|+++|.+++|.+||..|.++++|.+++|++.++...++.++++++.
T Consensus       424 ~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~  503 (560)
T PRK08974        424 ATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVK  503 (560)
T ss_pred             hhhhhhhcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEEC
Confidence            99888999999999999999999999999999999999999999999999999999999999999988888888888775


Q ss_pred             cCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          459 KPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       459 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      .+.. .     ..+++.+++.++++.+.+|..+.+++ ||+|++||++|+.|++.+.++
T Consensus       504 ~~~~-~-----~~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~  556 (560)
T PRK08974        504 KDPS-L-----TEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAK  556 (560)
T ss_pred             CCCC-C-----CHHHHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhh
Confidence            5322 2     34678899999999999999999888 999999999999999988764

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4.4e-60  Score=580.26  Aligned_cols=454  Identities=21%  Similarity=0.246  Sum_probs=386.3

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|+. |   ++.|+++|++|+|+++|++++++++|||+++|++++|++|.++.+++.++++.++++++|+
T Consensus       539 Y~eL~~~~~~lA~~-L---~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~  614 (5163)
T PRK12316        539 YAELNRRANRLAHA-L---IERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLS  614 (5163)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +......+..    .        ....++.++....                  .+.... .........++++++|+||
T Consensus       615 ~~~~~~~~~~----~--------~~~~~~~~~~~~~------------------~~~~~~-~~~~~~~~~~~~~a~ii~T  663 (5163)
T PRK12316        615 QSHLGRKLPL----A--------AGVQVLDLDRPAA------------------WLEGYS-EENPGTELNPENLAYVIYT  663 (5163)
T ss_pred             ChhhhhhCCc----c--------cCceEEEecCcch------------------hhccCC-CCCCCCCCCCCCeEEEEEC
Confidence            8765332210    0        1123333332110                  011111 1111123467899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec---ccCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR---QVTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~i~  237 (526)
                      |||||.||||+++|+++.+.+.+....++++++++++...|++|..++...+.++..|+++++.+   ..++..+++.++
T Consensus       664 SGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~  743 (5163)
T PRK12316        664 SGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELIN  743 (5163)
T ss_pred             CCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988888999999988874   378999999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCccccccCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      ++++|++.++|++++.|.+....  .. ++++|.+++|||++++++.+.+.+ + +++++|.||+||++..++...... 
T Consensus       744 ~~~vt~~~~~Ps~~~~l~~~~~~--~~-~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-  819 (5163)
T PRK12316        744 REGVDTLHFVPSMLQAFLQDEDV--AS-CTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVE-  819 (5163)
T ss_pred             HcCCeEEEeCHHHHHHHHhcccc--cc-CCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEeccc-
Confidence            99999999999999999875432  23 789999999999999999999963 3 789999999999986554432211 


Q ss_pred             CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-------CCe
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-------NGW  388 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~g~  388 (526)
                              ......++|.|++++ +++|+|++ ++++|.|  +.|||+|+|++++.||+++++.+...|.       ++|
T Consensus       820 --------~~~~~~~iG~p~~~~-~~~i~d~~-~~~~p~G--~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~  887 (5163)
T PRK12316        820 --------EGGDSVPIGRPIANL-ACYILDAN-LEPVPVG--VLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERM  887 (5163)
T ss_pred             --------ccCCCCCCccccCCC-EEEEECCC-CCCCCCC--CceEEEecccccChhhCCChhhhhhhCCCCCCCCCCee
Confidence                    112236799999999 69999987 8999988  8999999999999999999999998884       359


Q ss_pred             eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756          389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG  468 (526)
Q Consensus       389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  468 (526)
                      |+|||+|++++||.++++||.||+||++|++|+|.|||.+|.++|+|.+|+|++.+    ++.++++|+..++...    
T Consensus       888 y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~~----  959 (5163)
T PRK12316        888 YRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGD----  959 (5163)
T ss_pred             EecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCCC----
Confidence            99999999999999999999999999999999999999999999999999999986    5679999998765433    


Q ss_pred             hhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHH
Q 009756          469 KLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK  514 (526)
Q Consensus       469 ~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~  514 (526)
                       ..+.++++++++|+.|++|+.+++++ ||+|++||++|++|.+...
T Consensus       960 -~~~~l~~~l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316        960 -WREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred             -CHHHHHHHHHhhCCCccCCCeEEEHhhCCCCCCCChhHHhhcCccc
Confidence             56889999999999999999999998 9999999999999987543

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=6.1e-60  Score=570.45  Aligned_cols=464  Identities=23%  Similarity=0.273  Sum_probs=387.5

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+++|++|+|++++++++++++|||+++|++++|++|.++.+++.+++++++++++|+
T Consensus       540 Y~eL~~~a~~lA~~-L---~~~Gv~~g~~V~i~~~~s~~~vv~~lail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~  615 (3956)
T PRK12467        540 YAELNRQANRLAHV-L---IAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLT  615 (3956)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEe
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+.    . .       ....++.++....                  .+.... .........++++++|+||
T Consensus       616 ~~~~~~~~~----~-~-------~~~~~~~~~~~~~------------------~~~~~~-~~~~~~~~~~~~~a~iiyT  664 (3956)
T PRK12467        616 QSHLLAQLP----V-P-------AGLRSLCLDEPAD------------------LLCGYS-GHNPEVALDPDNLAYVIYT  664 (3956)
T ss_pred             chhhhhhcc----c-c-------cCccEEEeccccc------------------cccccC-CCCCCCCCCCCCeEEEEEC
Confidence            885432211    0 0       1122333322110                  011111 1111123567899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc---cCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~  237 (526)
                      |||||.||||+++|.++.+.+.+....+++.++++++...|++|..+....+.++..|+++++.+.   .++..+++.|+
T Consensus       665 SGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lv~~~~~~~~~~~~l~~~i~  744 (3956)
T PRK12467        665 SGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELFGALASGATLHLLPPDCARDAEAFAALMA  744 (3956)
T ss_pred             CCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHH
Confidence            999999999999999999999988888999999999999999999999888899999999888753   68999999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhc--CCeeecccccccCCCCccccccCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      ++++|++.++|+++..|.......  . ..++|.+++|||++++++.+.|.+.  +++++|.||+||++..++.......
T Consensus       745 ~~~vt~~~~~Ps~~~~l~~~~~~~--~-~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~  821 (3956)
T PRK12467        745 DQGVTVLKIVPSHLQALLQASRVA--L-PRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDE  821 (3956)
T ss_pred             HcCCeEEEcCHHHHHHHHhhhccc--c-CCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhheeeEecccc
Confidence            999999999999999998764322  2 4677999999999999999999854  6899999999999877665433211


Q ss_pred             CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc--------CC
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA--------NG  387 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--------~g  387 (526)
                      .       ......++|.|++++ +++|+|++ ++++|.|  +.|||+|+|++++.||+++++.+...|.        .+
T Consensus       822 ~-------~~~~~~~iG~p~~~~-~~~i~d~~-~~~vp~G--~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r  890 (3956)
T PRK12467        822 E-------RDFGNVPIGQPLANL-GLYILDHY-LNPVPVG--VVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGR  890 (3956)
T ss_pred             c-------ccCCCCcccCCcCCC-EEEEECCC-CCCCCCC--CceEEEecccccchhhcCCccccHhhCcCCCCCCCCce
Confidence            0       011125799999999 69999987 8999988  8999999999999999999999999883        23


Q ss_pred             eeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhh
Q 009756          388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDK  467 (526)
Q Consensus       388 ~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  467 (526)
                      ||+|||+|++++||.++++||.||+||++|.+|+|.+||..|.++|+|.+++|++.+.. .++.++++++..........
T Consensus       891 ~yrTGDl~~~~~dG~l~~~GR~d~~vki~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~-~~~~lva~vv~~~~~~~~~~  969 (3956)
T PRK12467        891 LYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPGD-AGLQLVAYLVPAAVADGAEH  969 (3956)
T ss_pred             eEecCceeEEcCCCcEEEeccccCeEEECCEecCHHHHHHHHHhCCCcceEEEEEEcCC-CCcEEEEEEEeccccccccc
Confidence            99999999999999999999999999999999999999999999999999999996654 36789999986543322222


Q ss_pred             hhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHH
Q 009756          468 GKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK  514 (526)
Q Consensus       468 ~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~  514 (526)
                      ....+++++++++.||.|++|..+++++ ||+|++||++|++|++...
T Consensus       970 ~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~ 1017 (3956)
T PRK12467        970 QATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNGKLDRKALPKPDA 1017 (3956)
T ss_pred             ccCHHHHHHHHHhhCchhcCCceEeeecccCCCCCCCcCHhhcCCccc
Confidence            2356889999999999999999999888 9999999999999987643

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.3e-59  Score=572.56  Aligned_cols=464  Identities=20%  Similarity=0.236  Sum_probs=388.3

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+++|++|+|++++++++++++||++++|++++||||.+|.+++.+++++++++++|+
T Consensus      3748 Y~eL~~~~~~la~~-L---~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~ 3823 (4334)
T PRK05691       3748 YAELNRAANRLGHA-L---RAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVC 3823 (4334)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEe
Confidence            88999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++...............     ..+.++..++..                     ..............++++|||+||
T Consensus      3824 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ayvi~T 3877 (4334)
T PRK05691       3824 SAACREQARALLDELGCA-----NRPRLLVWEEVQ---------------------AGEVASHNPGIYSGPDNLAYVIYT 3877 (4334)
T ss_pred             cCcccchhhhhhcccccc-----cccceeeecccc---------------------cccccccCCCCCCCCCceEEEEEC
Confidence            987655444433222100     112222222110                     001111111123567899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc---cCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~  237 (526)
                      |||||.||||+++|+++.+.+.+....++++++++++...++.+..+++..+.+++.|+++++.+.   .++..+++.++
T Consensus      3878 SGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~ 3957 (4334)
T PRK05691       3878 SGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQ 3957 (4334)
T ss_pred             CCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHH
Confidence            999999999999999999999988888999999999999999999999999999999999988753   57889999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhc--CCeeecccccccCCCCccccccCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      ++++|++.++|+++..+......   . +++||.+++|||++++++.+.|.+.  +++++|.||+||++..++.......
T Consensus      3958 ~~~vt~~~~~Ps~~~~l~~~~~~---~-~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~ 4033 (4334)
T PRK05691       3958 AQGITVLESVPSLIQGMLAEDRQ---A-LDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLA 4033 (4334)
T ss_pred             HcCCeEEEeCHHHHHHHHhhccc---c-CCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccc
Confidence            99999999999999988754322   2 7899999999999999999999743  8899999999999876654432211


Q ss_pred             CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc--------CC
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA--------NG  387 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--------~g  387 (526)
                      .       .......+|.|++++ .+.|+|.. ++++|.|  ..|||+|+|+.+++||+++++.+..+|.        ++
T Consensus      4034 ~-------~~~~~~~iG~p~~~~-~~~v~d~~-~~~~p~g--~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~ 4102 (4334)
T PRK05691       4034 S-------TRGSYLPIGSPTDNN-RLYLLDEA-LELVPLG--AVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGER 4102 (4334)
T ss_pred             c-------ccCCcCCCCCccCCC-EEEEECCC-CCCCCCC--CceEEEEecccccccccCCcccchhhcccCCCCCCCce
Confidence            0       111225699999999 69999977 9999998  8999999999999999999999999983        46


Q ss_pred             eeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhh
Q 009756          388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDK  467 (526)
Q Consensus       388 ~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  467 (526)
                      ||+|||++++++||.++++||.|++||++|.+|.+.|||..|.++|+|.+++|+.... ..++.++++++........  
T Consensus      4103 ~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~~-~~~~~l~a~~~~~~~~~~~-- 4179 (4334)
T PRK05691       4103 LYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEG-VNGKHLVGYLVPHQTVLAQ-- 4179 (4334)
T ss_pred             eeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEecC-CCCcEEEEEEeCCcccccc--
Confidence            9999999999999999999999999999999999999999999999999998876544 3467899999876554221  


Q ss_pred             hhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHH
Q 009756          468 GKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK  512 (526)
Q Consensus       468 ~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~  512 (526)
                      ....++++++++++||.|++|+.++.++ ||+|++||++|++|++.
T Consensus      4180 ~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4180 GALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred             hHHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCCC
Confidence            1256789999999999999999999888 99999999999999875

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=3.2e-59  Score=488.42  Aligned_cols=468  Identities=17%  Similarity=0.161  Sum_probs=358.0

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccC-----hHHHHHHHhhcCc
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN-----ATVVAFILSHASS   75 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~   75 (526)
                      |+||.++++++|++ |   .+.|+++||+|+++++|+++|++++|||+++|++++|+++.++     .+++.++++.+++
T Consensus        72 y~el~~~v~~~A~~-L---~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~  147 (614)
T PRK08180         72 YAEALERVRAIAQA-L---LDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTP  147 (614)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCC
Confidence            78999999999999 9   9999999999999999999999999999999999999999988     7899999999999


Q ss_pred             eEEEEccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCc--CCCCCCCCCC
Q 009756           76 AVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEF--AWKPPEDEWQ  153 (526)
Q Consensus        76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~  153 (526)
                      +++|+++...  +.........      ....++..+....         ..+..++.+++.......  .......++|
T Consensus       148 ~~li~~~~~~--~~~~~~~~~~------~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  210 (614)
T PRK08180        148 GLVFADDGAA--FARALAAVVP------ADVEVVAVRGAVP---------GRAATPFAALLATPPTAAVDAAHAAVGPDT  210 (614)
T ss_pred             cEEEEcCHHH--HHHHHhhhcc------CCceEEEecCCCC---------CcccccHHHHhccccccchhhhccCCCcCc
Confidence            9999976421  1111111110      1122333322110         012345666655422111  1111246789


Q ss_pred             eEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCc--CCcEEEEecccccchhhHHH-HHHHhhcceeeeec-ccC-
Q 009756          154 SIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMN--EGAVFLWTLPMFHGNGWSYT-WSLAALCGTSICLR-QVT-  228 (526)
Q Consensus       154 ~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~-~~~~~~g~~~~~~~-~~~-  228 (526)
                      +++|+|||||||.||+|++||+++.+........+...  .++++++.+|++|..++... +.++..|+++++.+ .++ 
T Consensus       211 ~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~  290 (614)
T PRK08180        211 IAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTP  290 (614)
T ss_pred             eEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccc
Confidence            99999999999999999999999988887776666653  56899999999999887544 45566677776654 233 


Q ss_pred             --HHHHHHHHHhcCceeeeccHHHHHHHHccCCCC----CCCCCCceeeEeccCCCCCHHHHHHHhh-----c--CCeee
Q 009756          229 --AKAVYTAIATHGVTHFCAAPVVLNAIANASPED----TILPLTNVVNVNTAGAPPPPSLLFAMSQ-----K--GFRIT  295 (526)
Q Consensus       229 --~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~----~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-----~--~~~i~  295 (526)
                        ...+++.++++++|+++++|.++..|.+.....    ... ++++|.+++||+++++++.+++.+     +  +++++
T Consensus       291 ~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~-~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~  369 (614)
T PRK08180        291 GGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRF-FSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMM  369 (614)
T ss_pred             hhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhh-ccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceee
Confidence              346788999999999999999999988753221    122 689999999999999999998874     2  37899


Q ss_pred             cccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccC
Q 009756          296 HTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLK  375 (526)
Q Consensus       296 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~  375 (526)
                      +.||+||++++++.....           ....+++|.|++++ +++++|+.          ..|||+++|++++.||++
T Consensus       370 ~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~-~v~i~d~~----------~~GEi~vrg~~v~~GY~~  427 (614)
T PRK08180        370 TGLGMTETAPSATFTTGP-----------LSRAGNIGLPAPGC-EVKLVPVG----------GKLEVRVKGPNVTPGYWR  427 (614)
T ss_pred             eeecccccCCceEecccc-----------cCCCCcccCccCCc-EEEEecCC----------CCcEEEEecCccchhhcC
Confidence            999999998765543211           11237899999999 69998853          469999999999999999


Q ss_pred             Chhhhhhhhc-CCeeecCceeEE----cCCceEEEeccccceee-eCCeeec--hHHHHHHHHcCCCeeeeEEEEcCCCC
Q 009756          376 NPKANEEAFA-NGWFHSGDLAVK----HPDNYIEIKDRLKDVII-SGGENIS--SVEVEKVLYLHPLVLEAAVVARPDER  447 (526)
Q Consensus       376 ~~~~~~~~~~-~g~~~tGD~~~~----~~~g~~~~~GR~~d~i~-~~G~~v~--~~~ie~~l~~~~~v~~~~v~~~~~~~  447 (526)
                      +++.+...|. +|||+|||+|++    ++||.+++.||.+|.|+ .+|++++  |.++|.++.+||.|.+++|++.+++.
T Consensus       428 ~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~~  507 (614)
T PRK08180        428 APELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRDE  507 (614)
T ss_pred             ChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCCc
Confidence            9999999885 899999999999    46899999999999888 6898776  77888999999999999999998765


Q ss_pred             CCceeEEEEEecCCCch----------hhhhhhHHHHHHHHHhcCCCcc--------CCcEEEecc-ccCC------CCc
Q 009756          448 WGESPCAFVTLKPEADE----------LDKGKLAEDVSKFCRAKMPSYW--------VPKSVVFAA-LPKS------ATG  502 (526)
Q Consensus       448 ~~~~~~~~v~~~~~~~~----------~~~~~~~~~l~~~l~~~l~~~~--------~p~~~~~~~-lP~t------~~G  502 (526)
                          +.++|++.++...          .+.....+++++++.+.|..++        +|+.+.+++ +|++      ++|
T Consensus       508 ----~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~  583 (614)
T PRK08180        508 ----IGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKG  583 (614)
T ss_pred             ----eEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccCccc
Confidence                7788887654210          0000123456666666655555        899999888 8875      566


Q ss_pred             cccHHHHHHHHHhc
Q 009756          503 KIQKHLLRAKAKEM  516 (526)
Q Consensus       503 Kv~r~~l~~~~~~~  516 (526)
                      |+.|+.+.+.|.+.
T Consensus       584 ~~~R~~~~~~y~~~  597 (614)
T PRK08180        584 YINQRAVLARRAAL  597 (614)
T ss_pred             cccHHHHHHHhHHH
Confidence            88999998888754

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=6.6e-59  Score=470.83  Aligned_cols=425  Identities=22%  Similarity=0.272  Sum_probs=359.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.||.++++++|++ |   .+.|+++||+|+++++|++++++++|||+++|++++|+++..+.+++..+++.++++++++
T Consensus        31 y~el~~~~~~~a~~-L---~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~  106 (458)
T PRK09029         31 WQQLCARIDQLAAG-F---AQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALV  106 (458)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEE
Confidence            68999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++... +..    ..          ... ..                         ....  .......++++++++||
T Consensus       107 ~~~~~~-~~~----~~----------~~~-~~-------------------------~~~~--~~~~~~~~~~~a~i~~T  143 (458)
T PRK09029        107 LEGENT-FSA----LT----------SLH-LQ-------------------------LVEG--AHAVAWQPQRLATMTLT  143 (458)
T ss_pred             cCcccc-hhh----cc----------ccc-cc-------------------------cccc--cCcccCCCCCeEEEEEC
Confidence            876422 100    00          000 00                         0000  00112457889999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG  240 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  240 (526)
                      |||||.||+|.+||++++..+......+++..+++++...|++|.+++...+..+..|+++++.+.   ..+++.+.  +
T Consensus       144 SGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~---~~~~~~i~--~  218 (458)
T PRK09029        144 SGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDK---QPLEQALA--G  218 (458)
T ss_pred             CCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCCh---HHHHHHHh--h
Confidence            999999999999999999998888888889999999999999999998766666777777766553   45667774  7


Q ss_pred             ceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCCCCC
Q 009756          241 VTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLP  320 (526)
Q Consensus       241 ~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~  320 (526)
                      +|.+..+|+++..+......     ..++|.+++||+++++.+.+.+.+.+.++++.||+||++...+....        
T Consensus       219 ~t~~~~~P~~~~~l~~~~~~-----~~~l~~i~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~--------  285 (458)
T PRK09029        219 CTHASLVPTQLWRLLDNRSE-----PLSLKAVLLGGAAIPVELTEQAEQQGIRCWCGYGLTEMASTVCAKRA--------  285 (458)
T ss_pred             ceeeecChHHHHHHHhcccc-----CCcceEEEECCCCCCHHHHHHHHHcCCcEeccccccccCcceeccCC--------
Confidence            89999999999998876543     34799999999999999999998889999999999999764433110        


Q ss_pred             cccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCC
Q 009756          321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD  400 (526)
Q Consensus       321 ~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~  400 (526)
                           ....++|.|++++ .+++++              |||+++|+.++.||++++..+.....+|||+|||+|+++ |
T Consensus       286 -----~~~~~~G~~~~~~-~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~  344 (458)
T PRK09029        286 -----DGLAGVGSPLPGR-EVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-N  344 (458)
T ss_pred             -----CCCCCCCCCCCCC-EEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-C
Confidence                 1124689999988 477754              899999999999999988877665668999999999999 9


Q ss_pred             ceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHh
Q 009756          401 NYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA  480 (526)
Q Consensus       401 g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~  480 (526)
                      |.+++.||.+|+|+++|.+|+|.+||.++.++|.|.+++|++.+++..++.++++++...+.       ..+++++++++
T Consensus       345 g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~-------~~~~l~~~~~~  417 (458)
T PRK09029        345 GELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEA-------AVVNLAEWLQD  417 (458)
T ss_pred             CEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCccc-------CHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999998899999999876332       45789999999


Q ss_pred             cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          481 KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       481 ~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      +|+.|++|..+.+++ +|+|.+||++|+.|++++.++..
T Consensus       418 ~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~~~  456 (458)
T PRK09029        418 KLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQLG  456 (458)
T ss_pred             hchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhccC
Confidence            999999999999888 99999999999999999986543

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=8.6e-59  Score=476.77  Aligned_cols=464  Identities=21%  Similarity=0.262  Sum_probs=382.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.+++.++|.+ |   .+.|+++|++|+++++|+.++++++|||+++|++++|+++.++.+++.++++..+++++++
T Consensus        30 ~~~l~~~~~~~a~~-l---~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (503)
T PRK04813         30 YGQLKEDSDALAAF-I---DSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIA  105 (503)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEe
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....       .        ....++..++                  +.+.... ...........++++++++||
T Consensus       106 ~~~~~~~-------~--------~~~~~~~~~~------------------~~~~~~~-~~~~~~~~~~~~~~~~~i~~T  151 (503)
T PRK04813        106 TEELPLE-------I--------LGIPVITLDE------------------LKDIFAT-GNPYDFDHAVKGDDNYYIIFT  151 (503)
T ss_pred             ccccccc-------c--------cCCcEEehHH------------------hhhhhhc-cccccccccCCCCCcEEEEEC
Confidence            8764100       0        0111111111                  1111110 111111122467889999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc---cCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~  237 (526)
                      |||||.||+|.++|+++..........+.+..+++++...|++|..++...+.++..|+++++.+.   .++..+++.++
T Consensus       152 SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~  231 (503)
T PRK04813        152 SGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANFKQLFETLP  231 (503)
T ss_pred             CCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHH
Confidence            999999999999999999888888888889999999999999999888877788888998888754   57899999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccccCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      +++++++..+|++++.+.......... ++++|.++++|+++++.+.+.+. .+ +.++++.||+||++..++.....++
T Consensus       232 ~~~~t~~~~~p~~~~~~~~~~~~~~~~-~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  310 (503)
T PRK04813        232 QLPINVWVSTPSFADMCLLDPSFNEEH-LPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDE  310 (503)
T ss_pred             HcCCeEEEeChHHHHHHHHhhccCccc-CCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEeccc
Confidence            999999999999998877654433344 78999999999999999999998 44 7899999999999765544322211


Q ss_pred             CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc--C--Ceeec
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA--N--GWFHS  391 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~--g~~~t  391 (526)
                      .      .......++|.+.++. +++|+|++ +.+++.+  +.|||+++|+.++.||++++..+...|.  +  +||+|
T Consensus       311 ~------~~~~~~~~~g~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~t  380 (503)
T PRK04813        311 M------LDQYKRLPIGYAKPDS-PLLIIDEE-GTKLPDG--EQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHT  380 (503)
T ss_pred             c------cccCCCCcccccCCCC-EEEEECCC-CCCCCCC--CceEEEEeccccccccCCChhHhHHhhccCCCceeEEC
Confidence            0      0112235789999999 59999976 8888887  7899999999999999999999888873  3  49999


Q ss_pred             CceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhH
Q 009756          392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLA  471 (526)
Q Consensus       392 GD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  471 (526)
                      ||++++ ++|++++.||.+|+|+.+|++++|.+||+.+.++|+|.+++|++.+....++.++++++..++.. +...+..
T Consensus       381 GD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~  458 (503)
T PRK04813        381 GDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDF-EREFELT  458 (503)
T ss_pred             CceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccc-cccchhH
Confidence            999999 89999999999999999999999999999999999999999999877766788999988776421 1122355


Q ss_pred             HHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          472 EDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       472 ~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                      ++++++++++++.+++|..+.+++ ||+|++||++|+.|++.+.+
T Consensus       459 ~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~  503 (503)
T PRK04813        459 KAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVNK  503 (503)
T ss_pred             HHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhcC
Confidence            789999999999999999999888 99999999999999988753

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=4.2e-58  Score=513.71  Aligned_cols=467  Identities=21%  Similarity=0.213  Sum_probs=372.7

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||+++++++|++ |   ++ |+++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+
T Consensus       661 y~el~~~~~~lA~~-L---~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~  735 (1140)
T PRK06814        661 YRKLLTGAFVLGRK-L---KK-NTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLT  735 (1140)
T ss_pred             HHHHHHHHHHHHHH-H---Hh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEe
Confidence            78999999999999 8   65 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHH--HHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEE
Q 009756           81 DQEFFSLA--EEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALG  158 (526)
Q Consensus        81 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~  158 (526)
                      +++.....  .+......       ....++.+++.....        .....+.+......+... .....++|+++++
T Consensus       736 ~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~  799 (1140)
T PRK06814        736 SRAFIEKARLGPLIEALE-------FGIRIIYLEDVRAQI--------GLADKIKGLLAGRFPLVY-FCNRDPDDPAVIL  799 (1140)
T ss_pred             cHHHHhhhcchhHHHHhc-------cCceEEEehHhhccC--------ChHHHHHHHhhccCCccc-cCCCCCCCcEEEE
Confidence            87654432  11222222       234555555321100        000011111111111111 1124678999999


Q ss_pred             ecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhH-HHHHHHhhcceeeeecc-cCHHHHHHHH
Q 009756          159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSICLRQ-VTAKAVYTAI  236 (526)
Q Consensus       159 ~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~~~~~i  236 (526)
                      |||||||.||+|.++|+++.+........++++++|++++.+|++|..++. ..+.++..|+++++.+. .+...+.+.+
T Consensus       800 ~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i  879 (1140)
T PRK06814        800 FTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELI  879 (1140)
T ss_pred             ECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHH
Confidence            999999999999999999998888888888999999999999999999984 44556666777766653 4667788999


Q ss_pred             HhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCC
Q 009756          237 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       237 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      +++++|++.++|++++.+.+...  ..+ ++++|.+++||+++++++.+.+. .+++++++.||+||++..++.....  
T Consensus       880 ~~~~~t~~~~~p~~l~~l~~~~~--~~~-~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~--  954 (1140)
T PRK06814        880 YDTNATILFGTDTFLNGYARYAH--PYD-FRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPM--  954 (1140)
T ss_pred             HhcCCEEEEecHHHHHHHHhhcc--ccc-ccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCC--
Confidence            99999999999999999887632  233 78999999999999999999987 5689999999999998765442211  


Q ss_pred             CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhh-hhhcCCeeecCce
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE-EAFANGWFHSGDL  394 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~-~~~~~g~~~tGD~  394 (526)
                               .....++|.|.+++ ++++++.+ +    .+  +.|||+++|++++.||++++.... ....+|||+|||+
T Consensus       955 ---------~~~~~~vG~p~~g~-~~~~~~~~-~----~~--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl 1017 (1140)
T PRK06814        955 ---------HNKAGTVGRLLPGI-EYRLEPVP-G----ID--EGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDI 1017 (1140)
T ss_pred             ---------CCCCCcCCccCCCC-eEEEeecC-C----CC--CceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCE
Confidence                     11236899999999 58887654 2    12  679999999999999998764332 2235899999999


Q ss_pred             eEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHH
Q 009756          395 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDV  474 (526)
Q Consensus       395 ~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l  474 (526)
                      +++++||++++.||.||+||.+|++|+|.+||+++.+++.+.+++|++.+++..++.+++++. ..+  .     ..+++
T Consensus      1018 ~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~-~~~--~-----~~~~l 1089 (1140)
T PRK06814       1018 VTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT-ASD--A-----TRAAF 1089 (1140)
T ss_pred             EEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc-CCC--c-----CHHHH
Confidence            999999999999999999999999999999999999999999999999999888888877654 221  1     34678


Q ss_pred             HHHHHh-cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          475 SKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       475 ~~~l~~-~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      .+++++ .++.+++|..+.+++ +|+|++||++|++|+++..+...
T Consensus      1090 ~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 1135 (1140)
T PRK06814       1090 LAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAAA 1135 (1140)
T ss_pred             HHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhhc
Confidence            888886 499999999999888 99999999999999999876544

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.7e-59  Score=436.60  Aligned_cols=490  Identities=20%  Similarity=0.250  Sum_probs=403.3

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCE-EEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDL-VSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~-V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |.|+..++.++|++ |   .+.|++++++ ++|+++.+.+|+++++||++.+..+|.+...+..+.+.|-|++++++.+|
T Consensus        92 y~ev~~~~~~~gsG-L---~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~  167 (678)
T KOG1180|consen   92 YNEVYERVHNFGSG-L---VKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIF  167 (678)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEE
Confidence            67899999999999 9   9999998777 99999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCc--hhhhhh--hhcCcccHHHHHhhCCCCcCCCCCCCCCCeE
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDS--KQLEYA--LARGAIEYEKFLETGDPEFAWKPPEDEWQSI  155 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a  155 (526)
                      |+.+..+.+...++...       .++++|.+++.....  +++...  ....+.+|+++++.+.+...+..+..++|+|
T Consensus       168 T~~~LL~kl~~~l~~~~-------~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia  240 (678)
T KOG1180|consen  168 TDSELLPKLKAPLKQAK-------TVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIA  240 (678)
T ss_pred             eCHHHHHHHHHHHhccC-------ceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceE
Confidence            99999998887777777       789999998643222  222221  2345789999999988775555556889999


Q ss_pred             EEEecCCCCCCccceeecchhHHHHHHhhHhHh-CCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHH-
Q 009756          156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIW-GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVY-  233 (526)
Q Consensus       156 ~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-  233 (526)
                      +|+|||||||.||||+++|+|+++......... .+++.|+++.++|+.|...+.+-+.++..|+.+-+-+..+...-. 
T Consensus       241 ~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~  320 (678)
T KOG1180|consen  241 CIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSS  320 (678)
T ss_pred             EEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccch
Confidence            999999999999999999999999988877655 688999999999999999999999999999988776443221111 


Q ss_pred             -------HHHHhcCceeeeccHHHHHHHHccCCC--------------------------CCCC---------------C
Q 009756          234 -------TAIATHGVTHFCAAPVVLNAIANASPE--------------------------DTIL---------------P  265 (526)
Q Consensus       234 -------~~i~~~~~t~l~~~P~~~~~l~~~~~~--------------------------~~~~---------------~  265 (526)
                             -.+..+|||++.++|..++++.+.-..                          ....               .
T Consensus       321 ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~l  400 (678)
T KOG1180|consen  321 KIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALL  400 (678)
T ss_pred             hhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHh
Confidence                   235678999999999999887643100                          0000               0


Q ss_pred             CCceeeEeccCCCCCHHHHHHHhhc-CCeeecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceee
Q 009756          266 LTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVI  344 (526)
Q Consensus       266 l~~lr~~~~~Ge~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~  344 (526)
                      -.+||.+++||.+++++..+++.-+ .|++.++||.||+++.++....           .....+.+|.|++.. ++.++
T Consensus       401 GG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~-----------~d~~~g~vG~pl~c~-eiKLv  468 (678)
T KOG1180|consen  401 GGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEP-----------EDFSTGRVGAPLPCC-EIKLV  468 (678)
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecCh-----------hhcccccccCCccce-EEEEE
Confidence            3489999999999999999999854 6799999999999987776432           223337899999999 69999


Q ss_pred             cCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc--CC--eeecCceeEEcCCceEEEeccccceee-eCCee
Q 009756          345 DARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA--NG--WFHSGDLAVKHPDNYIEIKDRLKDVII-SGGEN  419 (526)
Q Consensus       345 d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~g--~~~tGD~~~~~~~g~~~~~GR~~d~i~-~~G~~  419 (526)
                      |-+.|.-.+.+....||||++|++++.||+++++.+.+.|.  +|  ||+|||+|++.+||++.+.+|.+|.+| .+|+.
T Consensus       469 dw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEY  548 (678)
T KOG1180|consen  469 DWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEY  548 (678)
T ss_pred             EhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccce
Confidence            98888777766556899999999999999999999999994  78  999999999999999999999999999 89999


Q ss_pred             echHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCch---------h-----------hhhhhHHHHHHHH-
Q 009756          420 ISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE---------L-----------DKGKLAEDVSKFC-  478 (526)
Q Consensus       420 v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---------~-----------~~~~~~~~l~~~l-  478 (526)
                      |+++.||.+++..|.|...+|.+.....   .++++|++++..-.         .           -..+..++|.+.- 
T Consensus       549 IsL~KvEa~l~s~p~V~NICvyAd~~~s---~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak  625 (678)
T KOG1180|consen  549 ISLGKVEAALRSSPYVDNICVYADSNKS---KPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAK  625 (678)
T ss_pred             eehHHHHHHHhcCcchhheEEecccccc---eeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887765   68899998865311         0           0011223333333 


Q ss_pred             HhcCCCccCCcEEEeccccC-------CCCccccHHHHHHHHHhc
Q 009756          479 RAKMPSYWVPKSVVFAALPK-------SATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       479 ~~~l~~~~~p~~~~~~~lP~-------t~~GKv~r~~l~~~~~~~  516 (526)
                      ..+|..+.+|..|++.+.|=       |..-|+.|+.++..|.+.
T Consensus       626 ~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~e  670 (678)
T KOG1180|consen  626 SQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKE  670 (678)
T ss_pred             hcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHH
Confidence            34789999999999887554       456799999999888754

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.1e-58  Score=564.59  Aligned_cols=454  Identities=19%  Similarity=0.229  Sum_probs=383.9

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++|++|++++++++++++++||++++|++++|++|.++.+++.++++.++++++|+
T Consensus      1159 Y~eL~~~~~~lA~~-L---~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~ 1234 (4334)
T PRK05691       1159 YAELHAQANRLAHY-L---RDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLT 1234 (4334)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEe
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+...    .        ....+.++....                     .............++++++++||
T Consensus      1235 ~~~~~~~~~~~----~--------~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~a~ii~T 1281 (4334)
T PRK05691       1235 QSHLLERLPQA----E--------GVSAIALDSLHL---------------------DSWPSQAPGLHLHGDNLAYVIYT 1281 (4334)
T ss_pred             cchhhhhcccc----c--------CceEEeeccccc---------------------cccCCCCCCCCCCCCCeEEEEEc
Confidence            88654332111    0        111222221100                     00000111112467899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec---ccCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR---QVTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~i~  237 (526)
                      |||||.||||.++|+++.+.+.+....++++++++++...|++|..++...+.++..|+++++.+   ..++..+++.++
T Consensus      1282 SGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~ 1361 (4334)
T PRK05691       1282 SGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQ 1361 (4334)
T ss_pred             CCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHH
Confidence            99999999999999999999988888899999999999999999988888888889999988874   368899999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhc--CCeeecccccccCCCCccccccCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      ++++|++.++|++++.|......  .. ++++|.+++|||++++++.++|.+.  +++++|.||+||++..++...... 
T Consensus      1362 ~~~vt~~~~~Ps~l~~l~~~~~~--~~-~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~- 1437 (4334)
T PRK05691       1362 QYGVTTLHFVPPLLQLFIDEPLA--AA-CTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQA- 1437 (4334)
T ss_pred             HcCCeEEECcHHHHHHHHhCccc--cc-CCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeeccc-
Confidence            99999999999999999875432  23 7899999999999999999999843  789999999999986655432111 


Q ss_pred             CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcC--------C
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN--------G  387 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------g  387 (526)
                              ......++|.|++++ .++|+|++ ++++|.|  +.|||+|+|++++.||+++++.+...|..        +
T Consensus      1438 --------~~~~~~~iG~p~~~~-~~~i~d~~-~~~vp~G--~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r 1505 (4334)
T PRK05691       1438 --------EDGERSPIGRPLGNV-LCRVLDAE-LNLLPPG--VAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGAR 1505 (4334)
T ss_pred             --------ccCCCCcccceeCCC-EEEEECCC-CCCCCCC--CceEEEecCcccchhhcCCccccHhhCCCCCCCCCCce
Confidence                    011235799999999 69999987 8999988  89999999999999999999999998842        4


Q ss_pred             eeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhh
Q 009756          388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDK  467 (526)
Q Consensus       388 ~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  467 (526)
                      ||+|||+|++++||.++++||.|++||++|.+|+|.+||.+|.++|+|.+++|+...... ++.++++++...+...   
T Consensus      1506 ~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~-~~~lva~~~~~~~~~~--- 1581 (4334)
T PRK05691       1506 LYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGAA-GAQLVGYYTGEAGQEA--- 1581 (4334)
T ss_pred             EEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCCC-CCEEEEEEEeCCCCCC---
Confidence            999999999999999999999999999999999999999999999999999998766554 5789999887765443   


Q ss_pred             hhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHH
Q 009756          468 GKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA  513 (526)
Q Consensus       468 ~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~  513 (526)
                        ..++++++++++||.|++|+.+++++ ||+|++||++|+.|++..
T Consensus      1582 --~~~~l~~~l~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~~ 1626 (4334)
T PRK05691       1582 --EAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEPV 1626 (4334)
T ss_pred             --CHHHHHHHHHHhCccccCCcEEEEccccCCCCCCCcChhhcCccc
Confidence              45789999999999999999999888 999999999999997643

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.9e-57  Score=490.31  Aligned_cols=460  Identities=17%  Similarity=0.142  Sum_probs=350.6

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+|+++|++++++++|||+++|++++|++|.   .++.++++.++++++|+
T Consensus       475 Y~eL~~ra~rlA~~-L---~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~  547 (994)
T PRK07868        475 YEAVNRRINNVVRG-L---IAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIIT  547 (994)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEE
Confidence            78999999999999 9   99999999999999999999999999999999999999985   67899999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcC--CCCCCCCCCeEEEE
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFA--WKPPEDEWQSIALG  158 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~a~i~  158 (526)
                      +++....+.+.             ...++.++......  ..........+++++.........  ...+..++++++|+
T Consensus       548 ~~~~~~~~~~~-------------~~~iiv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~Ii  612 (994)
T PRK07868        548 DPTNLEAARQL-------------PGRVLVLGGGESRD--LDLPDDADVIDMEKIDPDAVELPGWYRPNPGLARDLAFIA  612 (994)
T ss_pred             ChHHHHHHHhc-------------CceEEEecCCcccc--ccCCcchhhhhhhhcCcccccCCcccCCCCCCCCccEEEE
Confidence            87655433221             24455554321100  000000011112211111000000  00112368999999


Q ss_pred             ecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-cccCHHHHHHHHH
Q 009756          159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIA  237 (526)
Q Consensus       159 ~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~  237 (526)
                      || ||||.||++.++|.+...........+++..+|++++..|++|..++...+..++.+|+.+++ ..+++..+++.|+
T Consensus       613 yT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~  691 (994)
T PRK07868        613 FS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVR  691 (994)
T ss_pred             Ee-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHH
Confidence            98 578888888888876655544455567888999999999999999998777777777776665 5689999999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-cC-CeeecccccccCCCCccccccCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KG-FRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~-~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      ++++|+++++|+++..|.......... ++++|.++  |+.+++++.+++.+ ++ +++++.||+||++...+..   . 
T Consensus       692 ~~~vT~~~~~Ps~l~~L~~~~~~~~~~-~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~---~-  764 (994)
T PRK07868        692 QYGVTVVSYTWAMLREVVDDPAFVLHG-NHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV---S-  764 (994)
T ss_pred             HhCCcEEEeHHHHHHHHHhCcCCccCC-CCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccccc---C-
Confidence            999999999999999998865433333 67899876  34499999999884 44 7899999999986543211   0 


Q ss_pred             CCCCCcccccccccccceeeeecCCceee-----------cCCCC--CccCCCCCceEEEEEcCccccccccCChhhhh-
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVI-----------DARTN--QPVPADGKTIGEIVMRGSCVMKGYLKNPKANE-  381 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~-----------d~~~g--~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~-  381 (526)
                               ....+++|+|++++.+++|.           |.+ |  +.++.|  +.|||+++++..    + ++..+. 
T Consensus       765 ---------~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~-G~~~~~~~g--e~Gel~~~~~~~----~-~p~~t~~  827 (994)
T PRK07868        765 ---------GAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDR-GFVRRAEVN--EVGVLLARARGP----I-DPTASVK  827 (994)
T ss_pred             ---------CCCCcccCCccCCCCceeEEEecCcCCceeecCC-ceEEEcCCC--CceEEEEecCCC----C-ChhhhhH
Confidence                     01236899999997435543           332 5  445555  799999998753    2 233221 


Q ss_pred             -hhhc--CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEe
Q 009756          382 -EAFA--NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTL  458 (526)
Q Consensus       382 -~~~~--~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  458 (526)
                       ..|.  +|||+|||+|++++||+++++||.||+||++|.+|+|.+||.+|.+||.|.+|+|++.+++. ++.++++|++
T Consensus       828 ~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~  906 (994)
T PRK07868        828 RGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTL  906 (994)
T ss_pred             hcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEe
Confidence             1232  78999999999999999999999999999999999999999999999999999999998875 6789999998


Q ss_pred             cCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHH
Q 009756          459 KPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK  514 (526)
Q Consensus       459 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~  514 (526)
                      +++...     ..++|++++++ ++.|++|+.+++++ ||+|++||++|++|++...
T Consensus       907 ~~~~~~-----~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~l  957 (994)
T PRK07868        907 RPGAAI-----TAADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGI  957 (994)
T ss_pred             CCCCcC-----CHHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcCC
Confidence            876543     45789999986 89999999999998 9999999999999987654

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-57  Score=472.20  Aligned_cols=471  Identities=21%  Similarity=0.263  Sum_probs=361.9

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccC-------hHHHHHHHhhc
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN-------ATVVAFILSHA   73 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~   73 (526)
                      |.||+.++.++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++..+       .+++.++++.+
T Consensus        52 y~eL~~~~~~~a~~-L---~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~  127 (579)
T PRK09192         52 YQTLRARAEAGARR-L---LALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASA  127 (579)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhc
Confidence            78999999999999 9   9999999999999999999999999999999999999986443       57899999999


Q ss_pred             CceEEEEccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCC
Q 009756           74 SSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQ  153 (526)
Q Consensus        74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  153 (526)
                      +++++|++++....+.+......        ...+.                     ++.++........ ......+++
T Consensus       128 ~~~~il~~~~~~~~~~~~~~~~~--------~~~~~---------------------~~~~~~~~~~~~~-~~~~~~~~~  177 (579)
T PRK09192        128 QPAAIITPDELLPWVNEATHGNP--------LLHVL---------------------SHAWFKALPEADV-ALPRPTPDD  177 (579)
T ss_pred             CCCEEEeChHHHHHHHHhhcccc--------cccee---------------------ehhhhcccCCCcc-ccCCCCCCC
Confidence            99999999877665554321111        11111                     1122211111111 111245688


Q ss_pred             eEEEEecCCCCCCccceeecchhHHHHHHhhHh-HhCCcCCcEEEEecccccchhhHHHHHH-Hhhcceeeeecc----c
Q 009756          154 SIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL-IWGMNEGAVFLWTLPMFHGNGWSYTWSL-AALCGTSICLRQ----V  227 (526)
Q Consensus       154 ~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~g~~~~~~~~----~  227 (526)
                      +++++|||||||.||+|.++|.+++........ .+++.++++++..+|++|..++...+.. +..|+++.+...    .
T Consensus       178 ~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~  257 (579)
T PRK09192        178 IAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFAR  257 (579)
T ss_pred             eEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHH
Confidence            999999999999999999999999988877776 7889999999999999999998765554 455555544432    3


Q ss_pred             CHHHHHHHHHhcCceeeeccHHHHHHHHccCCC---CCCCCCCceeeEeccCCCCCHHHHHHHhhc----C---Ceeecc
Q 009756          228 TAKAVYTAIATHGVTHFCAAPVVLNAIANASPE---DTILPLTNVVNVNTAGAPPPPSLLFAMSQK----G---FRITHT  297 (526)
Q Consensus       228 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~---~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~----~---~~i~~~  297 (526)
                      ++..+++.+.++++++++..|..+..+......   .... ++++|.+++||+++++++.+.+.+.    +   ..+++.
T Consensus       258 ~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~-l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~  336 (579)
T PRK09192        258 RPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELD-LSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPS  336 (579)
T ss_pred             CHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccc-hhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccc
Confidence            678899999999999887766655555433211   2233 7899999999999999999888743    2   248999


Q ss_pred             cccccCCCCccccccCCCCC---------------CCC--cccccccccccceeeeecCCceeecCCCCCccCCCCCceE
Q 009756          298 YGLTELTGPASVCAWKPEWD---------------SLP--FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIG  360 (526)
Q Consensus       298 YG~tE~~~~~~~~~~~~~~~---------------~~~--~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~G  360 (526)
                      ||+||+++.++.........               ..+  .........++|.+.+++ .++|+|++ +..++.+  +.|
T Consensus       337 yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~-~v~i~d~~-~~~~~~g--~~G  412 (579)
T PRK09192        337 YGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGH-EIEIRNEA-GMPLPER--VVG  412 (579)
T ss_pred             cccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCc-EEEEECCC-CCCCCCC--CEE
Confidence            99999976554432211000               000  000001124789999999 69999976 8888877  799


Q ss_pred             EEEEcCccccccccCChhhhhhhh-cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCee--e
Q 009756          361 EIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL--E  437 (526)
Q Consensus       361 el~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~--~  437 (526)
                      ||+++|+.++.||+++ ..+...+ .+|||+|||+|++ ++|+++++||.||+|+++|++|+|.+||++|+++|+|.  +
T Consensus       413 el~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~  490 (579)
T PRK09192        413 HICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGD  490 (579)
T ss_pred             EEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCc
Confidence            9999999999999999 4444444 5889999999999 89999999999999999999999999999999999998  8


Q ss_pred             eEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHhcCC-CccCCcEEEec--c-ccCCCCccccHHHHHHHH
Q 009756          438 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP-SYWVPKSVVFA--A-LPKSATGKIQKHLLRAKA  513 (526)
Q Consensus       438 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~p~~~~~~--~-lP~t~~GKv~r~~l~~~~  513 (526)
                      ++|++.+++. ++.++++++..++...     ..+++.+++++.+. .+++|..+.++  + ||+|++||++|++|++++
T Consensus       491 ~~v~~~~~~~-~~~~~~~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~  564 (579)
T PRK09192        491 AAAFSIAQEN-GEKIVLLVQCRISDEE-----RRGQLIHALAALVRSEFGVEAAVELVPPHSLPRTSSGKLSRAKAKKRY  564 (579)
T ss_pred             EEEEEeccCC-CeeEEEEEEecCCChH-----HHHHHHHHHHHHHHHHhCCCceEEEeCCCCcCCCCCcchhHHHHHHHH
Confidence            9999998876 5578888776654332     45677778877764 57788776655  3 999999999999999999


Q ss_pred             HhcCC
Q 009756          514 KEMGP  518 (526)
Q Consensus       514 ~~~~~  518 (526)
                      .+...
T Consensus       565 ~~~~~  569 (579)
T PRK09192        565 LSGAF  569 (579)
T ss_pred             HcCCC
Confidence            87655

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-56  Score=467.95  Aligned_cols=478  Identities=20%  Similarity=0.243  Sum_probs=348.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccC---ccChHHHHHHHhhcCceE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINI---RLNATVVAFILSHASSAV   77 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~   77 (526)
                      |+||.+++.++|++ |   +++| .+||+|+++++|++++++++|||+++|++++|+++   ..+.+++.++++.+++++
T Consensus        38 y~eL~~~v~~~A~~-L---~~~g-~~gd~V~l~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~  112 (578)
T PRK05850         38 WSQLYRRTLNVAEE-L---RRHG-STGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSV  112 (578)
T ss_pred             HHHHHHHHHHHHHH-H---HHhC-CCCCEEEEEcCCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCE
Confidence            78999999999999 9   8889 68999999999999999999999999999999997   457789999999999999


Q ss_pred             EEEccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEE
Q 009756           78 VIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIAL  157 (526)
Q Consensus        78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i  157 (526)
                      ++++++....+.+........     ....++.++....                   .....   .......+++++++
T Consensus       113 il~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------------------~~~~~---~~~~~~~~~d~a~i  165 (578)
T PRK05850        113 VLTTSAVVDDVTEYVAPQPGQ-----SAPPVIEVDLLDL-------------------DSPRG---SDARPRDLPSTAYL  165 (578)
T ss_pred             EEEcHHHHHHHHHHHhhcccc-----cccceEeeccccc-------------------ccCCc---cccCCCCCCCeEEE
Confidence            999988766655433221100     1222333221100                   00000   01112456899999


Q ss_pred             EecCCCCCCccceeecchhHHHHHHhhHhHh-C-----CcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecc----
Q 009756          158 GYTSGTTASPKGVVVSHRGAYLMSLNGALIW-G-----MNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQ----  226 (526)
Q Consensus       158 ~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~-~-----~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~----  226 (526)
                      +|||||||.||+|.++|.++++.+......+ .     ...++++++.+|++|..++.. .+.+++.|+++++...    
T Consensus       166 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~  245 (578)
T PRK05850        166 QYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFL  245 (578)
T ss_pred             EeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHH
Confidence            9999999999999999999988776654432 2     356789999999999999865 5556667777766643    


Q ss_pred             cCHHHHHHHHHhcCceeeeccHHHH-HHHHccCCC---CCCCCCCceeeEeccCCCCCHHHHHHHhh-c---C---Ceee
Q 009756          227 VTAKAVYTAIATHGVTHFCAAPVVL-NAIANASPE---DTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K---G---FRIT  295 (526)
Q Consensus       227 ~~~~~~~~~i~~~~~t~l~~~P~~~-~~l~~~~~~---~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~---~---~~i~  295 (526)
                      .++..+++.+++++++.. .+|..+ ..+......   .... ++++|.+++||+++++++.+++.+ +   +   ..++
T Consensus       246 ~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~-~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (578)
T PRK05850        246 QRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLD-LGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIR  323 (578)
T ss_pred             HCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcc-hhhheeEEECcCCCCHHHHHHHHHHHHhcCcCccccc
Confidence            268899999999999865 555544 433332111   1223 678999999999999999988863 3   2   3689


Q ss_pred             cccccccCCCCccccccCCCCCC--CCccc--c----------cccccccceeeeecCCceeecCCCCCccCCCCCceEE
Q 009756          296 HTYGLTELTGPASVCAWKPEWDS--LPFET--Q----------ARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGE  361 (526)
Q Consensus       296 ~~YG~tE~~~~~~~~~~~~~~~~--~~~~~--~----------~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Ge  361 (526)
                      +.||+||++..+...........  .....  .          .....+.|.|. +. +++++|++++.+++.|  +.||
T Consensus       324 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~-~~~ivd~~~~~~~~~g--~~Ge  399 (578)
T PRK05850        324 PSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SP-TVRIVDPDTCIECPAG--TVGE  399 (578)
T ss_pred             CccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CC-EEEEEcCCCCcCCCCC--CEEE
Confidence            99999998754433211100000  00000  0          00011233332 34 5899998778888888  8999


Q ss_pred             EEEcCccccccccCChhhhhhhhc------------CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHH
Q 009756          362 IVMRGSCVMKGYLKNPKANEEAFA------------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL  429 (526)
Q Consensus       362 l~v~~~~~~~gy~~~~~~~~~~~~------------~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l  429 (526)
                      |+++|+.++.||+++++.+...|.            ++||+|||+|+++ ||++++.||.+|+|+++|++|+|.+||.+|
T Consensus       400 l~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l  478 (578)
T PRK05850        400 IWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATI  478 (578)
T ss_pred             EEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEECCeecCHHHHHHHH
Confidence            999999999999999999998883            4799999999998 999999999999999999999999999999


Q ss_pred             HcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchh-hhhhhHHHHHHHHHhcCCC--ccCCcEEEec--c-ccCCCCcc
Q 009756          430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADEL-DKGKLAEDVSKFCRAKMPS--YWVPKSVVFA--A-LPKSATGK  503 (526)
Q Consensus       430 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~l~~~l~~~l~~--~~~p~~~~~~--~-lP~t~~GK  503 (526)
                      .+++.+ +++|++.++. .++.++++++++++.... +.......+++.+...+..  ...|..+.++  + ||+|++||
T Consensus       479 ~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GK  556 (578)
T PRK05850        479 QEITGG-RVAAISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLVLVAPGSIPITTSGK  556 (578)
T ss_pred             HHhcCC-cEEEEEecCC-CceEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCCCceEEEEeCCCCcCCCCCch
Confidence            999985 5778888876 678899999988664321 1111234555555544432  2345555544  3 99999999


Q ss_pred             ccHHHHHHHHHhcCCc
Q 009756          504 IQKHLLRAKAKEMGPV  519 (526)
Q Consensus       504 v~r~~l~~~~~~~~~~  519 (526)
                      ++|+.|++.+.+.+..
T Consensus       557 i~R~~l~~~~~~~~~~  572 (578)
T PRK05850        557 IRRAACVEQYRQDEFT  572 (578)
T ss_pred             HHHHHHHHHHHcCCcc
Confidence            9999999999876543

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.3e-57  Score=471.53  Aligned_cols=468  Identities=16%  Similarity=0.146  Sum_probs=345.9

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccCh-----HHHHHHHhhcCc
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNA-----TVVAFILSHASS   75 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~   75 (526)
                      |+||.++++++|++ |   ++.|+++||+|+++++|+++|++++|||+++|++++|+++.++.     +++.++++.+++
T Consensus        83 y~el~~~v~~lA~~-L---~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~  158 (624)
T PRK12582         83 YGEAKRAVDALAQA-L---LDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKP  158 (624)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCC
Confidence            78999999999999 9   99999999999999999999999999999999999999999875     899999999999


Q ss_pred             eEEEEccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCc-C-CCCCCCCCC
Q 009756           76 AVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEF-A-WKPPEDEWQ  153 (526)
Q Consensus        76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~  153 (526)
                      +++|+++...  +.........      ....++.++....         .....++.++........ . ......+++
T Consensus       159 ~~vi~~~~~~--~~~~~~~~~~------~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  221 (624)
T PRK12582        159 RVVFAQSGAP--FARALAALDL------LDVTVVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDT  221 (624)
T ss_pred             cEEEecCHHH--HHHHHHhhhh------cCceEEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCc
Confidence            9999986421  1111111110      0123444432211         012345565554332110 0 011245689


Q ss_pred             eEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcC---CcEEEEecccccchhhHHHHH-HHhhcceeeeec-ccC
Q 009756          154 SIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNE---GAVFLWTLPMFHGNGWSYTWS-LAALCGTSICLR-QVT  228 (526)
Q Consensus       154 ~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~-~~~~g~~~~~~~-~~~  228 (526)
                      +++|+|||||||.||+|++||.++.+........+....   .++++..+|++|.+++...+. .+..|+++++.+ .++
T Consensus       222 ~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~  301 (624)
T PRK12582        222 VAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPL  301 (624)
T ss_pred             eEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcc
Confidence            999999999999999999999999887766555444443   579999999999999866554 445566655543 222


Q ss_pred             ---HHHHHHHHHhcCceeeeccHHHHHHHHccCCCCC----CCCCCceeeEeccCCCCCHHHHHHHhhc-------CCee
Q 009756          229 ---AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT----ILPLTNVVNVNTAGAPPPPSLLFAMSQK-------GFRI  294 (526)
Q Consensus       229 ---~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~----~~~l~~lr~~~~~Ge~l~~~~~~~~~~~-------~~~i  294 (526)
                         ...+++.++++++|+++++|..+..|........    .. ++++|.+++||+++++++.+++.+.       ++++
T Consensus       302 ~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~-~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l  380 (624)
T PRK12582        302 PGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSF-FKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPF  380 (624)
T ss_pred             cchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHH-hhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceE
Confidence               3456788899999999999999998876532221    12 6799999999999999999998853       3689


Q ss_pred             ecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCcccccccc
Q 009756          295 THTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYL  374 (526)
Q Consensus       295 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~  374 (526)
                      ++.||+||++++++.....           ....+++|.|++++ ++++++.        |  +.|||+++|++++.||+
T Consensus       381 ~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~-~v~i~~~--------G--~~GEl~vrg~~v~~GY~  438 (624)
T PRK12582        381 YTGYGATETAPTTTGTHWD-----------TERVGLIGLPLPGV-ELKLAPV--------G--DKYEVRVKGPNVTPGYH  438 (624)
T ss_pred             EeccccccccceeecccCC-----------CCCCCCCCcCCCCc-EEEEccC--------C--CceEEEEECCccccccc
Confidence            9999999997655422111           12236899999999 5888642        3  68999999999999999


Q ss_pred             CChhhhhhhh-cCCeeecCceeEE-c---CCceEEEeccccceee-eCCeeechHHHH--HHHHcCCCeeeeEEEEcCCC
Q 009756          375 KNPKANEEAF-ANGWFHSGDLAVK-H---PDNYIEIKDRLKDVII-SGGENISSVEVE--KVLYLHPLVLEAAVVARPDE  446 (526)
Q Consensus       375 ~~~~~~~~~~-~~g~~~tGD~~~~-~---~~g~~~~~GR~~d~i~-~~G~~v~~~~ie--~~l~~~~~v~~~~v~~~~~~  446 (526)
                      ++++.+...| .+|||+|||+|++ +   ++|++++.||.+|+|+ .+|++|+|.+||  .++.+||.|.+++|++.+++
T Consensus       439 ~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~  518 (624)
T PRK12582        439 KDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRA  518 (624)
T ss_pred             CCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCC
Confidence            9999999888 4899999999998 4   4689999999999999 689999998885  67889999999999999877


Q ss_pred             CCCceeEEEEEecCCC----------chh---hhhhhHHHH---HHHHHhcCCCcc-CCcEEEecc-cc------CCCCc
Q 009756          447 RWGESPCAFVTLKPEA----------DEL---DKGKLAEDV---SKFCRAKMPSYW-VPKSVVFAA-LP------KSATG  502 (526)
Q Consensus       447 ~~~~~~~~~v~~~~~~----------~~~---~~~~~~~~l---~~~l~~~l~~~~-~p~~~~~~~-lP------~t~~G  502 (526)
                      .    +.+.|++....          ..+   +.++..+.+   .+..++.++.+. +|+.+.+++ +|      +|++|
T Consensus       519 ~----~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~  594 (624)
T PRK12582        519 F----IGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKG  594 (624)
T ss_pred             c----EEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccc
Confidence            6    44554433211          000   011122222   223333466666 999988877 76      46788


Q ss_pred             cccHHHHHHHHHhc
Q 009756          503 KIQKHLLRAKAKEM  516 (526)
Q Consensus       503 Kv~r~~l~~~~~~~  516 (526)
                      |+.|+...+.|.+.
T Consensus       595 ~~~R~~~~~~y~~~  608 (624)
T PRK12582        595 YINQRAVLERRAAL  608 (624)
T ss_pred             cccHHHHHHHHHHH
Confidence            89999988888754

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.3e-56  Score=443.20  Aligned_cols=396  Identities=19%  Similarity=0.202  Sum_probs=339.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |.||.++++++|+. |   . .|+++|++|+++++|++++++++||++++|++++|+++..+.+++..+++.++++++++
T Consensus        11 y~el~~~~~~~a~~-l---~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~   85 (414)
T PRK08308         11 KSDFDLRLQRYEEM-E---Q-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY   85 (414)
T ss_pred             HHHHHHHHHHHHHH-H---H-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence            78999999999999 7   5 68999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      ++....                  ..      .                          .      ....++++++++||
T Consensus        86 ~~~~~~------------------~~------~--------------------------~------~~~~~~~~~~i~~T  109 (414)
T PRK08308         86 GESDFT------------------KL------E--------------------------A------VNYLAEEPSLLQYS  109 (414)
T ss_pred             cCcccc------------------cc------c--------------------------C------CCCCCCCceEEEEC
Confidence            763100                  00      0                          0      01355789999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecccCHHHHHHHHHhc
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQVTAKAVYTAIATH  239 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  239 (526)
                      |||||.||+|.++|+++.+.+......+....+++++...|++|.+++.. .+.++..|+++++....++..+++.++++
T Consensus       110 SGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~  189 (414)
T PRK08308        110 SGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNT  189 (414)
T ss_pred             CCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHh
Confidence            99999999999999999988888888888889999999999999998754 55666778888888888999999999999


Q ss_pred             CceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCCCC
Q 009756          240 GVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL  319 (526)
Q Consensus       240 ~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~  319 (526)
                      ++|.++++|+.+..+.+....     ..+++.++++|+++++++.+++++.+.++++.||+||++.+.....        
T Consensus       190 ~~t~~~~~P~~~~~l~~~~~~-----~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~--------  256 (414)
T PRK08308        190 PQHILYAVPLMLHILGRLLPG-----TFQFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGCVSICPD--------  256 (414)
T ss_pred             CCeEEEcCHHHHHHHHhcCCc-----cccccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCCeeecCC--------
Confidence            999999999999999876532     2467889999999999999999877789999999999975432110        


Q ss_pred             CcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcC
Q 009756          320 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP  399 (526)
Q Consensus       320 ~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~  399 (526)
                           ......+|.|++++ ++++.+.+       +  +.||+++++.                  ++||+|||++++++
T Consensus       257 -----~~~~~~~G~p~~~~-~~~~~~~~-------~--~~gel~v~~~------------------~~~~~TGDl~~~~~  303 (414)
T PRK08308        257 -----MKSHLDLGNPLPHV-SVSAGSDE-------N--APEEIVVKMG------------------DKEIFTKDLGYKSE  303 (414)
T ss_pred             -----CCCCCccCccCCCe-EEEEecCC-------C--CCceEEEEcC------------------CceEECCceEEECC
Confidence                 01125789999998 58876532       2  5799998652                  57999999999999


Q ss_pred             CceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHH
Q 009756          400 DNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCR  479 (526)
Q Consensus       400 ~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~  479 (526)
                      ||++++.||.||+||++|.+|+|.+||.++.++++|.+++|++.+++..++.+.++++.....       ...+++++++
T Consensus       304 dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~~-------~~~~l~~~l~  376 (414)
T PRK08308        304 RGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEEI-------DPVQLREWCI  376 (414)
T ss_pred             CccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCC-------CHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998889999998876533       3478889999


Q ss_pred             hcCCCccCCcEEEecc-ccCCCCccccHHHHH
Q 009756          480 AKMPSYWVPKSVVFAA-LPKSATGKIQKHLLR  510 (526)
Q Consensus       480 ~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~  510 (526)
                      ++|+.+++|..+.+++ ||+|++||++|+.|+
T Consensus       377 ~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~  408 (414)
T PRK08308        377 QHLAPYQVPHEIESVTEIPKNANGKVSRKLLE  408 (414)
T ss_pred             HhCccccCCcEEEEeccCCCCCCcCeehhhhh
Confidence            9999999999999988 999999999999543

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-55  Score=457.12  Aligned_cols=467  Identities=21%  Similarity=0.223  Sum_probs=353.7

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHH-------HHHHhhc
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVV-------AFILSHA   73 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l-------~~~l~~~   73 (526)
                      |.||+++++++|++ |   .+.|+++||+|+|+++|+++++++++||+++|++++++++..+..++       .++++.+
T Consensus        32 y~el~~~v~~~a~~-L---~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~  107 (545)
T PRK07768         32 WGEVHERARRIAGG-L---AAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMI  107 (545)
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEECCCchHHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhC
Confidence            78999999999999 9   99999999999999999999999999999999999999988776544       4567788


Q ss_pred             CceEEEEccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCC
Q 009756           74 SSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQ  153 (526)
Q Consensus        74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  153 (526)
                      +++++++++...........          ....+                     ..+++++...+.   ......+++
T Consensus       108 ~~~~v~~~~~~~~~~~~~~~----------~~~~~---------------------~~~~~l~~~~~~---~~~~~~~~~  153 (545)
T PRK07768        108 GAKAVVVGEPFLAAAPVLEE----------KGIRV---------------------LTVADLLAADPI---DPVETGEDD  153 (545)
T ss_pred             CCCEEEecchhhhhhhhhcc----------cCCce---------------------eehhhhcccCCC---CcCCCCCCC
Confidence            99999998765433322100          00111                     233444332221   112346789


Q ss_pred             eEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCC-cEEEEecccccchhhHHHH-HHHhhcceeeeecc----c
Q 009756          154 SIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEG-AVFLWTLPMFHGNGWSYTW-SLAALCGTSICLRQ----V  227 (526)
Q Consensus       154 ~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~-~~~~~g~~~~~~~~----~  227 (526)
                      +++++|||||||.||+|+++|.++...+......+++..+ +++++.+|++|..++...+ ..+..|++++....    .
T Consensus       154 ~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~  233 (545)
T PRK07768        154 LALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLR  233 (545)
T ss_pred             EEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHH
Confidence            9999999999999999999999998888877777788776 8999999999999987544 45666776666643    2


Q ss_pred             CHHHHHHHHHhcCceeeeccHHHHHHHHccCC----CCCCCCCCceeeEeccCCCCCHHHHHHHhh----cCC---eeec
Q 009756          228 TAKAVYTAIATHGVTHFCAAPVVLNAIANASP----EDTILPLTNVVNVNTAGAPPPPSLLFAMSQ----KGF---RITH  296 (526)
Q Consensus       228 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~----~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~----~~~---~i~~  296 (526)
                      ++..+.+.+++++++++.+.|..+..+.....    ..... ++++|.++++|++++++..+.+.+    ++.   .+++
T Consensus       234 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~  312 (545)
T PRK07768        234 DPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFD-LSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILP  312 (545)
T ss_pred             hHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCC-chheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccc
Confidence            67788999999999999888887776664321    11233 789999999999999999998864    344   4999


Q ss_pred             ccccccCCCCccccccCCCC-------CCC-------C-cccccccccccceeeeecCCceeecCCCCCccCCCCCceEE
Q 009756          297 TYGLTELTGPASVCAWKPEW-------DSL-------P-FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGE  361 (526)
Q Consensus       297 ~YG~tE~~~~~~~~~~~~~~-------~~~-------~-~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Ge  361 (526)
                      .||+||++..++........       +..       + .........++|.|.+++ .++++|++ +++++.+  +.||
T Consensus       313 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~-~~~i~~~~-~~~~~~g--~~Ge  388 (545)
T PRK07768        313 AYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGL-EVRVVDED-GQVLPPR--GVGV  388 (545)
T ss_pred             cccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCC-EEEEECCC-CCCCCCC--CEEE
Confidence            99999998655433221100       000       0 000012336799999999 69999966 8888887  7999


Q ss_pred             EEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEE
Q 009756          362 IVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV  441 (526)
Q Consensus       362 l~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~  441 (526)
                      |+++|+.++.||++........+.+|||+|||+++++++|.++++||.+|+|+.+|.+++|.+||..+.++|+|.+++|+
T Consensus       389 l~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv  468 (545)
T PRK07768        389 IELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAV  468 (545)
T ss_pred             EEEccCcccccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEE
Confidence            99999999999998765555445688999999999999999999999999999999999999999999999999998777


Q ss_pred             EcC--CCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHhcCCCc--cCCcEEEecc---ccCCCCccccHHHHHHHHH
Q 009756          442 ARP--DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY--WVPKSVVFAA---LPKSATGKIQKHLLRAKAK  514 (526)
Q Consensus       442 ~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~p~~~~~~~---lP~t~~GKv~r~~l~~~~~  514 (526)
                      +..  +...++.+.++++........    ...++.+.+++.+..+  .+|..+.+++   ||+|++||++|+.|+++|.
T Consensus       469 ~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~  544 (545)
T PRK07768        469 AVRLDAGHSREGFAVAVESNAFEDPA----EVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELVT  544 (545)
T ss_pred             EEEecCCCCceEEEEEEEecccccHH----HHHHHHHHHHHHHHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence            654  333345555555544332221    3345666666655433  5777777653   9999999999999999875

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=1.4e-51  Score=411.83  Aligned_cols=392  Identities=25%  Similarity=0.278  Sum_probs=326.5

Q ss_pred             CccchhhhhhcccccccCccC-CCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLL-FPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~-~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.+.++++|++ |   .+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+.+.++++.+++++++
T Consensus         2 ~~~l~~~~~~~a~~-l---~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii   77 (408)
T TIGR01733         2 YRELDERANRLARH-L---RAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLL   77 (408)
T ss_pred             HHHHHHHHHHHHHH-H---HHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEE
Confidence            78999999999999 8   77 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~  159 (526)
                      ++++....+...             ....+.+...                 +...................+++++++|
T Consensus        78 ~~~~~~~~~~~~-------------~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~  127 (408)
T TIGR01733        78 TDSALASRLAGL-------------VLPIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIY  127 (408)
T ss_pred             EcCchhhhcccc-------------CCceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEE
Confidence            998765543221             1122222111                 0000001000000111135688999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccC---HHHHHHHH
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVT---AKAVYTAI  236 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~i  236 (526)
                      ||||||.||+|.+||+++..........+.+..++++++..|++|.+++...+.++..|+++++.+...   +..+.+.+
T Consensus       128 TSGTtG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~  207 (408)
T TIGR01733       128 TSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALI  207 (408)
T ss_pred             cCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHH
Confidence            999999999999999999999998888889999999999999999999888888888898888875533   58899999


Q ss_pred             HhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcC-CeeecccccccCCCCccccccCC
Q 009756          237 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKG-FRITHTYGLTELTGPASVCAWKP  314 (526)
Q Consensus       237 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~-~~i~~~YG~tE~~~~~~~~~~~~  314 (526)
                      +++++|.+.++|.+++.|.+...   .. ++++|.+++||+++++++.+.+. .++ +.+++.||+||++++++......
T Consensus       208 ~~~~~t~l~~~p~~~~~l~~~~~---~~-~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~  283 (408)
T TIGR01733       208 AEHPVTVLNLTPSLLALLAAALP---PA-LASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDA  283 (408)
T ss_pred             HHcCceEEEeCHHHHHHHHHhhh---hc-ccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCc
Confidence            99999999999999999998765   33 78999999999999999999998 455 89999999999987775333222


Q ss_pred             CCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcC-------C
Q 009756          315 EWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN-------G  387 (526)
Q Consensus       315 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------g  387 (526)
                      .....     . ...++|.|.+++ +++|+|++ +++++.|  +.|||+++|+.++.||++++..+...|..       |
T Consensus       284 ~~~~~-----~-~~~~~G~~~~~~-~~~i~~~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~  353 (408)
T TIGR01733       284 DDAPR-----E-SPVPIGRPLANT-RLYVLDDD-LRPVPVG--VVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDG  353 (408)
T ss_pred             cccCC-----c-cccccCcccCCc-eEEEECCC-CCCCCCC--CceEEEecCccccccccCChhhhhcceeeCCCCCCCC
Confidence            11100     0 147899999999 59999998 8888887  79999999999999999999988888743       2


Q ss_pred             --eeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEE
Q 009756          388 --WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV  440 (526)
Q Consensus       388 --~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  440 (526)
                        ||+|||+++++++|++++.||.+|+++.+|++++|.+||+++.+++.|.+++|
T Consensus       354 ~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       354 ARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             ceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence              99999999999999999999999999999999999999999999999998865

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=2.6e-52  Score=418.13  Aligned_cols=378  Identities=24%  Similarity=0.344  Sum_probs=295.6

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||+++++++|.+ |   +++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|+
T Consensus        24 y~~l~~~v~~la~~-L---~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~   99 (417)
T PF00501_consen   24 YKQLYERVRKLAAA-L---RKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIIT   99 (417)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEE
T ss_pred             HHHHHHHHHHHhhH-H---HHhCCCccccccccCCccceeeeeecccccccccccccccccccccccccccccceeEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999998


Q ss_pred             c--cchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCC-CCCCCeEEE
Q 009756           81 D--QEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP-EDEWQSIAL  157 (526)
Q Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~a~i  157 (526)
                      .  .+... +.++......    ......++.++......             ...+.......... .+ ..+++++++
T Consensus       100 ~~~~d~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~-~~~~~~~~~~~i  160 (417)
T PF00501_consen  100 SEAVDSEP-LKKLKSIFKQ----EDPSSSIIILDRDDLPK-------------KEALKSASLSDEPQ-SPEDSPDDPAFI  160 (417)
T ss_dssp             CHHHSCHH-HHHHHHHHTT----STTTEEEEEESHSSCTT-------------CHHHHHHHHCHCSH-STTHTTTSEEEE
T ss_pred             eccccccc-cccchhhhcc----ccccccccccccccccc-------------cccccccccccccc-cCCCCccceeEe
Confidence            1  01112 2222222210    00234566665443211             01111000000000 00 056899999


Q ss_pred             EecCCCCCCccceeecchhHHHHHHhhH--hHhCCcCCcEEEEecccccchhh-HHHHHHHhhcceeeeecccC---HHH
Q 009756          158 GYTSGTTASPKGVVVSHRGAYLMSLNGA--LIWGMNEGAVFLWTLPMFHGNGW-SYTWSLAALCGTSICLRQVT---AKA  231 (526)
Q Consensus       158 ~~TSGsTG~pK~v~~t~~~l~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~g~~~~~~~~~~---~~~  231 (526)
                      +|||||||.||+|.++|+++++.+....  ..++++  +++++..|++|.+++ ...+.++..|+++++.+...   +..
T Consensus       161 ~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~  238 (417)
T PF00501_consen  161 LFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPES  238 (417)
T ss_dssp             EEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHH
T ss_pred             eccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999988877754  222333  699999999999999 67777778888888876543   467


Q ss_pred             HHHHHHhcCceeeeccHHHHHHHHccCCCC----CCCCCCceeeEeccCCCCCHHHHHHHhh-cCC-eeecccccccCCC
Q 009756          232 VYTAIATHGVTHFCAAPVVLNAIANASPED----TILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGF-RITHTYGLTELTG  305 (526)
Q Consensus       232 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~----~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~-~i~~~YG~tE~~~  305 (526)
                      +++.++++++|+++++|+++..|++.....    ... ++++|.++++|+++++++.+++++ ++. ++++.||+||++.
T Consensus       239 ~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~-l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~  317 (417)
T PF00501_consen  239 LLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKD-LSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGS  317 (417)
T ss_dssp             HHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTT-GTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSS
T ss_pred             chhcccccccccccccccccccccccccccccccccc-cccccccccccccCChhhccccccccccccceecccccccce
Confidence            899999999999999999999999843222    223 888999999999999999999985 465 8999999999998


Q ss_pred             CccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc
Q 009756          306 PASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA  385 (526)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~  385 (526)
                      +++....         ........++|.|++++ +++|+|++++++++.|  +.|||+++|++++.||+++++.+...|.
T Consensus       318 ~~~~~~~---------~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~~g--~~Gei~i~~~~~~~gy~~~~~~~~~~~~  385 (417)
T PF00501_consen  318 IATIRPP---------EDDIEKPGSVGKPLPGV-EVKIVDPNTGEPLPPG--EPGEIVIRGPNVFSGYYNDPELTAEAFI  385 (417)
T ss_dssp             EEEEEET---------TTHHSSTTSEBEESTTE-EEEEECTTTSSBESTT--SEEEEEEESTTSBSEETTBHHHHHHHEE
T ss_pred             eeecccc---------ccccccccccccccccc-cccccccccccccccc--ccccccccCCccceeeeccccccccccc
Confidence            8865320         01112236789999999 6999999999999988  7899999999999999999999999997


Q ss_pred             C-CeeecCceeEEcCCceEEEeccccceeeeC
Q 009756          386 N-GWFHSGDLAVKHPDNYIEIKDRLKDVIISG  416 (526)
Q Consensus       386 ~-g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~  416 (526)
                      + |||+|||+|++++||.++++||.||+||++
T Consensus       386 ~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  386 DDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             TTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             cccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            6 899999999999999999999999999864

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-48  Score=366.36  Aligned_cols=477  Identities=21%  Similarity=0.244  Sum_probs=370.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+|+...++++|+. |   ...|++.||+|+|+++|.++++.++|+++++|++...||.+...+.+.|.+..++++++|+
T Consensus       107 f~e~~~~s~~~A~~-~---~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~  182 (649)
T KOG1179|consen  107 FAELDARSNRVANY-L---HAEGLKAGDVVALLMENRPEFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVV  182 (649)
T ss_pred             HHHHHHHHHHHHHH-H---HHhhcccCCEEEEecCCChhHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEE
Confidence            67899999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCC---CCCCCCCCeEEE
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW---KPPEDEWQSIAL  157 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~a~i  157 (526)
                      +.+....+.++.+.+..      ..-.++..+...         ..++..++.+.++.......+   ....+..++++.
T Consensus       183 ~~el~~~~~e~~~~l~~------~~i~~~~~~~~~---------~~~g~~~L~~~l~~~~~~~vp~~~~~~~~~~s~~ly  247 (649)
T KOG1179|consen  183 GPELLNALEEILPLLIK------NGIHVFSLGPTS---------VPDGIESLLAKLSAAPKHPVPVSTRSGLTFRSPLLY  247 (649)
T ss_pred             CHHHHHHHHhcchhhhh------ccceEEecCCCC---------CCchHHHHHHhhcccccCCCCcccCCCccccceeEE
Confidence            99998888877444431      123344443332         223444555555554443322   223466789999


Q ss_pred             EecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHH-HHhhcceeeeecccCHHHHHHHH
Q 009756          158 GYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWS-LAALCGTSICLRQVTAKAVYTAI  236 (526)
Q Consensus       158 ~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~i  236 (526)
                      +|||||||.||+.+++|......+......++++.+|+++..+|++|+.+....+. ++..|+++++-.+++...+|+..
T Consensus       248 IYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC  327 (649)
T KOG1179|consen  248 IYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDC  327 (649)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHHH
Confidence            99999999999999999998888887888999999999999999999988765554 55566766666889999999999


Q ss_pred             HhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCe-eecccccccCCCCccccccCC
Q 009756          237 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFR-ITHTYGLTELTGPASVCAWKP  314 (526)
Q Consensus       237 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~-i~~~YG~tE~~~~~~~~~~~~  314 (526)
                      .+|++|++.-.--+.+.|++.+...... --.+|  +.-|..+-+++++.+. ++|.. |.+.||+||...-......+-
T Consensus       328 ~k~~~Tv~QYIGElcRYLl~~p~~~~er-~HkVR--la~GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~~v  404 (649)
T KOG1179|consen  328 RKYNVTVIQYIGELCRYLLNQPPSPEER-QHKVR--LAYGNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDGRV  404 (649)
T ss_pred             HHhCCeeeehHHHHHHHHHcCCCChhhc-CceEE--EEecCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeecCcc
Confidence            9999999999999999999997655433 33444  4458889999999987 77765 999999999875544432221


Q ss_pred             CCCCCCcccccccccccceeeeecCCceeecCCC--------CCccCCCCCceEEEEEc--C--c-cccccccCChhhhh
Q 009756          315 EWDSLPFETQARLNARQGVRTICLDGLDVIDART--------NQPVPADGKTIGEIVMR--G--S-CVMKGYLKNPKANE  381 (526)
Q Consensus       315 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~--------g~~~~~~~~~~Gel~v~--~--~-~~~~gy~~~~~~~~  381 (526)
                      .....       . +...+-+..+ ++--+|++|        |-..++..||.|.++-+  .  | .-+.||.+....+.
T Consensus       405 GA~G~-------~-~~~~~~l~p~-~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~  475 (649)
T KOG1179|consen  405 GACGF-------M-SRLLKLLYPF-RLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATE  475 (649)
T ss_pred             ccccc-------h-hhhhhhccce-EEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhh
Confidence            10000       0 0011111111 122233333        44444444478866433  2  2 23789998666655


Q ss_pred             hhh-----c--CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCC-CceeE
Q 009756          382 EAF-----A--NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW-GESPC  453 (526)
Q Consensus       382 ~~~-----~--~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~-~~~~~  453 (526)
                      +..     .  |-||+|||+-.+|+.|++|+.+|..|++...|++|+..|||++|..+..+.|+.|.++.-+.. |..=.
T Consensus       476 kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGM  555 (649)
T KOG1179|consen  476 KKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGM  555 (649)
T ss_pred             hhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccce
Confidence            554     3  449999999999999999999999999999999999999999999999999999999887764 34445


Q ss_pred             EEEEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHH
Q 009756          454 AFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA  513 (526)
Q Consensus       454 ~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~  513 (526)
                      |.|++.+....     +..++-+++++.||+|.+|..+.+.+ +++|.+=|..+.+|.+.-
T Consensus       556 AaI~~~p~~~~-----d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~eg  611 (649)
T KOG1179|consen  556 AAIVLDPTTEK-----DLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQKEG  611 (649)
T ss_pred             EEEEecCcccc-----hHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHHHcc
Confidence            77776777655     78999999999999999999999998 999999999999998765

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.9e-47  Score=372.83  Aligned_cols=321  Identities=23%  Similarity=0.316  Sum_probs=272.1

Q ss_pred             CCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee---c
Q 009756          149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL---R  225 (526)
Q Consensus       149 ~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~---~  225 (526)
                      ..++++++++|||||||.||+|.++|.++..........  +...++++...|++|..++...+..+..|++.+++   .
T Consensus        32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~  109 (358)
T PRK07824         32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR--LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA  109 (358)
T ss_pred             CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc--cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence            356799999999999999999999999988877665544  33557888899999999988888888888888773   3


Q ss_pred             ccCHHHHHHHHHhcC--ceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccC
Q 009756          226 QVTAKAVYTAIATHG--VTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTEL  303 (526)
Q Consensus       226 ~~~~~~~~~~i~~~~--~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~  303 (526)
                      .+++..+++.+++++  .++...+|..+..+...... ... ++++|.+++||+++++++.+++.+.++++++.||+||+
T Consensus       110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~~~-~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~TE~  187 (358)
T PRK07824        110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-TAA-LAELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMSET  187 (358)
T ss_pred             CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-cCC-cccceEEEECCCCCCHHHHHHHHhcCCcEEecccCCcc
Confidence            478999999999998  55666788888777665432 223 78999999999999999999998889999999999998


Q ss_pred             CCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhh
Q 009756          304 TGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEA  383 (526)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~  383 (526)
                      ++.+.                     ..|.|++++ ++++.              .|||+++|+.++.||++++.... .
T Consensus       188 ~~~~~---------------------~~G~~~~g~-~v~i~--------------~Gei~v~g~~~~~gY~~~~~~~~-~  230 (358)
T PRK07824        188 SGGCV---------------------YDGVPLDGV-RVRVE--------------DGRIALGGPTLAKGYRNPVDPDP-F  230 (358)
T ss_pred             CCCcC---------------------cCceeCCCC-EEEec--------------CCEEEEecCccccccCCCccccc-c
Confidence            75321                     247777777 46662              28999999999999999876432 1


Q ss_pred             hcCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCc
Q 009756          384 FANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEAD  463 (526)
Q Consensus       384 ~~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  463 (526)
                      ..+|||+|||++++ ++|.+++.||.||+|+.+|++|+|.+||.+|.++|+|.+++|++.+++..++.++++++...+..
T Consensus       231 ~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~  309 (358)
T PRK07824        231 AEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPA  309 (358)
T ss_pred             cCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCC
Confidence            24789999999999 79999999999999999999999999999999999999999999999988999999998765543


Q ss_pred             hhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          464 ELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       464 ~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      .     ..+++++++++.++.+++|..+.+++ ||+|++||++|++|++++.++
T Consensus       310 ~-----~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  358 (358)
T PRK07824        310 P-----TLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAGE  358 (358)
T ss_pred             c-----CHHHHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhcC
Confidence            3     56889999999999999999999988 999999999999999998653

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1.4e-43  Score=384.64  Aligned_cols=452  Identities=14%  Similarity=0.071  Sum_probs=329.1

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+|+.++++++|++ |   .++|+++||+|+|+++|+++|+++++||+++|+++||+++  +.+++.+++++++++++|+
T Consensus       460 Y~El~~~V~~lAa~-L---~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv  533 (1452)
T PTZ00297        460 YGTVDARARELGSG-L---LALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFA  533 (1452)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999975  4678999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCch-hhhhhhhcCcccHHHHHhhCCCCcC-CCCCCCCCCeEEEE
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSK-QLEYALARGAIEYEKFLETGDPEFA-WKPPEDEWQSIALG  158 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~a~i~  158 (526)
                      +.+....+.++..  +       .++.++.++....... ..+........+|+++++.+..... .....+++|++.|+
T Consensus       534 ~~~~l~kl~~i~~--~-------~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIi  604 (1452)
T PTZ00297        534 DRNSVAAILTCRS--R-------KLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYV  604 (1452)
T ss_pred             chhHHHHHHhhcc--c-------CCcEEEEECCCcccccccccccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEE
Confidence            9877665554321  1       4788998864211000 0000111235679999887642111 12224678899998


Q ss_pred             e---cCCCCCCccceeecchhHHHHHHhhHhHh---CCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHH
Q 009756          159 Y---TSGTTASPKGVVVSHRGAYLMSLNGALIW---GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAV  232 (526)
Q Consensus       159 ~---TSGsTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  232 (526)
                      |   ||||||.||||++||+++++.+.......   ...++|++++++|++|.++....+.++..|+++..   +++..+
T Consensus       605 YtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~---~d~~~l  681 (1452)
T PTZ00297        605 VDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVAT---VDAAHL  681 (1452)
T ss_pred             ecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEEe---CCHHHH
Confidence            5   99999999999999999999988765432   35678999999999999997666667677776643   468999


Q ss_pred             HHHHHhcCceeeeccHHHHHHHHccCCCC--------------------------CCC---------------CCCceee
Q 009756          233 YTAIATHGVTHFCAAPVVLNAIANASPED--------------------------TIL---------------PLTNVVN  271 (526)
Q Consensus       233 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------------------------~~~---------------~l~~lr~  271 (526)
                      ++.+++++||+++++|++|+.+.......                          ...               --..+|.
T Consensus       682 ledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~  761 (1452)
T PTZ00297        682 QRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEK  761 (1452)
T ss_pred             HHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEE
Confidence            99999999999999999999776431100                          000               0146888


Q ss_pred             EeccCC--CCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCC-C
Q 009756          272 VNTAGA--PPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDAR-T  348 (526)
Q Consensus       272 ~~~~Ge--~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~-~  348 (526)
                      +++||.  +++..     ...++++..+||+||..   +..... .         .   ...|.|+|++ ++++.+.+ .
T Consensus       762 ~isGga~~~l~~~-----l~~~i~i~~g~glTE~~---~~~~~~-~---------~---~~~G~Plpgv-EvKI~~~~E~  819 (1452)
T PTZ00297        762 IVLCVSEESTSFS-----LLEHISVCYVPCLREVF---FLPSEG-V---------F---CVDGTPAPSL-QVDLEPFDEP  819 (1452)
T ss_pred             EEECCCccccChH-----HhCCceEEEecceEEee---eecCCC-C---------c---ccCCeecCce-EEEEcccccc
Confidence            888873  44433     33367888899999942   111110 0         0   1239999999 69998743 2


Q ss_pred             CCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCCceEEEeccccceee-eCCeeechHHHHH
Q 009756          349 NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVEVEK  427 (526)
Q Consensus       349 g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~-~~G~~v~~~~ie~  427 (526)
                      +..   +  ..|||+++       |.++++.|... .+||+         +||++++.||.+|+|| .+|++|.|+.||.
T Consensus       820 ~~~---~--~~GEIlvr-------~~kdpe~T~e~-~~gW~---------~dG~L~IidRkKdlikls~GEyVaP~~IE~  877 (1452)
T PTZ00297        820 SDG---A--GIGQLVLA-------KKGEPRRTLPI-AAQWK---------RDRTLRLLGPPLGILLPVAYEYVIAAELER  877 (1452)
T ss_pred             cCC---C--CCCeEEEE-------ECCChHHHHHh-hCcCc---------cCCeEEEEeccccceECCCCcEEcHHHHHH
Confidence            221   1  35999995       45788877763 35554         6999999999999999 8999999999999


Q ss_pred             HHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCch---------h---------hhhhhHH----HHHHHH---H--h
Q 009756          428 VLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE---------L---------DKGKLAE----DVSKFC---R--A  480 (526)
Q Consensus       428 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---------~---------~~~~~~~----~l~~~l---~--~  480 (526)
                      ++..+|.|.+++|++.+.+.    ++|+|+++...-.         +         +..+..+    .+.+.+   .  +
T Consensus       878 ~l~~sp~I~qi~V~Gd~~k~----lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n  953 (1452)
T PTZ00297        878 IFSQSRYVNDIFLYADPSRP----IIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKEN  953 (1452)
T ss_pred             HHhcCCCccEEEEEecCCCc----eEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHh
Confidence            99999999999999988765    8898887742211         0         0011111    232222   2  2


Q ss_pred             cCCCccCCcEEEecc--c-----cCCCCccccHHHHHHHHHhcCC
Q 009756          481 KMPSYWVPKSVVFAA--L-----PKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       481 ~l~~~~~p~~~~~~~--l-----P~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      .+..+.+++.+.+.+  +     -+|++.|+.|+.+.+.|.+...
T Consensus       954 ~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie  998 (1452)
T PTZ00297        954 GLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIE  998 (1452)
T ss_pred             CcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHH
Confidence            356677887766643  4     2699999999999999986543

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=5.7e-38  Score=304.90  Aligned_cols=287  Identities=22%  Similarity=0.220  Sum_probs=225.4

Q ss_pred             CCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcC--CcEEEEecccccchhhHHH-HHHHhhcceeeeecccC
Q 009756          152 WQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNE--GAVFLWTLPMFHGNGWSYT-WSLAALCGTSICLRQVT  228 (526)
Q Consensus       152 ~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~-~~~~~~g~~~~~~~~~~  228 (526)
                      +..++++|||||||.||+|.++|.++.+.+......+++..  .+++++.+|++|.+++.+. +.++..|++++....++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~  174 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP  174 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence            45789999999999999999999999988877777776643  4679999999999887654 44556677777777788


Q ss_pred             HHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCC-eeecccccccCCCCc
Q 009756          229 AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGF-RITHTYGLTELTGPA  307 (526)
Q Consensus       229 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~-~i~~~YG~tE~~~~~  307 (526)
                      +..+++.++..  |+++++|++++.|.+..    .. +++++. ++||+++++++++.+.+.+. ++++.||+||+++++
T Consensus       175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~-l~slr~-i~gGa~l~~~l~~~~~~~g~~~v~~~YG~TEt~~i~  246 (386)
T TIGR02372       175 ASGIMRHARPG--DLIVGTPFIWEQLADLD----YR-LPGVVG-VSSGAPSTAATWRCLLAAGLARLLEVYGATETGGIG  246 (386)
T ss_pred             hHHHHHhhccC--CEEEECcHHHHHHHhhC----cC-CCccee-EecCCCCCHHHHHHHHHhcccchhheeccccccccc
Confidence            88888887654  89999999999998753    22 566775 67899999999999987664 699999999998765


Q ss_pred             cccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCC
Q 009756          308 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG  387 (526)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g  387 (526)
                      +....                ...|.+.|++ ++.+ + + +.          +   .|+                  ..
T Consensus       247 ~~~~~----------------~~~~~~~p~~-~~~~-~-~-~~----------~---~g~------------------~~  275 (386)
T TIGR02372       247 LREAP----------------DDPFRLLPDL-ACFA-D-T-LS----------S---AGL------------------AR  275 (386)
T ss_pred             cccCC----------------CCCcccCCCc-cccC-C-C-cc----------C---CCc------------------cc
Confidence            43210                1234455554 2322 1 1 11          0   011                  12


Q ss_pred             eeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhh
Q 009756          388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDK  467 (526)
Q Consensus       388 ~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  467 (526)
                      |++|||+++++++|++++.||.||+|+++|.+|+|.+||+.+.++|+|.+++|..     .++.+.++|++.++...   
T Consensus       276 ~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~---  347 (386)
T TIGR02372       276 RLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADE---  347 (386)
T ss_pred             eeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCCh---
Confidence            5899999999999999999999999999999999999999999999999998863     25678999988754332   


Q ss_pred             hhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCcccc
Q 009756          468 GKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQ  505 (526)
Q Consensus       468 ~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~  505 (526)
                      ....++++++++++++.|++|..+.+++ ||+|++||++
T Consensus       348 ~~~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~  386 (386)
T TIGR02372       348 AELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA  386 (386)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence            1145789999999999999999999998 9999999984

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=2.4e-37  Score=308.64  Aligned_cols=324  Identities=19%  Similarity=0.186  Sum_probs=238.5

Q ss_pred             CCCCeEEEEecCCCCCCccceeecchhHHHHHHhh---HhHhCCcCCcEEEEecccccchh-hHHHHHHHhhcceeeeec
Q 009756          150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNG---ALIWGMNEGAVFLWTLPMFHGNG-WSYTWSLAALCGTSICLR  225 (526)
Q Consensus       150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~g~~~~~~~  225 (526)
                      +.++++++++||||||.||++.++|.++.......   ...+++.++|++++..+..+..+ +...+.....|++++.+.
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  152 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS  152 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence            45678889999999999999999999876654433   33457889999988766544333 333444556677777776


Q ss_pred             ccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCC-CCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccC
Q 009756          226 QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTEL  303 (526)
Q Consensus       226 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~  303 (526)
                      ..+++.+++.|++++||+++++|+++..|++........ ...++|.++++||++++++.+.++ .+|+++++.||+||+
T Consensus       153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~  232 (422)
T TIGR02155       153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEV  232 (422)
T ss_pred             CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhh
Confidence            667899999999999999999999999998764333221 135899999999999999999998 569999999999998


Q ss_pred             CCCccccccCCCCCCCCcccccccccccceeee--ecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhh
Q 009756          304 TGPASVCAWKPEWDSLPFETQARLNARQGVRTI--CLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE  381 (526)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~--~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~  381 (526)
                      ++....+....              ...|.+++  .. .++|+|+++|++++.|  +.|||++++..            .
T Consensus       233 ~~~~~~~~~~~--------------~~~g~~~~~~~~-~~eivd~~~g~~v~~G--e~Gelvvt~~~------------~  283 (422)
T TIGR02155       233 IGPGVAMECVE--------------TQDGLHIWEDHF-YPEIIDPHTGEVLPDG--EEGELVFTTLT------------K  283 (422)
T ss_pred             cCCceeecccc--------------cCCCceEecCee-EEEEECCCCCCCCCCC--CeeEEEEecCC------------c
Confidence            53222111100              01122222  23 4789998779999988  79999998742            2


Q ss_pred             hhhcCCeeecCceeEEcCC-c-----eEEEeccccceeeeCCeeechHHHHHHHHcCCCee-eeEEEEcCCCCCCceeEE
Q 009756          382 EAFANGWFHSGDLAVKHPD-N-----YIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL-EAAVVARPDERWGESPCA  454 (526)
Q Consensus       382 ~~~~~g~~~tGD~~~~~~~-g-----~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~-~~~v~~~~~~~~~~~~~~  454 (526)
                      ..|..+||+|||+++++++ |     .+++.||.+|+|+++|.+|+|.+||.++.++|+|. ++++.. ......+.+.+
T Consensus       284 ~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~-~~~~~~~~~~~  362 (422)
T TIGR02155       284 EALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLEL-TRNGHMDELTL  362 (422)
T ss_pred             cccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEE-EcCCCccEEEE
Confidence            3445679999999999875 4     36799999999999999999999999999999998 555544 44444566777


Q ss_pred             EEEecCCCc----hhhhhhhHHHHHHHHHhcCCCccCCcEEEec--c-ccCCCCccccHH
Q 009756          455 FVTLKPEAD----ELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA--A-LPKSATGKIQKH  507 (526)
Q Consensus       455 ~v~~~~~~~----~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~--~-lP~t~~GKv~r~  507 (526)
                      .|+..++..    .++.....++|.+.+++.+..+.   .+.++  + ||+|+ ||+.|.
T Consensus       363 ~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~v~~~~~~~lp~~~-GK~~~~  418 (422)
T TIGR02155       363 KVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSM---DVHLVEPGSLPRSE-GKARRV  418 (422)
T ss_pred             EEEEecCcccccchHHHHHHHHHHHHHHHhccCcEE---EEEEECCCCccCCC-CCceEE
Confidence            777765431    12223346788888888887653   23433  4 99988 999873

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.4e-36  Score=320.61  Aligned_cols=380  Identities=20%  Similarity=0.245  Sum_probs=310.7

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+|+..+++++|+. |   .+.|++++++|+++.+.+.+++++++|++++|+.++|+++.++.+++.++++..+++.+++
T Consensus       255 y~el~~~a~~la~~-l---~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~  330 (642)
T COG1020         255 YAELDARANRLARL-L---ISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLT  330 (642)
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEe
Confidence            68999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      .........              .... +.++...                     ..............+++.+|++||
T Consensus       331 ~~~~~~~~~--------------~~~~-~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ayiiyt  374 (642)
T COG1020         331 QAHLRVDDV--------------GLPG-LALDDAL---------------------SEIPDTDPIPQALLGDALAYIIYT  374 (642)
T ss_pred             ccccccccc--------------cCCc-ccccccc---------------------ccCCccCcccccCCCCCeEEEEEc
Confidence            843221100              0010 1111110                     000000000112355899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc---cCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~  237 (526)
                      |||||.||||..+|+++.+...+....+.++..++++...++.+..+....+..+..|+.++....   .++..+...+.
T Consensus       375 sgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~  454 (642)
T COG1020         375 SGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLE  454 (642)
T ss_pred             cCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHH
Confidence            999999999999999999877777777899999999999999888888889999999998888853   67899999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCC-CCCCCceeeEeccCCCCCHHHHHHHhhc---CCeeecccccccCCCCccccccC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDT-ILPLTNVVNVNTAGAPPPPSLLFAMSQK---GFRITHTYGLTELTGPASVCAWK  313 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~-~~~l~~lr~~~~~Ge~l~~~~~~~~~~~---~~~i~~~YG~tE~~~~~~~~~~~  313 (526)
                      ++++|++..+|..+..+........ ......+|.+++|||.++.++...+...   ...+++.||.||+..........
T Consensus       455 ~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~  534 (642)
T COG1020         455 AQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPIS  534 (642)
T ss_pred             HcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcc
Confidence            9999999999999999988722211 1113459999999999999999988743   46899999999965544433222


Q ss_pred             CCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCC-eeecC
Q 009756          314 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG-WFHSG  392 (526)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g-~~~tG  392 (526)
                      ....        . ...+|.|+++. .+.|+|. .++++|.+  ..||+++.|.++..||++++..+..+|... +|+||
T Consensus       535 ~~~~--------~-~~piG~p~~n~-~~~ild~-~~~~~p~g--v~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tg  601 (642)
T COG1020         535 AELE--------S-RVPIGRPVANT-QLYILDQ-GLRPLPLG--VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTG  601 (642)
T ss_pred             cccC--------C-CCCcceeeCCC-eEEEECC-CCCcCCCC--CCeeeEECCcchhhhhcCChhhhHHHhhhccCccCC
Confidence            1100        0 46899999997 6999994 49999999  789999999999999999999999999875 99999


Q ss_pred             ceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCC
Q 009756          393 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP  433 (526)
Q Consensus       393 D~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~  433 (526)
                      |++++.+||.+.++||.|+++|++|.++.+.+||..+.++|
T Consensus       602 D~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         602 DLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             CeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence            99999999999999999999999999999999999998764

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=100.00  E-value=7.4e-31  Score=261.83  Aligned_cols=322  Identities=17%  Similarity=0.108  Sum_probs=217.3

Q ss_pred             CCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHH-HHHHhhcceeeeec
Q 009756          150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYT-WSLAALCGTSICLR  225 (526)
Q Consensus       150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~g~~~~~~~  225 (526)
                      ..++++.+++||||||.||++.+||.++..........   .+++++|+++...+..+..+.... ..+...|++++...
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~  163 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG  163 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence            45688899999999999999999999987766554443   488899999998887766554333 33445555544322


Q ss_pred             ccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCC-CCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccC
Q 009756          226 QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTEL  303 (526)
Q Consensus       226 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~  303 (526)
                        .....++.+++++++.++++|+.+..|+......... ...++|.+++|||++++++++.+. .+|+++++.||+||+
T Consensus       164 --~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~  241 (445)
T TIGR03335       164 --KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEG  241 (445)
T ss_pred             --chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhh
Confidence              2345789999999999999999988887654332221 146899999999999999998887 569999999999998


Q ss_pred             CCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCcccc-----ccccCChh
Q 009756          304 TGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVM-----KGYLKNPK  378 (526)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~-----~gy~~~~~  378 (526)
                      + ++..|...               .....+.+.+ .++|+|++++.+++.|  +.|||++++-...     ...+    
T Consensus       242 ~-~~~~c~~~---------------~g~h~~~d~~-~vEIvDp~~~~~vp~G--e~GELvvT~L~~~~~r~~~Pli----  298 (445)
T TIGR03335       242 T-MCGECQAV---------------AGLHVPEDLV-HLDVYDPRHQRFLPDG--ECGRIVLTTLLKPGERCGSLLI----  298 (445)
T ss_pred             h-heEEecCC---------------CCccccCCce-EEEEEcCCCCCCCcCC--CceEEEEEecCCCCccCCceEE----
Confidence            5 33333211               0111122223 5899999988889988  8999999875421     1122    


Q ss_pred             hhhhhhcCCeeecCceeEEcC-C----c----eEEEeccccceeeeCCeeechHHHHHHHHcC---CCee-eeEEEEcCC
Q 009756          379 ANEEAFANGWFHSGDLAVKHP-D----N----YIEIKDRLKDVIISGGENISSVEVEKVLYLH---PLVL-EAAVVARPD  445 (526)
Q Consensus       379 ~~~~~~~~g~~~tGD~~~~~~-~----g----~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~---~~v~-~~~v~~~~~  445 (526)
                               .|+|||++++.. +    |    ++...||.||+++++|.+|+|.+||++|.++   +++. +++++....
T Consensus       299 ---------RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~  369 (445)
T TIGR03335       299 ---------NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGE  369 (445)
T ss_pred             ---------EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecC
Confidence                     399999999732 2    2    2445699999999999999999999999994   5554 455554443


Q ss_pred             CCCCceeEEEEEecCCCchhhhhhhHHHHHHH-------HHhcCCCccCCcEEEecc---ccCC-CCccccH
Q 009756          446 ERWGESPCAFVTLKPEADELDKGKLAEDVSKF-------CRAKMPSYWVPKSVVFAA---LPKS-ATGKIQK  506 (526)
Q Consensus       446 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-------l~~~l~~~~~p~~~~~~~---lP~t-~~GKv~r  506 (526)
                      ....+.+.+.++..+.... +..+..+++.+.       |.+.+....+...+.+++   ||++ ..||..|
T Consensus       370 ~~~~~~~~v~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r  440 (445)
T TIGR03335       370 EEGEITLRVSLECEDKDNC-SIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR  440 (445)
T ss_pred             CCCCceEEEEEEecCcccc-hHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence            3323356666676554321 111122223322       111111222223444544   9998 4698776

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.98  E-value=2e-31  Score=275.47  Aligned_cols=471  Identities=19%  Similarity=0.175  Sum_probs=308.6

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccC----hHH---HHHHHhhc
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN----ATV---VAFILSHA   73 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~----~~~---l~~~l~~~   73 (526)
                      |++....++.+|.. |   ...|...|+.|++++..+.++++..++.|+.|..+.+++|.++    +++   +.+.+...
T Consensus        72 ~r~~~~~~n~~~q~-l---~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~  147 (1032)
T KOG1178|consen   72 YRLIRLLSNIIAQF-L---VSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSV  147 (1032)
T ss_pred             hhhhhcccchhHHH-h---hhcccccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheec
Confidence            34555667777888 7   7889899999999999999999999999999999999999999    332   11222211


Q ss_pred             CceEEEEccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCC
Q 009756           74 SSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQ  153 (526)
Q Consensus        74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  153 (526)
                      ...++       ..+ ++.....+   .......+...                 ...|..+....+..  .....-++.
T Consensus       148 ~~~i~-------~~l-~i~~~~~~---~~~~~~sv~~~-----------------~~~f~~~~~~~~~r--~~~~~~~ds  197 (1032)
T KOG1178|consen  148 ELEIV-------RRL-NIIDILLN---SLFPKLSVETI-----------------ADSFQMVLHNEDTR--EIRVGGNDS  197 (1032)
T ss_pred             cceeh-------hhh-hhHHHHhh---ccccccchhhc-----------------cchhhhhhccCCCc--ceeeecccc
Confidence            11111       111 11110000   00000000000                 01111111111111  111235667


Q ss_pred             eEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcce-eeeec---ccCH
Q 009756          154 SIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGT-SICLR---QVTA  229 (526)
Q Consensus       154 ~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~-~~~~~---~~~~  229 (526)
                      .+++.||||+||.||+|..+|..+.+...+....+..+..+++-.....+.+......+.+++..+. +.++.   ..++
T Consensus       198 ~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~  277 (1032)
T KOG1178|consen  198 TALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTP  277 (1032)
T ss_pred             cceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCccch
Confidence            8999999999999999999999999999999888888888876434444344344444445555554 44442   2347


Q ss_pred             HHHHHHHHhcCceeeeccHHHHHHHHccCCCC---------CCC---CCCceeeEeccCCCCCHHHHHHHhhc---CCee
Q 009756          230 KAVYTAIATHGVTHFCAAPVVLNAIANASPED---------TIL---PLTNVVNVNTAGAPPPPSLLFAMSQK---GFRI  294 (526)
Q Consensus       230 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~---------~~~---~l~~lr~~~~~Ge~l~~~~~~~~~~~---~~~i  294 (526)
                      ..+.+.+++++++..+.+|+..++++......         ..+   ..+.|+....+||+..-.+...+...   ++..
T Consensus       278 ~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~  357 (1032)
T KOG1178|consen  278 GQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFG  357 (1032)
T ss_pred             hhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeee
Confidence            89999999999999999999988877665442         001   13478999999999998888855422   3333


Q ss_pred             ecccccccCCCCccccccCCCCCCCCcccccccc---cccceeeeecCCceeecCCCCCccCCC--CCceEEEEEcCccc
Q 009756          295 THTYGLTELTGPASVCAWKPEWDSLPFETQARLN---ARQGVRTICLDGLDVIDARTNQPVPAD--GKTIGEIVMRGSCV  369 (526)
Q Consensus       295 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~G~~~~~~~~~~v~d~~~g~~~~~~--~~~~Gel~v~~~~~  369 (526)
                      .. |+.++..+..+...+.+....+........+   ...|...    ..++.... +.+.+.+  .++.|+-...+..+
T Consensus       358 ~~-y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~----~~~~~~~~-~~~~~~~v~~~~l~~~~~~~~~~  431 (1032)
T KOG1178|consen  358 LP-YLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLT----VLESLYRA-GGEGEGGVGKGCLGAEQNLSSWV  431 (1032)
T ss_pred             ec-ccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCc----ceeeeecc-CcccCCcccceeeccccccccee
Confidence            33 8888887777665544332211111100000   0011111    12222221 2222221  11222222233344


Q ss_pred             cccccCChhhhhhhh------cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEc
Q 009756          370 MKGYLKNPKANEEAF------ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR  443 (526)
Q Consensus       370 ~~gy~~~~~~~~~~~------~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~  443 (526)
                      ..|| ..++.....+      .+.+|+|||+|+..+.|.+.+.||.|++||.+|.++...+|+..+..+|.|.++.+...
T Consensus       432 ~~g~-~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~  510 (1032)
T KOG1178|consen  432 VDGY-STPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLAR  510 (1032)
T ss_pred             eccc-cchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeee
Confidence            4442 2222222222      24589999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          444 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       444 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      .+...++.+.+|++........    ....|+.++.++|+.|++|..++.++ +|+|++|||++++|.+...+.
T Consensus       511 ~~~~~~~~l~aFvv~~~~~~~~----~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~~~s~~  580 (1032)
T KOG1178|consen  511 ENSTVGQTLLAFVVERGGSKSV----LIRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKALLEYNSKL  580 (1032)
T ss_pred             eccccCceEEEEEeccCCCCch----hHHHHHHhhcccccceecceEEEEhhhCCcCCCCCcChhhhhhhhhhh
Confidence            9999899999999998776653    57889999999999999999888888 999999999999999844433

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.97  E-value=3.6e-29  Score=236.00  Aligned_cols=321  Identities=19%  Similarity=0.227  Sum_probs=238.1

Q ss_pred             CCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHh---CCcCCcEEEEeccc-ccchhhHHHHHHHhhcceeeeec
Q 009756          150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIW---GMNEGAVFLWTLPM-FHGNGWSYTWSLAALCGTSICLR  225 (526)
Q Consensus       150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~~~~  225 (526)
                      ..++...|-.||||||+|+.+.+|+..+..++....+.+   +...+|++...... .+..|+....++.-.|.+++...
T Consensus        88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~  167 (438)
T COG1541          88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPIS  167 (438)
T ss_pred             cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccC
Confidence            445666788999999999999999999887777766654   67889988776553 22233344444455666666666


Q ss_pred             ccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCC--CCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeeccccccc
Q 009756          226 QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT--ILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTE  302 (526)
Q Consensus       226 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~--~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE  302 (526)
                      .-+....+++++++++|++.++|+.+..|+.......  .. -.++|.+++|+|+++++.++.+. .+|+.+++.||+||
T Consensus       168 ~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~-~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE  246 (438)
T COG1541         168 GGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPD-KLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTE  246 (438)
T ss_pred             CccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChh-hcceeEEEEecccCCHHHHHHHHHHhCCceeecccccc
Confidence            6688999999999999999999999999999877663  22 46899999999999999999999 77999999999999


Q ss_pred             CCCCc-cccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhh
Q 009756          303 LTGPA-SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE  381 (526)
Q Consensus       303 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~  381 (526)
                      ..+.. ..|.....               .....+.. .++|+||++|+.++.|  +.|||+++.-.-            
T Consensus       247 ~~g~g~~eC~~~~g---------------lhi~eD~~-~~Ei~dP~t~e~l~dg--e~GelV~T~L~~------------  296 (438)
T COG1541         247 GFGPGAGECTERNG---------------LHIWEDHF-IFEIVDPETGEQLPDG--ERGELVITTLTK------------  296 (438)
T ss_pred             ccCCcccccccccC---------------CCcchhhc-eeeeecCCcCccCCCC--CeeEEEEEeccc------------
Confidence            97763 44543321               11112223 6999999999999999  789999987431            


Q ss_pred             hhhcCCeeecCceeEEcCC----ce-----EEEeccccceeeeCCeeechHHHHHHHHcCCCee-eeEEEEcCCCCCCce
Q 009756          382 EAFANGWFHSGDLAVKHPD----NY-----IEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL-EAAVVARPDERWGES  451 (526)
Q Consensus       382 ~~~~~g~~~tGD~~~~~~~----g~-----~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~-~~~v~~~~~~~~~~~  451 (526)
                      ..+.--.|+|||+..+.++    |+     ..+.||+||++.+.|.+|+|..||..+.+.+.+. +.+++... .+..+.
T Consensus       297 ~~~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~  375 (438)
T COG1541         297 EGMPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDE  375 (438)
T ss_pred             cCcceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCce
Confidence            1111124999999999864    32     4589999999999999999999999999999999 78888777 555678


Q ss_pred             eEEEEEecCCCc-hhhhhhhHHHHHHHHHhcCCCccCCcEEEecc---ccCCCCccccH
Q 009756          452 PCAFVTLKPEAD-ELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA---LPKSATGKIQK  506 (526)
Q Consensus       452 ~~~~v~~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~---lP~t~~GKv~r  506 (526)
                      +.+.|+..++.. .++..+..+++.+.+...+.   ....+.++.   +|||.. |..|
T Consensus       376 L~V~vE~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~v~~v~~g~l~r~~~-K~kr  430 (438)
T COG1541         376 LTVRVELENEAEELEDERRLAKKLIKNIKSELG---VRVEVELVEPGELPRTEG-KAKR  430 (438)
T ss_pred             EEEEEEecCcccchHHHHHHHHHHHHHHHhhcC---CceEEEEEeccceecccC-ceeE
Confidence            888889887522 22222223455555555443   333444443   999984 5443

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.97  E-value=1.6e-28  Score=246.19  Aligned_cols=481  Identities=12%  Similarity=0.117  Sum_probs=331.3

Q ss_pred             CccchhhhhhcccccccCccCC-CCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCcc------ChHHHHHHHhhc
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLF-PSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRL------NATVVAFILSHA   73 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~-g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~------~~~~l~~~l~~~   73 (526)
                      |++|..++.++|.+ |   +.. -+++||.|++++|+++|++++++||+.+|++++|+.|..      ....+..+++.+
T Consensus       804 w~~f~krva~i~~~-l---~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~  879 (1363)
T KOG3628|consen  804 WAQFHKRVARIAEY-L---QDKGHLKAGDHVVLMYPPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVY  879 (1363)
T ss_pred             HHHHHHHHHHHHHH-H---HhcccCCCCCeEEEEcCChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHh
Confidence            67899999999999 8   754 689999999999999999999999999999999998853      336788999999


Q ss_pred             CceEEEEccchHHHHHHH--HHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCC--CcCCCCCC
Q 009756           74 SSAVVIVDQEFFSLAEEA--LKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP--EFAWKPPE  149 (526)
Q Consensus        74 ~~~~vi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~  149 (526)
                      ++.+|+++......++.-  .....+.     .++.++.+++...              ++..-...-..  ...++...
T Consensus       880 kv~ailv~~~v~~lLrsr~~s~~~~~s-----~~p~i~~~~~~~~--------------t~~k~~~~~~k~~~~~~~g~~  940 (1363)
T KOG3628|consen  880 KVAAILVDQKVLKLLRSREASAHVDQS-----AIPLILVLPKLPE--------------TIRKRKKNIKKLNTPTPPGLN  940 (1363)
T ss_pred             hhheEEecHHHHHHHhhhhHHHHhhhh-----cchhhhcccccch--------------hhhhhhhhhhccCCCCCcccc
Confidence            999999999877665443  1111110     2445554444310              11111111111  11112225


Q ss_pred             CCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhH-HHHHHHhhcceeeeecc--
Q 009756          150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSICLRQ--  226 (526)
Q Consensus       150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~--  226 (526)
                      +.+.+|++-+.--++|.--++.++|+++++.++.....+.+.+..-++.+.+++...|+. .++...+.|...+.++.  
T Consensus       941 ~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~ 1020 (1363)
T KOG3628|consen  941 NKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMD 1020 (1363)
T ss_pred             CCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHH
Confidence            678899998888899999999999999999999999999888887777777777777764 45556666777666643  


Q ss_pred             --cCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCce-----eeEeccCC-CCCHHHHHHHh----hcCC--
Q 009756          227 --VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV-----VNVNTAGA-PPPPSLLFAMS----QKGF--  292 (526)
Q Consensus       227 --~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l-----r~~~~~Ge-~l~~~~~~~~~----~~~~--  292 (526)
                        -++..++..++++++.-++.+-..+..+.+........ ++..     ..+++-.+ +-...+.+.+.    +.|+  
T Consensus      1021 l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~en-l~~~gnn~s~s~vv~~~~RPr~ali~sf~klfa~igLsp 1099 (1363)
T KOG3628|consen 1021 LENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVEN-LSKRGNNTSSSIVVPAEERPRIALIASFKKLFAAIGLSP 1099 (1363)
T ss_pred             hhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccch-hhhhhcccccceeeecCCccHHHHHHHHHHHHHHcCCCh
Confidence              47889999999999999999988888877654333221 2211     13333333 33333333333    3333  


Q ss_pred             -eeecccccccCCCCccccccCCCCCCCCccc----------cc------ccccccceeeeecCCceeecCCCCCccCCC
Q 009756          293 -RITHTYGLTELTGPASVCAWKPEWDSLPFET----------QA------RLNARQGVRTICLDGLDVIDARTNQPVPAD  355 (526)
Q Consensus       293 -~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~----------~~------~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~  355 (526)
                       .+...|++.=.-.+++....+++-.....+.          .+      .....-|..++++ ++.|+++++..++..|
T Consensus      1100 ~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~-~i~IvnPEtk~pc~dg 1178 (1363)
T KOG3628|consen 1100 RAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYT-DIAIVNPETKGPCRDG 1178 (1363)
T ss_pred             hhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccc-eeEEeCCccccccccC
Confidence             2555666665444444322222110000000          00      0001227777778 5999999999999888


Q ss_pred             CCceEEEEEcCccccccccCChh-hhhhhh----------cCCeeecCceeEEcC------C----ceEEEeccccceee
Q 009756          356 GKTIGEIVMRGSCVMKGYLKNPK-ANEEAF----------ANGWFHSGDLAVKHP------D----NYIEIKDRLKDVII  414 (526)
Q Consensus       356 ~~~~Gel~v~~~~~~~gy~~~~~-~~~~~~----------~~g~~~tGD~~~~~~------~----g~~~~~GR~~d~i~  414 (526)
                        +.||+|+.|.+.+.+|++..+ .....|          ..+|-||||+|++.-      .    ..+|++|-.++.+.
T Consensus      1179 --e~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlE 1256 (1363)
T KOG3628|consen 1179 --ELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLE 1256 (1363)
T ss_pred             --CcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceee
Confidence              899999999998887765421 222222          134999999999853      1    35899999999999


Q ss_pred             eCCeeechHHHHHHHHc-CCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHH-HhcCCCccCCc-EE
Q 009756          415 SGGENISSVEVEKVLYL-HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFC-RAKMPSYWVPK-SV  491 (526)
Q Consensus       415 ~~G~~v~~~~ie~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l-~~~l~~~~~p~-~~  491 (526)
                      ++|.+.+|.+||..+++ |+.|.+|+|+.+..     .+++.++...+.       ....|.-.+ ...|..|.+.. .+
T Consensus      1257 l~GL~h~p~DIE~TV~~vH~~I~~cavF~~~g-----lvVvviE~~gq~-------~~~~LvPlIv~~vL~eH~iI~dvV 1324 (1363)
T KOG3628|consen 1257 LNGLRHFPSDIETTVERVHPSIGGCAVFQATG-----LVVVVIECHGQQ-------ELADLVPLIVNVVLEEHYIILDVV 1324 (1363)
T ss_pred             ecCcccCcchHHHHHHHhcccccceeeEeeCC-----eEEEEEEecCch-------hHhhhhHHHHHHHHhhcceEEEEE
Confidence            99999999999998865 79999999998855     366666666521       234444433 44566666554 45


Q ss_pred             Eecc---ccCCCCccccHHHHHHHHHhcCCcc
Q 009756          492 VFAA---LPKSATGKIQKHLLRAKAKEMGPVK  520 (526)
Q Consensus       492 ~~~~---lP~t~~GKv~r~~l~~~~~~~~~~~  520 (526)
                      .|++   +|+++.|-.+|..+++.+...+..-
T Consensus      1325 ~fV~~G~~p~~~~gEK~R~~I~~~w~~~kL~~ 1356 (1363)
T KOG3628|consen 1325 AFVDKGVFPRNSRGEKQRAHILDSWLAGKLDP 1356 (1363)
T ss_pred             EEecCCccccCCchhhHHHHHHHHHHhcccce
Confidence            5777   9999999999999999998776543

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.89  E-value=1.1e-22  Score=183.24  Aligned_cols=196  Identities=12%  Similarity=0.073  Sum_probs=147.0

Q ss_pred             CccchhhhhhcccccccCccC-CCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLL-FPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~-~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.++++++|++ |   ++ .|+++||+|+|+++|++++++++|||+++|++++|++             .+++++++
T Consensus        30 y~~l~~~~~~~a~~-L---~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v   92 (227)
T TIGR03089        30 AATLANWVAKTANL-L---QDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVLAG-------------DPDADVVV   92 (227)
T ss_pred             HHHHHHHHHHHHHH-H---HHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEeCC-------------CCCCCEEE
Confidence            78999999999999 9   87 7999999999999999999999999999999999995             68999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~  159 (526)
                      ++++......     .         ...++.+......... ......+..+|.+.+........+.....++|++.++|
T Consensus        93 ~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~a~l~y  157 (227)
T TIGR03089        93 TGPDRLAAAA-----G---------SGEVVALSLDPLGRRV-AGELPPGVIDFAPEVRVHGDQFAPYEPPDATAPALVAG  157 (227)
T ss_pred             eCcchhhhcc-----c---------CCceEEEeccccccCC-CCCCCCcccchhhhhhccCCCCCCCCCCCCCcceeeec
Confidence            9987766532     0         1233333211100000 00012234567766654333322221345689999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhH-HHHHHHhhcceeeeecccCHHHHHHHHHh
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSICLRQVTAKAVYTAIAT  238 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~i~~  238 (526)
                      |||+         +|.+++...    ...+++++|+++ ..|++|.+|+. ..+.++..|+++++++++++..+++.|++
T Consensus       158 Tsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~i~~  223 (227)
T TIGR03089       158 GGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQIAET  223 (227)
T ss_pred             cccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecCCCHHHHHHHHHh
Confidence            9976         566655544    556789999999 99999999986 46677788999999999999999999999


Q ss_pred             cCce
Q 009756          239 HGVT  242 (526)
Q Consensus       239 ~~~t  242 (526)
                      +|||
T Consensus       224 ~~vT  227 (227)
T TIGR03089       224 ERVT  227 (227)
T ss_pred             hcCC
Confidence            9987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.86  E-value=3.2e-21  Score=183.34  Aligned_cols=119  Identities=20%  Similarity=0.248  Sum_probs=108.4

Q ss_pred             hhcCCeeecCceeEE-cCCceEEEeccccceeeeCC---eeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEe
Q 009756          383 AFANGWFHSGDLAVK-HPDNYIEIKDRLKDVIISGG---ENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTL  458 (526)
Q Consensus       383 ~~~~g~~~tGD~~~~-~~~g~~~~~GR~~d~i~~~G---~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  458 (526)
                      .+.+|||+|||+|++ ++||++++.||.+     +|   .+|+|. ||.+|.+||+|.+|+|++++++.+|+.++|+|+.
T Consensus       205 ~~~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~  278 (365)
T PRK09188        205 LPSRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEA  278 (365)
T ss_pred             cccCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEE
Confidence            346899999999998 6999999999998     78   799999 9999999999999999999999999999999997


Q ss_pred             cCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          459 KPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       459 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                      ....       +.++++++|+++|+. ++|+.+.+++ ||+|++||++|+.|++++.+
T Consensus       279 ~~~~-------~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~  328 (365)
T PRK09188        279 ELPA-------DEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMN  328 (365)
T ss_pred             CCCC-------CHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhc
Confidence            6422       457899999999999 9999999988 99999999999999998743

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.83  E-value=2.7e-18  Score=167.33  Aligned_cols=254  Identities=16%  Similarity=0.117  Sum_probs=164.9

Q ss_pred             eEEEEecCCCCCCccceeecchhHHHHHHhhHh---HhCCcCCcEEEEecccccchhhHHHHHHHhhcce-eeee-cccC
Q 009756          154 SIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGT-SICL-RQVT  228 (526)
Q Consensus       154 ~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~-~~~~-~~~~  228 (526)
                      -..+..||||||.|-.+..+.............   ..++..++++....   +..+..+..  ...... ...+ -..+
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~---~~~~~ly~~--~~~~~~~~~~~~l~~~  175 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFL---RADNNLYQS--VNNRWISLDFFDLLAP  175 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEE---ccChhHHHH--HHhccceeeecCCCcC
Confidence            456778999999999999999865433322222   12455666655442   111111111  111111 1111 1246


Q ss_pred             HHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCc
Q 009756          229 AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPA  307 (526)
Q Consensus       229 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~  307 (526)
                      .+..++.|++++|+++.++|+.+..|++........  ..++.++++||.++++.++.++ .+|+++++.||+|| |.++
T Consensus       176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~--~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la  252 (430)
T TIGR02304       176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT--IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLA  252 (430)
T ss_pred             HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC--CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheE
Confidence            788999999999999999999999999976554433  4789999999999999999998 67999999999999 6666


Q ss_pred             cccccCCCCCCCCcccccccccccceeeeecCCce--eecCCCCCccCCCCCceEEEEEcCcc-ccccccCChhhhhhhh
Q 009756          308 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSC-VMKGYLKNPKANEEAF  384 (526)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~--v~d~~~g~~~~~~~~~~Gel~v~~~~-~~~gy~~~~~~~~~~~  384 (526)
                      +.|.++. ++..+               ..+ .+|  ++|++ ++         +..++|+-. -....+          
T Consensus       253 ~eC~~g~-lHl~e---------------d~~-~vE~~ivD~~-~~---------~~~ViT~L~n~~~PlI----------  295 (430)
T TIGR02304       253 STCRCGT-LHLNE---------------DLV-HIEKQYLDEH-KR---------FVPIITDFTRTTQPIV----------  295 (430)
T ss_pred             EecCCCC-EEEcc---------------ccE-EEEeeEECCC-Cc---------eEEEEecCCCccceEE----------
Confidence            6664321 11100               001 244  78876 32         344555432 111111          


Q ss_pred             cCCeeecCceeEEcCC----ce----E-EEeccccceeee---CCe--eechHHHHHHHH-cCCCeeeeEEEEcCCCCCC
Q 009756          385 ANGWFHSGDLAVKHPD----NY----I-EIKDRLKDVIIS---GGE--NISSVEVEKVLY-LHPLVLEAAVVARPDERWG  449 (526)
Q Consensus       385 ~~g~~~tGD~~~~~~~----g~----~-~~~GR~~d~i~~---~G~--~v~~~~ie~~l~-~~~~v~~~~v~~~~~~~~~  449 (526)
                         .|+|||++.+.++    |+    + .+.||.+|++++   +|.  .++|..++..+. ..++|.++++++....   
T Consensus       296 ---RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~~~---  369 (430)
T TIGR02304       296 ---RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTGSA---  369 (430)
T ss_pred             ---eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEccCC---
Confidence               3999999888544    32    3 388999999984   454  459999988754 5789999999876433   


Q ss_pred             ceeEEEEEec
Q 009756          450 ESPCAFVTLK  459 (526)
Q Consensus       450 ~~~~~~v~~~  459 (526)
                       .+.+.++..
T Consensus       370 -~l~v~~~~~  378 (430)
T TIGR02304       370 -QLELIADCE  378 (430)
T ss_pred             -eEEEEEEeC
Confidence             366666553

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.81  E-value=2.4e-18  Score=173.85  Aligned_cols=477  Identities=14%  Similarity=0.063  Sum_probs=307.9

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCc--hhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNV--PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVV   78 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v   78 (526)
                      |..+..++.++|+..|   -+.|+.++|+|.+++..+  +++++..++|..+|.+++|+.+..+.+++..+++....+++
T Consensus       127 wdkl~~rA~k~a~~~l---~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~  203 (1363)
T KOG3628|consen  127 WDKLLNRAEKVAHVEL---NKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVA  203 (1363)
T ss_pred             HHHHHHHHHhhccHHh---hccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceE
Confidence            4567889999999426   778999999999999988  79999999999999999999999999999999999999999


Q ss_pred             EEccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEE
Q 009756           79 IVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALG  158 (526)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~  158 (526)
                      ++.......+..-.....       -.+.+-+.+....          .+....+         ....+..+-. ..+|-
T Consensus       204 l~t~a~~r~~~~~~~~~s-------~~k~v~~w~t~~~----------k~~~~~~---------k~~~P~~~~~-~~~i~  256 (1363)
T KOG3628|consen  204 LTTEAGERAFINDNSPVS-------LAKAVAWWKTNDF----------KGNYTKD---------KIKKPRMQLP-YGYIE  256 (1363)
T ss_pred             eehhhhHHHhhhccCccc-------HHHHHHhhhcccc----------cceeehh---------hccCCceeee-eEEEE
Confidence            998876654432210000       0000000000000          0000000         0000111222 78899


Q ss_pred             ecCCCCCCccceeecchhHHHHHHhhH--------------------hHhCCcCCcEEEEecccccchhhHH-HHHHHhh
Q 009756          159 YTSGTTASPKGVVVSHRGAYLMSLNGA--------------------LIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAAL  217 (526)
Q Consensus       159 ~TSGsTG~pK~v~~t~~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~  217 (526)
                      ||.+++|.--+++++|. +..+.+...                    ..++....+.++....+....|+.. .+.++..
T Consensus       257 ~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfs  335 (1363)
T KOG3628|consen  257 FTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFS  335 (1363)
T ss_pred             EeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhc
Confidence            99999999999999997 333222111                    1123445566666666666666654 4556677


Q ss_pred             cceeeeecc---cCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCC----------CCCCceeeEeccCCCCCHHHH
Q 009756          218 CGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI----------LPLTNVVNVNTAGAPPPPSLL  284 (526)
Q Consensus       218 g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~----------~~l~~lr~~~~~Ge~l~~~~~  284 (526)
                      |.|.+.+++   ..+..+...+.+++.+++..--..++...........          .+++++|.+++..+.+.++..
T Consensus       336 g~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~  415 (1363)
T KOG3628|consen  336 GYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQ  415 (1363)
T ss_pred             CceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeEEeeeecchHHH
Confidence            888888876   6788899999999999998876666555543322111          248899999999999999887


Q ss_pred             HHHhhc-----CCe-----ee-------------cccccccCCCCccccccCC---------------CCCCCCccccc-
Q 009756          285 FAMSQK-----GFR-----IT-------------HTYGLTELTGPASVCAWKP---------------EWDSLPFETQA-  325 (526)
Q Consensus       285 ~~~~~~-----~~~-----i~-------------~~YG~tE~~~~~~~~~~~~---------------~~~~~~~~~~~-  325 (526)
                      +.....     |..     .+             ..=+++|.+..........               ........... 
T Consensus       416 ~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~  495 (1363)
T KOG3628|consen  416 EIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDD  495 (1363)
T ss_pred             HHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhh
Confidence            765422     221     11             1112233332222211100               00000000000 


Q ss_pred             ---ccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-------------CCee
Q 009756          326 ---RLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-------------NGWF  389 (526)
Q Consensus       326 ---~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------------~g~~  389 (526)
                         .....+|...++--.+.|+++++.+.+..+  ++|||||.+++...+||..+..+...|.             ..+.
T Consensus       496 is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~--eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~Fm  573 (1363)
T KOG3628|consen  496 ISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTD--EVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFM  573 (1363)
T ss_pred             hhhcCccccceecccceEEEEeCCCcccccccC--cceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhh
Confidence               001123444444325788999989999988  8999999999999999998888777773             1289


Q ss_pred             ecCceeEEcCCceEEEeccccceee-eCCeeechHH----------HHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEe
Q 009756          390 HSGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVE----------VEKVLYLHPLVLEAAVVARPDERWGESPCAFVTL  458 (526)
Q Consensus       390 ~tGD~~~~~~~g~~~~~GR~~d~i~-~~G~~v~~~~----------ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  458 (526)
                      |||-+|++++++ ++++|-.+|.+. +.|.+.+..+          ++-+++..+.|.++.++-      .|++++.++-
T Consensus       574 RtGLlGFv~~gk-i~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~------~E~~~Vv~~e  646 (1363)
T KOG3628|consen  574 RTGLLGFVHNGK-IYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE------DEHIVVVVLE  646 (1363)
T ss_pred             hhcceeeeeCCe-EEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee------cceEEEEEEe
Confidence            999999999655 555554455544 8888765544          445566778999999886      3457777777


Q ss_pred             cCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEE-ecc---ccCCCCccccHHHHHHHHHhcCCcc
Q 009756          459 KPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV-FAA---LPKSATGKIQKHLLRAKAKEMGPVK  520 (526)
Q Consensus       459 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~-~~~---lP~t~~GKv~r~~l~~~~~~~~~~~  520 (526)
                      .+...+++.-+...   +.++--..-|++-..++ +++   ||||+-|-+.-.+.+++|.+.+...
T Consensus       647 sP~a~e~~~~q~~~---~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~G~L~~  709 (1363)
T KOG3628|consen  647 SPDATEENSFQWMS---RVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLEGSLPP  709 (1363)
T ss_pred             CcchhhhhhhhHHH---HHHHHHHHHhcccceEEEEeccccCCCccccccccHHHHHHHHcCCCCc
Confidence            77765554333333   33333334555544433 443   9999999999999999999877643

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=99.24  E-value=2.3e-11  Score=88.23  Aligned_cols=69  Identities=49%  Similarity=0.864  Sum_probs=59.5

Q ss_pred             HHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEec---c-ccCC
Q 009756          424 EVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA---A-LPKS  499 (526)
Q Consensus       424 ~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~---~-lP~t  499 (526)
                      |||+++.++|+|.+|+|++.+++..|+.+++++++     .      .++|+++++++|++|++|+.+.++   + ||+|
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-----~------~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t   69 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-----D------EEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRT   69 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-----H------HHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBE
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-----e------ecccccchhhhCCCcceeeEEEEccccCcCCCC
Confidence            69999999999999999999999889999999998     1      289999999999999999544433   6 9999


Q ss_pred             CCcc
Q 009756          500 ATGK  503 (526)
Q Consensus       500 ~~GK  503 (526)
                      ++||
T Consensus        70 ~~GK   73 (73)
T PF13193_consen   70 PSGK   73 (73)
T ss_dssp             TTSS
T ss_pred             CCCC
Confidence            9998

...

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=99.04  E-value=1.5e-08  Score=96.99  Aligned_cols=226  Identities=19%  Similarity=0.224  Sum_probs=131.4

Q ss_pred             CCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHh---C-CcCC-cEEEEecccccc-hhhHH---HHHHHhhccee
Q 009756          151 EWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIW---G-MNEG-AVFLWTLPMFHG-NGWSY---TWSLAALCGTS  221 (526)
Q Consensus       151 ~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~---~-~~~~-~~~~~~~p~~~~-~~~~~---~~~~~~~g~~~  221 (526)
                      ++++..++.||||||.|--+.+.+..+..........+   . .... -.++...|-... ..+..   ........++.
T Consensus        88 ~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~~  167 (365)
T PF04443_consen   88 EEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGSR  167 (365)
T ss_pred             hhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCce
Confidence            45667789999999998666776665554443333322   2 2221 223333343221 11111   11111122233


Q ss_pred             eeec--ccCHHHHHHHH----HhcCceeeeccHHHHHHHHccCCCCCCC-CCC-ceeeEeccC------CCCCH-HHHHH
Q 009756          222 ICLR--QVTAKAVYTAI----ATHGVTHFCAAPVVLNAIANASPEDTIL-PLT-NVVNVNTAG------APPPP-SLLFA  286 (526)
Q Consensus       222 ~~~~--~~~~~~~~~~i----~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~-~lr~~~~~G------e~l~~-~~~~~  286 (526)
                      ..+.  .++.+.++..+    .+.++..+++.|.++-.+.......... .++ ..+.+-.||      +.+++ ++.+.
T Consensus       168 ~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~  247 (365)
T PF04443_consen  168 FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYAR  247 (365)
T ss_pred             eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHHH
Confidence            3332  35666666555    4577899999998666655443322221 033 345555665      45654 55566


Q ss_pred             Hhh-cCC----eeecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEE
Q 009756          287 MSQ-KGF----RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGE  361 (526)
Q Consensus       287 ~~~-~~~----~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Ge  361 (526)
                      +.+ +|+    ++++.||+||.....+.+....                  .++|..  +.|+|++|..+++.|  +.|-
T Consensus       248 l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~------------------~~~p~w--V~iRDp~tl~~~~~G--e~Gl  305 (365)
T PF04443_consen  248 LQEVFGVIPIENIYDMYGMTELNSQAYECGHGH------------------FHVPPW--VIIRDPETLEPLPPG--ETGL  305 (365)
T ss_pred             HHHHHCCCCHHHeeeeeeccccchhheeCCCCc------------------ccCCCe--EEEECCCCCcCCCCC--CeeE
Confidence            664 687    6999999999876555542211                  122222  677899999999998  7999


Q ss_pred             EEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCC--------ceEEEeccccc
Q 009756          362 IVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD--------NYIEIKDRLKD  411 (526)
Q Consensus       362 l~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~--------g~~~~~GR~~d  411 (526)
                      |.+-++.... |            .+..-|.|+|.+..+        .++.++||.+.
T Consensus       306 i~vidl~~~s-~------------p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~  350 (365)
T PF04443_consen  306 IQVIDLANTS-Y------------PGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG  350 (365)
T ss_pred             EEEEcccccC-C------------CcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence            9886664321 1            133679999988654        26899999884

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.61  E-value=5.6e-07  Score=91.51  Aligned_cols=103  Identities=19%  Similarity=0.196  Sum_probs=67.8

Q ss_pred             ceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcC--C--ceEEEeccccceeeeCCeeechHHHHHHHHcC-
Q 009756          358 TIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP--D--NYIEIKDRLKDVIISGGENISSVEVEKVLYLH-  432 (526)
Q Consensus       358 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~--~--g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~-  432 (526)
                      +.=||+++..   .|.|+             |+.||++++..  .  ..+.|+||.+..+.+.|++++-.+|+.++.+. 
T Consensus       356 ~~YelviTt~---~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~  419 (528)
T PF03321_consen  356 EEYELVITTN---SGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARAL  419 (528)
T ss_dssp             -EEEEEEEST---TS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHH
T ss_pred             CeEEEEEecc---cceee-------------eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHH
Confidence            4557888764   46665             99999999853  2  37999999999999999999999999999775 


Q ss_pred             ----CCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHhcC
Q 009756          433 ----PLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKM  482 (526)
Q Consensus       433 ----~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l  482 (526)
                          -.+.+..+..........+.+.++++...  .+    ..+.+.+.+.+.|
T Consensus       420 ~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~--~~----~~~~~~~~lD~~L  467 (528)
T PF03321_consen  420 QETGLELRDFTVAPDPSSGNPPHYVLFWELEGE--PD----DLEELAKALDESL  467 (528)
T ss_dssp             HCTT-EEEEEEEEEE--SSSSBEEEEEEEECS---HH----HHHHHHHHHHHCS
T ss_pred             HhcCCceeeEEEEeecccCCCCceEEEEEeCCC--ch----HHHHHHHHHHHHh
Confidence                44667777766433334567788888766  22    3344445555444

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=98.02  E-value=2.1e-05  Score=60.07  Aligned_cols=85  Identities=27%  Similarity=0.375  Sum_probs=56.7

Q ss_pred             CeeechHHHHHHHHcCCCee-eeEEEEcCCCCCCceeEEEEEecCCCch--hhhhhhHHHHHHHHHhcCCCccCCcEEEe
Q 009756          417 GENISSVEVEKVLYLHPLVL-EAAVVARPDERWGESPCAFVTLKPEADE--LDKGKLAEDVSKFCRAKMPSYWVPKSVVF  493 (526)
Q Consensus       417 G~~v~~~~ie~~l~~~~~v~-~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~l~~~l~~~l~~~~~p~~~~~  493 (526)
                      |.+|+|..||+++.++|++. +++++.... ...+.+.+.|+..++...  .+..+..+++.+.+++.+.-  .| .+.+
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~-~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv--~~-~V~l   76 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTRE-GGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGV--RP-EVEL   76 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEE-TTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS---E-EEEE
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcC-CCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCc--eE-EEEE
Confidence            78999999999999999999 666554434 457788888999887532  34445677888888887752  23 4554


Q ss_pred             cc---ccCCCCccccH
Q 009756          494 AA---LPKSATGKIQK  506 (526)
Q Consensus       494 ~~---lP~t~~GKv~r  506 (526)
                      ++   ||++ .||..|
T Consensus        77 v~~gtLpr~-~~K~~R   91 (96)
T PF14535_consen   77 VPPGTLPRS-EGKAKR   91 (96)
T ss_dssp             E-TT-S----SSSS-S
T ss_pred             ECCCCccCC-CCcceE
Confidence            43   9998 578765

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.84  E-value=0.00044  Score=70.83  Aligned_cols=69  Identities=12%  Similarity=0.120  Sum_probs=50.2

Q ss_pred             eecCceeEEcC----CceEEEeccccceeeeCCeeechHHHHHHHHc---C-----CCeeeeEEEEcCCCCCCceeEEEE
Q 009756          389 FHSGDLAVKHP----DNYIEIKDRLKDVIISGGENISSVEVEKVLYL---H-----PLVLEAAVVARPDERWGESPCAFV  456 (526)
Q Consensus       389 ~~tGD~~~~~~----~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~---~-----~~v~~~~v~~~~~~~~~~~~~~~v  456 (526)
                      |+.||..++..    .-.+.|+||.+..+.+.|++++-.+++.++.+   .     -.|.|..+.... .....+.++|.
T Consensus       410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~a~~~~~~~~~~v~eft~~~~~-~~~p~Hyvl~w  488 (597)
T PLN02249        410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVENASRLLAEQGTRVIEYTSYAET-KTIPGHYVIYW  488 (597)
T ss_pred             eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHHHHHHhhhcCceEEEeEEecCC-CCCCCceEEEE
Confidence            99999999864    35799999999999999999999999998876   2     224566663332 22233556666


Q ss_pred             Ee
Q 009756          457 TL  458 (526)
Q Consensus       457 ~~  458 (526)
                      ++
T Consensus       489 ei  490 (597)
T PLN02249        489 EL  490 (597)
T ss_pred             EE
Confidence            66

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.63  E-value=0.0079  Score=61.36  Aligned_cols=44  Identities=11%  Similarity=0.166  Sum_probs=38.2

Q ss_pred             eecCceeEEc----CCceEEEeccccceeeeCCeeechHHHHHHHHcC
Q 009756          389 FHSGDLAVKH----PDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH  432 (526)
Q Consensus       389 ~~tGD~~~~~----~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~  432 (526)
                      ||.||+.++.    ....+.|++|.+.+..+.|++.+-.++..++.+.
T Consensus       417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a  464 (606)
T PLN02247        417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA  464 (606)
T ss_pred             EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence            9999998764    4568999999999999999999999998888663

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.49  E-value=0.01  Score=60.50  Aligned_cols=44  Identities=14%  Similarity=0.154  Sum_probs=37.9

Q ss_pred             eecCceeEEc----CCceEEEeccccceeeeCCeeechHHHHHHHHcC
Q 009756          389 FHSGDLAVKH----PDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH  432 (526)
Q Consensus       389 ~~tGD~~~~~----~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~  432 (526)
                      |+.||+.++.    ....+.|++|.+.+..+.|++.+-.++..++.+.
T Consensus       423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a  470 (612)
T PLN02620        423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNA  470 (612)
T ss_pred             EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHH
Confidence            9999998864    4567999999999999999999999998887653

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=93.73  E-value=0.21  Score=48.84  Aligned_cols=89  Identities=12%  Similarity=0.040  Sum_probs=71.6

Q ss_pred             ccchhhhhhcccccccCccCCCCCCCCEEEEEcCCc--hhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            2 DQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNV--PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         2 ~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      .++...+..+|+. |   ...|..+||+|.....-+  ..-+-..+|+.++|++++|+.+. .-+.-..++++.++.+|.
T Consensus       113 ~D~~~wa~~~aR~-~---~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI~  187 (438)
T COG1541         113 KDIERWAELLARS-L---YSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVIA  187 (438)
T ss_pred             HHHHHHHHHHHHH-H---HHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEEE
Confidence            4567788899999 8   889999999988877622  12267789999999999999884 455667899999999999


Q ss_pred             EccchHHHHHHHHHHh
Q 009756           80 VDQEFFSLAEEALKMM   95 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~   95 (526)
                      +.+...-.+.+.+...
T Consensus       188 ~tps~~l~lae~~~~~  203 (438)
T COG1541         188 ATPSYLLYLAEEAEEE  203 (438)
T ss_pred             EChHHHHHHHHHHHHc
Confidence            9999887777766555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	526
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		3e-58
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		2e-44
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		4e-34
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		7e-28
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		7e-27
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		8e-27
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-26
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		1e-26
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-26
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		2e-26
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		2e-26
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-26
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		3e-26
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		2e-25
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		2e-25
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-25
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		4e-25
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		4e-25
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		5e-25
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		6e-25
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		7e-25
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		7e-24
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		1e-23
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		1e-23
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-22
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		2e-22
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		1e-20
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		5e-20
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		6e-20
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		5e-19
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		1e-18
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		1e-18
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		7e-17
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		3e-16
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-15
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		1e-14
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		3e-14
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		1e-13
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		2e-13
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		2e-13
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		3e-13
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		6e-13
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		1e-12
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		2e-12
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		3e-12
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		2e-10
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		8e-10
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		4e-09
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		7e-07
3fcc_A	512	Crystal Structure Of Dlta Protein In Complex With A		2e-06
3dhv_A	512	Crystal Structure Of Dlta Protein In Complex With D		3e-06
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		2e-05
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		3e-05
4gr4_A	469	Crystal Structure Of Slgn1deltaasub Length = 469		3e-04
3ite_A	562	The Third Adenylation Domain Of The Fungal Sidn Non		6e-04

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score =  222 bits (566), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 174/483 (36%), Positives = 243/483 (50%), Gaps = 44/483 (9%)
Query: 42  EAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEG 101
           EA F  P  GAVL++ N RL+   +A+IL+HA   V++ D     L E A++       G
Sbjct: 87  EAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE-AIR-------G 138
Query: 102 KLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTS 161
           +LKT    V+ DE      L Y  A G        E  DP    + PE    +  + YT+
Sbjct: 139 ELKTVQHFVVMDEKAPEGYLAYEEALG--------EEADP---VRVPER--AACGMAYTT 185
Query: 162 GTTASPKGVVVSHRGAYLMSLNGALIWG--MNEGAVFLWTLPMFHGNGWSYTWSLAALCG 219
           GTT  PKGVV SHR   L SL  +L+ G  ++E  V L  +PMFH N W   ++ A L G
Sbjct: 186 GTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA-ATLVG 244
Query: 220 TSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGA 277
               L   ++   ++       GVT     P V  A+A+   E T   L  +  +   G+
Sbjct: 245 AKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYL-ESTGHRLKTLRRLVVGGS 303
Query: 278 PPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAW-KPEWDSLPFETQARLNARQGVRTI 336
             P SL+    + G  +   YGLTE T P  V  + K   +SL  E +  L A+ G+  I
Sbjct: 304 AAPRSLIARFERMGVEVRQGYGLTE-TSPVVVQNFVKSHLESLSEEEKLTLKAKTGL-PI 361
Query: 337 CLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLA 395
            L  L V D    +PVP DGK +GE+ ++G  +  GY  N +A   A   +G+F +GD+A
Sbjct: 362 PLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIA 420
Query: 396 VKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF 455
           V   + Y+EIKDRLKD+I SGGE ISSV++E  L  HP V EAAVVA P  +W E P A 
Sbjct: 421 VWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV 480
Query: 456 VT---LKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRA 511
           V     KP  +EL++           +A    + +P + VFA  +P+++ GK  K  LR 
Sbjct: 481 VVPRGEKPTPEELNE--------HLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALRE 532
Query: 512 KAK 514
           + K
Sbjct: 533 QYK 535

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score =  176 bits (447), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 149/472 (31%), Positives = 224/472 (47%), Gaps = 51/472 (10%)
Query: 45  FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 104
           +GA   GAV   IN RL A  V+FILS + S VVI    + + +   +  + A ++    
Sbjct: 86  YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----YGAPSAPVIDAIRAQAD---- 137
Query: 105 TPHLIV--IGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSG 162
            P  +   IG +S   +       R A   E  +E G  +           ++ + YTSG
Sbjct: 138 PPGTVTDWIGADSLAER------LRSAAADEPAVECGGDD-----------NLFIMYTSG 180
Query: 163 TTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCG-TS 221
           TT  PKGVV +H   +  + + A    +      L  LPMFH    + T   +A+ G T 
Sbjct: 181 TTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT-TVIFSAMRGVTL 239
Query: 222 ICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPP 281
           I + Q  A  V++ I    V    A P +LN +    PE   L   +     T GAP P 
Sbjct: 240 ISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQV-PEFAELDAPDFRYFITGGAPMPE 298
Query: 282 SLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL 341
           +L+   + K   +   Y LTE  G  ++         L  E   R     G  T+  D  
Sbjct: 299 ALIKIYAAKNIEVVQGYALTESCGGGTL---------LLSEDALRKAGSAGRATMFTD-- 347
Query: 342 DVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDN 401
             +  R +  V  +    GE+V++   ++K Y   P+A  +AF NGWF +GD+     + 
Sbjct: 348 --VAVRGDDGVIREHGE-GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEG 404
Query: 402 YIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPE 461
           Y+ IKDRLKD+IISGGEN+   E+E V+   P V E AV+  PDE+WGE   A V    +
Sbjct: 405 YLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVV--AD 462
Query: 462 ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAK 512
            +E+ + ++ E    +C  ++  Y +PK V+FA A+P++ TGKI K +LR +
Sbjct: 463 QNEVSEQQIVE----YCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQ 510

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score =  142 bits (359), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 204/489 (41%), Gaps = 51/489 (10%)
Query: 33  IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 92
           ++ N   M E      + GA+L  +N RLNA  +AF+L   + +VV+   ++  +    L
Sbjct: 62  LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL 121
Query: 93  KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW 152
                 S G +K                  YA+  G+  +  F +         P     
Sbjct: 122 P-----SLGGVKK----------------AYAIGDGSGPFAPFKDLASDTPFSAPEFGAA 160
Query: 153 QSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 212
               + +T+     P+G ++S     +   +    W + E  V L  LP+FH  G     
Sbjct: 161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220
Query: 213 SLAALCGTSICLRQVTAKAVYTAIATHGVTHFCA-APVVLNAIANASPEDTILPLTNVVN 271
           +L    G S+   +         I  H VT     AP++ N +  A+P   +  L  V  
Sbjct: 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQ-LASLRAVTG 279
Query: 272 VNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQ 331
           ++T    P     F  +        T+G +E +G ++   +             R   + 
Sbjct: 280 LDT----PETIERFEATCPNATFWATFGQSETSGLSTFAPY-------------RDRPKS 322
Query: 332 GVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHS 391
             R +    + V+DA  ++P+P     +GEIV+RG  V KGY  N  A + AF NGW H+
Sbjct: 323 AGRPLFWRTVAVVDAE-DRPLPP--GEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHT 379
Query: 392 GDLAVKHPDNYIEIKDRL--KDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 449
           GD+     D Y+    R   K++I +GGEN+   EVE  L  HP + +A V+  PD +W 
Sbjct: 380 GDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWS 439
Query: 450 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHL 508
           E+  A    KP      +   A+ +++F  + +  Y  PK VVF  ALPK A G I +  
Sbjct: 440 EAIKAVCVCKP-----GESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAA 494
Query: 509 LRAKAKEMG 517
           ++    + G
Sbjct: 495 VKTAHGQEG 503

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  122 bits (305), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 118/374 (31%), Positives = 181/374 (48%), Gaps = 38/374 (10%)
Query: 155 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVF------LWTLPMFHGNGW 208
           +AL Y+SGTT  PKGV+++H+G  L++     + G N    F      L  LPMFH    
Sbjct: 228 VALPYSSGTTGLPKGVMLTHKG--LVTSVAQQVDGENPNLYFHSDDVILCVLPMFH---- 281
Query: 209 SYTWSLAALCGTSI-----CLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI 263
            Y  +   LCG  +      + +     +   I    VT     P ++ AIA +S E   
Sbjct: 282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSS-ETEK 340
Query: 264 LPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPF 321
             L+++  V +  AP    L  A++ K    ++   YG+TE  GP    +     +  P 
Sbjct: 341 YDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE-AGPVLAMSLGFAKEPFPV 399
Query: 322 ETQARLNARQGVRTICLDGLDVIDART-NQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
           ++ A     +      +D  D  D+ + NQP        GEI +RG  +MKGYL NP A 
Sbjct: 400 KSGACGTVVRNAEMKIVDP-DTGDSLSRNQP--------GEICIRGHQIMKGYLNNPAAT 450
Query: 381 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
            E    +GW H+GD+ +   D+ + I DRLK++I   G  ++  E+E +L  HP + + A
Sbjct: 451 AETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVA 510
Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPK 498
           VVA  +E  GE P AFV +K +  EL +    +DV +F   ++  Y     V F  ++PK
Sbjct: 511 VVAMKEEAAGEVPVAFV-VKSKDSELSE----DDVKQFVSKQVVFYKRINKVFFTESIPK 565
Query: 499 SATGKIQKHLLRAK 512
           + +GKI +  LRAK
Sbjct: 566 APSGKILRKDLRAK 579

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score =  118 bits (296), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 160/360 (44%), Gaps = 41/360 (11%)
Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 215
           ++ +TSGTT   K V  + R  Y  ++      G +    +L  LP++H +G S      
Sbjct: 167 SIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAV 226
Query: 216 ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTA 275
               T   + +  A+ + T I    +TH    P  LN +      +      N+  +   
Sbjct: 227 IEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY----NLQKILLG 282
Query: 276 GAPPPPSLLFAMSQKGFRITHTYGLTE-----LTGPASVCAWKPEWDSLPFETQARLNAR 330
           GA    +++    Q    I +++G+TE     LT    +   +P+   +P          
Sbjct: 283 GAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSAN------- 335
Query: 331 QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH 390
                        +D +   P   + +  GE++++G+ VM GYL  P      F NG+F+
Sbjct: 336 -------------VDVKIKNP---NKEGHGELMIKGANVMNGYLY-PTDLTGTFENGYFN 378
Query: 391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 450
           +GD+A    + Y+ I DR KD+IISGGENI   ++E V    P + +A  V  PD+ WG+
Sbjct: 379 TGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQ 438
Query: 451 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALPKSATGKIQKHLL 509
            P  +     E+D + K +L   +SK     +  Y VPK       LP ++TGK+Q++ L
Sbjct: 439 VPKLYFV--SESD-ISKAQLIAYLSK----HLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 491

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  118 bits (295), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 113/375 (30%), Positives = 180/375 (48%), Gaps = 40/375 (10%)
Query: 155 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVF------LWTLPMFHGNGW 208
           +AL Y+SGTT  PKGV+++H+G  L++     + G N    F      L  LPMFH    
Sbjct: 181 VALPYSSGTTGLPKGVMLTHKG--LITSVAQQVDGDNPNLYFHSEDVILCVLPMFH---- 234
Query: 209 SYTWSLAALCGTSI-----CLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI 263
            Y  +   LCG  +      + +    ++   I  + V+     P V+ +IA  SP+   
Sbjct: 235 IYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAK-SPDLDK 293
Query: 264 LPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPF 321
             L+++  + + GAP    L   +  K    R+   YG+TE  GP  V A    +   PF
Sbjct: 294 HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE-AGP--VLAMCLAFAKEPF 350
Query: 322 ETQARLNARQGVRTICLDG-LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
           + +          T+  +  + ++D  T   +P +    GEI +RG  +MKGYL +P+A 
Sbjct: 351 DIKP-----GACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLNDPEAT 403
Query: 381 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
                  GW H+GD+     D+ + I DRLK++I   G  ++  E+E +L  HP + +AA
Sbjct: 404 SRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAA 463
Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKLAED-VSKFCRAKMPSYWVPKSVVF-AALP 497
           VV   DE  GE P AFV       + +K +  ED + ++   ++  Y   K V F  A+P
Sbjct: 464 VVGLKDEDAGEVPVAFVV------KSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIP 517
Query: 498 KSATGKIQKHLLRAK 512
           K+ +GKI +  L+ K
Sbjct: 518 KAPSGKILRKNLKEK 532

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 195/420 (46%), Gaps = 39/420 (9%)
Query: 105 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP-EDEWQSIA----LGY 159
           T  +I +G +  D+     + AR  I     +  G+P +++ PP ED  +  A    + Y
Sbjct: 103 TAAVIAVGRQVADAIFQSGSGAR-IIFLGDLVRDGEP-YSYGPPIEDPQREPAQPAFIFY 160
Query: 160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA-A 216
           TSGTT  PK  ++  R A    L  +   G+  G   V L  +P++H  G+      A A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 217 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTA 275
           L GT + + +         +    VT   A P  L+A+A A+    + L L ++ +V  A
Sbjct: 221 LDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 276 GAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNARQG 332
           GA  P ++L  + Q   G ++ + YG TE      +   K   +  P F ++ R+    G
Sbjct: 281 GATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG 339
Query: 333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWFHS 391
                  G+D I A   +         GE+++  S     GYL  P+A  E   +GW+ +
Sbjct: 340 -------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPEATAEKLQDGWYRT 383
Query: 392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 451
            D+AV  P+  + I  R+ D+IISGGENI   E+E+VL   P V E  V+   D+RWG+S
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 452 PCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKHLL 509
             A V  +     L +   A+ +  FCR +++  +  PK   +   LPK+A  K+ +  L
Sbjct: 444 VTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 195/420 (46%), Gaps = 39/420 (9%)
Query: 105 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP-EDEWQSIA----LGY 159
           T  +I +G +  D+     + AR  I     +  G+P +++ PP ED  +  A    + Y
Sbjct: 103 TAAVIAVGRQVADAIFQSGSGAR-IIFLGDLVRDGEP-YSYGPPIEDPQREPAQPAFIFY 160
Query: 160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA-A 216
           TSGTT  PK  ++  R A    L  +   G+  G   V L  +P++H  G+      A A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 217 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTA 275
           L GT + + +         +    VT   A P  L+A+A A+    + L L ++ +V  A
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 276 GAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNARQG 332
           GA  P ++L  + Q   G ++ + YG TE      +   K   +  P F ++ R+    G
Sbjct: 281 GATMPDAVLETVHQHLPGEKV-NAYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG 339
Query: 333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWFHS 391
                  G+D I A   +         GE+++  S     GYL  P+A  E   +GW+ +
Sbjct: 340 -------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
Query: 392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 451
            D+AV  P+  + I  R+ D+IISGGENI   E+E+VL   P V E  V+   D+RWG+S
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 452 PCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKHLL 509
             A V  +     L +   A+ +  FCR +++  +  PK   +   LPK+A  K+ +  L
Sbjct: 444 VTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 195/420 (46%), Gaps = 39/420 (9%)
Query: 105 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP-EDEWQSIA----LGY 159
           T  +I +G +  D+     + AR  I     +  G+P +++ PP ED  +  A    + Y
Sbjct: 103 TAAVIAVGRQVADAIFQSGSGAR-IIFLGDLVRDGEP-YSYGPPIEDPQREPAQPAFIFY 160
Query: 160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA-A 216
           TSGTT  PK  ++  R A    L  +   G+  G   V L  +P++H  G+      A A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 217 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTA 275
           L GT + + +         +    VT   A P  L+A+A A+    + L L ++ +V  A
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 276 GAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNARQG 332
           GA  P ++L  + Q   G ++ + YG TE      +   K   +  P F ++ R+    G
Sbjct: 281 GATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG 339
Query: 333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWFHS 391
                  G+D I A   +         GE+++  S     GYL  P+A  E   +GW+ +
Sbjct: 340 -------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
Query: 392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 451
            D+AV  P+  + I  R+ D+IISGGENI   E+E+VL   P V E  V+   D+RWG+S
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 452 PCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKHLL 509
             A V  +     L +   A+ +  FCR +++  +  PK   +   LPK+A  K+ +  L
Sbjct: 444 VTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 195/420 (46%), Gaps = 39/420 (9%)
Query: 105 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP-EDEWQSIA----LGY 159
           T  +I +G +  D+     + AR  I     +  G+P +++ PP ED  +  A    + Y
Sbjct: 103 TAAVIAVGRQVADAIFQSGSGAR-IIFLGDLVRDGEP-YSYGPPIEDPQREPAQPAFIFY 160
Query: 160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA-A 216
           TSGTT  PK  ++  R A    L  +   G+  G   V L  +P++H  G+      A A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 217 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTA 275
           L GT + + +         +    VT   A P  L+A+A A+    + L L ++ +V  A
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 276 GAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNARQG 332
           GA  P ++L  + Q   G ++ + YG TE      +   K   +  P F ++ R+    G
Sbjct: 281 GATMPDAVLETVHQHLPGEKV-NGYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG 339
Query: 333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWFHS 391
                  G+D I A   +         GE+++  S     GYL  P+A  E   +GW+ +
Sbjct: 340 -------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
Query: 392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 451
            D+AV  P+  + I  R+ D+IISGGENI   E+E+VL   P V E  V+   D+RWG+S
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 452 PCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKHLL 509
             A V  +     L +   A+ +  FCR +++  +  PK   +   LPK+A  K+ +  L
Sbjct: 444 VTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 195/420 (46%), Gaps = 39/420 (9%)
Query: 105 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP-EDEWQSIA----LGY 159
           T  +I +G +  D+     + AR  I     +  G+P +++ PP ED  +  A    + Y
Sbjct: 103 TAAVIAVGRQVADAIFQSGSGAR-IIFLGDLVRDGEP-YSYGPPIEDPQREPAQPAFIFY 160
Query: 160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA-A 216
           TSGTT  PK  ++  R A    L  +   G+  G   V L  +P++H  G+      A A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 217 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTA 275
           L GT + + +         +    VT   A P  L+A+A A+    + L L ++ +V  A
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 276 GAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNARQG 332
           GA  P ++L  + Q   G ++ + YG TE      +   K   +  P F ++ R+    G
Sbjct: 281 GATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG 339
Query: 333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWFHS 391
                  G+D I A   +         GE+++  S     GYL  P+A  E   +GW+ +
Sbjct: 340 -------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
Query: 392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 451
            D+AV  P+  + I  R+ D+IISGGENI   E+E+VL   P V E  V+   D+RWG+S
Sbjct: 384 SDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 452 PCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKHLL 509
             A V  +     L +   A+ +  FCR +++  +  PK   +   LPK+A  K+ +  L
Sbjct: 444 VTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 120/394 (30%), Positives = 173/394 (43%), Gaps = 44/394 (11%)
Query: 126 ARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNG- 184
           ARGA+  E   + GDP                 YTSGTT  PKG V+  R A   +L+  
Sbjct: 143 ARGAVP-EDGADDGDPALVV-------------YTSGTTGPPKGAVIPRR-ALATTLDAL 187
Query: 185 ALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSI-CLRQVTAKAVYTAIATHGVTH 243
           A  W      V +  LP+FH +G           G S+  L + + +     +   G T 
Sbjct: 188 ADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATM 246
Query: 244 FCAAPVVLNAIANASPEDTILPLTNV---VNVNTAGAPPPPSLLFAMSQKGFRITHTYGL 300
               P + + IA   P D  L        + V+ + A P        +  G R+   YG+
Sbjct: 247 LFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGM 306
Query: 301 TELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDV-IDARTNQPVPA-DGKT 358
           TE     SV A     D  P         R G   + L G+++ +      P+ A DG++
Sbjct: 307 TETLMNTSVRA-----DGEP---------RAGTVGVPLPGVELRLVEEDGTPIAALDGES 352
Query: 359 IGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDR-LKDVIISG 416
           +GEI +RG  +   YL  P A   AF  +G+F +GD+AV+ PD Y+ I  R   D+I SG
Sbjct: 353 VGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSG 412
Query: 417 GENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK 476
           G  I + E+E  L  HP V EAAV   PD   GE   A++     A     G LA+ V+ 
Sbjct: 413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVA- 471
Query: 477 FCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLL 509
              A++  +  P+ V +  A+P++  GKI K  L
Sbjct: 472 ---ARLAPHKRPRVVRYLDAVPRNDMGKIMKRAL 502

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 192/420 (45%), Gaps = 39/420 (9%)
Query: 105 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP-EDEWQSIA----LGY 159
           T  +I +G +  D+     + AR  I     +  G+P +++ PP ED  +  A    + Y
Sbjct: 103 TAAVIAVGRQVADAIFQSGSGAR-IIFLGDLVRDGEP-YSYGPPIEDPQREPAQPAFIFY 160
Query: 160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA-A 216
           TSGTT  PK  ++  R A    L  +   G+  G   V L   P++H  G+      A A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAVLVAALA 220
Query: 217 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTA 275
           L GT + + +         +    VT   A P  L+A+A A+    + L L ++ +V  A
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 276 GAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNARQG 332
           GA  P ++L  + Q   G ++ + YG TE          K   +  P F ++ R+    G
Sbjct: 281 GATXPDAVLETVHQHLPGEKV-NIYGTTEAXNSLYXRQPKTGTEXAPGFFSEVRIVRIGG 339
Query: 333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWFHS 391
                  G+D I A   +         GE+++  S     GYL  P+A  E   +GW+ +
Sbjct: 340 -------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
Query: 392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 451
            D+AV  P+  + I  R+ D IISGGENI   E+E+VL   P V E  V+   D+RWG+S
Sbjct: 384 SDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 452 PCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKHLL 509
             A V  +     L +   A+ +  FCR +++  +  PK   +   LPK+A  K+ +  L
Sbjct: 444 VTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 125/500 (25%), Positives = 202/500 (40%), Gaps = 57/500 (11%)
Query: 33  IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI----VDQEFFSLA 88
           + P VP  +    G   AG +     I++ +T + + L  + +  ++    V QE  ++A
Sbjct: 105 VLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA 164
Query: 89  EEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
            E   +       ++K    +++ ++SCD       L   A      +ETG  E +    
Sbjct: 165 SECPSL-------RIK----LLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEAS---- 209
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 208
                  A+ +TSGT+  PK    S+    L +   A  W   + +  +WT+      GW
Sbjct: 210 -------AIYFTSGTSGLPKMAEHSYSSLGLKAKMDAG-WTGLQASDIMWTI---SDTGW 258
Query: 209 SYT--------WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE 260
                      W+L A C     L +     +   ++++ +     AP+V   +      
Sbjct: 259 ILNILCSLMEPWALGA-CTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLS 317
Query: 261 DTILP-LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL 319
               P L N V V  +  P   +L    +Q G  I  +YG TE TG   + +        
Sbjct: 318 SYKFPHLQNCVTVGESLLPE--TLENWRAQTGLDIRESYGQTE-TGLTCMVS-------- 366
Query: 320 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIV--MRGSCVMKGYLKNP 377
             +T        G    C D + +ID + N   P     IG  V  +R   +  GY+ NP
Sbjct: 367 --KTMKIKPGYMGTAASCYD-VQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNP 423
Query: 378 KANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 437
                     ++  GD  +K  D Y +   R  D+I S G  I   EVE  L  HP V+E
Sbjct: 424 DKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVE 483
Query: 438 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-L 496
            AV++ PD   GE   AFV L  +    D  +L +++ +  ++    Y  P+ + F   L
Sbjct: 484 TAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNL 543
Query: 497 PKSATGKIQKHLLRAKAKEM 516
           PK+ TGKIQ+  LR K  +M
Sbjct: 544 PKTVTGKIQRAKLRDKEWKM 563

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 125/500 (25%), Positives = 202/500 (40%), Gaps = 57/500 (11%)
Query: 33  IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI----VDQEFFSLA 88
           + P VP  +    G   AG +     I++ +T + + L  + +  ++    V QE  ++A
Sbjct: 105 VLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA 164
Query: 89  EEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
            E   +       ++K    +++ ++SCD       L   A      +ETG  E +    
Sbjct: 165 SECPSL-------RIK----LLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEAS---- 209
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 208
                  A+ +TSGT+  PK    S+    L +   A  W   + +  +WT+      GW
Sbjct: 210 -------AIYFTSGTSGLPKMAEHSYSSLGLKAKMDAG-WTGLQASDIMWTI---SDTGW 258
Query: 209 SYT--------WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE 260
                      W+L A C     L +     +   ++++ +     AP+V   +      
Sbjct: 259 ILNILCSLMEPWALGA-CTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLS 317
Query: 261 DTILP-LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL 319
               P L N V V  +  P   +L    +Q G  I  +YG TE TG   + +        
Sbjct: 318 SYKFPHLQNCVTVGESLLPE--TLENWRAQTGLDIRESYGQTE-TGLTCMVS-------- 366
Query: 320 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIV--MRGSCVMKGYLKNP 377
             +T        G    C D + +ID + N   P     IG  V  +R   +  GY+ NP
Sbjct: 367 --KTMKIKPGYMGTAASCYD-VQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNP 423
Query: 378 KANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 437
                     ++  GD  +K  D Y +   R  D+I S G  I   EVE  L  HP V+E
Sbjct: 424 DKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVE 483
Query: 438 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-L 496
            AV++ PD   GE   AFV L  +    D  +L +++ +  ++    Y  P+ + F   L
Sbjct: 484 TAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNL 543
Query: 497 PKSATGKIQKHLLRAKAKEM 516
           PK+ TGKIQ+  LR K  +M
Sbjct: 544 PKTVTGKIQRAKLRDKEWKM 563

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 193/441 (43%), Gaps = 43/441 (9%)
Query: 98  NSEGKLKTPHLIVIGDESCDSKQLE--YALARGAIEYEKFLETGDPEFAWKPPE-DEWQS 154
           N + KL     I+I D   D +  +  Y            L  G  E+ + P   D  ++
Sbjct: 138 NVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH------LPPGFNEYDFVPESFDRDKT 191
Query: 155 IALGY-TSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHGNGWSY 210
           IAL   +SG+T  PKGV + HR A +  S     I+G  +      L  +P  HG G   
Sbjct: 192 IALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT 251
Query: 211 TWSLAALCGTSICLRQVTAKAVY-TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 269
           T     +CG  + L     + ++  ++  + +      P + +  A ++  D    L+N+
Sbjct: 252 TLGYL-ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNL 309
Query: 270 VNVNTAGAPPPPSLLFAMSQKGFR---ITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 326
             + + GAP    +  A++++ F    I   YGLTE T   S     PE D  P      
Sbjct: 310 HEIASGGAPLSKEVGEAVAKR-FHLPGIRQGYGLTETT---SAILITPEGDDKPGAVG-- 363
Query: 327 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA-NEEAFA 385
                  + +      V+D  T + +  + +  GE+ +RG  +M GY+ NP+A N     
Sbjct: 364 -------KVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDK 414
Query: 386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 445
           +GW HSGD+A    D +  I DRLK +I   G  ++  E+E +L  HP + +A V   PD
Sbjct: 415 DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPD 474
Query: 446 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKI 504
           +  GE P A V L+      +K  +    S+   AK     +   VVF   +PK  TGK+
Sbjct: 475 DDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKK----LRGGVVFVDEVPKGLTGKL 530
Query: 505 QKHLLRA---KAKEMGPVKMI 522
               +R    KAK+ G  K++
Sbjct: 531 DARKIREILIKAKKGGKSKLV 551

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 167/377 (44%), Gaps = 33/377 (8%)
Query: 150 DEWQSIALGY-TSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHG 205
           D  + +AL   +SG+T  PKGV ++H       S     I+G  ++ G   L  +P  HG
Sbjct: 189 DRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 206 NGWSYTWSLAALCGTSIC-LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 264
            G   T     +CG  +  L +   +     +  +  T+    P +  AI N S      
Sbjct: 249 FGMFTTLGYL-ICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLF-AILNKSELLNKY 306
Query: 265 PLTNVVNVNTAGAPPPPSLLFAMSQK----GFRITHTYGLTELTGPASVCAWKPEWDSLP 320
            L+N+V + + GAP    +  A++++    G R    YGLTE T   S     PE D  P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVR--QGYGLTETT---SAIIITPEGDDKP 361
Query: 321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
             +          + + L    VID  T + +  + +  GE+ ++G  +MKGY+ NP+A 
Sbjct: 362 GASG---------KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEAT 410
Query: 381 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
           +E     GW H+GD+     + +  I DRLK +I   G  +   E+E VL  HP + +A 
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAG 470
Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPK 498
           V   PD   GE P A V L+   +  +K  +    S+   AK     +   V F   +PK
Sbjct: 471 VAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAK----RLRGGVRFVDEVPK 526
Query: 499 SATGKIQKHLLRAKAKE 515
             TGKI    +R   K+
Sbjct: 527 GLTGKIDGRAIREILKK 543

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 192/440 (43%), Gaps = 43/440 (9%)
Query: 98  NSEGKLKTPHLIVIGDESCDSKQLE--YALARGAIEYEKFLETGDPEFAWKPPE-DEWQS 154
           N + KL     I+I D   D +  +  Y            L  G  E+ + P   D  ++
Sbjct: 138 NVQKKLPIIQKIIIMDSKTDYQGFQSMYTFV------TSHLPPGFNEYDFVPESFDRDKT 191
Query: 155 IALGY-TSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHGNGWSY 210
           IAL   +SG+T  PKGV + HR A +  S     I+G  +      L  +P  HG G   
Sbjct: 192 IALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT 251
Query: 211 TWSLAALCGTSICLRQVTAKAVY-TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 269
           T     +CG  + L     + ++  ++  + +      P + +  A ++  D    L+N+
Sbjct: 252 TLGYL-ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNL 309
Query: 270 VNVNTAGAPPPPSLLFAMSQKGFR---ITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 326
             + + GAP    +  A++++ F    I   YGLTE T   S     PE D  P      
Sbjct: 310 HEIASGGAPLSKEVGEAVAKR-FHLPGIRQGYGLTETT---SAILITPEGDDKPGAVG-- 363
Query: 327 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA-NEEAFA 385
                  + +      V+D  T + +  + +  GE+ +RG  +M GY+ NP+A N     
Sbjct: 364 -------KVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDK 414
Query: 386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 445
           +GW HSGD+A    D +  I DRLK +I   G  ++  E+E +L  HP + +A V   PD
Sbjct: 415 DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPD 474
Query: 446 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKI 504
           +  GE P A V L+      +K  +    S+   AK     +   VVF   +PK  TGK+
Sbjct: 475 DDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKK----LRGGVVFVDEVPKGLTGKL 530
Query: 505 QKHLLRA---KAKEMGPVKM 521
               +R    KAK+ G  K+
Sbjct: 531 DARKIREILIKAKKGGKSKL 550

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 192/440 (43%), Gaps = 43/440 (9%)
Query: 98  NSEGKLKTPHLIVIGDESCDSKQLE--YALARGAIEYEKFLETGDPEFAWKPPE-DEWQS 154
           N + KL     I+I D   D +  +  Y            L  G  E+ + P   D  ++
Sbjct: 143 NVQKKLPIIQKIIIMDSKTDYQGFQSMYTFV------TSHLPPGFNEYDFVPESFDRDKT 196
Query: 155 IALGY-TSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHGNGWSY 210
           IAL   +SG+T  PKGV + HR A +  S     I+G  +      L  +P  HG G   
Sbjct: 197 IALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT 256
Query: 211 TWSLAALCGTSICLRQVTAKAVY-TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 269
           T     +CG  + L     + ++  ++  + +      P + +  A ++  D    L+N+
Sbjct: 257 TLGYL-ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNL 314
Query: 270 VNVNTAGAPPPPSLLFAMSQKGFR---ITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 326
             + + GAP    +  A++++ F    I   YGLTE T   S     PE D  P      
Sbjct: 315 HEIASGGAPLSKEVGEAVAKR-FHLPGIRQGYGLTETT---SAILITPEGDDKPGAVG-- 368
Query: 327 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA-NEEAFA 385
                  + +      V+D  T + +  + +  GE+ +RG  +M GY+ NP+A N     
Sbjct: 369 -------KVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDK 419
Query: 386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 445
           +GW HSGD+A    D +  I DRLK +I   G  ++  E+E +L  HP + +A V   PD
Sbjct: 420 DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPD 479
Query: 446 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKI 504
           +  GE P A V L+      +K  +    S+   AK     +   VVF   +PK  TGK+
Sbjct: 480 DDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKK----LRGGVVFVDEVPKGLTGKL 535
Query: 505 QKHLLRA---KAKEMGPVKM 521
               +R    KAK+ G  K+
Sbjct: 536 DARKIREILIKAKKGGKSKL 555

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 166/377 (44%), Gaps = 33/377 (8%)
Query: 150 DEWQSIALGY-TSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHG 205
           D  + +AL   +SG+T  PKGV ++H       S     I+G  ++ G   L  +P  HG
Sbjct: 189 DRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 206 NGWSYTWSLAALCGTSIC-LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 264
            G   T     +CG  +  L +   +     +  +  T     P +  AI N S      
Sbjct: 249 FGMFTTLGYL-ICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLF-AILNKSELLNKY 306
Query: 265 PLTNVVNVNTAGAPPPPSLLFAMSQK----GFRITHTYGLTELTGPASVCAWKPEWDSLP 320
            L+N+V + + GAP    +  A++++    G R    YGLTE T   S     PE D  P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVR--QGYGLTETT---SAIIITPEGDDKP 361
Query: 321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
             +          + + L    VID  T + +  + +  GE+ ++G  +MKGY+ NP+A 
Sbjct: 362 GASG---------KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEAT 410
Query: 381 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
           +E     GW H+GD+     + +  I DRLK +I   G  +   E+E VL  HP + +A 
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAG 470
Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPK 498
           V   PD   GE P A V L+   +  +K  +    S+   AK     +   V F   +PK
Sbjct: 471 VAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAK----RLRGGVRFVDEVPK 526
Query: 499 SATGKIQKHLLRAKAKE 515
             TGKI    +R   K+
Sbjct: 527 GLTGKIDGRAIREILKK 543

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  112 bits (279), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 166/377 (44%), Gaps = 33/377 (8%)
Query: 150 DEWQSIALGY-TSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHG 205
           D  + +AL   +SG+T  PKGV ++H       S     I+G  ++ G   L  +P  HG
Sbjct: 189 DRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 206 NGWSYTWSLAALCGTSIC-LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 264
            G   T     +CG  +  L +   +     +  +  T     P +  AI N S      
Sbjct: 249 FGMFTTLGYL-ICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLF-AILNKSELLNKY 306
Query: 265 PLTNVVNVNTAGAPPPPSLLFAMSQK----GFRITHTYGLTELTGPASVCAWKPEWDSLP 320
            L+N+V + + GAP    +  A++++    G R    YGLTE T   S     PE D  P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVR--QGYGLTETT---SAIIITPEGDDKP 361
Query: 321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
             +          + + L    VID  T + +  + +  GE+ ++G  +MKGY+ NP+A 
Sbjct: 362 GASG---------KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEAT 410
Query: 381 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
           +E     GW H+GD+     + +  I DRLK +I   G  +   E+E VL  HP + +A 
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAG 470
Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPK 498
           V   PD   GE P A V L+   +  +K  +    S+   AK     +   V F   +PK
Sbjct: 471 VAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAK----RLRGGVRFVDEVPK 526
Query: 499 SATGKIQKHLLRAKAKE 515
             TGKI    +R   K+
Sbjct: 527 GLTGKIDGRAIREILKK 543

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  108 bits (270), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 188/439 (42%), Gaps = 41/439 (9%)
Query: 98  NSEGKLKTPHLIVIGDESCDSKQLE--YALARGAIEYEKFLETGDPEFAWKPPE-DEWQS 154
           N + KL     I+I D   D +  +  Y            L  G  E+ + P   D  ++
Sbjct: 143 NVQKKLPIIQKIIIMDSKTDYQGFQSMYTFV------TSHLPPGFNEYDFVPESFDRDKT 196
Query: 155 IALGY-TSGTTASPKGVVVSHRG-AYLMSLNGALIWG--MNEGAVFLWTLPMFHGNGWSY 210
           IAL   +SG+T  PKGV + HR  A   S     I+G  +      L  +P  HG G   
Sbjct: 197 IALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFT 256
Query: 211 TWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVV 270
           T          + + +   +    ++  + +      P + + +A ++  D    L+N+ 
Sbjct: 257 TLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDK-YDLSNLH 315
Query: 271 NVNTAGAPPPPSLLFAMSQKGFR---ITHTYGLTELTGPASVCAWKPEWDSLPFETQARL 327
            + + GAP    +  A++++ F    I   YGLTE T   S     P+ D  P       
Sbjct: 316 EIASGGAPLSKEVGEAVAKR-FHLPGIRQGYGLTETT---SAILITPKGDDKPGAVG--- 368
Query: 328 NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA-NEEAFAN 386
                 + +      V+D  T + +  + +  GE+ +RG  +M GY+ NP+A N     +
Sbjct: 369 ------KVVPFFEAKVVDLDTGKTLGVNQR--GELSVRGPMIMSGYVNNPEATNALIDKD 420
Query: 387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 446
           GW HSGD+A    D +  I DRLK +I   G  ++  E+E +L  HP + +A V   PD+
Sbjct: 421 GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDD 480
Query: 447 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 505
             GE P A V L+      +K  +    S+   AK     +   VVF   +PK  TGK+ 
Sbjct: 481 DAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKK----LRGGVVFVDEVPKGLTGKLD 536
Query: 506 KHLLRA---KAKEMGPVKM 521
              +R    KAK+ G  K+
Sbjct: 537 ARKIREILIKAKKGGKSKL 555

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 167/377 (44%), Gaps = 30/377 (7%)
Query: 142 EFAWKP-PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTL 200
           +F   P P DE     L  + GTT +PK +  +H   Y        I    +   +L  +
Sbjct: 175 DFTATPSPADEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAI 232
Query: 201 PMFHGNGWSYTWSLAALC--GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANAS 258
           P  H    S   SL      GT +     +A   +  I  H V      P  ++    A 
Sbjct: 233 PAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQAL 292
Query: 259 PE-DTILPLTNVVNVNTAGAPPPPSLLFAM-SQKGFRITHTYGLTELTGPASVCAWKPEW 316
            E ++   L ++  +   GA    +L   + ++ G ++   +G+ E  G  +        
Sbjct: 293 IEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAE--GLVNYTRLD--- 347
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
                ++  ++   QG      D + V DA  N P+P     +G ++ RG    +GY K+
Sbjct: 348 -----DSAEKIIHTQGYPMCPDDEVWVADAEGN-PLPQ--GEVGRLMTRGPYTFRGYYKS 399
Query: 377 PKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLV 435
           P+ N  AF ANG++ SGDL    P+ YI ++ R KD I  GGE I++ E+E +L  HP V
Sbjct: 400 PQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAV 459
Query: 436 LEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSV-VF 493
           + AA+V+  DE  GE  CA++ +K       +   A  V +F R + +  + +P  V   
Sbjct: 460 IYAALVSMEDELMGEKSCAYLVVK-------EPLRAVQVRRFLREQGIAEFKLPDRVECV 512
Query: 494 AALPKSATGKIQKHLLR 510
            +LP +A GK+ K  LR
Sbjct: 513 DSLPLTAVGKVDKKQLR 529

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 166/378 (43%), Gaps = 43/378 (11%)
Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 218
           YT GTT  PKGV ++H      +L  A+  G++     +   P FH   +        + 
Sbjct: 187 YTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFHSAEFGLVNLXVTVG 246
Query: 219 GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGA- 277
              +       + +   I  +  T   A P  LN + N           + + V   GA 
Sbjct: 247 NEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAW 306
Query: 278 PPPPSL------LFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN--A 329
           P  P+L      L A      R+ H     ++ G    C   P   + P     RL+   
Sbjct: 307 PVAPALVEKLLKLAAEKCNNPRLRHN----QIWGXTEAC---PXVTTNP---PLRLDKST 356
Query: 330 RQGVRTICLDGLDVIDARTNQPVPADGKTIG-----EIVMRGSCVMKGYLKNPKANEEAF 384
            QGV    ++ L VI          DG+ +G     EIV+RG  + KGY K  K N+E +
Sbjct: 357 TQGVPXSDIE-LKVISLE-------DGRELGVGESGEIVIRGPNIFKGYWKREKENQECW 408
Query: 385 -----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
                   +F +GD+     + ++  +DR+K+VI   G  I+  E+E +L  H  V + A
Sbjct: 409 WYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVA 468
Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKL-AEDVSKFCRAKMPSYWVPKSVVFA-ALP 497
           V+ +PDE  GE P AF+ LKPE     +GK+  ED+ ++ R ++  Y   + V F   LP
Sbjct: 469 VIGKPDEEAGEVPKAFIVLKPEY----RGKVDEEDIIEWVRERISGYKRVREVEFVEELP 524
Query: 498 KSATGKIQKHLLRAKAKE 515
           ++A+GK+ + LLR K  E
Sbjct: 525 RTASGKLLRRLLREKEAE 542

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 184/424 (43%), Gaps = 39/424 (9%)
Query: 100 EGKLKTPHLIVIGDESCD--SKQLEYALARGAIEYEKFLETGDPEFAWKPP--EDEWQSI 155
           + KL     IVI D   D   KQ  Y+        E  L  G  E+ + P   + E  + 
Sbjct: 174 QKKLPIIQKIVILDSREDYMGKQSMYSFI------ESHLPAGFNEYDYIPDSFDRETATA 227
Query: 156 ALGYTSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHGNGWSYTW 212
            +  +SG+T  PKGV ++H+   +  S     ++G  +      L  +P  HG G   T 
Sbjct: 228 LIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTL 287
Query: 213 SLAALCGTSICLRQVTAKAVY-TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 271
                CG  I L     + ++  ++  + +      P + +  A ++  D    L+N+  
Sbjct: 288 GYLT-CGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDK-YDLSNLHE 345
Query: 272 VNTAGAPPPPSLLFAMSQKGFR---ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN 328
           + + GAP    +  A++++ F+   I   YGLTE T  +++       D  P        
Sbjct: 346 IASGGAPLAKEVGEAVAKR-FKLPGIRQGYGLTETT--SAIIITPRGRDDKPGACG---- 398
Query: 329 ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANG 387
                + +      ++D  T + +  + +  GE+ ++G  +MKGY+ NP+A       +G
Sbjct: 399 -----KVVPFFSAKIVDLDTGKTLGVNQR--GELCVKGPMIMKGYVNNPEATSALIDKDG 451
Query: 388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 447
           W HSGD+A    D Y  I DRLK +I   G  +   E+E +L  HP + +A V   PD  
Sbjct: 452 WLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPD 511
Query: 448 WGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQK 506
            GE P A V L+ E   + + ++ + V+    A   S  +   V F   +PK  TGKI  
Sbjct: 512 AGELPAAVVVLE-EGKTMTEQEVMDYVAGQVTA---SKRLRGGVKFVDEVPKGLTGKIDA 567
Query: 507 HLLR 510
             +R
Sbjct: 568 RKIR 571

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 167/371 (45%), Gaps = 30/371 (8%)
Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 207
           P DE     L  + G+T +PK +  +H          A I G+N     L  LP  H   
Sbjct: 189 PADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM 246
Query: 208 WSYTWSLAALC--GTSICLRQVTAKAVYTAIATHGVTHFCAAP--VVLNAIANASPEDTI 263
            S   +L  L   G  +          ++ I  H V      P  V++     A  +D I
Sbjct: 247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQI 306
Query: 264 LPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFE 322
             L  +      GA  P SL   + +    ++   +G+ E  G  +      + D   F 
Sbjct: 307 QSLKLL---QVGGASFPESLARQVPEVLNCKLQQVFGMAE--GLVNYTRLD-DSDEQIFT 360
Query: 323 TQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 382
           TQ R  +         D + ++D +  + VP +G+ IG +  RG     GY ++P+ N +
Sbjct: 361 TQGRPISSD-------DEIKIVDEQYRE-VP-EGE-IGMLATRGPYTFCGYYQSPEHNSQ 410
Query: 383 AF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 441
            F  + +++SGDL  + PD  + +  R+KD I  GGE I+S E+EK++ LHP V+ AA+V
Sbjct: 411 VFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALV 470
Query: 442 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALPKSA 500
           A  DE++GE  CAF+  +    EL    L   + +   A+   Y +P  + +  +LP +A
Sbjct: 471 AIVDEQFGEKSCAFIVSR--NPELKAVVLRRHLMELGIAQ---YKLPDQIKLIESLPLTA 525
Query: 501 TGKIQKHLLRA 511
            GK+ K  LR+
Sbjct: 526 VGKVDKKQLRS 536

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 157/366 (42%), Gaps = 44/366 (12%)
Query: 45  FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 104
           +GA   GAV   IN RL A  V+FILS + S VVI    + + +   +  + A ++    
Sbjct: 72  YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----YGAPSAPVIDAIRAQAD---- 123
Query: 105 TPHLIV--IGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSG 162
            P  +   IG +S   +       R A   E  +E G  +           ++ + YTSG
Sbjct: 124 PPGTVTDWIGADSLAER------LRSAAADEPAVECGGDD-----------NLFIMYTSG 166
Query: 163 TTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCG-TS 221
           TT  PKGVV +H   +  + + A    +      L  LPMFH    + T   +A+ G T 
Sbjct: 167 TTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT-TVIFSAMRGVTL 225
Query: 222 ICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPP 281
           I + Q  A  V++ I    V    A P +LN +    PE   L   +     T GAP P 
Sbjct: 226 ISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQV-PEFAELDAPDFRYFITGGAPMPE 284
Query: 282 SLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL 341
           +L+   + K   +   Y LTE  G  ++         L  E   R     G  T+  D  
Sbjct: 285 ALIKIYAAKNIEVVQGYALTESCGGGTL---------LLSEDALRKAGSAGRATMFTD-- 333
Query: 342 DVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDN 401
             +  R +  V  +    GE+V++   ++K Y   P+A  +AF NGWF +GD+     + 
Sbjct: 334 --VAVRGDDGVIREHGE-GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEG 390
Query: 402 YIEIKD 407
           Y+ IKD
Sbjct: 391 YLYIKD 396

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 160/373 (42%), Gaps = 42/373 (11%)
Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 215
           A+ YTSGTT   KG  +SH      SL     W      V +  LP++H +G     ++ 
Sbjct: 159 AILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 216 ALC-GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 274
               G+ I L +     +    A    T     P     +   SP  T    T    +  
Sbjct: 219 LFARGSXIFLPKFDPDKILDLXAR--ATVLXGVPTFYTRLLQ-SPRLT-KETTGHXRLFI 274
Query: 275 AGAPPPPSLLFAMSQK------GFRITHTYGLTELTGPASVCAWKP-EWDSLPFETQARL 327
           +G+ P    L A + +      G  +   YG TE     S     P + D +P       
Sbjct: 275 SGSAP----LLADTHREWSAKTGHAVLERYGXTETNXNTS----NPYDGDRVP------- 319
Query: 328 NARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
               G     L G+   V D  T + +P     IG I ++G  V KGY + P+  +  F 
Sbjct: 320 ----GAVGPALPGVSARVTDPETGKELPR--GDIGXIEVKGPNVFKGYWRXPEKTKSEFR 373
Query: 386 N-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 444
           + G+F +GDL       Y+ I  R KD++I+GG N+   E+E  +   P V+E+AV+  P
Sbjct: 374 DDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVP 433
Query: 445 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGK 503
              +GE   A V ++ +   +D+ ++   +      ++  +  PK V+F   LP++  GK
Sbjct: 434 HADFGEGVTA-VVVRDKGATIDEAQVLHGLD----GQLAKFKXPKKVIFVDDLPRNTXGK 488
Query: 504 IQKHLLRAKAKEM 516
           +QK++LR   K++
Sbjct: 489 VQKNVLRETYKDI 501

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 196/485 (40%), Gaps = 59/485 (12%)
Query: 43  AQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEAN---- 98
           A  GA  AG V    N  L      ++L+H+ +  VI          +AL+  E +    
Sbjct: 89  AFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQL 148
Query: 99  --SEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA 156
             S+ +   P L  + +E  D+       A           TG  + A+      W    
Sbjct: 149 IVSQPRESEPRLAPLFEELIDAAAPAAKAA----------ATGCDDIAF------WL--- 189
Query: 157 LGYTSGTTASPKGVVVSHRGAY-LMSLNGALIWGMNEGAVFLWTLPMFH----GNGWSYT 211
             Y+SG+T  PKG V +H   Y    L    I G+ E  V      +F     GNG ++ 
Sbjct: 190 --YSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP 247
Query: 212 WSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVV 270
            S+ A   T+I +  + TA A++  +  H  T F   P  L A    SP         + 
Sbjct: 248 LSVGA---TAILMAERPTADAIFARLVEHRPTVFYGVPT-LYANMLVSPNLPARADVAIR 303
Query: 271 NVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNAR 330
              +AG   P  +       G R T  +G   L G  S        + L      R  A 
Sbjct: 304 ICTSAGEALPREI-------GERFTAHFGCEILDGIGST-------EMLHIFLSNRAGAV 349
Query: 331 Q-GVRTICLDGLDV-IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGW 388
           + G     + G ++ +       VP DG+ +G++ ++G      Y  N + +   F   W
Sbjct: 350 EYGTTGRPVPGYEIELRDEAGHAVP-DGE-VGDLYIKGPSAAVMYWNNREKSRATFLGEW 407
Query: 389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 448
             SGD   + P+       R  D++   G+ +S VEVE VL  H  VLEAAVV   D   
Sbjct: 408 IRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGG 466
Query: 449 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKH 507
                AFV LK E    +   LAE++  F + ++  +  P+ +VF   LPK+ATGKIQ+ 
Sbjct: 467 LVKTRAFVVLKREFAPSE--ILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRF 524
Query: 508 LLRAK 512
            LR +
Sbjct: 525 KLREQ 529

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 156/373 (41%), Gaps = 39/373 (10%)
Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 215
           A+ YTSGTT    G ++SH      SL     W      V +  LP++H +G     ++ 
Sbjct: 159 AILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 216 ALC-GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 274
               G+ I L       +   +A    T     P     +   SP  T    T  + +  
Sbjct: 219 LFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQ-SPRLTX-ETTGHMRLFI 274
Query: 275 AGAPPPPSLLFAMSQK------GFRITHTYGLTELTGPASVCAWKP-EWDSLPFETQARL 327
           +G+ P    L A + +      G  +   YG+TE     ++    P + D +P       
Sbjct: 275 SGSAP----LLADTHREWSAXTGHAVLERYGMTE----TNMNTSNPYDGDRVP------- 319
Query: 328 NARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
               G     L G+   V D  T   +P     IG I + G  V  GY + P+     F 
Sbjct: 320 ----GAVGPALPGVSARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373
Query: 386 N-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 444
           + G+F +GDL       Y+ I  R  D++I+GG N+   E+E  +   P V+E+AV+  P
Sbjct: 374 DDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 445 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGK 503
              +GE   AFV L  E    +   LAE++  F   ++  + +P  V+F   LP++  G 
Sbjct: 434 HADFGEGVTAFVVLXREFAPSE--ILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGA 491
Query: 504 IQKHLLRAKAKEM 516
           +Q ++LR    ++
Sbjct: 492 VQXNVLRETYXDI 504

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 9/159 (5%)
Query: 360 GEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGE 418
           G ++ RG   ++GY K  + N  +F  +G++ +GD+     D YI ++ R KD I  GGE
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 419 NISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFC 478
            +++ EVE  L  HP V +AA+V+ PD+  GE  C F+  + EA +      A ++  F 
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPK------AAELKAFL 492
Query: 479 RAK-MPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKE 515
           R + + +Y +P  V F  + P++  GK+ K  LR    E
Sbjct: 493 RERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 9/159 (5%)
Query: 360 GEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGE 418
           G ++ RG   ++GY K  + N  +F  +G++ +GD+     D YI ++ R KD I  GGE
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 419 NISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFC 478
            +++ EVE  L  HP V +AA V+ PD+  GE  C F+  + EA +      A ++  F 
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPK------AAELKAFL 492
Query: 479 RAK-MPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKE 515
           R + + +Y +P  V F  + P++  GK+ K  LR    E
Sbjct: 493 RERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 168/407 (41%), Gaps = 44/407 (10%)
Query: 127 RGAIEYEKFLETGDPEFAWKPPE--DEWQSIALGY-TSGTTASPKGVVVSHRGAY-LMSL 182
            G I++ K LE   P F     E   + + I L Y +SGT   PK  +V H   Y L  +
Sbjct: 197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPK--MVEHDNTYPLGHI 254
Query: 183 NGALIWGMNEGAVFLWTLPMFHGNGWS-------YTWSLAALCGTSICLRQVTAKAVYTA 235
             A  W   E     +T+     +GW        Y   +A          +  AK +   
Sbjct: 255 LTAKYWQNVEDDGLHYTVA---DSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK 311
Query: 236 IATHGVTHFCAAPVVLNAIANASPED-TILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFR 293
            + +GVT FCA P +   +     ED +    + +     AG P  P +     +  G +
Sbjct: 312 ASKYGVTTFCAPPTIYRFLIK---EDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIK 368
Query: 294 ITHTYGLTELTGPASVCAW-KPEWDSLPFET---QARLNARQG-VRTICLDGLDVIDART 348
           +   +G TE     +   W +P+  S+   T   +  L  R G +  +  +G  VI+   
Sbjct: 369 LMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINT-- 426
Query: 349 NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDR 408
                 +GK +G  V  G        K+P+  EE + +G++H+GD+A    D Y+    R
Sbjct: 427 -----MEGKPVGLFVHYG--------KDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGR 473
Query: 409 LKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG 468
             D+I + G  +   EVE  L  HP VLE A+   PD   G+   A + L  +    D  
Sbjct: 474 ADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSD-- 531
Query: 469 KLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAK 514
            L  ++    +     Y  P+ + F   LPK+ +GKI++  +R K +
Sbjct: 532 SLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQ 578

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 150/373 (40%), Gaps = 42/373 (11%)
Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 215
           A+ YTSGTT    G ++SH      SL     W      V +  LP++H +G     ++ 
Sbjct: 159 AILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 216 ALC-GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 274
               G+ I L       +   +A    T     P     +   SP  T    T  + +  
Sbjct: 219 LFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQ-SPRLTX-ETTGHMRLFI 274
Query: 275 AGAPPPPSLLFAMSQK------GFRITHTYGLTELTGPASVCAWKP-EWDSLPFETQARL 327
           +G+ P    L A + +      G  +   YG+TE     ++    P + D +P       
Sbjct: 275 SGSAP----LLADTHREWSAXTGHAVLERYGMTE----TNMNTSNPYDGDRVP------- 319
Query: 328 NARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
               G     L G+   V D  T   +P     IG I + G  V  GY + P+     F 
Sbjct: 320 ----GAVGPALPGVSARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373
Query: 386 N-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 444
           + G+F +GDL       Y+ I  R  D++I+GG N+   E+E  +   P V+E+AV+  P
Sbjct: 374 DDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 445 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGK 503
              +GE   AFV L  E            V      ++  + +P  V+F   LP++  G 
Sbjct: 434 HADFGEGVTAFVVLXREF-----APSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGA 488
Query: 504 IQKHLLRAKAKEM 516
           +Q ++LR    ++
Sbjct: 489 VQXNVLRETYXDI 501

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 154/373 (41%), Gaps = 42/373 (11%)
Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 215
           A+ YTSGTT    G ++SH      SL     W      V +  LP++H +G     ++ 
Sbjct: 159 AILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 216 ALC-GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 274
               G+ I L       +   +A    T     P     +   SP  T    T  + +  
Sbjct: 219 LFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQ-SPRLTX-ETTGHMRLFI 274
Query: 275 AGAPPPPSLLFAMSQK------GFRITHTYGLTELTGPASVCAWKP-EWDSLPFETQARL 327
           +G+ P    L A + +      G  +   YG+TE     ++    P + D +P       
Sbjct: 275 SGSAP----LLADTHREWSAXTGHAVLERYGMTE----TNMNTSNPYDGDRVP------- 319
Query: 328 NARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
               G     L G+   V D  T   +P     IG I + G  V  GY + P+     F 
Sbjct: 320 ----GAVGPALPGVSARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373
Query: 386 N-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 444
           + G+F +GDL       Y+ I  R  D++I+GG N+   E+E  +   P V+E+AV+  P
Sbjct: 374 DDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 445 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGK 503
              +GE   A V ++     +D+ ++   +      ++  + +P  V+F   LP++  G 
Sbjct: 434 HADFGEGVTA-VVVRDXGATIDEAQVLHGLD----GQLAXFXMPXXVIFVDDLPRNTMGA 488
Query: 504 IQKHLLRAKAKEM 516
           +Q ++LR    ++
Sbjct: 489 VQXNVLRETYXDI 501

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 172/425 (40%), Gaps = 84/425 (19%)
Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI-----WGMNEGAVFLWTLPM 202
           P D    + L YTSG+T +PKGV  S  G YL+   GAL+     +  ++  VF     +
Sbjct: 258 PVDSEDPLFLLYTSGSTGAPKGVQHSTAG-YLL---GALLTMRYTFDTHQEDVFFTAGDI 313
Query: 203 FHGNGWSYTWSLAALCGTSICLRQVT-----AKAVYTAIATHGVTHFCAAPVVLNAIANA 257
               G +Y      L G +  + + T         +  I  H VT F  AP  L  +  A
Sbjct: 314 GWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRA 373
Query: 258 SPEDTIL---PLTNVVNVNTAGAPPPPSLLFAMSQKGFR----ITHTYGLTE----LTGP 306
              D+ +    L ++  + + G P    +    S+K  +    I  TY  TE    L  P
Sbjct: 374 G--DSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTP 431
Query: 307 --ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVM 364
               V   KP   S PF          G+  + LD             P  G+ +     
Sbjct: 432 LAGGVTPMKPGSASFPF---------FGIDAVVLD-------------PNTGEELNTSHA 469
Query: 365 RGSCVMKG--------YLKNPKANEEAFAN---GWFHSGDLAVKHPDNYIEIKDRLKDVI 413
            G   +K           KN     + + N   G++ +GD A K  D YI I  R+ DV+
Sbjct: 470 EGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVV 529
Query: 414 ISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEA-------DELD 466
              G  +S+ E+E  +   P+V E AVV   D+  G++  AFV LK ++       DEL 
Sbjct: 530 NVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDEL- 588
Query: 467 KGKLAEDVSKF----CRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLR----AKAKEMG 517
                +D+ K      R  +  +  PK ++    LPK+ +GKI + +LR     ++ ++G
Sbjct: 589 -----QDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLG 643
Query: 518 PVKMI 522
            V  +
Sbjct: 644 DVSTL 648

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 146/376 (38%), Gaps = 56/376 (14%)
Query: 159 YTSGTTASPKGVVVSHR---GAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW-SYTWSL 214
           +TSG+T  PKGV+  HR   G YL    G    G     VFL   P+     W ++   L
Sbjct: 221 FTSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPV----SWDAFGLEL 272
Query: 215 -AALCGTSICLRQVTAK----AVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 269
             AL   + C+ Q         +   +A HGVT    +  + N + +  PE        V
Sbjct: 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----AFEGV 328
Query: 270 VNVNTAGAPP--PPSLLFAMSQKGFRITHTYGLTE---LTGPASVCAWKPEWDSLPFETQ 324
               T G P   P            R+ + YG  E    T   +V A      +LP    
Sbjct: 329 RYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVP 388
Query: 325 ARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 384
                  G R   LD         +   PA    +GE+ + G+ +  GY+  P    E F
Sbjct: 389 L-----AGKRAYVLD---------DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERF 434
Query: 385 ---------ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLV 435
                        + +GDLA +  D  +E   R  D +   G  +   EVE  L  HP V
Sbjct: 435 VADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAV 494
Query: 436 LEAAVVARPDERWGESP-CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP-KSVVF 493
            +AAV+A+ D R G+    A+V     A+  D    A ++ +     +P+Y VP + V  
Sbjct: 495 RQAAVLAQ-DSRLGDKQLVAYVV----AERADAPPDAAELRRHVAEALPAYMVPVECVPV 549
Query: 494 AALPKSATGKIQKHLL 509
             LP++  GK+ +  L
Sbjct: 550 DELPRTPNGKLDRRAL 565

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 121/505 (23%), Positives = 199/505 (39%), Gaps = 51/505 (10%)
Query: 35  PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 94
           P VP    A       GAV + I    +   VA  +  +SS +VI   E           
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSI--P 197
Query: 95  MEANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
           ++ N +  LK P      H+IV+     D   +++   R  + +   +E   PE   +  
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKRTGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAM 253
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGN 206
             E   + + YTSG+T  PKGV+ +  G YL+  +     ++  + G ++  T  +    
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 207 GWSYTWSLAALCG-TSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPE 260
           G SY       CG T++    V    T   +   +  H V     AP  + A+ A     
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 261 DTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 316
                 +++  + +AG P  P         + ++   +  T+  TE  G          +
Sbjct: 372 IEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----------F 421
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
              P      L A    R        ++D   N+  P +G T G +V+  S    G  + 
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVD---NEGHPQEGATEGNLVITDS--WPGQART 476
Query: 377 PKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
              + E F   +F        SGD A +  D Y  I  R+ DV+   G  + + E+E  L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
             HP + EAAVV  P    G++  A+VTL     E    +L  +V  + R ++     P 
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVRKEIGPLATPD 594
Query: 490 SVVFA-ALPKSATGKIQKHLLRAKA 513
            + +  +LPK+ +GKI + +LR  A
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 120/505 (23%), Positives = 198/505 (39%), Gaps = 51/505 (10%)
Query: 35  PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 94
           P VP    A       GAV + I    +   VA  +  +SS +VI   E           
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSI--P 197
Query: 95  MEANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
           ++ N +  LK P      H+IV+     D   +++   R  + +   +E   PE   +  
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKRTGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAM 253
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGN 206
             E   + + YTSG+T  PKGV+ +  G YL+  +     ++  + G ++  T  +    
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 207 GWSYTWSLAALCG-TSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPE 260
           G SY       CG T++    V    T   +   +  H V     AP  + A+ A     
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 261 DTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 316
                 +++  + + G P  P         + ++   +  T+  TE  G          +
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----------F 421
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
              P      L A    R        ++D   N+  P +G T G +V+  S    G  + 
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVD---NEGHPQEGATEGNLVITDS--WPGQART 476
Query: 377 PKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
              + E F   +F        SGD A +  D Y  I  R+ DV+   G  + + E+E  L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
             HP + EAAVV  P    G++  A+VTL     E    +L  +V  + R ++     P 
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVRKEIGPLATPD 594
Query: 490 SVVFA-ALPKSATGKIQKHLLRAKA 513
            + +  +LPK+ +GKI + +LR  A
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 121/505 (23%), Positives = 200/505 (39%), Gaps = 51/505 (10%)
Query: 35  PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 94
           P VP    A       GAV + I    +   VA  +  +SS +VI   E   +   A   
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE--GVRAGASIP 197
Query: 95  MEANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
           ++ N +  LK P      H+IV+     D   +++   R  + +   +E   PE   +  
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKRTGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAM 253
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGN 206
             E   + + YTSG+T  PKGV+ +  G YL+  +     ++  + G ++  T  +    
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 207 GWSYTWSLAALCG-TSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPE 260
           G SY       CG T++    V    T   +   +  H V     AP  + A+ A     
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 261 DTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 316
                 +++  + + G P  P         + ++   +  T+  TE  G          +
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----------F 421
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
              P      L A    R        ++D   N+  P +G T G +V+  S    G  + 
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVD---NEGHPQEGATEGNLVITDS--WPGQART 476
Query: 377 PKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
              + E F   +F        SGD A +  D Y  I  R+ DV+   G  + + E+E  L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
             HP + EAAVV  P    G++  A+VTL     E    +L  +V  + R ++     P 
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVRKEIGPLATPD 594
Query: 490 SVVFA-ALPKSATGKIQKHLLRAKA 513
            + +  +LPK+ +GKI + +LR  A
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 120/505 (23%), Positives = 198/505 (39%), Gaps = 51/505 (10%)
Query: 35  PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 94
           P VP    A       GAV + I    +   VA  +  +SS +VI   E           
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSI--P 197
Query: 95  MEANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
           ++ N +  LK P      H+IV+     D   +++   R  + +   +E   PE   +  
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKRTGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAM 253
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGN 206
             E   + + YTSG+T  PKGV+ +  G YL+  +     ++  + G ++  T  +    
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 207 GWSYTWSLAALCG-TSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPE 260
           G SY       CG T++    V    T   +   +  H V     AP  + A+ A     
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 261 DTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 316
                 +++  + + G P  P         + ++   +  T+  TE  G          +
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----------F 421
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
              P      L A    R        ++D   N+  P +G T G +V+  S    G  + 
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVD---NEGHPQEGATEGNLVITDS--WPGQART 476
Query: 377 PKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
              + E F   +F        SGD A +  D Y  I  R+ DV+   G  + + E+E  L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
             HP + EAAVV  P    G++  A+VTL     E    +L  +V  + R ++     P 
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVRKEIGPLATPD 594
Query: 490 SVVFA-ALPKSATGKIQKHLLRAKA 513
            + +  +LPK+ +GKI + +LR  A
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 110/482 (22%), Positives = 197/482 (40%), Gaps = 76/482 (15%)
Query: 45  FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 104
            G   AGA    ++ +L    ++++L+ +++A ++  QE   + E+A ++          
Sbjct: 532 LGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQE---MKEQAAELP--------Y 580
Query: 105 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTT 164
           T   + I D++   +Q                   DP  A  P +  +    + YTSGTT
Sbjct: 581 TGTTLFIDDQTRFEEQ-----------------ASDPATAIDPNDPAY----IMYTSGTT 619
Query: 165 ASPKGVVVSHRGAYLMSLNGALIW-GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSIC 223
             PKG + +H  A +  L   + +   ++   FL ++  +  + +++ +  + L    + 
Sbjct: 620 GKPKGNITTH--ANIQGLVKHVDYMAFSDQDTFL-SVSNYAFDAFTFDFYASMLNAARLI 676
Query: 224 LRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPP 279
           +      +  + +   I    V    A   + N + +A  ED +  L  ++      + P
Sbjct: 677 IADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG-EDWMKGLRCILFGGERASVP 735
Query: 280 PPSLLFAMSQKGFRITHTYGLTELT--GPASVCAWKPE-WDSLPFETQARLNARQGVRTI 336
                  +   G ++ + YG TE T    A V    P+   SLP             + I
Sbjct: 736 HVRKALRIMGPG-KLINCYGPTEGTVFATAHVVHDLPDSISSLPIG-----------KPI 783
Query: 337 CLDGLDVIDARTN-QPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF------ 389
               + +++ ++  QP  A    +GE+ + G  V KGY+      +E F    F      
Sbjct: 784 SNASVYILNEQSQLQPFGA----VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETL 839
Query: 390 -HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 448
             +GDLA   PD  IE   R+ D +   G  I   E+EK L  +P V +A VVA   E  
Sbjct: 840 YRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESG 899
Query: 449 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKH 507
             S  A++  + +         AEDV    + ++P+Y VP++  F   LP +  GK+ K 
Sbjct: 900 DASINAYLVNRTQLS-------AEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKR 952
Query: 508 LL 509
           LL
Sbjct: 953 LL 954

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 119/505 (23%), Positives = 197/505 (39%), Gaps = 51/505 (10%)
Query: 35  PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 94
           P VP    A       GAV + I    +   VA  +  +SS +VI   E           
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSI--P 197
Query: 95  MEANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
           ++ N +  LK P      H+IV+     D   +++   R  + +   +E   PE   +  
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKRTGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAM 253
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGN 206
             E   + + YTSG+T  PKGV+ +  G YL+  +     ++  + G ++  T  +    
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 207 GWSYTWSLAALCG-TSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPE 260
           G SY       CG T++    V    T   +   +  H V     AP  + A+ A     
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 261 DTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 316
                 +++  + + G P  P         + ++   +  T+  TE  G          +
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----------F 421
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
              P      L A    R        ++D   N+  P +G T G +V+  S    G  + 
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVD---NEGHPQEGATEGNLVITDS--WPGQART 476
Query: 377 PKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
              + E F   +F        SGD A +  D Y  I  R+ DV+   G  + + E+E  L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
             HP + EAAVV  P    G++  A+VTL     E    +L  +V  + R ++     P 
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVRKEIGPLATPD 594
Query: 490 SVVFA-ALPKSATGKIQKHLLRAKA 513
            + +  +LPK+ +G I + +LR  A
Sbjct: 595 VLHWTDSLPKTRSGAIMRRILRKIA 619

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 119/505 (23%), Positives = 197/505 (39%), Gaps = 51/505 (10%)
Query: 35  PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 94
           P VP    A       GAV + I    +   VA  +  +SS +VI   E           
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSI--P 197
Query: 95  MEANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
           ++ N +  LK P      H+IV+     D   +++   R  + +   +E   PE   +  
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKRTGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAM 253
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGN 206
             E   + + YTSG+T  PKGV+ +  G YL+  +     ++  + G ++  T  +    
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 207 GWSYTWSLAALCG-TSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPE 260
           G SY       CG T++    V    T   +   +  H V     AP  + A+ A     
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 261 DTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 316
                 +++  + + G P  P         + ++   +  T+  TE  G          +
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----------F 421
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
              P      L A    R        ++D   N+  P +G T G +V+  S    G  + 
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVD---NEGHPQEGATEGNLVITDS--WPGQART 476
Query: 377 PKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
              + E F   +F        SGD A +  D Y  I  R+ DV+   G  + + E+E  L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
             HP + EAAVV  P    G++  A+VTL     E    +L  +V  +   ++     P 
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVEKEIGPLATPD 594
Query: 490 SVVFA-ALPKSATGKIQKHLLRAKA 513
            + +  +LPK+ +GKI + +LR  A
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 119/505 (23%), Positives = 197/505 (39%), Gaps = 51/505 (10%)
Query: 35  PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 94
           P VP    A       GAV + I    +   VA  +  +SS +VI   E           
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSI--P 197
Query: 95  MEANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
           ++ N +  LK P      H+IV+     D   +++   R  + +   +E   PE   +  
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKRTGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAM 253
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGN 206
             E   + + YTSG+T  PKGV+ +  G YL+  +     ++  + G ++  T  +    
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 207 GWSYTWSLAALCG-TSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPE 260
           G SY       CG T++    V    T   +   +  H V     AP  + A+ A     
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 261 DTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 316
                 +++  + + G P  P         + ++   +  T+  TE  G          +
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----------F 421
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
              P      L A    R        ++D   N+  P +G T G +V+  S    G  + 
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVD---NEGHPQEGATEGNLVITDS--WPGQART 476
Query: 377 PKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
              + E F   +F        SGD A +  D Y  I  R+ DV+   G  + + E+E  L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
             HP + EAAVV  P    G++  A+VTL     E    +L  +V  +   ++     P 
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVAKEIGPLATPD 594
Query: 490 SVVFA-ALPKSATGKIQKHLLRAKA 513
            + +  +LPK+ +GKI + +LR  A
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 156/375 (41%), Gaps = 54/375 (14%)
Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP-MFHGNGWSYTWSLA-- 215
           +TSGTT  PKGV +SH    L+S      W + + A  +   P M     +S+  S+   
Sbjct: 152 FTSGTTGQPKGVQISHDN--LLSFTN---WMIEDAAFDVPKQPQMLAQPPYSFDLSVMYW 206
Query: 216 ----ALCGTSICL-RQVTA--KAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTN 268
               AL GT   L +++ A  K ++T IA   V  + + P   + +A  S +     +  
Sbjct: 207 APTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFAD-MAMLSDDFCQAKMPA 265
Query: 269 VVNVNTAGAPPPPSLLFAMSQKGF------RITHTYGLTELTGPASVCAWKPEWDSLPFE 322
           + +    G      L  + ++K F      +I + YG TE T   S      E      +
Sbjct: 266 LTHFYFDGE----ELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM----VD 317
Query: 323 TQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTI-----GEIVMRGSCVMKGYLKNP 377
              RL            G    D+ T   +  DGK +     GEI++ G  V KGYL NP
Sbjct: 318 NYTRLPI----------GYPKPDSPT-YIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNP 366
Query: 378 KANEEAF----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 433
           +   EAF        +H+GD+     DN +    RL   I   G  I   +V + L   P
Sbjct: 367 EKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSP 426
Query: 434 LVLEAAVVARPD-ERWGESPCAFVTLKPEADE-LDKG-KLAEDVSKFCRAKMPSYWVPKS 490
           +V  A  V R + E   ++  A++ +K    E  D+  +L + +    +  M SY +P  
Sbjct: 427 MVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSK 486
Query: 491 VVFA-ALPKSATGKI 504
            ++  +LP +  GKI
Sbjct: 487 FLYRDSLPLTPNGKI 501

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 142/362 (39%), Gaps = 38/362 (10%)
Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNE-GAVFLWTLPMFHGNGWSYTWSLAAL 217
           YTSGTT +PKG ++ H+G   + +       + E   +  +    F  + W    +L   
Sbjct: 189 YTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTG 248
Query: 218 CGTSICLRQVTAKAVY--TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTA 275
               I L+      V     I    +T     P     + +  PE  IL +  ++   TA
Sbjct: 249 ASLYIILKDTINDFVKFEQYINQKEITVITLPPTY---VVHLDPE-RILSIQTLI---TA 301
Query: 276 GAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT 335
           G+   PSL+    +K   I + YG TE T  A+      E         A +   Q    
Sbjct: 302 GSATSPSLVNKWKEKVTYI-NAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQ---- 356
Query: 336 ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF------ 389
                + ++D   N  + + G+  GE+ + G  + +GY K P+   + F +  F      
Sbjct: 357 -----IYIVDE--NLQLKSVGEA-GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKL 408
Query: 390 -HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 448
             +GD A    D  IE   R+ + +   G  +   EVE +L  H  + E AV    D + 
Sbjct: 409 YKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQE 468
Query: 449 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV-FAALPKSATGKIQKH 507
               CA+          +K    E + +F   ++P+Y +P   +    +P ++ GKI + 
Sbjct: 469 QPYLCAYFV-------SEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRK 521
Query: 508 LL 509
            L
Sbjct: 522 QL 523

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 162/383 (42%), Gaps = 49/383 (12%)
Query: 149 EDEW----QSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPM 202
           +D+W    ++  + YTSG+T +PKGV +S   A L S    +   + ++ G +FL   P 
Sbjct: 136 QDQWVKEHETFYIIYTSGSTGNPKGVQIS--AANLQSFTDWICADFPVSGGKIFLNQAP- 192
Query: 203 FHGNGWSYTWSLAAL--C----GTSICLRQVTA---KAVYTAIATHGVTHFCAAP-VVLN 252
                +S+  S+  L  C    GT  C+ +      K ++  +   G+  + + P  V  
Sbjct: 193 -----FSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQM 247
Query: 253 AIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVC 310
            + +      +LP  +       G   P S+  A+ ++    +I +TYG TE T   +V 
Sbjct: 248 CLMDPGFSQDLLPHADTFMF--CGEVLPVSVAKALLERFPKAKIFNTYGPTEAT--VAVT 303
Query: 311 AWKPEWDSLPFETQARLN-ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV 369
           + +   D +       +  A+  +    +D          QP+P   K  GEIV+ G  V
Sbjct: 304 SVEITNDVISRSESLPVGFAKPDMNIFIMD-------EEGQPLPEGEK--GEIVIAGPSV 354
Query: 370 MKGYLKNPKANEEAF---ANGW-FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEV 425
            +GYL  P+  E+AF      W + +GD      D  I  + RL   I   G  +   E+
Sbjct: 355 SRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELEEI 413
Query: 426 EKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG-KLAEDVSKFCRAKMPS 484
           E  +     V  A V+  P +  G        + PE  E +K  +L   + K   A +P+
Sbjct: 414 EFHVRQSQYVRSAVVI--PYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPA 471
Query: 485 YWVPKSVVFA-ALPKSATGKIQK 506
           Y +P+  ++   +  +A GKI +
Sbjct: 472 YMIPRKFIYQDHIQMTANGKIDR 494

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 344 IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYI 403
           I+ R     P   + +G I + G  +  GY  +  + +E  A GW  +GDL     D Y+
Sbjct: 395 IEIRNEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL-DGYL 453
Query: 404 EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVA 442
            +  R+KD+II  G NI   ++E +    P +     +A
Sbjct: 454 YVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIA 492

>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 159/393 (40%), Gaps = 43/393 (10%)
Query: 138 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFL 197
           T +PE A K  E+ +    + YTSG+T +PKGV +++      +      + +  G VFL
Sbjct: 134 TPNPEHAVKGDENFY----IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFL 189
Query: 198 WTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLN-A 253
              P          +      GT   + +      K ++ ++    +  + + P      
Sbjct: 190 NQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249
Query: 254 IANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFR--ITHTYGLTE----LTGPA 307
           +  AS  +++LP  N+      G   P  +   + ++  +  I +TYG TE    +TG  
Sbjct: 250 LMEASFSESMLP--NMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIH 307
Query: 308 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS 367
                  ++ SLP                C     ++  + +  +  DG+  GEIV+ G 
Sbjct: 308 VTEEVLDQYKSLPV-------------GYCKSDCRLLIMKEDGTIAPDGEK-GEIVIVGP 353
Query: 368 CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD-NYIE-----IKDRLKDVIISGGENIS 421
            V  GYL +P+  E+AF       G+ A K  D  Y+E        RL   I   G  + 
Sbjct: 354 SVSVGYLGSPELTEKAFT---MIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRME 410
Query: 422 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG-KLAEDVSKFCRA 480
             E+E  L     V  A +V  P ++  +       + P     +K  KL   + K    
Sbjct: 411 LEEIEHHLRACSYVEGAVIV--PIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNE 468
Query: 481 KMPSYWVPKSVVF-AALPKSATGKIQKHLLRAK 512
           ++P+Y +P+  ++ +++P +  GK+ +  L ++
Sbjct: 469 RLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSE 501

>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 157/390 (40%), Gaps = 43/390 (11%)
Query: 138 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFL 197
           T +PE A K  E+ +    + YTSG+T +PKGV +++      +      + +  G VFL
Sbjct: 134 TPNPEHAVKGDENFY----IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFL 189
Query: 198 WTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLN-A 253
              P          +      GT   + +      K ++ ++    +  + + P      
Sbjct: 190 NQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249
Query: 254 IANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFR--ITHTYGLTE----LTGPA 307
           +  AS  +++LP  N+      G   P  +   + ++  +  I +TYG TE    +TG  
Sbjct: 250 LMEASFSESMLP--NMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIH 307
Query: 308 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS 367
                  ++ SLP                C     ++  + +  +  DG+  GEIV+ G 
Sbjct: 308 VTEEVLDQYKSLPV-------------GYCKSDCRLLIMKEDGTIAPDGEK-GEIVIVGP 353
Query: 368 CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD-NYIE-----IKDRLKDVIISGGENIS 421
            V  GYL +P+  E+AF       G+ A K  D  Y+E        RL   I   G  + 
Sbjct: 354 SVSVGYLGSPELTEKAFT---MIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRME 410
Query: 422 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG-KLAEDVSKFCRA 480
             E+E  L     V  A +V  P ++  +       + P     +K  KL   + K    
Sbjct: 411 LEEIEHHLRACSYVEGAVIV--PIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNE 468
Query: 481 KMPSYWVPKSVVF-AALPKSATGKIQKHLL 509
           ++P+Y +P+  ++ +++P +  GK+ +  L
Sbjct: 469 RLPNYMIPRKFMYQSSIPMTPNGKVDRKKL 498

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 352 VPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG---------WFHSGDLAVKHPDNY 402
           +P D   +GEI ++ + V KGY   P+    AFA           +  +GDL   H +N 
Sbjct: 392 IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENE 450
Query: 403 IEIKDRLKDVIISGGENISSVEVEKVLYLHPL 434
           + +  R+KD+II  G+N    ++E  L   PL
Sbjct: 451 LYVTGRIKDLIIIYGKNHYPQDIEFSLXHSPL 482

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 143/375 (38%), Gaps = 53/375 (14%)
Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT-WSLAAL 217
           YTSGTT +PKGV V H     +      ++  +    +L    +FH   + ++ W +   
Sbjct: 182 YTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWL----LFHSLSFDFSVWEIWGA 237
Query: 218 CGTSICLRQV------TAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNV 269
             T   L  +      T +     I   GVT     P    A+  A+      +  L  V
Sbjct: 238 FSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDVSGLRYV 297
Query: 270 VNVNTAGAPP---PPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 326
           +        P   P +  F + +   R+ + YG+TE T   +       + +       R
Sbjct: 298 IFGGEKLTAPMLRPWAKAFGLDRP--RLVNGYGITETTVFTTFEEITEAYLAQDASIIGR 355
Query: 327 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN 386
                G R +  DG DV          A G+T GE+ + G+ + +GYL+ P+   E F  
Sbjct: 356 ALPSFGTRVVGDDGRDV----------APGET-GELWLSGAQLAEGYLRRPELTAEKFPE 404
Query: 387 ----------GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL 436
                      ++ +GDL  + PD     + R    I   G  I   ++E  +  H  V+
Sbjct: 405 VTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVV 464
Query: 437 EAAVVARP----DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP-KSV 491
           +A V  R     D R     CA+V  +  A        A ++    +  +P+Y  P + +
Sbjct: 465 DAVVTVREFKPGDLRL---VCAYVAREGSA------TTARELRNHIKTLLPAYMHPARYL 515
Query: 492 VFAALPKSATGKIQK 506
               LP++  GK+ +
Sbjct: 516 PLPGLPRTVNGKVDR 530

>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 95/277 (34%), Gaps = 57/277 (20%)
Query: 159 YTSGTTASPKGVVVSHR---GAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWS-- 213
           +TSG+T  PKGV+  HR   G YL    G    G     VFL   P+        +W   
Sbjct: 221 FTSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPV--------SWDAF 268
Query: 214 ----LAALCGTSICLRQVTAK----AVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP 265
                 AL   + C+ Q         +   +A HGVT    +  + N + +  PE     
Sbjct: 269 GLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----A 324
Query: 266 LTNVVNVNTAGAPP--PPSLLFAMSQKGFRITHTYGLTE---LTGPASVCAWKPEWDSLP 320
              V    T G P   P            R+ + YG  E    T   +V A      +LP
Sbjct: 325 FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALP 384
Query: 321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
                      G R   LD         +   PA    +GE+ + G+ +  GY+  P   
Sbjct: 385 IGVPL-----AGKRAYVLD---------DDLKPAANGALGELYVAGAGLAHGYVSRPALT 430
Query: 381 EEAF---------ANGWFHSGDLAVKHPDNYIEIKDR 408
            E F             + +GDLA +  D  +E   R
Sbjct: 431 AERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467

>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 135/365 (36%), Gaps = 55/365 (15%)
Query: 157 LGYTSGTTASPKGVVVS-HRGAYLMSLNGALIWGMNEGAVFLWTLPMF----------HG 205
           L YTSG+T +PKGV VS H  +      G LI  +   ++ L  +  F          H 
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI 239
Query: 206 NGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP 265
                 W    LC  +   R      +       GVTH    P +L+      PED   P
Sbjct: 240 GEXFLAWRFG-LCAVT-GERLSXLDDLPRTFRELGVTHAGIVPSLLDQTG-LVPEDA--P 294
Query: 266 LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQA 325
               + V      P    +++ S +   + + YG TE+T   S     P+ D        
Sbjct: 295 HLVYLGVGGEKXTPRTQQIWSSSDR-VALVNVYGPTEVTIGCSAGRILPDSD-------- 345
Query: 326 RLNARQGVRTICLDGLDVIDARTNQPVPADGKTI-----GEIVMRGSCVMKGYLKNPKAN 380
                    T C+ G  + D+  +   P   + +     GE+V+ GS V  GYL  P A 
Sbjct: 346 ---------TRCI-GHPLGDSVAHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDAK 395
Query: 381 EEAFANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLY-LHPLVLE 437
                NG   + +GD+     D+ I    R  + +   G+ +   EV +V+  L P  ++
Sbjct: 396 GFCDINGRKXYRTGDIVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDID 455
Query: 438 AAVVARPDERWGESPCAFVTLKPEADELDKGKLA----------EDVSKFCRAKMPSYWV 487
             VV       G S    V+    +    +G+L             + + C   +P+Y V
Sbjct: 456 --VVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYXV 513
Query: 488 PKSVV 492
           P  ++
Sbjct: 514 PDFII 518

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	526
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	0.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	1e-147
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	1e-144
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-142
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	1e-125
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-115
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-112
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-107
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-105
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	1e-104
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-103
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-102
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-95
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	3e-95
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	4e-95
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	7e-79
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	3e-77
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-64
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-38
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-37
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-26
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	3e-25
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	8e-25
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	3e-24
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	2e-23
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-23
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	6e-23
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-21
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	1e-19
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	2e-19
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  643 bits (1662), Expect = 0.0
 Identities = 154/496 (31%), Positives = 231/496 (46%), Gaps = 34/496 (6%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V+ +  N     EA F  P  GAVL++ N RL+   +A+IL+HA   V++ D    
Sbjct: 71  VGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL 130

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
            L E     ++          H +V+ +++ +          G + YE+ L         
Sbjct: 131 PLVEAIRGELK-------TVQHFVVMDEKAPE----------GYLAYEEALGEEADPVRV 173

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMF 203
                E  +  + YT+GTT  PKGVV SHR   L SL  +L+    ++E  V L  +PMF
Sbjct: 174 ----PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMF 229

Query: 204 HGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT 262
           H N W   ++   +    +    ++   ++       GVT     P V  A+A+   E T
Sbjct: 230 HVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY-LEST 288

Query: 263 ILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFE 322
              L  +  +   G+  P SL+    + G  +   YGLTE +        K   +SL  E
Sbjct: 289 GHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 348

Query: 323 TQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 382
            +  L A+ G+    +  L V D    +PVP DGK +GE+ ++G  +  GY  N +A   
Sbjct: 349 EKLTLKAKTGLPIPLVR-LRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRS 406

Query: 383 AF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 441
           A   +G+F +GD+AV   + Y+EIKDRLKD+I SGGE ISSV++E  L  HP V EAAVV
Sbjct: 407 ALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVV 466

Query: 442 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSA 500
           A P  +W E P A V  + E          E      +A    + +P + VF   +P+++
Sbjct: 467 AIPHPKWQERPLAVVVPRGEKP-----TPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTS 521

Query: 501 TGKIQKHLLRAKAKEM 516
            GK  K  LR + K  
Sbjct: 522 AGKFLKRALREQYKNY 537

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  431 bits (1110), Expect = e-147
 Identities = 99/489 (20%), Positives = 180/489 (36%), Gaps = 41/489 (8%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
             V +   N            +A   +  IN RL    +   +      ++         
Sbjct: 49  SRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELR 108

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
             + + + +    G+  T + ++                      E  +    P      
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQ----------YDTSNETVVPKESPSNILNT 158

Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 207
             +     ++ +TSGTT   K V  + R  Y  ++      G +    +L  LP++H +G
Sbjct: 159 SFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISG 218

Query: 208 WSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 267
            S          T   + +  A+ + T I    +TH    P  LN +      +      
Sbjct: 219 LSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP----Y 274

Query: 268 NVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARL 327
           N+  +   GA    +++    Q    I +++G+TE           PE            
Sbjct: 275 NLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTAT--PEM----------- 321

Query: 328 NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG 387
                  T+ +   +V D +       + +  GE++++G+ VM GYL         F NG
Sbjct: 322 -LHARPDTVGMPSANV-DVKI---KNPNKEGHGELMIKGANVMNGYLYPTDL-TGTFENG 375

Query: 388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 447
           +F++GD+A    + Y+ I DR KD+IISGGENI   ++E V    P + +A  V  PD+ 
Sbjct: 376 YFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDT 435

Query: 448 WGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQK 506
           WG+ P  +   + +  +         +  +    +  Y VPK       LP ++TGK+Q+
Sbjct: 436 WGQVPKLYFVSESDISK-------AQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQR 488

Query: 507 HLLRAKAKE 515
           + L  +   
Sbjct: 489 NKLYREGHH 497

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  425 bits (1094), Expect = e-144
 Identities = 141/486 (29%), Positives = 210/486 (43%), Gaps = 45/486 (9%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           D V+++ PN        +GA   GAV   IN RL A  V+FILS + S VVI       +
Sbjct: 69  DRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPV 128

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
            +            +   P  +                  GA    + L +   +     
Sbjct: 129 IDAI--------RAQADPPGTVTDWI--------------GADSLAERLRSAAADEPAVE 166

Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 207
              +  ++ + YTSGTT  PKGVV +H   +  + + A    +      L  LPMFH   
Sbjct: 167 CGGD-DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAA 225

Query: 208 WSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 267
            +     A    T I + Q  A  V++ I    V    A P +LN +    PE   L   
Sbjct: 226 LTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQV-PEFAELDAP 284

Query: 268 NVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARL 327
           +     T GAP P +L+   + K   +   Y LTE  G  ++            E   R 
Sbjct: 285 DFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLS---------EDALRK 335

Query: 328 NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG 387
               G  T+  D + V                GE+V++   ++K Y   P+A  +AF NG
Sbjct: 336 AGSAGRATMFTD-VAVRGD-DGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNG 390

Query: 388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 447
           WF +GD+     + Y+ IKDRLKD+IISGGEN+   E+E V+   P V E AV+  PDE+
Sbjct: 391 WFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEK 450

Query: 448 WGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQK 506
           WGE   A V      +E+      + + ++C  ++  Y +PK V+F  A+P++ TGKI K
Sbjct: 451 WGEIAAAIVVADQ--NEVS----EQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILK 504

Query: 507 HLLRAK 512
            +LR +
Sbjct: 505 TVLREQ 510

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  417 bits (1074), Expect = e-142
 Identities = 119/494 (24%), Positives = 191/494 (38%), Gaps = 57/494 (11%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V++++ N   M E      + GA+L  +N RLNA  +AF+L   + +VV+   ++ 
Sbjct: 55  TGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR 114

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
            +    L  +               IGD            +     ++            
Sbjct: 115 DIVAGVLPSLGG-------VKKAYAIGDG-----------SGPFAPFKDLASDTPFSAPE 156

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
               D +    + +T+     P+G ++S     +   +    W + E  V L  LP+FH 
Sbjct: 157 FGAADGFV---IIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHV 213

Query: 206 NGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP 265
            G     +L    G S+   +         I  H VT       +L  I +         
Sbjct: 214 TGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQ-AAPA--Q 270

Query: 266 LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDS----LPF 321
           L ++  V     P       A          T+G +E +G ++   ++    S    L +
Sbjct: 271 LASLRAVTGLDTPETIERFEAT-CPNATFWATFGQSETSGLSTFAPYRDRPKSAGRPLFW 329

Query: 322 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 381
                                V+DA    P+P     +GEIV+RG  V KGY  N  A +
Sbjct: 330 -RTVA----------------VVDAEDR-PLPPG--EVGEIVLRGPTVFKGYWNNAAATQ 369

Query: 382 EAFANGWFHSGDLAVKHPDNYIEIKDRL--KDVIISGGENISSVEVEKVLYLHPLVLEAA 439
            AF NGW H+GD+     D Y+    R   K++I +GGEN+   EVE  L  HP + +A 
Sbjct: 370 HAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAV 429

Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPK 498
           V+  PD +W E+  A    KP    +     A+ +++F  + +  Y  PK VVF  ALPK
Sbjct: 430 VIGVPDPQWSEAIKAVCVCKPGE-SIA----ADALAEFVASLIARYKKPKHVVFVEALPK 484

Query: 499 SATGKIQKHLLRAK 512
            A G I +  ++  
Sbjct: 485 DAKGAIDRAAVKTA 498

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  373 bits (961), Expect = e-125
 Identities = 123/501 (24%), Positives = 196/501 (39%), Gaps = 64/501 (12%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
           P   V+V+APN   +  A       GAV   +N RL +  +A ++        ++     
Sbjct: 53  PQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ 112

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
                                 +I +GD   D +   Y       +     E   P    
Sbjct: 113 VADAIF---------QSGSGARIIFLGDLVRDGEPYSYGPPIEDPQ----REPAQP---- 155

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMF 203
                      + YTSGTT  PK  ++  R A    L  +   G+  G   V L  +P++
Sbjct: 156 ---------AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLY 206

Query: 204 HGNGWSYTWSLAALC--GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED 261
           H  G+     +AAL   GT + + +         +    VT   A P  L+A+A A    
Sbjct: 207 HVVGFF-AVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAA-AAH 264

Query: 262 TILP--LTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDS 318
                 L ++ +V  AGA  P ++L  + Q       + YG TE      +   K   + 
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEM 324

Query: 319 LP-FETQARLNARQGVRTICLDGLDVIDART--NQPVPADGKTIGEIVMRGS-CVMKGYL 374
            P F ++ R                ++      ++ V       GE+++  S     GYL
Sbjct: 325 APGFFSEVR----------------IVRIGGGVDEIVANG--EEGELIVAASDSAFVGYL 366

Query: 375 KNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPL 434
             P+A  E   +GW+ + D+AV  P+  + I  R+ D+IISGGENI   E+E+VL   P 
Sbjct: 367 NQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPG 426

Query: 435 VLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVF 493
           V E  V+   D+RWG+S  A V  +     L     A+ +  FCR+ ++  +  PK    
Sbjct: 427 VTEVVVIGLADQRWGQSVTACVVPRLGE-TLS----ADALDTFCRSSELADFKRPKRYFI 481

Query: 494 A-ALPKSATGKIQKHLLRAKA 513
              LPK+A  K+ +  L  + 
Sbjct: 482 LDQLPKNALNKVLRRQLVQQV 502

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  349 bits (898), Expect = e-115
 Identities = 112/503 (22%), Positives = 177/503 (35%), Gaps = 65/503 (12%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V+                  AG V   +N       + + ++ A   +V+ D    
Sbjct: 52  VGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKR 111

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
                             K    +                  G              FA 
Sbjct: 112 DGIAAIAA----------KVGATVETLGPD------------GRGSLTDAAAGASEAFAT 149

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
                +    A+ YTSGTT   KG ++SH      SL     W      V +  LP++H 
Sbjct: 150 IDRGAD-DLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHT 208

Query: 206 NGWSYTWSLAALC--GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI 263
           +G     S   L   G+ I L +     +   +A    T     P     +  + P  T 
Sbjct: 209 HGLF-VASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQS-PRLTK 264

Query: 264 LPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLP-- 320
               ++    +  AP         S K G  +   YG+TE T      +   + D +P  
Sbjct: 265 ETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTE-TNM--NTSNPYDGDRVPGA 321

Query: 321 -----FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 375
                    AR                V D  T + +P     IG I ++G  V KGY +
Sbjct: 322 VGPALPGVSAR----------------VTDPETGKELPRG--DIGMIEVKGPNVFKGYWR 363

Query: 376 NPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPL 434
            P+  +  F  +G+F +GDL       Y+ I  R KD++I+GG N+   E+E  +   P 
Sbjct: 364 MPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPG 423

Query: 435 VLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF- 493
           V+E+AV+  P   +GE   A V     A  +D       V      ++  + +PK V+F 
Sbjct: 424 VVESAVIGVPHADFGEGVTAVVVRDKGA-TID----EAQVLHGLDGQLAKFKMPKKVIFV 478

Query: 494 AALPKSATGKIQKHLLRAKAKEM 516
             LP++  GK+QK++LR   K++
Sbjct: 479 DDLPRNTMGKVQKNVLRETYKDI 501

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  345 bits (888), Expect = e-112
 Identities = 110/497 (22%), Positives = 190/497 (38%), Gaps = 43/497 (8%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
           P +   V   NV  +Y   F     G            + +    S    A++I D++  
Sbjct: 74  PGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHA 133

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
             + +            ++   + ++ D              G    +  +     +F  
Sbjct: 134 LFSGDDFLNTFVTEHSSIR--VVQLLNDS-------------GEHNLQDAINHPAEDFTA 178

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
            P   + +      + GTT +PK +  +H   Y        I    +   +L  +P  H 
Sbjct: 179 TPSPAD-EVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHN 237

Query: 206 NGWSYTWSLAALC--GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANAS-PEDT 262
              S   SL      GT +     +A   +  I  H V      P  ++    A    ++
Sbjct: 238 YAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES 297

Query: 263 ILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPF 321
              L ++  +   GA    +L   +  + G ++   +G+ E      V        +   
Sbjct: 298 RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAE----GLVNY------TRLD 347

Query: 322 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 381
           ++  ++   QG      D + V DA    P+P     +G ++ RG    +GY K+P+ N 
Sbjct: 348 DSAEKIIHTQGYPMCPDDEVWVADA-EGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNA 404

Query: 382 EAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 440
            AF ANG++ SGDL    P+ YI ++ R KD I  GGE I++ E+E +L  HP V+ AA+
Sbjct: 405 SAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAAL 464

Query: 441 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVF-AALPK 498
           V+  DE  GE  CA++ +K              V +F R + +  + +P  V    +LP 
Sbjct: 465 VSMEDELMGEKSCAYLVVKEPLRA-------VQVRRFLREQGIAEFKLPDRVECVDSLPL 517

Query: 499 SATGKIQKHLLRAKAKE 515
           +A GK+ K  LR     
Sbjct: 518 TAVGKVDKKQLRQWLAS 534

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  330 bits (849), Expect = e-107
 Identities = 106/496 (21%), Positives = 185/496 (37%), Gaps = 40/496 (8%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D   V  PNV   Y   F    AG V+ +         +   +      ++I  ++  
Sbjct: 79  KGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHE 138

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
             +      +++  +  L    ++++  ++                   ++ET    F  
Sbjct: 139 VFSNNQ--FIDSLHDVNLSPEIILMLNHQA------------TDFGLLDWIETPAETFVD 184

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
                  +      + G+T +PK +  +H          A I G+N     L  LP  H 
Sbjct: 185 FSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHN 244

Query: 206 NGWSYTWSLAALC--GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI 263
              S   +L  L   G  +          ++ I  H V      P  +            
Sbjct: 245 FMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEK-AAQYK 303

Query: 264 LPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFE 322
             + ++  +   GA  P SL   + +    ++   +G+ E      V   + +      E
Sbjct: 304 DQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAE----GLVNYTRLDD---SDE 356

Query: 323 TQARLNARQGVRTIC-LDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 381
                   QG R I   D + ++D    + VP     IG +  RG     GY ++P+ N 
Sbjct: 357 QIF---TTQG-RPISSDDEIKIVDE-QYREVPEG--EIGMLATRGPYTFCGYYQSPEHNS 409

Query: 382 EAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 440
           + F  + +++SGDL  + PD  + +  R+KD I  GGE I+S E+EK++ LHP V+ AA+
Sbjct: 410 QVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAAL 469

Query: 441 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKS 499
           VA  DE++GE  CAF+  +         K            +  Y +P  +    +LP +
Sbjct: 470 VAIVDEQFGEKSCAFIVSRNPEL-----KAVVLRRHLMELGIAQYKLPDQIKLIESLPLT 524

Query: 500 ATGKIQKHLLRAKAKE 515
           A GK+ K  LR+    
Sbjct: 525 AVGKVDKKQLRSILNT 540

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  325 bits (836), Expect = e-105
 Identities = 109/500 (21%), Positives = 189/500 (37%), Gaps = 52/500 (10%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEF- 84
             D V V  PN+   +E  F     GA+         ++ + +    A +A  I+   + 
Sbjct: 74  QKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYS 133

Query: 85  -FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEF 143
            F     A ++       K    ++IV G+            A   +  E  L T   + 
Sbjct: 134 GFDYRSLARQVQSKLPTLK----NIIVAGE------------AEEFLPLED-LHTEPVKL 176

Query: 144 AWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMF 203
                 D      L  + G+T   K +  +H            +  ++   V+L  LPM 
Sbjct: 177 PEVKSSDV---AFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMA 233

Query: 204 HGNGWSYTWSLAALC--GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED 261
           H    S    L  L   G  +     +    +  I    VT     P +     +A    
Sbjct: 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDA-ASS 292

Query: 262 TILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPE-WDSL 319
               L+++  +   GA         +    G  +   +G+ E      V   + +  + +
Sbjct: 293 RRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAE----GLVNYTRLDDPEEI 348

Query: 320 PFETQAR-LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPK 378
              TQ + ++     R        V D   ++ V       G ++ RG   ++GY K  +
Sbjct: 349 IVNTQGKPMSPYDESR--------VWDD-HDRDVKPG--ETGHLLTRGPYTIRGYYKAEE 397

Query: 379 ANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 437
            N  +F  +G++ +GD+     D YI ++ R KD I  GGE +++ EVE  L  HP V +
Sbjct: 398 HNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHD 457

Query: 438 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVF-AA 495
           AA+V+ PD+  GE  C F+  + EA +      A ++  F R + + +Y +P  V F  +
Sbjct: 458 AAMVSMPDQFLGERSCVFIIPRDEAPK------AAELKAFLRERGLAAYKIPDRVEFVES 511

Query: 496 LPKSATGKIQKHLLRAKAKE 515
            P++  GK+ K  LR    E
Sbjct: 512 FPQTGVGKVSKKALREAISE 531

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  321 bits (826), Expect = e-104
 Identities = 116/502 (23%), Positives = 187/502 (37%), Gaps = 59/502 (11%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
           P + + ++  +  A+  A  GA  AG V    N  L      ++L+H+ +  VI      
Sbjct: 72  PEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV 131

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEF-- 143
               +AL+          +     +I  +  +      +  R A  +E+ ++   P    
Sbjct: 132 QNVTQALE--------SAEHDGCQLIVSQPRE------SEPRLAPLFEELIDAAAPAAKA 177

Query: 144 AWKPPEDEWQSIA-LGYTSGTTASPKGVVVSHRGAYLMS-LNGALIWGMNEGAVFLWTLP 201
           A    +D    IA   Y+SG+T  PKG V +H   Y  + L    I G+ E  V      
Sbjct: 178 AATGCDD----IAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAK 233

Query: 202 MFHGNGWSYTWSLAALCGTSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASP 259
           +F   G     +     G +  L   + TA A++  +  H  T F   P +   +  + P
Sbjct: 234 LFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVS-P 292

Query: 260 EDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDS 318
                    +    +AG   P  +    +   G  I    G TE      +         
Sbjct: 293 NLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTE-MLHIFLSN--RAGAV 349

Query: 319 ------LPFE-TQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK 371
                  P    +                  + D      VP     +G++ ++G     
Sbjct: 350 EYGTTGRPVPGYEIE----------------LRDE-AGHAVPDG--EVGDLYIKGPSAAV 390

Query: 372 GYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 431
            Y  N + +   F   W  SGD   + P+       R  D++   G+ +S VEVE VL  
Sbjct: 391 MYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ 450

Query: 432 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV 491
           H  VLEAAVV        +   AFV LK E    +   LAE++  F + ++  +  P+ +
Sbjct: 451 HDAVLEAAVVGVDHGGLVK-TRAFVVLKREFAPSE--ILAEELKAFVKDRLAPHKYPRDI 507

Query: 492 VF-AALPKSATGKIQKHLLRAK 512
           VF   LPK+ATGKIQ+  LR +
Sbjct: 508 VFVDDLPKTATGKIQRFKLREQ 529

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  319 bits (819), Expect = e-103
 Identities = 116/497 (23%), Positives = 182/497 (36%), Gaps = 72/497 (14%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
            +  V+V A        A   A +AG     +N +     +A ILS ++ ++V+   +  
Sbjct: 67  GAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDA- 125

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
                                               E   A GA+E              
Sbjct: 126 ------------------------------------ELPPALGALERVDVDVRARGAVPE 149

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
              +D   +  + YTSGTT  PKG V+  R         A  W      V +  LP+FH 
Sbjct: 150 DGADDGDPA-LVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHV 208

Query: 206 NGWSYTWSLAALCG-TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 264
           +G           G +   L + + +     +   G T     P + + IA   P D  L
Sbjct: 209 HGLVLGILGPLRRGGSVRHLGRFSTEGAARELN-DGATMLFGVPTMYHRIAETLPADPEL 267

Query: 265 P--LTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVC----AWKPEWD 317
              L     + +  A  P      ++   G R+   YG+TE T   +        +    
Sbjct: 268 AKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTE-TLMNTSVRADGEPRAGTV 326

Query: 318 SLPFE-TQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
            +P    + R                +++         DG+++GEI +RG  +   YL  
Sbjct: 327 GVPLPGVELR----------------LVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNR 370

Query: 377 PKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDR-LKDVIISGGENISSVEVEKVLYLHPL 434
           P A   AF  +G+F +GD+AV+ PD Y+ I  R   D+I SGG  I + E+E  L  HP 
Sbjct: 371 PDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPE 430

Query: 435 VLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF- 493
           V EAAV   PD   GE   A++     A           ++    A++  +  P+ V + 
Sbjct: 431 VREAAVTGEPDPDLGERIVAWIVPADPAAPPA----LGTLADHVAARLAPHKRPRVVRYL 486

Query: 494 AALPKSATGKIQKHLLR 510
            A+P++  GKI K  L 
Sbjct: 487 DAVPRNDMGKIMKRALN 503

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  316 bits (813), Expect = e-102
 Identities = 112/511 (21%), Positives = 202/511 (39%), Gaps = 65/511 (12%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             + V V  PN        +      A    IN    +  +  IL+ + +  ++V    +
Sbjct: 76  KGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY 135

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
              +  L+        K     + V+G E                   + +++G  +F  
Sbjct: 136 ENFKPVLE--------KTGVERVFVVGGE--------------VNSLSEVMDSGSEDFEN 173

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
                E     + YT GTT  PKGV+++H      +L  A+  G++     +  +PMFH 
Sbjct: 174 VKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHS 233

Query: 206 NGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANAS-PEDTIL 264
             +     +  +    + +     + +   I  +  T   A P  LN + N     +   
Sbjct: 234 AEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTY 293

Query: 265 PLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHT-------YGLTELTGPASVCAWKPEW 316
             + +    T   P  P+L+  + +    +  +        +G+TE     +        
Sbjct: 294 DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLD 353

Query: 317 DS----LP-FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK 371
            S    +P  + + +                VI     + +       GEIV+RG  + K
Sbjct: 354 KSTTQGVPMSDIELK----------------VISLEDGRELGVG--ESGEIVIRGPNIFK 395

Query: 372 GYLKNPKANEEAF-----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVE 426
           GY K  K N+E +        +F +GD+     + ++  +DR+K+VI   G  I+  E+E
Sbjct: 396 GYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELE 455

Query: 427 KVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEAD-ELDKGKLAEDVSKFCRAKMPSY 485
            +L  H  V++ AV+ +PDE  GE P AF+ LKPE   ++D     ED+ ++ R ++  Y
Sbjct: 456 ALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVD----EEDIIEWVRERISGY 511

Query: 486 WVPKSVVF-AALPKSATGKIQKHLLRAKAKE 515
              + V F   LP++A+GK+ + LLR K  E
Sbjct: 512 KRVREVEFVEELPRTASGKLLRRLLREKEAE 542

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  299 bits (768), Expect = 1e-95
 Identities = 113/503 (22%), Positives = 210/503 (41%), Gaps = 55/503 (10%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D++ +  P+ P    A  GA   GA++ + N       +A     + + ++I    ++
Sbjct: 73  QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYY 132

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
              ++  +          ++   ++  D +            G + + +  +  + E   
Sbjct: 133 EKVKDFAR----------ESDVKVMCVDSA----------PDGCLHFSELTQADENEA-- 170

Query: 146 KPPEDEWQSIA-LGYTSGTTASPKGVVVSHRG----AYLMSLNGALIWGMNEGAVFLWTL 200
              +     +  L Y+SGTT  PKGV+++H+G                  +   V L  L
Sbjct: 171 PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVL 230

Query: 201 PMFHGNGWSYTWSLAALCG-TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASP 259
           PMFH    +         G   + + +    ++   I  + V+     P V+ +IA  SP
Sbjct: 231 PMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAK-SP 289

Query: 260 EDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWD 317
           +     L+++  + + GAP    L   +  K    R+   YG+TE     ++C     + 
Sbjct: 290 DLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMC---LAFA 346

Query: 318 SLPFETQA----RLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY 373
             PF+ +      +     ++        ++D  T   +P +    GEI +RG  +MKGY
Sbjct: 347 KEPFDIKPGACGTVVRNAEMK--------IVDPETGASLPRN--QPGEICIRGDQIMKGY 396

Query: 374 LKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 432
           L +P+A        GW H+GD+     D+ + I DRLK++I   G  ++  E+E +L  H
Sbjct: 397 LNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAH 456

Query: 433 PLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV 492
           P + +AAVV   DE  GE P AFV    ++ +       +++ ++   ++  Y   K V 
Sbjct: 457 PEISDAAVVGLKDEDAGEVPVAFVVKSEKS-QAT----EDEIKQYISKQVIFYKRIKRVF 511

Query: 493 F-AALPKSATGKIQKHLLRAKAK 514
           F  A+PK+ +GKI +  L+ K  
Sbjct: 512 FIEAIPKAPSGKILRKNLKEKLA 534

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  299 bits (767), Expect = 3e-95
 Identities = 108/509 (21%), Positives = 187/509 (36%), Gaps = 64/509 (12%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
             +++ + N    +         G  +   N       +   L  +   +V   ++    
Sbjct: 78  GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP------ 141
                K         + T   IVI D   D +        G    + F++   P      
Sbjct: 138 VITVQK--------TVTTIKTIVILDSKVDYR--------GYQCLDTFIKRNTPPGFQAS 181

Query: 142 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAY---LMSLNGALIWGMNEGAVFLW 198
            F     + + Q   +  +SG+T  PKGV ++H         + +      ++ G   L 
Sbjct: 182 SFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLT 241

Query: 199 TLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANAS 258
            +P  HG G   T          + L +   +     +  +  T     P +   +   S
Sbjct: 242 VVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNK-S 300

Query: 259 PEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEW 316
                  L+N+V + + GAP    +  A++++     +   YGLTE T         PE 
Sbjct: 301 ELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTS---AIIITPEG 357

Query: 317 DSLP-------FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV 369
           D  P          +A+                VID  T + +  +    GE+ ++G  +
Sbjct: 358 DDKPGASGKVVPLFKAK----------------VIDLDTKKSLGPN--RRGEVCVKGPML 399

Query: 370 MKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKV 428
           MKGY+ NP+A +E     GW H+GD+     + +  I DRLK +I   G  +   E+E V
Sbjct: 400 MKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESV 459

Query: 429 LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WV 487
           L  HP + +A V   PD   GE P A V L+     +      ++V  +  +++ +   +
Sbjct: 460 LLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK-NMT----EKEVMDYVASQVSNAKRL 514

Query: 488 PKSVVF-AALPKSATGKIQKHLLRAKAKE 515
              V F   +PK  TGKI    +R   K+
Sbjct: 515 RGGVRFVDEVPKGLTGKIDGRAIREILKK 543

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  298 bits (766), Expect = 4e-95
 Identities = 114/521 (21%), Positives = 198/521 (38%), Gaps = 68/521 (13%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
             + V + N    +    GA   G  +   N   N   +   ++ +   VV V ++    
Sbjct: 76  HRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQK 135

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP------ 141
                K        KL     I+I D   D         +G      F+ +  P      
Sbjct: 136 ILNVQK--------KLPIIQKIIIMDSKTD--------YQGFQSMYTFVTSHLPPGFNEY 179

Query: 142 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRG---AYLMSLNGALIWGMNEGAVFLW 198
           +F  +  + +     +  +SG+T  PKGV + HR     +  + +      +      L 
Sbjct: 180 DFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILS 239

Query: 199 TLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANAS 258
            +P  HG G   T          + + +   +    ++  + +      P + +  A  S
Sbjct: 240 VVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAK-S 298

Query: 259 PEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEW 316
                  L+N+  + + GAP    +  A++++     I   YGLTE T         PE 
Sbjct: 299 TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTS---AILITPEG 355

Query: 317 DS--------LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC 368
           D         +PF  +A+                V+D  T + +  +    GE+ +RG  
Sbjct: 356 DDKPGAVGKVVPF-FEAK----------------VVDLDTGKTLGVN--QRGELCVRGPM 396

Query: 369 VMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEK 427
           +M GY+ NP+A       +GW HSGD+A    D +  I DRLK +I   G  ++  E+E 
Sbjct: 397 IMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELES 456

Query: 428 VLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY-W 486
           +L  HP + +A V   PD+  GE P A V L+     +      +++  +  +++ +   
Sbjct: 457 ILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK-TMT----EKEIVDYVASQVTTAKK 511

Query: 487 VPKSVVF-AALPKSATGKIQKHLLRAKAKEMGPVKMIKGKL 526
           +   VVF   +PK  TGK+    +R    +    K  K KL
Sbjct: 512 LRGGVVFVDEVPKGLTGKLDARKIREILIKA--KKGGKSKL 550

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  265 bits (679), Expect = 7e-79
 Identities = 117/506 (23%), Positives = 205/506 (40%), Gaps = 49/506 (9%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           D+V ++ PN P    +   A   GA   + N       +A     +++ ++I +  +   
Sbjct: 114 DVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDK 173

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
            +                  + +  +ES    +       G + + +  ++         
Sbjct: 174 IKPLQN--------DDGVVIVCIDDNESVPIPE-------GCLRFTELTQSTTEASEVID 218

Query: 148 PEDEWQS--IALGYTSGTTASPKGVVVSHRG----AYLMSLNGALIWGMNEGAVFLWTLP 201
             +      +AL Y+SGTT  PKGV+++H+G                  +   V L  LP
Sbjct: 219 SVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLP 278

Query: 202 MFHGNGWSYTWSLAALCG-TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE 260
           MFH    +         G   + + +     +   I    VT     P ++ AIA  S E
Sbjct: 279 MFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAK-SSE 337

Query: 261 DTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDS 318
                L+++  V +  AP    L  A++ K    ++   YG+TE     ++      +  
Sbjct: 338 TEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMS---LGFAK 394

Query: 319 LPFETQA----RLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYL 374
            PF  ++     +     ++        ++D  T   +  +    GEI +RG  +MKGYL
Sbjct: 395 EPFPVKSGACGTVVRNAEMK--------IVDPDTGDSLSRN--QPGEICIRGHQIMKGYL 444

Query: 375 KNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 433
            NP A  E    +GW H+GD+ +   D+ + I DRLK++I   G  ++  E+E +L  HP
Sbjct: 445 NNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHP 504

Query: 434 LVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF 493
            + + AVVA  +E  GE P AFV    +++        +DV +F   ++  Y     V F
Sbjct: 505 DITDVAVVAMKEEAAGEVPVAFVVKSKDSEL-----SEDDVKQFVSKQVVFYKRINKVFF 559

Query: 494 -AALPKSATGKIQKHLLRAKAKEMGP 518
             ++PK+ +GKI +  LRAK      
Sbjct: 560 TESIPKAPSGKILRKDLRAKLANGLG 585

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  252 bits (646), Expect = 3e-77
 Identities = 113/515 (21%), Positives = 190/515 (36%), Gaps = 77/515 (14%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           D V+V+ P VP  +    G   AG +     I++ +T + + L  + +  ++   E    
Sbjct: 100 DRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQE 159

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEF--AW 145
            +       +     L+    +++ ++SCD          G + ++K L           
Sbjct: 160 VDTVASECPS-----LR--IKLLVSEKSCD----------GWLNFKKLLNEASTTHHCVE 202

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
              ++   + A+ +TSGT+  PK    S+    L +   A   G+    +  WT+     
Sbjct: 203 TGSQE---ASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIM-WTIS---D 255

Query: 206 NGWSY-TWS--LAAL-CGTSICL---RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANAS 258
            GW        +     G    +    +     +   ++++ +     AP+V   +    
Sbjct: 256 TGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD 315

Query: 259 PEDTILP-LTNVVNVNTAGAPPPPSLL-FAMSQKGFRITHTYGLTELTGPASVCAW---- 312
                 P L N V   T G    P  L    +Q G  I  +YG TE      V       
Sbjct: 316 LSSYKFPHLQNCV---TVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIK 372

Query: 313 -----KPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS 367
                                            + +ID + N  +P    T G+I +R  
Sbjct: 373 PGYMGTA----AS-----------CYD------VQIIDDKGN-VLPPG--TEGDIGIRVK 408

Query: 368 -----CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISS 422
                 +  GY+ NP          ++  GD  +K  D Y +   R  D+I S G  I  
Sbjct: 409 PIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGP 468

Query: 423 VEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKM 482
            EVE  L  HP V+E AV++ PD   GE   AFV L  +    D  +L +++ +  ++  
Sbjct: 469 SEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVT 528

Query: 483 PSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKEM 516
             Y  P+ + F   LPK+ TGKIQ+  LR K  +M
Sbjct: 529 APYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  218 bits (559), Expect = 2e-64
 Identities = 105/519 (20%), Positives = 181/519 (34%), Gaps = 82/519 (15%)

Query: 28  DLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 87
           D V +   +    +    G    GA+       L    + + +  A   +++   E   +
Sbjct: 112 DYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAED-DV 170

Query: 88  AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 147
            E+  +       G +      V GD              G I++ K LE   P F    
Sbjct: 171 PEQVDEAHA--ECGDIPLKKAKVGGDV-----------LEGWIDFRKELEESSPIFERPT 217

Query: 148 PEDEWQS---IALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTL--PM 202
            E   ++     + ++SGT   PK V   +       L       + +  +  +T+    
Sbjct: 218 GEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLH-YTVADS- 275

Query: 203 FHGNGWSY-TWS--LAAL-CGTSICL---RQVTAKAVYTAIATHGVTHFCAAPVVLNAIA 255
               GW    W         G ++ +    +  AK +    + +GVT FCA P +   + 
Sbjct: 276 ----GWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLI 331

Query: 256 NASPEDTILP-LTNVVNVNTAGAPPPPSLL-FAMSQKGFRITHTYGLTELTGPASVCAW- 312
                      L   V    AG P  P +    +   G ++   +G TE     +   W 
Sbjct: 332 KEDLSHYNFSTLKYAV---VAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM 388

Query: 313 --------KPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVM 364
                   KP     P           G +      ++++D              GEIV+
Sbjct: 389 EPKPGSIGKP----TP-----------GYK------IELMDRDGR-LCEVG--EEGEIVI 424

Query: 365 RG-----SCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGEN 419
                    +   Y K+P+  EE + +G++H+GD+A    D Y+    R  D+I + G  
Sbjct: 425 NTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYK 484

Query: 420 ISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKP--EADELDKGKLAEDVSKF 477
           +   EVE  L  HP VLE A+   PD   G+   A + L       +     L  ++   
Sbjct: 485 VGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSD----SLKNELQDH 540

Query: 478 CRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKE 515
            +     Y  P+ + F   LPK+ +GKI++  +R K + 
Sbjct: 541 VKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  145 bits (367), Expect = 1e-37
 Identities = 102/547 (18%), Positives = 184/547 (33%), Gaps = 106/547 (19%)

Query: 25  SPSDLVSVIAPNVPAMYEAQFGAPMAGAV--------LNSINIRLNATVVAFILSHASSA 76
            P D V ++      + +A  G   AG +           +  +        I++++   
Sbjct: 63  KPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQR-----IVTNSKPV 117

Query: 77  VVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFL 136
           +V++  +      +     E N+  K      I +                         
Sbjct: 118 IVLMIADHI----KKFTADELNTNPKFLKIPAIALESIE--------------------- 152

Query: 137 ETGDPEFAWKPPEDEWQSIA-LGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNE 192
              +   +W+P   +   IA L YTSG+T  PKGV+VSH    L+  N   I   + MN+
Sbjct: 153 --LNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHN--LLD-NLNKIFTSFHMND 207

Query: 193 GAVFL-WTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVY-------TAIATHGVTHF 244
             +   W LP  H  G           G    +  ++  +           I  +  T  
Sbjct: 208 ETIIFSW-LPPHHDMGLIGCILTPIYGGIQAIM--MSPFSFLQNPLSWLKHITKYKATI- 263

Query: 245 CAAP-----VVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLL--F--AMSQKGFR-- 293
             +P       +  I     E   L L++ V       P     +  F  A  + GFR  
Sbjct: 264 SGSPNFAYDYCVKRIREEKKEG--LDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKE 321

Query: 294 -ITHTYGLTELTGPASVCAWKPEWDSLPFET------QARLNARQGVRTICL-------D 339
                YGL E T   +       + +L          +          +  L        
Sbjct: 322 AFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQ 381

Query: 340 GLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN---------GWFH 390
            + +ID  T  P   D   +GEI ++ + V KGY   P+    AFA           +  
Sbjct: 382 EVKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLR 439

Query: 391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEK-VLYLHPLVL--EAAVVARPDER 447
           +GDL   H +N + +  R+KD+II  G+N    ++E  +++     +  + A     +E 
Sbjct: 440 TGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH 498

Query: 448 WGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA---ALPKSATGKI 504
             +            D++ +  L  ++ +             ++V     A+P + +GKI
Sbjct: 499 EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENH--QLEVHTIVLIPLKAMPHTTSGKI 556

Query: 505 QKHLLRA 511
           +++  R 
Sbjct: 557 RRNFCRK 563

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score =  110 bits (278), Expect = 4e-26
 Identities = 79/374 (21%), Positives = 139/374 (37%), Gaps = 52/374 (13%)

Query: 159 YTSGTTASPKGVVVSHRGA--YLMSLNGALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLA 215
           +TSGTT  PKGV +SH     +   +     + + +    L   P  F  +   +  +L 
Sbjct: 152 FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTL- 210

Query: 216 ALCGTSICLR----QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 271
              G ++           K ++T IA   V  + + P   +     S +     +  + +
Sbjct: 211 -ALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAM-LSDDFCQAKMPALTH 268

Query: 272 VNTAGAPPPPSLL--FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 329
               G     S            +I + YG TE T   ++ A +         T+  ++ 
Sbjct: 269 FYFDGEELTVSTARKLFERFPSAKIINAYGPTEAT--VALSAIE--------ITREMVDN 318

Query: 330 RQGV---RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN 386
              +            +ID    + + + G   GEI++ G  V KGYL NP+   EAF  
Sbjct: 319 YTRLPIGYPKPDSPTYIIDED-GKELSS-G-EQGEIIVTGPAVSKGYLNNPEKTAEAFFT 375

Query: 387 GWF----HSGDLAVKHPDNYIEIKDRLKD--VIISG-----GENISSVEVEKVLYLHPLV 435
                  H+GD+     DN +    RL D  +  +G      +      V + L   P+V
Sbjct: 376 FKGQPAYHTGDIGSLTEDNILLYGGRL-DFQIKYAGYRIELED------VSQQLNQSPMV 428

Query: 436 LEAAVVARPDERWGESP--CAFVTLKPEADELDKG--KLAEDVSKFCRAKMPSYWVPKSV 491
             A  V R ++   +     A++ +K    E      +L + +    +  M SY +P   
Sbjct: 429 ASAVAVPRYNKE-HKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKF 487

Query: 492 VF-AALPKSATGKI 504
           ++  +LP +  GKI
Sbjct: 488 LYRDSLPLTPNGKI 501

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score =  108 bits (272), Expect = 3e-25
 Identities = 77/390 (19%), Positives = 124/390 (31%), Gaps = 69/390 (17%)

Query: 159 YTSGTTASPKGVVVSHRG--------AYLMSLNGALIWGMNEGAVFL-WTLPMFHGNGWS 209
           YTSG+T +PKGV VS             L+         +     FL      F  +   
Sbjct: 182 YTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE 241

Query: 210 YTWSLAALCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 267
              +     G       R      +       GVTH    P +L+      PED      
Sbjct: 242 MFLAW--RFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTG-LVPED----AP 294

Query: 268 NVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 326
           ++V +   G    P      S      + + YG TE     ++             +  R
Sbjct: 295 HLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTE----VTIGC-----------SAGR 339

Query: 327 LNARQGVRTI--CLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 382
           +      R I   L      V+   +N+ V   G   GE+V+ GS V  GYL  P A  +
Sbjct: 340 ILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKK-G-MAGELVIEGSLVANGYLNRPDA--K 395

Query: 383 AFANGWFH----SGDLAVKHPDNYIEIKDRLKD-VIISG-----GENISSVEVEKVLYLH 432
            F +        +GD+     D+ I    R  + V + G     G      EV +V+   
Sbjct: 396 GFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELG------EVSEVIRSL 449

Query: 433 PLVLEAAVVARPDERWGESP--CAFVTLKPEAD-------ELDKGKLAEDVSKFCRAKMP 483
                  V    +          +FV     A          +  ++   + + C   +P
Sbjct: 450 SPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLP 509

Query: 484 SYWVPKSVVF-AALP-KSATGKIQKHLLRA 511
           +Y VP  ++  + +P +  + K     L  
Sbjct: 510 AYMVPDFIIPISFIPLRDTSAKTDAKALEH 539

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score =  108 bits (271), Expect = 8e-25
 Identities = 82/377 (21%), Positives = 137/377 (36%), Gaps = 72/377 (19%)

Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIW-GMNEGAVFLWTLPM-FHGNGWSYTWSLAA 216
           YTSGTT  PKG + +H    +  L   + +   ++   FL      F    + +  S+  
Sbjct: 614 YTSGTTGKPKGNITTHAN--IQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASM-- 669

Query: 217 LCGTSICLR----QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNV 272
           L    + +      +  + +   I    V    A   + N + +A  +     +  +  +
Sbjct: 670 LNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW----MKGLRCI 725

Query: 273 NTAGAPPPPSLL--FAMSQKGFRITHTYGLTELTGPASVCA-WKPEWDSLPFETQARL-- 327
              G       +          ++ + YG TE     +V A                   
Sbjct: 726 LFGGERASVPHVRKALRIMGPGKLINCYGPTE----GTVFATA---HVVHDLPDSISSLP 778

Query: 328 ------NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 381
                 NA           + +++ + +Q  P  G  +GE+ + G  V KGY+      +
Sbjct: 779 IGKPISNAS----------VYILNEQ-SQLQPF-G-AVGELCISGMGVSKGYVNRADLTK 825

Query: 382 EAFANGWFH-------SGDLAVKHPDNYIEIKDRLKD-VIISG-----GENISSVEVEKV 428
           E F    F        +GDLA   PD  IE   R+ D V I G            E+EK 
Sbjct: 826 EKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELE------EIEKQ 879

Query: 429 LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP 488
           L  +P V +A VVA   E    S  A++  + +         AEDV    + ++P+Y VP
Sbjct: 880 LQEYPGVKDAVVVADRHESGDASINAYLVNRTQLS-------AEDVKAHLKKQLPAYMVP 932

Query: 489 KSVVF-AALPKSATGKI 504
           ++  F   LP +  GK+
Sbjct: 933 QTFTFLDELPLTTNGKV 949

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score =  105 bits (264), Expect = 3e-24
 Identities = 79/373 (21%), Positives = 134/373 (35%), Gaps = 70/373 (18%)

Query: 159 YTSGTTASPKGVVVSHRGA--YLMSLNGALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLA 215
           YTSGTT +PKG ++ H+G     +    +L   + E         + F  + W    +L 
Sbjct: 189 YTSGTTGNPKGTMLEHKGISNLKVFFENSL--NVTEKDRIGQFASISFDASVWEMFMAL- 245

Query: 216 ALCGTSICLR----QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 271
            L G S+ +               I    +T     P  +  +      + IL +  ++ 
Sbjct: 246 -LTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL----DPERILSIQTLI- 299

Query: 272 VNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQ 331
             TAG+   PSL+    +      + YG TE     ++CA           T        
Sbjct: 300 --TAGSATSPSLVNKWKE-KVTYINAYGPTE----TTICA-----------TTWVATKET 341

Query: 332 GVRTIC----LDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
              ++     +      ++D    Q     G   GE+ + G  + +GY K P+   + F 
Sbjct: 342 IGHSVPIGAPIQNTQIYIVDEN-LQLKSV-G-EAGELCIGGEGLARGYWKRPELTSQKFV 398

Query: 386 NGWFH-------SGDLAVKHPDNYIEIKDRLKD-VIISG-----GENISSVEVEKVLYLH 432
           +  F        +GD A    D  IE   R+ + V I G      E      VE +L  H
Sbjct: 399 DNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEE------VESILLKH 452

Query: 433 PLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV 492
             + E AV    D +     CA+   +            E + +F   ++P+Y +P   +
Sbjct: 453 MYISETAVSVHKDHQEQPYLCAYFVSEKHIP-------LEQLRQFSSEELPTYMIPSYFI 505

Query: 493 F-AALPKSATGKI 504
               +P ++ GKI
Sbjct: 506 QLDKMPLTSNGKI 518

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  102 bits (256), Expect = 2e-23
 Identities = 76/425 (17%), Positives = 130/425 (30%), Gaps = 88/425 (20%)

Query: 25  SPSDLVSVIAPNVPAMYEAQFGAPMAGAV---LNSINIRLNATVVAFILSHASSAVVIVD 81
           S  D V + AP       A  GA  AG +   L+     +       +LS +S   ++  
Sbjct: 80  STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTT 139

Query: 82  QEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP 141
                   + +             P +I +                        L+   P
Sbjct: 140 SSAVDDVVQHVA-----RRPGESPPSIIEVDL----------------------LDLDAP 172

Query: 142 EFAWKPPEDEWQSIA-LGYTSGTTASPKGVVVSHRG------AYLMSLNGALIWGMNEGA 194
              +   EDE+ S A L YTSG+T +P GVV+SH+         +              +
Sbjct: 173 N-GYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNS 231

Query: 195 VFL-WTLPMFHGNGWSYTWSLAALCGTSICL---RQVTAKAVY--TAIATHGVTHFCAAP 248
             + W LP +H  G         L G    L        +       +A+       AAP
Sbjct: 232 ALVSW-LPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAF-SAAP 289

Query: 249 -----VVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLL--F--AMSQKGFR---ITH 296
                +      +         L N++ + +       + +  F    ++   +   I  
Sbjct: 290 NFAFELAARRTTDDDMAG--RDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRP 347

Query: 297 TYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLD-------------V 343
           +Y L E T   +        +++ F+T++ L+A                          +
Sbjct: 348 SYWLAEATVYVATSKPGQPPETVDFDTES-LSAGHAKPCAGGGATSLISYMLPRSPIVRI 406

Query: 344 IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN------------GWFHS 391
           +D+ T    P    T+GEI + G  V  GY + P  +E  F               W  +
Sbjct: 407 VDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRT 464

Query: 392 GDLAV 396
           GD   
Sbjct: 465 GDSGF 469

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score =  101 bits (255), Expect = 4e-23
 Identities = 82/371 (22%), Positives = 144/371 (38%), Gaps = 53/371 (14%)

Query: 159 YTSGTTASPKGVVVSHRGA--YLMSLNGALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLA 215
           YTSG+T +PKGV +S      +   +       ++ G +FL   P  F  +       L 
Sbjct: 150 YTSGSTGNPKGVQISAANLQSFTDWICADF--PVSGGKIFLNQAPFSFDLSVMDLYPCL- 206

Query: 216 ALCGTSICL----RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 271
              G ++           K ++  +   G+  + + P  +       P  +   L +   
Sbjct: 207 -QSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCL-MDPGFSQDLLPHADT 264

Query: 272 VNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 329
               G   P S+  A+ ++    +I +TYG TE    A+V            E    + +
Sbjct: 265 FMFCGEVLPVSVAKALLERFPKAKIFNTYGPTE----ATV-------AVTSVEITNDVIS 313

Query: 330 RQGVRTI--CLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF- 384
           R     +      ++  ++D    QP+P  G   GEIV+ G  V +GYL  P+  E+AF 
Sbjct: 314 RSESLPVGFAKPDMNIFIMDEE-GQPLPE-G-EKGEIVIAGPSVSRGYLGEPELTEKAFF 370

Query: 385 AN-G--WFHSGDLAVKHPDNYIEIKDRLKD--VIISG-----GENISSVEVEKVLYLHPL 434
           ++ G   + +GD A    D  I  + RL D  + + G      E      +E  +     
Sbjct: 371 SHEGQWAYRTGD-AGFIQDGQIFCQGRL-DFQIKLHGYRMELEE------IEFHVRQSQY 422

Query: 435 VLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF- 493
           V  A V+        E   A +  +    E  + +L   + K   A +P+Y +P+  ++ 
Sbjct: 423 VRSAVVIPYQPNGTVEYLIAAIVPEEHEFE-KEFQLTSAIKKELAASLPAYMIPRKFIYQ 481

Query: 494 AALPKSATGKI 504
             +  +A GKI
Sbjct: 482 DHIQMTANGKI 492

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score =  101 bits (253), Expect = 6e-23
 Identities = 74/377 (19%), Positives = 132/377 (35%), Gaps = 65/377 (17%)

Query: 159 YTSGTTASPKGVVVSHRGA--YLMSLNGALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLA 215
           YTSG+T +PKGV +++     +           +  G VFL   P  F  +      SL 
Sbjct: 151 YTSGSTGNPKGVQITYNCLVSFTKWAVEDF--NLQTGQVFLNQAPFSFDLSVMDIYPSL- 207

Query: 216 ALCGTSICLR----QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 271
            + G ++           K ++ ++    +  + + P             +   L N+  
Sbjct: 208 -VTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCL-MEASFSESMLPNMKT 265

Query: 272 VNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 329
               G   P  +   + ++     I +TYG TE    A+V                 +  
Sbjct: 266 FLFCGEVLPNEVARKLIERFPKATIMNTYGPTE----ATV-------AVTGIHVTEEVLD 314

Query: 330 RQGVRTICLDG-------LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 382
           +     +   G       L ++        P  G   GEIV+ G  V  GYL +P+  E+
Sbjct: 315 QYKSLPV---GYCKSDCRLLIMKED-GTIAPD-G-EKGEIVIVGPSVSVGYLGSPELTEK 368

Query: 383 AFANGWFH-------SGDLAVKHPDNYIEIKDRLKD--VIISG-----GENISSVEVEKV 428
           AF             +GD A    +  +    RL D  + + G      E      +E  
Sbjct: 369 AFT---MIDGERAYKTGD-AGYVENGLLFYNGRL-DFQIKLHGYRMELEE------IEHH 417

Query: 429 LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP 488
           L     V  A +V        +   A V     + E  + KL   + K    ++P+Y +P
Sbjct: 418 LRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFE-KEFKLTSAIKKELNERLPNYMIP 476

Query: 489 KSVVF-AALPKSATGKI 504
           +  ++ +++P +  GK+
Sbjct: 477 RKFMYQSSIPMTPNGKV 493

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 97.2 bits (243), Expect = 2e-21
 Identities = 63/375 (16%), Positives = 114/375 (30%), Gaps = 72/375 (19%)

Query: 159 YTSGTTASPKGVVVSHRG-AYLMSLNGALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAA 216
           ++SGTT  PK +  +H G   L                FL   P+ F         +L  
Sbjct: 171 FSSGTTGRPKAIACTHAGITRLCLGQSF--LAFAPQMRFLVNSPLSFDAATLEIWGAL-- 226

Query: 217 LCGTSICLR---QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVN 273
           L G    L     +    +   I   G         + N + +  P+     L  +  + 
Sbjct: 227 LNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDC----LGGLRQLL 282

Query: 274 TAGAPPPPSLL--FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQ 331
           T G       +    +      + + YG TE     +                  +    
Sbjct: 283 TGGDILSVPHVRRALLRHPRLHLVNGYGPTE----NTTFT-----------CCHVVTDDD 327

Query: 332 GVRTIC-----LDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 384
                      + G    ++D    Q +       GEIV  G+ + +GY  +      +F
Sbjct: 328 LEEDDIPIGKAIAGTAVLLLDEH-GQEIAEPD-RAGEIVAFGAGLAQGYRNDAARTRASF 385

Query: 385 ANGWFH--------SGDLAVKHPDNYIEIKDRLKD-VIISG-----GENISSVEVEKVLY 430
               +         +GD A       +    R    V ++G             +E+   
Sbjct: 386 VELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPA------LEQRFR 439

Query: 431 LHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKS 490
             P +L+ A++ R      +  CA+     +AD            +    ++P++  P +
Sbjct: 440 RQPGILDCALLVRERNGVKQLLCAWT---GKADASP---------QALLRQLPTWQRPHA 487

Query: 491 VVF-AALPKSATGKI 504
            V   ALP +A GK+
Sbjct: 488 CVRVEALPLTAHGKL 502

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 91.5 bits (228), Expect = 1e-19
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 3/129 (2%)

Query: 387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 446
             + SGD A +  D Y  I  R+ DV+   G  + + E+E  L  HP + EAAVV  P  
Sbjct: 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHA 553

Query: 447 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 505
             G++  A+VTL    +     +L  +V  + R ++     P  + +  +LPK+ +GKI 
Sbjct: 554 IKGQAIYAYVTLNHGEEPSP--ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIM 611

Query: 506 KHLLRAKAK 514
           + +LR  A 
Sbjct: 612 RRILRKIAA 620

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 91.1 bits (227), Expect = 2e-19
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 6/134 (4%)

Query: 387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 446
           G++ +GD A K  D YI I  R+ DV+   G  +S+ E+E  +   P+V E AVV   D+
Sbjct: 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 562

Query: 447 RWGESPCAFVTLKP-----EADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSA 500
             G++  AFV LK       A + +   + + +    R  +  +  PK ++    LPK+ 
Sbjct: 563 LTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTR 622

Query: 501 TGKIQKHLLRAKAK 514
           +GKI + +LR    
Sbjct: 623 SGKIMRRILRKILA 636

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 74.0 bits (181), Expect = 2e-14
 Identities = 32/272 (11%), Positives = 70/272 (25%), Gaps = 45/272 (16%)

Query: 132 YEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLM---SLNGALIW 188
               L                    +  + GTT +PK VV        +    ++G    
Sbjct: 71  ISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHR 130

Query: 189 GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIA----------- 237
                   L  +P       +     A   G       +  + V  +++           
Sbjct: 131 PGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYT 190

Query: 238 ------------THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLF 285
                          +      P VL  +    PE  +    ++  +   G       + 
Sbjct: 191 HHLVDQVQNTLMNQDIRFLVTTPPVLRELL-KRPEVVLQMKQSLAQITLGGTELNLDEIK 249

Query: 286 AMSQK---GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLD 342
            ++ +       + +YG T   G +       E   + +++ +                 
Sbjct: 250 FIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFS---PFITYD-------- 298

Query: 343 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYL 374
           V+D+ T Q V   G   G +++  + +     
Sbjct: 299 VVDSITAQTVE-YG-ERGNVIV--THLSPWAF 326

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 9e-08
 Identities = 86/559 (15%), Positives = 160/559 (28%), Gaps = 166/559 (29%)

Query: 69  ILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYAL-AR 127
           ILS    A V  + +   + ++  K + +  E      H+I+  D    + +L + L ++
Sbjct: 21  ILSVFEDAFV-DNFDCKDV-QDMPKSILSKEEID----HIIMSKDAVSGTLRLFWTLLSK 74

Query: 128 GAIEYEKFLETG---DPEFAWKPPEDEWQSIALG-----------YTSGTTASPKGV--- 170
                +KF+E     + +F   P + E +  ++            Y      +   V   
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 171 --VVSHRGAYLMSLN---GALIWGM---------------------NEGAVFLW-TLPMF 203
              +  R A L+ L      LI G+                      +  +F W  L   
Sbjct: 135 QPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNL--- 189

Query: 204 HGNGWSYTWSLA---ALC------GTSICLRQVTAKAVYTAIATHGVTHFCAAP-----V 249
             N  S    L     L        TS        K    +I         + P     +
Sbjct: 190 -KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 250 VLNAIANASPEDT------ILPLT---NVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGL 300
           VL  + NA   +       IL  T    V +  +A      SL           T     
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL--DHHSMTL--TPDEVK 304

Query: 301 T-----------ELTGPASVCAWKP---------------EWDSLPFETQARLNARQGVR 334
           +           +L  P  V    P                WD+       +L     + 
Sbjct: 305 SLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT---II 359

Query: 335 TICLDGLDVIDART----------NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 384
              L+ L+  + R           +  +P     +  ++         +    K++    
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPT--ILL-SLI---------WFDVIKSDVMVV 407

Query: 385 ANGWFHSGDLAVKHPDNY-IEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 443
            N   H   L  K P    I I     ++          V++E    LH  +++   + +
Sbjct: 408 VNK-LHKYSLVEKQPKESTISIPSIYLEL---------KVKLENEYALHRSIVDHYNIPK 457

Query: 444 PDERWGESPCAFVTLKPEADE---------LDKGKLAEDVSKFCRAKMPSY-WVPKSVVF 493
             +     P       P  D+         L   +  E ++ F R     + ++ + +  
Sbjct: 458 TFDSDDLIP-------PYLDQYFYSHIGHHLKNIEHPERMTLF-RMVFLDFRFLEQKIRH 509

Query: 494 AALPKSATGKIQKHLLRAK 512
            +   +A+G I   L + K
Sbjct: 510 DSTAWNASGSILNTLQQLK 528

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	526
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.97
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.53
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.49
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.88
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.87
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.72
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	85.59
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	84.69
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	83.19

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.4e-76  Score=604.36  Aligned_cols=467  Identities=22%  Similarity=0.301  Sum_probs=403.9

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        31 y~eL~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~  106 (503)
T 4fuq_A           31 YAELVARAGRVANV-L---VARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC  106 (503)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+........         ..++.++....             ..+.+........ .......++++++|+||
T Consensus       107 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~T  163 (503)
T 4fuq_A          107 DPSKRDGIAAIAAKVG---------ATVETLGPDGR-------------GSLTDAAAGASEA-FATIDRGADDLAAILYT  163 (503)
T ss_dssp             CGGGTTTTHHHHHHHT---------CEEEECCTTSC-------------SHHHHHHHTSCSC-CCCCCCCTTSEEEEEEC
T ss_pred             CchhhHHHHHHHhhcC---------ceEEEecCCcc-------------cccchhhhcCCCC-cCcCCCCCCCeEEEEEC
Confidence            9887666555544433         23444433211             1222222222211 12223578899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecccCHHHHHHHHHhc
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQVTAKAVYTAIATH  239 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  239 (526)
                      |||||.||+|+++|+++.+........+++++++++++.+|++|.+++.. .+..++.|+++++.+.+++..+++.++  
T Consensus       164 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~--  241 (503)
T 4fuq_A          164 SGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--  241 (503)
T ss_dssp             C--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT--
T ss_pred             CCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHh--
Confidence            99999999999999999999999888999999999999999999998654 556777888888888899999999998  


Q ss_pred             CceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCCCCC
Q 009756          240 GVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEWDS  318 (526)
Q Consensus       240 ~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~  318 (526)
                      ++|+++++|+++..|++........ ++++|.+++||+++++++.+.+. .+++++++.||+||++..++...       
T Consensus       242 ~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-------  313 (503)
T 4fuq_A          242 RATVLMGVPTFYTRLLQSPRLTKET-TGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-------  313 (503)
T ss_dssp             TCCEEEECHHHHHHHHTCTTCSTTT-TTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-------
T ss_pred             hcCEEEEHHHHHHHHHhCCCccccc-hhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-------
Confidence            8999999999999999987666555 88999999999999999999998 45999999999999986543211       


Q ss_pred             CCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeecCceeEE
Q 009756          319 LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVK  397 (526)
Q Consensus       319 ~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~~  397 (526)
                          ......+++|.|++++ +++|+|+++|++++.|  +.|||+++|++++.||+++++.+...|. +|||+|||+|++
T Consensus       314 ----~~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~  386 (503)
T 4fuq_A          314 ----DGDRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKI  386 (503)
T ss_dssp             ----SSCCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEE
T ss_pred             ----CCCCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEE
Confidence                0112236899999999 6999998889999998  8999999999999999999999999996 899999999999


Q ss_pred             cCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHH
Q 009756          398 HPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKF  477 (526)
Q Consensus       398 ~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~  477 (526)
                      ++||.+++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|+..++...     ..++++++
T Consensus       387 ~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~-----~~~~l~~~  461 (503)
T 4fuq_A          387 DERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATI-----DEAQVLHG  461 (503)
T ss_dssp             CTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC-----CHHHHHHH
T ss_pred             cCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCC-----CHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999889999999999877655     56889999


Q ss_pred             HHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          478 CRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       478 l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      ++++|+.|++|+.+.+++ ||+|++||++|++|++++.+.
T Consensus       462 l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  501 (503)
T 4fuq_A          462 LDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI  501 (503)
T ss_dssp             HBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred             HHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence            999999999999999988 999999999999999998653

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=1.1e-76  Score=610.26  Aligned_cols=475  Identities=23%  Similarity=0.353  Sum_probs=409.7

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        52 y~el~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~  127 (536)
T 3ni2_A           52 YADVELTARRVASG-L---NKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLIT  127 (536)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +.+....+.+......         ..++.++...           .+...++++........ ......++++++|+||
T Consensus       128 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~T  186 (536)
T 3ni2_A          128 QACYYEKVKDFARESD---------VKVMCVDSAP-----------DGCLHFSELTQADENEA-PQVDISPDDVVALPYS  186 (536)
T ss_dssp             CGGGTHHHHHHHHHHT---------CEEEESSCCC-----------TTCEETHHHHTSCGGGC-CCCCCCTTSEEECCEE
T ss_pred             ChHHHHHHHHHHhhcC---------ceEEEecCCC-----------CCccCHHHHhhcccccc-ccCCCCccCEEEEEcC
Confidence            9988777776655432         3455554321           23455666655433222 2233578899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHh----HhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecccCHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGAL----IWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQVTAKAVYTA  235 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~  235 (526)
                      |||||.||+|+++|+++.+.+.....    .+.+.+++++++.+|++|.+++.. .+.++..|+++++.+.+++..+++.
T Consensus       187 SGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~  266 (536)
T 3ni2_A          187 SGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGL  266 (536)
T ss_dssp             CTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHH
T ss_pred             CCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHH
Confidence            99999999999999999887766543    346789999999999999999854 5566777888888888999999999


Q ss_pred             HHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccccC
Q 009756          236 IATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCAWK  313 (526)
Q Consensus       236 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~  313 (526)
                      ++++++|++.++|+++..|.+........ ++++|.+++|||++++++.++++ .+ ++++++.||+||++++++.+...
T Consensus       267 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~  345 (536)
T 3ni2_A          267 IEKYKVSIAPVVPPVMMSIAKSPDLDKHD-LSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAF  345 (536)
T ss_dssp             HHHHTCCEEEECHHHHHHHHTCSCGGGSC-CTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGG
T ss_pred             HHHhCCeEEEccHHHHHHHHhCcccccCC-CccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhccccc
Confidence            99999999999999999999887655555 89999999999999999999998 45 89999999999998776654321


Q ss_pred             CCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh-cCCeeecC
Q 009756          314 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSG  392 (526)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tG  392 (526)
                      ..      .......+++|.|++++ +++|+|+++|++++.|  +.|||+++|++++.||+++++.+...| .+|||+||
T Consensus       346 ~~------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TG  416 (536)
T 3ni2_A          346 AK------EPFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTG  416 (536)
T ss_dssp             SS------SCCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEE
T ss_pred             CC------ccccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeCcccchhhcCChhHHHhhccCCCceEcc
Confidence            11      01112347899999999 6999998889999988  899999999999999999999999999 58999999


Q ss_pred             ceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHH
Q 009756          393 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAE  472 (526)
Q Consensus       393 D~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  472 (526)
                      |+|++++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|+..++...     ..+
T Consensus       417 Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~-----~~~  491 (536)
T 3ni2_A          417 DIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQA-----TED  491 (536)
T ss_dssp             EEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC-----CHH
T ss_pred             cEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCC-----CHH
Confidence            999999999999999999999999999999999999999999999999999999889999999998876554     568


Q ss_pred             HHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          473 DVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       473 ~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                      +++++++++|+.|++|+.+.+++ ||+|++||++|++|++++.+
T Consensus       492 ~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~  535 (536)
T 3ni2_A          492 EIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG  535 (536)
T ss_dssp             HHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred             HHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence            99999999999999999999988 99999999999999988754

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=1.1e-76  Score=607.20  Aligned_cols=470  Identities=29%  Similarity=0.402  Sum_probs=405.4

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        46 y~eL~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~  121 (517)
T 3r44_A           46 YAQMNALANRCADV-L---TALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIY  121 (517)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +.+....+........       ....++.+...               .++.+.+........ .....++++++|+||
T Consensus       122 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~T  178 (517)
T 3r44_A          122 GAPSAPVIDAIRAQAD-------PPGTVTDWIGA---------------DSLAERLRSAAADEP-AVECGGDDNLFIMYT  178 (517)
T ss_dssp             CGGGHHHHHHHHHSSS-------CCTTCCEEEEH---------------HHHHHHHHHCCCCCC-CCCCCTTSEEEEEEE
T ss_pred             CCchHHHHHHHHhccC-------CccEEEEccCc---------------ccHHHHhhccCcCCC-CCCCCCCCeEEEEEC
Confidence            9988777766654433       12222222111               234444544333222 233578999999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG  240 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  240 (526)
                      |||||.||+|+++|+++.+.+......+++.+++++++.+|++|..++...+..++.|+++++.+.+++..+++.+++++
T Consensus       179 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~  258 (517)
T 3r44_A          179 SGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER  258 (517)
T ss_dssp             CC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTT
T ss_pred             CcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhC
Confidence            99999999999999999999998888899999999999999999999987777777888888888899999999999999


Q ss_pred             ceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCCCCC
Q 009756          241 VTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLP  320 (526)
Q Consensus       241 ~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~  320 (526)
                      +|++.++|+++..|.+........ ++++|.+++|||++++++.+.+.+.++++++.||+||+++.++......      
T Consensus       259 ~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~------  331 (517)
T 3r44_A          259 VCIGGAVPAILNFMRQVPEFAELD-APDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSED------  331 (517)
T ss_dssp             CCEEEECHHHHHHHHHSHHHHHCC-CTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEEECGGG------
T ss_pred             CeEEEeHHHHHHHHHhCcccccCC-CCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceeecCCcc------
Confidence            999999999999998875444444 7899999999999999999999977999999999999987766543211      


Q ss_pred             cccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCC
Q 009756          321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD  400 (526)
Q Consensus       321 ~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~  400 (526)
                         .....+++|.|.+++ +++|+|++ |.+++.+   .|||+++|++++.||+++++.+...|.+|||+|||+|++++|
T Consensus       332 ---~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~d  403 (517)
T 3r44_A          332 ---ALRKAGSAGRATMFT-DVAVRGDD-GVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDE  403 (517)
T ss_dssp             ---TTTTTTCCBEECTTE-EEEEECTT-SCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTT
T ss_pred             ---ccccCCCCCcCCCCe-EEEEECCC-CCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCC
Confidence               122347899999999 69999986 8888775   699999999999999999999999999999999999999999


Q ss_pred             ceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHh
Q 009756          401 NYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA  480 (526)
Q Consensus       401 g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~  480 (526)
                      |++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.+++++ ..++...     ..+++++++++
T Consensus       404 G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~-----~~~~l~~~l~~  477 (517)
T 3r44_A          404 GYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEV-----SEQQIVEYCGT  477 (517)
T ss_dssp             SCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTC-----CHHHHHHHHHH
T ss_pred             eeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCC-----CHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888888888 4444333     45889999999


Q ss_pred             cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          481 KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       481 ~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      +|+.|++|+.+.+++ ||+|++||++|++|++++.+..+
T Consensus       478 ~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~  516 (517)
T 3r44_A          478 RLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVP  516 (517)
T ss_dssp             HSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred             hCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhcc
Confidence            999999999999998 99999999999999999987643

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=1e-76  Score=612.38  Aligned_cols=476  Identities=24%  Similarity=0.352  Sum_probs=373.7

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        55 y~el~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~  130 (549)
T 3g7s_A           55 FLEICEVTKKLASG-I---SRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVV  130 (549)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+........        ...++.++.              ...++++++..............++++++|+||
T Consensus       131 ~~~~~~~~~~~~~~~~--------~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~T  188 (549)
T 3g7s_A          131 HSMLYENFKPVLEKTG--------VERVFVVGG--------------EVNSLSEVMDSGSEDFENVKVNPEEDVALIPYT  188 (549)
T ss_dssp             EGGGHHHHHHHHTTSC--------CCEEEEETC--------------SSSCHHHHHHHSCSCCCCCCCCTTTSEEECCEE
T ss_pred             ChHHHHHHHHHHhhCC--------CcEEEEeCC--------------CCcCHHHHHhcCccccccccCCCCCCEEEEEEC
Confidence            9988777766544332        455555543              224677777665443332222334899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG  240 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  240 (526)
                      |||||.||+|+++|.++.+.+......+++.+++++++.+|++|..++...+.++..|+++++.+.+++..+++.+++++
T Consensus       189 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~  268 (549)
T 3g7s_A          189 GGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYK  268 (549)
T ss_dssp             CCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTT
T ss_pred             CCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhC
Confidence            99999999999999999999998888899999999999999999999888777888899888888899999999999999


Q ss_pred             ceeeeccHHHHHHHHccCCCCC--CCCCCceeeEeccCCCCCHHHHHHHhh-----cC---CeeecccccccCCCCcccc
Q 009756          241 VTHFCAAPVVLNAIANASPEDT--ILPLTNVVNVNTAGAPPPPSLLFAMSQ-----KG---FRITHTYGLTELTGPASVC  310 (526)
Q Consensus       241 ~t~l~~~P~~~~~l~~~~~~~~--~~~l~~lr~~~~~Ge~l~~~~~~~~~~-----~~---~~i~~~YG~tE~~~~~~~~  310 (526)
                      +|+++++|+++..|.+......  .. ++++|.+++||+++++++.+++.+     ++   +++++.||+||++++++..
T Consensus       269 ~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  347 (549)
T 3g7s_A          269 GTFSWAVPPALNVLVNTLESSNKTYD-WSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTN  347 (549)
T ss_dssp             CCEEEECHHHHHHHHHHHHHSCCCCC-CTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEEC
T ss_pred             CeEEEeCCHHHHHHHhhhhhhcccCC-ccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcC
Confidence            9999999999999987643332  34 789999999999999999999874     45   8999999999998776654


Q ss_pred             ccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh---cCC
Q 009756          311 AWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF---ANG  387 (526)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~g  387 (526)
                      ...          ......++|.|++++ +++|+|+++|++++.|  +.|||+|+|++++.||+++++.+...|   .+|
T Consensus       348 ~~~----------~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g  414 (549)
T 3g7s_A          348 PPL----------RLDKSTTQGVPMSDI-ELKVISLEDGRELGVG--ESGEIVIRGPNIFKGYWKREKENQECWWYDEKG  414 (549)
T ss_dssp             CGG----------GGGGTTSCCEECTTC-EEEEECSSSCCEECTT--CCEEEEEESTTSCSEETTCTTGGGTSEEECTTC
T ss_pred             Ccc----------ccCcCCCccccCCCC-EEEEEeCCCCcCCCCC--CceEEEEECcchhhhhCCChhhhhhhhhccCCC
Confidence            211          113347899999999 6999997779999998  899999999999999999999999998   677


Q ss_pred             --eeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchh
Q 009756          388 --WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADEL  465 (526)
Q Consensus       388 --~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  465 (526)
                        ||+|||+|++++||.+++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|++.++....
T Consensus       415 ~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~  494 (549)
T 3g7s_A          415 RKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGK  494 (549)
T ss_dssp             CEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTS
T ss_pred             CceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCc
Confidence              999999999999999999999999999999999999999999999999999999999998899999999998763211


Q ss_pred             hhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCCc
Q 009756          466 DKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPV  519 (526)
Q Consensus       466 ~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~  519 (526)
                         ...++|+++++++|+.|++|+.+.+++ ||+|++||++|++|+++..+....
T Consensus       495 ---~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~  546 (549)
T 3g7s_A          495 ---VDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHH  546 (549)
T ss_dssp             ---CCHHHHHHHHHTTCC-----CCCCEEEECC----------------------
T ss_pred             ---CCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccccc
Confidence               156899999999999999999999888 999999999999999998876544

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=8.9e-76  Score=607.05  Aligned_cols=475  Identities=20%  Similarity=0.277  Sum_probs=389.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   +++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        89 y~eL~~~~~~~A~~-L---~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~  164 (580)
T 3etc_A           89 FKDLKYYSDKAANF-F---VKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVC  164 (580)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchH--HHHHHHHHHhhhccCCCCCC-CeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCC---CCCCCCCe
Q 009756           81 DQEFF--SLAEEALKMMEANSEGKLKT-PHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWK---PPEDEWQS  154 (526)
Q Consensus        81 ~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~  154 (526)
                      +.+..  ..+.+.....+       .. ..++.++...          ..+..++.+.+..........   ....++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  227 (580)
T 3etc_A          165 IAEDDVPEQVDEAHAECG-------DIPLKKAKVGGDV----------LEGWIDFRKELEESSPIFERPTGEVSTKNEDI  227 (580)
T ss_dssp             ESSTTHHHHHHHHHHHHC-------SCCCEEEEESSSC----------CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSE
T ss_pred             ecchhHHHHHHHHhhhCC-------CcceEEEEeCCcc----------ccccccHHHHHhhCCcccccCccccCCCCCCc
Confidence            88754  56666655554       23 4556665431          235577888777655433222   23578899


Q ss_pred             EEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeee--cccCHHH
Q 009756          155 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICL--RQVTAKA  231 (526)
Q Consensus       155 a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~--~~~~~~~  231 (526)
                      ++|+|||||||.||+|.++|.+++.........+++.+++++++..|++|..+.+. .+..+..|+++++.  ..+++..
T Consensus       228 a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~  307 (580)
T 3etc_A          228 CLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKN  307 (580)
T ss_dssp             EEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHH
T ss_pred             EEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHH
Confidence            99999999999999999999998887776666678899999999999999887765 44455566666665  4689999


Q ss_pred             HHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcccc
Q 009756          232 VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVC  310 (526)
Q Consensus       232 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~  310 (526)
                      +++.++++++|+++++|++++.|.+.. ..... ++++|.+++|||++++++.+++. .+|+++++.||+||++..++..
T Consensus       308 ~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~-l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~  385 (580)
T 3etc_A          308 MLEKASKYGVTTFCAPPTIYRFLIKED-LSHYN-FSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF  385 (580)
T ss_dssp             HHHHHHHHTCCEEEECHHHHHHHHTSC-C---C-CTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECC
T ss_pred             HHHHHHHHCCeEEEccHHHHHHHHhcc-cccCC-CccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecC
Confidence            999999999999999999999999863 33334 78999999999999999999998 4599999999999998665543


Q ss_pred             ccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcC-----ccccccccCChhhhhhhhc
Q 009756          311 AWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG-----SCVMKGYLKNPKANEEAFA  385 (526)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~-----~~~~~gy~~~~~~~~~~~~  385 (526)
                      ...           ....+++|.|++++ +++|+|++ |++++.|  +.|||+++|     +.++.||+++++.+...|.
T Consensus       386 ~~~-----------~~~~~~~G~p~~~~-~v~ivd~~-g~~~~~g--~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~  450 (580)
T 3etc_A          386 PWM-----------EPKPGSIGKPTPGY-KIELMDRD-GRLCEVG--EEGEIVINTMEGKPVGLFVHYGKDPERTEETWH  450 (580)
T ss_dssp             TTS-----------CCCTTCCBEECTTC-EEEEECTT-SCBCCTT--CCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE
T ss_pred             CCC-----------CCCCCccccCCCCC-EEEEECCC-CCCCCCC--CceEEEEecCCCCCCeeeccccCCHhHHHhhcC
Confidence            211           12337899999999 69999987 9999998  899999997     7899999999999999999


Q ss_pred             CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchh
Q 009756          386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADEL  465 (526)
Q Consensus       386 ~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  465 (526)
                      +|||+|||+|++++||+++++||.||+||++|++|+|.+||.+|.++|+|.+|+|++.+++..++.+.++|++.++....
T Consensus       451 ~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~  530 (580)
T 3etc_A          451 DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPS  530 (580)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred             CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999899999999998775432


Q ss_pred             hhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          466 DKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       466 ~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                        ....++|+++++++|+.|++|+.+.+++ ||+|++||++|++|++++.+
T Consensus       531 --~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~  579 (580)
T 3etc_A          531 --DSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS  579 (580)
T ss_dssp             --HHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred             --HHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence              2257899999999999999999999988 99999999999999998764

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=7.4e-76  Score=604.95  Aligned_cols=477  Identities=21%  Similarity=0.293  Sum_probs=408.4

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        55 y~el~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~  130 (548)
T 2d1s_A           55 YAEYLEKSCCLGKA-L---QNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFS  130 (548)
T ss_dssp             HHHHHHHHHHHHHH-H---HHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCC-cCCCCCC-----CCCCe
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE-FAWKPPE-----DEWQS  154 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~-----~~~~~  154 (526)
                      +++....+.......+       ....++.++....         ..+..++++++...... .......     .++++
T Consensus       131 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  194 (548)
T 2d1s_A          131 SKKGLDKVITVQKTVT-------TIKTIVILDSKVD---------YRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQV  194 (548)
T ss_dssp             CTTTHHHHHHHHHHST-------TCCEEEETTCSSC---------BTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCE
T ss_pred             cHHHHHHHHHHhcCCC-------CCCEEEEeCCccc---------ccccccHHHHHhcCccccCCcccccccccCCCCCE
Confidence            9988776666554433       2455665544211         01234577776654221 1110001     23899


Q ss_pred             EEEEecCCCCCCccceeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHH
Q 009756          155 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKA  231 (526)
Q Consensus       155 a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  231 (526)
                      ++++|||||||.||+|+++|+++.+.+......   +++++++++++.+|++|.+++...+...+.|+++++.+.+++..
T Consensus       195 a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~G~~~v~~~~~~~~~  274 (548)
T 2d1s_A          195 ALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEET  274 (548)
T ss_dssp             EEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHTTCEEEECCCCCHHH
T ss_pred             EEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHhcCcEEEEcCCCCHHH
Confidence            999999999999999999999998888776665   67889999999999999999876555545888888888889999


Q ss_pred             HHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccc
Q 009756          232 VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASV  309 (526)
Q Consensus       232 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~  309 (526)
                      +++.++++++|+++++|+++..|.+........ ++++|.+++||+++++++.+++. .+ ++++++.||+||++++++.
T Consensus       275 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  353 (548)
T 2d1s_A          275 FLKTLQDYKCTSVILVPTLFAILNKSELLNKYD-LSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIII  353 (548)
T ss_dssp             HHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSC-CTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred             HHHHHHHcCCcEEEecHHHHHHHHhCccccccc-ccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeee
Confidence            999999999999999999999999876544445 88999999999999999999998 45 7889999999999876654


Q ss_pred             cccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh-cCCe
Q 009756          310 CAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGW  388 (526)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~  388 (526)
                      ....           ....+++|.|++++ +++|+|+++|++++.|  +.|||+++|++++.||+++++.+...| .+||
T Consensus       354 ~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~  419 (548)
T 2d1s_A          354 TPEG-----------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGW  419 (548)
T ss_dssp             CCTT-----------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSC
T ss_pred             cCcc-----------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeEEEECCHHHhhhhcCChHHhhhcccCCcE
Confidence            2111           12337899999999 6999997779999988  799999999999999999999999999 5899


Q ss_pred             eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756          389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG  468 (526)
Q Consensus       389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  468 (526)
                      |+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..|+.++++|++.++...    
T Consensus       420 ~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~----  495 (548)
T 2d1s_A          420 LHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM----  495 (548)
T ss_dssp             EEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC----
T ss_pred             EEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCC----
Confidence            9999999999999999999999999999999999999999999999999999999998888999999998876543    


Q ss_pred             hhHHHHHHHHHhcCCCccCCc-EEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          469 KLAEDVSKFCRAKMPSYWVPK-SVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       469 ~~~~~l~~~l~~~l~~~~~p~-~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                       ..++++++++++|+.|++|+ .+.+++ ||+|++||++|++|++++.+..
T Consensus       496 -~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i  545 (548)
T 2d1s_A          496 -TEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPV  545 (548)
T ss_dssp             -CHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC
T ss_pred             -CHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhh
Confidence             46889999999999999999 888888 9999999999999999987543

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=3.2e-77  Score=614.62  Aligned_cols=482  Identities=32%  Similarity=0.490  Sum_probs=372.7

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        50 y~el~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~  125 (541)
T 1v25_A           50 YAEVYQRARRLMGG-L---RALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLF  125 (541)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+.......+       ....++.++....          .+..++++++......    ....++++++|+||
T Consensus       126 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~----~~~~~~~~a~i~~T  184 (541)
T 1v25_A          126 DPNLLPLVEAIRGELK-------TVQHFVVMDEKAP----------EGYLAYEEALGEEADP----VRVPERAACGMAYT  184 (541)
T ss_dssp             CGGGHHHHHHHGGGCS-------SCCEEEESSSCCC----------TTCEEHHHHCCSCCCC----CCCCTTSEEEEEEE
T ss_pred             ChhHHHHHHHHHhhCC-------CccEEEEecCCCC----------cccccHHHHhhccCCc----ccCCCCCcEEEEEC
Confidence            9987766655543333       3455666554321          1334566665443322    23467899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhh--HhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc-cCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNG--ALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ-VTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~  237 (526)
                      |||||.||+|+++|+++.+.....  ...+++++++++++.+|++|..++...+.+++.|+++++.+. +++..+++.++
T Consensus       185 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~  264 (541)
T 1v25_A          185 TGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFD  264 (541)
T ss_dssp             CSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHH
T ss_pred             CCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHH
Confidence            999999999999999988776653  345678899999999999999998777788888888887753 69999999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD  317 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~  317 (526)
                      ++++|+++++|+++..|.+........ ++++|.+++||+++++++.+++..+++++++.||+||++++++.+.....+.
T Consensus       265 ~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~  343 (541)
T 1v25_A          265 GEGVTFTAGVPTVWLALADYLESTGHR-LKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLE  343 (541)
T ss_dssp             HTTCCEEEECHHHHHHHHHHHHHHTCC-CSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEECCCCGGGT
T ss_pred             hcCeeEEecchHHHHHHHhhhhccCCc-chhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccceeccccccccc
Confidence            999999999999999998765433334 7899999999999999999999777999999999999987766543322211


Q ss_pred             CCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeecCceeE
Q 009756          318 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAV  396 (526)
Q Consensus       318 ~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~  396 (526)
                      ..+.........++|.|++++ +++|+|++ |++++.++++.|||+++|++++.||+++++.+...|. +|||+|||+|+
T Consensus       344 ~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~-g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~  421 (541)
T 1v25_A          344 SLSEEEKLTLKAKTGLPIPLV-RLRVADEE-GRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAV  421 (541)
T ss_dssp             TSCHHHHHHHHTSCBEECTTC-EEEEECTT-SCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEE
T ss_pred             ccCccccccccCCCCCcCCCc-EEEEECCC-CCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEE
Confidence            111111112347899999999 69999987 8898865446899999999999999999999999997 99999999999


Q ss_pred             EcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHH
Q 009756          397 KHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK  476 (526)
Q Consensus       397 ~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  476 (526)
                      +++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|+.. +...     ..+++++
T Consensus       422 ~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~-----~~~~l~~  495 (541)
T 1v25_A          422 WDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKP-----TPEELNE  495 (541)
T ss_dssp             ECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--------------------
T ss_pred             EcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCCC-----CHHHHHH
Confidence            999999999999999999999999999999999999999999999999998899999999876 2222     4577889


Q ss_pred             HHHh-cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          477 FCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       477 ~l~~-~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      ++++ +|+.|++|+.+++++ ||+|++||++|++|++++.+.
T Consensus       496 ~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  537 (541)
T 1v25_A          496 HLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY  537 (541)
T ss_dssp             -----CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred             HHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence            9988 899999999999988 999999999999999987643

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=2e-76  Score=610.33  Aligned_cols=479  Identities=22%  Similarity=0.302  Sum_probs=315.0

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        53 y~el~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~  128 (550)
T 3rix_A           53 YAEYFEMSVRLAEA-M---KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV  128 (550)
T ss_dssp             HHHHHHHHHHHHHH-H---HHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCC------cCCCCCCCCCCe
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE------FAWKPPEDEWQS  154 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~  154 (526)
                      +++....+.......+       ....++.++....         ..+..++.+++......      ..+.....++++
T Consensus       129 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  192 (550)
T 3rix_A          129 SKKGLQKILNVQKKLP-------IIQKIIIMDSKTD---------YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI  192 (550)
T ss_dssp             CGGGHHHHHHHHHHCT-------TCCEEEETTCSSC---------BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSE
T ss_pred             cHHHHHHHHHHHhhCC-------CcceEEEEcCCcc---------ccCcccHHHHhhccccccccccccCCCCCCCCCCE
Confidence            9998888877776665       4566776655421         12445666666543321      111122345789


Q ss_pred             EEEEecCCCCCCccceeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHH
Q 009756          155 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKA  231 (526)
Q Consensus       155 a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  231 (526)
                      ++|+|||||||.||+|+++|+++...+......   +++.+++++++.+|++|.+++...+.++..|+++++...+++..
T Consensus       193 a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~  272 (550)
T 3rix_A          193 ALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEEL  272 (550)
T ss_dssp             EEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHH
T ss_pred             EEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHH
Confidence            999999999999999999999998887766554   46788999999999999999988888889999999988899999


Q ss_pred             HHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCe-eecccccccCCCCccc
Q 009756          232 VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFR-ITHTYGLTELTGPASV  309 (526)
Q Consensus       232 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~-i~~~YG~tE~~~~~~~  309 (526)
                      +++.++++++|+++++|+++..|++........ ++++|.+++||+++++++.+++. .++.. +++.||+||+++.++.
T Consensus       273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  351 (550)
T 3rix_A          273 FLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYD-LSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI  351 (550)
T ss_dssp             HHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSC-CTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred             HHHHHHHcCCeEEEeCcHHHHHHHhCccccccC-cccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence            999999999999999999999999887665555 89999999999999999999998 55764 9999999999876665


Q ss_pred             cccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh-cCCe
Q 009756          310 CAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGW  388 (526)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~  388 (526)
                      +...           ....+++|.|++++ +++|+|+++|++++.|  +.|||+++|++++.||+++++.+...| .+||
T Consensus       352 ~~~~-----------~~~~~~vG~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~  417 (550)
T 3rix_A          352 TPEG-----------DDKPGAVGKVVPFF-EAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGW  417 (550)
T ss_dssp             CCTT-----------CCCTTEEEEECTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSC
T ss_pred             CCCC-----------CCCCCCcccccCCc-EEEEEeCCCCcCCCCC--CCeEEEEeCCCcchhhcCChhhhhhhcCCCCC
Confidence            4321           12237899999999 6999998889999988  899999999999999999999999999 5899


Q ss_pred             eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756          389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG  468 (526)
Q Consensus       389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  468 (526)
                      |+|||+|++++||+++++||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|+..++...    
T Consensus       418 ~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~----  493 (550)
T 3rix_A          418 LHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM----  493 (550)
T ss_dssp             EEEEEEEEECTTCCEEEC--------------------------------------------------------------
T ss_pred             eecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCC----
Confidence            9999999999999999999999999999999999999999999999999999999999989999999998876544    


Q ss_pred             hhHHHHHHHHHhcCCCccCC-cEEEecc-ccCCCCccccHHHHHHHHHhcCCc
Q 009756          469 KLAEDVSKFCRAKMPSYWVP-KSVVFAA-LPKSATGKIQKHLLRAKAKEMGPV  519 (526)
Q Consensus       469 ~~~~~l~~~l~~~l~~~~~p-~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~  519 (526)
                       ..++++++++++++.++.| ..+.+++ ||+|++||++|++|++++.+....
T Consensus       494 -~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~  545 (550)
T 3rix_A          494 -TEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKG  545 (550)
T ss_dssp             -----------------------------------------------------
T ss_pred             -CHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhccc
Confidence             5688999999999988655 4677888 999999999999999999875543

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=1.5e-74  Score=597.16  Aligned_cols=476  Identities=22%  Similarity=0.319  Sum_probs=403.4

Q ss_pred             CccchhhhhhcccccccCccCC-CCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLF-PSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~-g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.++++++|++ |   ++. |+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|
T Consensus        76 y~el~~~~~~lA~~-L---~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi  151 (570)
T 3c5e_A           76 FRELSENSQQAANV-L---SGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIV  151 (570)
T ss_dssp             HHHHHHHHHHHHHH-H---HTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEE
Confidence            78999999999999 9   888 999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~  159 (526)
                      ++++....+.+.....+       ..+.++.++....          .+..++++++........ .....++++++|+|
T Consensus       152 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~  213 (570)
T 3c5e_A          152 AGDEVIQEVDTVASECP-------SLRIKLLVSEKSC----------DGWLNFKKLLNEASTTHH-CVETGSQEASAIYF  213 (570)
T ss_dssp             EETTTHHHHHHHGGGCT-------TCCEEEEESSSCC----------TTSEEHHHHHHHSCSCCC-CCCCBTTSEEEEEE
T ss_pred             echHHHHHHHHHhhcCC-------ceeEEEEecccCc----------cccccHHHHhhccccccc-ccCCCCCCcEEEEE
Confidence            99887766655444333       3455666654211          234567777665443222 12356789999999


Q ss_pred             cCCCCCCccceeecchhHHH--HHHhhHhHhCCcCCcEEEEecccccchhhH-HHHHHHhhcceeeeec--ccCHHHHHH
Q 009756          160 TSGTTASPKGVVVSHRGAYL--MSLNGALIWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSICLR--QVTAKAVYT  234 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~~~~--~~~~~~~~~  234 (526)
                      ||||||.||+|+++|+ ++.  ..... ..+++++++++++..|++|..++. ..+.++..|+++++..  .+++..+++
T Consensus       214 TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~  291 (570)
T 3c5e_A          214 TSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILK  291 (570)
T ss_dssp             CCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHH
T ss_pred             CCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHH
Confidence            9999999999999999 544  33333 567889999999999999999886 4566677788777775  689999999


Q ss_pred             HHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-cCCeeecccccccCCCCccccccC
Q 009756          235 AIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWK  313 (526)
Q Consensus       235 ~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~  313 (526)
                      .++++++|+++++|+++..|.+.. ..... ++++|.+++||+++++++.+++.+ +++++++.||+||++.+++.....
T Consensus       292 ~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~-~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~  369 (570)
T 3c5e_A          292 TLSSYPIKSMMGAPIVYRMLLQQD-LSSYK-FPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTM  369 (570)
T ss_dssp             HHHHSCCCEEEECHHHHHHHHTSC-TTTCC-CTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS
T ss_pred             HHHHhCCeEEeccHHHHHHHHhcc-ccccc-cccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCccc
Confidence            999999999999999999999873 22233 789999999999999999999984 699999999999998554432110


Q ss_pred             CCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEc-----CccccccccCChhhhhhhhcCCe
Q 009756          314 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMR-----GSCVMKGYLKNPKANEEAFANGW  388 (526)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~-----~~~~~~gy~~~~~~~~~~~~~g~  388 (526)
                                 ....+++|.|++++ +++|+|++ |++++.|  +.|||+++     |++++.||+++++.+...|.+||
T Consensus       370 -----------~~~~~~vG~p~~~~-~v~i~d~~-g~~~~~G--~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~  434 (570)
T 3c5e_A          370 -----------KIKPGYMGTAASCY-DVQIIDDK-GNVLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDF  434 (570)
T ss_dssp             -----------CCCTTCCCEECTTC-CEEEECTT-SCBCCTT--CCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTE
T ss_pred             -----------ccCCCcccccCCCc-eEEEECCC-CCCCCCC--CCCeeEEeccCCCCchhhccccCChhHhhhhhcCCc
Confidence                       12237899999999 69999987 9999988  89999999     99999999999999999999999


Q ss_pred             eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756          389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG  468 (526)
Q Consensus       389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  468 (526)
                      |+|||+|++++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|++.++....+..
T Consensus       435 ~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~  514 (570)
T 3c5e_A          435 WLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPE  514 (570)
T ss_dssp             EEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHH
T ss_pred             cccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchH
Confidence            99999999999999999999999999999999999999999999999999999999988889999999987654222223


Q ss_pred             hhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          469 KLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       469 ~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                      ...++|+++++++|+.|++|+.+.+++ ||+|++||++|++|++++.+.+
T Consensus       515 ~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~s  564 (570)
T 3c5e_A          515 QLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMS  564 (570)
T ss_dssp             HHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhhh
Confidence            367899999999999999999999988 9999999999999999886543

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=3.7e-75  Score=598.96  Aligned_cols=469  Identities=23%  Similarity=0.329  Sum_probs=397.3

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        53 y~eL~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~  128 (539)
T 1mdb_A           53 YRELDTRADRLAAG-F---QKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYII  128 (539)
T ss_dssp             HHHHHHHHHHHHHH-H---HHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEe
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchH-----HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeE
Q 009756           81 DQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI  155 (526)
Q Consensus        81 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a  155 (526)
                      +++..     ..+.......+       ..+.++..++..               .+.++....... .......+++++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---------------~~~~~~~~~~~~-~~~~~~~~~d~a  185 (539)
T 1mdb_A          129 PDAYSGFDYRSLARQVQSKLP-------TLKNIIVAGEAE---------------EFLPLEDLHTEP-VKLPEVKSSDVA  185 (539)
T ss_dssp             ESEETTEEHHHHHHHHHHHCT-------TCCCEEEESCCT---------------TSEEGGGCCCCC-CCCCCCCTTSEE
T ss_pred             ccccccccHHHHHHHHHhcCC-------CccEEEEcCCcc---------------chhhhhhccccc-cccCCCCcCceE
Confidence            87532     23333333333       344555444321               111122111111 111235678999


Q ss_pred             EEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhH--HHHHHHhhcceeeeecccCHHHHH
Q 009756          156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS--YTWSLAALCGTSICLRQVTAKAVY  233 (526)
Q Consensus       156 ~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~  233 (526)
                      +++|||||||.||+|+++|+++.+.+......+++++++++++.+|++|.+++.  ..+.++..|+++++.+.+++..++
T Consensus       186 ~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~  265 (539)
T 1mdb_A          186 FLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAF  265 (539)
T ss_dssp             EEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHH
T ss_pred             EEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHH
Confidence            999999999999999999999999988888888999999999999999999886  467778889988888888999999


Q ss_pred             HHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcccccc
Q 009756          234 TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAW  312 (526)
Q Consensus       234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~  312 (526)
                      +.++++++|+++++|+++..|++........ ++++|.+++||+++++++.+++. .+++++++.||+||++..++..  
T Consensus       266 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~--  342 (539)
T 1mdb_A          266 PLIEREKVTITALVPPLAMVWMDAASSRRDD-LSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRL--  342 (539)
T ss_dssp             HHHHHHTCSEEEECHHHHHHHHHHHHHCCCC-CTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCT--
T ss_pred             HHHHHcCCeEEEccHHHHHHHHhCccccCCC-ccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCC--
Confidence            9999999999999999999998765433444 89999999999999999999998 5699999999999964322211  


Q ss_pred             CCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeec
Q 009756          313 KPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHS  391 (526)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~t  391 (526)
                      .        ........++|.|+++..+++|+|++ +++++.|  +.|||+++|++++.||+++++.+...|. +|||+|
T Consensus       343 ~--------~~~~~~~~~~G~p~~~~~~~~i~d~~-~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T  411 (539)
T 1mdb_A          343 D--------DPEEIIVNTQGKPMSPYDESRVWDDH-DRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT  411 (539)
T ss_dssp             T--------SCHHHHHHCCCEESSTTCEEEEECTT-SCBCCTT--CCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEE
T ss_pred             C--------CcHHhcCCCCCcccCCCceEEEECCC-CCCCcCC--CcceEEeeCcccchhhcCChhhhhhhccCCCCeec
Confidence            0        01112346899999876469999986 9999988  8999999999999999999999999994 899999


Q ss_pred             CceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhH
Q 009756          392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLA  471 (526)
Q Consensus       392 GD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  471 (526)
                      ||+|++++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|+..+. ..     ..
T Consensus       412 GDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~-~~-----~~  485 (539)
T 1mdb_A          412 GDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-AP-----KA  485 (539)
T ss_dssp             EEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-CC-----CH
T ss_pred             CceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCC-CC-----CH
Confidence            9999999999999999999999999999999999999999999999999999998888999999998743 22     45


Q ss_pred             HHHHHHHHhc-CCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          472 EDVSKFCRAK-MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       472 ~~l~~~l~~~-l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      ++++++++++ |+.|++|+.+.+++ ||+|++||++|++|++++.+.
T Consensus       486 ~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  532 (539)
T 1mdb_A          486 AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK  532 (539)
T ss_dssp             HHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHH
Confidence            7899999997 99999999999988 999999999999999998764

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=9.1e-74  Score=600.16  Aligned_cols=486  Identities=21%  Similarity=0.277  Sum_probs=405.1

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   +++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus       110 Y~eL~~~v~~lA~~-L---~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~  185 (652)
T 1pg4_A          110 YRELHRDVCRFANT-L---LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVIT  185 (652)
T ss_dssp             HHHHHHHHHHHHHH-H---HHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchH---------HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCC
Q 009756           81 DQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDE  151 (526)
Q Consensus        81 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  151 (526)
                      ++...         ..+.+.....+     ......++.++.......    ........|+++++....... .....+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~vi~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~  255 (652)
T 1pg4_A          186 ADEGVRAGRSIPLKKNVDDALKNPN-----VTSVEHVIVLKRTGSDID----WQEGRDLWWRDLIEKASPEHQ-PEAMNA  255 (652)
T ss_dssp             ESEEEETTEEEESHHHHHHHHTSTT-----CCSCCEEEEECSSCCCCC----CCBTTEEEHHHHHTTSCSCCC-CCCEET
T ss_pred             cCccccCCcccchHHHHHHHHhcCC-----cCCCCEEEEEeCCCCccc----ccCCCceeHHHHHhhcCCCCC-ccccCC
Confidence            87642         23333332211     002456777764321100    001123567777765433221 123467


Q ss_pred             CCeEEEEecCCCCCCccceeecchhHHHHHH-hhHhHhCCcCCcEEEEecccccchhh-HHHHHHHhhcceeeeecc---
Q 009756          152 WQSIALGYTSGTTASPKGVVVSHRGAYLMSL-NGALIWGMNEGAVFLWTLPMFHGNGW-SYTWSLAALCGTSICLRQ---  226 (526)
Q Consensus       152 ~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~g~~~~~~~~---  226 (526)
                      +++++|+|||||||.||||+++|.+++.... .....++++++|++++..|++|..++ ...+.++..|+++++.+.   
T Consensus       256 ~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~  335 (652)
T 1pg4_A          256 EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN  335 (652)
T ss_dssp             TSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTT
T ss_pred             CCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCC
Confidence            8999999999999999999999999877664 34556789999999999999999998 456677788888888754   


Q ss_pred             -cCHHHHHHHHHhcCceeeeccHHHHHHHHccCC--CCCCCCCCceeeEeccCCCCCHHHHHHHh-hcC---Ceeecccc
Q 009756          227 -VTAKAVYTAIATHGVTHFCAAPVVLNAIANASP--EDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKG---FRITHTYG  299 (526)
Q Consensus       227 -~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~---~~i~~~YG  299 (526)
                       .++..+++.++++++|+++++|++++.|.+...  ....+ +++||.+++|||++++++.+++. .++   +++++.||
T Consensus       336 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG  414 (652)
T 1pg4_A          336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD-RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW  414 (652)
T ss_dssp             SSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCC-CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBC
T ss_pred             CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCC-cCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEcccc
Confidence             588999999999999999999999999998754  22334 89999999999999999999998 456   89999999


Q ss_pred             cccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcC--ccccccccCCh
Q 009756          300 LTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG--SCVMKGYLKNP  377 (526)
Q Consensus       300 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~--~~~~~gy~~~~  377 (526)
                      +||+++.++......         .....+++|.|++++ +++|+|++ |++++.|  +.|||+++|  |+++.||++++
T Consensus       415 ~TE~~~~~~~~~~~~---------~~~~~~s~G~p~~g~-~v~i~d~~-g~~v~~g--~~GEl~i~g~~p~~~~gY~~~~  481 (652)
T 1pg4_A          415 QTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDNE-GHPQEGA--TEGNLVITDSWPGQARTLFGDH  481 (652)
T ss_dssp             CGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECTT-CCBCCSS--EEEEEEECSCCTTCCCEETTCH
T ss_pred             CcccccceecCCCCC---------cCccCCccccCcCCC-eEEEECCC-CCCcCCC--ceEEEEEccCCCchhhhhcCCH
Confidence            999987665432110         112347899999999 69999987 9999987  899999999  78999999999


Q ss_pred             hhhhhhh---cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEE
Q 009756          378 KANEEAF---ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA  454 (526)
Q Consensus       378 ~~~~~~~---~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~  454 (526)
                      +.+...|   .+|||+|||+|++++||+++++||.||+||++|++|+|.+||.+|.+||+|.+|+|++.+++..|+.+++
T Consensus       482 e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a  561 (652)
T 1pg4_A          482 ERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA  561 (652)
T ss_dssp             HHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEE
T ss_pred             HHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEE
Confidence            9887776   3789999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             EEEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          455 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       455 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      +|++.++....  .+..++|+++++++|+.|++|+.+++++ ||+|++||++|+.|++++.+.
T Consensus       562 ~Vv~~~~~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~  622 (652)
T 1pg4_A          562 YVTLNHGEEPS--PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD  622 (652)
T ss_dssp             EEEECTTCCCC--HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred             EEEECCCCCCC--HHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence            99998765321  1256899999999999999999999998 999999999999999999865

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=9.4e-74  Score=584.35  Aligned_cols=454  Identities=25%  Similarity=0.367  Sum_probs=383.5

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        32 y~el~~~~~~~A~~-L---~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~  107 (504)
T 1t5h_X           32 HAELRARVEAVAAR-L---HADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI  107 (504)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             --ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCC----CCcCCCCCCCCCCe
Q 009756           81 --DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGD----PEFAWKPPEDEWQS  154 (526)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~  154 (526)
                        +++....+.   ....       . ..++.++                     +++....    ..........++++
T Consensus       108 ~~~~~~~~~~~---~~~~-------~-~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~  155 (504)
T 1t5h_X          108 AVGRQVADAIF---QSGS-------G-ARIIFLG---------------------DLVRDGEPYSYGPPIEDPQREPAQP  155 (504)
T ss_dssp             CC--CHHHHHH---HHCC-------C-CEEEEGG---------------------GTEETTEECCCSCCCCCCCCCTTSE
T ss_pred             ecchhhhhhhh---hccc-------c-ceeEEec---------------------chhhcCcccccCCccCCCCCCCCCe
Confidence              665433321   1111       1 1122221                     1111110    00011123567899


Q ss_pred             EEEEecCCCCCCccceeecchhHHHHHHhhHhHhCC--cCCcEEEEecccccchhhH-HHHHHHhhcceeeeecccCHHH
Q 009756          155 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGM--NEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSICLRQVTAKA  231 (526)
Q Consensus       155 a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~  231 (526)
                      ++|+|||||||.||+|.++|+++.+.+......+++  .+++++++.+|++|..++. ..+.++..|+++++.+.+++..
T Consensus       156 a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~  235 (504)
T 1t5h_X          156 AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVD  235 (504)
T ss_dssp             EEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHH
T ss_pred             EEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHH
Confidence            999999999999999999999999888887777777  8899999999999999984 5667777888888888899999


Q ss_pred             HHHHHHhcCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcc
Q 009756          232 VYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPAS  308 (526)
Q Consensus       232 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~  308 (526)
                      +++.++++++|+++++|+++..|.+....  .... ++++|.+++||+++++++.+++. .+++++++.||+||++ .+.
T Consensus       236 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~  313 (504)
T 1t5h_X          236 ALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK-LDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSL  313 (504)
T ss_dssp             HHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCC-CTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEE
T ss_pred             HHHHHHHhCCeEEEeChHHHHHHHhhhcccccccc-CccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-ccc
Confidence            99999999999999999999999886522  2333 78999999999999999999998 4589999999999983 222


Q ss_pred             ccccCCCCCCCCcccccccccccceeeeecCCceeecCCCC---CccCCCCCceEEEEEc-CccccccccCChhhhhhhh
Q 009756          309 VCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTN---QPVPADGKTIGEIVMR-GSCVMKGYLKNPKANEEAF  384 (526)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g---~~~~~~~~~~Gel~v~-~~~~~~gy~~~~~~~~~~~  384 (526)
                      . ..            ....+++|.|.+++ +++++|.+ +   ++++.|  +.|||+++ |+.++.||+++++.+...|
T Consensus       314 ~-~~------------~~~~~~~g~p~~~~-~~~i~~~~-~~~~~~~~~g--~~GEl~v~gg~~~~~GY~~~~~~t~~~f  376 (504)
T 1t5h_X          314 Y-MR------------QPKTGTEMAPGFFS-EVRIVRIG-GGVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAEKL  376 (504)
T ss_dssp             E-EE------------SCSSSSEEBCCTTC-CEEEECTT-SCTTCBCCTT--CCEEEEEECCTTSCCCBTTCHHHHHHHE
T ss_pred             c-cc------------CCCCCccccCCCCC-ceeEEecc-CCCCCcCCCC--CcceEEEeCCceeeceecCCchhhhhhh
Confidence            1 11            11236789999999 69999987 5   888887  79999999 9999999999999999999


Q ss_pred             cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCch
Q 009756          385 ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE  464 (526)
Q Consensus       385 ~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  464 (526)
                      .+|||+|||+|++++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|++.++...
T Consensus       377 ~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~  456 (504)
T 1t5h_X          377 QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETL  456 (504)
T ss_dssp             ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCC
T ss_pred             cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999889999999998876543


Q ss_pred             hhhhhhHHHHHHHHHh-cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHH
Q 009756          465 LDKGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK  514 (526)
Q Consensus       465 ~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~  514 (526)
                           ..+++++++++ +|+.|++|+.+.+++ ||+|++||++|++|++++.
T Consensus       457 -----~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          457 -----SADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             -----CHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred             -----CHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence                 45789999998 999999999999998 9999999999999999864

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.3e-73  Score=599.14  Aligned_cols=489  Identities=21%  Similarity=0.276  Sum_probs=401.0

Q ss_pred             CccchhhhhhcccccccCcc-CCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPL-LFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~-~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.++++++|++ |   + ++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|
T Consensus       116 Y~eL~~~v~~lA~~-L---~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li  191 (663)
T 1ry2_A          116 YKELLEEVCQVAQV-L---TYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVI  191 (663)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEE
Confidence            78999999999999 9   9 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchH---------HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCC
Q 009756           80 VDQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPED  150 (526)
Q Consensus        80 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  150 (526)
                      +++...         ..+.+.....+       ..+.++.++.......  . ........|.+++........ ..+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~vi~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~-~~~~~  260 (663)
T 1ry2_A          192 TTDESNRGGKVIETKRIVDDALRETP-------GVRHVLVYRKTNNPSV--A-FHAPRDLDWATEKKKYKTYYP-CTPVD  260 (663)
T ss_dssp             EESBCCBTTBCCBHHHHHHHHTTSCT-------TCCEEEEECSSCCSSC--C-CCSSSEEEHHHHHTTSCSCCC-CCCEE
T ss_pred             EccccccCCcccchHHHHHHHHHhCC-------CCceEEEEecCCCCcc--c-cCCCccccHHHHHhhcCCCCC-ccccC
Confidence            987642         22333322222       3566777764321000  0 001223567777764432221 12356


Q ss_pred             CCCeEEEEecCCCCCCccceeecchhHHHHHHh-hHhHhCCcCCcEEEEecccccchhh-HHHHHHHhhcceeeeecc--
Q 009756          151 EWQSIALGYTSGTTASPKGVVVSHRGAYLMSLN-GALIWGMNEGAVFLWTLPMFHGNGW-SYTWSLAALCGTSICLRQ--  226 (526)
Q Consensus       151 ~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~g~~~~~~~~--  226 (526)
                      ++++++|+|||||||.||||+++|.+++..... ....++++++|++++..|++|..+. ...+.+++.|+++++++.  
T Consensus       261 ~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~  340 (663)
T 1ry2_A          261 SEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTP  340 (663)
T ss_dssp             TTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCT
T ss_pred             CCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCC
Confidence            789999999999999999999999998766643 4456789999999999999999988 445677788888888753  


Q ss_pred             --cCHHHHHHHHHhcCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHh-hcC---Ceeeccc
Q 009756          227 --VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMS-QKG---FRITHTY  298 (526)
Q Consensus       227 --~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~---~~i~~~Y  298 (526)
                        .++..+++.|+++++|+++++|++++.|.+....  ...+ +++||.+++|||++++++.+++. .++   +++++.|
T Consensus       341 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~-l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~Y  419 (663)
T 1ry2_A          341 AYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHS-LKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTY  419 (663)
T ss_dssp             TSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCC-CTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECB
T ss_pred             CCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCC-cCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeE
Confidence              5789999999999999999999999999887542  2334 89999999999999999999998 456   8999999


Q ss_pred             ccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCC-CCCceEEEEEcC--ccccccccC
Q 009756          299 GLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPA-DGKTIGEIVMRG--SCVMKGYLK  375 (526)
Q Consensus       299 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~-~~~~~Gel~v~~--~~~~~gy~~  375 (526)
                      |+||+++.++......        ......+++|.|++++ +++|+|+++|++++. |  +.|||+++|  |+++.||++
T Consensus       420 G~TE~~~~~~~~~~~~--------~~~~~~gs~G~p~~g~-~v~i~d~~~g~~v~~~g--~~Gel~i~g~~p~~~~gy~~  488 (663)
T 1ry2_A          420 WQTESGSHLVTPLAGG--------VTPMKPGSASFPFFGI-DAVVLDPNTGEELNTSH--AEGVLAVKAAWPSFARTIWK  488 (663)
T ss_dssp             CCTTTCSCSEECCTTT--------CCCCCTTCCCEECTTC-CEEEECSSSTTCEECSS--CEEEEEESSCCTTSCCEETT
T ss_pred             CCccccCeeeccCCCC--------CcccCCCccccCcCCC-eEEEEcCCCCCcCCCCC--cceEEEEecCCCchhccccc
Confidence            9999987665532100        0112347899999999 699999956999987 5  799999999  589999999


Q ss_pred             Chhhhhhhhc---CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCcee
Q 009756          376 NPKANEEAFA---NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP  452 (526)
Q Consensus       376 ~~~~~~~~~~---~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~  452 (526)
                      +++.+...|.   +|||+|||+|++++||+++++||.||+||++|++|+|.+||.+|.++|.|.+++|++.+++..|+.+
T Consensus       489 ~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~  568 (663)
T 1ry2_A          489 NHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAV  568 (663)
T ss_dssp             CHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCC
T ss_pred             ChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEE
Confidence            9998888773   7899999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             EEEEEecCCCc-----hhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          453 CAFVTLKPEAD-----ELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       453 ~~~v~~~~~~~-----~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      +++|+++++..     .++..+..++|+++++++|+.|++|+.+++++ ||+|++||++|+.|++++.+.
T Consensus       569 ~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~  638 (663)
T 1ry2_A          569 AAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE  638 (663)
T ss_dssp             EEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred             EEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence            99999987643     11001257899999999999999999999998 999999999999999988764

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=3.7e-75  Score=599.65  Aligned_cols=473  Identities=21%  Similarity=0.297  Sum_probs=311.3

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        58 y~eL~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~  133 (544)
T 3o83_A           58 YIELDRLSTNLATR-L---AEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIG  133 (544)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchH-----HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeE
Q 009756           81 DQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI  155 (526)
Q Consensus        81 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a  155 (526)
                      ++...     ...........       ....++.++....            ...+.++...............+++++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~d~a  194 (544)
T 3o83_A          134 SRQHEVFSNNQFIDSLHDVNL-------SPEIILMLNHQAT------------DFGLLDWIETPAETFVDFSSTPADEVA  194 (544)
T ss_dssp             ETTSGGGSSSHHHHHHHHTTC-------CCSEEEEETCCTT------------SEEHHHHHHSCCSSCCCCCCCCTTSEE
T ss_pred             ccccccccHHHHHHHHhhccc-------CcceEEEecCCcc------------ccchhhhhhcccccccccccCCccceE
Confidence            87653     33333333322       3455555544311            123444444433322222345788999


Q ss_pred             EEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhH--HHHHHHhhcceeeeecccCHHHHH
Q 009756          156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS--YTWSLAALCGTSICLRQVTAKAVY  233 (526)
Q Consensus       156 ~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~  233 (526)
                      +|+|||||||.||+|+++|+++.+.+......+++.+++++++.+|++|.+++.  ..+.++..|+++++.+.+++..++
T Consensus       195 ~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~  274 (544)
T 3o83_A          195 FFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCF  274 (544)
T ss_dssp             EEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHH
T ss_pred             EEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHH
Confidence            999999999999999999999999999998899999999999999999998876  366777788888888889999999


Q ss_pred             HHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcccccc
Q 009756          234 TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAW  312 (526)
Q Consensus       234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~  312 (526)
                      +.++++++|+++++|+++..|++........ ++++|.+++||+++++++.+++. .+++++++.||+||++..++... 
T Consensus       275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-  352 (544)
T 3o83_A          275 SIIQRHQVNMASLVPSAVIMWLEKAAQYKDQ-IQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLD-  352 (544)
T ss_dssp             HHHHHHTCCEEEECHHHHHHHHHHHTTTHHH-HTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTT-
T ss_pred             HHHHHHCCCEEEechHHHHHHHhchhhcccc-CCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCC-
Confidence            9999999999999999999999886655555 88999999999999999999998 45999999999999874333221 


Q ss_pred             CCCCCCCCcccccccccccceee-eecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh-cCCeee
Q 009756          313 KPEWDSLPFETQARLNARQGVRT-ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFH  390 (526)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~  390 (526)
                               ........++|.|+ ++. +++|+|++ +++++.|  +.|||+++|++++.||+++++.+...| .+|||+
T Consensus       353 ---------~~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~  419 (544)
T 3o83_A          353 ---------DSDEQIFTTQGRPISSDD-EIKIVDEQ-YREVPEG--EIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYY  419 (544)
T ss_dssp             ---------SCHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEE
T ss_pred             ---------CchhhccCCCceecCCCc-EEEEECCC-CCCCCCC--CeeEEEEecCCcchhhcCChhhhhhhCCCCCCeE
Confidence                     11122346889996 666 69999966 9999998  899999999999999999999999999 589999


Q ss_pred             cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhh
Q 009756          391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL  470 (526)
Q Consensus       391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  470 (526)
                      |||+|++++||+++++||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..|+.++++++..+.. .     .
T Consensus       420 TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~-~-----~  493 (544)
T 3o83_A          420 SGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPE-L-----K  493 (544)
T ss_dssp             EEEEEEECTTSCEEEEEEEC------------------------------------------------------------
T ss_pred             cCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCC-C-----C
Confidence            999999999999999999999999999999999999999999999999999999999899999999877532 1     4


Q ss_pred             HHHHHHHHHh-cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          471 AEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       471 ~~~l~~~l~~-~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                      ..++++++++ +|+.|++|+.+.+++ ||+|++||++|++|++++.+..
T Consensus       494 ~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  542 (544)
T 3o83_A          494 AVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTST  542 (544)
T ss_dssp             -------------------------------------------------
T ss_pred             HHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhcc
Confidence            5778888888 799999999999988 9999999999999999987643

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=2.4e-75  Score=597.24  Aligned_cols=469  Identities=26%  Similarity=0.420  Sum_probs=307.9

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        34 y~eL~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~  109 (509)
T 3ivr_A           34 HRDYLARAERLASG-L---LRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVA  109 (509)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +.+....+........       ....++.+++..              ..+.++...............++++++|+||
T Consensus       110 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~T  168 (509)
T 3ivr_A          110 GTDYRDIVAGVLPSLG-------GVKKAYAIGDGS--------------GPFAPFKDLASDTPFSAPEFGAADGFVIIHT  168 (509)
T ss_dssp             CSTTHHHHHHHGGGCS-------SCCEEEESSCCC--------------SSCEEGGGTCCCSCCCCCCCCTTSEEEEEEE
T ss_pred             CcchhhhHHhhhcccC-------CceEEEEcCCCC--------------cChhhHhhccCCCCCCcCCCCccccEEEEeC
Confidence            9987776544443333       455666665421              1122222211111122234578899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG  240 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  240 (526)
                      |||||.||+|+++|+++.+........+++++++++++.+|++|..++...+..++.+++.++...+++..+++.+++++
T Consensus       169 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~  248 (509)
T 3ivr_A          169 AAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHK  248 (509)
T ss_dssp             EC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHC
Confidence            99999999999999999999999888999999999999999999999988888888888888888889999999999999


Q ss_pred             ceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccccCCCCCC
Q 009756          241 VTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCAWKPEWDS  318 (526)
Q Consensus       241 ~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~  318 (526)
                      +|+++++|+++..|++..  .... ++++|.++.+|++   +..+.+. .+ ++++++.||+||++++++.+...     
T Consensus       249 ~t~~~~~p~~~~~l~~~~--~~~~-l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-----  317 (509)
T 3ivr_A          249 VTVMAEFAPMLGNILDQA--APAQ-LASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR-----  317 (509)
T ss_dssp             CCEEEEETTHHHHHHHHC--CGGG-GTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-----
T ss_pred             CcEEEecHHHHHHHHhcc--cccc-hhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc-----
Confidence            999999999999999886  2233 7899999999987   7777776 44 89999999999998766654321     


Q ss_pred             CCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEc
Q 009756          319 LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKH  398 (526)
Q Consensus       319 ~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~  398 (526)
                             .....+|.|++++ +++|+|++ +++++.|  +.|||+++|++++.||+++++.+...|.+|||+|||+|+++
T Consensus       318 -------~~~~~~G~p~~~~-~~~i~d~~-~~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~  386 (509)
T 3ivr_A          318 -------DRPKSAGRPLFWR-TVAVVDAE-DRPLPPG--EVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFD  386 (509)
T ss_dssp             -------GSTTSCCEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEEC
T ss_pred             -------cCCCcccccCCCc-EEEEECCC-CCCCCCC--CceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEEC
Confidence                   1124589999999 69999988 9999998  89999999999999999999999999999999999999999


Q ss_pred             CCceEEEeccc--cceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHH
Q 009756          399 PDNYIEIKDRL--KDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK  476 (526)
Q Consensus       399 ~~g~~~~~GR~--~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  476 (526)
                      +||++++.||.  +|+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++++..++...     ..+++++
T Consensus       387 ~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~-----~~~~l~~  461 (509)
T 3ivr_A          387 ADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESI-----AADALAE  461 (509)
T ss_dssp             TTSCEEEEEEC---------------------------------------------------------------------
T ss_pred             CCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCC-----CHHHHHH
Confidence            99999999999  9999999999999999999999999999999999999889999999998876544     5688999


Q ss_pred             HHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCCccc
Q 009756          477 FCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPVKM  521 (526)
Q Consensus       477 ~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~~~  521 (526)
                      +++++|+.|++|+.+.+++ ||+|++||++|++|++++.+....+.
T Consensus       462 ~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~~  507 (509)
T 3ivr_A          462 FVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHHH  507 (509)
T ss_dssp             ----------------------------------------------
T ss_pred             HHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhcccccC
Confidence            9999999999999999888 99999999999999999988766543

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.2e-72  Score=580.02  Aligned_cols=472  Identities=25%  Similarity=0.318  Sum_probs=385.1

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        51 y~el~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~  126 (529)
T 2v7b_A           51 YGELEERARRFASA-L---RTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIA  126 (529)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEe
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCC-CeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKT-PHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~  159 (526)
                      +++....+.+.....+       .. ..++.++....        .......+++++....... ......++|+++++|
T Consensus       127 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~  190 (529)
T 2v7b_A          127 SGALVQNVTQALESAE-------HDGCQLIVSQPRES--------EPRLAPLFEELIDAAAPAA-KAAATGCDDIAFWLY  190 (529)
T ss_dssp             EGGGHHHHHHHHHCC----------CCEEEEECC--------------CCCBHHHHHHTSCCCS-SCCCCCTTSEEEEEE
T ss_pred             chhhhhHHHHHHhhcc-------ccCceEEEeccccc--------ccccccchhhhhccCCCcc-cccCCCCCCeEEEEE
Confidence            9987766655543222       22 44444443211        0011235666665333221 122357789999999


Q ss_pred             cCCCCCCccceeecchhH-HHHHHhhHhHhCCcCCcEEEEecccccchhhHHH-HHHHhhcceeeee-cccCHHHHHHHH
Q 009756          160 TSGTTASPKGVVVSHRGA-YLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT-WSLAALCGTSICL-RQVTAKAVYTAI  236 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~i  236 (526)
                      ||||||.||+|+++|+++ .+........+++.+++++++..|++|..++... +.++..|+++++. ..+++..+++.+
T Consensus       191 TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i  270 (529)
T 2v7b_A          191 SSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARL  270 (529)
T ss_dssp             C-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHH
T ss_pred             CCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHH
Confidence            999999999999999998 5655555556788899999999999999998654 4566677777766 567999999999


Q ss_pred             HhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-cCCeeecccccccCCCCccccccCCC
Q 009756          237 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       237 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      +++++|+++++|+++..+.......... ..++|.+++|||++++++.+++.+ +++++++.||+||++++++.+.... 
T Consensus       271 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-  348 (529)
T 2v7b_A          271 VEHRPTVFYGVPTLYANMLVSPNLPARA-DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-  348 (529)
T ss_dssp             HHSCCSEEEECHHHHHHHHTCTTCCCGG-GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-
T ss_pred             HHhCCEEEEecHHHHHHHHhCccccccc-CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-
Confidence            9999999999999999999876544332 248999999999999999999984 6999999999999976554432110 


Q ss_pred             CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCcee
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLA  395 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~  395 (526)
                                ....++|.|++++ +++|+|++ |++++.|  +.|||+++|++++.||+++++.+...|.+|||+|||+|
T Consensus       349 ----------~~~~~~G~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~  414 (529)
T 2v7b_A          349 ----------VEYGTTGRPVPGY-EIELRDEA-GHAVPDG--EVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKY  414 (529)
T ss_dssp             ----------CCTTSCCEECTTC-EEEEECTT-SCBCCTT--SCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEE
T ss_pred             ----------CccCCcccCCCCC-EEEEECCC-CCCCCCC--CccEEEEecCCcccccCCChHHHHHhhhcCCcccCceE
Confidence                      2236899999999 69999976 9999988  89999999999999999999999999999999999999


Q ss_pred             EEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHH
Q 009756          396 VKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVS  475 (526)
Q Consensus       396 ~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~  475 (526)
                      ++++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++. ++..++.++++++..++....  ....++++
T Consensus       415 ~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~--~~~~~~l~  491 (529)
T 2v7b_A          415 CRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPS--EILAEELK  491 (529)
T ss_dssp             EECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCC--HHHHHHHH
T ss_pred             EECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcc--hhHHHHHH
Confidence            999999999999999999999999999999999999999999999999 555678899999987664211  11446899


Q ss_pred             HHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHH
Q 009756          476 KFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA  511 (526)
Q Consensus       476 ~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~  511 (526)
                      ++++++|+.|++|+.+.+++ ||+|++||++|++|++
T Consensus       492 ~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          492 AFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE  528 (529)
T ss_dssp             HHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred             HHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence            99999999999999999988 9999999999999986

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=5.6e-73  Score=580.09  Aligned_cols=470  Identities=18%  Similarity=0.203  Sum_probs=393.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        29 y~el~~~~~~lA~~-L---~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~  104 (512)
T 3fce_A           29 YKQLKEDSDALAHW-I---SSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLS  104 (512)
T ss_dssp             HHHHHHHHHHHHHH-H---HHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEe
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCC-eEEEEccCCCCchhhhhhhhcCcccHHHHHhhCC-CCcCCCCCCCCCCeEEEE
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTP-HLIVIGDESCDSKQLEYALARGAIEYEKFLETGD-PEFAWKPPEDEWQSIALG  158 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~i~  158 (526)
                      +.....         .       ... .++..                  ..+.++..... ..........++++++|+
T Consensus       105 ~~~~~~---------~-------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~  150 (512)
T 3fce_A          105 ATAVTV---------T-------DLPVRIVSE------------------DNLKDIFFTHKGNTPNPEHAVKGDENFYII  150 (512)
T ss_dssp             SSCCCS---------S-------CCSSEEEET------------------HHHHHHHHHTTTCCCCGGGSCCTTSEEEEE
T ss_pred             cCcccc---------c-------ccccceech------------------hhhhhhcccccccCCCccccCCCCCeEEEE
Confidence            754311         0       011 11111                  11222222111 111112235678999999


Q ss_pred             ecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc---cCHHHHHHH
Q 009756          159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTA  235 (526)
Q Consensus       159 ~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~  235 (526)
                      |||||||.||+|+++|.++.+.+......+++.+++++++.+|++|..++...+.++..|+++++.+.   .++..+++.
T Consensus       151 ~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~  230 (512)
T 3fce_A          151 YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFAS  230 (512)
T ss_dssp             EECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHH
T ss_pred             ECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHH
Confidence            99999999999999999999999988888999999999999999999998888888888998888865   689999999


Q ss_pred             HHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccccC
Q 009756          236 IATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCAWK  313 (526)
Q Consensus       236 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~  313 (526)
                      ++++++|+++++|+++..++......... ++++|.+++||+++++++.+++. .+ ++++++.||+||+++.++.....
T Consensus       231 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~  309 (512)
T 3fce_A          231 LEQSDIQVWTSTPSFAEMCLMEASFSESM-LPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVT  309 (512)
T ss_dssp             HHHHCCCEEEECHHHHHHHTTSTTCSTTT-STTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECC
T ss_pred             HHHcCCcEEEecHHHHHHHHhhccccchh-CccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEec
Confidence            99999999999999999998887666555 89999999999999999999998 45 89999999999998776654322


Q ss_pred             CCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc----CCee
Q 009756          314 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA----NGWF  389 (526)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~g~~  389 (526)
                      ..      ........++|.|.+++ +++|+|++ |++++.|  +.|||+++|++++.||+++++.+...|.    +|||
T Consensus       310 ~~------~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~  379 (512)
T 3fce_A          310 EE------VLDQYKSLPVGYCKSDC-RLLIMKED-GTIAPDG--EKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAY  379 (512)
T ss_dssp             HH------HHHHCSSCCCEEECTTC-EEEEECSS-SCBCCTT--SCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred             cc------cccccCCCccccccCCc-EEEEECCC-CCCCCCC--CeEEEEEeccccChhhcCCchhhhhccccCCCCEEE
Confidence            10      11112346789999999 69999976 9999988  7999999999999999999999999984    5699


Q ss_pred             ecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhh
Q 009756          390 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGK  469 (526)
Q Consensus       390 ~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  469 (526)
                      +|||+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.++...++.++++++..+.... +...
T Consensus       380 ~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~-~~~~  457 (512)
T 3fce_A          380 KTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFE-KEFK  457 (512)
T ss_dssp             EEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCS-SHHH
T ss_pred             eCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCcccc-chhh
Confidence            99999999 799999999999999999999999999999999999999999999988888899999998765432 1223


Q ss_pred             hHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCCccc
Q 009756          470 LAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPVKM  521 (526)
Q Consensus       470 ~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~~~  521 (526)
                      ..++++++++++|+.|++|+.+.+++ ||+|++||++|++|++.+.+...++.
T Consensus       458 ~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~~  510 (512)
T 3fce_A          458 LTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHHH  510 (512)
T ss_dssp             HHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC------
T ss_pred             hHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccccc
Confidence            56789999999999999999999988 99999999999999999998876543

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=2.5e-72  Score=586.93  Aligned_cols=469  Identities=23%  Similarity=0.332  Sum_probs=400.3

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        53 Y~eL~~~a~~lA~~-L---~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~  128 (617)
T 3rg2_A           53 YRELNQAADNLACS-L---RRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIA  128 (617)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEe
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchH-----HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeE
Q 009756           81 DQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI  155 (526)
Q Consensus        81 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a  155 (526)
                      +....     ...........       ....+..++....             ..+.+.......... ..+..+++++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~~~~~a  187 (617)
T 3rg2_A          129 DRQHALFSGDDFLNTFVTEHS-------SIRVVQLLNDSGE-------------HNLQDAINHPAEDFT-ATPSPADEVA  187 (617)
T ss_dssp             ETTSGGGSSSHHHHHHHHHST-------TCCEEEEETCCST-------------TBHHHHHHSCCSSCC-CCCCCTTSEE
T ss_pred             cccccccccHHHHHHHhhcCC-------ccceeeecccccc-------------cchhhhhcccccccC-CCCCCCCCeE
Confidence            87654     33333333333       3445555443321             234444443332222 2335678999


Q ss_pred             EEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhH--HHHHHHhhcceeeeecccCHHHHH
Q 009756          156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS--YTWSLAALCGTSICLRQVTAKAVY  233 (526)
Q Consensus       156 ~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~  233 (526)
                      +|+|||||||.||+|+++|+++.+.+......+++.+++++++.+|++|.+++.  ..+.+++.|+++++.+..++..++
T Consensus       188 ~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~  267 (617)
T 3rg2_A          188 YFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCF  267 (617)
T ss_dssp             EEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHH
T ss_pred             EEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHH
Confidence            999999999999999999999999999988889999999999999999988875  477788889999888888999999


Q ss_pred             HHHHhcCceeeeccHHHHHHHHccCCCCC--CCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcccc
Q 009756          234 TAIATHGVTHFCAAPVVLNAIANASPEDT--ILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVC  310 (526)
Q Consensus       234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~--~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~  310 (526)
                      +.++++++|++.++|+++..|.+......  .. ++++|.+++|||++++++.+++. .+++++++.||+||++..++..
T Consensus       268 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  346 (617)
T 3rg2_A          268 PLIEKHQVNVTALVPPAVSLWLQALIEGESRAQ-LASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRL  346 (617)
T ss_dssp             HHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTT-TTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCT
T ss_pred             HHHHHhCCcEEEcchHHHHHHHHhhhccccccc-CCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccC
Confidence            99999999999999999999987543222  23 88999999999999999999998 5699999999999987543322


Q ss_pred             ccCCCCCCCCcccccccccccceee-eecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh-cCCe
Q 009756          311 AWKPEWDSLPFETQARLNARQGVRT-ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGW  388 (526)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~  388 (526)
                      .          ........++|.|+ ++. +++|+|++ ++++|.|  +.|||+|+|++++.||+++++.+...| .++|
T Consensus       347 ~----------~~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~  412 (617)
T 3rg2_A          347 D----------DSAEKIIHTQGYPMCPDD-EVWVADAE-GNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGF  412 (617)
T ss_dssp             T----------SCHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEEEEEECSSSCSCCTTCHHHHHHHBCTTSC
T ss_pred             C----------CcccccccCCCccCCCCc-eEEEECCC-CCCCCCC--CceEEEecCccccchhcCChhhhhhccCCCCc
Confidence            1          11122335789997 455 69999976 9999998  899999999999999999999999999 5899


Q ss_pred             eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756          389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG  468 (526)
Q Consensus       389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  468 (526)
                      |+|||+|++++||.++++||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++++..+..      
T Consensus       413 yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------  486 (617)
T 3rg2_A          413 YCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL------  486 (617)
T ss_dssp             EEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------
T ss_pred             eecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC------
Confidence            99999999999999999999999999999999999999999999999999999999888889999999987643      


Q ss_pred             hhHHHHHHHHHh-cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          469 KLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       469 ~~~~~l~~~l~~-~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                       ...++++++++ .|+.|++|+.+++++ ||+|++||++|++|++++.+.
T Consensus       487 -~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~  535 (617)
T 3rg2_A          487 -RAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR  535 (617)
T ss_dssp             -CHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcc
Confidence             34778999988 699999999999998 999999999999999988653

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=2.2e-72  Score=575.25  Aligned_cols=467  Identities=20%  Similarity=0.239  Sum_probs=399.6

Q ss_pred             CccchhhhhhcccccccCccC-CCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLL-FPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~-~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.++++++|++ |   ++ .|.++|++|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|
T Consensus        29 y~eL~~~~~~~A~~-L---~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li  104 (511)
T 3e7w_A           29 YQELWEQSDRAAAA-I---QKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLI  104 (511)
T ss_dssp             HHHHHHHHHHHHHH-H---TTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEE
Confidence            78999999999999 8   77 4888999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756           80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY  159 (526)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~  159 (526)
                      +++.....                ...                  ......++.+++..............++++++|+|
T Consensus       105 ~~~~~~~~----------------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~  150 (511)
T 3e7w_A          105 HAAGLSID----------------AVG------------------QQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIY  150 (511)
T ss_dssp             ESSSCCTT----------------CCC------------------CSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEE
T ss_pred             ecccccch----------------hcc------------------cccceecHhhhhccccCCccccccCCCCCeEEEEE
Confidence            97543110                000                  00112344455544333222223356789999999


Q ss_pred             cCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc---cCHHHHHHHH
Q 009756          160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAI  236 (526)
Q Consensus       160 TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i  236 (526)
                      ||||||.||+|+++|+++.+.+.+....+++..++++++..|++|..++...+.++..|+++++.+.   .++..+++.+
T Consensus       151 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i  230 (511)
T 3e7w_A          151 TSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEEL  230 (511)
T ss_dssp             ECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHH
T ss_pred             CCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHH
Confidence            9999999999999999999999988888999999999999999999998888888888888888765   6899999999


Q ss_pred             HhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccccCC
Q 009756          237 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCAWKP  314 (526)
Q Consensus       237 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~  314 (526)
                      +++++|+++++|+++..++......... ++++|.+++||+++++++.+++. .+ ++++++.||+||+++.++.+....
T Consensus       231 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~  309 (511)
T 3e7w_A          231 KKSGLNVWTSTPSFVQMCLMDPGFSQDL-LPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITN  309 (511)
T ss_dssp             HHHCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECH
T ss_pred             HHcCCcEEEecHHHHHHHHhcccccccc-CCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccc
Confidence            9999999999999999999887655555 89999999999999999999998 45 899999999999988776543221


Q ss_pred             CCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc--CC--eee
Q 009756          315 EWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA--NG--WFH  390 (526)
Q Consensus       315 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~g--~~~  390 (526)
                      +      ........++|.|.+++ +++|+|++ |++++.|  +.|||+++|++++.||+++++.+...|.  +|  ||+
T Consensus       310 ~------~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~  379 (511)
T 3e7w_A          310 D------VISRSESLPVGFAKPDM-NIFIMDEE-GQPLPEG--EKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYR  379 (511)
T ss_dssp             H------HHTTCSSCCCBEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEE
T ss_pred             c------ccccCCcCCCcceeCCC-EEEEECCC-CCCCCCC--CceEEEEecCccChhhCCCcccchhhhcCCCCCEEEe
Confidence            1      00112235799999999 69999987 9999988  8999999999999999999999999983  44  799


Q ss_pred             cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhh
Q 009756          391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL  470 (526)
Q Consensus       391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  470 (526)
                      |||+|++ +||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++++..++.... ..+.
T Consensus       380 TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~-~~~~  457 (511)
T 3e7w_A          380 TGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEK-EFQL  457 (511)
T ss_dssp             EEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSS-HHHH
T ss_pred             CCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccc-hhhH
Confidence            9999999 5999999999999999999999999999999999999999999999888889999999988764321 2225


Q ss_pred             HHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          471 AEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       471 ~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      .++++++++++|+.|++|+.+.+++ ||+|++||++|++|++++.+..-
T Consensus       458 ~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~  506 (511)
T 3e7w_A          458 TSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSH  506 (511)
T ss_dssp             HHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcc
Confidence            6889999999999999999999998 99999999999999999987543

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=3.9e-72  Score=578.24  Aligned_cols=451  Identities=18%  Similarity=0.251  Sum_probs=380.4

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        67 y~eL~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~  142 (563)
T 1amu_A           67 YHELNVKANQLARI-F---IEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLT  142 (563)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+..    ..       ....+..++....                    ... .......+..++|+++|+||
T Consensus       143 ~~~~~~~~~~----~~-------~~~~~~~~~~~~~--------------------~~~-~~~~~~~~~~~~d~a~i~~T  190 (563)
T 1amu_A          143 QKHLVHLIHN----IQ-------FNGQVEIFEEDTI--------------------KIR-EGTNLHVPSKSTDLAYVIYT  190 (563)
T ss_dssp             CGGGHHHHTT----SC-------CCSEEEECCCSTT--------------------TTS-CCSCCCCCCCTTSEEEEEEE
T ss_pred             cCchhhhhhh----cc-------ccCceeeecchhh--------------------ccc-cCccCCCCCCCCCeEEEEEC
Confidence            9876543221    11       1122333322100                    000 01111123467899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc---cCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~  237 (526)
                      |||||.||||++||+++.+........++++++|++++..|++|..++...+.+++.|+++++.+.   .++..+++.++
T Consensus       191 SGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~  270 (563)
T 1amu_A          191 SGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYIN  270 (563)
T ss_dssp             C-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHH
T ss_pred             CCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHH
Confidence            999999999999999999888877778889999999999999999998877888888888888754   68899999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD  317 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~  317 (526)
                      ++++|++.++|+++..|...      . ++++|.+++||+++++++.+++.+. +++++.||+||++.+++.+...... 
T Consensus       271 ~~~~t~~~~~P~~~~~l~~~------~-~~~lr~~~~gG~~l~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~~~~~~~-  341 (563)
T 1amu_A          271 QKEITVITLPPTYVVHLDPE------R-ILSIQTLITAGSATSPSLVNKWKEK-VTYINAYGPTETTICATTWVATKET-  341 (563)
T ss_dssp             HTTCCEEEECHHHHTTSCTT------T-CCSCSEEEEESSCCCHHHHHHHTTT-SEEEEEECCGGGSSCSEEEECCSSC-
T ss_pred             HcCCcEEEeCHHHHHHHHhc------c-cccccEEEEEEecCCHHHHHHHHhC-CeEEEEECcCHHhHhheeeeccccc-
Confidence            99999999999998877543      2 6889999999999999999999864 8999999999998766654322110 


Q ss_pred             CCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcC-------Ceee
Q 009756          318 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN-------GWFH  390 (526)
Q Consensus       318 ~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------g~~~  390 (526)
                             .....++|.|++++ +++|+|++ |++++.|  +.|||+++|++++.||+++++.+...|.+       +||+
T Consensus       342 -------~~~~~~vG~p~~~~-~v~i~d~~-~~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~  410 (563)
T 1amu_A          342 -------IGHSVPIGAPIQNT-QIYIVDEN-LQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYK  410 (563)
T ss_dssp             -------CCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEE
T ss_pred             -------CCCCCcccceeCCC-EEEEECCC-cCCCCCC--CcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEe
Confidence                   11236899999999 69999976 9999988  89999999999999999999999999853       4999


Q ss_pred             cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhh
Q 009756          391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL  470 (526)
Q Consensus       391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  470 (526)
                      |||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++.....       .
T Consensus       411 TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~-------~  483 (563)
T 1amu_A          411 TGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI-------P  483 (563)
T ss_dssp             EEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC-------C
T ss_pred             cCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC-------C
Confidence            999999999999999999999999999999999999999999999999999999988889999999976433       3


Q ss_pred             HHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHH
Q 009756          471 AEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK  514 (526)
Q Consensus       471 ~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~  514 (526)
                      .++|+++++++|+.|++|+.+++++ ||+|++||++|++|++...
T Consensus       484 ~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~  528 (563)
T 1amu_A          484 LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDL  528 (563)
T ss_dssp             HHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCC
T ss_pred             HHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCccc
Confidence            5789999999999999999999998 9999999999999987543

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1.2e-71  Score=571.71  Aligned_cols=469  Identities=21%  Similarity=0.224  Sum_probs=380.9

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        32 y~el~~~~~~lA~~-L---~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~  107 (521)
T 3l8c_A           32 YGQLKRDSDSIAAF-I---DSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIA  107 (521)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEe
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+               ....++.+.                  .+........+ ........++++++|+||
T Consensus       108 ~~~~~~~~---------------~~~~~~~~~------------------~~~~~~~~~~~-~~~~~~~~~~d~a~i~~T  153 (521)
T 3l8c_A          108 IEEFPLTI---------------EGISLVSLS------------------EIESAKLAEMP-YERTHSVKGDDNYYIIFT  153 (521)
T ss_dssp             SSCCCSCC---------------TTSEEEEHH------------------HHHHHHHHTCC-CCCSSCCCTTSEEEEEEC
T ss_pred             cCcccccc---------------ccCcccchh------------------hhhhcccccCC-cccCCCCCCCCcEEEEEc
Confidence            87642110               001111111                  11111111111 111223577899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhH--hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeeccc---CHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQV---TAKAVYTA  235 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~  235 (526)
                      |||||.||+|+++|+++.+...+....  +++..++++++..|++|..++...+.++..|+++++.+..   ++..+++.
T Consensus       154 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~  233 (521)
T 3l8c_A          154 SGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTT  233 (521)
T ss_dssp             CC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHH
T ss_pred             CCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHH
Confidence            999999999999999998877766554  6778999999999999999888888888888888887653   88999999


Q ss_pred             HHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccccC
Q 009756          236 IATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCAWK  313 (526)
Q Consensus       236 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~  313 (526)
                      ++++++|++.++|+++..+.......... ++++|.+++||+++++++.+++. .+ ++++++.||+||+++.++.+...
T Consensus       234 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~  312 (521)
T 3l8c_A          234 IAQLPVGIWTSTPSFADMAMLSDDFCQAK-MPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEIT  312 (521)
T ss_dssp             HHHSCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEEC
T ss_pred             HHHcCCcEEEeCCCHHHHHhhhhcccccc-CccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecc
Confidence            99999999999999999998876655555 89999999999999999999988 44 89999999999998777654322


Q ss_pred             CCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc----CCee
Q 009756          314 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA----NGWF  389 (526)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~g~~  389 (526)
                      ..      ........++|.|++++ +++|+|++ |++++.|  +.|||+++|++++.||+++++.+...|.    +|||
T Consensus       313 ~~------~~~~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~  382 (521)
T 3l8c_A          313 RE------MVDNYTRLPIGYPKPDS-PTYIIDED-GKELSSG--EQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY  382 (521)
T ss_dssp             HH------HHHHCSSCEEEEECTTS-CEEEECTT-SCBCCTT--CCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred             cc------cccCCCccccccccCCC-EEEEECCC-cCCCCCC--CceEEEecccccChhhcCCchHhhccCcCCCCceee
Confidence            10      01112235799999999 69999987 9999988  7999999999999999999999999982    5699


Q ss_pred             ecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCC-CCceeEEEEEecCCCchh--h
Q 009756          390 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER-WGESPCAFVTLKPEADEL--D  466 (526)
Q Consensus       390 ~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~--~  466 (526)
                      +|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++..+.. .++.++++|++.++....  .
T Consensus       383 ~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~  462 (521)
T 3l8c_A          383 HTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDR  462 (521)
T ss_dssp             EEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSS
T ss_pred             eCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccccccc
Confidence            9999999999999999999999999999999999999999999999999999887554 357899999998775321  1


Q ss_pred             hhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756          467 KGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP  518 (526)
Q Consensus       467 ~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~  518 (526)
                      .....++|+++++++|+.|++|+.+.+++ ||+|++||++|++|++++.+...
T Consensus       463 ~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~  515 (521)
T 3l8c_A          463 ELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREG  515 (521)
T ss_dssp             HHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC----
T ss_pred             chhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCc
Confidence            12357899999999999999999999998 99999999999999999876554

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.9e-71  Score=567.51  Aligned_cols=462  Identities=21%  Similarity=0.302  Sum_probs=364.7

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.   +||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        29 y~eL~~~~~~lA~~-L---~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~  101 (501)
T 3ipl_A           29 YQNLYCEASLLAKR-L---KAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFC  101 (501)
T ss_dssp             HHHHHHHHHHHHHH-H---HTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEE
Confidence            78999999999999 8   776   8999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCc------hhhhhhhhc-CcccHHHHHhhCCCCcCCCCCCCCCC
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDS------KQLEYALAR-GAIEYEKFLETGDPEFAWKPPEDEWQ  153 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~  153 (526)
                      +.+.....                 ..++.........      ......... .....+................++++
T Consensus       102 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  164 (501)
T 3ipl_A          102 TLPLELRG-----------------FQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDD  164 (501)
T ss_dssp             SSCCCCTT-----------------SEEEETTC--------------------------------CCHHHHTCCCCCTTS
T ss_pred             cccccccc-----------------ccccccccceeeeeecccccccccccccccccchhhccccCCcccccccCCCCCC
Confidence            87643221                 1111110000000      000000000 00001111111111111122357789


Q ss_pred             eEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHH
Q 009756          154 SIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVY  233 (526)
Q Consensus       154 ~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  233 (526)
                      +++|+|||||||.||+|.++|+++.+........+++++++++++..|++|.+++...+.++..|+++++.+.+++..++
T Consensus       165 ~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~  244 (501)
T 3ipl_A          165 IASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQIL  244 (501)
T ss_dssp             EEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHH
T ss_pred             eEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHHH
Confidence            99999999999999999999999999999888889999999999999999999998888888899999988889999999


Q ss_pred             HHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccC
Q 009756          234 TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWK  313 (526)
Q Consensus       234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~  313 (526)
                      +.++++++|+++++|+++..|.+.....    ..++|.+++||+++++++.+++.++++++++.||+||+++.++.+.. 
T Consensus       245 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-  319 (501)
T 3ipl_A          245 TMIKNERITHISLVPQTLNWLMQQGLHE----PYNLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATP-  319 (501)
T ss_dssp             HHHHHSCCCEEEECHHHHHHHHHHTCCS----CTTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEECH-
T ss_pred             HHHHHcCCcEEEchHHHHHHHHhcCCCC----cCcccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeecCc-
Confidence            9999999999999999999999876543    23899999999999999999999889999999999999765544321 


Q ss_pred             CCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCc
Q 009756          314 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGD  393 (526)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD  393 (526)
                              ........++|.|++++ +++|+|++.      +  +.|||+++|+.++.||+++++.+.. |.+|||+|||
T Consensus       320 --------~~~~~~~~~~G~p~~~~-~~~i~d~~~------~--~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGD  381 (501)
T 3ipl_A          320 --------EMLHARPDTVGMPSANV-DVKIKNPNK------E--GHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGD  381 (501)
T ss_dssp             --------HHHHHCTTCCBEECTTC-EEEEESCCS------S--CCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEE
T ss_pred             --------cccccCCCCCCCCCCCc-EEEEecCCC------C--CccEEEEeccchhhhhCcChhhcch-hcCCceecCC
Confidence                    11122346899999999 699999761      2  5799999999999999999998887 8899999999


Q ss_pred             eeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHH
Q 009756          394 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAED  473 (526)
Q Consensus       394 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  473 (526)
                      +|++++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++++.....       ..++
T Consensus       382 l~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~-------~~~~  454 (501)
T 3ipl_A          382 IAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI-------SKAQ  454 (501)
T ss_dssp             EEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC-------CHHH
T ss_pred             EEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC-------CHHH
Confidence            999999999999999999999999999999999999999999999999999998899999999875443       4578


Q ss_pred             HHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          474 VSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       474 l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      ++++++++|+.|++|+.+.+++ ||+|++||++|++|++...+.
T Consensus       455 l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~  498 (501)
T 3ipl_A          455 LIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH  498 (501)
T ss_dssp             HHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred             HHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence            9999999999999999999998 999999999999999887653

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=3.4e-72  Score=580.88  Aligned_cols=452  Identities=21%  Similarity=0.278  Sum_probs=291.0

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   +++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus       103 y~el~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~  178 (570)
T 4gr5_A          103 YGALNERANRLAHR-L---VGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVT  178 (570)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEe
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+       .       ... .+.+.+..                     ..............++|+++|+||
T Consensus       179 ~~~~~~~~-------~-------~~~-~~~~~~~~---------------------~~~~~~~~~~~~~~~~d~a~i~~T  222 (570)
T 4gr5_A          179 SRPLSGRL-------T-------GTT-TLYVEDEA---------------------ASDAPAGNLATGVGPEDVACVMFT  222 (570)
T ss_dssp             CTTTTTSS-------C-------SSE-EEECCC----------------------------CCCCCCCCCTTSEEEEECC
T ss_pred             cchhhhcc-------c-------CCc-ceeeeccc---------------------cccccccccCCCCCCCCeEEEEEC
Confidence            87643211       0       111 11111110                     000011111123577899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec--ccCHHHHHHHHHh
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR--QVTAKAVYTAIAT  238 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~i~~  238 (526)
                      |||||.||+|+++|+++.+.... ...+++++++++++.+|++|..+....+.++..|+++++.+  .+++..+++.+++
T Consensus       223 SGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~  301 (570)
T 4gr5_A          223 SGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVAR  301 (570)
T ss_dssp             SSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHH
T ss_pred             CcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHH
Confidence            99999999999999998766554 34557889999999999998877777778888888888875  4789999999999


Q ss_pred             cCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCccccccCCCC
Q 009756          239 HGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPEW  316 (526)
Q Consensus       239 ~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~  316 (526)
                      +++|++.++|+++..|.+....   . ++++|.+++||++++++..+++.+ + ++++++.||+||++++++....... 
T Consensus       302 ~~vt~~~~~P~~~~~l~~~~~~---~-~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~-  376 (570)
T 4gr5_A          302 HGVTMLQLSASLFNFLVDEVPE---A-FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAG-  376 (570)
T ss_dssp             HTCCEEEEEHHHHHHHHHHCGG---G-GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGG-
T ss_pred             cCCcEEEecHHHHHHHHhhchh---h-CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeeccc-
Confidence            9999999999999999976532   2 789999999999999999888874 4 8999999999999877665432211 


Q ss_pred             CCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc---------CC
Q 009756          317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA---------NG  387 (526)
Q Consensus       317 ~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~---------~g  387 (526)
                            .......++|.|++++ +++|+|++ +++++.|  +.|||+|+|++++.||+++++.+...|.         +|
T Consensus       377 ------~~~~~~~~iG~p~~~~-~v~i~d~~-~~~~~~G--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~  446 (570)
T 4gr5_A          377 ------DLSGTALPIGVPLAGK-RAYVLDDD-LKPAANG--ALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGER  446 (570)
T ss_dssp             ------GTTSSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCE
T ss_pred             ------ccCCCccccceeeCCC-EEEEECCC-CCCCCCC--CcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCE
Confidence                  1111235689999999 69999987 9999988  8999999999999999999999999984         26


Q ss_pred             eeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhh
Q 009756          388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDK  467 (526)
Q Consensus       388 ~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  467 (526)
                      ||+|||+|++++||+++++||.||+||++|++|+|.+||++|.++|+|.+++|++.+++.+++.++++|+........  
T Consensus       447 w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~--  524 (570)
T 4gr5_A          447 MYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPP--  524 (570)
T ss_dssp             EEEEEEEEEECTTSCEEEEEC-----------------------------------------------------------
T ss_pred             EEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCc--
Confidence            999999999999999999999999999999999999999999999999999999999988889999999876543221  


Q ss_pred             hhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHH
Q 009756          468 GKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK  512 (526)
Q Consensus       468 ~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~  512 (526)
                        ..++|+++|+++|+.|++|+.+++++ ||+|++||++|++|++.
T Consensus       525 --~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          525 --DAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS  568 (570)
T ss_dssp             ----------------------------------------------
T ss_pred             --CHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence              56889999999999999999999888 99999999999999875

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=4.4e-72  Score=614.67  Aligned_cols=483  Identities=24%  Similarity=0.335  Sum_probs=317.5

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+
T Consensus        91 Y~eL~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~  166 (979)
T 3tsy_A           91 YSDVHVISRQIAAN-F---HKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIIT  166 (979)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCC--cCCCCCCCCCCeEEEE
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE--FAWKPPEDEWQSIALG  158 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~i~  158 (526)
                      +++....+.......         ...++.++.....      ....+...+.++.......  ........++|+++|+
T Consensus       167 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~  231 (979)
T 3tsy_A          167 EARYVDKIKPLQNDD---------GVVIVCIDDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALP  231 (979)
T ss_dssp             CSTTTTTSHHHHHTS---------CCEEEECCCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECC
T ss_pred             ChHHHHHHHHHhhcC---------CceEEEeCCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEE
Confidence            988776665554322         2345555443111      0112334555554433221  1122335789999999


Q ss_pred             ecCCCCCCccceeecchhHHHHHHhhHh----HhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecccCHHHHH
Q 009756          159 YTSGTTASPKGVVVSHRGAYLMSLNGAL----IWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQVTAKAVY  233 (526)
Q Consensus       159 ~TSGsTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~  233 (526)
                      |||||||.||+|+++|+++.+.+.....    .+.+.+++++++.+|++|.+++.. .+..+..|+++++.+.+++..++
T Consensus       232 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~  311 (979)
T 3tsy_A          232 YSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLL  311 (979)
T ss_dssp             BCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHH
T ss_pred             eCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHH
Confidence            9999999999999999999888766543    346788999999999999999854 45667778888888889999999


Q ss_pred             HHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccc
Q 009756          234 TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCA  311 (526)
Q Consensus       234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~  311 (526)
                      +.++++++|++.++|+++..|.+........ ++++|.+++||+++++++.+++. .+ ++++++.||+||++++++.+.
T Consensus       312 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~  390 (979)
T 3tsy_A          312 ELIQRCKVTVAPMVPPIVLAIAKSSETEKYD-LSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSL  390 (979)
T ss_dssp             HHHHHHTCCEEEECHHHHHHHHHCGGGGTSC-CTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECG
T ss_pred             HHHHHhCCeEEEcHHHHHHHHHhCccccCCC-ccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCC
Confidence            9999999999999999999999887665555 89999999999999999999998 45 899999999999987665542


Q ss_pred             cCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh-cCCeee
Q 009756          312 WKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFH  390 (526)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~  390 (526)
                      ....      .......+++|.|++++ +++|+|++++++++.|  +.|||+|+|++++.||+++++.+...| .+|||+
T Consensus       391 ~~~~------~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~  461 (979)
T 3tsy_A          391 GFAK------EPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICIRGHQIMKGYLNNPAATAETIDKDGWLH  461 (979)
T ss_dssp             GGSS------SCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred             CCCC------CccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEEECCCccccccCChhhhhhhccCCCcEE
Confidence            1111      01112347899999999 6999998889999998  789999999999999999999999999 589999


Q ss_pred             cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhh
Q 009756          391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL  470 (526)
Q Consensus       391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  470 (526)
                      |||+|++++||+++++||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|+..++...     .
T Consensus       462 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~-----~  536 (979)
T 3tsy_A          462 TGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSEL-----S  536 (979)
T ss_dssp             EEEEEEECTTSCEEEEEESCC-----------------------------------------------------------
T ss_pred             cCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCC-----C
Confidence            99999999999999999999999999999999999999999999999999999998889999999998766444     5


Q ss_pred             HHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          471 AEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       471 ~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                      .++++++++++|+.|++|+.+.+++ ||+|++||++|++|++++.+..
T Consensus       537 ~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  584 (979)
T 3tsy_A          537 EDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL  584 (979)
T ss_dssp             ------------------------------------------------
T ss_pred             HHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence            6789999999999999999999888 9999999999999999987643

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=2.2e-70  Score=569.65  Aligned_cols=446  Identities=17%  Similarity=0.195  Sum_probs=365.9

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++++
T Consensus        55 Y~eL~~~a~~lA~~-L---~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~  130 (620)
T 4dg8_A           55 YRQLLDSAEQLSDY-L---LEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILD  130 (620)
T ss_dssp             HHHHHHHHHHHHHH-H---HHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEe
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999997


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      ++......       .       ... .+.+...                       .............++++++|+||
T Consensus       131 ~~~~~~~~-------~-------~~~-~~~~~~~-----------------------~~~~~~~~~~~~~~~d~a~iiyT  172 (620)
T 4dg8_A          131 CSTTPTPA-------N-------GLP-CVPVRHL-----------------------PAAPASVARPCFAADQIAYINFS  172 (620)
T ss_dssp             CCSSCCCC-------T-------TSC-EEEGGGC-----------------------CCCCCCSSCCCCCTTSEEEEEEE
T ss_pred             cCcccccc-------c-------CCc-eeeeccC-----------------------CcCCccccCCCCCCCCeEEEEEC
Confidence            65432100       0       011 1111000                       00111111122467899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec--ccCHHHHHHHHHh
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR--QVTAKAVYTAIAT  238 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~i~~  238 (526)
                      |||||.||||+++|+++.+.+.. ...+++.++++++...|++|..++...+.++..|+++++.+  .+++..+++.+++
T Consensus       173 SGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~  251 (620)
T 4dg8_A          173 SGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGE  251 (620)
T ss_dssp             BSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHT
T ss_pred             CCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHH
Confidence            99999999999999998777655 45678899999999999999999988888999999888863  5789999999999


Q ss_pred             cCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccccCCCC
Q 009756          239 HGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCAWKPEW  316 (526)
Q Consensus       239 ~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~  316 (526)
                      +++|+++++|+++..|.+...   .. ++++|.+++|||+++++..+++. .+ ++++++.||+||++.+++.+..... 
T Consensus       252 ~~vt~~~~~Ps~~~~l~~~~~---~~-l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-  326 (620)
T 4dg8_A          252 RGADSAWLTASLFNTLVDLDP---DC-LGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDD-  326 (620)
T ss_dssp             TCCCEEEEEHHHHHHHHHHCG---GG-GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTG-
T ss_pred             hCCcEEEccHHHHHHHHhcCh---hh-CCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecccc-
Confidence            999999999999999987533   22 78999999999999988888876 33 8999999999999877665432211 


Q ss_pred             CCCCcccccccccccceeeeecCCceeecCCCCCc-cCCCCCceEEEEEcCccccccccCChhhhhhhhcC--------C
Q 009756          317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQP-VPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN--------G  387 (526)
Q Consensus       317 ~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~-~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------g  387 (526)
                            .......++|.|++++ +++|+|++ +++ ++.|  +.|||+|+|++++.||+++++.+...|.+        +
T Consensus       327 ------~~~~~~~~iG~p~~~~-~~~i~d~~-~~~~~~~g--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~  396 (620)
T 4dg8_A          327 ------DLEEDDIPIGKAIAGT-AVLLLDEH-GQEIAEPD--RAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLR  396 (620)
T ss_dssp             ------GGGSSSCCCBEECTTE-EEEEECTT-SCBCCSSS--CCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEE
T ss_pred             ------ccCCCCCCceecccCc-EEEEECcc-CCCCCCCC--CceEEEEeccccccccCCChhhhhhhhccCCCCCCCce
Confidence                  1122336899999999 69999988 555 6777  79999999999999999999999999964        7


Q ss_pred             eeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhh
Q 009756          388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDK  467 (526)
Q Consensus       388 ~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  467 (526)
                      ||+|||+|++++||+++++||.||+||++|++|+|.+||.+|.++|+|.+|+|++.++...++ ++++++....      
T Consensus       397 ~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~-lv~~~~~~~~------  469 (620)
T 4dg8_A          397 AYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ-LLCAWTGKAD------  469 (620)
T ss_dssp             EEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE-EEEEEEECTT------
T ss_pred             EEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE-EEEEEecChH------
Confidence            999999999999999999999999999999999999999999999999999999988775333 4444443322      


Q ss_pred             hhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          468 GKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       468 ~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                           .+.+.+.++|+.|++|+.+++++ ||+|++||++|++|++++.+.
T Consensus       470 -----~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~  514 (620)
T 4dg8_A          470 -----ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP  514 (620)
T ss_dssp             -----CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred             -----HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence                 12345667899999999999988 999999999999999887643

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=8.3e-71  Score=561.66  Aligned_cols=445  Identities=26%  Similarity=0.347  Sum_probs=358.9

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ..     |++|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        51 y~eL~~~~~~~A~~-L---~~-----~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~  121 (505)
T 3nyq_A           51 YAELAAAAGATAGR-I---GG-----AGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLA  121 (505)
T ss_dssp             HHHHHHHHHHHHTT-C---C--------CEEEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEE
T ss_pred             HHHHHHHHHHHHhh-c---cC-----CCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEE
Confidence            78999999999999 8   52     789999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +.+....     ....        ....+.++..                         ..........+++++++|+||
T Consensus       122 ~~~~~~~-----~~~~--------~~~~~~~~~~-------------------------~~~~~~~~~~~~~d~a~i~~T  163 (505)
T 3nyq_A          122 PPDAELP-----PALG--------ALERVDVDVR-------------------------ARGAVPEDGADDGDPALVVYT  163 (505)
T ss_dssp             CTTCCCC-----GGGT--------TSEEEECCTT-------------------------CCCCCCCCCCCTTSEEEEEEE
T ss_pred             CCccccc-----hhhc--------cccccccccc-------------------------cccCCCCCCCCCCCeEEEEeC
Confidence            8652100     0000        1111111110                         001111123567899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhH-HHHHHHhhcceeeeecccCHHHHHHHHHhc
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSICLRQVTAKAVYTAIATH  239 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  239 (526)
                      |||||.||+|+++|+++.+.+......+++++++++++.+|++|..++. ..+.++..|+++++...+++..+++.+ ++
T Consensus       164 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~  242 (505)
T 3nyq_A          164 SGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-ND  242 (505)
T ss_dssp             CCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TT
T ss_pred             CCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hh
Confidence            9999999999999999999999988889999999999999999999875 466777888888888889999999999 88


Q ss_pred             CceeeeccHHHHHHHHccCCCC---CCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCC
Q 009756          240 GVTHFCAAPVVLNAIANASPED---TILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       240 ~~t~l~~~P~~~~~l~~~~~~~---~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      ++|+++++|+++..|.+.....   ... ++++|.+++||+++++++.+++. .+++++++.||+||++..++.....  
T Consensus       243 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~-l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~--  319 (505)
T 3nyq_A          243 GATMLFGVPTMYHRIAETLPADPELAKA-LAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADG--  319 (505)
T ss_dssp             TCCEEEECHHHHHHHHHHGGGCHHHHHH-HHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS--
T ss_pred             CCeEEEehHHHHHHHHHhhhcCchhhcc-cccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCC--
Confidence            9999999999999998753221   122 67899999999999999999998 4599999999999997655432211  


Q ss_pred             CCCCCcccccccccccceeeeecCCceeecCCCCCccCC-CCCceEEEEEcCccccccccCChhhhhhhhc-CCeeecCc
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPA-DGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGD  393 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~-~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD  393 (526)
                               .....++|.|++++ +++|+|++ |++++. .+++.|||+++|++++.||+++++.+...|. +|||+|||
T Consensus       320 ---------~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGD  388 (505)
T 3nyq_A          320 ---------EPRAGTVGVPLPGV-ELRLVEED-GTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGD  388 (505)
T ss_dssp             ---------CCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEE
T ss_pred             ---------CCCCCCcccCCCCC-EEEEECCC-CCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCC
Confidence                     12236899999999 69999987 888876 2237999999999999999999999999995 89999999


Q ss_pred             eeEEcCCceEEEeccc-cceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHH
Q 009756          394 LAVKHPDNYIEIKDRL-KDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAE  472 (526)
Q Consensus       394 ~~~~~~~g~~~~~GR~-~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  472 (526)
                      +|++++||++++.||. ||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|+..+.....    ..+
T Consensus       389 l~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~----~~~  464 (505)
T 3nyq_A          389 MAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPP----ALG  464 (505)
T ss_dssp             EEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCC----CHH
T ss_pred             eEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCC----CHH
Confidence            9999999999999998 58999999999999999999999999999999999998899999999987643221    568


Q ss_pred             HHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHH
Q 009756          473 DVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA  511 (526)
Q Consensus       473 ~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~  511 (526)
                      +|+++++++|+.|++|+.+.+++ ||+|++||++|++|++
T Consensus       465 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          465 TLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR  504 (505)
T ss_dssp             HHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred             HHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence            89999999999999999999988 9999999999999986

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.8e-69  Score=560.48  Aligned_cols=468  Identities=18%  Similarity=0.190  Sum_probs=288.7

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   .+.|+ +||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus        58 y~eL~~~~~~lA~~-L---~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~  132 (562)
T 3ite_A           58 YKKLNETANQVANL-I---IHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFV  132 (562)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEE
Confidence            78999999999999 9   89999 7999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +++....+.     ..       ....++...                ...+.+.+........ .....++++++|+||
T Consensus       133 ~~~~~~~~~-----~~-------~~~~~~~~~----------------~~~~~~~~~~~~~~~~-~~~~~~~~~a~i~~T  183 (562)
T 3ite_A          133 CDNNFDGVE-----LP-------PETKVLDTK----------------NQSFIENLSTQDTSDI-LNNYPENLDAYLLYT  183 (562)
T ss_dssp             CTTTTTTCC-----CC-------TTCEEEETT----------------CHHHHHHHHHSCCSCC-CCCCCTTSEEEEEEE
T ss_pred             ccccccccc-----cC-------ccceeeccc----------------chhhhhhccccccccc-ccCCCCCCcEEEEEC
Confidence            875432110     00       111222111                1223333333322221 123457789999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhH--------hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccC-HHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALI--------WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVT-AKA  231 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~--------~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~  231 (526)
                      |||||.||+|+++|+++.+........        +.+...+++++..|++|..++...+.++..|++++...... +..
T Consensus       184 SGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~  263 (562)
T 3ite_A          184 SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDD  263 (562)
T ss_dssp             CC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHS
T ss_pred             CCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHH
Confidence            999999999999999998877665443        34677899999999999888887888888888887765433 467


Q ss_pred             HHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-cCCeeecccccccCCCCcccc
Q 009756          232 VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVC  310 (526)
Q Consensus       232 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~  310 (526)
                      +++.++++++|+++++|++++.+....    .. ++++|.+++||+++++++.+++.+ +++++++.||+||+++.++..
T Consensus       264 ~~~~i~~~~~t~~~~~P~~l~~~~~~~----~~-~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  338 (562)
T 3ite_A          264 LPRTFRELGVTHAGIVPSLLDQTGLVP----ED-APHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAG  338 (562)
T ss_dssp             HHHHHHHTTCCEEEECHHHHHHHTCCG----GG-STTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEE
T ss_pred             HHHHHHHcCCCEEEcCHHHHhhcccCc----cc-cCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeee
Confidence            889999999999999999988875443    23 789999999999999999999985 489999999999998766654


Q ss_pred             ccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCC--e
Q 009756          311 AWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG--W  388 (526)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g--~  388 (526)
                      ...+.          ....++|.|++++ +++|+|++++++++.|  +.|||+++|++++.||+++++.+...+.+|  |
T Consensus       339 ~~~~~----------~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w  405 (562)
T 3ite_A          339 RILPD----------SDTRCIGHPLGDS-VAHVLAPGSNEHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDINGRKM  405 (562)
T ss_dssp             ECCTT----------SCTTEEEEECTTC-EEEEECTTSSCBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEETTEEE
T ss_pred             eecCC----------CCCccccccCCCC-eEEEEeCCCCCCCCCC--CceEEEEeccccchhhCCCccccccccCCCCEE
Confidence            33221          1236789999999 6999999889999988  899999999999999999999888777777  9


Q ss_pred             eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcC-CCeeeeEEEEcCCCCCCceeEEEEEecCCCch---
Q 009756          389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH-PLVLEAAVVARPDERWGESPCAFVTLKPEADE---  464 (526)
Q Consensus       389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---  464 (526)
                      |+|||+|++++||++++.||.||+||++|++|+|.+||++|.++ +.+.+++|++.+++..++..+++++...+...   
T Consensus       406 ~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~  485 (562)
T 3ite_A          406 YRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGE  485 (562)
T ss_dssp             EEEEEEEEECTTSCEEEEEEC-----------------------------------------------------------
T ss_pred             EecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccccccc
Confidence            99999999999999999999999999999999999999999998 77889999988888877766666555433221   


Q ss_pred             -----hhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCC-CCccccHHHHHHHHHhcCCcc
Q 009756          465 -----LDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKS-ATGKIQKHLLRAKAKEMGPVK  520 (526)
Q Consensus       465 -----~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t-~~GKv~r~~l~~~~~~~~~~~  520 (526)
                           ++.....++|+++|+++|+.|++|+.+.+++ ||+| ++||++|++|++++.+....+
T Consensus       486 ~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~~~~~  548 (562)
T 3ite_A          486 LRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTLSLGE  548 (562)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             ccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhccCHHH
Confidence                 1112234689999999999999999999988 9998 899999999999998766544

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.1e-68  Score=556.67  Aligned_cols=476  Identities=18%  Similarity=0.171  Sum_probs=379.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCcc---ChHHHHHHHhhcCceE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRL---NATVVAFILSHASSAV   77 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~   77 (526)
                      |+||.++++++|++ |   ++.|+++||+|+++++|++++++++|||+++|++++|+++.+   +.+++.++++.+++++
T Consensus        43 y~eL~~~~~~lA~~-L---~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~  118 (590)
T 3kxw_A           43 YEQLDQHAKAIAAT-L---QAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVI  118 (590)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCE
Confidence            78999999999999 9   999999999999999999999999999999999999999987   4578999999999999


Q ss_pred             EEEccchHHHHHHHH-HHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEE
Q 009756           78 VIVDQEFFSLAEEAL-KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA  156 (526)
Q Consensus        78 vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~  156 (526)
                      ++++.+....+.... ...+       ....+..+....                   +... ...........++++++
T Consensus       119 vi~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~d~a~  171 (590)
T 3kxw_A          119 VLMIADHIKKFTADELNTNP-------KFLKIPAIALES-------------------IELN-RSSSWQPTSIKSNDIAF  171 (590)
T ss_dssp             EEECHHHHHHHCC-----CC-------EETTEEEEEGGG-------------------CCGG-GGGGCCCCCCCTTSEEE
T ss_pred             EEeCHHHHHHHHHhhhhhcc-------cccccceeechh-------------------cccc-ccccCCCCCCCCCCeEE
Confidence            999987655443322 1111       111111111110                   0000 00111112357789999


Q ss_pred             EEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeeccc----CHHH
Q 009756          157 LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQV----TAKA  231 (526)
Q Consensus       157 i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~----~~~~  231 (526)
                      |+|||||||.||+|++||+++.+.+......+++++++++++.+|++|..++.. .+.++..|+++++.+..    ++..
T Consensus       172 i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~  251 (590)
T 3kxw_A          172 LQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLS  251 (590)
T ss_dssp             EEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHH
T ss_pred             EEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHH
Confidence            999999999999999999999999999989999999999999999999999876 55566667767666544    7899


Q ss_pred             HHHHHHhcCceeeeccHHHHHHHHccCC---CCCCCCCCceeeEeccCCCCCHHHHHHHhh-c------CCeeecccccc
Q 009756          232 VYTAIATHGVTHFCAAPVVLNAIANASP---EDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K------GFRITHTYGLT  301 (526)
Q Consensus       232 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~---~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~------~~~i~~~YG~t  301 (526)
                      +++.++++++|++.++|..+..+.+...   ..... ++++|.+++||+++++++.+++.+ +      +.++++.||+|
T Consensus       252 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~-l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~T  330 (590)
T 3kxw_A          252 WLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLD-LSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLA  330 (590)
T ss_dssp             HHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCC-CTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECG
T ss_pred             HHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCC-chhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccc
Confidence            9999999999999999999999887632   22334 899999999999999999999874 3      34799999999


Q ss_pred             cCCCCccccccCCCCCCC----------------CcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEc
Q 009756          302 ELTGPASVCAWKPEWDSL----------------PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMR  365 (526)
Q Consensus       302 E~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~  365 (526)
                      |++++++.......+...                +.........++|.|+++   ++|+|++++.+++.|  +.|||+|+
T Consensus       331 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~---v~i~d~~~~~~~~~g--~~GEl~v~  405 (590)
T 3kxw_A          331 EATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE---VKIIDPDTLIPCDFD--QVGEIWVQ  405 (590)
T ss_dssp             GGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE---EEEECTTTCCBCCTT--BCEEEEEE
T ss_pred             cccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC---eEEEcCCCCcCCCCC--CEEEEEEe
Confidence            998877654322111000                001112334678999887   788999889999988  89999999


Q ss_pred             CccccccccCChhhhhhhhcC-------C--eeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHH-HcCCCe
Q 009756          366 GSCVMKGYLKNPKANEEAFAN-------G--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL-YLHPLV  435 (526)
Q Consensus       366 ~~~~~~gy~~~~~~~~~~~~~-------g--~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l-~~~~~v  435 (526)
                      |++++.||+++++.+...|.+       |  ||+|||+|+++ ||.+++.||.||+||++|++|+|.+||.+| ..+|.|
T Consensus       406 g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v  484 (590)
T 3kxw_A          406 SNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHH  484 (590)
T ss_dssp             STTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGG
T ss_pred             CCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccc
Confidence            999999999999999999964       5  99999999999 999999999999999999999999999999 788999


Q ss_pred             e--eeEEEEcCCCCCCceeEEEEEecCCCc-hhhhhhhHHHHHHHHHhcCCC-ccCCc-EEEec--c-ccCCCCccccHH
Q 009756          436 L--EAAVVARPDERWGESPCAFVTLKPEAD-ELDKGKLAEDVSKFCRAKMPS-YWVPK-SVVFA--A-LPKSATGKIQKH  507 (526)
Q Consensus       436 ~--~~~v~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~l~~~l~~~l~~-~~~p~-~~~~~--~-lP~t~~GKv~r~  507 (526)
                      .  +|+|++.+++. ++.++++++..++.. ..    ..+++.++|+++++. +++|. .+.++  + ||+|++||++|+
T Consensus       485 ~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~----~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~  559 (590)
T 3kxw_A          485 VLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDV----AQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRN  559 (590)
T ss_dssp             GEEEEEEEEEEETT-EEEEEEEEEESCTTCCHH----HHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHH
T ss_pred             cCccEEEEEecCCC-CceEEEEEEeccccccch----hHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHH
Confidence            8  79999988776 778888988876642 21    456777777777764 67775 45544  5 999999999999


Q ss_pred             HHHHHHHhcCCc
Q 009756          508 LLRAKAKEMGPV  519 (526)
Q Consensus       508 ~l~~~~~~~~~~  519 (526)
                      +|++++.+....
T Consensus       560 ~L~~~~~~~~~~  571 (590)
T 3kxw_A          560 FCRKHLLDKTLP  571 (590)
T ss_dssp             HHHHHHHHTCSC
T ss_pred             HHHHHHHcCCCc
Confidence            999999977653

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=4.5e-67  Score=588.69  Aligned_cols=455  Identities=21%  Similarity=0.261  Sum_probs=383.8

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   ++.|+++|++|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+
T Consensus       492 Y~eL~~~a~~lA~~-L---~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~  567 (1304)
T 2vsq_A          492 YRELDEEANRIARR-L---QKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLT  567 (1304)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +.+....+.    .++       .....+.+++..               .    ....  .........++++|||+||
T Consensus       568 ~~~~~~~~~----~~~-------~~~~~~~~~~~~---------------~----~~~~--~~~~~~~~~~~~~ayiiyT  615 (1304)
T 2vsq_A          568 HQEMKEQAA----ELP-------YTGTTLFIDDQT---------------R----FEEQ--ASDPATAIDPNDPAYIMYT  615 (1304)
T ss_dssp             CSTTCTTST----TCC-------CCSEEEESSCGG---------------G----GGSC--SSCCCCCCCTTSEEEEEEE
T ss_pred             Ccchhhhhh----ccC-------CCCcEEEecccc---------------c----cccc--cCCCCCCCCCCCeEEEEeC
Confidence            876433211    011       112233332210               0    0001  1111123568899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc---cCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~  237 (526)
                      |||||.||||+++|+++.+. ......++++++++++...|++|..+....+.++..|+++++.+.   .++..+++.++
T Consensus       616 SGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~  694 (1304)
T 2vsq_A          616 SGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLIL  694 (1304)
T ss_dssp             CCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHH
T ss_pred             CCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHH
Confidence            99999999999999998865 444556788899999999999999888888888889998888753   68999999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCccccccCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPE  315 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~  315 (526)
                      ++++|+++++|+++..|.....   .. ++++|.+++|||++++++.+++.+ + +++++|.||+||++.+++.+.....
T Consensus       695 ~~~vt~~~~~p~~~~~l~~~~~---~~-~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~  770 (1304)
T 2vsq_A          695 QENVNVMFATTALFNLLTDAGE---DW-MKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDL  770 (1304)
T ss_dssp             HHTCCEEEEEHHHHHHHHHHCS---HH-HHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCC
T ss_pred             HcCCcEEEccHHHHHHHHhhch---hc-CCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCc
Confidence            9999999999999999987532   12 678999999999999999999874 3 5789999999999877765432210


Q ss_pred             CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-------CCe
Q 009756          316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-------NGW  388 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~g~  388 (526)
                             .......++|.|++++ +++|+|++ ++++|.|  +.|||+|+|+++++||+++++.+..+|.       ++|
T Consensus       771 -------~~~~~~~~iG~p~~~~-~~~i~d~~-~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~  839 (1304)
T 2vsq_A          771 -------PDSISSLPIGKPISNA-SVYILNEQ-SQLQPFG--AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETL  839 (1304)
T ss_dssp             -------CSSCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEE
T ss_pred             -------cccCCCCCCceeeCCC-EEEEECCC-cCCCCCC--CceEEEEeccccCccccCCcccchhhhccCCCCCCCee
Confidence                   0111236799999999 69999987 9999998  8999999999999999999999999994       349


Q ss_pred             eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756          389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG  468 (526)
Q Consensus       389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  468 (526)
                      |+|||+|++++||.++++||.||+||++|.+|+|.+||.+|.++|+|.+++|++.++...++.++++++.....      
T Consensus       840 yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~------  913 (1304)
T 2vsq_A          840 YRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL------  913 (1304)
T ss_dssp             EEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS------
T ss_pred             EecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC------
Confidence            99999999999999999999999999999999999999999999999999999998888888999999976533      


Q ss_pred             hhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHH
Q 009756          469 KLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK  514 (526)
Q Consensus       469 ~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~  514 (526)
                       ..++++++++++||.|++|+.+++++ ||+|++||++|++|++...
T Consensus       914 -~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~  959 (1304)
T 2vsq_A          914 -SAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQ  959 (1304)
T ss_dssp             -CHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCG
T ss_pred             -CHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcch
Confidence             35789999999999999999999888 9999999999999976543

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=5.3e-54  Score=436.89  Aligned_cols=369  Identities=19%  Similarity=0.186  Sum_probs=286.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccC---ccChHHHHHHHhhcCceE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINI---RLNATVVAFILSHASSAV   77 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~   77 (526)
                      |+||.++++++|++ |   ++.|+ +||+|+|+++|++++++++|||+++|++++|+++   .++.+++.++++.+++++
T Consensus        61 y~el~~~~~~lA~~-L---~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~  135 (480)
T 3t5a_A           61 WSQLYRRTLNVAQE-L---SRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVA  135 (480)
T ss_dssp             HHHHHHHHHHHHHH-H---TTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSE
T ss_pred             HHHHHHHHHHHHHH-H---HhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCE
Confidence            78999999999999 9   99996 9999999999999999999999999999999999   788999999999999999


Q ss_pred             EEEccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEE
Q 009756           78 VIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIAL  157 (526)
Q Consensus        78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i  157 (526)
                      +|++++....+.+........     ....++.++....                      ............++++++|
T Consensus       136 vi~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~d~a~i  188 (480)
T 3t5a_A          136 ILTTSSAVDDVVQHVARRPGE-----SPPSIIEVDLLDL----------------------DAPNGYTFKEDEYPSTAYL  188 (480)
T ss_dssp             EEECTTTHHHHHHTCC-----------CCEEEEGGGSCT----------------------TCC---CCCCSSCCSEEEE
T ss_pred             EEeChhHHHHHHHHHhccccc-----cccceeEeccccc----------------------ccccCCCCCCCCCCceEEE
Confidence            999998776655432222100     1123333322110                      0111111223567899999


Q ss_pred             EecCCCCCCccceeecchhHHHHHHhhHhHhCCcC------CcEEEEecccccchhhHH-HHHHHhhcceeeeecc----
Q 009756          158 GYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNE------GAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQ----  226 (526)
Q Consensus       158 ~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~------~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~----  226 (526)
                      +|||||||.||+|++||+++.+.+......+.+..      ++++++.+|++|..++.. .+.++..|+++++.+.    
T Consensus       189 ~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~  268 (480)
T 3t5a_A          189 QYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFL  268 (480)
T ss_dssp             ECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHH
T ss_pred             EecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHH
Confidence            99999999999999999999999888888888777      999999999999999765 4566667777777654    


Q ss_pred             cCHHHHHHHHHhcCceeeeccHHHHHHHHccC----CCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc------CCeee
Q 009756          227 VTAKAVYTAIATHGVTHFCAAPVVLNAIANAS----PEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK------GFRIT  295 (526)
Q Consensus       227 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~----~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~------~~~i~  295 (526)
                      .++..+++.++++++| +.++|+++..++...    ...... ++++|.+++||+++++++.+++. .+      +++++
T Consensus       269 ~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~  346 (480)
T 3t5a_A          269 QRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRD-LGNILTILSGSERVQAATIKRFADRFARFNLQERVIR  346 (480)
T ss_dssp             HCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCC-CTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEE
T ss_pred             HCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccc-hhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhcc
Confidence            3899999999999999 888998888877642    222334 89999999999999999999998 43      24799


Q ss_pred             cccccccCCCCccccccCCCCCCCCc--------------ccccccccccceeeeecCCceeecCCCCCccCCCCCceEE
Q 009756          296 HTYGLTELTGPASVCAWKPEWDSLPF--------------ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGE  361 (526)
Q Consensus       296 ~~YG~tE~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Ge  361 (526)
                      +.||+||++++++.............              ........++|.|++ + +++|+|+++|++++.|  +.||
T Consensus       347 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g--~~GE  422 (480)
T 3t5a_A          347 PSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG--TVGE  422 (480)
T ss_dssp             EEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--BCEE
T ss_pred             ccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--CEEE
Confidence            99999999877665433211100000              000233468999999 7 6999999888999998  8999


Q ss_pred             EEEcCccccccccCChhhhhhhh------------cCCeeecCceeEEcCCceEEEecc
Q 009756          362 IVMRGSCVMKGYLKNPKANEEAF------------ANGWFHSGDLAVKHPDNYIEIKDR  408 (526)
Q Consensus       362 l~v~~~~~~~gy~~~~~~~~~~~------------~~g~~~tGD~~~~~~~g~~~~~GR  408 (526)
                      |+|+|++++.||+++++.+.+.|            .+|||+|||+|+++ ||+++++||
T Consensus       423 l~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          423 IWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             EEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             EEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            99999999999999999999999            35699999999997 999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=4.4e-53  Score=410.42  Aligned_cols=316  Identities=19%  Similarity=0.192  Sum_probs=264.6

Q ss_pred             CCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHH
Q 009756          151 EWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAK  230 (526)
Q Consensus       151 ~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  230 (526)
                      .+++++|+|||||||.||+|++||+++.+.+......++++++|++++.+|++|.+++...+.++..|+++++....  .
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~  113 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A  113 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence            46899999999999999999999999999999999999999999999999999999999888888999988887532  2


Q ss_pred             HHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCcccc
Q 009756          231 AVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVC  310 (526)
Q Consensus       231 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~  310 (526)
                      ..++.++++++|++.++|+++..|++..... .. ++++|.+++||+++++++.+++.++++++++.||+||+++.++..
T Consensus       114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~-~~-l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~  191 (358)
T 4gs5_A          114 NPLAGLDHADFDFVAMVPMQLQSILENSATS-GQ-VDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALK  191 (358)
T ss_dssp             CTTTTCSSCCCSEEEECHHHHHHHHHCTTTG-GG-GGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEE
T ss_pred             cHHHHHHHhCCeEEEcChHHHHHhhcccccc-cc-CCcceEEEEcccCCCchheecccccCceEEeccccccccceeecc
Confidence            2467789999999999999999999876433 33 899999999999999999999998899999999999998766553


Q ss_pred             ccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeee
Q 009756          311 AWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH  390 (526)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~  390 (526)
                      ....           ...+.+|.+.|++ .+.+           +  +.||++++|+..               .+|||+
T Consensus       192 ~~~~-----------~~~g~~~~~~pgv-~~~~-----------~--~~Gel~~~g~~~---------------~~g~~~  231 (358)
T 4gs5_A          192 ALNG-----------PEASELYVFLPGI-QYGV-----------D--ERGCLHISGAVT---------------NGQTVQ  231 (358)
T ss_dssp             ECSS-----------TTCCSCEEECTTC-EEEE-----------C--TTSEEEEESGGG---------------TTCCEE
T ss_pred             cccc-----------cccceeeccCCCe-EEEe-----------c--CcCceEEecccc---------------cCccee
Confidence            3221           1125667777766 2433           1  358999987632               368999


Q ss_pred             cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHH---HcCCCeeeeEEE-EcCCCCCCceeEEEEEecCCCchhh
Q 009756          391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL---YLHPLVLEAAVV-ARPDERWGESPCAFVTLKPEADELD  466 (526)
Q Consensus       391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l---~~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~  466 (526)
                      |||+|++++|| ++++||.||+||++|++|+|.+||++|   .+||.|.+++|+ +.+++..|+.++++|+..... .  
T Consensus       232 TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~-~--  307 (358)
T 4gs5_A          232 TNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE-A--  307 (358)
T ss_dssp             EEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH-H--
T ss_pred             cCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCC-c--
Confidence            99999999988 667799999999999999999999877   467999998876 667777788898888765432 2  


Q ss_pred             hhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          467 KGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       467 ~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                         ..++|+++|+++|+.|++|+.+++++ ||+|++|||+|++|++++.+..
T Consensus       308 ---~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~  356 (358)
T 4gs5_A          308 ---LTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS  356 (358)
T ss_dssp             ---HHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred             ---CHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence               55789999999999999999999988 9999999999999999987754

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=2.9e-48  Score=389.78  Aligned_cols=347  Identities=16%  Similarity=0.174  Sum_probs=272.1

Q ss_pred             ccHHHHHhhCCCCcCCCCCCCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhH---hHhCCcCCcEEEEeccc-ccc
Q 009756          130 IEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA---LIWGMNEGAVFLWTLPM-FHG  205 (526)
Q Consensus       130 ~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~-~~~  205 (526)
                      .+.+++.+..+..   .....++++++++|||||||.||+|+++|+++........   ..+++.+++++++..|+ +|.
T Consensus        73 ~~~~~l~~~~p~~---~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~  149 (443)
T 2y4o_A           73 STKNDLRDNYPFG---LFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFT  149 (443)
T ss_dssp             BCHHHHHTTTTTT---TCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSH
T ss_pred             CcHHHHHhhCCCc---ccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccc
Confidence            4555555443211   1224678999999999999999999999999877655443   35688999999999998 567


Q ss_pred             hhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCC-CCCceeeEeccCCCCCHHHH
Q 009756          206 NGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLL  284 (526)
Q Consensus       206 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~lr~~~~~Ge~l~~~~~  284 (526)
                      .++...+.++..|++++..+..++..+++.++++++|+++++|+++..|++........ .++++|.+++|||++++++.
T Consensus       150 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~  229 (443)
T 2y4o_A          150 GGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALR  229 (443)
T ss_dssp             HHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHH
T ss_pred             cHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHH
Confidence            77777777788888888877789999999999999999999999999998764322222 15789999999999999999


Q ss_pred             HHHh-hcCCeeecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEE
Q 009756          285 FAMS-QKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIV  363 (526)
Q Consensus       285 ~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~  363 (526)
                      +++. .+|+++++.||+||+++.++.......            ....+.+.+++ .++|+|+++|++++.|  +.|||+
T Consensus       230 ~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~------------~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~  294 (443)
T 2y4o_A          230 NEVETRVGIDALDIYGLSEVMGPGVACECVET------------KDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELV  294 (443)
T ss_dssp             HHHHHHHTCEEEEEEEETTTTEEEEEEECTTT------------CCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEE
T ss_pred             HHHHHHhCcCEEeccCchhhcCCeEEeccCCC------------CCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEE
Confidence            9998 459999999999998543222111100            01133344566 6999998889999988  799999


Q ss_pred             EcCccccccccCChhhhhhhhcCCeeecCceeEEcCC-ceE-----EEeccccceeeeCCeeechHHHHHHHHcCCCeee
Q 009756          364 MRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD-NYI-----EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE  437 (526)
Q Consensus       364 v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~-g~~-----~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~  437 (526)
                      ++|.            +...|.++||+|||+|+++++ |++     ++.||.||+||++|++|+|.+||.+|.++|+|.+
T Consensus       295 v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~  362 (443)
T 2y4o_A          295 FTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSG  362 (443)
T ss_dssp             EEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEE
T ss_pred             EeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCc
Confidence            9973            223456789999999999999 986     8999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCCCceeEEEEEecC--CCchhhhhhhHHHHHHHHHhcCCCc-cCCcEEEec--c-ccCCCCccccHHH
Q 009756          438 AAVVARPDERWGESPCAFVTLKP--EADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFA--A-LPKSATGKIQKHL  508 (526)
Q Consensus       438 ~~v~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~~~~~~--~-lP~t~~GKv~r~~  508 (526)
                      ++|++.+++..++.++++|++.+  +...  .....++++++|+++|+.+ .+|..+.++  + ||+|++||++|..
T Consensus       363 ~~vv~~~~~~~~~~~~a~v~~~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~  437 (443)
T 2y4o_A          363 QFQITLSRDGHMDRLDLAVELRSEAAASV--TDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVI  437 (443)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECHHHHTTC--CHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred             cEEEEEecCCCCceEEEEEEECCcccccc--hhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEE
Confidence            99888877766788999999875  2110  0114567888888888876 488877766  4 9999999999864

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=4.2e-48  Score=387.76  Aligned_cols=328  Identities=20%  Similarity=0.224  Sum_probs=259.5

Q ss_pred             CCC-CCeEEEEecCCCCCCccceeecchhHHHHHHhhH---hHhCCcCCcEEEEecccccchhh-HHHHHHHhhcceeee
Q 009756          149 EDE-WQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA---LIWGMNEGAVFLWTLPMFHGNGW-SYTWSLAALCGTSIC  223 (526)
Q Consensus       149 ~~~-~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~g~~~~~  223 (526)
                      ..+ +++++++|||||||.||+|+++|.++.+......   ..+++.+++++++..|+.|..+. ...+.++..|++++.
T Consensus        82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~  161 (436)
T 3qov_A           82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP  161 (436)
T ss_dssp             SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred             CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence            455 8899999999999999999999999877766553   34588999999999998665554 455666777888877


Q ss_pred             ecccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCC-CCCceeeEeccCCCCCHHHHHHHhh-cCCeeecccccc
Q 009756          224 LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLT  301 (526)
Q Consensus       224 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~YG~t  301 (526)
                      .+..++..+++.++++++|+++++|+++..|++........ .++++|.+++|||++++++.+++.+ +|+++++.||+|
T Consensus       162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T  241 (436)
T 3qov_A          162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMT  241 (436)
T ss_dssp             CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEG
T ss_pred             CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcch
Confidence            77889999999999999999999999999998774332221 1689999999999999999999985 499999999999


Q ss_pred             cCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhh
Q 009756          302 ELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE  381 (526)
Q Consensus       302 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~  381 (526)
                      |+++.++.....             .....+.+.+++ .++|+|+++|++++.|  +.|||+++|.            +.
T Consensus       242 E~~~~~~~~~~~-------------~~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~------------~~  293 (436)
T 3qov_A          242 EMNGPGVAFECQ-------------EQNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTL------------DR  293 (436)
T ss_dssp             GGTEEEEEEECT-------------TCSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEES------------SC
T ss_pred             hhcCCeeEEecC-------------CCCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEecc------------Cc
Confidence            996543332211             002244555577 6999998789999988  7999999984            22


Q ss_pred             hhhcCCeeecCceeEEcCCc------e---EEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCcee
Q 009756          382 EAFANGWFHSGDLAVKHPDN------Y---IEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP  452 (526)
Q Consensus       382 ~~~~~g~~~tGD~~~~~~~g------~---~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~  452 (526)
                      ..|.++||+|||+|+++++|      .   +++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+
T Consensus       294 ~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l  373 (436)
T 3qov_A          294 EMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEM  373 (436)
T ss_dssp             CSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEE
T ss_pred             CCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEE
Confidence            34567899999999999998      4   69999999999999999999999999999999999999999888878899


Q ss_pred             EEEEEecCCCchhhhhhhHHHHHHHHHhcCCCc-cCCcEEEecc---ccCCCCccccHH
Q 009756          453 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFAA---LPKSATGKIQKH  507 (526)
Q Consensus       453 ~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~~~~~~~---lP~t~~GKv~r~  507 (526)
                      +++|++. +...+ .....+++.+.++++|+.+ ++|..+.+++   ||+|+ ||++|.
T Consensus       374 ~a~v~~~-~~~~~-~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~  429 (436)
T 3qov_A          374 IVEVELS-DLSTD-NYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV  429 (436)
T ss_dssp             EEEEEEC-TTCCC-CHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred             EEEEEEc-Ccccc-chhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence            9999998 44321 1113567777777777777 7888887764   99999 999885

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=4.4e-48  Score=387.71  Aligned_cols=328  Identities=17%  Similarity=0.155  Sum_probs=267.6

Q ss_pred             CCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhH---hHhCCcCCcEEEEeccc-ccchhhHHHHHHHhhcceeeee
Q 009756          149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA---LIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAALCGTSICL  224 (526)
Q Consensus       149 ~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~~~  224 (526)
                      ..++++++++|||||||.||+|+++|.++........   ..+++++++++++..|+ +|..++...+.++..|++++..
T Consensus        87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  166 (437)
T 2y27_A           87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF  166 (437)
T ss_dssp             SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred             CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence            4678999999999999999999999999877665433   35678999999999998 6777777777778888888877


Q ss_pred             cccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCC-CCCceeeEeccCCCCCHHHHHHHh-hcCCeeeccccccc
Q 009756          225 RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTE  302 (526)
Q Consensus       225 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE  302 (526)
                      +..++..+++.++++++|+++++|+++..|++........ .++++|.+++||+++++++.+.+. .+|+++++.||+||
T Consensus       167 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE  246 (437)
T 2y27_A          167 GGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE  246 (437)
T ss_dssp             CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETT
T ss_pred             CCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchh
Confidence            7789999999999999999999999999998764322222 147899999999999999999997 56999999999999


Q ss_pred             CCCC--ccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhh
Q 009756          303 LTGP--ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN  380 (526)
Q Consensus       303 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~  380 (526)
                      +++.  +..+...              ....+.+.+++ .++|+|+++|++++.|  +.|||+++|.            +
T Consensus       247 ~~g~~~~~~~~~~--------------~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t  297 (437)
T 2y27_A          247 VMGPGVASECVET--------------KDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL------------T  297 (437)
T ss_dssp             TTEEEEEECCTTT--------------CSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------S
T ss_pred             hcCCeeEEecCCC--------------CCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC------------C
Confidence            8543  2222110              01244455666 6999998889999988  7999999873            2


Q ss_pred             hhhhcCCeeecCceeEEcC-CceE-----EEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEE
Q 009756          381 EEAFANGWFHSGDLAVKHP-DNYI-----EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA  454 (526)
Q Consensus       381 ~~~~~~g~~~tGD~~~~~~-~g~~-----~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~  454 (526)
                      ...|.++||+|||+|++++ +|++     ++.||.||+|+++|++|+|.+||++|.++|+|.+++|++.+++..++.+++
T Consensus       298 ~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a  377 (437)
T 2y27_A          298 KEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTL  377 (437)
T ss_dssp             CSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEE
T ss_pred             cCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEE
Confidence            2345678999999999998 6985     899999999999999999999999999999999999888877766788999


Q ss_pred             EEEecCCCchhhhhhhHHHHHHHHHhcCCCc-cCCcEEEec--c-ccCCCCccccHHH
Q 009756          455 FVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFA--A-LPKSATGKIQKHL  508 (526)
Q Consensus       455 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~~~~~~--~-lP~t~~GKv~r~~  508 (526)
                      +|++.++...+  ....++++++|+++|+.+ .+|..+.++  + ||+|+ ||++|..
T Consensus       378 ~v~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~  432 (437)
T 2y27_A          378 NVEPCPETAPD--TAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV  432 (437)
T ss_dssp             EECBCTTTTTC--HHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred             EEEECCCccch--hhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence            99987664311  114577888888888887 588888776  4 99999 9999863

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.97  E-value=1.1e-30  Score=255.48  Aligned_cols=236  Identities=16%  Similarity=0.113  Sum_probs=177.8

Q ss_pred             CCCCCeEEEEecCCCCCCccceeecchhHHHHHHhh---HhHhCCcCCcEEEEeccc-ccchhhHHHHHHHhhcceeeee
Q 009756          149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNG---ALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAALCGTSICL  224 (526)
Q Consensus       149 ~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~~~  224 (526)
                      ..++++++++|||||||.||+|.++|+++.......   ...+++.+++++++..|+ +|..++...+.+...|+ +++.
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~  166 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS  166 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence            467889999999999999999999999998887743   345578899999999999 99999888777777777 6665


Q ss_pred             cccCHH-----------------------HHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCH
Q 009756          225 RQVTAK-----------------------AVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPP  281 (526)
Q Consensus       225 ~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~  281 (526)
                      ..+++.                       .+++.++++++|+++++|+++..|++........ ++++|.+++|||++++
T Consensus       167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~  245 (369)
T 3hgu_A          167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQM-KQSLAQITLGGTELNL  245 (369)
T ss_dssp             CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHH-HHHCSEEEEESSCCCH
T ss_pred             ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccc-cCCeeEEEECCccCCH
Confidence            566766                       7888999999999999999999998874322233 6899999999999999


Q ss_pred             HHHHHHh-hc--CCeeecccccccCCCCccccccCCCCCCCCccccccccccccee------eeecCCceeecCCCCCcc
Q 009756          282 SLLFAMS-QK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVR------TICLDGLDVIDARTNQPV  352 (526)
Q Consensus       282 ~~~~~~~-~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~~v~d~~~g~~~  352 (526)
                      ++++++. +.  ++++++.||+||+++++..+..                .++|.+      .+++ +++|+|+++|+++
T Consensus       246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~----------------~~~G~~~~~~~~~~~~-~v~ivD~~~g~~v  308 (369)
T 3hgu_A          246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLI----------------TSESQQVIYDSFSPFI-TYDVVDSITAQTV  308 (369)
T ss_dssp             HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB----------------CTTCSSCEEECCTTTE-EEEEECTTTCSBC
T ss_pred             HHHHHHHHHhCCCcEEEcccCchhhhcceecccc----------------ccCCCcccccCCCCCe-EEEEECCCCCcCC
Confidence            9999998 55  8999999999999865543210                146777      7888 6999999779999


Q ss_pred             CCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCC--c-------eEEEeccccceeeeCCe
Q 009756          353 PADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD--N-------YIEIKDRLKDVIISGGE  418 (526)
Q Consensus       353 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~--g-------~~~~~GR~~d~i~~~G~  418 (526)
                      +.|  +.|||+|++....            .+ --+|+|||++...+.  |       .+..++|.++..++.|.
T Consensus       309 p~G--~~GEl~vt~l~~~------------~~-l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          309 EYG--ERGNVIVTHLSPW------------AF-YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             CTT--CEEEEEEEEEETT------------EE-EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred             CCC--CceEEEEEEcCcc------------cc-cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence            998  8999999874321            11 124899999988653  2       35677888888887774

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.53  E-value=1.3e-14  Score=113.93  Aligned_cols=96  Identities=20%  Similarity=0.256  Sum_probs=72.1

Q ss_pred             ccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCch--hhhhhhHHHHHHHHHhcCCC
Q 009756          407 DRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE--LDKGKLAEDVSKFCRAKMPS  484 (526)
Q Consensus       407 GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~l~~~l~~~l~~  484 (526)
                      .|.||+|+++|.+++|.+||++|.++|+|.++++++.+++.+++.+.++++..++...  .+..+..+++++.+.+.+  
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~--   78 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI--   78 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHh--
Confidence            4899999999999999999999999999999999999999889999999998876542  222234445555555544  


Q ss_pred             ccCCcEEEecc---ccCCCCccccH
Q 009756          485 YWVPKSVVFAA---LPKSATGKIQK  506 (526)
Q Consensus       485 ~~~p~~~~~~~---lP~t~~GKv~r  506 (526)
                       .++..+.+++   ||+| +||++|
T Consensus        79 -gv~~~v~~v~~~~lPrt-sGKi~R  101 (109)
T 3lax_A           79 -LVTPRVKLVPKGALPKS-EGKAVR  101 (109)
T ss_dssp             -SSCCEEEEECTTCSCCC----CCC
T ss_pred             -CCccceEEEcCCeecCC-CCCcch
Confidence             2444555553   9998 799987

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.88  E-value=3.4e-08  Score=98.98  Aligned_cols=85  Identities=11%  Similarity=0.120  Sum_probs=59.7

Q ss_pred             ceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcC----CceEEEeccccceeeeCCeeechHHHHHHHHcCC
Q 009756          358 TIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP----DNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP  433 (526)
Q Consensus       358 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~----~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~  433 (526)
                      +.+||+++..+   |.|+             |++||+.++..    ..++.+.||.++++.+.|++++..+||+++.+..
T Consensus       385 ~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~  448 (581)
T 4eql_A          385 CTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAK  448 (581)
T ss_dssp             CEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred             ceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHH
Confidence            78999998763   5555             99999999875    4689999999999999999999999999998543


Q ss_pred             --------CeeeeEEEEcCCCCCCceeEEEEEec
Q 009756          434 --------LVLEAAVVARPDERWGESPCAFVTLK  459 (526)
Q Consensus       434 --------~v~~~~v~~~~~~~~~~~~~~~v~~~  459 (526)
                              .|.+..+..... ....+.+.|.++.
T Consensus       449 ~~l~~~g~~l~eft~~~~~~-~~p~Hy~~~wel~  481 (581)
T 4eql_A          449 LVLESSGLDLKDFTSYADTS-TFPGHYVVYLEVD  481 (581)
T ss_dssp             -------------CEEEECS-SSSBEEEEECC--
T ss_pred             HhhhhcCCEEEEEEEecCCC-CCCCeEEEEEEEe
Confidence                    245555543322 2233555566554

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.87  E-value=5.4e-08  Score=97.68  Aligned_cols=90  Identities=14%  Similarity=0.134  Sum_probs=66.7

Q ss_pred             ccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcC----CceEEEeccccceeeeCCeeechHHHH
Q 009756          351 PVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP----DNYIEIKDRLKDVIISGGENISSVEVE  426 (526)
Q Consensus       351 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~----~g~~~~~GR~~d~i~~~G~~v~~~~ie  426 (526)
                      .+..|  +.+||+++..   .|+|+             |++||++++..    ..++.+.||.++++.+.|+++++.+||
T Consensus       392 eVe~G--~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~  453 (609)
T 4b2g_A          392 HVEVG--KEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQ  453 (609)
T ss_dssp             GCCTT--CEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHH
T ss_pred             HcCCC--CeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHH
Confidence            34455  7899999765   36665             99999999873    478999999999999999999999999


Q ss_pred             HHHHc------CCC--eeeeEEEEcCCCCCCceeEEEEEec
Q 009756          427 KVLYL------HPL--VLEAAVVARPDERWGESPCAFVTLK  459 (526)
Q Consensus       427 ~~l~~------~~~--v~~~~v~~~~~~~~~~~~~~~v~~~  459 (526)
                      +++.+      ..+  |.+..+...... ...+.+.|.++.
T Consensus       454 ~av~~a~~~l~~~g~~l~eft~~~d~~~-~p~Hyv~~wEl~  493 (609)
T 4b2g_A          454 KAVDNASKLLREVNTSVVEYTSFADTKT-IPGHYVIYWELL  493 (609)
T ss_dssp             HHHHHHHHGGGGTTEEEEEEEEEEECSS-SSCEEEEEEEEE
T ss_pred             HHHHHHHHhhhccCCeEEEEEEecCCCC-CCCcEEEEEEEe
Confidence            99873      223  567766543322 233566666664

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.72  E-value=3.6e-07  Score=91.34  Aligned_cols=92  Identities=11%  Similarity=0.042  Sum_probs=68.3

Q ss_pred             ccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCC----ceEEEeccccceeeeCCeeechHHHH
Q 009756          351 PVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD----NYIEIKDRLKDVIISGGENISSVEVE  426 (526)
Q Consensus       351 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~----g~~~~~GR~~d~i~~~G~~v~~~~ie  426 (526)
                      .+..|  +.+||+++..+   |.|+             |++||+.++..-    .++.+.||.++++.+.|+++++.+||
T Consensus       387 eve~G--~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~  448 (581)
T 4epl_A          387 QVKIG--EEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQ  448 (581)
T ss_dssp             GCCTT--CEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHH
T ss_pred             HcCCC--CeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHH
Confidence            34445  78999998763   5555             999999998742    57999999999999999999999999


Q ss_pred             HHHHcC--------CCeeeeEEEEcCCCCCCceeEEEEEecCC
Q 009756          427 KVLYLH--------PLVLEAAVVARPDERWGESPCAFVTLKPE  461 (526)
Q Consensus       427 ~~l~~~--------~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  461 (526)
                      .++.+.        -.|.+..+...... ...+.+.|.+....
T Consensus       449 ~al~~a~~~l~~~~~~l~eft~~~d~~~-~p~hyv~~wE~~~~  490 (581)
T 4epl_A          449 LSVESAAKRLSEEKIEVIDFSSYIDVST-DPGHYAIFWEISGE  490 (581)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEEEEEECSS-SSCEEEEEEEESSC
T ss_pred             HHHHHHHHhhcccCCeEEEEEEecCCCC-CCCcEEEEEeecCC
Confidence            998741        24777777663322 23456666676543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=85.59  E-value=2.5  Score=41.10  Aligned_cols=81  Identities=10%  Similarity=0.035  Sum_probs=61.8

Q ss_pred             hhhcccccccCccCCCCCCCCEEEEEcCCc--hhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccchH
Q 009756            8 GIRLTGVAVDSPLLFPSSPSDLVSVIAPNV--PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF   85 (526)
Q Consensus         8 ~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~   85 (526)
                      +..++.. +   ...|+.++|++...+|-+  ...+..+++++..|+..++.+. .+.+.+...+++.++.+++..+...
T Consensus       115 ~~~~~~~-~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~  189 (436)
T 3qov_A          115 ANLVARC-L---YMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTALHAIPSYA  189 (436)
T ss_dssp             HHHHHHH-H---HHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEEECCHHHH
T ss_pred             HHHHHHH-H---HHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEEEECHHHH
Confidence            3344444 4   556899999999998754  3345567888999999998765 4778899999999999999999887


Q ss_pred             HHHHHHHH
Q 009756           86 SLAEEALK   93 (526)
Q Consensus        86 ~~~~~~~~   93 (526)
                      ..+.+...
T Consensus       190 ~~l~~~~~  197 (436)
T 3qov_A          190 IRLAEVFQ  197 (436)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76665544

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=84.69  E-value=1.7  Score=42.24  Aligned_cols=72  Identities=13%  Similarity=0.105  Sum_probs=57.4

Q ss_pred             cCCCCCCCCEEEEEcCCc--hhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccchHHHHHHHH
Q 009756           20 LLFPSSPSDLVSVIAPNV--PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL   92 (526)
Q Consensus        20 ~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~   92 (526)
                      ...|+.++|++...+|..  ...+...++++..|+.+++++. .+.+.+...+++.++.+++..+.....+.+..
T Consensus       127 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~  200 (437)
T 2y27_A          127 RAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEI  200 (437)
T ss_dssp             HHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHH
Confidence            457889999999999863  3334557888999999998765 47889999999999999999998776665543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=83.19  E-value=2  Score=41.83  Aligned_cols=71  Identities=8%  Similarity=0.082  Sum_probs=57.0

Q ss_pred             cCCCCCCCCEEEEEcCCc--hhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccchHHHHHHH
Q 009756           20 LLFPSSPSDLVSVIAPNV--PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEA   91 (526)
Q Consensus        20 ~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~   91 (526)
                      ...|+.++|++...+|-+  ...+...++++..|+.+++++. .+.+.+...+++.++.+++..+.....+.+.
T Consensus       129 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~  201 (443)
T 2y4o_A          129 RAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDE  201 (443)
T ss_dssp             HHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHH
Confidence            457889999999998864  3335567888999999998765 4788899999999999999998877666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	526
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	4e-99
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	4e-94
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	4e-87
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	1e-79
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-67
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	6e-67
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	2e-61

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  310 bits (796), Expect = 4e-99
 Identities = 113/511 (22%), Positives = 193/511 (37%), Gaps = 45/511 (8%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D+V++  P VP    A       GAV + I    +   VA  +  +SS +VI   E  
Sbjct: 127 KGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGV 186

Query: 86  SLAEEALKMMEANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETG 139
                    ++ N +  LK P      H+IV+     D    E       + +   +E  
Sbjct: 187 RAGRSI--PLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEG----RDLWWRDLIEKA 240

Query: 140 DPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNG-ALIWGMNEGAVFLW 198
            PE   +    E   + + YTSG+T  PKGV+ +  G  + +      ++  + G ++  
Sbjct: 241 SPEHQPEAMNAE-DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 299

Query: 199 TLPMFHGNGWSYTWSLAALCGTSICL-----RQVTAKAVYTAIATHGVTHFCAAPVVLNA 253
           T  +    G SY       CG +  +        T   +   +  H V     AP  + A
Sbjct: 300 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRA 359

Query: 254 IANASPED-TILPLTNVVNVNTAGAPPPPSLLFAMSQK----GFRITHTYGLTELTGPAS 308
           +     +       +++  + + G P  P       +K       +  T+  TE  G   
Sbjct: 360 LMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMI 419

Query: 309 VCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC 368
                      P      L A    R        ++D   +   P +G T G +V+  S 
Sbjct: 420 T----------PLPGAIELKAGSATRPFFGVQPALVDNEGH---PQEGATEGNLVITDSW 466

Query: 369 --VMKGYLKNPKANEEAFA---NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSV 423
               +    + +  E+ +       + SGD A +  D Y  I  R+ DV+   G  + + 
Sbjct: 467 PGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTA 526

Query: 424 EVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP 483
           E+E  L  HP + EAAVV  P    G++  A+VTL    +     +L  +V  + R ++ 
Sbjct: 527 EIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE--PSPELYAEVRNWVRKEIG 584

Query: 484 SYWVPKSVVF-AALPKSATGKIQKHLLRAKA 513
               P  + +  +LPK+ +GKI + +LR  A
Sbjct: 585 PLATPDVLHWTDSLPKTRSGKIMRRILRKIA 615

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  294 bits (754), Expect = 4e-94
 Identities = 160/495 (32%), Positives = 228/495 (46%), Gaps = 34/495 (6%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V+ +  N     EA F  P  GAVL++ N RL+   +A+IL+HA   V++ D    
Sbjct: 64  VGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL 123

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
            L E           G+LKT    V+ DE      L Y             E    E A 
Sbjct: 124 PLVEAIR--------GELKTVQHFVVMDEKAPEGYLAY-------------EEALGEEAD 162

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMF 203
                E  +  + YT+GTT  PKGVV SHR   L SL  +L+    ++E  V L  +PMF
Sbjct: 163 PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMF 222

Query: 204 HGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT 262
           H N W   ++   +    +    ++   ++       GVT     P V  A+A+      
Sbjct: 223 HVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG 282

Query: 263 ILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFE 322
              L  +  +   G+  P SL+    + G  +   YGLTE +        K   +SL  E
Sbjct: 283 -HRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 341

Query: 323 TQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 382
            +  L A+ G   I L  L V D    +PVP DGK +GE+ ++G  +  GY  N +A   
Sbjct: 342 EKLTLKAKTG-LPIPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRS 399

Query: 383 AF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 441
           A   +G+F +GD+AV   + Y+EIKDRLKD+I SGGE ISSV++E  L  HP V EAAVV
Sbjct: 400 ALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVV 459

Query: 442 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSA 500
           A P  +W E P A V  + E    +     E      +A    + +P + VF   +P+++
Sbjct: 460 AIPHPKWQERPLAVVVPRGEKPTPE-----ELNEHLLKAGFAKWQLPDAYVFAEEIPRTS 514

Query: 501 TGKIQKHLLRAKAKE 515
            GK  K  LR + K 
Sbjct: 515 AGKFLKRALREQYKN 529

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  279 bits (714), Expect = 4e-87
 Identities = 105/510 (20%), Positives = 179/510 (35%), Gaps = 34/510 (6%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V+V  P VP            GA+ + +    ++  +   ++   S VVI   E  
Sbjct: 115 KGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESN 174

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
              +      +   +  L+    +        +     A            +     +  
Sbjct: 175 RGGKVI--ETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYP 232

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSL-NGALIWGMNEGAVFLWTLPMFH 204
             P D    + L YTSG+T +PKGV  S  G  L +L      +  ++  VF     +  
Sbjct: 233 CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGW 292

Query: 205 GNGWSYTWSLAALCGTSICLRQVT-----AKAVYTAIATHGVTHFCAAPVVLNAIANASP 259
             G +Y      L G +  + + T         +  I  H VT F  AP  L  +  A  
Sbjct: 293 ITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD 352

Query: 260 ED-TILPLTNVVNVNTAGAPPPPSLLFAMSQK----GFRITHTYGLTELTGPASVCAWKP 314
                  L ++  + + G P    +    S+K       I  TY  TE            
Sbjct: 353 SYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG 412

Query: 315 EWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC--VMKG 372
                P           G+  + LD                    G + ++ +     + 
Sbjct: 413 VTPMKPGSASFPF---FGIDAVVLDP-------NTGEELNTSHAEGVLAVKAAWPSFART 462

Query: 373 YLKNPKANEEAFAN---GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
             KN     + + N   G++ +GD A K  D YI I  R+ DV+   G  +S+ E+E  +
Sbjct: 463 IWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAI 522

Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEAD-----ELDKGKLAEDVSKFCRAKMPS 484
              P+V E AVV   D+  G++  AFV LK ++      + +   + + +    R  +  
Sbjct: 523 IEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGP 582

Query: 485 YWVPKSVVF-AALPKSATGKIQKHLLRAKA 513
           +  PK ++    LPK+ +GKI + +LR   
Sbjct: 583 FAAPKLIILVDDLPKTRSGKIMRRILRKIL 612

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  256 bits (655), Expect = 1e-79
 Identities = 109/501 (21%), Positives = 191/501 (38%), Gaps = 41/501 (8%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
            +  + V + N    +    GA   G  +   N   N   +   ++ +   VV V ++  
Sbjct: 71  TNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL 130

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
                  K        KL     I+I D   D +  +       +         + +F  
Sbjct: 131 QKILNVQK--------KLPIIQKIIIMDSKTDYQGFQSMYT--FVTSHLPPGFNEYDFVP 180

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGA---YLMSLNGALIWGMNEGAVFLWTLPM 202
           +  + +     +  +SG+T  PKGV + HR A   +  + +      +      L  +P 
Sbjct: 181 ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPF 240

Query: 203 FHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT 262
            HG G   T          + + +   +    ++  + +      P + +  A +     
Sbjct: 241 HHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS-TLID 299

Query: 263 ILPLTNVVNVNTAGAPPPPSLL--FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLP 320
              L+N+  + + GAP    +    A       I   YGLTE T         PE D  P
Sbjct: 300 KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTS---AILITPEGDDKP 356

Query: 321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
                      G + +      V+D  T + +  +    GE+ +RG  +M GY+ NP+A 
Sbjct: 357 --------GAVG-KVVPFFEAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEAT 405

Query: 381 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
                 +GW HSGD+A    D +  I DRLK +I   G  ++  E+E +L  HP + +A 
Sbjct: 406 NALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAG 465

Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVF-AALP 497
           V   PD+  GE P A V L+      +     +++  +  +++ +   +   VVF   +P
Sbjct: 466 VAGLPDDDAGELPAAVVVLEHGKTMTE-----KEIVDYVASQVTTAKKLRGGVVFVDEVP 520

Query: 498 KSATGKIQKHLLR---AKAKE 515
           K  TGK+    +R    KAK+
Sbjct: 521 KGLTGKLDARKIREILIKAKK 541

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  224 bits (572), Expect = 1e-67
 Identities = 80/497 (16%), Positives = 155/497 (31%), Gaps = 70/497 (14%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
              LV ++      ++        AG     I+I      + +IL  + + +++  +   
Sbjct: 72  KDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV 131

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
            L                                            +E+           
Sbjct: 132 HLIHNI--------------------------------QFNGQVEIFEEDTIKIREGTNL 159

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
             P        + YTSGTT +PKG ++ H+G   + +       + E         +   
Sbjct: 160 HVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFD 219

Query: 206 NGWSYTWSLAALCGTSICLRQVTAK---AVYTAIATHGVTHFCAAPVVLNAIANASPEDT 262
                 +       +   + + T          I    +T     P  +  +        
Sbjct: 220 ASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE----- 274

Query: 263 ILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFE 322
              + ++  + TAG+   PSL+    ++     + YG TE T  A+      E       
Sbjct: 275 --RILSIQTLITAGSATSPSLVNKW-KEKVTYINAYGPTETTICATTWVATKETIG---- 327

Query: 323 TQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 382
                ++      I    + ++D    Q         GE+ + G  + +GY K P+   +
Sbjct: 328 -----HSVPIGAPIQNTQIYIVDE-NLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQ 379

Query: 383 AFAN-------GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLV 435
            F +         + +GD A    D  IE   R+ + +   G  +   EVE +L  H  +
Sbjct: 380 KFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYI 439

Query: 436 LEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-A 494
            E AV    D +     CA+   +            E + +F   ++P+Y +P   +   
Sbjct: 440 SETAVSVHKDHQEQPYLCAYFVSEKHIPL-------EQLRQFSSEELPTYMIPSYFIQLD 492

Query: 495 ALPKSATGKIQKHLLRA 511
            +P ++ GKI +  L  
Sbjct: 493 KMPLTSNGKIDRKQLPE 509

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  222 bits (566), Expect = 6e-67
 Identities = 116/494 (23%), Positives = 194/494 (39%), Gaps = 52/494 (10%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
           P   V+V+APN   +  A       GAV   +N RL +  +A ++        ++     
Sbjct: 53  PQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIA---- 108

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
            +  +    +  +  G      +I +GD   D +   Y                      
Sbjct: 109 -VGRQVADAIFQSGSG----ARIIFLGDLVRDGEPYSYG-----------------PPIE 146

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWTLPMF 203
            P  +  Q   + YTSGTT  PK  ++  R   + ++ ++  +        V L  +P++
Sbjct: 147 DPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLY 206

Query: 204 -HGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT 262
                ++   +  AL GT + + +         +    VT   A P  L+A+A A+    
Sbjct: 207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG 266

Query: 263 I-LPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLP 320
             L L ++ +V  AGA  P ++L  + Q       + YG TE      +   K   +   
Sbjct: 267 SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE--- 323

Query: 321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
                             +   V        + A+G+    IV        GYL  P+A 
Sbjct: 324 -----------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQAT 372

Query: 381 EEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 440
            E   +GW+ + D+AV  P+  + I  R+ D+IISGGENI   E+E+VL   P V E  V
Sbjct: 373 AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVV 432

Query: 441 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVF-AALPK 498
           +   D+RWG+S  A V  +     L     A+ +  FCR+ ++  +  PK       LPK
Sbjct: 433 IGLADQRWGQSVTACVVPRLGE-TLS----ADALDTFCRSSELADFKRPKRYFILDQLPK 487

Query: 499 SATGKIQKHLLRAK 512
           +A  K+ +  L  +
Sbjct: 488 NALNKVLRRQLVQQ 501

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  208 bits (530), Expect = 2e-61
 Identities = 104/495 (21%), Positives = 173/495 (34%), Gaps = 42/495 (8%)

Query: 26  PSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85
             D V V  PN+   +E  F     GA+         ++ + +    A +A  I+   + 
Sbjct: 74  QKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYS 133

Query: 86  SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAW 145
                +L     +    LK                    +  G  E    LE    E   
Sbjct: 134 GFDYRSLARQVQSKLPTLKNI------------------IVAGEAEEFLPLEDLHTEPVK 175

Query: 146 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 205
            P         L  + G+T   K +  +H            +  ++   V+L  LPM H 
Sbjct: 176 LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHN 235

Query: 206 NGWSYTWSLAALCG--TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI 263
              S    L  L      +     +    +  I    VT     P +     +A+     
Sbjct: 236 YPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD 295

Query: 264 LPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFET 323
              +  V           +     +  G  +   +G+ E     +      E        
Sbjct: 296 DLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIV----- 350

Query: 324 QARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEA 383
                  QG      D   V D   ++ V       G ++ RG   ++GY K  + N  +
Sbjct: 351 -----NTQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAAS 402

Query: 384 F-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVA 442
           F  +G++ +GD+     D YI ++ R KD I  GGE +++ EVE  L  HP V +AA+V+
Sbjct: 403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVS 462

Query: 443 RPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVF-AALPKSA 500
            PD+  GE  C F+  + EA +      A ++  F R + + +Y +P  V F  + P++ 
Sbjct: 463 MPDQFLGERSCVFIIPRDEAPK------AAELKAFLRERGLAAYKIPDRVEFVESFPQTG 516

Query: 501 TGKIQKHLLRAKAKE 515
            GK+ K  LR    E
Sbjct: 517 VGKVSKKALREAISE 531

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	526
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	86.32

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.4e-73  Score=594.87  Aligned_cols=486  Identities=22%  Similarity=0.277  Sum_probs=401.6

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   +++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus       106 Y~eL~~~v~~~A~~-L---~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~  181 (643)
T d1pg4a_         106 YRELHRDVCRFANT-L---LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVIT  181 (643)
T ss_dssp             HHHHHHHHHHHHHH-H---HHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccch---------HHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCC
Q 009756           81 DQEF---------FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDE  151 (526)
Q Consensus        81 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  151 (526)
                      +++.         .......+....     ......++.+........    ........+.+..........+ ...++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~  251 (643)
T d1pg4a_         182 ADEGVRAGRSIPLKKNVDDALKNPN-----VTSVEHVIVLKRTGSDID----WQEGRDLWWRDLIEKASPEHQP-EAMNA  251 (643)
T ss_dssp             ESEEEETTEEEESHHHHHHHHTSTT-----CCSCCEEEEECSSCCCCC----CCBTTEEEHHHHHTTSCSCCCC-CCEET
T ss_pred             cchhhhhccccchhhhHHHHHhccc-----cccceEEEEeccCCcccc----cccccchhhhhhhcccCcccCC-CCCCC
Confidence            7642         223333322211     125677777776543211    0111223444444444333322 33578


Q ss_pred             CCeEEEEecCCCCCCccceeecchhHHHHHHh-hHhHhCCcCCcEEEEecccccchhhHHH-HHHHhhcceeeeecc---
Q 009756          152 WQSIALGYTSGTTASPKGVVVSHRGAYLMSLN-GALIWGMNEGAVFLWTLPMFHGNGWSYT-WSLAALCGTSICLRQ---  226 (526)
Q Consensus       152 ~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~g~~~~~~~~---  226 (526)
                      +|+++|+|||||||.||||+++|.+++..... ....+++.++|++++.+|++|++++... +.+++.|+++++++.   
T Consensus       252 dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~  331 (643)
T d1pg4a_         252 EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN  331 (643)
T ss_dssp             TSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTT
T ss_pred             CCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCC
Confidence            89999999999999999999999997655444 4556789999999999999999997654 456677888887643   


Q ss_pred             -cCHHHHHHHHHhcCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHh-hc---CCeeecccc
Q 009756          227 -VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMS-QK---GFRITHTYG  299 (526)
Q Consensus       227 -~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~---~~~i~~~YG  299 (526)
                       +++..+++.++++++|+++++|++++.|++....  ...+ +++||.++++|+++++++.+++. .+   ++++++.||
T Consensus       332 ~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~d-l~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG  410 (643)
T d1pg4a_         332 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD-RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW  410 (643)
T ss_dssp             SSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCC-CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBC
T ss_pred             CCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccC-CCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeec
Confidence             4789999999999999999999999999877532  2334 89999999999999999999987 43   578999999


Q ss_pred             cccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcC--ccccccccCCh
Q 009756          300 LTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG--SCVMKGYLKNP  377 (526)
Q Consensus       300 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~--~~~~~gy~~~~  377 (526)
                      +||++++++.....         ......+++|.|++++ +++|+|++ |++++.+  +.|||+++|  |+++.||++++
T Consensus       411 ~TE~g~~~~~~~~~---------~~~~~~gs~G~p~~g~-~v~ivd~~-g~~~~~g--~~Gel~v~~~~p~~~~~~~~~~  477 (643)
T d1pg4a_         411 QTETGGFMITPLPG---------AIELKAGSATRPFFGV-QPALVDNE-GHPQEGA--TEGNLVITDSWPGQARTLFGDH  477 (643)
T ss_dssp             CGGGSSCSBCCCTT---------TCCBCTTCCBSBCTTC-CEEEECTT-CCBCCSS--EEEEEEECSCCTTCCCEETTCH
T ss_pred             hhhccceEEecCCC---------ccCCCCCccccccCCC-EEEEECCC-CCCCCCC--ceEEEEEecCCCcccccccCCh
Confidence            99998766543211         1122347899999999 69999987 9999887  899999999  46889999998


Q ss_pred             hhhhhhh---cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEE
Q 009756          378 KANEEAF---ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA  454 (526)
Q Consensus       378 ~~~~~~~---~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~  454 (526)
                      +.+...+   .+|||+|||+|++++||+++++||+||+||++|++|+|.+||++|.+||.|.+|+|++.+++..|+.+++
T Consensus       478 ~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a  557 (643)
T d1pg4a_         478 ERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA  557 (643)
T ss_dssp             HHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEE
T ss_pred             hhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEE
Confidence            8777665   3889999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          455 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       455 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      ||+++++....  .+..++|+++++++|+.|++|+.+++++ ||+|++||++|+.||+++...
T Consensus       558 ~Vv~~~~~~~~--~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~  618 (643)
T d1pg4a_         558 YVTLNHGEEPS--PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD  618 (643)
T ss_dssp             EEEECTTCCCC--HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred             EEEECCCCCCC--HHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcCC
Confidence            99998876532  2256789999999999999999999998 999999999999999998763

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=5.1e-71  Score=569.17  Aligned_cols=477  Identities=21%  Similarity=0.304  Sum_probs=398.4

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||++++.++|++ |   +++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|+
T Consensus        50 y~el~~~~~~lA~~-L---~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~  125 (541)
T d1lcia_          50 YAEYFEMSVRLAEA-M---KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV  125 (541)
T ss_dssp             HHHHHHHHHHHHHH-H---HHHTCCTTCEEEEECSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEee
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhC------CCCcCCCCCCCCCCe
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETG------DPEFAWKPPEDEWQS  154 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~  154 (526)
                      +++....+.+.....+       ....++.++.....         .+..++.+.....      .....+.....++++
T Consensus       126 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (541)
T d1lcia_         126 SKKGLQKILNVQKKLP-------IIQKIIIMDSKTDY---------QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI  189 (541)
T ss_dssp             CGGGHHHHHHHHHHCT-------TCCEEEETTCSSCB---------TTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSE
T ss_pred             eccccccchhcccccc-------ccceeeeecCCccc---------cccchhhhhhhhhccccccccccCccccCCCCce
Confidence            9999988888888777       56777777654321         2223333333221      111222233567889


Q ss_pred             EEEEecCCCCCCccceeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHH
Q 009756          155 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKA  231 (526)
Q Consensus       155 a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  231 (526)
                      ++++|||||||.||+|+++|++++.........   ....++++++..+|++|..++...+.....++..+.....+...
T Consensus       190 a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (541)
T d1lcia_         190 ALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEEL  269 (541)
T ss_dssp             EEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHH
T ss_pred             EEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccccccccccccccccccccccccccccch
Confidence            999999999999999999999988776655443   35678999999999999999988888888888888888889999


Q ss_pred             HHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcC-CeeecccccccCCCCccc
Q 009756          232 VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKG-FRITHTYGLTELTGPASV  309 (526)
Q Consensus       232 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~-~~i~~~YG~tE~~~~~~~  309 (526)
                      ....+..+++|.++.+|..+..+.......... +++++.+++||++++++..+.+. .++ ..+++.||+||+++.++.
T Consensus       270 ~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~-~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  348 (541)
T d1lcia_         270 FLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYD-LSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI  348 (541)
T ss_dssp             HHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSC-CTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEE
T ss_pred             hHHHHhhhhccccccCccccccccccccccccc-cccceEEEecccccccccccccccccCCceeeecCCccccCceEEe
Confidence            999999999999999999999999887777666 89999999999999999999988 444 568999999999887766


Q ss_pred             cccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCe
Q 009756          310 CAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGW  388 (526)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~  388 (526)
                      .....           ...+++|+|+|++ +++|+|+++|++++.|  +.|||+|+|++++.||++++..+...+. +||
T Consensus       349 ~~~~~-----------~~~~svG~p~~~~-~~~i~d~d~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~  414 (541)
T d1lcia_         349 TPEGD-----------DKPGAVGKVVPFF-EAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGW  414 (541)
T ss_dssp             CCCC--------------CCCCBEECTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTBHHHHHHHBCTTSC
T ss_pred             cCccc-----------CCCCccccccCCC-EEEEEECCCCcCCCCC--CeEEEEEccCccCCeeCCChhhhhhcccCCcc
Confidence            43221           2236899999999 6999999999999998  7999999999999999999888877775 789


Q ss_pred             eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756          389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG  468 (526)
Q Consensus       389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  468 (526)
                      |+|||+|+++++|++++.||.+|+||++|++|+|.+||++|.++|+|.+|+|++.+++..|+.++++|+++++...    
T Consensus       415 ~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~----  490 (541)
T d1lcia_         415 LHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM----  490 (541)
T ss_dssp             EEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC----
T ss_pred             ccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCC----
Confidence            9999999999999999999999999999999999999999999999999999999988889999999999877655    


Q ss_pred             hhHHHHHHHHHhcCCCcc-CCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756          469 KLAEDVSKFCRAKMPSYW-VPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG  517 (526)
Q Consensus       469 ~~~~~l~~~l~~~l~~~~-~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~  517 (526)
                       ..++++++++++++++. +|..+++++ ||+|++|||+|++|++++.+.+
T Consensus       491 -~~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~  540 (541)
T d1lcia_         491 -TEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK  540 (541)
T ss_dssp             -CHHHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHHT
T ss_pred             -CHHHHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHHhC
Confidence             56789999999998765 799999888 9999999999999999998764

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.5e-72  Score=576.62  Aligned_cols=482  Identities=33%  Similarity=0.485  Sum_probs=376.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||+++++++|++ |   .+.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++|+.++++++++
T Consensus        43 y~el~~~~~~~A~~-L---~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~  118 (534)
T d1v25a_          43 YAEVYQRARRLMGG-L---RALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLF  118 (534)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHCCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccc
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +...............       .....+........          ........    ...........++++++++||
T Consensus       119 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----------~~~~~~~~----~~~~~~~~~~~~~~~a~i~~T  177 (534)
T d1v25a_         119 DPNLLPLVEAIRGELK-------TVQHFVVMDEKAPE----------GYLAYEEA----LGEEADPVRVPERAACGMAYT  177 (534)
T ss_dssp             CGGGHHHHHHHGGGCS-------SCCEEEESSSCCCT----------TCEEHHHH----CCSCCCCCCCCTTSEEEEEEE
T ss_pred             cchhhhhHHHHhhccc-------ccceeEEeeccccc----------cccccccc----ccccccccccccCCcEEEEEe
Confidence            9998888777765554       44555544443221          11111111    111111223567889999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhH--hHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-cccCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGA--LIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~  237 (526)
                      |||||.||+|.++|.+++.......  ..+....++++++.+|++|..++...+..+..|++.++. +.+++..+...++
T Consensus       178 SGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~  257 (534)
T d1v25a_         178 TGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFD  257 (534)
T ss_dssp             CSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHH
T ss_pred             cCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeeeccccccccccchhhh
Confidence            9999999999999999876654443  345677899999999999999999999999988888887 4578999999999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD  317 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~  317 (526)
                      ++++|++.++|.++..+.......... ++++|.+++||++++++..+++++.+.++++.||+||++++++.........
T Consensus       258 ~~~vt~~~~~p~~~~~~~~~~~~~~~~-~~~lr~~~~gG~~~~~~~~~~~~~~~~~i~~~yG~te~~~~~~~~~~~~~~~  336 (534)
T d1v25a_         258 GEGVTFTAGVPTVWLALADYLESTGHR-LKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLE  336 (534)
T ss_dssp             HTTCCEEEECHHHHHHHHHHHHHHTCC-CSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEECCCCGGGT
T ss_pred             hccccccccCchhhhhhhhhhcccccc-ccceeEEEEecCCCCHHHHHHHHHhCCeeeeeccccccccceeecccCcccc
Confidence            999999999999999998875555555 8999999999999999999999999999999999999998887654443333


Q ss_pred             CCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh-cCCeeecCceeE
Q 009756          318 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAV  396 (526)
Q Consensus       318 ~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~  396 (526)
                      ............++|.|++++ +++|+|++ |+.++.+.++.|||+++|++++.||+++++.+...| .+|||+|||+|+
T Consensus       337 ~~~~~~~~~~~~~~G~p~~g~-~~~i~d~~-~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~  414 (534)
T d1v25a_         337 SLSEEEKLTLKAKTGLPIPLV-RLRVADEE-GRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAV  414 (534)
T ss_dssp             TSCHHHHHHHHTSCBEECTTC-EEEEECTT-SCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEE
T ss_pred             ccCccccccccccceeccCCc-EEEEECCC-CCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeE
Confidence            333333444557899999999 69999987 899988777899999999999999999999998887 588999999999


Q ss_pred             EcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHH
Q 009756          397 KHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK  476 (526)
Q Consensus       397 ~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  476 (526)
                      +++||.+++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|+.+.+...     ..+.++.
T Consensus       415 ~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~-----~~~~~~~  489 (534)
T d1v25a_         415 WDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPT-----PEELNEH  489 (534)
T ss_dssp             ECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--------------------
T ss_pred             ECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCCC-----HHHHHHH
Confidence            99999999999999999999999999999999999999999999999999989999999988765433     2233444


Q ss_pred             HHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          477 FCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       477 ~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                      ++++.|+.|++|..+++++ ||+|++|||+|++||++|.+
T Consensus       490 ~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~  529 (534)
T d1v25a_         490 LLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN  529 (534)
T ss_dssp             ----CCCTTTSCSBC--------------CCTTHHHHSTT
T ss_pred             HHHhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHh
Confidence            5788999999999999888 99999999999999998864

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-70  Score=572.35  Aligned_cols=490  Identities=21%  Similarity=0.266  Sum_probs=387.7

Q ss_pred             CccchhhhhhcccccccCcc-CCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPL-LFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI   79 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~-~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi   79 (526)
                      |+||.++++++|++ |   + ++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++++++++++
T Consensus        93 y~eL~~~v~~~A~~-L---~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~  168 (640)
T d1ry2a_          93 YKELLEEVCQVAQV-L---TYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVI  168 (640)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccc
Confidence            78999999999999 8   7 68999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccchH---------HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCC
Q 009756           80 VDQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPED  150 (526)
Q Consensus        80 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  150 (526)
                      ++....         ..+........       .......+.........   ........+........ ......+.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~  237 (640)
T d1ry2a_         169 TTDESNRGGKVIETKRIVDDALRETP-------GVRHVLVYRKTNNPSVA---FHAPRDLDWATEKKKYK-TYYPCTPVD  237 (640)
T ss_dssp             EESBCCBTTBCCBHHHHHHHHTTSCT-------TCCEEEEECSSCCSSCC---CCSSSEEEHHHHHTTSC-SCCCCCCEE
T ss_pred             cchhhhhccchhhhHHHHHhhhhhhc-------ccceeeeeccccccccc---ccccccccccccccccc-cccccCCcc
Confidence            986432         22222222222       23444444332211000   00011112222222222 222223356


Q ss_pred             CCCeEEEEecCCCCCCccceeecchhHHHHHHhhH-hHhCCcCCcEEEEecccccchhhHHHH-HHHhhcceeeeecc--
Q 009756          151 EWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA-LIWGMNEGAVFLWTLPMFHGNGWSYTW-SLAALCGTSICLRQ--  226 (526)
Q Consensus       151 ~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~g~~~~~~~~--  226 (526)
                      ++|+++|+|||||||.||||+++|.+++....... ..+.+.++|++++.+|++|..++.+.+ .++..|++++++..  
T Consensus       238 ~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~  317 (640)
T d1ry2a_         238 SEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTP  317 (640)
T ss_dssp             TTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCT
T ss_pred             cccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCC
Confidence            78999999999999999999999999777655544 456889999999999999999876544 45666777777643  


Q ss_pred             --cCHHHHHHHHHhcCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHh-hc---CCeeeccc
Q 009756          227 --VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMS-QK---GFRITHTY  298 (526)
Q Consensus       227 --~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~---~~~i~~~Y  298 (526)
                        .++..+++.++++++|+++++|++++.|.+....  ...+ +++||.+++||+++++++.+++. .+   ++++++.|
T Consensus       318 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~y  396 (640)
T d1ry2a_         318 AYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHS-LKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTY  396 (640)
T ss_dssp             TSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCC-CTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECB
T ss_pred             CCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCC-CCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeee
Confidence              3789999999999999999999999999877543  2334 89999999999999999999998 44   35799999


Q ss_pred             ccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcC--ccccccccCC
Q 009756          299 GLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG--SCVMKGYLKN  376 (526)
Q Consensus       299 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~--~~~~~gy~~~  376 (526)
                      |+||++...........        .....+++|.|++++ +++|+|++++..++..+ ..|||++++  |+++.||+++
T Consensus       397 g~te~~~~~~~~~~~~~--------~~~~~gs~G~p~~g~-~~~i~d~~~~~~~~~~~-~~Gel~i~~~~p~~~~gy~~~  466 (640)
T d1ry2a_         397 WQTESGSHLVTPLAGGV--------TPMKPGSASFPFFGI-DAVVLDPNTGEELNTSH-AEGVLAVKAAWPSFARTIWKN  466 (640)
T ss_dssp             CCTTTCSCSEECCTTTC--------CCCCTTCCCEECTTC-CEEEECSSSTTCEECSS-CEEEEEESSCCTTSCCEETTC
T ss_pred             cccccccccccccCCCc--------CCCCCcccccccCCc-eEEEEeCCCCcccCCCC-ceEEEEEEecCCCcccccccC
Confidence            99999876654332221        122347899999999 69999998666555443 679999998  5899999999


Q ss_pred             hhhhhhhhc---CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeE
Q 009756          377 PKANEEAFA---NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC  453 (526)
Q Consensus       377 ~~~~~~~~~---~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~  453 (526)
                      ++.+...|.   +|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||.|.+|+|++.+++..|+.++
T Consensus       467 ~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~  546 (640)
T d1ry2a_         467 HDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVA  546 (640)
T ss_dssp             HHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCE
T ss_pred             HHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEE
Confidence            999888873   58999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCch-----hhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756          454 AFVTLKPEADE-----LDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM  516 (526)
Q Consensus       454 ~~v~~~~~~~~-----~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~  516 (526)
                      |+|+++++...     +...+..+++.++++++|++|++|+.+++++ ||+|++|||+|++||+++...
T Consensus       547 a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~  615 (640)
T d1ry2a_         547 AFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE  615 (640)
T ss_dssp             EEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred             EEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhCC
Confidence            99999876432     1112356789999999999999999999998 999999999999999988653

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=2.9e-65  Score=522.57  Aligned_cols=448  Identities=18%  Similarity=0.239  Sum_probs=377.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   +++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        51 y~eL~~~v~~lA~~-L---~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~  126 (514)
T d1amua_          51 YHELNVKANQLARI-F---IEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLT  126 (514)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEE
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +......+...    .        ...........                    ............+..++++++|+||
T Consensus       127 ~~~~~~~~~~~----~--------~~~~~~~~~~~--------------------~~~~~~~~~~~~p~~~~d~a~i~~T  174 (514)
T d1amua_         127 QKHLVHLIHNI----Q--------FNGQVEIFEED--------------------TIKIREGTNLHVPSKSTDLAYVIYT  174 (514)
T ss_dssp             CGGGHHHHTTS----C--------CCSEEEECCCS--------------------TTTTSCCSCCCCCCCTTSEEEEEEE
T ss_pred             ehhhhhhhhhh----c--------ccccccccccc--------------------cccccccccCCCCCCcccceEEEEc
Confidence            98766543321    1        11111111110                    0011112222234577899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc---cCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~  237 (526)
                      |||||.||+|.+||.++..........+.....+++++..|++|..++...+..+..+++.+....   .+....++.+.
T Consensus       175 SGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  254 (514)
T d1amua_         175 SGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYIN  254 (514)
T ss_dssp             C-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHH
T ss_pred             cCCCCCcccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccchhhhhhhhh
Confidence            999999999999999999999999999999999999999999999999988888888888887743   56678899999


Q ss_pred             hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCC
Q 009756          238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD  317 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~  317 (526)
                      .+.++.+...|......      .... +.+++.++++|+++++++.+++.+ ++.+++.||+||++++++.........
T Consensus       255 ~~~~~~~~~~~~~~~~~------~~~~-~~~l~~~~~~G~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~  326 (514)
T d1amua_         255 QKEITVITLPPTYVVHL------DPER-ILSIQTLITAGSATSPSLVNKWKE-KVTYINAYGPTETTICATTWVATKETI  326 (514)
T ss_dssp             HTTCCEEEECHHHHTTS------CTTT-CCSCSEEEEESSCCCHHHHHHHTT-TSEEEEEECCGGGSSCSEEEECCSSCC
T ss_pred             hhhcccccceeeecccc------cccc-cccccEEEEecccCCHHHhhhhcc-ceeEEEeeccccCceeeeecccccccc
Confidence            99999999999764432      2223 789999999999999999988776 689999999999998776544332211


Q ss_pred             CCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-------CCeee
Q 009756          318 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-------NGWFH  390 (526)
Q Consensus       318 ~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~  390 (526)
                              ....+.|.+.+.. .+.+.|++ +++++.|  +.|||+|+|+.++.||++++..+...|.       +|||+
T Consensus       327 --------~~~~~~~~~~~~~-~v~~~d~~-~~~~~~g--~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~  394 (514)
T d1amua_         327 --------GHSVPIGAPIQNT-QIYIVDEN-LQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYK  394 (514)
T ss_dssp             --------CSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEE
T ss_pred             --------Ccccccccceeee-eEeeeccc-ceecCCC--CeeEEEEccCcccccccccccccceeeEeccccCCCceEE
Confidence                    1225677888888 58888877 9999998  8999999999999999999999888873       67999


Q ss_pred             cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhh
Q 009756          391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL  470 (526)
Q Consensus       391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  470 (526)
                      |||+|++++||++++.||.+|+|+.+|++|+|.+||++|.++|+|.+|+|++.++...++.++|+++.+++.       .
T Consensus       395 TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~-------~  467 (514)
T d1amua_         395 TGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI-------P  467 (514)
T ss_dssp             EEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC-------C
T ss_pred             ECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCC-------C
Confidence            999999999999999999999999999999999999999999999999999999998899999999987764       3


Q ss_pred             HHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHH
Q 009756          471 AEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA  511 (526)
Q Consensus       471 ~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~  511 (526)
                      .++|+++++++|+.|++|..+++++ ||+|++|||+|++||+
T Consensus       468 ~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~  509 (514)
T d1amua_         468 LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE  509 (514)
T ss_dssp             HHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred             HHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence            4788999999999999999999998 9999999999999876

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.3e-63  Score=513.17  Aligned_cols=468  Identities=22%  Similarity=0.318  Sum_probs=387.2

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||+++++++|++ |   +++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        53 y~el~~~v~~~A~~-L---~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~  128 (536)
T d1mdba_          53 YRELDTRADRLAAG-F---QKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYII  128 (536)
T ss_dssp             HHHHHHHHHHHHHH-H---HHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEec
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHH-----HHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeE
Q 009756           81 DQEFFSL-----AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI  155 (526)
Q Consensus        81 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a  155 (526)
                      ++.....     .........       .....+......            ...+++++    ........+..++|++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------~~~~~~~~----~~~~~~~~~~~~~d~a  185 (536)
T d1mdba_         129 PDAYSGFDYRSLARQVQSKLP-------TLKNIIVAGEAE------------EFLPLEDL----HTEPVKLPEVKSSDVA  185 (536)
T ss_dssp             ESEETTEEHHHHHHHHHHHCT-------TCCCEEEESCCT------------TSEEGGGC----CCCCCCCCCCCTTSEE
T ss_pred             cchhhhhhhhhhhhhhhhccc-------cccceeeeeccc------------cccchhhc----ccCCcCCCccCccchH
Confidence            8644321     111222222       233333332221            11222221    1111122335788999


Q ss_pred             EEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH--HHHHHhhcceeeeecccCHHHHH
Q 009756          156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY--TWSLAALCGTSICLRQVTAKAVY  233 (526)
Q Consensus       156 ~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~  233 (526)
                      +|+|||||||.||+|++||.++.+.+......+.+.+++++++..|++|..++..  .......|.+.+..+.+++..++
T Consensus       186 ~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~  265 (536)
T d1mdba_         186 FLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAF  265 (536)
T ss_dssp             EEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHH
T ss_pred             HhhhcccccccceecccccccccccccccccccccccccccccccccccccceeeccccccccccccccccCCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999988753  33333334555555678999999


Q ss_pred             HHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcccccc
Q 009756          234 TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAW  312 (526)
Q Consensus       234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~  312 (526)
                      ..+++++++.+..+|..+..+.......... +++++.+++||+++++...+++. .++......|+.+|.+........
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (536)
T d1mdba_         266 PLIEREKVTITALVPPLAMVWMDAASSRRDD-LSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDD  344 (536)
T ss_dssp             HHHHHHTCSEEEECHHHHHHHHHHHHHCCCC-CTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTS
T ss_pred             HHHhhhccccccccchhhhhhhhhccccccc-cCcceeEEEeccccccccccchhhccCceeeecccccccccccccccc
Confidence            9999999999999999999888776555555 88999999999999999999988 569999999999988654443221


Q ss_pred             CCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeec
Q 009756          313 KPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHS  391 (526)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~t  391 (526)
                                ........+|.|+++.. ..+++.++|+.++.+  +.|||+++|+.++.||++++..+...+. +|||+|
T Consensus       345 ----------~~~~~~~~~g~p~~~~~-~~~v~~~~g~~~~~~--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~t  411 (536)
T d1mdba_         345 ----------PEEIIVNTQGKPMSPYD-ESRVWDDHDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT  411 (536)
T ss_dssp             ----------CHHHHHHCCCEESSTTC-EEEEECTTSCBCCTT--CCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEE
T ss_pred             ----------ccccccCCcccCCCCcc-eEEEEcCCCCeeccc--ccceeecCCCccccccccccccccccccccCcccc
Confidence                      12233478899988774 555555669999988  8999999999999999999988887775 689999


Q ss_pred             CceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhH
Q 009756          392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLA  471 (526)
Q Consensus       392 GD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  471 (526)
                      ||++++++||++++.||.||+||++|++|+|.+||++|.++|+|.+|+|++.+++..|+.++|+|+..++..      ..
T Consensus       412 GD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~------~~  485 (536)
T d1mdba_         412 GDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAP------KA  485 (536)
T ss_dssp             EEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCC------CH
T ss_pred             CccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCC------CH
Confidence            999999999999999999999999999999999999999999999999999998888899999999877643      35


Q ss_pred             HHHHHHHHhc-CCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756          472 EDVSKFCRAK-MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE  515 (526)
Q Consensus       472 ~~l~~~l~~~-l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~  515 (526)
                      ++++++++++ |+.|++|+.+++++ ||+|++|||+|++|++++.+
T Consensus       486 ~~l~~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  531 (536)
T d1mdba_         486 AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE  531 (536)
T ss_dssp             HHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHH
Confidence            7788889875 99999999999988 99999999999999999975

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=1.7e-60  Score=485.78  Aligned_cols=462  Identities=26%  Similarity=0.351  Sum_probs=369.3

Q ss_pred             CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756            1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV   80 (526)
Q Consensus         1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~   80 (526)
                      |+||.++++++|++ |   +++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus        32 y~el~~~~~~~a~~-L---~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~  107 (503)
T d3cw9a1          32 HAELRARVEAVAAR-L---HADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI  107 (503)
T ss_dssp             HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHHHH-H---HHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEe
Confidence            78999999999999 9   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756           81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT  160 (526)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T  160 (526)
                      +..... ........        ....++.+++......                 .............+++++++++||
T Consensus       108 ~~~~~~-~~~~~~~~--------~~~~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~a~i~~T  161 (503)
T d3cw9a1         108 AVGRQV-ADAIFQSG--------SGARIIFLGDLVRDGE-----------------PYSYGPPIEDPQREPAQPAFIFYT  161 (503)
T ss_dssp             SSCHHH-HHHHHHTT--------CCCEEEEHHHHEETTE-----------------ECCCSCCCCCCCCCTTSEEEEEEE
T ss_pred             ecchHH-HHHHhhhc--------cccccccchhhhhhhc-----------------ccccCCccccccchhhhhhhhccc
Confidence            876432 22222221        3455555433211000                 000111111223578899999999


Q ss_pred             CCCCCCccceeecchhHHHHHHhhHhHhC--CcCCcEEEEecccccchhhH-HHHHHHhhcceeeeecccCHHHHHHHHH
Q 009756          161 SGTTASPKGVVVSHRGAYLMSLNGALIWG--MNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSICLRQVTAKAVYTAIA  237 (526)
Q Consensus       161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~i~  237 (526)
                      |||||.||+|.++|.++.+........+.  ....++++..+|+.+..+.. ..+.....++.++....+++..+...+.
T Consensus       162 SGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  241 (503)
T d3cw9a1         162 SGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQ  241 (503)
T ss_dssp             CCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHH
T ss_pred             ccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccccccccccccChHHhhhhhh
Confidence            99999999999999999988887776553  45668899999987777665 4445556666777778899999999999


Q ss_pred             hcCceeeeccHHHHHHHHccCC--CCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCC
Q 009756          238 THGVTHFCAAPVVLNAIANASP--EDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKP  314 (526)
Q Consensus       238 ~~~~t~l~~~P~~~~~l~~~~~--~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~  314 (526)
                      .++++.+..+|..+..+.....  ..... +++||.+++||++++++....+. ..+..+.+.||.+|++..+.......
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~  320 (503)
T d3cw9a1         242 QEQVTSLFATPTHLDALAAAAAHAGSSLK-LDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKT  320 (503)
T ss_dssp             HHTCCEEEECHHHHHHHHHHHHHTCTTCC-CTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSS
T ss_pred             hceeecccccccccccccccccccccccc-ccceEEEEeccccccccccccccccccccccccccccccceeeeeccccc
Confidence            9999999999998887665422  22333 68999999999999999999988 55889999999999976665543221


Q ss_pred             CCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCc-cccccccCChhhhhhhhcCCeeecCc
Q 009756          315 EWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWFHSGD  393 (526)
Q Consensus       315 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~-~~~~gy~~~~~~~~~~~~~g~~~tGD  393 (526)
                      ...           ...+.+.+..  ...+....++.++.|  +.|++.+.+. ....+|++++..+.+.|.+|||+|||
T Consensus       321 ~~~-----------~~~~~~~~~~--~~~~~~~~~~~~~~g--~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD  385 (503)
T d3cw9a1         321 GTE-----------MAPGFFSEVR--IVRIGGGVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSD  385 (503)
T ss_dssp             SSE-----------EBCCTTCCEE--EECTTSCTTCBCCTT--CCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEE
T ss_pred             ccc-----------ccccccccce--eeeeecccCcccCCC--ccccccccccccccccccCChhhhHHHhcCCceeccc
Confidence            111           1222222222  222333447888887  7787776665 55678899999999999999999999


Q ss_pred             eeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHH
Q 009756          394 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAED  473 (526)
Q Consensus       394 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  473 (526)
                      +|++++||.++++||.||+||++|++|+|.+||++|.++|+|.+|+|++.+++..|+.++++|+++.+...     ..++
T Consensus       386 ~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~-----~~~~  460 (503)
T d3cw9a1         386 VAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETL-----SADA  460 (503)
T ss_dssp             EEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC-----CHHH
T ss_pred             ccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCC-----CHHH
Confidence            99999999999999999999999999999999999999999999999999998888999999999876654     5678


Q ss_pred             HHHHHH-hcCCCccCCcEEEecc-ccCCCCccccHHHHHHHH
Q 009756          474 VSKFCR-AKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA  513 (526)
Q Consensus       474 l~~~l~-~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~  513 (526)
                      +.++++ ++|++|++|+.+++++ ||+|++|||+|++|++++
T Consensus       461 l~~~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         461 LDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV  502 (503)
T ss_dssp             HHHHHHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence            888885 6899999999999988 999999999999999886

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=86.32  E-value=0.96  Score=42.88  Aligned_cols=101  Identities=11%  Similarity=0.011  Sum_probs=69.9

Q ss_pred             eeecchhHHHHHHhhHh---HhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-cccCHHHHHHHHHhcCceeee
Q 009756          170 VVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFC  245 (526)
Q Consensus       170 v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~  245 (526)
                      ..+|.+.+...+.....   ..+++++|++..+.+-...+ ....++++..|+..+.+ .....+++...++..+++.++
T Consensus        46 ~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~-~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi  124 (541)
T d1lcia_          46 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF  124 (541)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSST-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred             eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEe
Confidence            45788887777665544   45789999998887754332 34555666667766666 457889999999999999999


Q ss_pred             ccHHHHHHHHccCCCCCCCCCCceeeEeccC
Q 009756          246 AAPVVLNAIANASPEDTILPLTNVVNVNTAG  276 (526)
Q Consensus       246 ~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~G  276 (526)
                      +....+..+......     ++.++.+++..
T Consensus       125 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~  150 (541)
T d1lcia_         125 VSKKGLQKILNVQKK-----LPIIQKIIIMD  150 (541)
T ss_dssp             ECGGGHHHHHHHHHH-----CTTCCEEEETT
T ss_pred             eeccccccchhcccc-----ccccceeeeec
Confidence            998877766554321     34445554433