Citrus Sinensis ID: 009757

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520------
Protein Sequence
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAGEFLLLQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEEEcEccccccccccccccEEEccccccccccccEEEEcEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHccccHHHEEEEHHHHHHHHEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccHHHHHccccHHHHEEHHHHHcHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEHHccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
msscslspyrpiyvhinNKFIGIKsinlqfssqfpykstnrklfrnvssnsgsvglrTIVGcrvrtgvssndksfdlapnedealapnflefiTSERVKVVSMLALALALCNADRVVMSVAIVPLSlahgwsrsfsgivQSSFlwgylvspiaggtlvdyyGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEgvalpamnnmvarWFPQTERARAVAIAMggftsgnaiGLVLSpilmsqagifgpfVIFGLSGFLWVLVWLSatsstpdrhpqiskYELEYILREkqkpllmgnkhkpatvippfrrllskmptWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDlrqaswfsavpWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIgltaakspvMASAWLTLAIGMKSFSHSGFLVNlqeiapqysgvlhgisnTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFStgervnfdeAGEFLLLQ
Flexible Loop (DISEMBL)
msscslspyrPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFrnvssnsgsvglrtivgcrvrtgvssndksfdlapnEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSatsstpdrhpqiSKYELEYILREKqkpllmgnkhkpatvippfRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAGEFLLLQ
Low Complexity Region (SEG)
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGfllltsllyflsalfyiifSTGERVNFDEAGEFLLLQ
Disordered region (IsUnstruct)
*******PYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGV***************ALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT*********ISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAGEFLL**
Disordered Region (DISOPRED)
******************************************************************************************EFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYI********************PPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEA*******
Disordered Region (DISEMBL)
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAGEFLLLQ
Disordered Region (DISPRO)
********YRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFR***SNS*SVGLRTIVGCRVR*******************LAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQK***********TVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVN***********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAGEFLLLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	526	2.2.26 [Sep-21-2011]
Q66GI9	533	Probable anion transporte	yes	no	0.916	0.904	0.729	0.0
Q8W0H5	519	Probable anion transporte	yes	no	0.815	0.826	0.716	1e-175
Q7XJR2	512	Probable anion transporte	no	no	0.923	0.949	0.490	1e-136
Q53WP9	535	Probable anion transporte	no	no	0.788	0.775	0.528	1e-123
Q652N5	591	Probable anion transporte	no	no	0.804	0.715	0.400	6e-91
Q8GX78	541	Probable anion transporte	no	no	0.779	0.757	0.398	3e-89
O82390	512	Sodium-dependent phosphat	no	no	0.825	0.847	0.398	2e-86
Q9SDI4	529	Probable anion transporte	no	no	0.779	0.775	0.410	3e-86
Q3E9A0	517	Probable anion transporte	no	no	0.914	0.930	0.288	3e-56
Q2QWW7	439	Probable anion transporte	no	no	0.788	0.945	0.301	4e-51

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/492 (72%), Positives = 415/492 (84%), Gaps = 10/492 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFY 505
           NLQEIAP+YSGVLHG+  TAGT AAI+GTVGAGFFVEL+GSFQGF+LLT++LY LSALFY
Sbjct: 459 NLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLLSALFY 518

Query: 506 IIFSTGERVNFD 517
            I++TGERV+FD
Sbjct: 519 NIYATGERVDFD 530

Inorganic phosphate and probable anion transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  613 bits (1582), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 308/430 (71%), Positives = 369/430 (85%), Gaps = 1/430 (0%)

Query: 91  EFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVS 150
           EF+TSERVKV +ML LALALCNADRVVMSVAIVPLS A+GW+ SF+G+VQSSFLWGYLVS
Sbjct: 91  EFVTSERVKVAAMLGLALALCNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVS 150

Query: 151 PIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAM 210
           PI GG LVDYYGGK +MA+GVALWSLATFL+PWAA  SL   L+ R ++G+AEGVALP+M
Sbjct: 151 PIIGGALVDYYGGKRVMAYGVALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSM 210

Query: 211 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL 270
           NNMV RWFP+TER+ AV IAM GF  GN IGL+LSPI+MS+AGIFGPFVIFGL GFLWVL
Sbjct: 211 NNMVLRWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVL 270

Query: 271 VWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII 330
           VW+SA S TP  + QIS +EL+YI R  QK +   +  +    +PPF +LLSK PTW++I
Sbjct: 271 VWISAISGTPGENAQISAHELDYITR-GQKLVKTQSGGERLRKVPPFSKLLSKWPTWALI 329

Query: 331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR 390
            ANAMHSWG+FVILSWMP+YF  +YH++LR+A+WFSA+PW +MA  GY+ G++SD LIQ 
Sbjct: 330 SANAMHSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQN 389

Query: 391 GTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEI 450
           GTS+TLTRKI+Q+IGF+ PG+AL+GL AAKSPV+ASAWLT+A+G+KSF HSGFLVNLQEI
Sbjct: 390 GTSITLTRKIMQTIGFVGPGVALLGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQEI 449

Query: 451 APQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST 510
           APQY+GVLHG+SNTAGTFAAILGTVGAGFFV+ +GSF+GFL+LTSLLYF S LF+ IF+T
Sbjct: 450 APQYAGVLHGMSNTAGTFAAILGTVGAGFFVDRMGSFRGFLILTSLLYFSSTLFWDIFAT 509

Query: 511 GERVNFDEAG 520
           GERV+FD  G
Sbjct: 510 GERVDFDGTG 519

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  485 bits (1249), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 258/526 (49%), Positives = 351/526 (66%), Gaps = 40/526 (7%)

Query: 2   SSCSLS-PYRPI--------YVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSG 52
           SSCS S P  PI        +V  + +   I+  NL++SS+   K       RN ++   
Sbjct: 13  SSCSSSFPRNPIVNRKALLGFVFDSARKNQIRCENLRYSSESDGKR------RNAAAKKR 66

Query: 53  SVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCN 112
           +          V TG   ++     A  E   + P        ER+KVV + A  + LCN
Sbjct: 67  NQSPERCAAEGVLTGGGGSE-----AIAEVRTMMP--------ERIKVVILTACMMCLCN 113

Query: 113 ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA 172
           ADRVVMSVA+VPL+   GWS SF G+VQSSFLWGY+ S + GG LVD YGGK ++AWGVA
Sbjct: 114 ADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVA 173

Query: 173 LWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMG 232
           LWSLAT LTPWAA  S LALL +RA  GLAEGVA+P+M  +++RWFP  ERA AV I+M 
Sbjct: 174 LWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMA 233

Query: 233 GFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELE 292
           GF  GN +GL+L+P+++S  GI GPF++F   G LWV  W S  ++ P   P I++ EL 
Sbjct: 234 GFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELR 293

Query: 293 YILREKQKPLLMGNKHKPATVIPP----FRRLLSKMPTWSIIVANAMHSWGFFVILSWMP 348
            I  +  KP+      +P+T+ P      R LLSK+PTW+II AN  ++WG+FV+LSWMP
Sbjct: 294 LI--QAGKPV------QPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMP 345

Query: 349 IYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA 408
           +YF  V++++L+QA+WFSA+PW+ MA +GY  G  SD LI+ G SVT  RKI+QSIGF+ 
Sbjct: 346 VYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMG 405

Query: 409 PGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTF 468
           PG++L+ L  AKSP  A+ ++T+A+ + SFS +GFL+N+Q+IAPQY+G LHGISN AGT 
Sbjct: 406 PGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGISNCAGTL 465

Query: 469 AAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERV 514
           AAI+ T+G G+FV+ +GSFQ FL +T+ LYF + +F+++F+TGERV
Sbjct: 466 AAIVSTIGTGYFVQWLGSFQAFLTVTAFLYFATTVFWLLFATGERV 511

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  442 bits (1138), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/422 (52%), Positives = 303/422 (71%), Gaps = 7/422 (1%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           ER KVV+++A  + LCNADRVVMSVA+VP +  +GWS SF GIVQSSFLWGY+ S + GG
Sbjct: 121 ERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMVGG 180

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
            L D YGGK +MA   ALWSLATFLTPWAA  S + LLA+RA+ GLAEGVA P M+  + 
Sbjct: 181 ALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTFLP 240

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           +WFP  ERA AV I+MGGF  GN I  + +PI+MS  G+ G F  F   G+LW+ VWL  
Sbjct: 241 KWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWLFN 300

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM 335
             S P     ISK EL+ IL  +    + G+K       P  R +LSK+  W+IIVAN +
Sbjct: 301 VESDPLDSRTISKSELQLILAGRSASKIQGSK------FPSLREILSKIEMWAIIVANVV 354

Query: 336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVT 395
           ++WG+FV+LSWMP+YF  VY+++L+QA+WFSA+PW+VMA +GY+ G  +D LI+ G SV 
Sbjct: 355 NNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFSVA 414

Query: 396 LTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYS 455
           L RKI+QSIGFI PG++L+ L  A++P +A+  +T+A+ + SFS +G+  N+Q+IAP+Y+
Sbjct: 415 LVRKIMQSIGFIGPGVSLLCLRFAQTPSVAAVLMTIALSLSSFSQAGYFCNVQDIAPKYA 474

Query: 456 GVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVN 515
           G LHG++N  GT AAI+ T+G G+FV+ +GSFQ FL LT++LYF + +FY  ++TG+ + 
Sbjct: 475 GSLHGLTNGIGTVAAIVSTIGTGYFVQWLGSFQAFLTLTAVLYFSATVFYNTYATGDLI- 533

Query: 516 FD 517
           FD
Sbjct: 534 FD 535

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  335 bits (858), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 174/434 (40%), Positives = 264/434 (60%), Gaps = 11/434 (2%)

Query: 81  EDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQ 140
           +   ++P + +F   +R  VV +   +  LCN DRV MS+AI+P+S   GWS +  G++Q
Sbjct: 167 DTNEISPWWQQF--PKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQ 224

Query: 141 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 200
           SSF WGYL++ I GG   D +GGK+++ +GV  WS+AT LTP AA   L  LL MRA +G
Sbjct: 225 SSFFWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMG 284

Query: 201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 260
           + EGVA+PAMNN++++W P +ER+R++A+   G   G+  GL  SP+L+S+ G    F  
Sbjct: 285 IGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYA 344

Query: 261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 320
           FG  G +W  +W     S+P   P++SK E  YIL         G+  K      P++ +
Sbjct: 345 FGSLGSVWFALWQRKAHSSPSEDPELSKAEKRYILG--------GSTLKEPVTSIPWKLI 396

Query: 321 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 380
           LSK P W++IV++  H+WG F++L+WMP Y+N V   +L ++     +PW  MA    +G
Sbjct: 397 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIG 456

Query: 381 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 440
           G ++D L+ RG S+T  RKI+QSIGF+ P + L  L+  ++P MA   +  + G  +FS 
Sbjct: 457 GWIADTLVGRGVSITNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGSDAFSQ 516

Query: 441 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 500
           SG   N Q+I P+Y+GVL G+SNTAG  A + GT   G+ ++  GS+     +  +LY +
Sbjct: 517 SGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-KGSWDSVFQVAVVLYIV 575

Query: 501 SALFYIIFSTGERV 514
             + + +FSTGE+V
Sbjct: 576 GTVVWNVFSTGEKV 589

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  329 bits (844), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 167/419 (39%), Positives = 258/419 (61%), Gaps = 9/419 (2%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
            R  +V +   +  LCN DRV MS+AI+P+S  + WS +  G++QSSF WGYL++ I GG
Sbjct: 130 RRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGG 189

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
              D +GGK+++ +GV  WS AT +TP AA   L  LL +RA +G+ EGVA+PAMNNM++
Sbjct: 190 IWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLS 249

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           +W P +ER+R++A+   G   G+  GL  SP+L+++ G    F  FG  G +W L+WL  
Sbjct: 250 KWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKF 309

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM 335
             S+P   P +S+        E++K +L G+K +    + P++ +LSK P W++I+++  
Sbjct: 310 AYSSPKDDPDLSE--------EEKKVILGGSKPREPVTVIPWKLILSKPPVWALIISHFC 361

Query: 336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVT 395
           H+WG F++L+WMP Y+N V   +L ++     +PW  MA    +GG ++D L+ RG S+T
Sbjct: 362 HNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSIT 421

Query: 396 LTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYS 455
             RKI+QSIGF+ P   L  L+  K+P MA   +  + G  +FS SG   N Q+I P+Y+
Sbjct: 422 NVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYA 481

Query: 456 GVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERV 514
           GVL G+SNTAG  A + GT   G+ ++  GS+     +   LY +  L + +F+TGE++
Sbjct: 482 GVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVALYLIGTLVWNLFATGEKI 539

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  320 bits (819), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 178/447 (39%), Positives = 262/447 (58%), Gaps = 13/447 (2%)

Query: 68  VSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSL 127
           VS N+     +P+    + P + EF   +R  +V +   A  LCN DRV MS+AI+P+S 
Sbjct: 77  VSGNNDVVSDSPSS--IVLPWWEEF--PKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSA 132

Query: 128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT 187
            +GW+ +  G++QSSF WGYL++ IAGG   D  GGK ++ +GV  WS+AT LTP AA  
Sbjct: 133 EYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKL 192

Query: 188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI 247
            L  LL +RA +G+ EGVA+PAMNN++++W P  ER+R++A+   G   G+  GL  SP 
Sbjct: 193 GLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPF 252

Query: 248 LMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNK 307
           L+ Q G    F  FG  G +W+ +WL+   S+P   P         +L E++K +     
Sbjct: 253 LIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPT--------LLPEERKLIADNCA 304

Query: 308 HKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA 367
            K      P+R +LSK P W++I  +  H+WG F++L+WMP Y++ V   +L ++   S 
Sbjct: 305 SKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSV 364

Query: 368 VPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASA 427
            PW  MA +   GG ++D L+ RG SVT  RKI+Q+IGF+ P   L  L    SP MA  
Sbjct: 365 FPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVL 424

Query: 428 WLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSF 487
            +  + G  +FS SG   N Q+IAP+YSGVL G+SNTAG  A +LGT   G  ++  GS+
Sbjct: 425 CMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQH-GSW 483

Query: 488 QGFLLLTSLLYFLSALFYIIFSTGERV 514
                ++  LY +  + + +FSTGE++
Sbjct: 484 DDVFTISVGLYLVGTVIWNLFSTGEKI 510

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  319 bits (818), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 172/419 (41%), Positives = 249/419 (59%), Gaps = 9/419 (2%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           +R  +V +   A  LCN DRV MS+AI+P+S   GW+    G++QSSF WGYL++ IAGG
Sbjct: 118 KRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIAGG 177

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
              D  GGK ++ +GV  WS+AT LTP+AA   L  LL  RA +G+ EGVA+PAMNN+++
Sbjct: 178 IWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNILS 237

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           +W P +ER+R++A+   G   G+  GL  SP+L+   G    F  FG  G  W   W S 
Sbjct: 238 KWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTWASK 297

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM 335
             S+P   P IS  E + I  +           +P   I P+  +LSK P W++IV++  
Sbjct: 298 AYSSPLEDPGISAEEKKLITSQT-------TGGEPVKEI-PWGLILSKPPVWALIVSHFC 349

Query: 336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVT 395
           H+WG F++L+WMP Y+N V   +L ++  F  +PW  MA +   GG ++D L+ RG SVT
Sbjct: 350 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSVT 409

Query: 396 LTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYS 455
             RKI+QSIGF+ P   L  L+   SP MA   +  + G  +FS SG   N Q+I P+Y+
Sbjct: 410 TVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRYA 469

Query: 456 GVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERV 514
           GVL G+SNTAG  A + GT   G+ ++  GS+     ++ +LY +  L + +FSTGE++
Sbjct: 470 GVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVVLYLVGTLVWNLFSTGEKI 527

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1

 Score =  219 bits (559), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 159/551 (28%), Positives = 253/551 (45%), Gaps = 70/551 (12%)

Query: 1   MSSCSLSPYR-----PIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVG 55
           M+  +L P+      PIY H    F+ + +I       FP+   N  +   V  ++    
Sbjct: 1   MARLTLRPHNHFFSSPIYAH-KQPFLSVYTI-------FPHHHQNPLIKSRVKCSASGTE 52

Query: 56  LRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSE---------------RVKV 100
                  RVR       K     P ED        E +++E               R K+
Sbjct: 53  -------RVRESKKLPPKD----PIEDPKPQLPIPEVLSTETGFEQNWPPWKNIPQRYKL 101

Query: 101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY 160
           +   +LA  +CN D+V +S+AI+P+S   GWS S +G+VQSSF WGY +S + GG L   
Sbjct: 102 IGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLSKI 161

Query: 161 YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQ 220
           +GG+ ++  GV  WS AT L P  A   +  L+  R +VG+ EGV+  A  +++AR  P 
Sbjct: 162 FGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFSRILVGIGEGVSPSAATDLIARTIPV 220

Query: 221 TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWV----------L 270
            ER+RAV    GG + G+ +GL+L+P ++        F +FGL G  W           +
Sbjct: 221 KERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFLNEEEV 280

Query: 271 VWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII 330
            +     ST  +    +K EL   L+E                  P++        W++I
Sbjct: 281 SYKGNEISTSHKSENATKEELGSSLKEI-----------------PWKSFFQSPAVWAMI 323

Query: 331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR 390
             +   SWG +  LSW+P YF+    ++L +A+W S +P         L    +D LI  
Sbjct: 324 YTHFCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITN 383

Query: 391 GTSVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
           G   T  RKI Q+I F+AP I +    +     P      LT  + + SF+ SG     Q
Sbjct: 384 GVDTTTVRKICQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQ 443

Query: 449 EIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSA-LFYII 507
           +I+P+Y+ +L GI+NT G    I+G    GF ++   S+   L + S+ ++L+  + ++ 
Sbjct: 444 DISPEYASILLGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYLTGTVVWLA 503

Query: 508 FSTGERVNFDE 518
           F++ E   F +
Sbjct: 504 FASSEPQTFRK 514

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QWW7|PHT47_ORYSJ Probable anion transporter 7 OS=Oryza sativa subsp. japonica GN=PHT4;7 PE=2 SV=1

 Score =  202 bits (515), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 229/431 (53%), Gaps = 16/431 (3%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           +R  +V +  +   +C  +RV  S+A    + A G +++  G++ S F +GY++S I GG
Sbjct: 11  KRYVIVLLTFICTNVCYIERVGFSIAYTVAADAIGVNQANKGMILSMFYYGYVLSQIPGG 70

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
                 GG+ ++     LWSL   L P      ++ +L+ R  VG+A+G   PA++ ++A
Sbjct: 71  WAAQRIGGRRVLLLSFVLWSLICGLIPLDPKREVILVLS-RLFVGVAQGFIFPAIHTVLA 129

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           +W P  ER+R+V++   G   G A G++  P L+   G    F +  + G  W ++WL  
Sbjct: 130 QWVPPQERSRSVSLTTSGMYLGAAGGMLFFPSLVKHMGAQSVFFVEAVLGVAWSVIWLKF 189

Query: 276 TSSTPDRH-PQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA 334
           +S  P    P++S  ++    REK K    G    P TV  P+RR++  +P W+I+V N 
Sbjct: 190 SSEPPRTDLPKVSMPKVAS--REKIKAQ-AGGVVAPRTVKIPWRRIIFSLPVWAIVVNNF 246

Query: 335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT-S 393
              +  +V+++W+P YF     + L+       +P+  M     +GG+++D LI R   S
Sbjct: 247 TFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMLPYFNMFIFSNIGGVVADHLITRRILS 306

Query: 394 VTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ 453
           +T TRK+L +IGF+   +AL+ L   ++P       ++++G  +   +GF VN  ++AP+
Sbjct: 307 ITKTRKLLNTIGFVVSAVALMALPLFRTPSGTVLCSSISLGFLALGRAGFAVNHMDVAPK 366

Query: 454 YSGVLHGISNTAGTFAAILGTVGAGFFVE--------LVGS--FQGFLLLTSLLYFLSAL 503
           ++G++ G+SNTAGT A I+G    G  +E        L  S  ++    +   L   S++
Sbjct: 367 FAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKASNMDLTNSETWKTVFFVPGYLCIFSSI 426

Query: 504 FYIIFSTGERV 514
            ++IFSTGE++
Sbjct: 427 IFLIFSTGEKI 437

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	526
224054570	550	predicted protein [Populus trichocarpa]	0.891	0.852	0.804	0.0
225434688	525	PREDICTED: probable anion transporter 4,	0.916	0.918	0.755	0.0
449470650	530	PREDICTED: probable anion transporter 4,	0.903	0.896	0.766	0.0
449455040	530	PREDICTED: probable anion transporter 4,	0.903	0.896	0.764	0.0
297819304	533	hypothetical protein ARALYDRAFT_485075 [	0.977	0.964	0.690	0.0
17064732	533	putative protein [Arabidopsis thaliana]	0.916	0.904	0.729	0.0
22331630	533	putative anion transporter 4 [Arabidopsi	0.916	0.904	0.729	0.0
79314547	534	putative anion transporter 4 [Arabidopsi	0.916	0.902	0.729	0.0
255558820	554	Sialin, putative [Ricinus communis] gi|2	0.918	0.871	0.723	0.0
356553048	515	PREDICTED: probable anion transporter 4,	0.901	0.920	0.75	0.0

>gi|224054570|ref|XP_002298326.1| predicted protein [Populus trichocarpa] gi|222845584|gb|EEE83131.1| predicted protein [Populus trichocarpa]

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/471 (80%), Positives = 415/471 (88%), Gaps = 2/471 (0%)

Query: 51  SGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALAL 110
           +GSV  RT+   RVR  VSSND  F     + E  AP+F EFITSER+KVVSMLALALAL
Sbjct: 60  NGSVEFRTVPSLRVR--VSSNDAQFGSLNEDCEPKAPSFREFITSERIKVVSMLALALAL 117

Query: 111 CNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWG 170
           CNADRVVMSVAIVPLSLAHGWSRSFSG+VQSSFLWGYL+SPIAGGTLVDYYGGK++M WG
Sbjct: 118 CNADRVVMSVAIVPLSLAHGWSRSFSGVVQSSFLWGYLISPIAGGTLVDYYGGKVVMGWG 177

Query: 171 VALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIA 230
           VALWSLATFLTPWAADTSL ALLA RA++G+AEGVALP MNNM+ARWFPQTERARAV IA
Sbjct: 178 VALWSLATFLTPWAADTSLWALLATRAMLGIAEGVALPCMNNMIARWFPQTERARAVGIA 237

Query: 231 MGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYE 290
           M GF  GNAIGL+LSPILMS+ GIFGPFVIFGLSGFLWVLVWLSA SSTPDR  QISKYE
Sbjct: 238 MAGFQFGNAIGLMLSPILMSKGGIFGPFVIFGLSGFLWVLVWLSAISSTPDRSSQISKYE 297

Query: 291 LEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY 350
           LEYIL +  K   M NK K   +IPPFRRLLSKMPTWS+I+ANAMHSWGFFVILSWMPIY
Sbjct: 298 LEYILNKGWKSFPMENKPKTNRIIPPFRRLLSKMPTWSLIIANAMHSWGFFVILSWMPIY 357

Query: 351 FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPG 410
           FN +YH+DL+QA+WFSAVPWSVM F GY GG  SDMLI+ G SVTLTRKI+QSIGF  PG
Sbjct: 358 FNTIYHVDLKQAAWFSAVPWSVMGFMGYFGGTWSDMLIRSGISVTLTRKIMQSIGFFGPG 417

Query: 411 IALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAA 470
           IALIGLT A++P +ASAWLT+A+G+KSFSHSGFLVNLQEIAP+YSGVLHGISNTAGT AA
Sbjct: 418 IALIGLTTARNPFLASAWLTIAVGLKSFSHSGFLVNLQEIAPRYSGVLHGISNTAGTLAA 477

Query: 471 ILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAGE 521
           I+GTVGAGFFVELVGSF+GFLLLTSLLYFL+ALFY IFSTGERVNFDE G+
Sbjct: 478 IVGTVGAGFFVELVGSFRGFLLLTSLLYFLAALFYNIFSTGERVNFDETGQ 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434688|ref|XP_002279865.1| PREDICTED: probable anion transporter 4, chloroplastic [Vitis vinifera]

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/494 (75%), Positives = 420/494 (85%), Gaps = 12/494 (2%)

Query: 34  FPYK---STNRKLFRNVSSNSGSVGLR-----TIVGCRVRTGVSSNDKSFDLAP--NEDE 83
           FP++   ST +  FR VSS + S+ LR        G R R      D SF       E E
Sbjct: 34  FPFRLIESTKQNSFRIVSSAT-SLRLRLRYDSVERGLRARVSSDGGD-SFTGGELQEEKE 91

Query: 84  ALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSF 143
             AP+F+EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+HGWSRSF G+VQSSF
Sbjct: 92  LQAPSFVEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSHGWSRSFGGVVQSSF 151

Query: 144 LWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE 203
           LWGYL+SPIAGG LVDYYGGK++MAWGVALWSLATFLTPWAA+TS+ ALL MRA++G+AE
Sbjct: 152 LWGYLISPIAGGALVDYYGGKVVMAWGVALWSLATFLTPWAAETSIWALLTMRALLGVAE 211

Query: 204 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL 263
           GVALP MNNMVARWFPQTER+RAV IAM GF  G+AIGL L+PILMSQ GIFGPFVIFGL
Sbjct: 212 GVALPCMNNMVARWFPQTERSRAVGIAMAGFQLGSAIGLTLAPILMSQGGIFGPFVIFGL 271

Query: 264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK 323
           SGFLWVLVW+SATSSTPD++PQISK EL+YIL   +K   + N+ K   VIPPFRRLLSK
Sbjct: 272 SGFLWVLVWISATSSTPDQNPQISKSELDYILNNGRKSFRVENQAKRTKVIPPFRRLLSK 331

Query: 324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLL 383
            PTWS+IVANAMHSWGFFVILSWMPIYFN ++ +DL QA+WFSAVPWS+MA  GY GG  
Sbjct: 332 PPTWSLIVANAMHSWGFFVILSWMPIYFNTIHRVDLTQAAWFSAVPWSMMAIVGYFGGAW 391

Query: 384 SDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGF 443
           SD+LIQRG SVT+TRKI+QSIGF+ PGIALIGLTAAKSP++ASAWLTLA+G+KSFSHSGF
Sbjct: 392 SDILIQRGLSVTMTRKIMQSIGFVGPGIALIGLTAAKSPLIASAWLTLAVGLKSFSHSGF 451

Query: 444 LVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSAL 503
           LVNLQEIAPQYSGVLHG+SNTAGTFAAI+GT+GAGFFVELVGSFQGFLLLTS LY LSAL
Sbjct: 452 LVNLQEIAPQYSGVLHGLSNTAGTFAAIVGTIGAGFFVELVGSFQGFLLLTSFLYILSAL 511

Query: 504 FYIIFSTGERVNFD 517
           F+ IF+TGERVNFD
Sbjct: 512 FFDIFATGERVNFD 525

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470650|ref|XP_004153029.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus] gi|449474939|ref|XP_004154326.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus] gi|449510734|ref|XP_004163745.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus]

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/488 (76%), Positives = 420/488 (86%), Gaps = 13/488 (2%)

Query: 45  RNVSSNSGSVGLRTIVGCR------------VRTGVSSNDKSFDLAPNEDEALAPNFLEF 92
           RN + +  S G   + G R             R GVSSND  F     + +  +P+F EF
Sbjct: 44  RNCTGSLSSAGYFPVFGLRNGSSSDSGFVLPSRIGVSSNDAQFGSFAEDKDMESPSFFEF 103

Query: 93  ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPI 152
           ITSERVKVV+MLALALALCNADRVVMSVAIVPLSL++GWSRSF+GIVQSSFLWGY VSPI
Sbjct: 104 ITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSNGWSRSFAGIVQSSFLWGYFVSPI 163

Query: 153 AGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 212
           AGG LVDYYGGK++M WGVALWSLATFLTPWAA+TSL ALLAMRA++G+AEGVALP MNN
Sbjct: 164 AGGALVDYYGGKMVMGWGVALWSLATFLTPWAAETSLWALLAMRALLGIAEGVALPCMNN 223

Query: 213 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 272
           MVARWFP TERARAV IAM GF  G+AIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW
Sbjct: 224 MVARWFPPTERARAVGIAMAGFQLGSAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 283

Query: 273 LSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVA 332
           LSA SSTPDR+ QISKYELEY+L ++Q+P ++ N  K  TVIPPF+RLLSKMPTWS+I+A
Sbjct: 284 LSAISSTPDRNLQISKYELEYVLSKRQQPSVVENVPK-KTVIPPFKRLLSKMPTWSLIIA 342

Query: 333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT 392
           NAMHSWGFFVILSWMPIYFN VYH+DLRQA+WFSAVPW+VMA  GY+GGL SD LI+ GT
Sbjct: 343 NAMHSWGFFVILSWMPIYFNSVYHVDLRQAAWFSAVPWAVMALMGYVGGLWSDGLIKSGT 402

Query: 393 SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP 452
           SVTLTRKI+QSIGFI PGIALIGLT+A+S  +ASAWLTLA+G+KSFSHSGFLVNLQEIAP
Sbjct: 403 SVTLTRKIMQSIGFIGPGIALIGLTSARSASLASAWLTLAVGLKSFSHSGFLVNLQEIAP 462

Query: 453 QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGE 512
           QYSGVLHG+SNTAGT AAI+GTVG GFFVE+VGSFQGFLLLTS LYF +A+FYIIFSTG+
Sbjct: 463 QYSGVLHGMSNTAGTLAAIVGTVGVGFFVEIVGSFQGFLLLTSALYFTAAIFYIIFSTGK 522

Query: 513 RVNFDEAG 520
           RVNF+E G
Sbjct: 523 RVNFEETG 530

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455040|ref|XP_004145261.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/488 (76%), Positives = 419/488 (85%), Gaps = 13/488 (2%)

Query: 45  RNVSSNSGSVGLRTIVGCR------------VRTGVSSNDKSFDLAPNEDEALAPNFLEF 92
           RN + +  S G   + G R             R GVSSND  F     + +  +P+F EF
Sbjct: 44  RNCTGSLSSAGYFPVFGLRNGSSSDSGFVLPSRIGVSSNDAQFGSFAEDKDMESPSFFEF 103

Query: 93  ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPI 152
           ITSERVKVV+MLALALALCNADRVVMSVAIVPLSL++GWSRSF+GIVQSSFLWGY VSPI
Sbjct: 104 ITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSNGWSRSFAGIVQSSFLWGYFVSPI 163

Query: 153 AGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 212
           AGG LVDYYGGK++M WGVALWSLATFLTPWAA+TSL ALLAMRA++G+AEGVALP MNN
Sbjct: 164 AGGALVDYYGGKMVMGWGVALWSLATFLTPWAAETSLWALLAMRALLGIAEGVALPCMNN 223

Query: 213 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 272
           MVARWFP TERARAV IAM GF  G+AIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW
Sbjct: 224 MVARWFPPTERARAVGIAMAGFQLGSAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 283

Query: 273 LSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVA 332
           LSA SSTPDR+ QISKYELEY+L ++Q+P ++ N  K  TVIPPF+RLLSKMPTWS+I+A
Sbjct: 284 LSAISSTPDRNLQISKYELEYVLSKRQQPSVVENVPK-KTVIPPFKRLLSKMPTWSLIIA 342

Query: 333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT 392
           NAMHSWGFFVILSWMPIYFN VYH+DLRQA+WFSAVPW+VMA  GY+GGL SD LI+ GT
Sbjct: 343 NAMHSWGFFVILSWMPIYFNSVYHVDLRQAAWFSAVPWAVMALMGYVGGLWSDGLIKSGT 402

Query: 393 SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP 452
           SVTLTRKI+QSIGFI PGIALIGLT+A+S  +ASAWLTLA+ +KSFSHSGFLVNLQEIAP
Sbjct: 403 SVTLTRKIMQSIGFIGPGIALIGLTSARSASLASAWLTLAVWLKSFSHSGFLVNLQEIAP 462

Query: 453 QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGE 512
           QYSGVLHG+SNTAGT AAI+GTVG GFFVE+VGSFQGFLLLTS LYF +A+FYIIFSTG+
Sbjct: 463 QYSGVLHGMSNTAGTLAAIVGTVGVGFFVEIVGSFQGFLLLTSALYFTAAIFYIIFSTGK 522

Query: 513 RVNFDEAG 520
           RVNF+E G
Sbjct: 523 RVNFEETG 530

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819304|ref|XP_002877535.1| hypothetical protein ARALYDRAFT_485075 [Arabidopsis lyrata subsp. lyrata] gi|297323373|gb|EFH53794.1| hypothetical protein ARALYDRAFT_485075 [Arabidopsis lyrata subsp. lyrata]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/524 (69%), Positives = 422/524 (80%), Gaps = 10/524 (1%)

Query: 2   SSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLF----RNVSS----NSGS 53
           SS        + +H +   +      L+     P +   RKL     R+V S     + +
Sbjct: 9   SSIDFRNRSSLKIHGDRAILDSNLPTLRRIPSLPERDRRRKLLLCSGRSVGSLRFTGNTA 68

Query: 54  VGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNA 113
           V L  I   R+R   S   +S +    E  A  PNF EFITSERVKVV+MLALALALCNA
Sbjct: 69  VHLCGIPRHRLRVSCSDARRSPEETAAEMTA-QPNFSEFITSERVKVVAMLALALALCNA 127

Query: 114 DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL 173
           DRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLWGYL+SPIAGGTLVD YGGK++MAWGVAL
Sbjct: 128 DRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLWGYLISPIAGGTLVDRYGGKVVMAWGVAL 187

Query: 174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGG 233
           WSLATFLTPWAAD+SL ALLA RA+VG+AEGVALP MNNMVARWFP TER+RAV IAM G
Sbjct: 188 WSLATFLTPWAADSSLWALLAARAMVGVAEGVALPCMNNMVARWFPSTERSRAVGIAMAG 247

Query: 234 FTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 293
           F  GN +GL+LSPILMSQ GI+GPFVIFGLSGFLW+LVWLSATSS PDRHPQI+K ELEY
Sbjct: 248 FQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGFLWLLVWLSATSSAPDRHPQITKSELEY 307

Query: 294 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNF 353
           I ++KQ+P    NK      IPPF RLLSKMPTW++IVAN+MHSWGFFVILSWMPIYFN 
Sbjct: 308 I-KQKQQPSTGENKRNTTGGIPPFGRLLSKMPTWAVIVANSMHSWGFFVILSWMPIYFNS 366

Query: 354 VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL 413
           VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD+LI+RGTS+TLTRKI+QSIGFI PGI+L
Sbjct: 367 VYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSDLLIRRGTSITLTRKIMQSIGFIGPGISL 426

Query: 414 IGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILG 473
           IGLT AK P++ASAWL+LA+G+KSFSH GFL+NLQEIAP+YSGVLHG+  TAGT AAI+G
Sbjct: 427 IGLTTAKQPLVASAWLSLAVGLKSFSHLGFLINLQEIAPEYSGVLHGMCLTAGTLAAIVG 486

Query: 474 TVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFD 517
           TVG GFFVEL+GSFQGF+LLT++LY LSALFY I++TGERV+FD
Sbjct: 487 TVGTGFFVELLGSFQGFILLTAILYLLSALFYNIYATGERVDFD 530

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17064732|gb|AAL32520.1| putative protein [Arabidopsis thaliana]

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/492 (72%), Positives = 415/492 (84%), Gaps = 10/492 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPTTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFY 505
           NLQEIAP+YSGVLHG+  TAGT AAI+GTVGAGFFVEL+GSFQGF+LLT++LY LSALFY
Sbjct: 459 NLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLLSALFY 518

Query: 506 IIFSTGERVNFD 517
            I++TGERV+FD
Sbjct: 519 NIYATGERVDFD 530

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331630|ref|NP_190282.2| putative anion transporter 4 [Arabidopsis thaliana] gi|75253404|sp|Q66GI9.1|ANTR4_ARATH RecName: Full=Probable anion transporter 4, chloroplastic; AltName: Full=Phosphate transporter PHT4;3; Flags: Precursor gi|51536596|gb|AAU05536.1| At3g46980 [Arabidopsis thaliana] gi|332644705|gb|AEE78226.1| putative anion transporter 4 [Arabidopsis thaliana]

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/492 (72%), Positives = 415/492 (84%), Gaps = 10/492 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFY 505
           NLQEIAP+YSGVLHG+  TAGT AAI+GTVGAGFFVEL+GSFQGF+LLT++LY LSALFY
Sbjct: 459 NLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLLSALFY 518

Query: 506 IIFSTGERVNFD 517
            I++TGERV+FD
Sbjct: 519 NIYATGERVDFD 530

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79314547|ref|NP_001030824.1| putative anion transporter 4 [Arabidopsis thaliana] gi|332644707|gb|AEE78228.1| putative anion transporter 4 [Arabidopsis thaliana]

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/492 (72%), Positives = 415/492 (84%), Gaps = 10/492 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFY 505
           NLQEIAP+YSGVLHG+  TAGT AAI+GTVGAGFFVEL+GSFQGF+LLT++LY LSALFY
Sbjct: 459 NLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLLSALFY 518

Query: 506 IIFSTGERVNFD 517
            I++TGERV+FD
Sbjct: 519 NIYATGERVDFD 530

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558820|ref|XP_002520433.1| Sialin, putative [Ricinus communis] gi|223540275|gb|EEF41846.1| Sialin, putative [Ricinus communis]

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/496 (72%), Positives = 409/496 (82%), Gaps = 13/496 (2%)

Query: 30  FSSQFPYKSTNRKLFRNVSSNSGSV-GLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL--- 85
           F S+F   S ++ +       S S+   R +   R+R  VSS D  F   P  +E     
Sbjct: 35  FPSRFQAVSDSQNVSVKFQLQSDSIFKFRGVCSSRIR--VSSEDARFSSLPKREEEEEEE 92

Query: 86  -------APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGI 138
                    +F EFITSERVKV +MLALAL+LCNADRVVMSVAIVPLSLA+GW+RSFSGI
Sbjct: 93  EEEEEDKVASFREFITSERVKVAAMLALALSLCNADRVVMSVAIVPLSLANGWTRSFSGI 152

Query: 139 VQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAV 198
           VQSSFLWGYL+SPIAGGTLVDYYGGK++M WGVALWSLATFLTP+AA+TSL  L+AMRA+
Sbjct: 153 VQSSFLWGYLISPIAGGTLVDYYGGKVVMGWGVALWSLATFLTPFAAETSLWVLMAMRAL 212

Query: 199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF 258
           +G+AEGVALP MNNM+ARWFP TERARAV IAM GF  G AIGL LSPILMSQ GIFGPF
Sbjct: 213 LGIAEGVALPCMNNMIARWFPPTERARAVGIAMAGFQLGCAIGLTLSPILMSQGGIFGPF 272

Query: 259 VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFR 318
           VIFGLSGFLWVLVWLSA SS+PDR  QISK ELEYIL++KQ+   + NK K   +IPPFR
Sbjct: 273 VIFGLSGFLWVLVWLSAISSSPDRSSQISKCELEYILKKKQQSFPVENKPKTTRIIPPFR 332

Query: 319 RLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGY 378
           RLLSKMPTW++IVAN+MHSWGFFVILSWMPIYFN +YH+DL++A+WFSAVPWSVMA  GY
Sbjct: 333 RLLSKMPTWALIVANSMHSWGFFVILSWMPIYFNSIYHVDLKRAAWFSAVPWSVMAVMGY 392

Query: 379 LGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSF 438
            GG+ SD LI+ G ++TLTRKI+QSIGF+ PGIALIGLT AKSP +ASAWLTLA+ +K+F
Sbjct: 393 FGGMWSDTLIRSGMTITLTRKIMQSIGFMGPGIALIGLTTAKSPTIASAWLTLAVALKAF 452

Query: 439 SHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLY 498
           SHSGFLVN QEIAPQYSGVLHGISNTAGT AAI+GTVGAGFFVELVGSFQGFLLLTS LY
Sbjct: 453 SHSGFLVNFQEIAPQYSGVLHGISNTAGTLAAIMGTVGAGFFVELVGSFQGFLLLTSALY 512

Query: 499 FLSALFYIIFSTGERV 514
           FLSALFYI FSTGE++
Sbjct: 513 FLSALFYIFFSTGEKL 528

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553048|ref|XP_003544870.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Glycine max]

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/484 (75%), Positives = 410/484 (84%), Gaps = 10/484 (2%)

Query: 37  KSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPN-FLEFITS 95
           K T  K F N SS S    LR++     R  VSSND  F+  P E +    + F EFITS
Sbjct: 37  KRTEFKFFANGSSAS----LRSLP----RLYVSSNDARFNSGPEESQQQQSSSFAEFITS 88

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           ERVKVV+MLALALALCNADRVVMSVAIVPLSLA+GWSR+F+GIVQSSFLWGYLVSPIAGG
Sbjct: 89  ERVKVVAMLALALALCNADRVVMSVAIVPLSLANGWSRAFAGIVQSSFLWGYLVSPIAGG 148

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
            LVD+YGGK++MAWGVALWSLATFLTPWA+ TSLLALL +RA++G+AEGVALP+MNNMV 
Sbjct: 149 VLVDHYGGKVVMAWGVALWSLATFLTPWASQTSLLALLTVRALLGVAEGVALPSMNNMVV 208

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           RWFPQTER+RAV I+M GF  G AIGL LSPILMSQ GIFGPFVIFGLSGFLWVLVWLSA
Sbjct: 209 RWFPQTERSRAVGISMAGFMLGCAIGLTLSPILMSQGGIFGPFVIFGLSGFLWVLVWLSA 268

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGN-KHKPATVIPPFRRLLSKMPTWSIIVANA 334
           TSSTPD+ PQISKYELEYIL  +QK   +   K K   VIPPFRRLLSK+PTWS+I+ANA
Sbjct: 269 TSSTPDQSPQISKYELEYILNRRQKSFSVETAKPKKVKVIPPFRRLLSKLPTWSLIIANA 328

Query: 335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSV 394
           MHSWGFF++LSWMPIYF+ VY +DLR A+WFSAVPW++MA  GY  GL SDM+IQ GTSV
Sbjct: 329 MHSWGFFIVLSWMPIYFSSVYRVDLRHAAWFSAVPWALMAVMGYFAGLWSDMMIQSGTSV 388

Query: 395 TLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQY 454
           TLTRKI+Q IGF+ PG+ LIGL  AK+P + SAWLTLA G+KSFSHSGFLVNLQEIAP+Y
Sbjct: 389 TLTRKIMQCIGFVGPGLCLIGLATAKNPAIGSAWLTLAFGLKSFSHSGFLVNLQEIAPRY 448

Query: 455 SGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERV 514
           SGVLHGISNTAGT AAI+GTVGAGFFVELVGSF GFLLLTSLLYFL+A+FY +F+TGERV
Sbjct: 449 SGVLHGISNTAGTLAAIIGTVGAGFFVELVGSFPGFLLLTSLLYFLAAIFYCLFATGERV 508

Query: 515 NFDE 518
           NFD+
Sbjct: 509 NFDD 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	526
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	0.807	0.830	0.531	8.3e-122
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.769	0.748	0.399	1.7e-84
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.821	0.843	0.396	3.2e-81
TAIR|locus:2149199	517	PHT4;5 "phosphate transporter	0.726	0.738	0.330	5.3e-56
UNIPROTKB|E1B7R3	495	SLC17A5 "Uncharacterized prote	0.640	0.680	0.339	3.1e-51
TAIR|locus:2158710	432	PHT4;6 "AT5G44370" [Arabidopsi	0.718	0.875	0.315	1.1e-50
UNIPROTKB|F1RQG9	497	SLC17A5 "Uncharacterized prote	0.640	0.678	0.342	2.8e-50
RGD|1311388	495	Slc17a5 "solute carrier family	0.640	0.680	0.321	4.6e-50
MGI|MGI:1924105	495	Slc17a5 "solute carrier family	0.640	0.680	0.318	7.4e-50
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.644	0.700	0.325	1.5e-49

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
 Identities = 230/433 (53%), Positives = 303/433 (69%)

Query:    83 EALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSS 142
             EA+A   +  +  ER+KVV + A  + LCNADRVVMSVA+VPL+   GWS SF G+VQSS
Sbjct:    86 EAIAE--VRTMMPERIKVVILTACMMCLCNADRVVMSVAVVPLADKLGWSSSFLGVVQSS 143

Query:   143 FLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLA 202
             FLWGY+ S + GG LVD YGGK ++AWGVALWSLAT LTPWAA  S LALL +RA  GLA
Sbjct:   144 FLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFGLA 203

Query:   203 EGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG 262
             EGVA+P+M  +++RWFP  ERA AV I+M GF  GN +GL+L+P+++S  GI GPF++F 
Sbjct:   204 EGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFA 263

Query:   263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN-KHKPATVIPPFRRLL 321
               G LWV  W S  ++ P   P I++ EL  I  +  KP+       KP    P  R LL
Sbjct:   264 SLGLLWVSTWSSGVTNNPQDSPFITRSELRLI--QAGKPVQPSTISPKPN---PSLRLLL 318

Query:   322 SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG 381
             SK+PTW+II AN  ++WG+FV+LSWMP+YF  V++++L+QA+WFSA+PW+ MA +GY  G
Sbjct:   319 SKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAG 378

Query:   382 LLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHS 441
               SD LI+ G SVT  RKI+QSIGF+ PG++L+ L  AKSP  A+ ++T+A+ + SFS +
Sbjct:   379 AASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQA 438

Query:   442 GFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGXXXXXXXXXXXX 501
             GFL+N+Q+IAPQY+G LHGISN AGT AAI+ T+G G+FV+ +GSFQ             
Sbjct:   439 GFLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTAFLYFAT 498

Query:   502 XXXXXXXSTGERV 514
                    +TGERV
Sbjct:   499 TVFWLLFATGERV 511

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 166/416 (39%), Positives = 252/416 (60%)

Query:   100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD 159
             +V +   +  LCN DRV MS+AI+P+S  + WS +  G++QSSF WGYL++ I GG   D
Sbjct:   134 IVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGGIWAD 193

Query:   160 YYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP 219
              +GGK+++ +GV  WS AT +TP AA   L  LL +RA +G+ EGVA+PAMNNM+++W P
Sbjct:   194 KFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKWIP 253

Query:   220 QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST 279
              +ER+R++A+   G   G+  GL  SP+L+++ G    F  FG  G +W L+WL    S+
Sbjct:   254 VSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAYSS 313

Query:   280 PDRHPQISKYELEYILREKQKPLLMGNK-HKPATVIPPFRRLLSKMPTWSIIVANAMHSW 338
             P   P +S+        E++K +L G+K  +P TVIP ++ +LSK P W++I+++  H+W
Sbjct:   314 PKDDPDLSE--------EEKKVILGGSKPREPVTVIP-WKLILSKPPVWALIISHFCHNW 364

Query:   339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTR 398
             G F++L+WMP Y+N V   +L ++     +PW  MA    +GG ++D L+ RG S+T  R
Sbjct:   365 GTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSITNVR 424

Query:   399 KILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVL 458
             KI+QSIGF+ P   L  L+  K+P MA   +  + G  +FS SG   N Q+I P+Y+GVL
Sbjct:   425 KIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVL 484

Query:   459 HGISNTAGTFAAILGTVGAGFFVELVGSFQGXXXXXXXXXXXXXXXXXXXSTGERV 514
              G+SNTAG  A + GT   G+ ++  GS+                     +TGE++
Sbjct:   485 LGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVALYLIGTLVWNLFATGEKI 539

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 178/449 (39%), Positives = 257/449 (57%)

Query:    68 VSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSL 127
             VS N+     +P+    + P + EF   +R  +V +   A  LCN DRV MS+AI+P+S 
Sbjct:    77 VSGNNDVVSDSPSS--IVLPWWEEF--PKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSA 132

Query:   128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT 187
              +GW+ +  G++QSSF WGYL++ IAGG   D  GGK ++ +GV  WS+AT LTP AA  
Sbjct:   133 EYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKL 192

Query:   188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI 247
              L  LL +RA +G+ EGVA+PAMNN++++W P  ER+R++A+   G   G+  GL  SP 
Sbjct:   193 GLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPF 252

Query:   248 LMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN- 306
             L+ Q G    F  FG  G +W+ +WL+   S+P   P +        L E++K L+  N 
Sbjct:   253 LIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTL--------LPEERK-LIADNC 303

Query:   307 -KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWF 365
                +P   IP +R +LSK P W++I  +  H+WG F++L+WMP Y++ V   +L ++   
Sbjct:   304 ASKEPVKSIP-WRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLL 362

Query:   366 SAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMA 425
             S  PW  MA +   GG ++D L+ RG SVT  RKI+Q+IGF+ P   L  L    SP MA
Sbjct:   363 SVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMA 422

Query:   426 SAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 485
                +  + G  +FS SG   N Q+IAP+YSGVL G+SNTAG  A +LGT   G  ++  G
Sbjct:   423 VLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQH-G 481

Query:   486 SFQGXXXXXXXXXXXXXXXXXXXSTGERV 514
             S+                     STGE++
Sbjct:   482 SWDDVFTISVGLYLVGTVIWNLFSTGEKI 510

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 131/396 (33%), Positives = 206/396 (52%)

Query:    96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
             +R K++   +LA  +CN D+V +S+AI+P+S   GWS S +G+VQSSF WGY +S + GG
Sbjct:    97 QRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGG 156

Query:   156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
              L   +GG+ ++  GV  WS AT L P  A   +  L+  R +VG+ EGV+  A  +++A
Sbjct:   157 WLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFSRILVGIGEGVSPSAATDLIA 215

Query:   216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
             R  P  ER+RAV    GG + G+ +GL+L+P ++        F +FGL G  W + +   
Sbjct:   216 RTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFL 275

Query:   276 TSSTPD-RHPQIS-KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN 333
                    +  +IS  ++ E   +E+     +G+  K      P++        W++I  +
Sbjct:   276 NEEEVSYKGNEISTSHKSENATKEE-----LGSSLKEI----PWKSFFQSPAVWAMIYTH 326

Query:   334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS 393
                SWG +  LSW+P YF+    ++L +A+W S +P         L    +D LI  G  
Sbjct:   327 FCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVD 386

Query:   394 VTLTRKILQSIGFIAPGIA--LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA 451
              T  RKI Q+I F+AP I   L  +     P      LT  + + SF+ SG     Q+I+
Sbjct:   387 TTTVRKICQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDIS 446

Query:   452 PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSF 487
             P+Y+ +L GI+NT G    I+G    GF ++   S+
Sbjct:   447 PEYASILLGITNTVGAVPGIVGVALTGFLLDSTHSW 482

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 118/348 (33%), Positives = 185/348 (53%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W     G +  SF +GY+++ I GG +    GGK+++ +GV   ++ T  TP AAD    
Sbjct:   103 WDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGVLGTAVFTLFTPLAADFGFG 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS 250
             AL+A+RA+ GL EGV  PAM+ M + W P  ER++ ++I+  G   G  + L LS ++  
Sbjct:   163 ALVALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGVICY 222

Query:   251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP 310
                    F  FGL G +W ++W+   S TP+ H  I+ YE EYIL   +  L   +  K 
Sbjct:   223 YMNWTYVFYFFGLVGIIWFILWICLVSDTPETHKTITPYEKEYILSSLKNQL---SSQKS 279

Query:   311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 370
                IP    +L  +P W+I+VA+  ++W F+ +L+ +P Y   V   ++++  + SAVP+
Sbjct:   280 VPWIP----MLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPY 335

Query:   371 SVMAFTGYLGGLLSDMLIQRGTSVTL-TRKILQSIGFIAPGIALI--GLTAAKSPVMASA 427
                     L G  +D L  R    TL  R++   IG I P I L+  G        +A A
Sbjct:   336 LGCWLCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYS-LAVA 394

Query:   428 WLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 475
             +LT++  +  F  SGF +N  +IAP Y+G+L GI+NT  T   ++G +
Sbjct:   395 FLTISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPI 442

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2158710 PHT4;6 "AT5G44370" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 123/390 (31%), Positives = 205/390 (52%)

Query:    96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
             +R  +V +  L+  +C  +RV  S+A    + A G ++S  G + S+F  GY  S + GG
Sbjct:     8 QRYVIVFLTFLSTCVCYIERVGFSIAYTVAADAAGINQSSKGTILSTFFVGYACSQVPGG 67

Query:   156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAM-RAVVGLAEGVALPAMNNMV 214
                   GG+ ++     LWS   FL P   D + + LL + R +VG+A+G   P+++ ++
Sbjct:    68 WAAQKIGGRKVLLLSFVLWSSTCFLVP--LDPNRVGLLVVARLLVGVAQGFIFPSIHTVL 125

Query:   215 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS 274
             A+W P  ER+R V+I   G   G A+G+ L P L+   G    F+   L+G +W L+W+ 
Sbjct:   126 AQWVPPHERSRLVSITTSGMYLGAALGMWLLPALVELRGPESVFLAEALAGVIWSLLWIR 185

Query:   275 ATSSTP-DRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN 333
               +  P   HP+ +       L     P  + N HK   +  P+++++  +P W+I+V N
Sbjct:   186 YATDPPRSEHPKAAAAGFGGALL----PTNV-NHHKVTHI--PWKKIMLSLPVWAIVVNN 238

Query:   334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI-QRGT 392
                 +  +V+++W+P YF     I L+       VP+  M     +GG ++D LI +R  
Sbjct:   239 FTFHYALYVLMNWLPTYFELGLQISLQGMDSSKMVPYLNMFVFSIVGGFIADYLITKRIL 298

Query:   393 SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP 452
             SVT TRK L ++GF+    AL+ L   ++        ++A+G  +   +GF VN  +IAP
Sbjct:   299 SVTRTRKFLNTVGFLIASAALMVLPMFRTENGVILCSSVALGFLALGRAGFAVNHMDIAP 358

Query:   453 QYSGVLHGISNTAGTFAAILGTVGAGFFVE 482
             +Y+G++ G+SNTAGT A I+G    G  +E
Sbjct:   359 RYAGIVMGVSNTAGTLAGIIGVDLTGKLLE 388

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 120/350 (34%), Positives = 188/350 (53%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W+    G +  SF +GY+++ I GG +    GGK+++ +G+   S+ T LTP AAD  + 
Sbjct:   103 WNAETQGWILGSFFYGYIITQIPGGYIASRSGGKLLLGFGILGTSVFTLLTPLAADFGVG 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI--AMGGFTSGNAIGLVLSPIL 248
             AL+A+RA+ GL EGV  PAM+ M + W P  ER++ ++I  A+ G   G  + L LS I+
Sbjct:   163 ALIALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAVLGAQLGTVVSLPLSGII 222

Query:   249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKH 308
                      F +FGL G +W ++W    S TPD H  IS YE EYIL   +  L   +  
Sbjct:   223 CFYLNWTYVFYLFGLVGIIWFILWTWLVSDTPDTHRTISPYEKEYILSSLRNQL---SSQ 279

Query:   309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV 368
             K    IP    +L  +P W+I+VA+  ++W F+ +L+ +P Y   V   ++++  + SAV
Sbjct:   280 KSVPWIP----MLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAV 335

Query:   369 PWSVMAFTGYLGGLLSDMLIQRGTSVTL-TRKILQSIGFIAPGIALI--GLTAAKSPVMA 425
             P+        L G  +D L  +    TL  R++   IG   P + L+  G        +A
Sbjct:   336 PYFGCWVCMILSGQAADNLRAKWNFSTLCVRRVFSLIGMFGPAVFLVAAGFIGCDYS-LA 394

Query:   426 SAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 475
              A+LT++  +  F  SGF ++  +IAP Y+G+L GI+NT  T   ++G V
Sbjct:   395 VAFLTISTTLGGFCSSGFSISHLDIAPSYAGILLGITNTFATIPGMIGPV 444

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 112/348 (32%), Positives = 187/348 (53%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W     G +  SF +GY+V+ I GG +    GGK+++  G+   ++ T  TP AAD  ++
Sbjct:   103 WDAETQGWILGSFFYGYIVTQIPGGYMASRIGGKLLLGLGILGTAVFTLFTPLAADLGVV 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS 250
             AL+ +RA+ GL EGV  PAM+ M + W P  ER++ + I+  G   G  I L LS I+  
Sbjct:   163 ALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGIICY 222

Query:   251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP 310
                    F +FGL G +W ++W+   S TP+ H  IS YE EYI+   +  L   +  K 
Sbjct:   223 YMNWTYVFYLFGLVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQL---SSQK- 278

Query:   311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 370
                + P+  +L  +P W+I+VA+  ++W F+ +L+ +P Y   +   ++++  + SA+P+
Sbjct:   279 ---VVPWVSILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSALPY 335

Query:   371 SVMAFTGYLGGLLSDML-IQRGTSVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASA 427
                     + G  +D L ++   S    R+I   IG + P + L+  G        +A A
Sbjct:   336 FGCWLCMIVCGQAADYLRVKWNFSTISVRRIFSLIGMVGPAVFLVAAGFIGCDYS-LAVA 394

Query:   428 WLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 475
             +LT++  +  F+ SGF +N  +IAP Y+G+L GI+NT  T   ++G +
Sbjct:   395 FLTISTTLGGFASSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPI 442

GO:0005764 "lysosome" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO;IDA

GO:0015739 "sialic acid transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA;ISO

MGI|MGI:1924105 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Mus musculus (taxid:10090)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 111/348 (31%), Positives = 185/348 (53%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W     G +  SF +GY+V+ I GG +    GGK+++  G+   S+ T  TP AAD  ++
Sbjct:   103 WDAETQGWILGSFFYGYIVTQIPGGYIASRVGGKLLLGLGILGTSVFTLFTPLAADLGVV 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS 250
              L+ +RA+ GL EGV  PAM+ M + W P  ER++ + I+  G   G  I L LS I+  
Sbjct:   163 TLVVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGIICY 222

Query:   251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP 310
                    F +FG+ G +W ++W+   S TP+ H  IS YE EYI+   +  L   +  K 
Sbjct:   223 YMNWTYVFYLFGIVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQL---SSQK- 278

Query:   311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 370
                + P+  +L  +P W+I+VA+  ++W F+ +L+ +P Y   +   ++++  + SA+P+
Sbjct:   279 ---VVPWGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRFNVQENGFLSALPY 335

Query:   371 SVMAFTGYLGGLLSDML-IQRGTSVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASA 427
                     L G  +D L ++   S    R+I   +G + P + L+  G        +A A
Sbjct:   336 FGCWLCMILCGQAADYLRVKWNFSTISVRRIFSLVGMVGPAVFLVAAGFIGCDYS-LAVA 394

Query:   428 WLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 475
             +LT++  +  F+ SGF +N  +IAP Y+G+L GI+NT  T   + G +
Sbjct:   395 FLTISTTLGGFASSGFSINHLDIAPSYAGILLGITNTFATIPGMTGPI 442

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISO

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 114/350 (32%), Positives = 185/350 (52%)

Query:   129 HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS 188
             + W     G +  SF +GY+++ I GG L    GGK+++ +G+   S+ T LTP AAD  
Sbjct:    90 YSWDADTQGWILGSFFYGYIITQIPGGYLASKIGGKLLLGFGIFGTSVFTLLTPLAADLG 149

Query:   189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL 248
             +  L+A+RA+ GL EGV  PAM++M + W P  ER++ ++I+  G   G  + L LS ++
Sbjct:   150 VGYLIAVRALEGLGEGVTFPAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGLI 209

Query:   249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKH 308
                      F IFG  G LW   W+   S  P+ H  IS+ E EYIL   +  L   +  
Sbjct:   210 CYYMNWVYVFYIFGALGVLWFFFWMWLVSDKPETHKSISRIEREYILSSLKDQL---STQ 266

Query:   309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV 368
             K      P+R +L  +P W+I+VA+  ++W F+ +L+ +P Y   +   D ++  + SA+
Sbjct:   267 KSV----PWRPILESLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFDAQENGFLSAL 322

Query:   369 PWSVMAFTGYLGGLLSDMLIQRGT-SVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMA 425
             P+        L G ++D L ++   S    RK    IG I P + L+  G        +A
Sbjct:   323 PYFGCWLCIILSGQIADHLREKQNFSTVCVRKCFTLIGMIGPAVFLVAAGFIGCNYE-LA 381

Query:   426 SAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 475
              A++T++  +  F  SG+ +N  +IAP Y+G+L GI+N+  T   ++G V
Sbjct:   382 VAFVTISTTLGGFCTSGYSINHLDIAPSYAGILLGITNSFATIPGMVGPV 431

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W0H5	PHT43_ORYSJ	No assigned EC number	0.7162	0.8155	0.8265	yes	no
Q66GI9	ANTR4_ARATH	No assigned EC number	0.7296	0.9163	0.9043	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	526
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	9e-49
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	7e-37
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-28
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-25
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	8e-17
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	3e-13
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-10
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	9e-08
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	2e-07
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-07
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	1e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-05
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	4e-05
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	1e-04
TIGR00712	438	TIGR00712, glpT, glycerol-3-phosphate transporter	2e-04
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	3e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	5e-04
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	0.002

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  174 bits (443), Expect = 9e-49
 Identities = 116/441 (26%), Positives = 195/441 (44%), Gaps = 37/441 (8%)

Query: 104 LALALALCN----ADRVVMSVAIV------------------PLSLAHGWSRSFSGIVQS 141
           L+  L +CN    A R+ +S+ +V                   L      +  +SG +Q 
Sbjct: 20  LSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQG 79

Query: 142 SFLWGYLVSPIAGGTLVDYYGGKIIMAW----GVALWSLATFLTPWAADTSLLALLAMRA 197
             L  +    I     V Y  GK +  W    G+ L S+ + + PWAA   +  ++  R 
Sbjct: 80  LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRV 139

Query: 198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQAGIFG 256
           + GLA+G   PA + ++ +W P  ER+R + ++  GF  G  I L +S  L  S  G   
Sbjct: 140 IQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPM 199

Query: 257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP 316
            F +FG+ G  W L+W    +  P  HP ISK+E +YI    Q       +  P   IP 
Sbjct: 200 IFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIP- 258

Query: 317 FRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFT 376
                  +P W+I  A   H W + ++ +++P + ++V  +  ++    S++P+      
Sbjct: 259 -----KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLC 313

Query: 377 GYLGGLLSDMLIQRGT-SVTLTRKILQSIGFIAPGIALI-GLTAAKSPVMASAWLTLAIG 434
               G L+D L    T S+T  RKI   IG + PGI        + +  +    LTLA  
Sbjct: 314 SIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANA 373

Query: 435 MKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVEL--VGSFQGFLL 492
           + S   +G L+N  ++AP++ G + GI+   G    ++ +  AG  +       +    L
Sbjct: 374 VSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFL 433

Query: 493 LTSLLYFLSALFYIIFSTGER 513
           + + +  L  +FY+IF + ER
Sbjct: 434 IMAFVNILCVIFYLIFGSAER 454

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  140 bits (355), Expect = 7e-37
 Identities = 107/408 (26%), Positives = 178/408 (43%), Gaps = 15/408 (3%)

Query: 106 LALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI 165
           L   +   DR  +S A   L    G S +  G V S+F WGY+V    GG L+D +G + 
Sbjct: 1   LVTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK 60

Query: 166 IMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERAR 225
            +A  + +W + T L   A   + ++L  +R ++G AE    P +  +VA WFP +ERA 
Sbjct: 61  TLAVFIVIWGVFTGLQ--AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERAT 118

Query: 226 AVAIAMGGFTSGNAIGLVL-SPILMSQAGIFG---PFVIFGLSGFLWVLVWLSATSSTPD 281
           AV+I    F S   +G ++  P++      F     F+I G+ G +W ++WL      P 
Sbjct: 119 AVSI----FNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWL-KFIPDPP 173

Query: 282 RHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF 341
           +  +    E +YI            K          + LL     W + +   + + G  
Sbjct: 174 QKAKWLTEEEKYI-VVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLG 232

Query: 342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKIL 401
             L+W P Y      + + +A + +++P  V      LGG LSD+L++RG S+   RK  
Sbjct: 233 FFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARK-T 291

Query: 402 QSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYS-GVLHG 460
             I  +   + +        P  A A + L          G+ + + + AP    G+  G
Sbjct: 292 AIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWAL-ISDNAPGNIAGLTGG 350

Query: 461 ISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 508
           + N+ G    I+G +  G      GSF G L++ + L  + AL Y++ 
Sbjct: 351 LINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  115 bits (291), Expect = 2e-28
 Identities = 103/409 (25%), Positives = 172/409 (42%), Gaps = 59/409 (14%)

Query: 101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY 160
           + +L L   L   DR ++S A+  L+   G S S +G++ S+F  GY +  +  G L D 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 161 YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQ 220
           +G + ++  G+ L++L + L  +A  +SL  LL  R ++GL  G   PA   ++A WFP 
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 221 TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP 280
            ER RA+ +   GF  G  +G +L  +L    G    F+I  + G L  L+         
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL-------- 170

Query: 281 DRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF 340
                                                  L        + +A  + S+G+
Sbjct: 171 ---------------------------------------LFLLRLLLLLALAFFLLSFGY 191

Query: 341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKI 400
           + +L+++P+Y   V  +   +A    ++          LGGLLSD L          R++
Sbjct: 192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG--------RRRL 243

Query: 401 LQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLH 459
           L  IG +   + L+ L  A S  +    L L      F+    L    E+AP +  G   
Sbjct: 244 LLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTAS 303

Query: 460 GISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 508
           G+ NT G+    LG + AG  ++  G + G  L+ + L  L+AL  ++ 
Sbjct: 304 GLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  107 bits (269), Expect = 1e-25
 Identities = 86/373 (23%), Positives = 152/373 (40%), Gaps = 28/373 (7%)

Query: 103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG 162
           +   A        ++     + L+   G S +  G++ ++F  GY ++    G L D +G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 163 GKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE 222
            + ++  G+ L++L   L  +A+  SL  LL +R + GL  G   PA   ++A WFP  E
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFAS--SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118

Query: 223 RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDR 282
           R RA+ +   GF  G A+G +L  +L S  G    F+I  +   L  ++           
Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL-------- 170

Query: 283 HPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV 342
                      + R   +        +    + P  +LL + P   +++A  +  + FF 
Sbjct: 171 ----------LLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFA 220

Query: 343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ 402
           +L+++P+Y   V  +    A     +   + A    L G LSD L +R       R +L 
Sbjct: 221 LLTYLPLY-QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRR------RRLLLA 273

Query: 403 SIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGI 461
            +  I   + L  L+  +S +     L L               + ++AP +  G   G+
Sbjct: 274 LLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGL 333

Query: 462 SNTAGTFAAILGT 474
            NTAG+    LG 
Sbjct: 334 YNTAGSLGGALGP 346

Length = 346

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 82.0 bits (203), Expect = 8e-17
 Identities = 77/392 (19%), Positives = 143/392 (36%), Gaps = 26/392 (6%)

Query: 109 ALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA 168
           A     R   ++A+  L    G S++  G++ SSF   Y +S    G++ D    ++ + 
Sbjct: 5   AAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLP 64

Query: 169 WGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVA 228
            G+ L ++      ++  TSL  + A+ A+ G+ +G+  P     V +WF ++ER   V+
Sbjct: 65  IGLILCAIVNLFFGFS--TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVS 122

Query: 229 IAMGGFTSGNAIGLVLSPILMSQAGIFGP----FVIFGLSGFLWVLVWLSATSSTPDRHP 284
                   G  +   L P+++            F++ G+   +  L+       +P +  
Sbjct: 123 FWNCSHNVGGGL---LPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP-QSC 178

Query: 285 QISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL 344
            +   E                +     +    + +L     W I +           IL
Sbjct: 179 GLPPAEEMPNEEPDGDAEKKEEELTKKQIF--LQYVLLNKVLWYISLGYVFVYVVRTGIL 236

Query: 345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTG-YLGGLLSDMLIQ-RGTSVTLTRKILQ 402
            W P+Y          +ASW   +   +    G  L G LSD L   R   + +    L 
Sbjct: 237 DWSPLYLTQEKGFSKEKASWAFTLY-ELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMAL- 294

Query: 403 SIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ--EIAPQYS-GVLH 459
               I   + +  L  A +P+M    L  A+G   +     L+ +   E+AP+ + G   
Sbjct: 295 ----IIVSLLVYWLNPAANPLMDLICL-FALGFLVYG-PQMLIGVIASELAPKKAAGTAA 348

Query: 460 GISNTAGTFAAILGTVGAGFFVELVGSFQGFL 491
           G          IL  +  G+  +  G + G  
Sbjct: 349 GFVGFFAYLGGILAGLPLGYLADGFG-WAGAF 379

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 71.5 bits (176), Expect = 3e-13
 Identities = 88/422 (20%), Positives = 154/422 (36%), Gaps = 57/422 (13%)

Query: 119 SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT 178
           ++A+  L    G S++  GI+ S+F   Y VS    G L D    +  MA+G+ L ++  
Sbjct: 49  NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN 108

Query: 179 FLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGN 238
            L  +    SL     +  + G  +G+  P     +  WF + ER    +I    + + +
Sbjct: 109 IL--FGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSI----WNTSH 162

Query: 239 AIGLVLSPILMSQAGIF------GPFVIFGLSGFLWVLVWLSATSSTPDR--HPQISKYE 290
            IG  L+P++   A           F   G+   +  L+ L      P     P I +Y 
Sbjct: 163 NIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYR 222

Query: 291 LEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPT----WSIIVANAMHSWGFFV---- 342
            + +   ++         K    +  ++  +  +      W + +AN       FV    
Sbjct: 223 GDPLEIYEE--------EKENEGLTAWQIFVKYVLKNKLIWLLALAN------VFVYVVR 268

Query: 343 --ILSWMPIYFNFVYHIDLRQASW-FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRK 399
             I  W P+Y + V    L +A+W  S    + +  T  L G LSD L +        R 
Sbjct: 269 YGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGT-LLAGWLSDKLFKG------RRG 321

Query: 400 ILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAI-GMKSFSHSG--FLVNLQ--EIAP-Q 453
            +  I  +    +L+    A +    S  L   +  +  F   G   L+ L   E  P +
Sbjct: 322 PMALIFMLLITASLVLYWLAPN---GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKK 378

Query: 454 YSGVLHGISNTAG-TFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGE 512
            +G   G          A L  +  G+  +  G   GF++L+     L+ L  +     E
Sbjct: 379 AAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAA-LLAILLLLPVWNAE 437

Query: 513 RV 514
             
Sbjct: 438 ER 439

Length = 448

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 60/265 (22%), Positives = 105/265 (39%), Gaps = 13/265 (4%)

Query: 95  SERVKVVSMLALALALCN-ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIA 153
           S       +L+  + L +  D   M  A   +S   G      G + S+ L G     + 
Sbjct: 12  SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALF 71

Query: 154 GGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 213
            G L D  G + ++ W + L+S+ T L   A  T++  LL +R + GL  G  +P +N +
Sbjct: 72  FGPLADRIGRRRVLLWSILLFSVFTLLCALA--TNVTQLLILRFLAGLGLGGLMPNLNAL 129

Query: 214 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL-SGFLWVLVW 272
           V+ + P+  R  AV +   G+  G A+G  L+  L+   G    F + G+    L +L+ 
Sbjct: 130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM 189

Query: 273 LSATSS---TPDRHPQISKYELEYILREKQKPLLMG---NKHKPATVIPPFRRLLSK--- 323
                S      + P+  +  +  I  + Q          K    T    F+ L      
Sbjct: 190 RFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTA 249

Query: 324 MPTWSIIVANAMHSWGFFVILSWMP 348
             T  + +   M   G + + +W+P
Sbjct: 250 RITVLLWLLYFMLLVGVYFLTNWLP 274

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 50.7 bits (122), Expect = 9e-08
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 137 GIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR 196
           G++ + +  G L+     G L D +G K ++  G+ ++ L+T +   A  +++  L+  R
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF--ALSSNITVLIIAR 58

Query: 197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG 256
            + G     AL A   ++A  +P  ER  A+ +   G   G  +G  L  +L    G   
Sbjct: 59  FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Query: 257 PFVIFGL 263
           PF+   +
Sbjct: 119 PFLFLAI 125

Length = 141

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 10/184 (5%)

Query: 114 DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL 173
           DR+ +  A + +    G S +  G+  + F   Y++  I    ++   G +  +A  + L
Sbjct: 23  DRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL 82

Query: 174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGG 233
           W +A+  T +A  T   +L  +R +VG+AE   LP +   +  WFP   RARA A+ M  
Sbjct: 83  WGIASTATMFA--TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIA 140

Query: 234 FTSGNAIGLVLSPILMSQAGIF---GPFVIFGLSGF----LWVLVWLSATSSTPDRHPQI 286
                A+GL+LS  +++  G+    G   +F L GF    L V+ W      +PD+   +
Sbjct: 141 MPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF-WLDDSPDKAKWL 199

Query: 287 SKYE 290
            + +
Sbjct: 200 DEED 203

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 82/421 (19%), Positives = 137/421 (32%), Gaps = 42/421 (9%)

Query: 93  ITSERVKVVSMLALALALC----NADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYL 148
             +   K + +  LALAL          V    + P++   G S   +G + +++  G  
Sbjct: 3   TPATARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVA 62

Query: 149 VSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALP 208
           +       L      + ++   +AL+ ++  L+  A   S   LL  RA+ GLA GV   
Sbjct: 63  LGAPLLALLTGRLERRRLLLGLLALFIVSNLLS--ALAPSFAVLLLARALAGLAHGVFWS 120

Query: 209 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW 268
               + AR  P  +R RA+A+   G T    +G+ L   L     +FG    F     L 
Sbjct: 121 IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL---GQLFGWRATFLAIAVLA 177

Query: 269 VLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWS 328
           +L  L      P                                 +    RLL +     
Sbjct: 178 LLALLLLWKLLPPS----------------------EISGSLPGPLRTLLRLLRRPGVLL 215

Query: 329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI 388
            ++A  +   G F + +++  +   V    +   S               LGG L+D   
Sbjct: 216 GLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLAD--- 272

Query: 389 QRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
                    R+ L +   +     L       SP +A A L L     S +  G    L 
Sbjct: 273 ------RGPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLA 326

Query: 449 EIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 508
            +AP  + +   ++  A      LG    G  ++ +G              L AL   + 
Sbjct: 327 RLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGY--AATGWVGAALLLLALLLALL 384

Query: 509 S 509
           S
Sbjct: 385 S 385

Length = 394

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 69/359 (19%), Positives = 131/359 (36%), Gaps = 39/359 (10%)

Query: 155 GTLVDYYGGKIIMAWGVALWSLATFLTPWA-ADTSLLALLAMRAVVGLAEG---VALPAM 210
           G L D +GG+      + L  +      +A    S   LL +  ++GLA     V +P  
Sbjct: 70  GFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMP-- 127

Query: 211 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL 270
               + +FP+ ++  A+ IA  G   G A+  +++P++    G      + G+      +
Sbjct: 128 --NASFFFPKEKQGLALGIAGAG-NLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184

Query: 271 VWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII 330
             + A     D              R   KP L              + + S   TW + 
Sbjct: 185 AAVLAWLGMNDVPE----------HRASVKPQLP----------AQLKAVFSNKDTWLLS 224

Query: 331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR 390
           +       GF    +++P+Y    + +    A   + +   + A    LGG LSD +   
Sbjct: 225 LLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI--G 282

Query: 391 GTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSG----FLVN 446
           G  VTL   +  ++      +  + LT          ++ + + +  F+  G    F + 
Sbjct: 283 GRRVTLAVFVGMALAA---ALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMI 339

Query: 447 LQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFY 505
              I P+ +G + GI    G        +  G  ++L GS+ G  +L    Y ++ +  
Sbjct: 340 PV-IFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLT 397

Length = 417

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 24/79 (30%), Positives = 35/79 (44%)

Query: 128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT 187
           A   S   SG++ S F  G L+  +  G L D +G K  +  G  L+ +   L  +A   
Sbjct: 40  ACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGK 99

Query: 188 SLLALLAMRAVVGLAEGVA 206
           S   L+  R +VGL  G  
Sbjct: 100 SFYMLIVGRVIVGLGVGGI 118

Length = 449

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 3/141 (2%)

Query: 123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP 182
            PL    G   +   I  +  L G  +S   GG L D +G + +   G  L+ L      
Sbjct: 27  PPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY- 85

Query: 183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL 242
            A   SL AL     +     G+A     N   +WFP  +R  A  I +GG+  G+ I  
Sbjct: 86  -AIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILS 143

Query: 243 VLSPILMSQAGIFGPFVIFGL 263
            L   +++  G+   F+  G+
Sbjct: 144 PLITSVINLEGVPAAFIYMGI 164

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 11/144 (7%)

Query: 124 PLSLAHGWSRSFSGIVQSSFLWGYLVS----PIAGGTLVDYYGGKIIMAWGVALWSLATF 179
           P+   HGW R+    +Q +F    +      PI  G  VD YG +I++ +G  +  L   
Sbjct: 28  PIDATHGWGRA---AIQVAFTLFVVTETWLVPI-EGWFVDKYGPRIVVMFGGIMCGLGWV 83

Query: 180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA 239
           L  +A   SL AL A   V G+  G           +WFP  +R  A  +   GF +G A
Sbjct: 84  LNAYA--DSLPALYAAAVVAGIGAGAVYGTCVGNALKWFPD-KRGLAAGLTAAGFGAGAA 140

Query: 240 IGLVLSPILMSQAGIFGPFVIFGL 263
           + +V    ++  +G    F+ FGL
Sbjct: 141 LTVVPIAAMIKVSGYQAAFMYFGL 164

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 88/416 (21%), Positives = 165/416 (39%), Gaps = 52/416 (12%)

Query: 123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL-- 180
           +P  +  G+S+   G   S+    Y  S    G++ D    ++ +  G+ L +    L  
Sbjct: 50  MPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMG 109

Query: 181 -TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI-----AMGGF 234
             PWA  +S+  +  +  + G  +G+  P     +  W+ Q+ER   V+I      +GG 
Sbjct: 110 FVPWAT-SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGG 168

Query: 235 TSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYI 294
                + L ++      A ++ P +   +       +      S     P I +Y  +Y 
Sbjct: 169 IPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG--LPPIEEYRNDYP 226

Query: 295 --LREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFN 352
               EK +  L   +     V+P   +LL     W I +AN       + +L W P Y  
Sbjct: 227 DDYNEKAEQELTAKEIFMQYVLP--NKLL-----WYIAIANVFVYLLRYGVLDWSPTYLK 279

Query: 353 FVYHIDLRQASW------FSAVPWSVMAFTGYLGGLLSDMLIQ--RGTSVTLTRKILQSI 404
            V H  L ++SW      ++ +P ++      L G +SD + +  RG     T     ++
Sbjct: 280 EVKHFALDKSSWAYFLYEYAGIPGTL------LCGWMSDKVFKGNRG----ATGVFFMTL 329

Query: 405 GFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ--EIAP-QYSGVLHGI 461
             IA  + +  +  A +P++    + + IG   +     L+ L   E+AP + +G   G 
Sbjct: 330 VTIA--VIVYWMNPAGNPLVDMICMIV-IGFLIYGPV-MLIGLHALELAPKKAAGTAAGF 385

Query: 462 SNTAGTFAAILGTVGA----GFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGER 513
           +   G F  + G+V A    G+ V+  G   GF+++         L  ++    +R
Sbjct: 386 T---GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 438

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar [Transport and binding proteins, Other]. Length = 438

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 12/192 (6%)

Query: 104 LALALALCNA-------DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGT 156
           LAL + LC         D     VA   ++   G   +  G   S+ + G L   + GG 
Sbjct: 13  LALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGR 72

Query: 157 LVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR 216
           L D  G K I+   VAL+ L +  T  A D     LL  R + G+  G ALP +  + + 
Sbjct: 73  LADRIGRKRILIVSVALFGLFSLATAQAWDFPS--LLVARLLTGVGLGGALPNLIALTSE 130

Query: 217 WFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWV---LVWL 273
                 R  AV++   G   G A+  V+  +    A     F + G+   L V   + WL
Sbjct: 131 AVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWL 190

Query: 274 SATSSTPDRHPQ 285
             + +       
Sbjct: 191 PESRAFAQAAGA 202

Length = 406

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 14/176 (7%)

Query: 147 YLVSPIAG---GTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE 203
           ++  P  G   G L D +G K +M W +  +S+ T L+  A+   +L L   R +VG+  
Sbjct: 63  FIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTL--SRFIVGMGM 120

Query: 204 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL 263
                  +      +P+  +++A A  + GF  GN I     P      G    F +   
Sbjct: 121 AGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV--- 177

Query: 264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRR 319
            G L VL+ +   +  P+     SK   E  L  K K           ++   F R
Sbjct: 178 -GLLPVLLVIYIRARAPE-----SKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNR 227

Length = 426

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 54/298 (18%), Positives = 105/298 (35%), Gaps = 42/298 (14%)

Query: 155 GTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMV 214
           G LVD +G +      + L ++       A   S   LL +R  +G+A G     M   +
Sbjct: 58  GFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV-QSYSVLLLLRLFIGIAGGSFASCM-PWI 115

Query: 215 ARWFPQTERARAVAIAMGGFTSGNAI-GLVLSPIL--------MSQAGIFGPFVIFGLSG 265
           + +FP+  +  A+ +A G    G  +   V+ PI+        +     +G   +   +G
Sbjct: 116 SFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAG 175

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVI-----PPFRRL 320
            L +   L          P             K     +  K    +V         +  
Sbjct: 176 ILLLPALLIFFVG--ADTP-----------PGKPATGKLSFKGARWSVGTGALGDQLKVF 222

Query: 321 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 380
             +  TW + +  ++    F  + S   ++F   + +    A  ++++   + +    LG
Sbjct: 223 RDRH-TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLG 281

Query: 381 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSF 438
           G +SD L          RK+L S   +A G  L+ L      +++   L + I +   
Sbjct: 282 GAISDRLGGA-------RKLLMSFLGVAMGAFLVVLG-----LVSPLSLAVFIVLFVA 327

[Transport and binding proteins, Anions]. Length = 366

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	526
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK10504	471	putative transporter; Provisional	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
PRK11043	401	putative transporter; Provisional	100.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	100.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK12382	392	putative transporter; Provisional	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	100.0
PRK15011	393	sugar efflux transporter B; Provisional	100.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	100.0
PRK11010	491	ampG muropeptide transporter; Validated	100.0
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
KOG2533	495	consensus Permease of the major facilitator superf	100.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	100.0
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
TIGR00896	355	CynX cyanate transporter. This family of proteins	100.0
PRK10054	395	putative transporter; Provisional	100.0
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	100.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	100.0
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	100.0
PRK11902	402	ampG muropeptide transporter; Reviewed	100.0
PRK09528	420	lacY galactoside permease; Reviewed	99.98
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.98
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.98
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.97
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.97
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.97
TIGR00805	633	oat sodium-independent organic anion transporter.	99.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.97
TIGR00901	356	2A0125 AmpG-related permease.	99.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.97
KOG0569	485	consensus Permease of the major facilitator superf	99.96
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.96
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.96
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.96
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.96
KOG0254	513	consensus Predicted transporter (major facilitator	99.96
KOG2615	451	consensus Permease of the major facilitator superf	99.95
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.95
PTZ00207	591	hypothetical protein; Provisional	99.95
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.95
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.95
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.94
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.94
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.94
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.93
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.92
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.92
PRK09669	444	putative symporter YagG; Provisional	99.92
KOG2563	480	consensus Permease of the major facilitator superf	99.92
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.91
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.91
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.91
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.9
PRK10429	473	melibiose:sodium symporter; Provisional	99.9
PRK09848	448	glucuronide transporter; Provisional	99.9
PF13347	428	MFS_2: MFS/sugar transport protein	99.88
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.88
PRK11462	460	putative transporter; Provisional	99.87
COG2211	467	MelB Na+/melibiose symporter and related transport	99.87
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.84
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.84
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.83
KOG3626	735	consensus Organic anion transporter [Secondary met	99.82
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.79
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.75
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.7
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.68
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.64
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.64
PRK05122	399	major facilitator superfamily transporter; Provisi	99.6
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.59
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.59
PRK09528	420	lacY galactoside permease; Reviewed	99.58
PRK15011	393	sugar efflux transporter B; Provisional	99.56
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.56
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.56
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.55
PRK12382	392	putative transporter; Provisional	99.55
PRK10642	490	proline/glycine betaine transporter; Provisional	99.54
PRK10489	417	enterobactin exporter EntS; Provisional	99.53
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.53
PRK09874	408	drug efflux system protein MdtG; Provisional	99.53
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.52
PRK10054	395	putative transporter; Provisional	99.51
PRK03633	381	putative MFS family transporter protein; Provision	99.51
PRK03545	390	putative arabinose transporter; Provisional	99.5
PRK09705	393	cynX putative cyanate transporter; Provisional	99.49
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.49
PRK03893	496	putative sialic acid transporter; Provisional	99.48
PRK03699	394	putative transporter; Provisional	99.48
TIGR00893	399	2A0114 d-galactonate transporter.	99.48
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.47
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.46
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.46
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.45
KOG3762	618	consensus Predicted transporter [General function	99.44
PRK11663	434	regulatory protein UhpC; Provisional	99.44
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.43
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.43
PRK11010	491	ampG muropeptide transporter; Validated	99.42
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.42
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.42
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.41
TIGR00891	405	2A0112 putative sialic acid transporter.	99.4
PRK12307	426	putative sialic acid transporter; Provisional	99.4
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.4
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.4
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.4
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.39
TIGR00900	365	2A0121 H+ Antiporter protein.	99.38
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.37
PRK10504	471	putative transporter; Provisional	99.37
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.36
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.36
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.36
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.35
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.35
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.35
TIGR00895	398	2A0115 benzoate transport.	99.35
PRK09952	438	shikimate transporter; Provisional	99.34
PRK10091	382	MFS transport protein AraJ; Provisional	99.34
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.34
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.32
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.31
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.31
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.3
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.3
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.3
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.3
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.29
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.29
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.29
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.29
PRK11043	401	putative transporter; Provisional	99.29
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.29
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.29
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.29
PRK15075	434	citrate-proton symporter; Provisional	99.29
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.29
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.28
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.27
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.27
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.26
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.25
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.25
PLN00028	476	nitrate transmembrane transporter; Provisional	99.24
PRK11902	402	ampG muropeptide transporter; Reviewed	99.23
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.22
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.22
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	99.21
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.21
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.2
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.2
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.2
KOG0637	498	consensus Sucrose transporter and related proteins	99.19
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.19
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.19
TIGR00898	505	2A0119 cation transport protein.	99.19
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	99.18
PRK09848	448	glucuronide transporter; Provisional	99.15
KOG0569	485	consensus Permease of the major facilitator superf	99.15
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.13
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.13
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.1
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.1
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.08
KOG3810	433	consensus Micronutrient transporters (folate trans	99.07
PRK10133	438	L-fucose transporter; Provisional	99.07
PRK10429	473	melibiose:sodium symporter; Provisional	99.06
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.05
PF13347	428	MFS_2: MFS/sugar transport protein	99.05
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.05
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.04
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.04
PRK09669	444	putative symporter YagG; Provisional	99.03
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.01
PTZ00207	591	hypothetical protein; Provisional	99.01
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.0
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.99
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.97
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.95
KOG2615	451	consensus Permease of the major facilitator superf	98.94
COG0477	338	ProP Permeases of the major facilitator superfamil	98.93
TIGR00901	356	2A0125 AmpG-related permease.	98.9
TIGR00805	633	oat sodium-independent organic anion transporter.	98.9
KOG3762	618	consensus Predicted transporter [General function	98.86
COG2211	467	MelB Na+/melibiose symporter and related transport	98.85
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.82
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.82
PRK11462	460	putative transporter; Provisional	98.82
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.81
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.79
COG3202	509	ATP/ADP translocase [Energy production and convers	98.76
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.71
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.7
KOG2532	466	consensus Permease of the major facilitator superf	98.67
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.61
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.58
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.57
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.54
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.53
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.52
KOG0254	513	consensus Predicted transporter (major facilitator	98.43
PF12832	77	MFS_1_like: MFS_1 like family	98.4
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.37
KOG2533	495	consensus Permease of the major facilitator superf	98.27
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.22
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.19
KOG3880	409	consensus Predicted small molecule transporter inv	98.13
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.09
PF12832	77	MFS_1_like: MFS_1 like family	98.04
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	98.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.94
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.93
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.76
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.69
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.63
PRK03612	521	spermidine synthase; Provisional	97.62
KOG3097	390	consensus Predicted membrane protein [Function unk	97.59
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.55
PRK03612	521	spermidine synthase; Provisional	97.53
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.22
KOG2563	480	consensus Permease of the major facilitator superf	97.17
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.17
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.11
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.02
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	96.84
KOG3626	735	consensus Organic anion transporter [Secondary met	96.65
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.64
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.57
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.53
COG0477	338	ProP Permeases of the major facilitator superfamil	96.45
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.38
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	95.05
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.93
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.1
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.99
KOG0637	498	consensus Sucrose transporter and related proteins	93.77
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.71
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	92.99
KOG3880	409	consensus Predicted small molecule transporter inv	92.56
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.94
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	91.58
COG4262	508	Predicted spermidine synthase with an N-terminal m	90.65
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	90.37
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	88.6
COG3202	509	ATP/ADP translocase [Energy production and convers	86.98
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	85.54
COG4262	508	Predicted spermidine synthase with an N-terminal m	84.05
KOG3810	433	consensus Micronutrient transporters (folate trans	82.98
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	82.52
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	80.83
PF00909	399	Ammonium_transp: Ammonium Transporter Family; Inte	80.1

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-43  Score=324.38  Aligned_cols=412  Identities=20%  Similarity=0.248  Sum_probs=333.8

Q ss_pred             cccccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHH
Q 009757           90 LEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW  169 (526)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~  169 (526)
                      ++..+++|++++..+++++...++.+..++.+.|.+.++.++|.+|+|++.+++.+.+.++.++.|.++||.++|+.+.+
T Consensus        20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~   99 (448)
T COG2271          20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence            34456778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHH--HH
Q 009757          170 GVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS--PI  247 (526)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~--~~  247 (526)
                      ++++.++..++++++  ++.+.+.++.++.|..+|.-+|++...+..|+++++||+..++++++-++|..+.|++.  ++
T Consensus       100 gLilsai~nil~Gfs--~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~  177 (448)
T COG2271         100 GLILSAIVNILFGFS--PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF  177 (448)
T ss_pred             HHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHH
Confidence            999999999999999  99999999999999999999999999999999999999999999999999999999999  88


Q ss_pred             HHhhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCC-CCCCCchHHHHHcCchH
Q 009757          248 LMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHK-PATVIPPFRRLLSKMPT  326 (526)
Q Consensus       248 l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  326 (526)
                      +..+.+||..|++.++++++..+..++..+|+|++..-.+-+|-.....+..+   ++++.+ ......-++.+++||.+
T Consensus       178 ~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~---~~~~~~~ls~~~i~~~YVL~Nk~i  254 (448)
T COG2271         178 FAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYE---EEKENEGLTAWQIFVKYVLKNKLI  254 (448)
T ss_pred             HHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhh---hhccCCCccHHHHHHHHHHcChHH
Confidence            88888999999999999999999999999999987654333322110000000   011111 11112234678999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHH
Q 009757          327 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF  406 (526)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  406 (526)
                      |.+++..++.+..-+++..|.|.|+.|..|+|...+++..+.+-.+++.|++++||++||+.+.+      |.....+.+
T Consensus       255 W~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr------R~p~~~i~~  328 (448)
T COG2271         255 WLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR------RGPMALIFM  328 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc------cchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999986331      223444444


Q ss_pred             HHHHHHHHhhccCchh-HHHHHHHHHHHHHHhhhhh-hHHHHHHhhcc-cchhhHHHHHHHHHhH-HHHHHHHHHhhhcc
Q 009757          407 IAPGIALIGLTAAKSP-VMASAWLTLAIGMKSFSHS-GFLVNLQEIAP-QYSGVLHGISNTAGTF-AAILGTVGAGFFVE  482 (526)
Q Consensus       407 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~l-g~~~~~~~~g~l~~  482 (526)
                      ++..+++..+...++. ......+++..++...++. ..-....|+.| +..|++.|+...+.++ |...+....|++.|
T Consensus       329 ~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d  408 (448)
T COG2271         329 LLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIAD  408 (448)
T ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEe
Confidence            4444444444433322 2222223333333333333 33455667778 5899999999999999 99999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhcCce
Q 009757          483 LVGSFQGFLLLTSLLYFLSALFYIIFSTGER  513 (526)
Q Consensus       483 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (526)
                      .+| |...|++..+.++++.++++...+.++
T Consensus       409 ~~g-W~g~Fi~~~~~a~l~~lll~~~~~~~~  438 (448)
T COG2271         409 TWG-WDGGFIVLSIAALLAILLLLPVWNAEE  438 (448)
T ss_pred             cCC-CcchHHHHHHHHHHHHHHHHHHHhhcc
Confidence            987 888888888888887777766654433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.4e-41  Score=312.03  Aligned_cols=380  Identities=21%  Similarity=0.254  Sum_probs=316.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHH
Q 009757           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (526)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  175 (526)
                      ..+..++.+.++.|............+|++.+|+|+|..+.|++.++|.++..++.++...+.||+.||++++..+.++.
T Consensus        10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi   89 (394)
T COG2814          10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI   89 (394)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            34666777888888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCch
Q 009757          176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (526)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~  255 (526)
                      ++.++++++  +||+.++++|++.|+..|.+++...++..+..|+++|++++++...+.+++.++|.+++.++.+.+|||
T Consensus        90 ~~n~l~alA--p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR  167 (394)
T COG2814          90 VSNLLSALA--PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWR  167 (394)
T ss_pred             HHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHH
Confidence            999999999  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHH
Q 009757          256 GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM  335 (526)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (526)
                      ..|+..++++++..+..+...|  |++.+                       +++.....+..+++|+|+++...+..++
T Consensus       168 ~~F~~ia~l~ll~~~~~~~~lP--~~~~~-----------------------~~~~~~~~~~~~~l~~p~v~~~l~~t~l  222 (394)
T COG2814         168 ATFLAIAVLALLALLLLWKLLP--PSEIS-----------------------GSLPGPLRTLLRLLRRPGVLLGLLATFL  222 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC--CccCC-----------------------CCCCcchhHHHHHhcCchHHHHHHHHHH
Confidence            9999999999998888888887  21111                       1111222334588999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHh
Q 009757          336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG  415 (526)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (526)
                      ...+.+..++|+.+++++..|++....++....++++..+|+.++|++.|| +.+         ...........+.++.
T Consensus       223 ~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~---------~~l~~~~~l~a~~~l~  292 (394)
T COG2814         223 FMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR---------RALIAALLLLALALLA  292 (394)
T ss_pred             HHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch---------hHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999 554         1222222222232332


Q ss_pred             hc-cCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHH
Q 009757          416 LT-AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLT  494 (526)
Q Consensus       416 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~  494 (526)
                      +. ..++.+.......+.................+..|+.++.+.+++....++|..+|..++|.+.|+.| +....++.
T Consensus       293 l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~~  371 (394)
T COG2814         293 LTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWVG  371 (394)
T ss_pred             HHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHH
Confidence            32 33334444444433222222333334444555667999999999999999999999999999999977 88899998


Q ss_pred             HHHHHHHHHHHHHHhcCce
Q 009757          495 SLLYFLSALFYIIFSTGER  513 (526)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~  513 (526)
                      +.+.+++.++.+...+.++
T Consensus       372 a~l~~~a~~~~~~~~~~~~  390 (394)
T COG2814         372 AALLLLALLLALLSARKDR  390 (394)
T ss_pred             HHHHHHHHHHHHHHHhccc
Confidence            8888888877766544433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=9.8e-40  Score=328.64  Aligned_cols=423  Identities=26%  Similarity=0.491  Sum_probs=330.4

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhh----------------------hcCCccchhhHHHHHHHHHHHHh
Q 009757           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSL----------------------AHGWSRSFSGIVQSSFLWGYLVS  150 (526)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------------~~~~s~~~~g~~~s~~~~~~~~~  150 (526)
                      ..+.|+.+..+++++..+++.++..++...+.+.+                      +++++..+.|++.+.+.+++.++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            45567888899999999999999999999988877                      78999999999999999999999


Q ss_pred             hhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHH
Q 009757          151 PIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIA  230 (526)
Q Consensus       151 ~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~  230 (526)
                      +++.|+++||+|||+++.++.++.+++.+++.++...+++.+++.|+++|++.+...+....++.|++|+++|++++++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999999999999999999999988875542256888999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCC
Q 009757          231 MGGFTSGNAIGLVLSPILMSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHK  309 (526)
Q Consensus       231 ~~~~~~G~~ig~~l~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (526)
                      ..+..+|.++++++++.+.+. .|||+.|++.+++.++..++++...+|+|+..+..+++|++...+...      ++.+
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~------~~~~  246 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQ------GQKG  246 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcc------cccC
Confidence            999999999999999999988 499999999999888877777777777776555444444433322111      1111


Q ss_pred             CCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHh
Q 009757          310 PATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQ  389 (526)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~  389 (526)
                      +.+...+++++++++.+|...+..++.....+.+..|+|.|+++.+|++..+.++..++..++..++.++.|++.||+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~  326 (465)
T TIGR00894       247 STRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKS  326 (465)
T ss_pred             CCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11223468899999999999999999999999999999999999899999999999999999999999999999999987


Q ss_pred             hcCccch-hHHHHHHHHHHHHHHHHHhhcc-CchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHh
Q 009757          390 RGTSVTL-TRKILQSIGFIAPGIALIGLTA-AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGT  467 (526)
Q Consensus       390 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  467 (526)
                      |+..... .++.....+..+.++..+.... ....+..+..+.+..+..+...+.......+..|+..|.+.|+.+..+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  406 (465)
T TIGR00894       327 SKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGF  406 (465)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHH
Confidence            6543322 1222222222222222222222 2233333333444444333334445555667788899999999999999


Q ss_pred             HHHHHHHHHHhhhcccc--chhHHHHHHHHHHHHHHHHHHHHHhcCceeccccccc
Q 009757          468 FAAILGTVGAGFFVELV--GSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAGE  521 (526)
Q Consensus       468 lg~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (526)
                      +++.++|.+.|++.+..  +.|...|.+.+++.+++.++.....+.++++++++++
T Consensus       407 l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~w~~~~~  462 (465)
T TIGR00894       407 IGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSAERQDWAKEEK  462 (465)
T ss_pred             HHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeeecceecCCCCCcc
Confidence            99999999999998754  4588888888888888877776665665555554443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=1.4e-40  Score=334.09  Aligned_cols=402  Identities=17%  Similarity=0.116  Sum_probs=300.5

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHH
Q 009757           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (526)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (526)
                      ..+..+.++.++++.+++.+.++..+++..|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|||+++.++.+
T Consensus        23 ~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~  102 (467)
T PRK09556         23 WFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI  102 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence            34456778888899999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHhhhhh-----ccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHH
Q 009757          173 LWSLATFLTPW-----AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI  247 (526)
Q Consensus       173 ~~~~~~~~~~~-----~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~  247 (526)
                      +.+++.++.++     +  ++++.++++|+++|++.+...+...++++||+|+++|++++++...+.++|.++++++..+
T Consensus       103 ~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~  180 (467)
T PRK09556        103 LSAICMLGFGASLGSGS--VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALW  180 (467)
T ss_pred             HHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHH
Confidence            87777665544     5  7999999999999999999999999999999999999999999999999999999999877


Q ss_pred             HHhhc---CchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCch-HHHHHcC
Q 009757          248 LMSQA---GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP-FRRLLSK  323 (526)
Q Consensus       248 l~~~~---gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  323 (526)
                      +.+..   +||..|.+.+++.++..++.+++.++.|++.+..++++..  .+..... ....+.++....+. .+..+++
T Consensus       181 ~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~  257 (467)
T PRK09556        181 GANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIF--GEPISEE-DKETESTDMTKWQIFVEYVLKN  257 (467)
T ss_pred             HHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcc--cCccchh-hhccccccCcHHHHHHHHHHcC
Confidence            76653   6999999888888777777777667766554332222210  0000000 00000000011111 2347899


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHH
Q 009757          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (526)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (526)
                      |.+|...+..++.+....+...|+|.|+++.+|++..++++..+...++..++.++.|+++||+++|+.       ....
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~-------~~~~  330 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA-------LVAC  330 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch-------HHHH
Confidence            999999999888888888899999999998899999999999999999999999999999999998832       2211


Q ss_pred             HHHHHHHHHHHhhccCchhHHH-HHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhH-HHHHHHHHHhhh
Q 009757          404 IGFIAPGIALIGLTAAKSPVMA-SAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTF-AAILGTVGAGFF  480 (526)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l-g~~~~~~~~g~l  480 (526)
                      .........++.+...++.+.. ...++++.+..+.. ........+..| +.+|++.|+.+...++ |.+++|.+.|++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i  409 (467)
T PRK09556        331 IALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQ-LLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMI  409 (467)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHH-HHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHH
Confidence            1111112112222222333322 22222222221111 122234446666 6999999999999997 779999999999


Q ss_pred             cc------------ccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          481 VE------------LVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       481 ~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      .|            ..| |...|.+..++.+++.+..+.+
T Consensus       410 ~~~~~~g~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        410 ADPTKNGTPIFGYTLTG-WAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             hcccccccccccccccC-hHHHHHHHHHHHHHHHHHHHHH
Confidence            99            455 8999988888888877666655

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=2.3e-39  Score=318.43  Aligned_cols=375  Identities=15%  Similarity=0.124  Sum_probs=293.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHH
Q 009757           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (526)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  175 (526)
                      ++|..+..+.+..+..........+.+|.+.+++|.|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   85 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI   85 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            34544555555444444444455667899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCch
Q 009757          176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (526)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~  255 (526)
                      +++++++++  ++++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|++++.+.+..|||
T Consensus        86 ~~~~~~~~~--~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~  163 (390)
T PRK03545         86 ASHVLSALA--WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWR  163 (390)
T ss_pred             HHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHH
Confidence            999999999  999999999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHH
Q 009757          256 GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM  335 (526)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (526)
                      +.|++.+++.++..+..+...|+.+++++                           ...++.++.+|+|.++...+..++
T Consensus       164 ~~f~~~~~~~~l~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~  216 (390)
T PRK03545        164 TTFLAIGGGALITLLLLIKLLPLLPSEHS---------------------------GSLKSLPLLFRRPALVSLYLLTVV  216 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCc---------------------------chHHHHHHHHhCcHHHHHHHHHHH
Confidence            99999998877766665555554332110                           011245678899988877666666


Q ss_pred             HHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHh
Q 009757          336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG  415 (526)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (526)
                      .....+....+.+.++++.+|++..+++.+.+...++.++++++.+++.||+++|         .......+........
T Consensus       217 ~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~---------~~~~~~~~~~~~~~~l  287 (390)
T PRK03545        217 VVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG---------FLLIAIALLLVCLLLL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh---------HHHHHHHHHHHHHHHH
Confidence            6666666778888898887899999999999999999999999999999999876         2222212111111122


Q ss_pred             hccCchhHHHHHHH-HHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHH
Q 009757          416 LTAAKSPVMASAWL-TLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLT  494 (526)
Q Consensus       416 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~  494 (526)
                      ....++.+...... +.+.+. ....+.......+..|+.+++++|+++...++|..+||.+.|.+.|+.| ++..+...
T Consensus       288 ~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~  365 (390)
T PRK03545        288 LPAANSEWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVG  365 (390)
T ss_pred             HHHhchHHHHHHHHHHHHHHH-hcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHH
Confidence            22233333333332 233332 2333444556667778899999999999999999999999999999998 88899888


Q ss_pred             HHHHHHHHHHHHHHhc
Q 009757          495 SLLYFLSALFYIIFST  510 (526)
Q Consensus       495 ~~~~~~~~~~~~~~~~  510 (526)
                      +.+.+++++......+
T Consensus       366 ~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        366 AALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHHHHcc
Confidence            8888887777666544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=2e-39  Score=319.96  Aligned_cols=394  Identities=18%  Similarity=0.215  Sum_probs=297.2

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHH
Q 009757           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (526)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  173 (526)
                      ++.+|+.+..+++.++++++++...+...|.+.+|+|++..++|++.+++.+++.+++++.|++.||+|||+++..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~   82 (412)
T TIGR02332         3 KKLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL   82 (412)
T ss_pred             eeehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence            34578889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh---
Q 009757          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS---  250 (526)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~---  250 (526)
                      .+++.++++++  ++++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|..+++++++++.+   
T Consensus        83 ~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  160 (412)
T TIGR02332        83 WGIASTATMFA--TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG  160 (412)
T ss_pred             HHHHHHHHHHh--cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999  9999999999999999999999999999999999999999999999999999999999998864   


Q ss_pred             ---hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccc---cccCCCC--CCC-CCCchHHHHH
Q 009757          251 ---QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKP---LLMGNKH--KPA-TVIPPFRRLL  321 (526)
Q Consensus       251 ---~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~-~~~~~~~~~~  321 (526)
                         ..|||+.|++.++..++..++.+++.||+|++.+...+++++...+..+..   .+..++.  ++. .....+++++
T Consensus       161 ~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (412)
T TIGR02332       161 LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF  240 (412)
T ss_pred             CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc
Confidence               369999999998888777777777778887664443333332221111100   0000000  000 1112344444


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-hcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHH
Q 009757          322 SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFV-YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKI  400 (526)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~  400 (526)
                       +|.+|...+..++.....+.+.+|+|.++++. .|++..+++.+.....++..++.++.|+++||+++|+       ..
T Consensus       241 -~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~-------~~  312 (412)
T TIGR02332       241 -TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK-------HH  312 (412)
T ss_pred             -ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH-------HH
Confidence             67888888888888888899999999999883 3678888899999999999999999999999998762       11


Q ss_pred             HHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhh
Q 009757          401 LQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGF  479 (526)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~  479 (526)
                      .. ...+...+.+...............+++.........+.......+..| ++|+++.|+.+...++|++++|.+.|.
T Consensus       313 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~  391 (412)
T TIGR02332       313 TA-LPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGI  391 (412)
T ss_pred             HH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            11 1111222222211112222222212221111111112222333344444 799999999999999999999999999


Q ss_pred             hccccchhHHHHHHHHHHH
Q 009757          480 FVELVGSFQGFLLLTSLLY  498 (526)
Q Consensus       480 l~~~~g~~~~~~~~~~~~~  498 (526)
                      +.|..|+|...+.+++++.
T Consensus       392 i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       392 LKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             ccccCCCCchhHHHHHHHH
Confidence            9999888888887766544

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.8e-39  Score=313.79  Aligned_cols=389  Identities=32%  Similarity=0.625  Sum_probs=346.1

Q ss_pred             hhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccc
Q 009757          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (526)
Q Consensus       126 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~  205 (526)
                      ..++++|..+.|++.+.+..|+.+++++.|+++||+|.|+++..+.++.++++++..++...+++.+++.|++||++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            34688999999999999999999999999999999999999999999999999999998667778889999999999999


Q ss_pred             hhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 009757          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP  284 (526)
Q Consensus       206 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (526)
                      .+|+...+.++|.|++||++..++...+..+|.+++.+++|++.+. +||+.+|++.++++++..++++.+..|+|.+++
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence            9999999999999999999999999999999999999999999998 999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhh
Q 009757          285 QISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW  364 (526)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~  364 (526)
                      ...++|++++.+.....      ..++....|++++++++.+|.+.+..++...+.+.+..|+|.|+++++|++..+.|+
T Consensus       225 ~is~~El~~I~~~k~~~------~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~  298 (466)
T KOG2532|consen  225 NISEKELKYIEKGKSEA------HVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGF  298 (466)
T ss_pred             CCCHHHHHHHHhccccc------ccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhH
Confidence            99999988887654322      111115679999999999999999999999999999999999999999999999999


Q ss_pred             HhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCc--hhHHHHHHHHHHHHHHhhhhhh
Q 009757          365 FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK--SPVMASAWLTLAIGMKSFSHSG  442 (526)
Q Consensus       365 ~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  442 (526)
                      +.++..+...+..+++|.++||+.+|....+..|+..-.++..+.++.++.+...+  ..+..+.++.+..+..+...+.
T Consensus       299 ~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~G  378 (466)
T KOG2532|consen  299 LSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISG  378 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhh
Confidence            99999999999999999999999887666777788999999999999888887766  3445666666667777777777


Q ss_pred             HHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhcc-c-cchhHHHHHHHHHHHHHHHHHHHHHhcCceecccccc
Q 009757          443 FLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVE-L-VGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAG  520 (526)
Q Consensus       443 ~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (526)
                      ...-..+..|++.+..+|+.+.+..+.++++|.+.|.+.. . ...|+..|++.+++.+++.+++.++.+.+++++.+.+
T Consensus       379 f~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~w~~~~  458 (466)
T KOG2532|consen  379 FYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGEPAPWTKSE  458 (466)
T ss_pred             hHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCcccCccCCc
Confidence            7777777789999999999999999999999999999994 1 2369999999999999998888777667676666543

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=9.1e-39  Score=317.89  Aligned_cols=404  Identities=18%  Similarity=0.168  Sum_probs=299.3

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHH
Q 009757           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (526)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (526)
                      +.++.......+.++..+++...++..+|.+.+++|.+..+.|++.+.+.+++.+++++.|++.||+|||+++.++.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~   98 (434)
T PRK11663         19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT   98 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence            34556677777888888888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCc
Q 009757          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (526)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw  254 (526)
                      +++.++++++  ++++.+++.|++.|++.|...+...+++.+++|+++|++++++.+.+.++|..+++.+++++.+.+||
T Consensus        99 ~~~~~~~~~~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw  176 (434)
T PRK11663         99 GIINILFGFS--SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGW  176 (434)
T ss_pred             HHHHHHHHHH--hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence            9999999998  99999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChh-HHHHHHHhcccccccCCCCCCCCCCchH-HHHHcCchHHHHHHH
Q 009757          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKY-ELEYILREKQKPLLMGNKHKPATVIPPF-RRLLSKMPTWSIIVA  332 (526)
Q Consensus       255 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  332 (526)
                      |+.|++.+++.++..++..+..+|+|++....... +.+...+..+     +.+.++.+..+.+ +..+++|.+|.+.+.
T Consensus       177 ~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (434)
T PRK11663        177 RYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQ-----QQEGAGLSRKEILTKYVLLNPYIWLLSFS  251 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccch-----hccccCCChhhhHHHHHhcChHHHHHHHH
Confidence            99999988877665555555556655432111100 0000000000     0000001111112 236778999988888


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHH
Q 009757          333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA  412 (526)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (526)
                      .++.......+..|+|.|+++.+|++..+++...+...+++.+++++.|++.||+.+++...   .......+.......
T Consensus       252 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~---~~~~~~~~~~~~~~~  328 (434)
T PRK11663        252 YVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGP---MNLIFAAGILLSVGS  328 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccH---HHHHHHHHHHHHHHH
Confidence            88777788888899999998778999999999999999999999999999999994331100   011112222222222


Q ss_pred             HHhhccCchhHHHHHHHHHHHHHHhhhh-hhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHH
Q 009757          413 LIGLTAAKSPVMASAWLTLAIGMKSFSH-SGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGF  490 (526)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~  490 (526)
                      +..... .+..... ..++..++..... ........+..| +++|++.|+.++..++|.+++|.+.|++.|+.| +...
T Consensus       329 ~~~~~~-~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~~  405 (434)
T PRK11663        329 LWLMPF-ASYVMQA-ACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTGF  405 (434)
T ss_pred             HHHccc-ccHHHHH-HHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHHH
Confidence            222222 2222221 2222222222221 222344566665 799999999999999999999999999999988 8899


Q ss_pred             HHHHHHHHHHHHHHHHHHhcC
Q 009757          491 LLLTSLLYFLSALFYIIFSTG  511 (526)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~  511 (526)
                      |...+++.+++++..+...+.
T Consensus       406 f~~~~~~~~~~~~~~~~~~~~  426 (434)
T PRK11663        406 FVVISIAAGISALLLLPFLNA  426 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            988888877776665554333

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=3.1e-37  Score=316.30  Aligned_cols=405  Identities=16%  Similarity=0.146  Sum_probs=296.9

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHH
Q 009757           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (526)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  173 (526)
                      .+.+|.++++++++.+..+++...++..+|.+.++++++..+.+++.+++.++.+++++++|+++||+|||++++++.++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil  241 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV  241 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            45678888888888898899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-
Q 009757          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-  252 (526)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~-  252 (526)
                      .+++.++++++  ++++.++++|++.|++.|+..+...+++.|++|+++|++.++++..+..+|.++++.++..+...+ 
T Consensus       242 ~~i~~ll~afa--~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       242 NGFFAFFSSFV--QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999998  899999999999999999999999999999999999999999999999999999999887776533 


Q ss_pred             ------------CchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCC-ChhHHHHHHHhccccc-----------------
Q 009757          253 ------------GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQI-SKYELEYILREKQKPL-----------------  302 (526)
Q Consensus       253 ------------gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------------  302 (526)
                                  +||+.+++.++..++. ++..++.||+|+..... +.++.....++.....                 
T Consensus       320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~  398 (742)
T TIGR01299       320 WSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIK  398 (742)
T ss_pred             chhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHH
Confidence                        5888888877765554 44556678887642111 1111111111110000                 


Q ss_pred             ---ccC---C-CCCCC---------------CCCchHHHHHcCc---hHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---
Q 009757          303 ---LMG---N-KHKPA---------------TVIPPFRRLLSKM---PTWSIIVANAMHSWGFFVILSWMPIYFNFV---  354 (526)
Q Consensus       303 ---~~~---~-~~~~~---------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  354 (526)
                         ...   + +....               ..+.+++.+++.+   +.+.+++.+++..++++++..|+|.++++.   
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~  478 (742)
T TIGR01299       399 TIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQAD  478 (742)
T ss_pred             HhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               000   0 00000               0011344555443   356677888888899999999999886541   


Q ss_pred             -h-------------------------------------cC-----C----------------c----------------
Q 009757          355 -Y-------------------------------------HI-----D----------------L----------------  359 (526)
Q Consensus       355 -~-------------------------------------g~-----s----------------~----------------  359 (526)
                       +                                     |+     +                .                
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  558 (742)
T TIGR01299       479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN  558 (742)
T ss_pred             HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence             0                                     00     0                0                


Q ss_pred             ------------------------------------chhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHH
Q 009757          360 ------------------------------------RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (526)
Q Consensus       360 ------------------------------------~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (526)
                                                          ....+...+..++.+++.++.++++||+|||         ..+.
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr---------~~l~  629 (742)
T TIGR01299       559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRL---------RMLA  629 (742)
T ss_pred             cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHH
Confidence                                                0012334556688899999999999999998         3444


Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhcc
Q 009757          404 IGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE  482 (526)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~  482 (526)
                      +++++.+++.+++...++....++..++..++.....+....++.++.| +.|++++|+.++...+|.+++|.+.|.+.+
T Consensus       630 ~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~  709 (742)
T TIGR01299       630 GSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG  709 (742)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555544444444333333334344444556667788889888 699999999999999999999999998887


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009757          483 LVGSFQGFLLLTSLLYFLSALFYIIFSTGE  512 (526)
Q Consensus       483 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (526)
                      . + ...+|++.+++.++++++.+++++++
T Consensus       710 ~-~-~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       710 I-T-KAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             h-h-hHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            5 2 56677777777777776666664433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=2e-37  Score=306.34  Aligned_cols=394  Identities=26%  Similarity=0.418  Sum_probs=306.1

Q ss_pred             HHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhcccc
Q 009757          108 LALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT  187 (526)
Q Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  187 (526)
                      +++.+++...++...|.+.+++|.++.+.|++.+++.++..++.++.|+++||+|||+++.++.++.+++.++++++  +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~   80 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA--G   80 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH--c
Confidence            45667777888999999999999999999999999999999999999999999999999999999999999999998  8


Q ss_pred             chHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 009757          188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (526)
Q Consensus       188 ~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~  267 (526)
                      +++.++++|++.|++.+...+....++.|++|+++|++++++.....++|.++++.+++.+.+..+||+.|++.+++.++
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  160 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII  160 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             HHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhH
Q 009757          268 WVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWM  347 (526)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (526)
                      ..+..++..++++++.+..++++++...+....+  .+.+++++......++.+++|+++...+..++.......+..+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (399)
T TIGR00893       161 WGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAE--QQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWF  238 (399)
T ss_pred             HHHHhhheecCCCCccccCCHHHHhhcchhhccc--cccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            7776666666665544333333222111111100  01112223344567788999999999999999899999999999


Q ss_pred             HHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHH
Q 009757          348 PIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASA  427 (526)
Q Consensus       348 ~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (526)
                      |.|+++.+|.+..+.+++.+...++..++.++.+++.||+++|+....... .......+...+........+..+....
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (399)
T TIGR00893       239 PTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFAR-KTAIIAGLVLSLLMFATNYVNIPYAALA  317 (399)
T ss_pred             HHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH-HHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            999998889999999999999999999999999999999999842111110 1111111112222222222223333333


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 009757          428 WLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYI  506 (526)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  506 (526)
                      ...++.+..+ ..+....+..+..| ++|+++.|+.+.+.++|..++|.+.|.+.|..|++...+.+.+++.+++.+..+
T Consensus       318 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       318 LVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            3333333333 45566666777766 699999999999999999999999999999987788888888777777666554


Q ss_pred             H
Q 009757          507 I  507 (526)
Q Consensus       507 ~  507 (526)
                      .
T Consensus       397 ~  397 (399)
T TIGR00893       397 L  397 (399)
T ss_pred             H
Confidence            3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=4.5e-37  Score=304.37  Aligned_cols=381  Identities=21%  Similarity=0.187  Sum_probs=292.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHH
Q 009757           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (526)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (526)
                      +++|..+.++++..+..+++....++..|.+.+++|.++.+.|++.+.+.++..+++++.|+++||+|||+++.++.++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF   90 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            46788888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCc
Q 009757          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (526)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw  254 (526)
                      .++.+++.+.  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+|
T Consensus        91 ~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  168 (406)
T PRK11551         91 GLFSLATAQA--WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW  168 (406)
T ss_pred             HHHHHHHHHh--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence            9999888888  99999999999999999999999999999999999999999999999999999999999888888899


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcC---chHHHHHH
Q 009757          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK---MPTWSIIV  331 (526)
Q Consensus       255 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  331 (526)
                      |+.|++.+++.++..++..+..||+++..+...++                  ++   .....+..+++   +..+...+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~---~~~~~~~~~~~~~~~~~~~~~~  227 (406)
T PRK11551        169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAG------------------KQ---RAPVLRALFGEGRATATLLLWI  227 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcc------------------hh---hhhhHHHHhhhhhhhHHHHHHH
Confidence            99999988776666665556666654321110000                  00   00011122221   23333444


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHH
Q 009757          332 ANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI  411 (526)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  411 (526)
                      ..++.....+....|.|.|+++ .|++..+.+.+.+...++..+++++.|++.||+++|+         ......+...+
T Consensus       228 ~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~---------~~~~~~~~~~~  297 (406)
T PRK11551        228 SYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR---------VVLLIYAGILA  297 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHH
Confidence            4455555666777889999988 7999999999999999999999999999999999882         22223333333


Q ss_pred             HHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHH
Q 009757          412 ALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGF  490 (526)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~  490 (526)
                      .++.+...++.+......++.........+.......+..| ++|+++.|+.+....++..++|.+.|.+.++.+++...
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~  377 (406)
T PRK11551        298 SLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGV  377 (406)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHH
Confidence            33333333344333322222222222334455556666666 79999999999999999999999999999987767777


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 009757          491 LLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~  508 (526)
                      +.....+.+++.++.+..
T Consensus       378 ~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        378 IGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777766666666555544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=7e-37  Score=306.91  Aligned_cols=391  Identities=17%  Similarity=0.142  Sum_probs=286.6

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHH
Q 009757           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (526)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  176 (526)
                      +++.+...+...+........+.+..|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~  113 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP  113 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            34555566666677777777888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh------
Q 009757          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS------  250 (526)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~------  250 (526)
                      +.++++++  ++++.++++|++.|++.+.. .....+++|++|+++|++++++.....++|..+++.+.+.+..      
T Consensus       114 ~~~~~~~~--~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~  190 (476)
T PLN00028        114 AVFCMSLV--SSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG  190 (476)
T ss_pred             HHHHHHHh--cCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99989988  89999999999999998864 4456789999999999999999988888888877766655432      


Q ss_pred             ---hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHH
Q 009757          251 ---QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW  327 (526)
Q Consensus       251 ---~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (526)
                         ..|||+.|++.+++.++..++.+++.++.|+...    ++.+   +        +.+.++......+++.++++++|
T Consensus       191 ~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~----~~~~---~--------~~~~~~~~~~~~~~~~~~~~~~~  255 (476)
T PLN00028        191 APSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNY----RELK---K--------SGTMPKDSFSKVLRYGVTNYRTW  255 (476)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCch----hhHH---h--------cCccccccHHHHHHHHHcCchhH
Confidence               2489999999999888777666666555443210    0000   0        00001111223456778899998


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHH
Q 009757          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (526)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (526)
                      .+.+..++.......+..++|.|+.+.+|++..+++.+.++..++..++++++|+++||+++|....  .|+........
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~--~r~~~~~~~~~  333 (476)
T PLN00028        256 ILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMR--GRLWALWIVQT  333 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcc--hhHHHHHHHHH
Confidence            8888777766667778889999998878999999999999999999999999999999999873211  12233333333


Q ss_pred             HHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchh
Q 009757          408 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSF  487 (526)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~  487 (526)
                      +.++..+.+....+.+.....+++.........+....+..+..|+++|++.|+.+..+.+|+.++|.+.+  .+..++|
T Consensus       334 l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y  411 (476)
T PLN00028        334 LGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYST  411 (476)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH--hcCCccH
Confidence            33333333333333333332222222222233344455566777889999999998888888888877664  2223458


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 009757          488 QGFLLLTSLLYFLSALFYIIFS  509 (526)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~  509 (526)
                      ...|++.+++.+++.++.++.+
T Consensus       412 ~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        412 ETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHhee
Confidence            8899998888888877776654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=4.9e-37  Score=307.15  Aligned_cols=414  Identities=18%  Similarity=0.246  Sum_probs=290.8

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHH
Q 009757           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (526)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (526)
                      .++++|.++...++.....+.++..++...|.+.++ |++..+.|++.+.+.+++.+++++.|+++||+|||++++++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~  101 (452)
T PRK11273         23 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  101 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHH
Confidence            344556666666677777777777788888999888 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcc--ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHH-HHHHHHHHHH
Q 009757          173 LWSLATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA-IGLVLSPILM  249 (526)
Q Consensus       173 ~~~~~~~~~~~~~--~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-ig~~l~~~l~  249 (526)
                      +.+++.+++++..  ..+++.+++.|++.|++.+...+.....+.+++|+++|+++++++..+.++|.. .+++++..+.
T Consensus       102 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~  181 (452)
T PRK11273        102 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA  181 (452)
T ss_pred             HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            9999988887751  136888999999999999998888888999999999999999999999999864 4555544443


Q ss_pred             hhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchH-HHHHcCchHHH
Q 009757          250 SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF-RRLLSKMPTWS  328 (526)
Q Consensus       250 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  328 (526)
                      ...+||+.|++.+++.++..++.+++.+|+|++....++++.+   .+..... .+++.++.+..+.+ +.++|++.+|.
T Consensus       182 ~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (452)
T PRK11273        182 WFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYK---NDYPDDY-NEKHEQELTAKQIFMQYVLPNKLLWY  257 (452)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhh---hcccccc-ccccCCCccHHHHHHHHHHcChHHHH
Confidence            4459999999998887777666666667766543222111110   0000000 00000111111111 34678899999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHH
Q 009757          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA  408 (526)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  408 (526)
                      ..+..++.+...+....|+|.|+++..|++..+++.......++..++.++.|+++||+++++...    .......+..
T Consensus       258 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~----~~~~~~~l~~  333 (452)
T PRK11273        258 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA----TGVFFMTLVT  333 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcch----HHHHHHHHHH
Confidence            888888888888888999999999988999899999888888999999999999999995431110    0111111111


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHHhhh-hhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHH-HHHHHhhhccccc
Q 009757          409 PGIALIGLTAAKSPVMASAWLTLAIGMKSFS-HSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAIL-GTVGAGFFVELVG  485 (526)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~-~~~~~g~l~~~~g  485 (526)
                      .+...+......+.+..... .+..+..... .........+..| +.+|+++|+.+...++|+.+ +|.+.|++.|+.|
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g  412 (452)
T PRK11273        334 IATIVYWLNPAGNPTVDMAC-MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  412 (452)
T ss_pred             HHHHHHHHhcccChHHHHHH-HHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence            22222222222222222221 1222221111 1222334445555 79999999999999998765 7999999999998


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCceeccc
Q 009757          486 SFQGFLLLTSLLYFLSALFYIIFSTGERVNFD  517 (526)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (526)
                       |...|.+++++.+++++....+.+.++++.+
T Consensus       413 -~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (452)
T PRK11273        413 -WDGGFMVMIGGSILAVILLIVVMIGEKRHHE  443 (452)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence             8889988888888777776666555444433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=7.7e-37  Score=299.98  Aligned_cols=357  Identities=13%  Similarity=0.171  Sum_probs=274.4

Q ss_pred             hhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHH
Q 009757          116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAM  195 (526)
Q Consensus       116 ~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  195 (526)
                      ...++.+|.+.+|+|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.++++++  ++++.+++.
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a--~~~~~ll~~  103 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY--PQSALLLSS  103 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC--cchHHHHHH
Confidence            577899999999999999999999999999999999999999999999999999999999999999999  999999999


Q ss_pred             HHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CchhHHHHHHHHHHHHHHHHHh
Q 009757          196 RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFGPFVIFGLSGFLWVLVWLS  274 (526)
Q Consensus       196 r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~~  274 (526)
                      |+++|++.+...+....++.+++| ++|+++++++..+..+|..+|+.+++++.++. +||..+.+.++..++..+..+.
T Consensus       104 r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  182 (393)
T PRK09705        104 ALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWW  182 (393)
T ss_pred             HHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999997 88999999999999999999999999988875 8999887766655444333333


Q ss_pred             hccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009757          275 ATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFV  354 (526)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (526)
                      ..++.|++++                     ++  +.    ..++.+++++.|...+..++....+.....|+|.|+++ 
T Consensus       183 ~~~~~~~~~~---------------------~~--~~----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-  234 (393)
T PRK09705        183 QSAREVASSH---------------------KT--TT----TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-  234 (393)
T ss_pred             HhcCCCcccc---------------------CC--Cc----CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            2222221100                     00  00    11245567788877777777778888899999999998 


Q ss_pred             hcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHHH
Q 009757          355 YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-AAKSPVMASAWLTLAI  433 (526)
Q Consensus       355 ~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  433 (526)
                      +|.+..+++...+...++.++++++.+++.||+++|+         ....+..+..+....+. ........ ...+.+.
T Consensus       235 ~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~g~  304 (393)
T PRK09705        235 IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRK---------LLMLALVLQLVGFCGFIWLPLQLPVL-WAMVCGL  304 (393)
T ss_pred             cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchH---------HHHHHHHHHHHHHHHHHHccchHHHH-HHHHHHH
Confidence            7999999999999999999999999999999999872         22222222222222221 12222211 1222333


Q ss_pred             HHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009757          434 GMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGE  512 (526)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (526)
                      +.....+...........| +++++..|+.+.+.+++..++|.+.|++.|..|++...|.+.+++.++..++...+..++
T Consensus       305 g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        305 GLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             hccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3333333333333444444 689999999999999999999999999999999888888888887777766655554443


Q ss_pred             e
Q 009757          513 R  513 (526)
Q Consensus       513 ~  513 (526)
                      +
T Consensus       385 ~  385 (393)
T PRK09705        385 F  385 (393)
T ss_pred             c
Confidence            3

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=7.6e-36  Score=292.65  Aligned_cols=367  Identities=15%  Similarity=0.139  Sum_probs=278.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHH
Q 009757           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (526)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  176 (526)
                      .|+.+..+.+..+..........+.+|.+.+++|.++++.|+..+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            45555555555555555555666678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchh
Q 009757          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (526)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~  256 (526)
                      +.+++.++  ++++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|++++.+.+.+|||+
T Consensus        98 ~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~  175 (394)
T PRK10213         98 SCLLVSFA--NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRN  175 (394)
T ss_pred             HHHHHHHH--ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence            99999998  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHH
Q 009757          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (526)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (526)
                      .|++.+++.++..+......||.+++++                           ...+..++.+++|.++...+..++.
T Consensus       176 ~f~~~~~l~~~~~l~~~~~~p~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~~~~~~  228 (394)
T PRK10213        176 VFNAAAVMGVLCIFWIIKSLPSLPGEPS---------------------------HQKQNTFRLLQRPGVMAGMIAIFMS  228 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCcccc---------------------------cchhHHHHHhcCHHHHHHHHHHHHH
Confidence            9999887776655444444444321110                           0112345778899988877766666


Q ss_pred             HHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhh
Q 009757          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (526)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (526)
                      .........++++++.+.+|++....+......+++..++.++.+++.||.+++         .......+.....++..
T Consensus       229 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~---------~l~~~~~~~~~~~~~l~  299 (394)
T PRK10213        229 FAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL---------ALAGAPLVLAVSALVLT  299 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh---------HHHHHHHHHHHHHHHHH
Confidence            666666667764444445799999999999999999999999999999985433         22222222222222222


Q ss_pred             ccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHH
Q 009757          417 TAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSL  496 (526)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~  496 (526)
                      ...++.+......++.+...+...+......++..|++++...++.....++|..+|+.+.|++.|..| +...+...++
T Consensus       300 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-~~~~~~~~~~  378 (394)
T PRK10213        300 LWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG-LTSPLMLSGT  378 (394)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHHHHHHH
Confidence            222334433333333333344555555656666667777888888888999999999999999999987 6677766665


Q ss_pred             HHHHHH
Q 009757          497 LYFLSA  502 (526)
Q Consensus       497 ~~~~~~  502 (526)
                      +.++..
T Consensus       379 ~~~~~~  384 (394)
T PRK10213        379 LMLLTA  384 (394)
T ss_pred             HHHHHH
Confidence            544443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=1.3e-36  Score=293.46  Aligned_cols=359  Identities=12%  Similarity=0.071  Sum_probs=267.7

Q ss_pred             HhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchH
Q 009757          111 CNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL  190 (526)
Q Consensus       111 ~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  190 (526)
                      +......+++.+|.+.+|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....  ++++
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~   80 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP--FNYE   80 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh--ccHH
Confidence            34556688899999999999999999999999999999999999999999999988766655555544433444  6899


Q ss_pred             HHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 009757          191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL  270 (526)
Q Consensus       191 ~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~  270 (526)
                      .++++|+++|++.+. .+.....++|++|+++|++++++...+..+|.++++++++++.+.+|||+.|++.+++.++..+
T Consensus        81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~  159 (368)
T TIGR00903        81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII  159 (368)
T ss_pred             HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence            999999999999986 5566677799999999999999999999999999999999999999999999999988888777


Q ss_pred             HHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009757          271 VWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY  350 (526)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (526)
                      +.++..||+|+++++..  +                   ..+..+++++++++|.+|...+..++....++++.+|+|.|
T Consensus       160 ~~~~~lp~~p~~~~~~~--~-------------------~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~  218 (368)
T TIGR00903       160 LVLAALPALPFQAAEGF--G-------------------FKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAA  218 (368)
T ss_pred             HHHHHcCCCCCCCCCCc--c-------------------hHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777888765432100  0                   00011256789999999999999999999999999999999


Q ss_pred             HHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHH
Q 009757          351 FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLT  430 (526)
Q Consensus       351 ~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (526)
                      +++ .|++.. .+.......+.+.++   .+++.||..|++.+     +..........++.+..+....+.+..+....
T Consensus       219 L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  288 (368)
T TIGR00903       219 LRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLR-----SIYIRAAALLIAAFFLALAFELNRLALFAFIG  288 (368)
T ss_pred             HHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhH-----HHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence            987 688764 555555555555444   57888888765211     11111112222222223232333333333333


Q ss_pred             HHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 009757          431 LAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYI  506 (526)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  506 (526)
                      +...+.....+....+..|..| +.||++.|+.+..+++++..+|.+.+.+..  | ....|.+.++..+++.+...
T Consensus       289 l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~-~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       289 IAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--S-AEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHHHHH
Confidence            3333333444556677888888 699999999999999999999999988884  4 66677777777777666654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.1e-37  Score=281.88  Aligned_cols=387  Identities=18%  Similarity=0.221  Sum_probs=325.8

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHH
Q 009757           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (526)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (526)
                      .++.+++.+.+..+...+++..+.+++++.+.+.+++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.+
T Consensus         8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~   87 (417)
T COG2223           8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSML   87 (417)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHH
Confidence            44556778888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcc-ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 009757          173 LWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ  251 (526)
Q Consensus       173 ~~~~~~~~~~~~~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~  251 (526)
                      +..+-++..+++. .+++|++++++++.|++. ....+....+++|+||+++|.++|++. ..|+|..+...++..+...
T Consensus        88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~  165 (417)
T COG2223          88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA  165 (417)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH
Confidence            9999999888873 245679999999999994 457888999999999999999999999 9999999999999999998


Q ss_pred             cC---chhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCC-chHHHHHcCchHH
Q 009757          252 AG---IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVI-PPFRRLLSKMPTW  327 (526)
Q Consensus       252 ~g---w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  327 (526)
                      .+   |+....+..+..++..+..++...|.|+.+...                        ++.. .+++.++++++.|
T Consensus       166 ~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~------------------------~~~~~~~~~~v~~~~~~W  221 (417)
T COG2223         166 FGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV------------------------KPQLPAQLKAVFSNKDTW  221 (417)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc------------------------cccchhHHHHHhcCcchH
Confidence            89   999999999988888888888887777642211                        0111 5677899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHH
Q 009757          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (526)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (526)
                      .+.+.++..+.++.++..++|.|+++++|.++.+++.+.....+.+.+.++++|+++||+|.+       |.........
T Consensus       222 ~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~-------rv~~~~f~~~  294 (417)
T COG2223         222 LLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR-------RVTLAVFVGM  294 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch-------hHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999988       2233332222


Q ss_pred             HHHHHHHhhccC-----chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhcc
Q 009757          408 APGIALIGLTAA-----KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVE  482 (526)
Q Consensus       408 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~  482 (526)
                      ..+...+.+...     .+.+..+..++....+.+.+....+..+....|++.|.+.|+...++.+|++.-|...|...+
T Consensus       295 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~  374 (417)
T COG2223         295 ALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLD  374 (417)
T ss_pred             HHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHH
Confidence            222222222221     234444444555556667778888888899999999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009757          483 LVGSFQGFLLLTSLLYFLSALFYIIFSTGE  512 (526)
Q Consensus       483 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (526)
                      .+|++...|++...+.+++.+.......++
T Consensus       375 ~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         375 LTGSYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999988888887766654443

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=4.2e-36  Score=295.44  Aligned_cols=379  Identities=16%  Similarity=0.162  Sum_probs=288.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHH
Q 009757           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (526)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  175 (526)
                      ++++.....++.+++.......+++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            45677778888888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh-hcCc
Q 009757          176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAGI  254 (526)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~~gw  254 (526)
                      ++.++++++  ++++.++++|+++|++.+...+...+++.|++|+++|+++++.......+|..++|.+.+.+.. ..+|
T Consensus        84 i~~~l~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw  161 (394)
T PRK03699         84 LAVAGLMFS--HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW  161 (394)
T ss_pred             HHHHHHHHc--chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            999999998  8999999999999999998889999999999999999999999999999999999999888764 5799


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHH
Q 009757          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (526)
Q Consensus       255 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (526)
                      |+.|++.+++.++..++.++.  +.|+..++.++                +.+   ...+    . ..++.++...+..+
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~~--~~p~~~~~~~~----------------~~~---~~~~----~-~~~~~~~~~~~~~~  215 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLFS--EFPALGKHAPK----------------ADK---PVAK----E-KWGIGVLFLAIAAL  215 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--CCccccccCcc----------------ccC---cccc----c-cCChHHHHHHHHHH
Confidence            999999888776655444332  22221110000                000   0000    0 12456667777777


Q ss_pred             HHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHH
Q 009757          335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI  414 (526)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (526)
                      +....++.+..|+|.|+++.+|++..+.+.+.+...++..+++++.+++.||+++|+       ...  ....+..+.+.
T Consensus       216 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~-------~l~--~~~~~~~~~~~  286 (394)
T PRK03699        216 LYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR-------ILT--VLAGLALVLMY  286 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh-------HHH--HHHHHHHHHHH
Confidence            777778888999999998888999999999999999999999999999999999882       122  22222222222


Q ss_pred             hhccCchhHHH-HHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHH
Q 009757          415 GLTAAKSPVMA-SAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLL  493 (526)
Q Consensus       415 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~  493 (526)
                      .+...++.+.. ...+..+. ..+...+.......+..|+.+++..|......++|..++|.+.|++.|..| +...++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~  364 (394)
T PRK03699        287 LFVNTDDPSHLLYAILGLGF-FSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLT  364 (394)
T ss_pred             HHHHcCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhh
Confidence            33223333322 22222332 223334444555666667777888899999999999999999999999988 7778777


Q ss_pred             HHHHHHHHHHHHHHHhcCce
Q 009757          494 TSLLYFLSALFYIIFSTGER  513 (526)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~  513 (526)
                      .+++.+++.+++....+..|
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~  384 (394)
T PRK03699        365 ANGLYAVVFVMCILLGFVSK  384 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            77777776665555544333

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=6.9e-36  Score=301.59  Aligned_cols=394  Identities=16%  Similarity=0.113  Sum_probs=269.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccch-hhH-----HHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHH
Q 009757           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSF-SGI-----VQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGV  171 (526)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~-~g~-----~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  171 (526)
                      ++.+....++.+++++|...++...|.+.++++.+.+. .++     +.++..+++.++++++|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            45667778899999999999999999999998644322 222     247788999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhccccchHH--------HHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHH
Q 009757          172 ALWSLATFLTPWAADTSLLA--------LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLV  243 (526)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~  243 (526)
                      +++++++++++++  ++++.        ++++|+++|++.|+.++...+++.|++|+++|+++.++...+..+|..+|+.
T Consensus        95 ~l~~i~~~~~a~~--~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~  172 (490)
T PRK10642         95 VIMSISTFCIGLI--PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAG  172 (490)
T ss_pred             HHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999  88864        8899999999999999999999999999999999999999988899888887


Q ss_pred             HHHHHH--------hhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCc
Q 009757          244 LSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIP  315 (526)
Q Consensus       244 l~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (526)
                      +...+.        ..+|||+.|++.+++.++. ++.....||+|+....     ++...+..       ++...+....
T Consensus       173 ~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~esp~~~~~-----~~~~~~~~-------~~~~~~~~~~  239 (490)
T PRK10642        173 VVVLISTIVGEANFLDWGWRIPFFIALPLGIIG-LYLRHALEETPAFQQH-----VDKLEQGD-------REGLQDGPKV  239 (490)
T ss_pred             HHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH-HHHHHcCCCChhHHHH-----HHhhhhhc-------cccccccccC
Confidence            765543        2579999999977655543 3333445665432110     00000000       0000011223


Q ss_pred             hHHHHHcC-chHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCc
Q 009757          316 PFRRLLSK-MPTWS-IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS  393 (526)
Q Consensus       316 ~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~  393 (526)
                      ++++++++ ++.+. .....++....++.+..|+|.|+++.+|++..+.++......++..++.++.|+++||+|||+  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~--  317 (490)
T PRK10642        240 SFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP--  317 (490)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--
Confidence            45566653 23222 223334455677888899999998878998888888878888889999999999999999982  


Q ss_pred             cchhHHHHHHHH-HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHH
Q 009757          394 VTLTRKILQSIG-FIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAI  471 (526)
Q Consensus       394 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~  471 (526)
                           ....... ..+....++.....++........++.....+...+....+..+..| +.|+++.|+.+....+++.
T Consensus       318 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~  392 (490)
T PRK10642        318 -----FVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAG  392 (490)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHH
Confidence                 1111111 11111211222222223332222222222222333444555566676 7999999987777778889


Q ss_pred             HHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCce
Q 009757          472 LGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGER  513 (526)
Q Consensus       472 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (526)
                      ++|.+.|++.+..+++...+++..+..+++++..+++++.++
T Consensus       393 ~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~  434 (490)
T PRK10642        393 LTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETAN  434 (490)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccC
Confidence            999999999887654455554555555555555555555443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=1e-35  Score=288.21  Aligned_cols=383  Identities=12%  Similarity=0.105  Sum_probs=290.6

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhh-hcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHH
Q 009757           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGV  171 (526)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  171 (526)
                      .++-.++.+.+..+..++++....++++..+.+.+ ++|+|.+|.+++.+++.+++.++.++.|++.||+|.|+++.++.
T Consensus        28 ~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~  107 (462)
T PRK15034         28 GKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFST  107 (462)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            34445678888888999999999999999999877 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcc---ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 009757          172 ALWSLATFLTPWAA---DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (526)
Q Consensus       172 ~~~~~~~~~~~~~~---~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l  248 (526)
                      ++.++.+++.+++.   .++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+
T Consensus       108 ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~  186 (462)
T PRK15034        108 AILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLV  186 (462)
T ss_pred             HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999888641   26899999999999998 668899999999999999999999999877888887776666553


Q ss_pred             H-----h-------------hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCC
Q 009757          249 M-----S-------------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP  310 (526)
Q Consensus       249 ~-----~-------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (526)
                      .     .             ..+||.++++..++.++..++.++..++.++.                            
T Consensus       187 i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~----------------------------  238 (462)
T PRK15034        187 IFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS----------------------------  238 (462)
T ss_pred             HHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc----------------------------
Confidence            3     2             22377777787777777776666665443321                            


Q ss_pred             CCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhh
Q 009757          311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (526)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (526)
                      +...++.++.+|+|+.|.+.+.+++.+..+.++..++|.|+++.+  +.........+..+...+.++++|+++||+|++
T Consensus       239 ~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~  316 (462)
T PRK15034        239 RASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGV  316 (462)
T ss_pred             ccCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch
Confidence            112245668999999999999999999999999999999998854  333333334445677888999999999999988


Q ss_pred             cCccchhHHHHHHHH-HHHHHHH-HHhhccC--chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhccc-------------
Q 009757          391 GTSVTLTRKILQSIG-FIAPGIA-LIGLTAA--KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-------------  453 (526)
Q Consensus       391 ~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  453 (526)
                      +       ....... ..+.... ...+...  .+.+.....++......+......+-.+...+|+             
T Consensus       317 ~-------vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~  389 (462)
T PRK15034        317 R-------VTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSD  389 (462)
T ss_pred             H-------HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccch
Confidence            2       1222211 1111111 1222211  1233333333333344555666666555555542             


Q ss_pred             ---------chhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCce
Q 009757          454 ---------YSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGER  513 (526)
Q Consensus       454 ---------~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (526)
                               +.|.+.|+....+.+|+++.|.+.|...+..|++...|+...+..++++++.+....++.
T Consensus       390 ~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~~  458 (462)
T PRK15034        390 EQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRRK  458 (462)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence                     678899999999999999999999999999999999999999988888887776644433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=2.9e-36  Score=300.91  Aligned_cols=395  Identities=16%  Similarity=0.135  Sum_probs=288.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHH
Q 009757           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (526)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (526)
                      .++|.++..+++.....+.....++..+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.
T Consensus        15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   94 (455)
T TIGR00892        15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA   94 (455)
T ss_pred             CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence            44677777777777766767677888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHH-HHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC
Q 009757          175 SLATFLTPWAADTSLLALLA-MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (526)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~-~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g  253 (526)
                      +++.++++++  ++++.+++ .|+++|++.+...+...+++.++++ ++|+++.++...+..+|..++|++++.+.+.+|
T Consensus        95 ~~~~~~~~~~--~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g  171 (455)
T TIGR00892        95 SLGMILASFS--SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG  171 (455)
T ss_pred             HHHHHHHHHh--hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence            9999999998  89988865 5799999999877777888999995 899999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCC---CCCCCCCchHHHHHcCchHHHHH
Q 009757          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNK---HKPATVIPPFRRLLSKMPTWSII  330 (526)
Q Consensus       254 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  330 (526)
                      ||++|++.+++.++..+..++..++.+.......+++ +.  .+..........   .++.....++ +++++|.++...
T Consensus       172 wr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  247 (455)
T TIGR00892       172 WRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSK-EG--LPPDGSTKKLSKKSTAEKINRFLDF-SLFTHRGFLVYL  247 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccc-cc--CCCCCccccccccchhhhhhhhcch-HHhcCchHHHHH
Confidence            9999999998877665555554443221110000000 00  000000000000   0000011112 578899999888


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHH--hhcCccchhHHHHHHHHHHH
Q 009757          331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI--QRGTSVTLTRKILQSIGFIA  408 (526)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~--~~~~~~~~~~~~~~~~~~~~  408 (526)
                      +..++...+......++|.|+++ .|++..+++.+.++.+++.++++++.+++.||..  ++       +......+.+.
T Consensus       248 ~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-------~~~~~~~~~~~  319 (455)
T TIGR00892       248 SGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH-------VQYLFSFALLF  319 (455)
T ss_pred             HHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH-------HHHHHHHHHHH
Confidence            88888778888888899999987 7999999999999999999999999999999732  22       12223333333


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhc-ccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchh
Q 009757          409 PGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA-PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSF  487 (526)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~  487 (526)
                      .++.++.....++.+..+...++.+...+...+.......+.. +++++++.|+++...++|.+++|.+.|.+.|..|+|
T Consensus       320 ~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~  399 (455)
T TIGR00892       320 NGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNY  399 (455)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCc
Confidence            3333333333344444333333322233334444555555554 478999999999999999999999999999988778


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 009757          488 QGFLLLTSLLYFLSALF  504 (526)
Q Consensus       488 ~~~~~~~~~~~~~~~~~  504 (526)
                      ...|++.+++.+++.+.
T Consensus       400 ~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       400 KYIFYASGSIVVSAGLF  416 (455)
T ss_pred             chHHHHhhHHHHHHHHH
Confidence            88888887776666553

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=1.8e-35  Score=294.23  Aligned_cols=377  Identities=16%  Similarity=0.115  Sum_probs=268.0

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcC---CccchhhHH---HHHHHHHHHHhhhhhhHHHhHhcChHHHHH
Q 009757           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHG---WSRSFSGIV---QSSFLWGYLVSPIAGGTLVDYYGGKIIMAW  169 (526)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~s~~~~g~~---~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~  169 (526)
                      +++..+...+++.++++++...++...|.+.++++   .+..+.+..   .+...++..++++++|+++||+|||+++.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            45566777788899999999999999999999984   455544444   444455555999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccccchH--------HHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHH
Q 009757          170 GVALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIG  241 (526)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig  241 (526)
                      +.+++++++++++++  +++.        .++++|+++|++.|..++...+++.|++|+++|+++.++...+...|.+++
T Consensus        99 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~  176 (432)
T PRK10406         99 SVCMMCFGSLVIACL--PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA  176 (432)
T ss_pred             HHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence            999999999999998  7653        588999999999999999999999999999999999999998888888888


Q ss_pred             HHHHHHHH--------hhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCC
Q 009757          242 LVLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATV  313 (526)
Q Consensus       242 ~~l~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (526)
                      +.+...+.        ..+|||++|++.+++.++... .....||+++.       +.+            +.+     .
T Consensus       177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~-------~~~------------~~~-----~  231 (432)
T PRK10406        177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQ-------ETR------------ALK-----E  231 (432)
T ss_pred             HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchH-------HHh------------hhc-----c
Confidence            87765543        257999999987776655432 22223333211       000            000     1


Q ss_pred             CchHHHHHcCchHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcC
Q 009757          314 IPPFRRLLSKMPTWSIIVANAM-HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT  392 (526)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~  392 (526)
                      ..++++++++++.+...+...+ ....++.+..|+|.|+++.+|++..+.+....+..++..++.++.|+++||++||+ 
T Consensus       232 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~-  310 (432)
T PRK10406        232 AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT-  310 (432)
T ss_pred             cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-
Confidence            1256788888888776665544 36677788899999998878999888888888888888889999999999999882 


Q ss_pred             ccchhHHHHHHHHHHH--HHHHHHh-hccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhH
Q 009757          393 SVTLTRKILQSIGFIA--PGIALIG-LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTF  468 (526)
Q Consensus       393 ~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l  468 (526)
                            .. .....+.  ....... .......+.......+..+..+...+....+..|..| +.|+++.|+.+..+++
T Consensus       311 ------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~  383 (432)
T PRK10406        311 ------SM-LCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANA  383 (432)
T ss_pred             ------HH-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHH
Confidence                  12 1111111  1111111 1112222322222222222333333455667778887 6899999999988775


Q ss_pred             -HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          469 -AAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       469 -g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                       .+...|.+.+.+ +..|.+...+++.+++.+++.+..++.
T Consensus       384 ~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l  423 (432)
T PRK10406        384 LFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLML  423 (432)
T ss_pred             HHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence             345577777744 556656666666666666666655544

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=5.1e-35  Score=289.36  Aligned_cols=365  Identities=13%  Similarity=0.078  Sum_probs=282.7

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHH
Q 009757           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (526)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  173 (526)
                      +++.+.....+.+..+...+....+.+.+|.+.+++|.+..+.++..+.+.+++.+++++.|+++||+|||+++.++..+
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            45567777777888888888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC
Q 009757          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (526)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g  253 (526)
                      .+++.+++.++  ++++.+++.|+++|++.+...+...+++.|++|+++|.++.++......+|..+||.+++.+.+..+
T Consensus        88 ~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~  165 (406)
T PRK15402         88 FILTCLAILLA--QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP  165 (406)
T ss_pred             HHHHHHHHHHH--ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999998888  8999999999999999998889999999999999999999999998889999999999999999899


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHH
Q 009757          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN  333 (526)
Q Consensus       254 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (526)
                      ||+.|++.+++.++..+..++..||++++.++.                     .+..+..++++.++++|.++...+..
T Consensus       166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (406)
T PRK15402        166 WRGMFVLFAALAALSFFGLWRAMPETAGRVGEK---------------------LSLKELGRDYKLVLKNRRFVAGALAL  224 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc---------------------ccHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            999999988887776665555555543221100                     00011223566889999998887777


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHH--
Q 009757          334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI--  411 (526)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--  411 (526)
                      ++..........+.|.++.+.+|+++.+.+.......++..++.++.+++.||+++|+         ....+.+...+  
T Consensus       225 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~---------~~~~~~~~~~~g~  295 (406)
T PRK15402        225 GLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS---------LIRMGLWPMVAGL  295 (406)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHHHH
Confidence            7766666677778899988888999999898888778888999999999999998872         22222222222  


Q ss_pred             HHHhhc---cCchhHHHHHHHH-HHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchh
Q 009757          412 ALIGLT---AAKSPVMASAWLT-LAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSF  487 (526)
Q Consensus       412 ~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~  487 (526)
                      ..+...   .....++.....+ .+.+. +...+..........++++|++.++.+....++..+|+.+.+.+.+..+.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~  374 (406)
T PRK15402        296 LLAALATVISSHAYLWLTAGLSLYAFGI-GLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNG  374 (406)
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHHH-HHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Confidence            222111   1222333222222 33332 233333334444455689999999999999999999999999999988744


Q ss_pred             HHHH
Q 009757          488 QGFL  491 (526)
Q Consensus       488 ~~~~  491 (526)
                      ...+
T Consensus       375 ~~~~  378 (406)
T PRK15402        375 LFNL  378 (406)
T ss_pred             HHHH
Confidence            4333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=1.6e-35  Score=290.09  Aligned_cols=372  Identities=17%  Similarity=0.165  Sum_probs=280.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhh
Q 009757          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (526)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  180 (526)
                      +....+..+..........+.+|.+.+++|.+..+.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l   84 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM   84 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            44556666777777778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHH
Q 009757          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (526)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~  260 (526)
                      ++++  ++++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..+++++++++.+..+||+.|++
T Consensus        85 ~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         85 FTLS--SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             HHHh--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence            9999  99999999999999999998888899999999999999999999999999999999999999998999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHH
Q 009757          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (526)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (526)
                      .+++.++..+..++..||.+++.+.                          +..+. .+.++++..|...+..++.....
T Consensus       163 ~~~~~~~~~~~~~~~lp~~~~~~~~--------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  215 (382)
T PRK10091        163 IAVFNIAVLASIYFWVPDIRDEAKG--------------------------GLREQ-FHFLRSPAPWLIFAATMFGNAGV  215 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCCCccccc--------------------------CHHHH-HHHhcChHHHHHHHHHHHHHHHH
Confidence            9887776666555555654321100                          00011 24567777777666555555555


Q ss_pred             HHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhh-ccC
Q 009757          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL-TAA  419 (526)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  419 (526)
                      +....++++++++.+|+++.+.+++.+...++..+++++.+++.||+++++         ....+..+..+..+.+ ...
T Consensus       216 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~---------~~~~~~~~~~i~~~~~~~~~  286 (382)
T PRK10091        216 FAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR---------IAAVTDFIIVLALLMLFFFG  286 (382)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh---------HHHHHHHHHHHHHHHHHHHH
Confidence            566677788888778999999999999999999999999999999998872         2222223323322222 112


Q ss_pred             chhHHHHH-HHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHH
Q 009757          420 KSPVMASA-WLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL  497 (526)
Q Consensus       420 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~  497 (526)
                      +..+.... ..+.+.+..+...+......++..+ +.++.+  ..+...++|.++||.+.|.+.|..++|...+...+++
T Consensus       287 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~  364 (382)
T PRK10091        287 GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALL  364 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHH
Confidence            22222222 2223333333333333334444443 344443  3467788999999999999999766699999888777


Q ss_pred             HHHHHHHHHHHhcCc
Q 009757          498 YFLSALFYIIFSTGE  512 (526)
Q Consensus       498 ~~~~~~~~~~~~~~~  512 (526)
                      .++.+.......++|
T Consensus       365 ~~~~~~~~~~~~~~~  379 (382)
T PRK10091        365 SFAAMSSLLLYGRYK  379 (382)
T ss_pred             HHHHHHHHHHHhhhh
Confidence            776666555554443

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=1.2e-35  Score=296.18  Aligned_cols=369  Identities=15%  Similarity=0.154  Sum_probs=270.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHH
Q 009757           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (526)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (526)
                      +.+++.+..+.+.++.+.++.....+..|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~   93 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            45566678888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCc
Q 009757          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (526)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw  254 (526)
                      +++.++++++  ++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.++++.+.+.+.+..+|
T Consensus        94 ~~~~~~~~~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w  171 (426)
T PRK12307         94 SVGTGLSGLA--SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGW  171 (426)
T ss_pred             HHHHHHHHHH--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCH
Confidence            9999999999  99999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHH
Q 009757          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (526)
Q Consensus       255 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (526)
                      |+.|++.++..++ .+......||+++.      ++.+ . ....+    ..+........++++++++|.++.......
T Consensus       172 ~~~f~i~~~~~~~-~~~~~~~~p~~~~~------~~~~-~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (426)
T PRK12307        172 RAAFFVGLLPVLL-VIYIRARAPESKEW------EEAK-L-SGKGK----HSQSAWSVFSLSMKGLFNRAQFPLTLCVFI  238 (426)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHCCCChHH------HHhh-h-hcccc----ccccchhhhhHHHHHHHhhchHHHHHHHHH
Confidence            9999875443322 21111111222110      0000 0 00000    000111112235678888888765443322


Q ss_pred             ---HHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHH
Q 009757          335 ---MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI  411 (526)
Q Consensus       335 ---~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  411 (526)
                         ......+.+..++|.|+++ .|+++...+.+.+...++..+++++.+++.||+++|+         ....+.+...+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~---------~~~~~~~~~~~  308 (426)
T PRK12307        239 VLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK---------TFSIGLLMSFL  308 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH---------HHHHHHHHHHH
Confidence               2223334467889999988 6999999999999999999999999999999999882         22222222222


Q ss_pred             HHHhhc-cCchhHHHHHHHHHHHHHHh-hhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhH
Q 009757          412 ALIGLT-AAKSPVMASAWLTLAIGMKS-FSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQ  488 (526)
Q Consensus       412 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~  488 (526)
                      ..+.+. ........+....++.+... ...+.......+..| +.+|++.|+.+....+++.++|.+.|++.+..| +.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~  387 (426)
T PRK12307        309 FIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LG  387 (426)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HH
Confidence            222211 11122222222222222221 112334455566666 689999999999999999999999999999887 44


Q ss_pred             H
Q 009757          489 G  489 (526)
Q Consensus       489 ~  489 (526)
                      .
T Consensus       388 ~  388 (426)
T PRK12307        388 A  388 (426)
T ss_pred             H
Confidence            3

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=5.8e-36  Score=293.76  Aligned_cols=364  Identities=18%  Similarity=0.188  Sum_probs=277.7

Q ss_pred             HHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhc
Q 009757          105 ALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA  184 (526)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  184 (526)
                      ++...+.......+++..|.+.+++|+++.+.|++.+++.++..+++++.|+++||+|||+++.++.++.+++.++++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~   88 (377)
T TIGR00890         9 TVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA   88 (377)
T ss_pred             HHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH
Confidence            33333444446678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 009757          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLS  264 (526)
Q Consensus       185 ~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~  264 (526)
                        ++++.++++|++.|++.+..++.....+.+++| ++|+++.++...+.++|..+++++.+.+.+..+||+.|++.+++
T Consensus        89 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~  165 (377)
T TIGR00890        89 --DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII  165 (377)
T ss_pred             --HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence              999999999999999999888888889999996 68999999999999999988877777777888999999999988


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHH
Q 009757          265 GFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL  344 (526)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (526)
                      .++..+..++..++++++..+.                    +++......+.++.+++|.++...+..++.........
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (377)
T TIGR00890       166 FLLVIVLGAFLIGYPPGQLIKT--------------------NIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLI  225 (377)
T ss_pred             HHHHHHHHHHheecCchhcccc--------------------CcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHH
Confidence            8877776666655543321100                    00001112245678889998887777777666666666


Q ss_pred             HhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCc--hh
Q 009757          345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK--SP  422 (526)
Q Consensus       345 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  422 (526)
                      .+.+.|.++ +|.+..+.+.+.+...++..+++++.|++.||++||+         ....+.....+..+.....+  ..
T Consensus       226 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  295 (377)
T TIGR00890       226 GLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK---------TMSIVFGISAVGMAAMLFIPMLND  295 (377)
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhHHHHHHHHHHHHHHHcccchh
Confidence            777878766 7888888999999999999999999999999999882         22223333333332222222  22


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHH
Q 009757          423 VMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLS  501 (526)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  501 (526)
                      .......++.....+...+.......+..| ++++++.|+.+....+|..++|.+.|.+.+..| +...|.+.+++.+++
T Consensus       296 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       296 VLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHh
Confidence            222222222222222333344455666665 789999999999999999999999999999887 888888877766655


Q ss_pred             H
Q 009757          502 A  502 (526)
Q Consensus       502 ~  502 (526)
                      .
T Consensus       375 ~  375 (377)
T TIGR00890       375 L  375 (377)
T ss_pred             c
Confidence            4

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=2e-35  Score=298.32  Aligned_cols=375  Identities=18%  Similarity=0.149  Sum_probs=289.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHH
Q 009757           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (526)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  175 (526)
                      ++|..+..+++..++...+....+.++|.+.+++|.+..+.+|+.+.+.++..++.+++|+++||+|||++++++.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            35778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhc-CcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCc
Q 009757          176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (526)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw  254 (526)
                      +++++++++  +|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||.+++++.++.||
T Consensus        83 ~~~~~~~~a--~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw  160 (495)
T PRK14995         83 LASLAAAFS--PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW  160 (495)
T ss_pred             HHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence            999999999  99999999999999999998888888887776 678999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhccCCCCCCCC-CChhHHHH----------HHHhccccccc-------------------
Q 009757          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELEY----------ILREKQKPLLM-------------------  304 (526)
Q Consensus       255 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~~~-------------------  304 (526)
                      |+.|++...+.++..++..+..|+++++..+ .+..+...          ...........                   
T Consensus       161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  240 (495)
T PRK14995        161 GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI  240 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence            9999998888777776666666765443221 11111000          00000000000                   


Q ss_pred             CCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHH
Q 009757          305 GNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLS  384 (526)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~  384 (526)
                      ..+...+.+..+ .+++|+|.++...+..++.....++...++|.|+++.+|+++.++++......++..++.++.|++.
T Consensus       241 ~~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~  319 (495)
T PRK14995        241 RTQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILV  319 (495)
T ss_pred             HHHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            001111222223 3688999988888888888888888889999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCccchhHHHHHHHHHHHHHHHHHhh---ccCchhHHHHH-HHHHHHHHHhhhhhhHHHHHHhhcccchhhHHH
Q 009757          385 DMLIQRGTSVTLTRKILQSIGFIAPGIALIGL---TAAKSPVMASA-WLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHG  460 (526)
Q Consensus       385 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  460 (526)
                      ||+++|         .....+.++..+....+   ...++.+.... .++.+.+.+....+.........++++++.+.+
T Consensus       320 ~r~g~~---------~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~  390 (495)
T PRK14995        320 SRLGLR---------LVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGA  390 (495)
T ss_pred             HHcCch---------HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHH
Confidence            999987         22233333333222221   22233333332 333344444333334444455555689999999


Q ss_pred             HHHHHHhHHHHHHHHHHhhhcc
Q 009757          461 ISNTAGTFAAILGTVGAGFFVE  482 (526)
Q Consensus       461 ~~~~~~~lg~~~~~~~~g~l~~  482 (526)
                      +.++..++|+.+|+.+.|.+.+
T Consensus       391 ~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        391 IETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998865

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=2.5e-35  Score=292.18  Aligned_cols=388  Identities=14%  Similarity=0.128  Sum_probs=276.8

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHH
Q 009757           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (526)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (526)
                      .++++|+.+..+++.++.+.++....++..|.+.+++|.++.+.|++.+++.++..+++++.|+++||+|||+++.++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            34567888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc
Q 009757          173 LWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (526)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~  252 (526)
                      +.+++.+++++.  ++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+..
T Consensus        86 ~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  163 (405)
T TIGR00891        86 LFSAGTLACGFA--PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW  163 (405)
T ss_pred             HHHHHHHHHHHh--ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999998  999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             C--chhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChh-HHHHHHHhcccccccCCCCCCCCCCchHHHHHcC-ch-HH
Q 009757          253 G--IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKY-ELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK-MP-TW  327 (526)
Q Consensus       253 g--w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~  327 (526)
                      +  ||+.|++.++..++..+ .....||+++..+..+++ +.....++..+... ..+...+......++..++ +. +.
T Consensus       164 ~~~w~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  241 (405)
T TIGR00891       164 GDGWRALFFISILPIIFALW-LRKNIPEAEDWKEKHAGKALVRTMVDILYGGEH-RIANIVMTLAAAMVQSAGKRWPTFV  241 (405)
T ss_pred             CccHHHHHHHHHHHHHHHHH-HHHhCCCChhHHHHhhhhhhhhhHHHHHhccch-hhhhhhhhhhHHhhhhhhhhhHHHH
Confidence            6  99999886655544333 333445543211110000 00000000000000 0000000000111111111 11 22


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHH
Q 009757          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (526)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (526)
                      .......+..........++|.|+.+.+|++..+.+.+.+...++..+++++.+++.||+++|+.         ...+.+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~---------~~~~~~  312 (405)
T TIGR00891       242 YLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKA---------YVCSLL  312 (405)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhh---------hHHHHH
Confidence            23333334444555667889999988889999999999999999999999999999999998831         122222


Q ss_pred             HH-HHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccc
Q 009757          408 AP-GIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (526)
Q Consensus       408 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g  485 (526)
                      .. ......+....+.+......++.........+.......+..| ++|+++.|+.+.+.+++..++|.+.|++.|..|
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       313 AGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            22 1111122222333333333222222222333444555666666 799999999999999999999999999999988


Q ss_pred             hhHHHHHH
Q 009757          486 SFQGFLLL  493 (526)
Q Consensus       486 ~~~~~~~~  493 (526)
                      +|...+..
T Consensus       393 ~~~~~~~~  400 (405)
T TIGR00891       393 EYGTALAS  400 (405)
T ss_pred             ccchhHHh
Confidence            77665544

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=1e-33  Score=281.64  Aligned_cols=385  Identities=14%  Similarity=0.070  Sum_probs=269.5

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhcchhh-hhhhc--CCccchhhHHH-----HHHHHHHHHhhhhhhHHHhHhcChH
Q 009757           94 TSERVKVVSMLALALALCNADRVVMSVAIVP-LSLAH--GWSRSFSGIVQ-----SSFLWGYLVSPIAGGTLVDYYGGKI  165 (526)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~--~~s~~~~g~~~-----s~~~~~~~~~~~~~G~l~dr~Grr~  165 (526)
                      ..++++.+....++.++++++...++...|. +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~   95 (438)
T PRK09952         17 LSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKR   95 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHH
Confidence            3445667788888999999999999888775 45555  66665 46554     3455677899999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhccccchH--------HHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhH
Q 009757          166 IMAWGVALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSG  237 (526)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G  237 (526)
                      ++.++.+++++++++++++  ++++        .++++|+++|++.|..++....++.|++|+++|++..+....+..+|
T Consensus        96 ~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G  173 (438)
T PRK09952         96 MLMLTVWMMGIATALIGLL--PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVG  173 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999  8876        58889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--------hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCC
Q 009757          238 NAIGLVLSPILMS--------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHK  309 (526)
Q Consensus       238 ~~ig~~l~~~l~~--------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (526)
                      .+++..+...+..        .+|||.+|++.+++.++.. ......||+|+..      +.+   .+       .++  
T Consensus       174 ~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~-~l~~~~~es~~~~------~~~---~~-------~~~--  234 (438)
T PRK09952        174 LLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIAL-WVRNGMEESAEFE------QQQ---HE-------QAA--  234 (438)
T ss_pred             HHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHH-HHHHhCCCChhHH------HHH---hh-------ccc--
Confidence            9999887776653        4799999998877654422 2222233332210      000   00       000  


Q ss_pred             CCCCCchHHHHHcCchHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHH
Q 009757          310 PATVIPPFRRLLSKMPTWSIIV-ANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI  388 (526)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~  388 (526)
                      .+......+.++++|+.+...+ ..++.....+....|.|.|+++.+|++...........++...++.++.|+++||++
T Consensus       235 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~g  314 (438)
T PRK09952        235 AKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFG  314 (438)
T ss_pred             ccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            0011122334667777666544 445556677778899999998888988776555555667777888999999999999


Q ss_pred             hhcCccchhHHHHHHHHHHHHHHHH--H-h-hccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHH
Q 009757          389 QRGTSVTLTRKILQSIGFIAPGIAL--I-G-LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISN  463 (526)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~  463 (526)
                      ||+       ...  .+.+...+..  + . ....+..+..+...++.....+...+....+..|..| +.|+++.|+.+
T Consensus       315 rr~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~  385 (438)
T PRK09952        315 RRR-------VYI--TGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGY  385 (438)
T ss_pred             chH-------HHH--HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHH
Confidence            882       122  2222111111  1 1 1112223332323333333334445556777788877 68899999976


Q ss_pred             HHHh-HHHHHHHHHHhhhcccc-chhHHHHHHHHHHHHHHHHHHHHHh
Q 009757          464 TAGT-FAAILGTVGAGFFVELV-GSFQGFLLLTSLLYFLSALFYIIFS  509 (526)
Q Consensus       464 ~~~~-lg~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  509 (526)
                      .... +++.++|.+.+++.+.. |+|...+.+.+++.+++.+..+..+
T Consensus       386 ~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~  433 (438)
T PRK09952        386 QVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMK  433 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcc
Confidence            6654 89999999999999865 3477777777777777777666553

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=6.4e-34  Score=287.22  Aligned_cols=373  Identities=13%  Similarity=0.090  Sum_probs=278.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHh
Q 009757          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (526)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~  179 (526)
                      .+.+++++.++..++...+.+.+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            45566777888888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHH
Q 009757          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (526)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~  259 (526)
                      ++.++  ++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.++.|||+.|+
T Consensus        91 ~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         91 FCALS--GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHHHh--CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            88888  8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHH----------HHhccc-ccc------------------cCCCCCC
Q 009757          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYI----------LREKQK-PLL------------------MGNKHKP  310 (526)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~------------------~~~~~~~  310 (526)
                      +......+..+......|+.+.+..+.+.......          ...... ...                  ..+++..
T Consensus       169 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNN  248 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            98877766666666555554433322221111000          000000 000                  0001111


Q ss_pred             CCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhh
Q 009757          311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (526)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (526)
                      .++..+. +++|||.++...+..++..........+.|.|++..+|.++.+.++......++..++.++.+++.||+++|
T Consensus       249 ~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~  327 (471)
T PRK10504        249 NRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR  327 (471)
T ss_pred             CCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            1222233 578999998888888888888777778899999987899999999999888888888889999999999988


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHh--hcc-CchhHHHHH-HHHHHHHHHhhhhhhHHHHHHhh-cccchhhHHHHHHHH
Q 009757          391 GTSVTLTRKILQSIGFIAPGIALIG--LTA-AKSPVMASA-WLTLAIGMKSFSHSGFLVNLQEI-APQYSGVLHGISNTA  465 (526)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~  465 (526)
                      +         ....+..+..+....  ... .+..+.... ..+.+.+. +...+.......+. +++.++.++|+.++.
T Consensus       328 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  397 (471)
T PRK10504        328 R---------VLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVN-STRFSSMNTLTLKDLPDNLASSGNSLLSMI  397 (471)
T ss_pred             H---------HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHhccchHHHHHHH
Confidence            2         222222322222222  211 122222222 22222222 23333444444444 457999999999999


Q ss_pred             HhHHHHHHHHHHhhhccccc
Q 009757          466 GTFAAILGTVGAGFFVELVG  485 (526)
Q Consensus       466 ~~lg~~~~~~~~g~l~~~~g  485 (526)
                      ..+|..+|+.+.|.+.+..|
T Consensus       398 ~~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        398 MQLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999988776

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=5.6e-34  Score=281.48  Aligned_cols=371  Identities=20%  Similarity=0.183  Sum_probs=264.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhcchhh-hhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHH
Q 009757           98 VKVVSMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (526)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  176 (526)
                      ++.+..+.+..++..++..+..+.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++.++.++.++
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~   93 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCAL   93 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHH
Confidence            344555667777777778888888887 5688999999999999999999999999999999999999999999998888


Q ss_pred             HHhhhhhcc------ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 009757          177 ATFLTPWAA------DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (526)
Q Consensus       177 ~~~~~~~~~------~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~  250 (526)
                      +.+++.++.      ..+++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++.+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  173 (399)
T PRK05122         94 SGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH  173 (399)
T ss_pred             HHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            766654431      02567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHH
Q 009757          251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII  330 (526)
Q Consensus       251 ~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (526)
                      ..||+..+++.++..++..+.. .   +.|+..+. + +                       ...++++.++  +++...
T Consensus       174 ~~g~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~-~-~-----------------------~~~~~~~~~~--~~~~~~  222 (399)
T PRK05122        174 WGGLAGLGLLIMLLALLGLLLA-R---PRPAVPPV-K-G-----------------------ERLPFRRVLG--RVWPYG  222 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHH-h---cCCCCCCC-C-c-----------------------cchhHHHHHH--HHHHHH
Confidence            9999998887666544333222 1   11111110 0 0                       0012223333  222222


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHH
Q 009757          331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPG  410 (526)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  410 (526)
                      ....+....+.....+++.|+.+ .|.  .+.+.......++..+++++.+++.||+++|+         ....+..+..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~---------~~~~~~~~~~  290 (399)
T PRK05122        223 MGLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLR---------VAIVSLLVEI  290 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHH---------HHHHHHHHHH
Confidence            33334445566677888888876 465  34566677778888999999999999998772         2223333333


Q ss_pred             HHHHhhccCchhHHHHHHH-HHHHHHHhhhhhhHHHHH-HhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhH
Q 009757          411 IALIGLTAAKSPVMASAWL-TLAIGMKSFSHSGFLVNL-QEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQ  488 (526)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~  488 (526)
                      +....+...++.+...... +.+.+.. ...+...... ...+++++|++.|+++...++|..+++.+.|.+.+..| ++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~  368 (399)
T PRK05122        291 LGLLLLWLAPSPWMALIGAALTGFGFS-LVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YP  368 (399)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HH
Confidence            3333333333443333332 2333333 3333333333 34445799999999999999999999999999999887 88


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCce
Q 009757          489 GFLLLTSLLYFLSALFYIIFSTGER  513 (526)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~  513 (526)
                      ..+.+.+++.+++.++....+++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        369 SIFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccc
Confidence            8988888888877776666544433

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=9e-34  Score=279.48  Aligned_cols=375  Identities=14%  Similarity=0.107  Sum_probs=271.1

Q ss_pred             HHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhh
Q 009757          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (526)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~  183 (526)
                      ..++.++...........++.+.+++|.++.+.|++.+.+.++..+++++.|++.||+|||+++..+.++.+++.+++..
T Consensus        18 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~   97 (402)
T TIGR00897        18 GYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIV   97 (402)
T ss_pred             HHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444334444566777899999999999999999999999999999999999999999999999988765432


Q ss_pred             -cc-ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHH-HHHHHHHHHHHhhcCchhHHHH
Q 009757          184 -AA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGN-AIGLVLSPILMSQAGIFGPFVI  260 (526)
Q Consensus       184 -~~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~ig~~l~~~l~~~~gw~~~f~~  260 (526)
                       .. .++++.+++.|++.|++.+...+...+.+.+++|+++|++++|+...+.++|. .+++++++.+.+..||+..++.
T Consensus        98 ~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897        98 FGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             HhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence             11 15788899999999999988888888889999999999999999999999997 6899999999888897766665


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHH
Q 009757          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (526)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (526)
                      .....++..++.++..++.+++.+.. +                  +++..+..+.++.++++|.++...+..++.....
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (402)
T TIGR00897       178 ALAFVLTGGVIALFSNKDIFTPQHMQ-T------------------REKFSELGKAATILFTNPNVLLGGMVRIINTIGL  238 (402)
T ss_pred             HHHHHHHHHHHHHhccCCCCCccccc-C------------------CcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence            54443333334444444432211100 0                  0001111234667899999998888888888888


Q ss_pred             HHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHH--HHHHHHHHHHHHhhc-
Q 009757          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ--SIGFIAPGIALIGLT-  417 (526)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-  417 (526)
                      +.+..+.|.|+++ +|++..+.+.+.....++..++.++.|++.||+++|+.       ...  .....+..+.+.... 
T Consensus       239 ~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~-------~~~~~~l~~~~~~~~l~~~~~  310 (402)
T TIGR00897       239 FGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT-------VRWFGGVGCGIFTLALYYIPQ  310 (402)
T ss_pred             HHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999977 89999999998888999999999999999999998731       111  111111111111111 


Q ss_pred             -cCchhHHH-HHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHH
Q 009757          418 -AAKSPVMA-SAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTS  495 (526)
Q Consensus       418 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~  495 (526)
                       ..++.+.. ...++.+.+.... .+ ......+..|++||++.|+.+...++++.++|.+.|.+.|..| +...+++.+
T Consensus       311 ~~~~~~~~~~~~~~~~G~~~~~~-~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a  387 (402)
T TIGR00897       311 HFGHSFAVALIIAIALGIFLAGY-VP-LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFA  387 (402)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHH-HH-HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHH
Confidence             12233332 2233333333322 23 3345567788899999999999999999999999999999988 777888877


Q ss_pred             HHHHHHHHHHHHH
Q 009757          496 LLYFLSALFYIIF  508 (526)
Q Consensus       496 ~~~~~~~~~~~~~  508 (526)
                      ++.+++.++..+.
T Consensus       388 ~~~~i~~~~~~~~  400 (402)
T TIGR00897       388 ALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHh
Confidence            7777766665554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=2.1e-34  Score=287.19  Aligned_cols=402  Identities=18%  Similarity=0.250  Sum_probs=285.6

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHH
Q 009757           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (526)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  176 (526)
                      ++..+....+.+...+.++..+....|.+.+ +|+++.+.+++.+++.++..++.++.|+++||+|||+.+.++.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            4666677777778888877777878888776 599999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcc--ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh-hcC
Q 009757          177 ATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAG  253 (526)
Q Consensus       177 ~~~~~~~~~--~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~~g  253 (526)
                      +.+++++..  .++++.+.+.|++.|++.+..++.....+.|++|+++|++++++.+.+.++|..+++.+.+...+ ..+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  183 (438)
T TIGR00712       104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND  183 (438)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence            888776541  14677888999999999999899899999999999999999999999999999999888776544 578


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCch-HHHHHcCchHHHHHHH
Q 009757          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP-FRRLLSKMPTWSIIVA  332 (526)
Q Consensus       254 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  332 (526)
                      ||..|++.+++.++..+..++..||+|++.+..+.++.+   .+..... .++.+.+....+. .+.+++++.+|...+.
T Consensus       184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (438)
T TIGR00712       184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYR---NDYPDDY-NEKAEQELTAKEIFMQYVLPNKLLWYIAIA  259 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcc---ccccccc-ccccccccchHHHHHHHHccCchHHHHHHH
Confidence            999999999888877666666667665432111111000   0000000 0000000011111 2346789999988888


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHH--HH
Q 009757          333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA--PG  410 (526)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~--~~  410 (526)
                      .++.+...+++..++|.|+++..|+++.++++...+..+.+++++++.|++.||+++++..      .........  ..
T Consensus       260 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~------~~~~~~~~~~~~~  333 (438)
T TIGR00712       260 NVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRG------ATGVFFMTLVTIA  333 (438)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc------HHHHHHHHHHHHH
Confidence            7777778888889999999998899999999999999999999999999999999654211      111111111  11


Q ss_pred             HHHHhhccCchhHHHHHHHHHHHHHHhhhhh-hHHHHHHhhcc-cchhhHHHHHHHHHhHHH-HHHHHHHhhhccccchh
Q 009757          411 IALIGLTAAKSPVMASAWLTLAIGMKSFSHS-GFLVNLQEIAP-QYSGVLHGISNTAGTFAA-ILGTVGAGFFVELVGSF  487 (526)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~-~~~~~~~g~l~~~~g~~  487 (526)
                      +..+......+.+..... .+..+....... .......+..| +.+|++.|+.+...++++ +++|.+.|.+.|+.| +
T Consensus       334 ~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~  411 (438)
T TIGR00712       334 VIVYWMNPAGNPLVDMIC-MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-W  411 (438)
T ss_pred             HHHHHhcCCCchHHHHHH-HHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-c
Confidence            111111112222322211 122222211111 11233445555 799999999999988875 689999999999987 8


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Q 009757          488 QGFLLLTSLLYFLSALFYIIFSTG  511 (526)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~  511 (526)
                      ...+.+..++.+++.+..+++.+.
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~  435 (438)
T TIGR00712       412 DGGFMVMIGGSILAVILLIVVMIG  435 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888777777776666655443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=9.3e-35  Score=288.43  Aligned_cols=384  Identities=16%  Similarity=0.116  Sum_probs=277.4

Q ss_pred             HHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhh---
Q 009757          107 ALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW---  183 (526)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~---  183 (526)
                      ..++..+......+.+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+..+.   
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~  104 (417)
T PRK10489         25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF  104 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH
Confidence            34455556667788889999999999999999999999999999999999999999999999988887777655432   


Q ss_pred             ccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 009757          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (526)
Q Consensus       184 ~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~  263 (526)
                      ...++++.+++.|+++|++.+...++..+++.|++|+++|+++.++.....++|..+||.+++.+.+..+|++.|++.++
T Consensus       105 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~  184 (417)
T PRK10489        105 LPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAA  184 (417)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            11267899999999999999888899999999999999999999999999999999999999999998899999998877


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 009757          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (526)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (526)
                      ..++..+..+ ..|+.+++++.                    +++..++..+.++..+++|.++...+..++.. ....+
T Consensus       185 ~~~~~~~~~~-~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  242 (417)
T PRK10489        185 GTFITLLPLL-RLPALPPPPQP--------------------REHPLRSLLAGFRFLLASPVVGGIALLGGLLT-MASAV  242 (417)
T ss_pred             HHHHHHHHHH-hCCCCCCCCcc--------------------cccchHHHHHHHHHHHcChHHHHHHHHHHHHH-HHHhH
Confidence            7665554443 33443221110                    00001111234556778888766655544433 34567


Q ss_pred             HHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhH
Q 009757          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV  423 (526)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (526)
                      ..++|.|+++.+|.+....+++.+...++..++.++.+++.||.+++         ..+..+.++..+.+..+...++.+
T Consensus       243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~  313 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG---------LLMLLSTLGSFLAVGLFGLMPMWI  313 (417)
T ss_pred             HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc---------hHHHHHHHHHHHHHHHHHccchHH
Confidence            78899999998899999999999999999999999999999875443         122233333334444444444444


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHH-HHHHHH
Q 009757          424 MASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTS-LLYFLS  501 (526)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~-~~~~~~  501 (526)
                      ......++.+...+...+....+.++..| +.||+++|+++...++|..++|.+.|.+.|..| +...+...+ +..+++
T Consensus       314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~  392 (417)
T PRK10489        314 LAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIG  392 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHH
Confidence            33333333223333344455566677766 689999999999999999999999999999988 444554444 444455


Q ss_pred             HHHHHHHhcCceecccccccc
Q 009757          502 ALFYIIFSTGERVNFDEAGEF  522 (526)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~  522 (526)
                      ++.....++.++++.+|.+++
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~  413 (417)
T PRK10489        393 VLLLLVLGELRRFRQTPPEVD  413 (417)
T ss_pred             HHHHHhcccccccccccccCC
Confidence            555555555555554444433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=3e-35  Score=288.89  Aligned_cols=372  Identities=19%  Similarity=0.216  Sum_probs=278.7

Q ss_pred             HHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhcc
Q 009757          106 LALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA  185 (526)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~  185 (526)
                      +.++..+.+...++...|.+.+++|.+..+.|++.+++.++..++.++.|+++||+|||+++.++.++.+++.++++++ 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-   80 (379)
T TIGR00881         2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-   80 (379)
T ss_pred             chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-
Confidence            3466777888899999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHH-HHHHHHHhhcCchhHHHHHHHH
Q 009757          186 DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL-VLSPILMSQAGIFGPFVIFGLS  264 (526)
Q Consensus       186 ~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~-~l~~~l~~~~gw~~~f~~~~~~  264 (526)
                       ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ .++..+.+..+||+.|++.+++
T Consensus        81 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (379)
T TIGR00881        81 -TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGII  159 (379)
T ss_pred             -hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence             89999999999999999999999999999999999999999999999999999999 5777777788999999998888


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHH
Q 009757          265 GFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL  344 (526)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (526)
                      .++..++.++..++++++.+..+.++.+.  ++.+.. ..+++++........++++++|.++...+..++.......+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (379)
T TIGR00881       160 AIIVSLICFLLLRDSPQSCGLPPAEEMPN--EEPDGD-AEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGIL  236 (379)
T ss_pred             HHHHHHHHheeeCCCccccccCccccCcc--cccccc-cccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            77766666666666554322111111000  000000 000111112223345678899999998888888888888899


Q ss_pred             HhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhcc--Cchh
Q 009757          345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA--AKSP  422 (526)
Q Consensus       345 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  422 (526)
                      .+.|.|+++.+|++..+.+...+...++..++.++.+++.||..+++.      ..............+.....  ..+.
T Consensus       237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (379)
T TIGR00881       237 DWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR------GPLAVFFMALIIVSLLVYWLNPAANP  310 (379)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc------hHHHHHHHHHHHHHHHHHhcCcchhH
Confidence            999999998889999999999999999999999999999998754421      11111111222222222111  2222


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHH
Q 009757          423 VMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQG  489 (526)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~  489 (526)
                      +......+..................+..| ++|+++.|+.+....+|+.++|.+.|.+.|..| |..
T Consensus       311 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~  377 (379)
T TIGR00881       311 LMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-WAG  377 (379)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc-ccc
Confidence            222222222111122222333445556665 799999999999999999999999999999877 554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=1.3e-33  Score=277.79  Aligned_cols=353  Identities=16%  Similarity=0.173  Sum_probs=270.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHh
Q 009757          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (526)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~  179 (526)
                      .+..+....+........+.+.+|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   85 (385)
T TIGR00710         6 FALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSL   85 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHH
Confidence            34444444566667778888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHH
Q 009757          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (526)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~  259 (526)
                      ++.+.  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+||+.|+
T Consensus        86 ~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  163 (385)
T TIGR00710        86 GLALS--NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA  163 (385)
T ss_pred             HHHHH--ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            99998  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHH
Q 009757          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (526)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (526)
                      +.++..++..+..++..||++++.++.+                      .+...+.+++.+++|+++...+...+....
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (385)
T TIGR00710       164 FLSLAGILLSALIFFILPETLPYEARIQ----------------------ISTYFETFLLLLKSKMFWGYALIYGASFGG  221 (385)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCcccCC----------------------HHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence            9888877766666665555433221100                      011123456788899998887777777777


Q ss_pred             HHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc-c
Q 009757          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-A  418 (526)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  418 (526)
                      ......+.|.++++.+|.++.+.+.+.....++..++.++.+++.||+++|+       ..............++... .
T Consensus       222 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  294 (385)
T TIGR00710       222 FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS-------LLRMGLILFAVSAVLLEITAI  294 (385)
T ss_pred             HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            7788888999998889999999999999999999999999999999999882       2222211111111111111 1


Q ss_pred             -C-chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccc
Q 009757          419 -A-KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVEL  483 (526)
Q Consensus       419 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~  483 (526)
                       . ...........+.....+...+.......+..|++++++.++.+.....++.+.+.+.+.+.+.
T Consensus       295 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~  361 (385)
T TIGR00710       295 LGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIHGN  361 (385)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence             1 1122222222222222333344445555666678899999999999887777777777755443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=1.3e-33  Score=278.44  Aligned_cols=395  Identities=14%  Similarity=0.043  Sum_probs=277.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhh
Q 009757          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (526)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  180 (526)
                      ...+.+..+...+....+.+.+|.+.++++.+..+.++..+++.+++.++++++|+++||+|||++++.+.++.+++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~   97 (413)
T PRK15403         18 PMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAA   97 (413)
T ss_pred             HHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHH
Confidence            33445555667778889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHH
Q 009757          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (526)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~  260 (526)
                      +.++  ++++.++++|+++|++.+...+....++.|++|+++|++++++......+|..+||.+++.+.++.|||+.|++
T Consensus        98 ~~~a--~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~  175 (413)
T PRK15403         98 TLFT--TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI  175 (413)
T ss_pred             HHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999  99999999999999998877777888999999999999999999999999999999999999988999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHH
Q 009757          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (526)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (526)
                      .++..++..+..++..||+++++++                     +.......+++++++|||.++...+..++.....
T Consensus       176 ~~~~~~i~~~~~~~~lp~~~~~~~~---------------------~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~  234 (413)
T PRK15403        176 IAVMGLIAFVGLLLAMPETVKRGAV---------------------PFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPM  234 (413)
T ss_pred             HHHHHHHHHHHHHHhCCCCccccCC---------------------CCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            9888777666555555664332110                     0001112346678899999999888888888888


Q ss_pred             HHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCc
Q 009757          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK  420 (526)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (526)
                      +.+..+.|.++++.+|+++.+.++.......+..++..+.+++.+|..+++...  ....+..++.+....... . ..+
T Consensus       235 ~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~--~~~~~~~ig~~l~~~~~~-~-~~~  310 (413)
T PRK15403        235 MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIW--RAVPIQLVGLALLIVGNL-L-WPH  310 (413)
T ss_pred             HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHH--HHHHHHHHHHHHHHHHHH-H-ccc
Confidence            888889999999988999999999887777777777777776654433321100  000111111111111111 1 122


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Q 009757          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL  500 (526)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  500 (526)
                      ..+......++.....+...+........-.+..+|++.++.+.....+..+++...|++.+..  -...|...+++..+
T Consensus       311 ~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~  388 (413)
T PRK15403        311 VWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNG--GRLPFHLLAVVAGV  388 (413)
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHH
Confidence            2222222222222222223333332222222235899999999999999999999999988773  34444444444333


Q ss_pred             HHHHHHHHhcCceeccccccccccC
Q 009757          501 SALFYIIFSTGERVNFDEAGEFLLL  525 (526)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~  525 (526)
                      .... .+.+..++.+.++..+..|.
T Consensus       389 ~~~~-~~~~~~~~~~~~~~~~~~~~  412 (413)
T PRK15403        389 IVVF-TLAGLLNRVRQHQAAELAEE  412 (413)
T ss_pred             HHHH-HHHHHHhhhhhhhhhhHhhc
Confidence            2222 22233333344444444444

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=1.5e-33  Score=276.37  Aligned_cols=366  Identities=16%  Similarity=0.115  Sum_probs=274.8

Q ss_pred             HHHHHHhhhhhhhhcchhh-hhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHH-HHHHHHHHHhhhhh
Q 009757          106 LALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW-GVALWSLATFLTPW  183 (526)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~-~~~~~~~~~~~~~~  183 (526)
                      +.+++..+......+.+|. +.+++|.|+.+.|++.+++.+...+.+++.|+++||+||||.+++ +.++..++.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   83 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW   83 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence            3456666666777787776 567899999999999999999999999999999999999887654 55666677778888


Q ss_pred             ccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHH--HHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHH
Q 009757          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARA--VAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (526)
Q Consensus       184 ~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~  261 (526)
                      +  ++++.+++.|++.|.+.+...|...+++.|+.|+++|++.  .++...+.++|..+|+.+++.+.+.+|||+.|++.
T Consensus        84 ~--~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~  161 (375)
T TIGR00899        84 N--RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA  161 (375)
T ss_pred             c--chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence            8  8999999999999988888888888999999887777654  67888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHH
Q 009757          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (526)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (526)
                      +++.++..++.++..||.|++.+..                    +     ...+.++.+++|+++...+..++......
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (375)
T TIGR00899       162 ALAFVLCGVLVWLFLPSYPRGAPGA--------------------L-----TRLEVRGLLASRDTRLLFVACTLMWGCNI  216 (375)
T ss_pred             HHHHHHHHHHHHHhCCCcccCcccc--------------------c-----CcchhhhhhcCcchHHHHHHHHHHHHHHH
Confidence            8887777666666666654322100                    0     01123346677777766665555555556


Q ss_pred             HHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCch
Q 009757          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS  421 (526)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (526)
                      ....+.|.|+++.+|.++.+.+.+.....+...++.++.|++.||+++|+         ....+.+...+........++
T Consensus       217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~---------~~~~~~~~~~~~~~~~~~~~~  287 (375)
T TIGR00899       217 LYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR---------LMLLAALAGVAFYTGLAADNS  287 (375)
T ss_pred             HHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh---------HHHHHHHHHHHHHHHHHHHHH
Confidence            66778899998888999999998888777778888999999999999882         222222222222222222334


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHH
Q 009757          422 PVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLS  501 (526)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  501 (526)
                      .+.......+.....+...+.......+..|++++++.|+.+...++|..++|.+.|.+.+..| +...+.+.+++.+++
T Consensus       288 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~  366 (375)
T TIGR00899       288 LWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVA  366 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence            4433333333233333444556667788888888899999999999999999999999999887 888888888877777


Q ss_pred             HHHHHHH
Q 009757          502 ALFYIIF  508 (526)
Q Consensus       502 ~~~~~~~  508 (526)
                      .++...+
T Consensus       367 ~~~~~~~  373 (375)
T TIGR00899       367 LFCLLLI  373 (375)
T ss_pred             HHHHhee
Confidence            7665443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=8.9e-34  Score=287.34  Aligned_cols=410  Identities=15%  Similarity=0.120  Sum_probs=275.4

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhc-----CCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHH
Q 009757           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAH-----GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIM  167 (526)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l  167 (526)
                      ..+.+++.+.++.++.+..+++....+...|.+.+++     +.+..+.+++.+.+.++..++.+++|+++||+|||+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~   89 (502)
T TIGR00887        10 FGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVY   89 (502)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            3456777888889999999999999999988887653     34566789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhccccc------hHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHH
Q 009757          168 AWGVALWSLATFLTPWAADTS------LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIG  241 (526)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig  241 (526)
                      .++.++..++.++++++  ++      ++.++++|+++|++.|...+....++.|++|+++|+++.++......+|.+++
T Consensus        90 ~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g  167 (502)
T TIGR00887        90 GMELIIMIIATVASGLS--PGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG  167 (502)
T ss_pred             HHHHHHHHHHHHHHHHc--cCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988887  54      78899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-----------------------hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCC---CCCChhHHHHHH
Q 009757          242 LVLSPILMS-----------------------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH---PQISKYELEYIL  295 (526)
Q Consensus       242 ~~l~~~l~~-----------------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  295 (526)
                      +.++..+..                       .++||+.|.+.++..++..+ ..+..||+|+..   .+.+++.++...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~-~~~~lpESpr~l~~~~~~~~~a~~~~~  246 (502)
T TIGR00887       168 AIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY-FRLTIPETPRYTADVAKDVEQAASDMS  246 (502)
T ss_pred             HHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHhCcchHHHHHHHH
Confidence            998876542                       24799999877776655443 456678888742   221111121111


Q ss_pred             Hhcc---cccccC-C--CCCCCCCCchHHHHHcC---chH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchh
Q 009757          296 REKQ---KPLLMG-N--KHKPATVIPPFRRLLSK---MPT----WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQA  362 (526)
Q Consensus       296 ~~~~---~~~~~~-~--~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~  362 (526)
                      +...   .....+ +  +++++....++++++++   ++.    +......+...+.+++...|.|.++++ .|++....
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~  325 (502)
T TIGR00887       247 AVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAA  325 (502)
T ss_pred             HHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCcc
Confidence            1111   000000 0  00011112356677653   222    112223344445566777888999977 68875432


Q ss_pred             hh------------HhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc--cCc-hhHHHHH
Q 009757          363 SW------------FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT--AAK-SPVMASA  427 (526)
Q Consensus       363 ~~------------~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~  427 (526)
                      +.            ...+..++.+++.++.+++.||+|||+         ....+..+.++....+.  ... .......
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~---------~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  396 (502)
T TIGR00887       326 TNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKP---------IQLMGFFILTVLFFVLGFAYNHLSTHGFLA  396 (502)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchh---------HHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            21            123334556678899999999999992         22222222222222111  100 1111111


Q ss_pred             HHHHHHHH-HhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccc---------hhHHHHHHHHH
Q 009757          428 WLTLAIGM-KSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG---------SFQGFLLLTSL  496 (526)
Q Consensus       428 ~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g---------~~~~~~~~~~~  496 (526)
                      ..++...+ .....+..+.+..|..| +.|+++.|+.+.++.++++++|.+.+++.+..+         ++...+++.++
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~  476 (502)
T TIGR00887       397 IYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFAL  476 (502)
T ss_pred             HHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHH
Confidence            11121222 22233455666788888 689999999999999999999999999988531         13456666666


Q ss_pred             HHHHHHHHHHHHhcCceec
Q 009757          497 LYFLSALFYIIFSTGERVN  515 (526)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~  515 (526)
                      +.+++.+..++++++++++
T Consensus       477 ~~~~~~i~~~~lpEt~~~~  495 (502)
T TIGR00887       477 FMFLGILFTLLIPETKGKS  495 (502)
T ss_pred             HHHHHHHHheEeccCCCCC
Confidence            6666655555455554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=3.2e-33  Score=278.29  Aligned_cols=357  Identities=15%  Similarity=0.114  Sum_probs=249.0

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHH-HHH-----HHHHHHhhhhhhHHHhHhcChHHHHHH
Q 009757           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQ-SSF-----LWGYLVSPIAGGTLVDYYGGKIIMAWG  170 (526)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~-s~~-----~~~~~~~~~~~G~l~dr~Grr~~l~~~  170 (526)
                      |++....++++.+++++|+..+++..|.+.++++.++.+.+.+. +..     .++..+++++.|+++||+|||+.++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            45568888899999999999999999999999999888765443 322     223347889999999999999999999


Q ss_pred             HHHHHHHHhhhhhccccchH--------HHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHH
Q 009757          171 VALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL  242 (526)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~  242 (526)
                      .+++.++.++++++  ++++        .++++|+++|++.+...+....++.|++|+++|++++++...+.++|..+++
T Consensus        93 ~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~  170 (434)
T PRK15075         93 LSIMASGTLLIAFV--PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA  170 (434)
T ss_pred             HHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999  8876        4688999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHH--------hhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCC
Q 009757          243 VLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVI  314 (526)
Q Consensus       243 ~l~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (526)
                      .+++.+.        +.+|||++|++.++...+ .   ++.....|+..    +...+            ++   +.+..
T Consensus       171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-~---~~~~~~~~e~~----~~~~~------------~~---~~~~~  227 (434)
T PRK15075        171 LLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-I---FLIRRSLEETE----EFLAR------------KH---RPSMR  227 (434)
T ss_pred             HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-H---HHHHHhcCCCH----HHHHh------------hh---ccccc
Confidence            8887763        467999999875443211 1   11111111110    00000            00   00112


Q ss_pred             chHHHHHcCchHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCc
Q 009757          315 PPFRRLLSKMPTWSI-IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS  393 (526)
Q Consensus       315 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~  393 (526)
                      +.++...++++.+.. .+..++....++.+..|.|.|+++.+|++..+.++...+..++..++.++.|++.||++||+  
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~--  305 (434)
T PRK15075        228 EIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP--  305 (434)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--
Confidence            234444555555543 33344455667778899999999888999999998888888999999999999999999882  


Q ss_pred             cchhHHHHHHHHHHHHHHHH--H-hhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhH-
Q 009757          394 VTLTRKILQSIGFIAPGIAL--I-GLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTF-  468 (526)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l-  468 (526)
                           ... ..........+  + .....+..........+.....+...+.......|..| +.|+++.|+.+.+... 
T Consensus       306 -----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~  379 (434)
T PRK15075        306 -----VLI-AFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAI  379 (434)
T ss_pred             -----HHH-HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHH
Confidence                 111 11111111111  1 11122222222221122222223333444456667766 6899999997666654 


Q ss_pred             HHHHHHHHHhhhccccch
Q 009757          469 AAILGTVGAGFFVELVGS  486 (526)
Q Consensus       469 g~~~~~~~~g~l~~~~g~  486 (526)
                      ++.++|.+.|++.|..|.
T Consensus       380 ~g~~~p~~~g~i~~~~g~  397 (434)
T PRK15075        380 FGGFTPAISTWLIHVTGD  397 (434)
T ss_pred             HhhhHHHHHHHHHHhcCC
Confidence            588899999999998873

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=5.9e-34  Score=278.24  Aligned_cols=354  Identities=14%  Similarity=0.100  Sum_probs=273.9

Q ss_pred             HHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhh
Q 009757          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (526)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~  183 (526)
                      +....++..+......+.+|.+..+++.++.+.|++.+++.++..++++++|+++||+|||++++++.++.+++.++..+
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            34556666777778888889999999999999999999999999999999999999999999999999999888888777


Q ss_pred             cccc-----chHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHH
Q 009757          184 AADT-----SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (526)
Q Consensus       184 ~~~~-----~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f  258 (526)
                      .  +     +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++||.+++.+.+..|||+.|
T Consensus        84 ~--~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~  161 (365)
T TIGR00900        84 V--ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAI  161 (365)
T ss_pred             H--HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            7  6     99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHH
Q 009757          259 VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSW  338 (526)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (526)
                      ++.++..++..+..+...++++++.+..+.++.                 ..++..+.++..+++|.++...+..++...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (365)
T TIGR00900       162 WVDAVGFAISALLIVSVRIPELAASEIQALSNA-----------------VLRDTREGIKFVLKNPLLRTLLLLALLFNL  224 (365)
T ss_pred             HHHHHHHHHHHHHHHhcccccCCCccccccchh-----------------HHHHHHhHHHHHHcCcHHHHHHHHHHHHHH
Confidence            988776665554444333222111111000000                 000112345678889999888887777777


Q ss_pred             HHHHHH-HhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc
Q 009757          339 GFFVIL-SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (526)
Q Consensus       339 ~~~~~~-~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (526)
                      ...... .+.|.|.++.+|.+..+.+.+.....++..++.++.+++.||.+++         .....+....++......
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~  295 (365)
T TIGR00900       225 VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM---------ALMTGAIFVIGLAILVVG  295 (365)
T ss_pred             HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh---------HHHHHHHHHHHHHHHHHH
Confidence            776666 8889999887899999999999999999999999999999999887         223333333333333333


Q ss_pred             cCch-hHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccc
Q 009757          418 AAKS-PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (526)
Q Consensus       418 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g  485 (526)
                      ..+. .+...+..++.....+...+....+..+..| ++|+++.|+.+...+++..++|.+.|.+.|..|
T Consensus       296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       296 LTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3332 3333333333333334445555666666655 799999999999999999999999999998754

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=5.4e-33  Score=275.30  Aligned_cols=370  Identities=15%  Similarity=0.109  Sum_probs=270.5

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHH
Q 009757           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (526)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  176 (526)
                      ....+..+++..+...+......+..|.+.+++|+++.+.|++.+.+.+++.+++++.|++.||+|||+++.++.+++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~  103 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            44556667777788888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhh---hhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh-h-
Q 009757          177 ATFLT---PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-Q-  251 (526)
Q Consensus       177 ~~~~~---~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~-  251 (526)
                      +.+++   .++  ++++.++++|+++|+|.|...+..+.++.|+.|+++|...+++.+..+.+|..+++.+++.+.. . 
T Consensus       104 ~~~l~~~~~~a--~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        104 GAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99875   356  8999999999999999999999999999998877777778999999999999999999876541 0 


Q ss_pred             ------------------------cCchhHHHHHHHHHH-HHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCC
Q 009757          252 ------------------------AGIFGPFVIFGLSGF-LWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN  306 (526)
Q Consensus       252 ------------------------~gw~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (526)
                                              .+||++|+....+.. +..++.+...|+.+++++                     .
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~---------------------~  240 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH---------------------S  240 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc---------------------c
Confidence                                    256666654443332 322222222222111100                     0


Q ss_pred             CCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHH
Q 009757          307 KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYF-NFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD  385 (526)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~d  385 (526)
                      +++..+..+..++++++|.++...+..++..........|.+.|+ ++.+|+++.++++......++..+++++++++.|
T Consensus       241 ~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~  320 (438)
T PRK10133        241 DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS  320 (438)
T ss_pred             cccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000111234456888999988877777777788888888999885 5668999999999999999999999999999999


Q ss_pred             HHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHH
Q 009757          386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTA  465 (526)
Q Consensus       386 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  465 (526)
                      |+++|+       ..  ..+..+....++.....+..+. ...+.+.+.+.+...|..+....+..|++.+++.++.. +
T Consensus       321 r~g~~~-------~l--~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~-~  389 (438)
T PRK10133        321 RFAPHK-------VL--AAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-M  389 (438)
T ss_pred             HcCHHH-------HH--HHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHh-H
Confidence            999882       12  2222222222222222222222 22333334444555666666666767777788888886 4


Q ss_pred             HhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Q 009757          466 GTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL  500 (526)
Q Consensus       466 ~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  500 (526)
                      ..+|+.++|.+.|.+.|..|+.+..|++...+.+.
T Consensus       390 ~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~  424 (438)
T PRK10133        390 TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_pred             HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            55789999999999999876456666654444433

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=2.6e-33  Score=284.89  Aligned_cols=386  Identities=15%  Similarity=0.143  Sum_probs=266.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHH
Q 009757           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (526)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (526)
                      +.+++.+..+++.++++.++.....+.+|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||++++++.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   95 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            45677888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCc
Q 009757          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (526)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw  254 (526)
                      +++.+++++.  ++++.+++.|++.|++.+...+....++.|++|+++|++++++...+.++|..+++.+++.+.+.++|
T Consensus        96 ~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  173 (496)
T PRK03893         96 SVGTLACGFA--PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW  173 (496)
T ss_pred             HHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            9999999998  89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC-hhHHHHHHHhcccccccCCCCCCCCCCc------hHHHHH------
Q 009757          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQIS-KYELEYILREKQKPLLMGNKHKPATVIP------PFRRLL------  321 (526)
Q Consensus       255 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~------  321 (526)
                      |+.|++.++..++ .+......|+.++..+..+ +++.+...+...     ..++.......      .....+      
T Consensus       174 ~~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (496)
T PRK03893        174 RALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPVRTMVDILY-----RGEHRIINILLTLAAAAALWFCFAGNLQN  247 (496)
T ss_pred             HHHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccchhHHHHHh-----cchhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999875443332 2222223333321110000 000000000000     00000000000      000000      


Q ss_pred             ----------------------c--C-chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHH
Q 009757          322 ----------------------S--K-MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFT  376 (526)
Q Consensus       322 ----------------------~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~  376 (526)
                                            +  + +.........+...........++|.|+++.+|++..+++.+.+...++..++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g  327 (496)
T PRK03893        248 AAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVG  327 (496)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence                                  0  0 00000111111111111235578999998778999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHh--hccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-c
Q 009757          377 GYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG--LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-Q  453 (526)
Q Consensus       377 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  453 (526)
                      .++.|++.||+++|+         ....+..+..+..+.  .......+......++..+...........+..+..| +
T Consensus       328 ~~~~g~l~dr~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (496)
T PRK03893        328 CCVGGFLGDWLGTRK---------AYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTE  398 (496)
T ss_pred             HHHHHHHHHHhcchH---------HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHH
Confidence            999999999999882         222222222222221  1112222222222222112222223344455666666 6


Q ss_pred             chhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Q 009757          454 YSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLY  498 (526)
Q Consensus       454 ~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  498 (526)
                      ++|+++|+.+....+|+.++|.+.|.+.|..| +...+...+++.
T Consensus       399 ~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~  442 (496)
T PRK03893        399 QRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSFSL  442 (496)
T ss_pred             HhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHHH
Confidence            89999999999999999999999999999988 766665544433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=2.4e-34  Score=291.73  Aligned_cols=400  Identities=19%  Similarity=0.142  Sum_probs=272.2

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCc--------cchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHH
Q 009757           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWS--------RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA  168 (526)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s--------~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~  168 (526)
                      .+....++.+..+...++...+.+..+.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||++++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~  105 (481)
T TIGR00879        26 VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL  105 (481)
T ss_pred             HHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH
Confidence            344445555666777788888888999998888777        889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcc-ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHH--
Q 009757          169 WGVALWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS--  245 (526)
Q Consensus       169 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~--  245 (526)
                      ++.++..++.+++.+.. ..+++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++  
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~  185 (481)
T TIGR00879       106 IIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSG  185 (481)
T ss_pred             HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999998885541 145668999999999999999999999999999999999999999999999999999999  


Q ss_pred             -HHHHhhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCC-CCChhHHHHHHHhcccccccC-------------CCCCC
Q 009757          246 -PILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-QISKYELEYILREKQKPLLMG-------------NKHKP  310 (526)
Q Consensus       246 -~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------~~~~~  310 (526)
                       ..+.+..+||+.|++.++..++..+ ..++.||+|.... +.+.++.+....+........             ...+.
T Consensus       186 ~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (481)
T TIGR00879       186 KVSLNNTLGWRIPLGLQLIPAGLLFL-GLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEK  264 (481)
T ss_pred             hhcCCCCccHHHHHHHHHHHHHHHHH-HHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHH
Confidence             6666678999999996665554443 4445566553211 011111111100000000000             00000


Q ss_pred             CCCCchHHHHHc------CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHH
Q 009757          311 ATVIPPFRRLLS------KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLS  384 (526)
Q Consensus       311 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~  384 (526)
                      ......+++.++      .+.++...+..+........+..+.|.++++ +|++..+.+.......++.+++.++.+++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~  343 (481)
T TIGR00879       265 RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLV  343 (481)
T ss_pred             hhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000011223332      1223333333333333344456677777766 799998888998999999999999999999


Q ss_pred             HHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc-----cCc------hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-
Q 009757          385 DMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-----AAK------SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-  452 (526)
Q Consensus       385 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  452 (526)
                      ||+++|+         ....+.+..++..+.+.     ...      .........++..++.....+.......+..| 
T Consensus       344 d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  414 (481)
T TIGR00879       344 DRFGRRP---------LLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPL  414 (481)
T ss_pred             HHhcchH---------HHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCCh
Confidence            9999882         22222222222222221     111      22222222223333333333555666677777 


Q ss_pred             cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          453 QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       453 ~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      +.|+++.|+.+...+++.+++|.+.+.+.+..| +...|++.+++.+++.++.+++
T Consensus       415 ~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~i~~~~~  469 (481)
T TIGR00879       415 SLRPKGISIAVAANWLANFIVGFLFPTMLESIG-VGGVFIFFGGLNVLGLIFVYFF  469 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccceehhHHHHHHHHHHHHhee
Confidence            689999999999999999999999999999877 7777777777777666665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=1e-33  Score=287.35  Aligned_cols=373  Identities=18%  Similarity=0.158  Sum_probs=286.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHh
Q 009757          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (526)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~  179 (526)
                      .+..++++.++..++.....+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            45667788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHH
Q 009757          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (526)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~  259 (526)
                      +++++  ++++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++++.++++||+.|+
T Consensus        83 ~~~~~--~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        83 LCGVA--PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHhCc--CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            99999  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCC-CChhHHH----------HHHHhccc-ccccC-------------------CCC
Q 009757          260 IFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELE----------YILREKQK-PLLMG-------------------NKH  308 (526)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~-~~~~~-------------------~~~  308 (526)
                      +.+.+.++..++.++..|++++.... .+..+..          ....+..+ .....                   .+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWEL  240 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            98888777666666666654332211 1111000          00000000 00000                   000


Q ss_pred             CCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHH
Q 009757          309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI  388 (526)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~  388 (526)
                      .++++..+ .+++++|.++...+..++.....+....++|.|+++.+|+++.++++......++..++.++.|++.||++
T Consensus       241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~  319 (485)
T TIGR00711       241 TDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKID  319 (485)
T ss_pred             cCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            01111122 26788999988888888888888888999999999989999999999999999999999999999999999


Q ss_pred             hhcCccchhHHHHHHHHHHHHHHHHHhhc--c--CchhHHHHH-HHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHH
Q 009757          389 QRGTSVTLTRKILQSIGFIAPGIALIGLT--A--AKSPVMASA-WLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISN  463 (526)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  463 (526)
                      +|         .....+..+.++....+.  .  ....+.... ..+.+.+......+.........++++++++.|+.+
T Consensus       320 ~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  390 (485)
T TIGR00711       320 PR---------KLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSN  390 (485)
T ss_pred             cH---------HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHH
Confidence            88         223333333333333322  1  122222222 233334433333344444455566689999999999


Q ss_pred             HHHhHHHHHHHHHHhhhcccc
Q 009757          464 TAGTFAAILGTVGAGFFVELV  484 (526)
Q Consensus       464 ~~~~lg~~~~~~~~g~l~~~~  484 (526)
                      ....+|+.+|+.+.|.+.++.
T Consensus       391 ~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       391 FTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=9.6e-33  Score=270.45  Aligned_cols=360  Identities=15%  Similarity=0.099  Sum_probs=265.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHh
Q 009757          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (526)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~  179 (526)
                      .+..+.++.++.........+.+|.+.+++|.|..++|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~   86 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCA   86 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566677777888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHH
Q 009757          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (526)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~  259 (526)
                      +++++  ++++.++++|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+|+.+++.+.+...|...+.
T Consensus        87 ~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  164 (381)
T PRK03633         87 GLGLM--VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV  164 (381)
T ss_pred             HHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence            99998  9999999999999999999889888888899999999999999999999999999999999876543433332


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHH
Q 009757          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (526)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (526)
                       .+........+ ++. +.++++.                     ++  +   ...+.++.+++|.++......+.....
T Consensus       165 -~~~~~~~~~~~-~~~-~~~~~~~---------------------~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (381)
T PRK03633        165 -TGLVLAAILPL-LFT-RILNQQA---------------------EN--H---DSTSIWPMLKLRQARLGVNGCIISGIV  215 (381)
T ss_pred             -HHHHHHHHHHH-HHh-cccCCCC---------------------CC--C---CCCCHHHHHHhcchHHHHHHHHHHHHH
Confidence             22222211111 111 1111110                     00  0   112345678888877655545555555


Q ss_pred             HHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccC
Q 009757          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA  419 (526)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (526)
                      ......++|.|+++ .|.+....+.+.+...++.+++++..+++.||+++|+         ....+.....+....+.  
T Consensus       216 ~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~---------~l~~~~~~~~~~~~~~~--  283 (381)
T PRK03633        216 LGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL---------VLRVQVFVVILGSIAML--  283 (381)
T ss_pred             HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH---------HHHHHHHHHHHHHHHHh--
Confidence            66677889999988 6999999999999999999999999999999999882         22222233222222222  


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Q 009757          420 KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLY  498 (526)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  498 (526)
                      ..........+++.+.. ...+.......+..| ++++...+..+...++|..++|.+.|++.|+.| +...|.+.+.+.
T Consensus       284 ~~~~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~  361 (381)
T PRK03633        284 SQAAMAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVS  361 (381)
T ss_pred             hhHHHHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHH
Confidence            11122222222333222 334455555555554 577778888888899999999999999999987 777887777666


Q ss_pred             HHHHHH
Q 009757          499 FLSALF  504 (526)
Q Consensus       499 ~~~~~~  504 (526)
                      ++..+.
T Consensus       362 l~~~~~  367 (381)
T PRK03633        362 FIYLLM  367 (381)
T ss_pred             HHHHHH
Confidence            655443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=1.8e-32  Score=269.97  Aligned_cols=355  Identities=16%  Similarity=0.128  Sum_probs=256.1

Q ss_pred             HHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhh
Q 009757          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (526)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~  182 (526)
                      ......+........+.+.+|.+.+++|.++.+.++..+.+.++..+++++.|+++||+|||+.+.++.++.+++.+++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~   86 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS   86 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            34444455555666677889999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHH
Q 009757          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG  262 (526)
Q Consensus       183 ~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~  262 (526)
                      +.  ++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+.+..+||+.|++.+
T Consensus        87 ~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~  164 (392)
T PRK10473         87 LA--ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMA  164 (392)
T ss_pred             Hh--CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHH
Confidence            88  8999999999999999999999999999999999999999999999999999999999999888889999999998


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHH
Q 009757          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV  342 (526)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (526)
                      ++.++..++.+...+|+++++++                       ++....+..++.+++++++...+...+.......
T Consensus       165 ~~~~i~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (392)
T PRK10473        165 AMGILVLLLSLFILKETRPARAP-----------------------AASSKPRENSESLLNRFFLSRLVITTLSVTVILT  221 (392)
T ss_pred             HHHHHHHHHHHHHcCCCCCcccC-----------------------CccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            88777766666666654322110                       0001122345677888877666655555555556


Q ss_pred             HHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchh
Q 009757          343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP  422 (526)
Q Consensus       343 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (526)
                      +..+.|.++++.+|++..+.+.+.+...++.+++.++.+++.||+++|+         ....+.....+....+......
T Consensus       222 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~---------~~~~~~~~~~~~~~~~~~~~~~  292 (392)
T PRK10473        222 FVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRT---------LMLTSQVLFLAAGITLALSPSH  292 (392)
T ss_pred             HHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            6677788888878999999999999999999999999999999999882         2223333322222222222222


Q ss_pred             HHHHH-HHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Q 009757          423 VMASA-WLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLY  498 (526)
Q Consensus       423 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  498 (526)
                      +.... ..++..+... ..  ......+..| ++++   |.......++..+++.+.+++.+..| +.......+.+.
T Consensus       293 ~~~~~~~~l~~~g~~~-~~--~~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g-~~~~~~~~~~~~  363 (392)
T PRK10473        293 AVSLFGITLICAGFSV-GF--GVAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG-ISAWNMLIGILI  363 (392)
T ss_pred             HHHHHHHHHHHHHHHH-Hh--HHHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHH
Confidence            22221 1222222221 11  1223344444 3332   44444455677777777777777776 443333434333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=5.5e-33  Score=281.37  Aligned_cols=396  Identities=17%  Similarity=0.156  Sum_probs=265.3

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhc--------CCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHH
Q 009757           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAH--------GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKII  166 (526)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~  166 (526)
                      +..++...+..++.+..+++...+++..|.+.+++        +.++.+.+++.+.+.++..++++++|+++||+|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~   87 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            44567777788888999999999999999888877        8889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcc----------ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhh
Q 009757          167 MAWGVALWSLATFLTPWAA----------DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS  236 (526)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  236 (526)
                      ++++.+++.++.+++++..          .+.++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~  167 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF  167 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence            9999999998888776520          123567889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH--------hhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCC-CChhHHHHHHHhcccccccCCC
Q 009757          237 GNAIGLVLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELEYILREKQKPLLMGNK  307 (526)
Q Consensus       237 G~~ig~~l~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  307 (526)
                      |.++++.++..+.        +.+|||+.|++.++..++..+. .++.||+|+.... .+.++.+...++....      
T Consensus       168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~------  240 (479)
T PRK10077        168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAEGILRKIMGN------  240 (479)
T ss_pred             HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHHHHHcCC------
Confidence            9999988876553        3568999999988877776544 4556776643111 1111111111111000      


Q ss_pred             CCCCCCCchHHHHHc-----CchHH-----HH----HHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHH
Q 009757          308 HKPATVIPPFRRLLS-----KMPTW-----SI----IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM  373 (526)
Q Consensus       308 ~~~~~~~~~~~~~~~-----~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~  373 (526)
                      .+......+.++.++     .+..+     ..    ....+......+....+.|.+.++ .|.+.....+.....++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~  319 (479)
T PRK10077        241 TLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVIN  319 (479)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHH
Confidence            000000001111111     00100     00    011111122233445566777766 7888877777777888889


Q ss_pred             HHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc---cCchh-HHHHHHH-HHHHHHHhhhhhhHHHHHH
Q 009757          374 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT---AAKSP-VMASAWL-TLAIGMKSFSHSGFLVNLQ  448 (526)
Q Consensus       374 ~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~  448 (526)
                      +++.++.+++.||++||         .....+.++..+..+.+.   ..+.. ......+ +.+.++.....+.......
T Consensus       320 ~i~~~~~g~l~dr~g~r---------~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (479)
T PRK10077        320 LTFTVLAIMTVDKFGRK---------PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS  390 (479)
T ss_pred             HHHHHHHHHHHHHhcCh---------HHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhH
Confidence            99999999999999988         223333333333222221   11111 1222222 2222222223355677788


Q ss_pred             hhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhc------cccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          449 EIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV------ELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       449 ~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      |..| ++|+++.|+.+...+++.++++.+.+.+.      +..| +...|++.+++.++++++.+.+
T Consensus       391 e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  456 (479)
T PRK10077        391 EIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMGVLAALFMWKF  456 (479)
T ss_pred             hhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHHHHHHHHHHHhc
Confidence            8877 69999999999999999999877766444      4555 4566666666555555554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=2.9e-32  Score=270.37  Aligned_cols=372  Identities=17%  Similarity=0.136  Sum_probs=270.2

Q ss_pred             HHHHHHHHHHhhhhhhhhcchhhhhhhcCCccch-----hhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHH
Q 009757          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSF-----SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (526)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~-----~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  176 (526)
                      ..+++..++.........+.+|.+.+++|.+..+     .|++.+++.++..++++++|+++||+|||+++..+.++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   96 (408)
T PRK09874         17 TVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI   96 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence            3445556666777778888999999999988655     48999999999999999999999999999999999999999


Q ss_pred             HHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchh
Q 009757          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (526)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~  256 (526)
                      +.+++.+.  ++++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|..++|.+++.+.+..+||+
T Consensus        97 ~~~~~~~~--~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  173 (408)
T PRK09874         97 VMVLMGLA--QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRP  173 (408)
T ss_pred             HHHHHHHH--hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence            99888888  899999999999999865 467788899999999999999999999999999999999999999899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHH-HHHHH
Q 009757          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII-VANAM  335 (526)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  335 (526)
                      .|++.+++.++..+..++..++++++.++.++                       ...++..+.+++++++... ...+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~  230 (408)
T PRK09874        174 VFFITASVLFLCFLVTLFCIRENFQPVSKKEM-----------------------LHMREVVTSLKNPKLVLSLFVTTLI  230 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcccccchhh-----------------------hHHHHHHHhCcCCchHHHHHHHHHH
Confidence            99999888777666666666554322111000                       0011223455666665433 33333


Q ss_pred             HHHHHHHHHHhHHHHHHHHhcCCcc---hhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHH
Q 009757          336 HSWGFFVILSWMPIYFNFVYHIDLR---QASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA  412 (526)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~g~s~~---~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (526)
                      .......+..+++.|..+..+....   ..+.+..+.+++..++.+..|++.||+++|+         ....+.....+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~---------~~~~~~~~~~~~  301 (408)
T PRK09874        231 IQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK---------ILITALIFSVLL  301 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch---------hHHHHHHHHHHH
Confidence            4445555667788888875332221   2345556667788888999999999999882         222333333333


Q ss_pred             HHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHH
Q 009757          413 LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFL  491 (526)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~  491 (526)
                      .+.....++.+......++.+...+...+.......+..| +++|+.+|+.+....+|..+||.+.|.+.+..| +...|
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f  380 (408)
T PRK09874        302 LIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVF  380 (408)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHH
Confidence            3333333344443333333233333334444444455544 789999999999999999999999999999887 88999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 009757          492 LLTSLLYFLSALFYIIFS  509 (526)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~  509 (526)
                      .+.+++.+++.+..+...
T Consensus       381 ~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        381 LVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            988888887776665543

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=6.5e-32  Score=266.82  Aligned_cols=350  Identities=18%  Similarity=0.121  Sum_probs=264.9

Q ss_pred             HHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhh
Q 009757          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (526)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  180 (526)
                      +....+...+..+....+.+.+|.+.+++|.++++.+++.+++.++..++++++|+++||+|||+++..+.++..++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   87 (401)
T PRK11043          8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLG   87 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHH
Confidence            33344445555666778888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHH
Q 009757          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (526)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~  260 (526)
                      +.+.  ++++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++++.+.+|||+.|++
T Consensus        88 ~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~  165 (401)
T PRK11043         88 MLWV--ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFAT  165 (401)
T ss_pred             HHHh--cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            9888  89999999999999998888888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHH
Q 009757          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (526)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (526)
                      .+++.++..+..++..++++++ +                         +++...++++++++|+++...+...+.....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~-~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (401)
T PRK11043        166 LFAITLLLILPTLRLKPSKKAR-K-------------------------QSQDALTFKQLLKSKTYLGNVLIFAACSAAF  219 (401)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcc-c-------------------------cchHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence            8888777666555443332211 0                         0011235678888888877666666666666


Q ss_pred             HHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHH--Hhhcc
Q 009757          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL--IGLTA  418 (526)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  418 (526)
                      ..+..+.|.++++ +|++..+.++......++..++.++.+++.||+++++..      ........+....+  .....
T Consensus       220 ~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  292 (401)
T PRK11043        220 FAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL------PWLLVLFAVSVIAIWLASLLS  292 (401)
T ss_pred             HHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH------HHHHHHHHHHHHHHHHHHHhc
Confidence            7777889998877 799999999888888888899999999999999877210      11111111111111  11111


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccc
Q 009757          419 AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (526)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g  485 (526)
                      .+..+.......+.....+...+.......+..|+++|++.|+.++....++..++.+.|.+.+...
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~  359 (401)
T PRK11043        293 HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALISTPL  359 (401)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence            2233323222222233333444444445555567889999999999999999999999999988643

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=100.00  E-value=1e-31  Score=264.80  Aligned_cols=354  Identities=16%  Similarity=0.136  Sum_probs=272.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHH
Q 009757           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (526)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  176 (526)
                      .++.+.+..+..++..+....+.+.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+++.++.++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            45556666666667777777888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchh
Q 009757          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (526)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~  256 (526)
                      +.+++.+.  ++++.+++.|++.|++.+...+....+..|+++++++++++++...+..+|..++|.+++.+.+..|||+
T Consensus        86 ~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~  163 (394)
T PRK11652         86 GTLVALFA--HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRA  163 (394)
T ss_pred             HHHHHHHH--ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence            99998888  8999999999999999998888888999999999999999999999999999999999999999899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHH
Q 009757          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (526)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (526)
                      .|++.++..++..++..+..||+++..++                        +.+..+++++.+++|+++...+..+..
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (394)
T PRK11652        164 CYLFLLLLGAGVTFSMARWMPETRPADAR------------------------RTRVLASYRTLLSNRRFNCYLLMLIGT  219 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCccccc------------------------hhHHHHHHHHHHcChHHHHHHHHHHHH
Confidence            99998877766655555555554322110                        001234566788888888766666666


Q ss_pred             HHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhh
Q 009757          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (526)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (526)
                      ......+..+.+.++++.+|++..+.+++.....++..++..+.+++.||.+++        ............+.....
T Consensus       220 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~  291 (394)
T PRK11652        220 LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIP  291 (394)
T ss_pred             HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence            666666677788899988899999999988888888888888888888888743        111112222222222111


Q ss_pred             c--cCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhcccc
Q 009757          417 T--AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELV  484 (526)
Q Consensus       417 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~  484 (526)
                      .  .....+......++.....+...+.......+..|+++|++.++.+....+|..+++.+.+.+.+..
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~  361 (394)
T PRK11652        292 GWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQTG  361 (394)
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            1  1223333333333333333445566666667777889999999999999999999999999887653

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=100.00  E-value=5e-32  Score=265.64  Aligned_cols=363  Identities=16%  Similarity=0.180  Sum_probs=266.2

Q ss_pred             hhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHH
Q 009757          114 DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALL  193 (526)
Q Consensus       114 ~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  193 (526)
                      ...++.+.+|.+.+++|+++.+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.+.  ++++.++
T Consensus         6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~   83 (377)
T PRK11102          6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA--QTIDQLI   83 (377)
T ss_pred             HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHH
Confidence            44567789999999999999999999999999999999999999999999999999999999999999998  8999999


Q ss_pred             HHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 009757          194 AMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL  273 (526)
Q Consensus       194 ~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  273 (526)
                      +.|+++|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+.+..+||+.|++.+++.++..+...
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888777666665


Q ss_pred             hhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009757          274 SATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNF  353 (526)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (526)
                      +..||++++.++.                    +.+.+...+++++.+++|.++...+..++.......+..+.|.++.+
T Consensus       164 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (377)
T PRK11102        164 FFIPETLPKERRQ--------------------PFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIE  223 (377)
T ss_pred             HhCCccCcccccC--------------------CCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            5555543221100                    00001112355678889988887777777777777777888888888


Q ss_pred             HhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHH-HHHHHHHHhhcc-CchhHHHHHHHHH
Q 009757          354 VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF-IAPGIALIGLTA-AKSPVMASAWLTL  431 (526)
Q Consensus       354 ~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~  431 (526)
                      .+|+++.+.+.+.....++..++.++.+++.||+++|+       ........ ...++.+..... ....+.......+
T Consensus       224 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (377)
T PRK11102        224 LNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALN-------MLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAA  296 (377)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            88999999999999999999999999999999999882       12211111 111222222211 1222322222222


Q ss_pred             HHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHh-HHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          432 AIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGT-FAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      ..+..............+..|+.++++.++.+.... ++..+++.+.+. .+. + +...+...+++.+.+++..++.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~  371 (377)
T PRK11102        297 FVGCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSLA-PFT-S-AWPMVWSMAFCSILSILFYLYA  371 (377)
T ss_pred             HHHHHHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHhc-cCC-C-hHHHHHHHHHHHHHHHHHHHHh
Confidence            222223333334445566778899999999877654 566666655443 222 2 3334444444444444444433

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=1.8e-32  Score=271.00  Aligned_cols=374  Identities=21%  Similarity=0.251  Sum_probs=272.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHH
Q 009757           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (526)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (526)
                      +++++.+....+..+...++.....+..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF   92 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            44566677777777888888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCc
Q 009757          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (526)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw  254 (526)
                      +++.++..+.  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..||
T Consensus        93 ~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  170 (398)
T TIGR00895        93 SVFTLLCALA--TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW  170 (398)
T ss_pred             HHHHHHHHHc--cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence            9999998888  89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHH----hcccccc--cCCCCCCCCCCch-HHHHHcC---c
Q 009757          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILR----EKQKPLL--MGNKHKPATVIPP-FRRLLSK---M  324 (526)
Q Consensus       255 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~-~~~~~~~---~  324 (526)
                      +..|++.+++.++..++.+...|++++.....++++.....+    +......  ..+++.+....+. .+.++++   +
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR  250 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHH
Confidence            999999876666666666666666554221111111111111    0000000  0000011111112 2223332   2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHH
Q 009757          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI  404 (526)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  404 (526)
                      ..+...+..++..........+.|.+.++ +|.+..+.+.......++..++.++.+++.||+++|         .....
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~  320 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLPKLMVE-LGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR---------VTALL  320 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH---------HHHHH
Confidence            33444455556666677778888855555 799999999999999999999999999999999877         11112


Q ss_pred             HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhh
Q 009757          405 GFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFF  480 (526)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l  480 (526)
                      ................+.+......++.....+...+.......+..| ++|+++.|+.+.+..+|..++|.+.|++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       321 LLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            222222222222112333333333333333334445556667777766 6999999999999999999999999876

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=4.2e-32  Score=267.31  Aligned_cols=364  Identities=17%  Similarity=0.147  Sum_probs=252.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhcchhh-hhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHh
Q 009757          101 VSMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (526)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~  179 (526)
                      +..+.+..++.........+.+|. +.+++|.|..++|++.+++.++..++++++|+++||+|||+++.++.+...++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~   96 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGL   96 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHH
Confidence            333444556666666777788886 5688999999999999999999999999999999999999999998887776554


Q ss_pred             hh---hhc---cccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC
Q 009757          180 LT---PWA---ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (526)
Q Consensus       180 ~~---~~~---~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g  253 (526)
                      .+   ++.   ..++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+||++++++.+.+|
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (392)
T PRK12382         97 AYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG  176 (392)
T ss_pred             HHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            32   221   115788999999999999999889999999999999999999999999999999999999999999899


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHH
Q 009757          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN  333 (526)
Q Consensus       254 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (526)
                      |+..+.+..+..++.... ....|+.++++                        +++    .+.++.++  .++...+..
T Consensus       177 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------------------------~~~----~~~~~~~~--~~~~~~~~~  225 (392)
T PRK12382        177 FAALALTTMVLPLLAWAF-NGTVRKVPAHA------------------------GER----PSLWSVVG--LIWKPGLGL  225 (392)
T ss_pred             hHHHHHHHHHHHHHHHHH-HHhccCCCCCc------------------------ccC----chHHHHHH--HHHHhHHHH
Confidence            998776655443332221 11112111100                        000    01122221  122222222


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHH
Q 009757          334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL  413 (526)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (526)
                      ++.......+..+.|.|+++ .|++  ..+.......++..+++++.|++.||+++|+.       ..  .+.....+..
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-------~~--~~~~~~~~~~  293 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV-------AI--VSLLVETVGL  293 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCee-------hH--HHHHHHHHHH
Confidence            33344555667788888877 4665  35566667777788899999999999998732       22  2222222222


Q ss_pred             HhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHh-hcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHH
Q 009757          414 IGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQE-IAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLL  492 (526)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~  492 (526)
                      ..+...++.+......++.....+...+.......+ .++++||++.|+.++...+|..++|.+.|++.|+.| +...|.
T Consensus       294 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~  372 (392)
T PRK12382        294 LLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFL  372 (392)
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHH
Confidence            223233344333333333222223333444444444 445899999999999999999999999999999987 899999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 009757          493 LTSLLYFLSALFYIIF  508 (526)
Q Consensus       493 ~~~~~~~~~~~~~~~~  508 (526)
                      +.+++.+++.++.+..
T Consensus       373 ~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        373 AGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            8888887777665544

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=2.7e-33  Score=272.16  Aligned_cols=346  Identities=26%  Similarity=0.387  Sum_probs=264.8

Q ss_pred             HHHHHHHhhhhhhhhcchh-hhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhh
Q 009757          105 ALALALCNADRVVMSVAIV-PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (526)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~  183 (526)
                      ++..++..+......+.+| .+.+++|.++.+++++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..+
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            4566777777888888889 899999999999999999999999999999999999999999999999999999776667


Q ss_pred             ccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 009757          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (526)
Q Consensus       184 ~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~  263 (526)
                      +  ++++.++++|++.|++.+...+...+++.|++|+++|++++++.....++|.++++.+++.+.+..+||+.|++.++
T Consensus        82 ~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~  159 (352)
T PF07690_consen   82 A--SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI  159 (352)
T ss_dssp             H--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred             h--hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence            6  77889999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCc-hHHHHHcCchHHHHHHHHHHHHHHHHH
Q 009757          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIP-PFRRLLSKMPTWSIIVANAMHSWGFFV  342 (526)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (526)
                      +.++..++...+.++++++++..++++.+               ++.+.... .++.++++|.+|...+..++.......
T Consensus       160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (352)
T PF07690_consen  160 LSLIAAILFILFLPEPPPPRERESPKESE---------------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSG  224 (352)
T ss_dssp             HHHHHHHHHHCCC---STTTT--SSTTTT-----------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHhhhhhhcccccccccccccc---------------cccccccccccccccccchhhhhhhhhhHHHHHHHH
Confidence            98887775444444444333221111100               00111222 366778888887566666666667888


Q ss_pred             HHHhHHHHHHHHhcCC-cchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHH-HHHHHHHHHHHHhhccCc
Q 009757          343 ILSWMPIYFNFVYHID-LRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ-SIGFIAPGIALIGLTAAK  420 (526)
Q Consensus       343 ~~~~~~~~~~~~~g~s-~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  420 (526)
                      ...+.|.|+++.+|++ ..+.+.+.++..+...++.++.+++.||++++       +.... ........+.+.......
T Consensus       225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  297 (352)
T PF07690_consen  225 FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-------RRLLIAILLLILGALGLLLLPFSS  297 (352)
T ss_dssp             HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHCCSHHHC
T ss_pred             hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999988879999 78999999999999999999999999998876       12222 222222222222222222


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHH
Q 009757          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGT  474 (526)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~  474 (526)
                      +..+.....++.....+...+.......+..| +++|++.|+.+...+++..++|
T Consensus       298 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  298 SPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            33333333333333455556677777777766 7999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=1e-31  Score=264.00  Aligned_cols=353  Identities=14%  Similarity=0.105  Sum_probs=256.6

Q ss_pred             hhhhcchh-hhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHH
Q 009757          116 VVMSVAIV-PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLA  194 (526)
Q Consensus       116 ~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  194 (526)
                      ....+.++ .+.+++|.+..++|++.+...++..+.+++.|+++||+|||+++.++.++.+++.+++.+.  ++++.+++
T Consensus        27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--~~~~~l~~  104 (400)
T PRK11646         27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--HEPWLLWL  104 (400)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--ccHHHHHH
Confidence            34444444 4678899999999999999999999999999999999999999999999999999999888  89999999


Q ss_pred             HHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHh
Q 009757          195 MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (526)
Q Consensus       195 ~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  274 (526)
                      .|+++|++.+...+...+++.|++|+++|++++++.....++|..+||.+++++. .+|||+.|++.++..++..++..+
T Consensus       105 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~  183 (400)
T PRK11646        105 SCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAW  183 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888999999999999999999999999999999999999999998 679999999988877666555444


Q ss_pred             hccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009757          275 ATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFV  354 (526)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (526)
                      ..|+.++++                         .+++..+++++.+++|+++...+..+...........++|.|+++.
T Consensus       184 ~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  238 (400)
T PRK11646        184 LLPAYKLST-------------------------VRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDI  238 (400)
T ss_pred             hCCcccccc-------------------------cchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence            444321110                         0001123566788899887766655555444445567889999885


Q ss_pred             hcCCcchhhhHhhHhHHHHHHHHHHHHHHHHH-HHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHH
Q 009757          355 YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAI  433 (526)
Q Consensus       355 ~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (526)
                       +.++.+.+.+.+...++...+....+++.|| ++.+       +  ....+....++..+.+...++.+.......+..
T Consensus       239 -~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~-------~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  308 (400)
T PRK11646        239 -AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLE-------H--RLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFY  308 (400)
T ss_pred             -cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-------H--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence             4477788888777777666555555555554 4333       1  122333333333333333344433333222222


Q ss_pred             HHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccch---hHHHHHHHHHHHHHHHHHHH
Q 009757          434 GMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS---FQGFLLLTSLLYFLSALFYI  506 (526)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~---~~~~~~~~~~~~~~~~~~~~  506 (526)
                      ...+...+.......+..| +++|+++|+.+....+|..+||.+.|.+.|+.++   ....+...+++.+++.+...
T Consensus       309 ~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        309 IGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALY  385 (400)
T ss_pred             HHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHH
Confidence            2233444555566666655 7999999999999999999999999999998642   34556665555555554443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=8.2e-32  Score=264.06  Aligned_cols=373  Identities=14%  Similarity=0.111  Sum_probs=266.3

Q ss_pred             HHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhh
Q 009757          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (526)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~  183 (526)
                      ++++.++..+.........+.+.++++.++.+.+++.+.+.+++.++.+++|+++||+|||++++++.++.+++.+++++
T Consensus         8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~   87 (393)
T PRK11195          8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF   87 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence            45556666665555566666778999999999999999999999999999999999999999999999999998888777


Q ss_pred             ccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 009757          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (526)
Q Consensus       184 ~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~  263 (526)
                      .  .+.   ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.+++++.+. .|+..+.+.+.
T Consensus        88 ~--~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~  161 (393)
T PRK11195         88 G--IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCAL  161 (393)
T ss_pred             H--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            6  553   77899999999999999999999999999999999999999999999999999999885 47777776665


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 009757          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (526)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (526)
                      ..++.. +..+..|+.+.+.+..+.++... .+               +....++.++++|.+....+..++........
T Consensus       162 ~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  224 (393)
T PRK11195        162 IYLLAA-LFNLFIPRLGARRPGQSWNPIAL-LR---------------DFFHACRVLWRDKLGRFSLAGTTLFWGAGATL  224 (393)
T ss_pred             HHHHHH-HHHhcCCCCcccccccCCCHHHH-HH---------------HHHHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence            544333 33344555443221111110000 00               00123456788887766555555555555666


Q ss_pred             HHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhH
Q 009757          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV  423 (526)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (526)
                      ....|.|+++.+|.++.+.|++.+...++.+++.++.+++.||.++++         ....+.. .+...+.+...++.+
T Consensus       225 ~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~---------~~~~g~~-~~~~~~~~~~~~~~~  294 (393)
T PRK11195        225 RFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR---------VLPAGIL-MGLVVLLMALQHSLL  294 (393)
T ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc---------hHHHHHH-HHHHHHHHHHHhHHH
Confidence            677788888889999999999999999999999999999988766551         1222222 222222223333444


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHhhccc-c-hhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHH
Q 009757          424 MASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-Y-SGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLS  501 (526)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  501 (526)
                      ......++.+...+...+......++..|+ . +|++.++.+...+++..++..+.+.+ +..| ....+.+.++..+++
T Consensus       295 ~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~  372 (393)
T PRK11195        295 PAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLG-VPVVAVIVGFGLLVA  372 (393)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHH
Confidence            333333222222333334455556667765 3 69999999999999999999999865 5556 667777766666666


Q ss_pred             HHHHHHHhcC
Q 009757          502 ALFYIIFSTG  511 (526)
Q Consensus       502 ~~~~~~~~~~  511 (526)
                      ..+.+.++.+
T Consensus       373 ~~~~~~~~~~  382 (393)
T PRK11195        373 LAMALLWRWH  382 (393)
T ss_pred             HHHHHHHHHH
Confidence            6666555443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9e-33  Score=273.24  Aligned_cols=405  Identities=20%  Similarity=0.195  Sum_probs=328.1

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHH
Q 009757           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (526)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (526)
                      ...+.|.+++..++...........++.+.+.++++++.+.++++|+.++......+..++.+.+.||+|.|.+.+.|.+
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~  119 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL  119 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence            45567888888888888888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhccccchHHHHHH-HHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 009757          173 LWSLATFLTPWAADTSLLALLAM-RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ  251 (526)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~-r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~  251 (526)
                      +.+++.++.+++  +++|++++. -++.|+|.|+.+.....++..|| +++|+.+.|+...+.++|.++-|.+...+.+.
T Consensus       120 v~~~g~~lssF~--~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~  196 (509)
T KOG2504|consen  120 VAALGLLLSSFA--TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSK  196 (509)
T ss_pred             HHHHHHHHHHHH--hhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHH
Confidence            999999999999  999988776 78999999999999999999998 59999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHH------------Hhcccc--cc-----------c-C
Q 009757          252 AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL------------REKQKP--LL-----------M-G  305 (526)
Q Consensus       252 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~--~~-----------~-~  305 (526)
                      +|||+.+++.+.+.+-..+......|..+...+. ..++.+...            ....+.  ..           . +
T Consensus       197 ~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (509)
T KOG2504|consen  197 YGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGP  275 (509)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCC
Confidence            9999999999999887777777777744433222 000000000            000000  00           0 0


Q ss_pred             CCCCCCCCCchH----HHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHH
Q 009757          306 NKHKPATVIPPF----RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG  381 (526)
Q Consensus       306 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g  381 (526)
                      ++..........    .+++++|.++.+.+...+...++.....++|.|.++ +|++..+++.+.++.++...+++++.|
T Consensus       276 ~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G  354 (509)
T KOG2504|consen  276 DKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILG  354 (509)
T ss_pred             ccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhh
Confidence            000000111112    478999999999999999999999999999999997 899999999999999999999999999


Q ss_pred             HHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHH
Q 009757          382 LLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (526)
Q Consensus       382 ~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g  460 (526)
                      ++.|+...+       +..+..++++..++..+..+...+.+..+...++.+...+...........+..+ ++-..++|
T Consensus       355 ~laD~~~~~-------~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~G  427 (509)
T KOG2504|consen  355 LLADKPGIR-------ALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYG  427 (509)
T ss_pred             hhcCccccc-------hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHH
Confidence            999998855       3466677777777777777777776655555444444444444555555666665 88999999


Q ss_pred             HHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 009757          461 ISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS  509 (526)
Q Consensus       461 ~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (526)
                      +...+..++..+||++.|++.|..|+|...|++++++.+++.+++++.+
T Consensus       428 l~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  428 LLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999888777665

>PRK15011 sugar efflux transporter B; Provisional

Probab=100.00  E-value=5e-31  Score=259.17  Aligned_cols=362  Identities=14%  Similarity=0.100  Sum_probs=249.6

Q ss_pred             HHHHHhhhhhhhhcchhh-hhhhcCCccchhhHHHHHHHH-HHHHhhhhhhHHHhHhcChHHH-HHHHHHHHHHHhhhhh
Q 009757          107 ALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYGGKIIM-AWGVALWSLATFLTPW  183 (526)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~l-~~~~~~~~~~~~~~~~  183 (526)
                      ..++.........+.+|. +.+++|.+++++|++.+...+ +..++.+++|+ .||+||||.+ ..+.++.+++..+.++
T Consensus        23 ~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~  101 (393)
T PRK15011         23 VAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAW  101 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHH
Confidence            345555555566666655 578899999999999876655 55555555555 9999999875 5556666677777788


Q ss_pred             ccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchh--hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHH
Q 009757          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTER--ARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (526)
Q Consensus       184 ~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~  261 (526)
                      +  ++++.+++.+.+.|...+...+...+++.++.++++|  +...++.+.+.++|.++||++++.+.+++|||..|++.
T Consensus       102 ~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~  179 (393)
T PRK15011        102 N--RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSA  179 (393)
T ss_pred             h--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHH
Confidence            8  8898877666555555567788888888988876555  34567888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcC-chHHHHHHHHHHHHHHH
Q 009757          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK-MPTWSIIVANAMHSWGF  340 (526)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  340 (526)
                      ++..++..+..++..||.+++++... +               +.        +.   ..++ +..+......+......
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~--------~~---~~~~~~~~~~~~~~~~~~~~~~  232 (393)
T PRK15011        180 AVAFIVCGVMVWLFLPSMRKELPLAT-G---------------TL--------EA---PRRNRRDTLLLFVICTLMWGTN  232 (393)
T ss_pred             HHHHHHHHHHHHhhcCccCCCCcccc-c---------------cc--------cc---cccccccHHHHHHHHHHHHHHH
Confidence            88877777666666666543221100 0               00        00   0011 22233333334444455


Q ss_pred             HHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCc
Q 009757          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK  420 (526)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (526)
                      ..+..+.|.|+++.+|++..+.+.+.+...++.+++.++.|++.||+++|+       ..  ..+.....+.+......+
T Consensus       233 ~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~-------~~--~~~~~~~~~~~~~~~~~~  303 (393)
T PRK15011        233 SLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF-------LM--RVAAVAGVCFYAGMLMAH  303 (393)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HH--HHHHHHHHHHHHHHHHHh
Confidence            556678999998888999999998888877888889999999999999882       11  222222222222222223


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Q 009757          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL  500 (526)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  500 (526)
                      +.+......++.....+...+.......+..|+++|++.++++...++|..++|.+.|.+.|..| +...+.+.+++.++
T Consensus       304 ~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~  382 (393)
T PRK15011        304 SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIA  382 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHH
Confidence            34433333333333333333444556678888889999999999999999999999999999887 88888887777777


Q ss_pred             HHHHHHHH
Q 009757          501 SALFYIIF  508 (526)
Q Consensus       501 ~~~~~~~~  508 (526)
                      +.+..+..
T Consensus       383 ~~~~~~~~  390 (393)
T PRK15011        383 TLFCLLRI  390 (393)
T ss_pred             HHHHHHhh
Confidence            76666554

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=100.00  E-value=2.3e-31  Score=260.54  Aligned_cols=361  Identities=14%  Similarity=0.057  Sum_probs=275.4

Q ss_pred             HHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHH----HHHHHHHHHHHh
Q 009757          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIM----AWGVALWSLATF  179 (526)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l----~~~~~~~~~~~~  179 (526)
                      +.+.++..+.......|.+|.+.+++|.|..++|++.+++.+...++++++|+++||+|||...    .++..+..+  .
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~   86 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence            4455666667777888999999999999999999999999999999999999999999985433    222222222  2


Q ss_pred             hhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHH
Q 009757          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (526)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~  259 (526)
                      .+.++  ++++.+++.|+++|.+.+...|...++..++  +++|+++++....+.++|.+++|++++.+.+++|||..|+
T Consensus        87 ~~~~~--~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~  162 (382)
T TIGR00902        87 FSAGA--HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA  162 (382)
T ss_pred             HHHhh--hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence            33456  8899999999999999888899988887765  4788999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHH
Q 009757          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (526)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (526)
                      +.++..++ .+..+...|+.+++++. +                    +++....+++++++|+|+++...+..++....
T Consensus       163 ~~~~~~~~-~~~~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~  220 (382)
T TIGR00902       163 ILTAGLAF-MLIGFLIKPTIPPKDAI-P--------------------EDESQGDSAFIALLKNPMNLRFLAAVCLIQGA  220 (382)
T ss_pred             HHHHHHHH-HHHHHHcCCCCCCCccc-c--------------------ccccccchhHHHHHcChHHHHHHHHHHHHHHH
Confidence            87665333 22333333322111110 0                    00111233567899999999999888888888


Q ss_pred             HHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccC
Q 009757          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA  419 (526)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (526)
                      ...+..+.|.|+++ .|.+..+.|.+.....++.+++..+.+++.||++.|         ..+..+.+...+....+...
T Consensus       221 ~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~---------~~l~~~~~~~~~~~~~~~~~  290 (382)
T TIGR00902       221 HAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR---------DLLLISAIACVGRWAIIGAI  290 (382)
T ss_pred             HHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH---------HHHHHHHHHHHHHHHHHHhH
Confidence            88999999999988 899999999999988888999999999999999888         34456666666666666666


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHH-HHhHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Q 009757          420 KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNT-AGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLY  498 (526)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  498 (526)
                      ++.+..+...++-....+...+....++++.+++++++++++++. ...+|..++|.++|++.|+.| + ..|...+++.
T Consensus       291 ~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~  368 (382)
T TIGR00902       291 EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIA  368 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHH
Confidence            666666655555555555556666666777755688999999874 567999999999999999987 5 5566666666


Q ss_pred             HHHHHH
Q 009757          499 FLSALF  504 (526)
Q Consensus       499 ~~~~~~  504 (526)
                      +++.++
T Consensus       369 ~~~~~~  374 (382)
T TIGR00902       369 AAAFFL  374 (382)
T ss_pred             HHHHHH
Confidence            655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11010 ampG muropeptide transporter; Validated

Probab=100.00  E-value=5.1e-31  Score=264.86  Aligned_cols=379  Identities=15%  Similarity=0.140  Sum_probs=276.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHh-----cChHH-HHHHHHHH
Q 009757          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-----GGKII-MAWGVALW  174 (526)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~~-l~~~~~~~  174 (526)
                      ...+.+..+..+.........+|.+.++.|.+..++|.+ +.....+ ++.+++|+++||+     ||||. ++++.++.
T Consensus        14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~   91 (491)
T PRK11010         14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL   91 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence            344555556666667788888999999999999999997 4444444 6899999999999     99885 66777777


Q ss_pred             HHHHhhhhhcc-ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh-hc
Q 009757          175 SLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QA  252 (526)
Q Consensus       175 ~~~~~~~~~~~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~~  252 (526)
                      +++...+++.. .++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++.+ ..
T Consensus        92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~  171 (491)
T PRK11010         92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL  171 (491)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            77777766652 24788899999999999999999999999999999999999999999999999999999999988 57


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHH
Q 009757          253 GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVA  332 (526)
Q Consensus       253 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (526)
                      |||..|++.+++.++..+..++ .||+++..+.   ++                 +.++....++++.++++..|...+.
T Consensus       172 GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~---~~-----------------~~~~~~~~~l~~~~~~~~~~~~ll~  230 (491)
T PRK11010        172 GWQGMYWLMAALLIPCIIATLL-APEPTDTIPV---PK-----------------TLEQAVVAPLRDFFGRNNAWLILLL  230 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHh-cCCCcccccc---cc-----------------chhhhHHHHHHHHHcCcCHHHHHHH
Confidence            9999999998877766554443 4554321110   00                 0000112356778888888777666


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhh-HhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHH-HHHH
Q 009757          333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA-VPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF-IAPG  410 (526)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~-~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~  410 (526)
                      .++..........+.++|+.+.+|++..+.+.+.. ...++.+++.+++|++.||+++|+       ........ .+..
T Consensus       231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~-------~l~i~~~l~~l~~  303 (491)
T PRK11010        231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR-------ALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHH
Confidence            66666666677788888987778999999999874 555789999999999999999872       12211111 1111


Q ss_pred             HHHHhhccC-chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhH
Q 009757          411 IALIGLTAA-KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQ  488 (526)
Q Consensus       411 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~  488 (526)
                      ..+..+... ++.+......++.....+...+.......+..+ +.+++.+|+.+....+|..+++.+.|++.|..| |.
T Consensus       304 l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~  382 (491)
T PRK11010        304 AGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WP  382 (491)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hH
Confidence            111112222 233322222333222233334445566666666 588999999999999999999999999999987 89


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Q 009757          489 GFLLLTSLLYFLSALFYIIFST  510 (526)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~  510 (526)
                      ..|.+.+++.+.+++.....++
T Consensus       383 ~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        383 TFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999988888888777766644

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=100.00  E-value=2.8e-32  Score=266.44  Aligned_cols=347  Identities=18%  Similarity=0.200  Sum_probs=259.0

Q ss_pred             HHHHHHHHHHhhhhhhhhcchhh-hhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhh
Q 009757          102 SMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (526)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  180 (526)
                      ...++.++........+.+..|. +.+++|+|+.+.+++.+++.+++.+++++.|+++||+|||+.+.++.++..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~   83 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW   83 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            34566666777777889999995 88999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccc-chHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh---------
Q 009757          181 TPWAADT-SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS---------  250 (526)
Q Consensus       181 ~~~~~~~-~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~---------  250 (526)
                      ++++  + +++.+++.|+++|++.+. .+....++.|++|+++|++++++.....++|..+++.+++.+..         
T Consensus        84 ~~~~--~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  160 (366)
T TIGR00886        84 AGLA--VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP  160 (366)
T ss_pred             HHHH--hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9998  8 999999999999999664 56678999999999999999999998888888888888776654         


Q ss_pred             -hcCchhHH-HHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHH
Q 009757          251 -QAGIFGPF-VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWS  328 (526)
Q Consensus       251 -~~gw~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (526)
                       ..+||+.| +..+++.++..++.+...++.|++.++.++.+.      ..     .....++......++.+++|+++.
T Consensus       161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~~~~~~~~~~~~~~  229 (366)
T TIGR00886       161 AHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSF------KG-----ARWSVGTGALGDQLKVFRDRHTWI  229 (366)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhccc------cc-----ccccccchhHHHHHHHHhccchhh
Confidence             24899999 444555555555555555554432211100000      00     000001111125567888999988


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHH
Q 009757          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA  408 (526)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  408 (526)
                      ..+..++.......+..+.|.|+++.+|+++.+++.+.....+...+++++.|++.||+++|+       ..........
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-------~~~~~~~~~~  302 (366)
T TIGR00886       230 LALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR-------KLLMSFLGVA  302 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch-------hHHHHHHHHH
Confidence            888888777778888899999999989999999999999999999999999999999999872       2333333333


Q ss_pred             HHHHHHhhccCc--hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHH
Q 009757          409 PGIALIGLTAAK--SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFA  469 (526)
Q Consensus       409 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg  469 (526)
                      .+..++.+...+  +.+.......+.....+...........+..|+++|+++|+.+...++|
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       303 MGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence            333333333332  3333333333344444555566677777888899999999999888765

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=3.3e-32  Score=277.19  Aligned_cols=373  Identities=16%  Similarity=0.100  Sum_probs=261.0

Q ss_pred             cchhhhhhhcCCc---cchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Q 009757          120 VAIVPLSLAHGWS---RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (526)
Q Consensus       120 ~~~~~l~~~~~~s---~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  196 (526)
                      +..|.+.+|++++   ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++  ++++.++++|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS--PNYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc--ccHHHHHHHH
Confidence            5678899999999   8999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhc
Q 009757          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (526)
Q Consensus       197 ~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  276 (526)
                      ++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+   ||+.|++.+++.++..+.. ++.
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-Hhc
Confidence            999999999999999999999999999999999999999999999998877643   9999999988877766655 556


Q ss_pred             cCCCCCCCC-CChhHHHHHHHh----cccccc-----c--CCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHH
Q 009757          277 SSTPDRHPQ-ISKYELEYILRE----KQKPLL-----M--GNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL  344 (526)
Q Consensus       277 ~~~~~~~~~-~~~~~~~~~~~~----~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (526)
                      ||+|+.... .+.++..+..++    ......     .  +++..+......+++++++|.++...+...+..+......
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY  343 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            777643211 111121111111    000000     0  0000011123467889999988777665555444433333


Q ss_pred             HhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCch--h
Q 009757          345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS--P  422 (526)
Q Consensus       345 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  422 (526)
                      ..++.+..+ .+.+.   .......++..+++.++.+++.||++||         .......++.++..+.+...+.  .
T Consensus       344 ~~~~~~~~~-~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr---------~~~~~~~~~~~~~~l~~~~~~~~~~  410 (505)
T TIGR00898       344 YGLVLDLGN-LGGNI---YLDLFISGLVELPAKLITLLLIDRLGRR---------YTMAASLLLAGVALLLLLFVPVDLY  410 (505)
T ss_pred             HHHhccccc-cCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHcCCCch
Confidence            333333333 44442   2333455677788999999999999988         2333333333333333322222  2


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHH
Q 009757          423 VMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLS  501 (526)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  501 (526)
                      +......++..+......+....+..|..| +.|+++.|+.+++..+|++++|.+.+ +.+ .+ ....+.+.+++.+++
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~  487 (505)
T TIGR00898       411 FLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KW-LFLPLVLFGGLALLA  487 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHH
Confidence            333333334444444455666777888888 68999999999999999999999998 443 33 455666666666666


Q ss_pred             HHHHHHHhcCcee
Q 009757          502 ALFYIIFSTGERV  514 (526)
Q Consensus       502 ~~~~~~~~~~~~~  514 (526)
                      .++.+++++++++
T Consensus       488 ~~~~~~lpet~~~  500 (505)
T TIGR00898       488 GILTLFLPETKGV  500 (505)
T ss_pred             HHHHHcCcCCCCC
Confidence            6666665554443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.2e-32  Score=265.41  Aligned_cols=293  Identities=19%  Similarity=0.246  Sum_probs=252.9

Q ss_pred             ccccchhHHHHHHHHHHHHHHhhhhhhhhc-chhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHH
Q 009757           91 EFITSERVKVVSMLALALALCNADRVVMSV-AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW  169 (526)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~  169 (526)
                      ...++..+.++..++..++..+.+...++- .+..+.+|.+....+.+++.++++++++++.+++|.+.||++..+.+..
T Consensus        37 ~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~  116 (495)
T KOG2533|consen   37 KLLRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSV  116 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHH
Confidence            334455667777778888888887765543 3555778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 009757          170 GVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (526)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~  249 (526)
                      ..+++++..++....  +|++.+++.|++.|+..+..+|....+++.|+.+++|+..++++.+..++|.++|.+++..+.
T Consensus       117 ~~~~w~~~~~~~~~~--~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~  194 (495)
T KOG2533|consen  117 SGILWGLFGFLTAAV--HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVF  194 (495)
T ss_pred             HHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhh
Confidence            888888888777777  999999999999999999999999999999999999999999999999999999999998864


Q ss_pred             ------hhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcC
Q 009757          250 ------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK  323 (526)
Q Consensus       250 ------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (526)
                            ...|||+.|++.++++++..++.++..|+.|.+....+++|+....++.++..  .....++.++..+++.+++
T Consensus       195 ~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~d  272 (495)
T KOG2533|consen  195 KLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESP--SGGIENKFKWKGFKEALKD  272 (495)
T ss_pred             hhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhcc--CCCcccccCHHHHHHHHhc
Confidence                  34689999999999999999999999999999877777777654433333221  1111122677889999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHH
Q 009757          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML  387 (526)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~  387 (526)
                      |.+|...++.++.....+++.+|+|.|+++..|++..++..+.....++++++.++.|+++||.
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999996679999999999999999999999999999995

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=100.00  E-value=3e-31  Score=257.61  Aligned_cols=346  Identities=30%  Similarity=0.470  Sum_probs=293.1

Q ss_pred             HHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhh
Q 009757          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (526)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~  182 (526)
                      .+.+..+..........+..|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++..++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            34566677778888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHH
Q 009757          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG  262 (526)
Q Consensus       183 ~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~  262 (526)
                      +.  ++++.++++|++.|++.+...+...+++.|++|+++|++.+++.....++|..+++.+++.+.+..+||+.+++.+
T Consensus        83 ~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
T cd06174          83 FA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA  160 (352)
T ss_pred             Hh--ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            98  8999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHH
Q 009757          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV  342 (526)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (526)
                      +..++..+...+..                                               |.++...+..++.......
T Consensus       161 ~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~  193 (352)
T cd06174         161 ILGLLLALLLLFLL-----------------------------------------------RLLLLLALAFFLLSFGYYG  193 (352)
T ss_pred             HHHHHHHHHHHHHH-----------------------------------------------HHHHHHHHHHHHHHhHHHH
Confidence            88777666554431                                               4566777788888888899


Q ss_pred             HHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchh
Q 009757          343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP  422 (526)
Q Consensus       343 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (526)
                      ...+.|.+.++.+|.+..+.+.......++..++.++.+++.||+++|+       . ....+.....+........++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~i~~~~~~~~~~~  265 (352)
T cd06174         194 LLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR-------L-LLLIGLLLAALGLLLLALAPSL  265 (352)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------H-HHHHHHHHHHHHHHHHHHhccH
Confidence            9999999999977999999999999999999999999999999999882       0 3344444444444444444444


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHH
Q 009757          423 VMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLS  501 (526)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  501 (526)
                      +......++.....+...+.......+..| ++|++..|+.+...+++..+++.+.|.+.|..| +...+.+.+++.+++
T Consensus       266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~  344 (352)
T cd06174         266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLA  344 (352)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHH
Confidence            444444444444445556667777777777 799999999999999999999999999998876 888888888887777


Q ss_pred             HHHHH
Q 009757          502 ALFYI  506 (526)
Q Consensus       502 ~~~~~  506 (526)
                      .+...
T Consensus       345 ~i~~~  349 (352)
T cd06174         345 ALLLL  349 (352)
T ss_pred             HHHhe
Confidence            66544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=100.00  E-value=4.9e-31  Score=259.00  Aligned_cols=365  Identities=15%  Similarity=0.111  Sum_probs=267.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhh
Q 009757          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (526)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  180 (526)
                      +.+++...+..++..+..++.+|.+++++|.++.+.|++.+.+.+++.+++++.|++.||+|||+++.++.++++++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            45666777777888888899999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hhhcc-ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhh--------
Q 009757          181 TPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--------  251 (526)
Q Consensus       181 ~~~~~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~--------  251 (526)
                      +..+. .++++.+++.|++.|+|.|...+..+.++.++.|+++|++.+++.+...++|..+|+.+++.+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            54431 268999999999999999999999999999999999999999999999999999999999877532        


Q ss_pred             ------------------cCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCC
Q 009757          252 ------------------AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATV  313 (526)
Q Consensus       252 ------------------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (526)
                                        .+||++|++.+++.++..++..+. +. |+.++.                   ++  ++...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~-~~-p~~~~~-------------------~~--~~~~~  221 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLT-KM-PALNHS-------------------DA--KQISF  221 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CCCCcc-------------------cc--ccccc
Confidence                              369999999888776655443322 21 111100                   00  00111


Q ss_pred             CchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh-cCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcC
Q 009757          314 IPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY-HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT  392 (526)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~  392 (526)
                      ..+.++++|+|+++...+..+++........++++.|.++.. +.+...++...+....+..+|+++++++.||+++|+ 
T Consensus       222 ~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~-  300 (410)
T TIGR00885       222 SASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK-  300 (410)
T ss_pred             hhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-
Confidence            224557889999999888888888888888899999997632 344444455666667788999999999999998872 


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHH
Q 009757          393 SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAIL  472 (526)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~  472 (526)
                              ...+..++..+..+.....++.........++++...+. +..+....+..+++..++.+...+. .+|+++
T Consensus       301 --------~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~-~~Gga~  370 (410)
T TIGR00885       301 --------VLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMA-IIGGGI  370 (410)
T ss_pred             --------HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHH-Hhccch
Confidence                    233333333333333333334333444444454444444 6666666655565444433333332 399999


Q ss_pred             HHHHHhhhcccc-----chhHHHHHHHHHHHH
Q 009757          473 GTVGAGFFVELV-----GSFQGFLLLTSLLYF  499 (526)
Q Consensus       473 ~~~~~g~l~~~~-----g~~~~~~~~~~~~~~  499 (526)
                      +|++.|.+.|..     |++...|++...+.+
T Consensus       371 ~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       371 VPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             HHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            999999999954     346677766544443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.3e-33  Score=261.74  Aligned_cols=380  Identities=16%  Similarity=0.177  Sum_probs=292.0

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHH
Q 009757           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (526)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  173 (526)
                      .+..++.+.++++...+++++++.+....+.+.+.+|++++..|++.+.+.+.+.+++|+.|+++|||+||+++.+|..+
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i  107 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI  107 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence            34457788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC
Q 009757          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (526)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g  253 (526)
                      +.++.++++++  ..||+++++|.+.|+|.+...|..+++++|.+|.++|++++++++.+..+|..+|.+.+..+.+..+
T Consensus       108 W~~Av~~~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  108 WTLAVFASGFS--NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            99999999999  9999999999999999999999999999999999999999999999999999999999999887665


Q ss_pred             -chhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHH
Q 009757          254 -IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVA  332 (526)
Q Consensus       254 -w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (526)
                       ||+.|++.+++++++.++.+++.+|+++...++.+.+.             .........+++.+.+.|+|.+....+.
T Consensus       186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~-------------~~~~~~ts~~kDl~~l~~~~v~v~~sl~  252 (493)
T KOG1330|consen  186 WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGEN-------------KMVKPFTSVWKDLKVLAKIKVFVLSSLG  252 (493)
T ss_pred             ceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCC-------------cCCCCccchHHHHHHHHccCceeeehHH
Confidence             99999999999999999999988887653221111100             1112334456777778888888888888


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHH---hcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchh--HHHHHHHHHH
Q 009757          333 NAMHSWGFFVILSWMPIYFNFV---YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLT--RKILQSIGFI  407 (526)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~--~~~~~~~~~~  407 (526)
                      +....+....+.-|.|.++...   .|.+.....++..+...++.+|.+++|.++||+.++..+....  .......+..
T Consensus       253 ~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~  332 (493)
T KOG1330|consen  253 IIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAP  332 (493)
T ss_pred             HHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhh
Confidence            8877777777777777666543   3556667777788888899999999999999987753331111  1122233333


Q ss_pred             HHHHHHHhhccC--chhHHHHHHHHHHHHHHhhhhhhHHHHHH-hhcccchhhHHHHHHHHHhHH-HHHHHHHHhhhccc
Q 009757          408 APGIALIGLTAA--KSPVMASAWLTLAIGMKSFSHSGFLVNLQ-EIAPQYSGVLHGISNTAGTFA-AILGTVGAGFFVEL  483 (526)
Q Consensus       408 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~lg-~~~~~~~~g~l~~~  483 (526)
                      .....+.++...  .+.+..+++++++.......+....-+.. -++|++|.+++++...+..+. .+-+|.+.|.+.|+
T Consensus       333 ~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~  412 (493)
T KOG1330|consen  333 LSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK  412 (493)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence            333333333322  22333344444444444444444433333 445689999999988887754 45555599999987


Q ss_pred             cchhH
Q 009757          484 VGSFQ  488 (526)
Q Consensus       484 ~g~~~  488 (526)
                      .-++.
T Consensus       413 l~g~~  417 (493)
T KOG1330|consen  413 LRGYK  417 (493)
T ss_pred             hhCCC
Confidence            54343

>TIGR00896 CynX cyanate transporter

Probab=100.00  E-value=5.6e-31  Score=255.73  Aligned_cols=334  Identities=16%  Similarity=0.164  Sum_probs=249.3

Q ss_pred             hhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHH
Q 009757          115 RVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLA  194 (526)
Q Consensus       115 ~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  194 (526)
                      ...+++.+|.+.+++|.+.++.|++.+++.++..+++++.|+++||+|||+++.++.++..++.+.+ ..  ++++.+++
T Consensus        16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~--~~~~~l~~   92 (355)
T TIGR00896        16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA--PGTALLFA   92 (355)
T ss_pred             cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh--ccHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999888888777 66  78999999


Q ss_pred             HHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc--CchhHHHHHHHHHHHHHHHH
Q 009757          195 MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--GIFGPFVIFGLSGFLWVLVW  272 (526)
Q Consensus       195 ~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~--gw~~~f~~~~~~~~~~~~~~  272 (526)
                      .|++.|++.+...+....++.|++| ++|++++++.+...++|..+++.+++.+.+..  +||+.|.+.+++.++.... 
T Consensus        93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~-  170 (355)
T TIGR00896        93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLA-  170 (355)
T ss_pred             HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-
Confidence            9999999999888888889999986 68999999999999999999999999887764  3999988777654443222 


Q ss_pred             HhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009757          273 LSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFN  352 (526)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (526)
                        ..++.+++++.                   ++    .......++.+|+|.++...+..++....++....++|.|++
T Consensus       171 --~~~~~~~~~~~-------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~  225 (355)
T TIGR00896       171 --WIPQVRRRVAA-------------------NQ----TTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILI  225 (355)
T ss_pred             --HhhhhccccCC-------------------CC----CCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              22222111100                   00    001123346788888888777777777788888899999998


Q ss_pred             HHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 009757          353 FVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLA  432 (526)
Q Consensus       353 ~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (526)
                      + +|++..+.+.+.+...++.++++++.|++.||+++|+        .....+.+...++.+.+.............+.+
T Consensus       226 ~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  296 (355)
T TIGR00896       226 S-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQR--------GIVAVLAVLQLVGLCGLLFAPMHGLWAWALVLG  296 (355)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch--------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            8 6999999999999999999999999999999996541        222222222222222222222222222223333


Q ss_pred             HHHHhhhhhhHHHHH-Hhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhH
Q 009757          433 IGMKSFSHSGFLVNL-QEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQ  488 (526)
Q Consensus       433 ~~~~~~~~~~~~~~~-~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~  488 (526)
                      .+.+ ...+...... .+..+ ++++...++.+...+++..++|.+.|++.|+.|+|.
T Consensus       297 ~~~g-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       297 LGQG-GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             Hhhh-hHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            3332 3233333333 34443 577899999999999999999999999999988654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10054 putative transporter; Provisional

Probab=100.00  E-value=9.5e-31  Score=256.70  Aligned_cols=360  Identities=14%  Similarity=0.102  Sum_probs=259.1

Q ss_pred             HHHHHHhhhhhhhhcchh-hhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhc
Q 009757          106 LALALCNADRVVMSVAIV-PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA  184 (526)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  184 (526)
                      ...++.........+.+| .+.+++|++..++|++.+++.++..+++++.|+++||+|||++++++.++.+++.++.++.
T Consensus        14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~   93 (395)
T PRK10054         14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence            444445555556555555 4567899999999999999999999999999999999999999999999999999988888


Q ss_pred             cccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 009757          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLS  264 (526)
Q Consensus       185 ~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~  264 (526)
                        ++++.++++|++.|.+.+...+...++..|.+|+++|++++++.....++|.++||.+++++.+ .+|+..|++.+++
T Consensus        94 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~  170 (395)
T PRK10054         94 --NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAIC  170 (395)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHH
Confidence              8999999999999988888888899999999999999999999999999999999999998875 7999999998887


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHH
Q 009757          265 GFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL  344 (526)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (526)
                      .++..++..+..++.++++++    +               ++     ...+.++.+|+|+++...+..++.........
T Consensus       171 ~~i~~i~~~~~~~~~~~~~~~----~---------------~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  226 (395)
T PRK10054        171 SAFPLVFIQIWVQRSEKAIAT----E---------------TG-----SVWSPSVLLQDKALLWFTCSGFLASFVSGAFA  226 (395)
T ss_pred             HHHHHHHHHHHHhcccccccc----c---------------hh-----hhhhhhhhccCceehHHHHHHHHHHHHHHHhh
Confidence            776655554444433221110    0               00     00122577889998888777777777766666


Q ss_pred             HhHHHHHHHH--hcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhcc-Cch
Q 009757          345 SWMPIYFNFV--YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA-AKS  421 (526)
Q Consensus       345 ~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  421 (526)
                      .+.+.|....  .+.+....+.+.....+.........+++.||.++|         .....++....+.+..+.. .++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~  297 (395)
T PRK10054        227 SCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR---------PLMTAGTLCFVIGLVGFIFSGNS  297 (395)
T ss_pred             hhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch---------hHHHHHHHHHHHHHHHHHHcchH
Confidence            6777777543  345555667777776666666777888889988777         2233333333333333322 233


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Q 009757          422 PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL  500 (526)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  500 (526)
                      .+.......+.........+.....+.+..| +.++++.+..+ ...+|..+||.++|.+.|+.| +...|.+.+.+..+
T Consensus       298 ~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-~~~~~~~~~~~~~~  375 (395)
T PRK10054        298 LLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-PWSLFVILALAIVA  375 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-hhhHHHHHHHHHHH
Confidence            3322222222222233334455566666666 68899988765 677999999999999999997 66677665555444


Q ss_pred             HHH
Q 009757          501 SAL  503 (526)
Q Consensus       501 ~~~  503 (526)
                      +.+
T Consensus       376 ~~~  378 (395)
T PRK10054        376 AWL  378 (395)
T ss_pred             HHH
Confidence            433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=100.00  E-value=4.2e-30  Score=251.73  Aligned_cols=357  Identities=12%  Similarity=0.044  Sum_probs=261.3

Q ss_pred             HHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcCh----HHHHHHHHHHHHHHhhhhh
Q 009757          108 LALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK----IIMAWGVALWSLATFLTPW  183 (526)
Q Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr----~~l~~~~~~~~~~~~~~~~  183 (526)
                      ++........+.+.+|.+.+++|.|..++|++.+++.++..++++++|+++||+|||    +.+.++..+.  .......
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence            344445556888899999999999999999999999999999999999999999994    3333332222  2223334


Q ss_pred             ccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 009757          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (526)
Q Consensus       184 ~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~  263 (526)
                      .  +++|.+++.|++.|++.+...+...+++.++  +++|+++.+......++|..+||++++++.+++|||..|++.++
T Consensus        91 ~--~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~  166 (382)
T PRK11128         91 A--HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA  166 (382)
T ss_pred             c--ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            4  7899999999999999998899888888877  46788889999999999999999999999999999999988776


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 009757          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (526)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (526)
                      ..++..+. .+..|+.+++.+    +                + ++.++...++++++|+|.++...+..++........
T Consensus       167 ~~~~~~~~-~~~~~~~~~~~~----~----------------~-~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~  224 (382)
T PRK11128        167 GVASMLLG-QLLRPTIMPQGE----S----------------R-QQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAY  224 (382)
T ss_pred             HHHHHHHH-HHccCCCCCccc----c----------------c-cccccccchHHHHHcChhHHHHHHHHHHHHHHhHhH
Confidence            55444333 333333211100    0                0 001112346789999999998888788777777778


Q ss_pred             HHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhH
Q 009757          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV  423 (526)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (526)
                      ..+.|.|+++ .|.+..+.+.+.+...++..+..++.+++.||++++         ..+..+.+..++..+.+...++.+
T Consensus       225 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~  294 (382)
T PRK11128        225 YGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR---------DLLLLSAICGVVRWGLMGSTTALP  294 (382)
T ss_pred             HHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHHHHHhhhhHH
Confidence            8889999977 799999999999988888899999999999999888         233444455555444455555666


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHH-HhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH
Q 009757          424 MASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTA-GTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSA  502 (526)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  502 (526)
                      ..+...++.....+...+....+..+..++++++..++.+.. ..+|..+||.+.|.+.|..| . ..++..+++.++++
T Consensus       295 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        295 WLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHH
Confidence            555444443333444455555666666666778889988744 56777999999999999988 4 35555555555544


Q ss_pred             HH
Q 009757          503 LF  504 (526)
Q Consensus       503 ~~  504 (526)
                      ++
T Consensus       373 ~~  374 (382)
T PRK11128        373 FI  374 (382)
T ss_pred             HH
Confidence            33

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=100.00  E-value=3.4e-30  Score=256.30  Aligned_cols=378  Identities=20%  Similarity=0.173  Sum_probs=294.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhh
Q 009757          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (526)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  180 (526)
                      +..++.+.+++.+...+.....+.+..+..-|+...+++.++..+...+.++++|.++||++||++++.+.++.++..++
T Consensus        12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~   91 (524)
T PF05977_consen   12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALL   91 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence            34455666677777778888888888888889999999999999999999999999999999999999999887765544


Q ss_pred             hhhc---cccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhH
Q 009757          181 TPWA---ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGP  257 (526)
Q Consensus       181 ~~~~---~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~  257 (526)
                      .++.   ...+.|.+++.-++.|++.+...|+.++++.+..|+++...++++.+...++..++||.++|.++..+|-.+.
T Consensus        92 L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~  171 (524)
T PF05977_consen   92 LAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAA  171 (524)
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            3332   2257889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHH
Q 009757          258 FVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHS  337 (526)
Q Consensus       258 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (526)
                      |.+.++..++..+......++.+++..  .                  +++........++.+.++|.+...++..++.+
T Consensus       172 f~inalsfl~~i~~l~~~~~~~~~~~~--~------------------~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~  231 (524)
T PF05977_consen  172 FLINALSFLISILALLRWKPPPPPSSL--P------------------RERFFSALREGLRYVRSSPPLRSVLLRSFLFN  231 (524)
T ss_pred             HHHHHHHHHHHHHHHHHcccccccccc--c------------------hhhhhhhHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            999887766655444443332211110  0                  11111223446667777888777766666666


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc
Q 009757          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (526)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (526)
                      +....+...+|.+.++.+|.++...|++.+..+++.++|.++.+++.+|++++         .++..+.+..++.++.+.
T Consensus       232 l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~---------~lv~~~~~~~a~~~~~la  302 (524)
T PF05977_consen  232 LFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR---------RLVLLASLLFALALLLLA  302 (524)
T ss_pred             HhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc---------hhhHHHHHHHHHHHHHHh
Confidence            66666778899999999999999999999999999999999999988887765         234455556666666677


Q ss_pred             cCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHH
Q 009757          418 AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSL  496 (526)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~  496 (526)
                      ..++.+.....+++.+...........+..+...| +.+|+++++++++...+..+|..+.|.+.+..| ....+.+.++
T Consensus       303 l~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~  381 (524)
T PF05977_consen  303 LSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGA  381 (524)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHH
Confidence            77777766665555444444555555566666666 699999999999999999999999999999998 6777777777


Q ss_pred             HHHHHHHHHHHH
Q 009757          497 LYFLSALFYIIF  508 (526)
Q Consensus       497 ~~~~~~~~~~~~  508 (526)
                      +.+++.++....
T Consensus       382 ~lll~~~~~~~~  393 (524)
T PF05977_consen  382 ALLLSALIALRF  393 (524)
T ss_pred             HHHHHHHHHHHh
Confidence            666666655544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00883 2A0106 metabolite-proton symporter

Probab=100.00  E-value=2.5e-30  Score=255.35  Aligned_cols=358  Identities=17%  Similarity=0.127  Sum_probs=255.4

Q ss_pred             HHHhhhhhhhhcchhhhhhhcC--CccchhhHHHHH-----HHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhh
Q 009757          109 ALCNADRVVMSVAIVPLSLAHG--WSRSFSGIVQSS-----FLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (526)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~--~s~~~~g~~~s~-----~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~  181 (526)
                      +.++++...++...+.+.+++.  .++.+.+.+.+.     ..++..+++++.|+++||+|||+++.++.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4567777788888888877754  455666665543     333445788999999999999999999999999999999


Q ss_pred             hhccccchH--------HHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHH----
Q 009757          182 PWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM----  249 (526)
Q Consensus       182 ~~~~~~~~~--------~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~----  249 (526)
                      +++  ++++        .++++|+++|++.+...+....++.|++|+++|++..++...+..+|.++++.++..+.    
T Consensus        83 ~~~--~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~  160 (394)
T TIGR00883        83 GLL--PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG  160 (394)
T ss_pred             hhC--CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            998  7764        48889999999999999999999999999999999999999999999999998887654    


Q ss_pred             ----hhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCch
Q 009757          250 ----SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP  325 (526)
Q Consensus       250 ----~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (526)
                          +.++||+.|++.+++.++..+. ....+|+++..+     ++                ++++....+.++.+++++
T Consensus       161 ~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~----------------~~~~~~~~~~~~~~~~~~  218 (394)
T TIGR00883       161 DDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETPVFEK-----AQ----------------EKHKKKRGPIRETLTKHR  218 (394)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHH-----HH----------------hccccccCCHHHHHHhch
Confidence                3568999998877665544333 222333321110     00                001112234566777765


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHH
Q 009757          326 --TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (526)
Q Consensus       326 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (526)
                        ++...+..++..........++|.|+++.+|.+..+.+.......++..++.++.+++.||+++|+        ....
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~--------~~~~  290 (394)
T TIGR00883       219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP--------VLII  290 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH--------HHHH
Confidence              677777777777778888899999998878999999999999999999999999999999999882        1221


Q ss_pred             HHHHHHHHH---HHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHH-HHHHhHHHHHHHHHHh
Q 009757          404 IGFIAPGIA---LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGIS-NTAGTFAAILGTVGAG  478 (526)
Q Consensus       404 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~-~~~~~lg~~~~~~~~g  478 (526)
                      .........   .......++.+......++.....+...+.......+..| ++|+++.|+. +....+|..++|.+.|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g  370 (394)
T TIGR00883       291 FTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAA  370 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHH
Confidence            221111111   1112222333333333333333344455566677777777 6899999985 4455688889999999


Q ss_pred             hhccccchhHHHHHHHHHHH
Q 009757          479 FFVELVGSFQGFLLLTSLLY  498 (526)
Q Consensus       479 ~l~~~~g~~~~~~~~~~~~~  498 (526)
                      .+.|+.|.+...++...++.
T Consensus       371 ~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       371 ALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHHcCcchhHHHHHHHHH
Confidence            99998875555555544433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=100.00  E-value=2.9e-29  Score=247.59  Aligned_cols=374  Identities=11%  Similarity=0.094  Sum_probs=263.7

Q ss_pred             HHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHh-----cChH-HHHHHHHHHHHH
Q 009757          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-----GGKI-IMAWGVALWSLA  177 (526)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~-~l~~~~~~~~~~  177 (526)
                      ....++.++.........+|.+.++.|+|.+++|++..+...  .+..+++|+++||+     |||| .+.++.++.+++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            455677777888888899999999999999999999777665  58899999999999     8775 788888888887


Q ss_pred             Hhhhhhcc-ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhh-cCch
Q 009757          178 TFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIF  255 (526)
Q Consensus       178 ~~~~~~~~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~-~gw~  255 (526)
                      ..+.++.. ..+++.+++..++.++..+...++..+++.|++|+++|+++.++...+.++|.++++.+++.+.+. .|||
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~  161 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG  161 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence            77777662 235788888888889888999999999999999999999999999999999999999999999885 5999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHH
Q 009757          256 GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM  335 (526)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (526)
                      ..|++.+++.++..+.. +..||++++.++. ++                   .+++..+++++++|+|.++..++..++
T Consensus       162 ~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~-~~-------------------~~~~~~~~~~~l~~~~~~~~~l~~~~l  220 (402)
T PRK11902        162 NTYLLMAGLMLAGALTT-LWAPEPEVPARPP-RS-------------------LGEAVVGPLRDFFSRRGAWALLLLIVL  220 (402)
T ss_pred             HHHHHHHHHHHHHHHHH-HhcCCCccccccc-ch-------------------hHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            99999888776654433 3445443221110 00                   000123467789999998887777666


Q ss_pred             HHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhH-HHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHH-HHHHHHH
Q 009757          336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW-SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF-IAPGIAL  413 (526)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~  413 (526)
                      ..........+.+.++.+.+|+++.+.+++....+ ++.+++.++++++.||+++|+       ........ ....+.+
T Consensus       221 ~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~-------~l~~~~~~~~l~~l~~  293 (402)
T PRK11902        221 YKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR-------SLMLFGVLQAVSNLGY  293 (402)
T ss_pred             HHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHH
Confidence            66554444455566677768999999999876655 457899999999999999872       22111111 1111222


Q ss_pred             HhhccC-chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHH
Q 009757          414 IGLTAA-KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFL  491 (526)
Q Consensus       414 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~  491 (526)
                      ..+... ++.+.......+.....+..............+ +..++..++.+....++..+++.++|.+.|..| +...|
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f  372 (402)
T PRK11902        294 WVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYG-WPGFY  372 (402)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHH
Confidence            222222 333433333322222333333333333333333 344556677777778888878889999999998 88888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 009757          492 LLTSLLYFLSALFYIIF  508 (526)
Q Consensus       492 ~~~~~~~~~~~~~~~~~  508 (526)
                      ...+++.++++++....
T Consensus       373 ~~~~~~~~~~~~~~~~~  389 (402)
T PRK11902        373 LMTVVIALPGLALLWLM  389 (402)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888877776655443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.98  E-value=9.2e-30  Score=252.76  Aligned_cols=379  Identities=15%  Similarity=0.079  Sum_probs=244.3

Q ss_pred             HHHHHHhhhhhhhhcchhhh-hhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhh-
Q 009757          106 LALALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW-  183 (526)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~l-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-  183 (526)
                      ...++.....+...+.+|.+ .+++|++..++|++.+++.++..++++++|+++||+|||++++++..+.+++...... 
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   96 (420)
T PRK09528         17 LFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIY   96 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555555554 5559999999999999999999999999999999999999998876666554332211 


Q ss_pred             cccc-----chHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHH
Q 009757          184 AADT-----SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (526)
Q Consensus       184 ~~~~-----~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f  258 (526)
                      ...+     .+...++++++.|.+.....+....+..+.  .+++++.++......++|..++|++++.+.+ .+|+..|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f  173 (420)
T PRK09528         97 VFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINF  173 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhH
Confidence            1001     111123334444444444344444443322  3466778889999999999999999998876 5899999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHH
Q 009757          259 VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSW  338 (526)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (526)
                      ++.+++.++..++.++..++++++.+.. ++               ++++++....++.++.+|+|.++...+..++...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~  237 (420)
T PRK09528        174 WLGSGSALILLVLLFFAKPDAPSTAKVA-NA---------------LGANASAVSLKDALALLKLPKFWFLVLYVIGVAC  237 (420)
T ss_pred             HHHHHHHHHHHHHHhcccccccchhhhc-cc---------------hhcccccccHHHHHHHccCCCeEeehHHHHHHHH
Confidence            9988887776666555544433221100 00               0000111223455678889988776665555555


Q ss_pred             HHHHHHHhHHHHHHHHh---cCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHh
Q 009757          339 GFFVILSWMPIYFNFVY---HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG  415 (526)
Q Consensus       339 ~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (526)
                      .+.....+.|.|+.+.+   +.+..+.+.+.++..++..++.++.|++.||+++|+         ....+.++.++....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~---------~~~~~~~l~~~~~~l  308 (420)
T PRK09528        238 FYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN---------ALLLAGTIMAVRIIG  308 (420)
T ss_pred             HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch---------hhHHHHHHHHHHHHH
Confidence            55556667788877643   455567788888888889999999999999999983         223333333333333


Q ss_pred             hccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHH-HHHHHhHHHHHHHHHHhhhccccchhHHHHHH
Q 009757          416 LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGI-SNTAGTFAAILGTVGAGFFVELVGSFQGFLLL  493 (526)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~-~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~  493 (526)
                      ....++++..+....+..............+..+..| +.+++..+. .++...+|.+++|.+.|++.|..| +...|..
T Consensus       309 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~  387 (420)
T PRK09528        309 SGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLI  387 (420)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHH
Confidence            4444455544433333222222333333445555444 678877765 677788999999999999999988 8888888


Q ss_pred             HHHHHHHHHHHHHHHhcCce
Q 009757          494 TSLLYFLSALFYIIFSTGER  513 (526)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~  513 (526)
                      .+++.++..++.+...++++
T Consensus       388 ~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        388 LGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHHHHHHHHHHHHHhcCCc
Confidence            87777666655555444433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.98  E-value=6.7e-29  Score=223.55  Aligned_cols=372  Identities=17%  Similarity=0.221  Sum_probs=288.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHH
Q 009757           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (526)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  177 (526)
                      +..+..+.+..+----.....+|.++.+.+++|+|.+..|++.++..+...+.+++..+++.|+|.++.+..++++.+++
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G   90 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG   90 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33333333333333345567889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-Cchh
Q 009757          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFG  256 (526)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~-gw~~  256 (526)
                      .++-...   +.+.++.+-.+.|.|.+......++++.+.|| |+-+..+++|....++|..+++.+...+.++. |||.
T Consensus        91 ~~iR~~~---~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~  166 (395)
T COG2807          91 ILIRSLG---GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG  166 (395)
T ss_pred             HHHHhcc---cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence            9998774   67889999999999999999999999999996 78899999999999999999999999988877 7999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHH
Q 009757          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (526)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (526)
                      ...+.+.++++.++.++....+ +. ..                        ..+....+-..++|+|..|.+.+.+.++
T Consensus       167 aL~~WAl~allAl~~WlPq~~r-~~-~~------------------------~~~~~~~~~~~vw~~~~aW~vtLfmGlq  220 (395)
T COG2807         167 ALGFWALLALLALLIWLPQALR-EQ-AA------------------------SIATKLVSVRKVWRSPLAWQVTLFMGLQ  220 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhhccc-cc-cc------------------------ccccccccccccccCchhHHHHHHHHhh
Confidence            9999999988887776654211 10 00                        0001111223688999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhh
Q 009757          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (526)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (526)
                      +..+|....|+|.++.| .|+|+.++|.+.+...+.+.+..+....+.+|...++        ........+..++++.+
T Consensus       221 S~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r--------~~~~~~~~~~l~G~~G~  291 (395)
T COG2807         221 SLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQR--------PLVVLALLLMLVGLVGL  291 (395)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc--------hHHHHHHHHHHHHHHHH
Confidence            99999999999999999 6999999999999999999999999999999865552        23333333333333333


Q ss_pred             ccCchhHHHHHHHHHHHHHHhhhhhhHHHHHH-hhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHH
Q 009757          417 TAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ-EIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTS  495 (526)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~  495 (526)
                      .+.+........++++.+.++..+.....+.. ...|+..+.-.|+.+.++++-.+.||.+.|++.|..|+|...+....
T Consensus       292 ~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~  371 (395)
T COG2807         292 LLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLA  371 (395)
T ss_pred             HHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHH
Confidence            23322222222344555544444333333333 33457889999999999999999999999999999999998888877


Q ss_pred             HHHHHHHHHHHHH
Q 009757          496 LLYFLSALFYIIF  508 (526)
Q Consensus       496 ~~~~~~~~~~~~~  508 (526)
                      .+.++..+.-+..
T Consensus       372 ~~~i~m~i~Gl~a  384 (395)
T COG2807         372 LATLLMLIFGLRA  384 (395)
T ss_pred             HHHHHHHHHHhhc
Confidence            7666655554443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.98  E-value=8.8e-29  Score=226.37  Aligned_cols=359  Identities=16%  Similarity=0.131  Sum_probs=278.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHH
Q 009757           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT  178 (526)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  178 (526)
                      ..+..++...++.++......+.+|.+.+.++++..+.+++..+++.++.+.+++.|++.+|+|+|+.+++|+.++++++
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~   92 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA   92 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            44556667777778888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhc-cccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhh------
Q 009757          179 FLTPWA-ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ------  251 (526)
Q Consensus       179 ~~~~~~-~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~------  251 (526)
                      .++.-+ ...+|..++++-++.|.|.+...++.+.++....++++-.+.+++.+..+++|.+++|++++.++..      
T Consensus        93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~  172 (422)
T COG0738          93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM  172 (422)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence            987422 2278899999999999999999999999999999998899999999999999999999999988762      


Q ss_pred             -------------cCchhHHHHHHHHHHHHHHHHHhhc-cCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchH
Q 009757          252 -------------AGIFGPFVIFGLSGFLWVLVWLSAT-SSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF  317 (526)
Q Consensus       252 -------------~gw~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (526)
                                   -.|+.+|...+...+++.+.....+ |+.++..+                     +  ..+......
T Consensus       173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~---------------------~--~~~~~~~~~  229 (422)
T COG0738         173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAP---------------------S--LGASGSAGL  229 (422)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccc---------------------c--ccccccchH
Confidence                         2478888888877766665544432 22211111                     0  001111156


Q ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchh
Q 009757          318 RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLT  397 (526)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~  397 (526)
                      .+++++|+++...+..+++......+.+|++.|+.+..|.+..+++...+.++.+.++|++++.++.+|+...       
T Consensus       230 ~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~-------  302 (422)
T COG0738         230 SSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE-------  302 (422)
T ss_pred             HHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-------
Confidence            6899999999999999999999999999999999998899999999999999999999999999999998776       


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHH
Q 009757          398 RKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGA  477 (526)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~  477 (526)
                       +.+...++... +.++.....++.+......+++.+. +...|...+...+..|++...+. ..-.+.-.|+++.|.+.
T Consensus       303 -k~Laf~a~~~i-ll~~~~~l~~g~v~~~~l~~ig~F~-simfPTIfslal~~l~~~ts~~s-~~l~maivGGAiiP~l~  378 (422)
T COG0738         303 -KYLAFYALIAI-LLLLAVALIGGVVALYALFLIGLFN-SIMFPTIFSLALKNLGEHTSVGS-GLLVMAIVGGAIIPPLQ  378 (422)
T ss_pred             -HHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHh-HHHHHHHHHHHHhccCccccccc-eeeeeheecchHHHHHH
Confidence             23333332322 2333333445555455445454444 45555555555555555444443 44456778999999999


Q ss_pred             hhhccccchhHHHHH
Q 009757          478 GFFVELVGSFQGFLL  492 (526)
Q Consensus       478 g~l~~~~g~~~~~~~  492 (526)
                      |++.|..|. ...+.
T Consensus       379 G~i~d~~g~-~~~~~  392 (422)
T COG0738         379 GVIADMFGI-QLTFL  392 (422)
T ss_pred             HHHHHhhhh-HHHHH
Confidence            999999883 33333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.97  E-value=2.1e-28  Score=241.20  Aligned_cols=376  Identities=15%  Similarity=0.078  Sum_probs=258.0

Q ss_pred             HHHHHHHHHHhhhhhhhhcchhhh-hhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhh
Q 009757          102 SMLALALALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (526)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  180 (526)
                      +.+...+++.+.....+.+.+|.+ .+++|.++.+.|++.+++.++..++++++|+++||+|||+.++.+.+..+++...
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~   84 (396)
T TIGR00882         5 WMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAP   84 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            344455566666666777777765 4568999999999999999999999999999999999999998877766554432


Q ss_pred             h---hhcc---ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCc
Q 009757          181 T---PWAA---DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (526)
Q Consensus       181 ~---~~~~---~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw  254 (526)
                      .   .+..   .+.++.+++.+++.|++.+...+....+..+..  ++++..++......++|.++||.+++.+.+ .+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~  161 (396)
T TIGR00882        85 FFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDP  161 (396)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCc
Confidence            2   1110   012344567789999998888888888877754  334567788888889999999999998865 599


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHH
Q 009757          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (526)
Q Consensus       255 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (526)
                      |.+|++.+++.++..++.+...+++|+++..   ++       .      .+.++++...++.++++|+|.++...+..+
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~------~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  225 (396)
T TIGR00882       162 QIVFWLGSGFALILMLLLMFAKPKAPSSATV---AN-------A------LGANASAFSLKLALELFRQRKFWMFVLYVV  225 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCchhhhh---hc-------c------cccccCCCCHHHHHHHHcCCcHHHHHHHHH
Confidence            9999999888877766555544443321100   00       0      000111223356788999999887777766


Q ss_pred             HHHHHHHHHHHhHHHHHHHHh---cCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHH
Q 009757          335 MHSWGFFVILSWMPIYFNFVY---HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI  411 (526)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  411 (526)
                      +....+.....+.+.|+++.+   +.+....+.+.+...+...++.+..+++.||+++|+         ...++..+.++
T Consensus       226 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~---------~l~~~~~l~~l  296 (396)
T TIGR00882       226 GVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN---------ALLIAGTIMSV  296 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------hHHHHHHHHHH
Confidence            666666667778888888754   445566788888888888999999999999999883         22333333333


Q ss_pred             HHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHH-HHHHHhHHHHHHHHHHhhhccccchhHH
Q 009757          412 ALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGI-SNTAGTFAAILGTVGAGFFVELVGSFQG  489 (526)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~-~~~~~~lg~~~~~~~~g~l~~~~g~~~~  489 (526)
                      ........++.+......++..............+..+..+ +.+++..+. .+....+|+.+++.+.|++.|..| +..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~  375 (396)
T TIGR00882       297 RIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQG  375 (396)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHH
Confidence            33333334455544333332222222222222333444444 566776665 678889999999999999999987 888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 009757          490 FLLLTSLLYFLSALFYI  506 (526)
Q Consensus       490 ~~~~~~~~~~~~~~~~~  506 (526)
                      .|.+.+++.++..++..
T Consensus       376 ~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       376 AYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            98888887776665543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.1e-30  Score=234.91  Aligned_cols=345  Identities=20%  Similarity=0.171  Sum_probs=272.0

Q ss_pred             cCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhh
Q 009757          129 HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALP  208 (526)
Q Consensus       129 ~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~  208 (526)
                      .+-+++++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|++++..+++++++.  ++++.+++.|.+||+|.+...+
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg--~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG--NSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc--chhHHHHHHHHHhhhhHHHHHh
Confidence            44567889999999999999999999999999999999999999999999999999  9999999999999999999999


Q ss_pred             hhHHHHhhhcCcc-hhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 009757          209 AMNNMVARWFPQT-ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQIS  287 (526)
Q Consensus       209 ~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (526)
                      +..++++|.+|++ +|++++|+.-.+.++|.++||++||.+++..|.+.+|++.+++.++-.++.++..+....+.+   
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~---  255 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD---  255 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc---
Confidence            9999999999866 579999999999999999999999999999999999999999999888887777654322211   


Q ss_pred             hhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhh
Q 009757          288 KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA  367 (526)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~  367 (526)
                                            ......++++++++|.++.........+.........++.+..|.+..+.-+.|+...
T Consensus       256 ----------------------~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fL  313 (464)
T KOG3764|consen  256 ----------------------STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFL  313 (464)
T ss_pred             ----------------------ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeec
Confidence                                  1222346779999999998877777777777777788889888888855558999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHH-HHHHHHhhhhh---hH
Q 009757          368 VPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLT-LAIGMKSFSHS---GF  443 (526)
Q Consensus       368 ~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~  443 (526)
                      ...+...++..+.|.+.||++..       |......+++..+.........++....++-.+ ++.+.......   ..
T Consensus       314 p~~~~y~ig~~lfg~la~k~~~~-------~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l  386 (464)
T KOG3764|consen  314 PASLSYAIGTNLFGKLADKYPHL-------RWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTL  386 (464)
T ss_pred             ccccchhccCchHHHHHHhcCch-------hHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999955       235556666666665555555554433222221 22222212111   12


Q ss_pred             HHHHHhhccc---chhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          444 LVNLQEIAPQ---YSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       444 ~~~~~~~~~~---~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      ...+.....+   ..|..+++......+|.++||.++|.+.+..| +.+.....++..++-.-++..+
T Consensus       387 ~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG-F~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  387 GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG-FEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh-HHHHHHHHHHHHHHHHHHHHHH
Confidence            2222211122   57899999999999999999999999999998 8877777777666555444444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.97  E-value=2.9e-28  Score=240.47  Aligned_cols=370  Identities=13%  Similarity=0.021  Sum_probs=251.2

Q ss_pred             HHHHHHHHhhhhhhh-hcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcC-hHHHHHHHHHHHHHHhhh
Q 009757          104 LALALALCNADRVVM-SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMAWGVALWSLATFLT  181 (526)
Q Consensus       104 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l~~~~~~~~~~~~~~  181 (526)
                      +++.+++.+.....+ ++..+.+.+++|++..++|++.+++.++..++++++|+++||+|+ |+++.++.++.+++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            345556666666666 444555667799999999999999999999999999999999965 778888888888888888


Q ss_pred             hhccccchHHHHHHHHHhhhhccchhhhhHHHHhhh--------cCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC
Q 009757          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARW--------FPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (526)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g  253 (526)
                      .+.  ++++.+++.|++.|++.+...+...++...+        .....|.+..|      .+|.++|+.+++.+....+
T Consensus        87 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~  158 (418)
T TIGR00889        87 AQV--TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS  158 (418)
T ss_pred             HHh--cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch
Confidence            888  8999999999999998887777766654322        22223444444      4788899998887733323


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHH
Q 009757          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN  333 (526)
Q Consensus       254 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (526)
                      |+ +|++.++..++..+. .+..||.|+..++.+.+                   .++....+.++++|+|+++.+.+..
T Consensus       159 ~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~-------------------~~~~~~~~~~~~~k~~~~~~~~~~~  217 (418)
T TIGR00889       159 NI-QLYITAGSSALLGVF-ALTLPDIPVAKSTAKMS-------------------IKVMLGLDAFILFKNKRMAIFFFFS  217 (418)
T ss_pred             hH-HHHHHHHHHHHHHHH-HhcCCCCCCCccccccC-------------------HHHHhhhhHHHHhcCCCeeeHHHHH
Confidence            44 466666655555544 34455554321110000                   0000111345688999988887777


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhcCCc--------chhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHH
Q 009757          334 AMHSWGFFVILSWMPIYFNFVYHIDL--------RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG  405 (526)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~s~--------~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  405 (526)
                      ++..........+.+.|+++ .|.++        ...+...+...+..+++.+..+++.||+++|         ..+..+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r---------~~l~~~  287 (418)
T TIGR00889       218 MLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK---------KVMLLS  287 (418)
T ss_pred             HHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHH
Confidence            77766666677888888877 56554        4568888888899999999999999999988         333444


Q ss_pred             HHHHHHHHHhhcc-Cch---hHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHH-HHHhHHHHHHHHHHhh
Q 009757          406 FIAPGIALIGLTA-AKS---PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISN-TAGTFAAILGTVGAGF  479 (526)
Q Consensus       406 ~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~-~~~~lg~~~~~~~~g~  479 (526)
                      .++.++....+.. ...   .+..+...++.....+...+....++.+..| ++|++++|+.+ ....+|.++||.+.|+
T Consensus       288 ~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~  367 (418)
T TIGR00889       288 LVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGV  367 (418)
T ss_pred             HHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4444443333222 111   1222222222222233444555566666666 79999999997 5678999999999999


Q ss_pred             hccccch-----hHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009757          480 FVELVGS-----FQGFLLLTSLLYFLSALFYIIFSTGE  512 (526)
Q Consensus       480 l~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (526)
                      +.|+.|+     |+..|.+.+++.+++.+++.++.+++
T Consensus       368 l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       368 MVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9998653     78888888777777666665554443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.97  E-value=6.3e-29  Score=276.64  Aligned_cols=370  Identities=15%  Similarity=0.060  Sum_probs=251.7

Q ss_pred             HHHHHHHHhhhhhhhhcch-hhhhhhcCCcc-chhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHH---HHHHHHHHH
Q 009757          104 LALALALCNADRVVMSVAI-VPLSLAHGWSR-SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW---GVALWSLAT  178 (526)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~---~~~~~~~~~  178 (526)
                      .++..+.+.+....+.... ..+..+.+.+. ...++..+++.+++.++++++|+++||+|||+++..   +.++..+..
T Consensus        20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~   99 (1140)
T PRK06814         20 QFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALA   99 (1140)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence            3444444444443333332 23444444333 457888999999999999999999999999997643   222222223


Q ss_pred             hhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHH
Q 009757          179 FLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (526)
Q Consensus       179 ~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f  258 (526)
                      +.....  ++++.++++|+++|++.+...|+..+++.+++|+++|++++++.+++.++|.++||++++++....+|++.|
T Consensus       100 ~~~~~~--~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~  177 (1140)
T PRK06814        100 IYGFHL--NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV  177 (1140)
T ss_pred             HHHHHH--hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            333344  789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHH
Q 009757          259 VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSW  338 (526)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (526)
                      +..++..++..++ .+..++.+........+.                 .........++.+.++|.++...+..++.++
T Consensus       178 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (1140)
T PRK06814        178 ALLMGIAVLGWLA-SLFIPKTGNAAPDLKIDR-----------------NIIRSTITLLKYAKADKRIWLAILGISWFWL  239 (1140)
T ss_pred             HHHHHHHHHHHHH-HhhCCCCCCCCCCCeecc-----------------chHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            5554444444333 333444332211100000                 0000112356788899999999888888888


Q ss_pred             HHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhh--
Q 009757          339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL--  416 (526)
Q Consensus       339 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  416 (526)
                      ....+..++|.|+++.+|.+....+++.+...++.++|.++.|++.++..+++..      ....+...+..+.+...  
T Consensus       240 ~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~  313 (1140)
T PRK06814        240 VGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYV------PIGALLMGLFGLDLAFASS  313 (1140)
T ss_pred             HHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeee------hHHHHHHHHHHHHHHhccc
Confidence            8888889999999998999999999999999999999999999998876655211      11111111111111110  


Q ss_pred             ---------------ccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhh
Q 009757          417 ---------------TAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFF  480 (526)
Q Consensus       417 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l  480 (526)
                                     ....+.+...+..++.+.+.+...+...+..++..| +.+|+++|+.+++..++..+++.+.|.+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l  393 (1140)
T PRK06814        314 SVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL  393 (1140)
T ss_pred             ccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence                           011333333333333333334444445556565555 7999999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHHH
Q 009757          481 VELVGSFQGFLLLTSLLYF  499 (526)
Q Consensus       481 ~~~~g~~~~~~~~~~~~~~  499 (526)
                      .+...++...+++.+++.+
T Consensus       394 ~~~~~~~~~~~~~~~~~~~  412 (1140)
T PRK06814        394 QALGFSIPWIILFIALANL  412 (1140)
T ss_pred             HHhccCHHHHHHHHHHHHH
Confidence            8654446666555444433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.97  E-value=5.1e-29  Score=255.71  Aligned_cols=289  Identities=16%  Similarity=0.182  Sum_probs=226.4

Q ss_pred             HHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhh
Q 009757          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (526)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~  181 (526)
                      +..++..+.........+..++.+.++|+++..+.|++.+.+.++++++.++.|++.||+|||+.+.++.++++++++++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            44455667777777888999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhcc-------------------------------------------------ccchHHHHHHHHHhhhhccchhhhhHH
Q 009757          182 PWAA-------------------------------------------------DTSLLALLAMRAVVGLAEGVALPAMNN  212 (526)
Q Consensus       182 ~~~~-------------------------------------------------~~~~~~l~~~r~l~Gig~g~~~~~~~~  212 (526)
                      ++..                                                 ...+..++++|+++|+|.+..++...+
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            7751                                                 002566789999999999999999999


Q ss_pred             HHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc----------------------CchhHHHHHHHHHHHHHH
Q 009757          213 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA----------------------GIFGPFVIFGLSGFLWVL  270 (526)
Q Consensus       213 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~----------------------gw~~~f~~~~~~~~~~~~  270 (526)
                      ++.|++|+++|+++++++..+..+|.++|+++++++.+.+                      +|+..|++.+++.++..+
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v  275 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI  275 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987643                      267778888888777666


Q ss_pred             HHHhhccCCCCCCCCCChhHHHHHH-HhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHH
Q 009757          271 VWLSATSSTPDRHPQISKYELEYIL-REKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPI  349 (526)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (526)
                      .++++.++.|+...+.+.++.+... ................+....++.+++||.++...+..++.....+++.+|+|.
T Consensus       276 ~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~  355 (633)
T TIGR00805       276 PFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPK  355 (633)
T ss_pred             HHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555544444322111100000000 000000000000001112345678999999999999999999999999999999


Q ss_pred             HHHHHhcCCcchhhhHhhHhHH-HHHHHHHHHHHHHHHHHhh
Q 009757          350 YFNFVYHIDLRQASWFSAVPWS-VMAFTGYLGGLLSDMLIQR  390 (526)
Q Consensus       350 ~~~~~~g~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~~~~  390 (526)
                      |+++.+|+++.+++++.....+ +.+++.+++|++.||++.+
T Consensus       356 yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       356 YLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            9999999999999999887776 5688999999999999855

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.97  E-value=1.1e-27  Score=267.87  Aligned_cols=356  Identities=18%  Similarity=0.139  Sum_probs=248.3

Q ss_pred             hhhhcchhhhhhhcCCcc--chhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhh---hhccccchH
Q 009757          116 VVMSVAIVPLSLAHGWSR--SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLL  190 (526)
Q Consensus       116 ~~~~~~~~~l~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~  190 (526)
                      .....+.+.+..+++.+.  ...+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.   ...  ++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~--~~~~  104 (1146)
T PRK08633         27 GHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL--GWFW  104 (1146)
T ss_pred             HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH--ccHH
Confidence            344455566666666654  447999999999999999999999999999999999887766555443   334  6799


Q ss_pred             HHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhh--------c-CchhHHHHH
Q 009757          191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--------A-GIFGPFVIF  261 (526)
Q Consensus       191 ~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~--------~-gw~~~f~~~  261 (526)
                      .++++|+++|++.+...++..+++.|++|+++|++++++...+.++|.++|+++++++.+.        + +|++.+.+.
T Consensus       105 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  184 (1146)
T PRK08633        105 LAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLV  184 (1146)
T ss_pred             HHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999876        2 344444444


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHH
Q 009757          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (526)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (526)
                      ++...+..++..+..|+.++......+.               ............++.+++++.++...+..++......
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  249 (1146)
T PRK08633        185 LLAVAVLGLIFAYRLPKVPAAAPEVFDK---------------KKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQ  249 (1146)
T ss_pred             HHHHHHHHHHHHhcCcCCCCCCcccccc---------------cccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            4333333333334445544332211000               0000011122356678888988888777777777777


Q ss_pred             HHHHhHHHHHHHHhcCCcc-hhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCc
Q 009757          342 VILSWMPIYFNFVYHIDLR-QASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK  420 (526)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~-~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (526)
                      .+..++|.|+++.+|++.. ..+++.+...++.+++.++.+++.||+++++         ...++.++.++.++.+....
T Consensus       250 ~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~---------~~~~~~~~~~~~~~~~~~~~  320 (1146)
T PRK08633        250 LAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG---------LVPLGALGLALSLFLLPTAP  320 (1146)
T ss_pred             HHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc---------chhHHHHHHHHHHHHHHHhh
Confidence            7888999999998999998 8999999999999999999999999988762         22223333333333333333


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHH
Q 009757          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL  497 (526)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~  497 (526)
                      +.+..++..++.+...+...+....+..+..| +.||+++|+.+++..++.++++.+.+.+......+...+++.+.+
T Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        321 SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            44443333333333333444455566666655 799999999999999999888877766644211233444444443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.97  E-value=1e-27  Score=232.97  Aligned_cols=320  Identities=13%  Similarity=0.092  Sum_probs=232.7

Q ss_pred             hhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHh-----cChHH-HHHHHHHHHHHHhhhhhcc-ccc
Q 009757          116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-----GGKII-MAWGVALWSLATFLTPWAA-DTS  188 (526)
Q Consensus       116 ~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~~-~~~  188 (526)
                      ...++..|.+.+|+|+|.+++|++.+. .+...+ .+++|+++||+     ||||. ++.+.++.+++..+.++.. ..+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            456778899999999999999999766 555555 99999999998     89886 5677777777766666652 135


Q ss_pred             hHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC--------chhHHHH
Q 009757          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG--------IFGPFVI  260 (526)
Q Consensus       189 ~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g--------w~~~f~~  260 (526)
                      ++.+....++.+++.+...++..+++.|++|+|+|+++.++...+.++|.++++.+++.+.+..+        ||..|++
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            66677788888999899899999999999999999999999999999999999999999988888        9999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCch---HHHHHHHHHHHH
Q 009757          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP---TWSIIVANAMHS  337 (526)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  337 (526)
                      .++..++..+..++..||+++..+. ++++.                   .+..+.+++++++|.   ++...+..++..
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQEDASV-PKPLT-------------------QAVLKPIREFFQRKNMIQALLLLLLIVLYK  222 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCccccc-chhHH-------------------HHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            9887777665555555553321111 00000                   001235567777775   676777777777


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhH-HHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHh-
Q 009757          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW-SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG-  415 (526)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  415 (526)
                      ...+....+.|.|+++ +|++..+.+.+....+ +..+++.++++++.||+++|+       ...  .+.++.++.... 
T Consensus       223 ~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-------~l~--~~~~~~~~~~~~~  292 (356)
T TIGR00901       223 LGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY-------ALL--LFGIVQALTNAGF  292 (356)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHH--HHHHHHHHHHHHH
Confidence            8888888999999998 8999999998887666 567899999999999999872       222  222222222221 


Q ss_pred             -hc--cC-------chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHh
Q 009757          416 -LT--AA-------KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGT  467 (526)
Q Consensus       416 -~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~  467 (526)
                       +.  ..       +..+......++.....+...+....+..+..| +++|+.+|+.++..+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       293 VWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence             11  11       223334434444444445566666777777766 799999999888764

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.97  E-value=1.9e-26  Score=230.63  Aligned_cols=402  Identities=13%  Similarity=0.092  Sum_probs=267.7

Q ss_pred             HHHHHHHHHHhhhhhhhhcchhhhh-hh--cCCccchhhHHHHHHHHHHHHhhhhhhHHHhH-hcChHHHHHHHHHHHHH
Q 009757          102 SMLALALALCNADRVVMSVAIVPLS-LA--HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLA  177 (526)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~--~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~  177 (526)
                      ..+.+..+...+..+...+.+|.+. ++  +|.+..+.|++.+.+.++..++++++|+++|| +|||++++++.++.+++
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g   92 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLG   92 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            3344455555555555666666654 44  89999999999999999999999999999999 89999999999999999


Q ss_pred             HhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcch---hhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCc
Q 009757          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE---RARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (526)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw  254 (526)
                      .++.+++  ++++.+++.|++.|+|.|...+...++++|++|+++   |+++++++..+.++|.++||.+++++.++.||
T Consensus        93 ~~~~~~~--~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~  170 (475)
T TIGR00924        93 HFMLAMS--IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGY  170 (475)
T ss_pred             HHHHHhc--ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            9999988  888899999999999999999999999999998654   88899999999999999999999999998999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcc---CCCCCCCCCChhHHHHHHHhc----------ccccccCCCCC------------
Q 009757          255 FGPFVIFGLSGFLWVLVWLSATS---STPDRHPQISKYELEYILREK----------QKPLLMGNKHK------------  309 (526)
Q Consensus       255 ~~~f~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~------------  309 (526)
                      ++.|++.++..++..+..+...+   +.|++.+..++++.+......          .......+...            
T Consensus       171 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (475)
T TIGR00924       171 HVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAV  250 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99999988655554433333222   112111111111111000000          00000000000            


Q ss_pred             -------CCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcch----hhhHhhHhHHHHHHHHH
Q 009757          310 -------PATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ----ASWFSAVPWSVMAFTGY  378 (526)
Q Consensus       310 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~~~~~~~~~i~~~  378 (526)
                             ..++.....+..|...+..+.+...+....+....+.++.+.++..+.+...    .+++.++..+..++..+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p  330 (475)
T TIGR00924       251 IIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSP  330 (475)
T ss_pred             HHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHH
Confidence                   0000001011112223445555566666777777777888887754443222    66788888888888877


Q ss_pred             HHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc---------cCchhHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 009757          379 LGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT---------AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQE  449 (526)
Q Consensus       379 ~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (526)
                      +..++..|..+|+.......+  +.+++++.++++....         ...+.++.+...++.........+.......+
T Consensus       331 ~~~~~~~~l~~~~~~~~~~~k--~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~  408 (475)
T TIGR00924       331 VLAMIWTRLGRKGKDPTTPLK--FTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTK  408 (475)
T ss_pred             HHHHHHHHHHhCCCCCCcHHH--HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            777776777765332222222  2334444333333322         12345555555555555566667777777777


Q ss_pred             hcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          450 IAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       450 ~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      ..| +.||+++|+......+|..+++.+.+...+..| +...|...++..++..++.+..
T Consensus       409 ~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  467 (475)
T TIGR00924       409 IAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQG-VTGVFGKIGLVTLLVGVVMALM  467 (475)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHHHHH
Confidence            766 699999999999999999999999887777655 6666766666666555554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=3.7e-27  Score=227.29  Aligned_cols=405  Identities=16%  Similarity=0.103  Sum_probs=275.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhcchhhhh--------hhcC--Cccch----hhHHHHHHHHHHHHhhhhhhHHHhHhcCh
Q 009757           99 KVVSMLALALALCNADRVVMSVAIVPLS--------LAHG--WSRSF----SGIVQSSFLWGYLVSPIAGGTLVDYYGGK  164 (526)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~--~s~~~----~g~~~s~~~~~~~~~~~~~G~l~dr~Grr  164 (526)
                      .......++.+-.++....+++..+.+.        +.+|  .++.+    .+.+.+++.+|.++|++..|.++||+|||
T Consensus        11 ~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK   90 (485)
T KOG0569|consen   11 LAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRK   90 (485)
T ss_pred             HHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            3334444444555555555555544333        3455  34333    47778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhcc-ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHH
Q 009757          165 IIMAWGVALWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLV  243 (526)
Q Consensus       165 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~  243 (526)
                      ..+.++.++..++.++..++. .+++.+++++|++.|+..|.......-++.|..|++.||....+...+..+|.+++..
T Consensus        91 ~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~  170 (485)
T KOG0569|consen   91 NALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQV  170 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHH
Confidence            999999888888877655542 2788999999999999999999999999999999999999999999999999999977


Q ss_pred             HHHH--HHhhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCC--CCChhHHHHHHHhc--ccc---------cccCCCC
Q 009757          244 LSPI--LMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP--QISKYELEYILREK--QKP---------LLMGNKH  308 (526)
Q Consensus       244 l~~~--l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~---------~~~~~~~  308 (526)
                      ++.-  +-+...|++.+.+..+++++..+. +.+.||+|+..-  +.+++|.++..+..  .++         .+.++++
T Consensus       171 ~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~-l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~  249 (485)
T KOG0569|consen  171 LGLPSLLGTEDLWPYLLAFPLIPALLQLAL-LPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEE  249 (485)
T ss_pred             HccHHhcCCCcchHHHHHHHHHHHHHHHHH-HhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhc
Confidence            7632  334456999998888877766554 455688887421  22233322222211  110         0011111


Q ss_pred             CCCCCCchHHHHHcCchHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHH
Q 009757          309 KPATVIPPFRRLLSKMPTWSI-----IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLL  383 (526)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l  383 (526)
                      ..+....+++++++++....-     .+.......+.+.+..|...++++ .|++..++.+.....+....+.++++.++
T Consensus       250 ~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~l  328 (485)
T KOG0569|consen  250 LEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFL  328 (485)
T ss_pred             cccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222355678889988664442     222333334556667777777777 69999999999999999999999999999


Q ss_pred             HHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc----c-Cch-hHH---HHHHHHHHHHHHhhh-hhhHHHHHHhhcc-
Q 009757          384 SDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT----A-AKS-PVM---ASAWLTLAIGMKSFS-HSGFLVNLQEIAP-  452 (526)
Q Consensus       384 ~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~-~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-  452 (526)
                      .||+|||         .++..+..++.+..+.+.    . ... .|.   .+++.++.......+ .+..+.+.+|+.| 
T Consensus       329 id~~gRR---------pLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~  399 (485)
T KOG0569|consen  329 IDRLGRR---------PLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQ  399 (485)
T ss_pred             HHhcCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCc
Confidence            9999999         333333333332222211    1 111 222   233333334444444 4566788888888 


Q ss_pred             cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHH-HHHHHHHHHHHhcCceecc
Q 009757          453 QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL-YFLSALFYIIFSTGERVNF  516 (526)
Q Consensus       453 ~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  516 (526)
                      +.|+.++++...+..+..++-...+..+.+..|.  ..|+...+. .+..+.++..++++|.+..
T Consensus       400 ~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i~~~~~lPETkgr~~  462 (485)
T KOG0569|consen  400 SARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLIYLYRYLPETKGRTP  462 (485)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence            6999999999999999999999999999999985  344444444 4444444555566665543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.96  E-value=2.6e-26  Score=225.81  Aligned_cols=371  Identities=12%  Similarity=0.062  Sum_probs=262.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHH--HHHHHHHHHHhhhhhh-HHHhHhcChHHHHHHHHHH-HH
Q 009757          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIV--QSSFLWGYLVSPIAGG-TLVDYYGGKIIMAWGVALW-SL  176 (526)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~--~s~~~~~~~~~~~~~G-~l~dr~Grr~~l~~~~~~~-~~  176 (526)
                      +..+...++.++...+...+.+|.+.++.|.|.+++|++  .++..+...+.+++++ +..||+||||..++...+. ++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            556777888899988999999999999999999999997  4667888888888884 4799999999875555332 21


Q ss_pred             HHhhhh-hccccc-hHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCc
Q 009757          177 ATFLTP-WAADTS-LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (526)
Q Consensus       177 ~~~~~~-~~~~~~-~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw  254 (526)
                      .....+ +....+ ...++...++.++..+...+...++..|..++++++...+....+..+|.++|+.+.+++.+++||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw  162 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ  162 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            222222 211122 334445556666777888888999999999888889999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHH
Q 009757          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (526)
Q Consensus       255 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (526)
                      |..|++.+++.++..+..++..|+++++.+.                        ++....++++.+|+|.++......+
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~  218 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAVASPEA------------------------PLARRASLFRFFRRPLAWSLLALAL  218 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCcccc------------------------chhhHHHHHHHHcCcCHHHHHHHHH
Confidence            9999999988877666655554443211100                        0011235678899999888888888


Q ss_pred             HHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHH-HHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHH-HHHHH
Q 009757          335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWS-VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI-APGIA  412 (526)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~-~~~~~  412 (526)
                      +..........+.+.|++| .|+++++.+.+....++ ...++.++.|++.||+++++       ......... .....
T Consensus       219 l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-------~l~~~~~~~~~~~~~  290 (390)
T TIGR02718       219 LSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR-------TFILGVGLAGSLALL  290 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHH
Confidence            8888788888899999998 69999999999887764 56677899999999999882       222111111 11111


Q ss_pred             HHhhc---cCchhHHHHHHHHHHHHHHhhhhhhHHHH-HHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchh
Q 009757          413 LIGLT---AAKSPVMASAWLTLAIGMKSFSHSGFLVN-LQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSF  487 (526)
Q Consensus       413 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~  487 (526)
                      .+...   .............+.....+...+..... .....+ +.+++.+++.+...++|..++|.+.|.+.|..| +
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~  369 (390)
T TIGR02718       291 WFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-Y  369 (390)
T ss_pred             HHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c
Confidence            11111   11222222222223222333443444333 445555 689999999999999999999999999999987 8


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 009757          488 QGFLLLTSLLYFLSALF  504 (526)
Q Consensus       488 ~~~~~~~~~~~~~~~~~  504 (526)
                      ...|...+++.+++.+.
T Consensus       370 ~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       370 AGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888877766665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.96  E-value=1.1e-26  Score=220.34  Aligned_cols=380  Identities=12%  Similarity=0.069  Sum_probs=262.4

Q ss_pred             hhhhhhhcchhhhhhhcCCccch-hhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHH
Q 009757          113 ADRVVMSVAIVPLSLAHGWSRSF-SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLA  191 (526)
Q Consensus       113 ~~~~~~~~~~~~l~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (526)
                      -.+...+.+.|.+.+++|+|+.+ .|.+.++++.+++++.++.|+++||+|.|+++.++.+.+++.+++.+++  ++++.
T Consensus        40 e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--~Sl~~  117 (511)
T TIGR00806        40 QFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--TSVWH  117 (511)
T ss_pred             HhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            34677888899999999999999 9999999999999999999999999999999999999999999999999  99999


Q ss_pred             HHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHH--HHHHHHHH
Q 009757          192 LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF--GLSGFLWV  269 (526)
Q Consensus       192 l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~--~~~~~~~~  269 (526)
                      +.+.|++.|++.|... +...++..|+|+++|+++.++..++..+|.+++++++++ +..+|||..+.+.  ...+....
T Consensus       118 L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a  195 (511)
T TIGR00806       118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFS  195 (511)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHH
Confidence            9999999999999999 999999999999999999999999999999999999999 5568999865443  22223333


Q ss_pred             HHHHhhccCCCCCCCCCChhHHH-HHHHhcccccccCC--CC--CC-------CCCCchHHHHHcCchHHHHHHHHHHHH
Q 009757          270 LVWLSATSSTPDRHPQISKYELE-YILREKQKPLLMGN--KH--KP-------ATVIPPFRRLLSKMPTWSIIVANAMHS  337 (526)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (526)
                      +++-+++|..++..-...+++.+ ....+.+.....+.  ..  .+       ...+..++...+||.++...+-+.+..
T Consensus       196 ~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~  275 (511)
T TIGR00806       196 VFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNS  275 (511)
T ss_pred             HHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHh
Confidence            33444455433311000000000 00000000000000  00  00       011234455678888888888888888


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc
Q 009757          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (526)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (526)
                      .+++.+.+|....-++..+-....-|..-++..+.+.+..+..|++-.++.+.       ....+.+..++.+..++++.
T Consensus       276 ~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-------~~l~l~v~s~~~~gll~~m~  348 (511)
T TIGR00806       276 AGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW-------SKLLIAVVSAIQAGLVFWMS  348 (511)
T ss_pred             hHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-------HHHHHHHHHHHHHHHhhhhh
Confidence            88899989888888775332223567777777888888888888885544332       22445555556666677777


Q ss_pred             cCchhHHHHHHHHHHHHHHhhhhhhH-HHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHH----hhhcc---ccchhHH
Q 009757          418 AAKSPVMASAWLTLAIGMKSFSHSGF-LVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGA----GFFVE---LVGSFQG  489 (526)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~----g~l~~---~~g~~~~  489 (526)
                      ..++.|...+..++..+...+..++. ..+...+..+..|-.+|+.+++..+-..+-..+.    |.-.+   .+--|..
T Consensus       349 ~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVvd~~gl~l~i~~Qf~vY~~  428 (511)
T TIGR00806       349 QSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVVSDKRGLGLQVRKQFRIYSV  428 (511)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEEcccccCCCceeEEEehhh
Confidence            78888888777766655555554444 3444445556779999998887766655544432    22111   1112455


Q ss_pred             HHHHHHHHHHHHHH
Q 009757          490 FLLLTSLLYFLSAL  503 (526)
Q Consensus       490 ~~~~~~~~~~~~~~  503 (526)
                      .|.+.+++.++..+
T Consensus       429 yf~~~~~i~~~~~~  442 (511)
T TIGR00806       429 YFLVLSIICFFGAG  442 (511)
T ss_pred             HHHHHHHHHHHHHH
Confidence            56555555554444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=2.5e-27  Score=212.16  Aligned_cols=401  Identities=15%  Similarity=0.101  Sum_probs=285.5

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHH
Q 009757           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (526)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (526)
                      ..+.+|..............+.....+.+.|.+.+.+|.+..|..++......+..+++..+|.++|++|||+.+.+..+
T Consensus        72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l  151 (528)
T KOG0253|consen   72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL  151 (528)
T ss_pred             cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence            34567888888888888888877777888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc
Q 009757          173 LWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (526)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~  252 (526)
                      ...+...+.+.+  +|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.++...++..++.++
T Consensus       152 ~t~v~~~is~~s--pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~  227 (528)
T KOG0253|consen  152 VTGVFGVISGAS--PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF  227 (528)
T ss_pred             HHHHHHHhhcCC--CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999  9999999999999999999 999999999999999988777666 899999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhH-----HHHHHHhcccc--------------------cccCCC
Q 009757          253 GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYE-----LEYILREKQKP--------------------LLMGNK  307 (526)
Q Consensus       253 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--------------------~~~~~~  307 (526)
                      ||||..........+.+ ...+..+|+|+-.-...+++     .+++.+...+.                    ....+.
T Consensus       228 gwr~~l~~~~~pl~~~a-~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~  306 (528)
T KOG0253|consen  228 GWRYLLFTSSTPLMFAA-RFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKS  306 (528)
T ss_pred             hHHHHHHHHHhHHHHHH-HHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhh
Confidence            99998888775554444 44556677776332221111     11222111111                    000011


Q ss_pred             CCCCCCCchHHHHHc---CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh--c-----------------CCcchhhhH
Q 009757          308 HKPATVIPPFRRLLS---KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY--H-----------------IDLRQASWF  365 (526)
Q Consensus       308 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g-----------------~s~~~~~~~  365 (526)
                      +..++...+...++.   ++..+.+...++...+.+++.........+...  +                 .+...--.=
T Consensus       307 ~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd  386 (528)
T KOG0253|consen  307 SAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD  386 (528)
T ss_pred             ccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH
Confidence            112223333444432   133344455555556666665544444444311  1                 111111112


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHH
Q 009757          366 SAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV  445 (526)
Q Consensus       366 ~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (526)
                      ..+..+....|.++.+++.||+|||         ..+...++..+++++.+...........+.+.+-.+........+.
T Consensus       387 llitslaefPGlLIt~~iverlGRK---------kTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYv  457 (528)
T KOG0253|consen  387 LLITSLAEFPGLLITGVIVERLGRK---------KTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYV  457 (528)
T ss_pred             HHHHHHhhCCchhHHHHHHHHhcch---------hHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEE
Confidence            3345677888999999999999999         4556666777777766665555555555666666666677788899


Q ss_pred             HHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 009757          446 NLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST  510 (526)
Q Consensus       446 ~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  510 (526)
                      +..|++| ..|+++.|.+..+..+|+++.|.+. ...+..  ...+..+.+.+++++.++..+++.
T Consensus       458 YtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s--~sl~i~vy~~~~ilagIavcffPi  520 (528)
T KOG0253|consen  458 YTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELS--TSLPIFVYGALFILAGIAVCFFPI  520 (528)
T ss_pred             ecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccc--eeehHHHHHHHHHHHHHHheeeee
Confidence            9999999 5999999999999999999999988 444442  233444445555556555555543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.96  E-value=6.3e-26  Score=226.80  Aligned_cols=398  Identities=12%  Similarity=0.080  Sum_probs=248.6

Q ss_pred             HHHHHHHHHHHhhhhhhh-hcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhH-hcChHHHHHHHHHHHHHH
Q 009757          101 VSMLALALALCNADRVVM-SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLAT  178 (526)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~  178 (526)
                      +..+++..+...+..+.. .....++.+++|.+..+.+++.+.+.....+..+++|+++|| +||||+++++.++++++.
T Consensus        16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~   95 (489)
T PRK10207         16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGY   95 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHH
Confidence            444444444454444444 344556678899999999999999998999999999999999 999999999999999999


Q ss_pred             hhhhhccccchHH-HHHHHHHhhhhccchhhhhHHHHhhhcCcc--hhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCch
Q 009757          179 FLTPWAADTSLLA-LLAMRAVVGLAEGVALPAMNNMVARWFPQT--ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (526)
Q Consensus       179 ~~~~~~~~~~~~~-l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~  255 (526)
                      ++++++  .+... ++++|+++|+|.|...+...+++.|++|++  +|+++++++..+.++|..+||.+++++.+++|||
T Consensus        96 ~~~~~~--~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~  173 (489)
T PRK10207         96 FMTGMS--LLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYS  173 (489)
T ss_pred             HHHHHh--ccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence            999887  55444 558899999999999999999999999876  4578999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccCCCCC----CCCCChhHHHHH------------HHhcccc-cc---------------
Q 009757          256 GPFVIFGLSGFLWVLVWLSATSSTPDR----HPQISKYELEYI------------LREKQKP-LL---------------  303 (526)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~-~~---------------  303 (526)
                      +.|++.++..++. ++.+...++..++    .+....+.....            ....... ..               
T Consensus       174 ~~F~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  252 (489)
T PRK10207        174 VTYNLCGAGLIIA-LLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTII  252 (489)
T ss_pred             HHHHHHHHHHHHH-HHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            9999976543333 3333222221111    101001100000            0000000 00               


Q ss_pred             -cCCCCCCCCCCchHHHHHcCchHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHhcCCc----chhhhHhhHhHHHHHHH
Q 009757          304 -MGNKHKPATVIPPFRRLLSKMPTWSIIVA--NAMHSWGFFVILSWMPIYFNFVYHIDL----RQASWFSAVPWSVMAFT  376 (526)
Q Consensus       304 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~s~----~~~~~~~~~~~~~~~i~  376 (526)
                       ..++. +.      .+.+|+|.+....+.  ..+....+....+.++.+.++..+.+.    .....+.+...+..++.
T Consensus       253 f~~~~~-~~------~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~  325 (489)
T PRK10207        253 FFREAF-KL------DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVA  325 (489)
T ss_pred             HHHHHh-cC------CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHH
Confidence             00000 00      134555554433322  344445555565777778775333211    12234444455666678


Q ss_pred             HHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHH-----hhcc---CchhHHHHHHH-HHHHHHHhhhhhhHHHHH
Q 009757          377 GYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI-----GLTA---AKSPVMASAWL-TLAIGMKSFSHSGFLVNL  447 (526)
Q Consensus       377 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  447 (526)
                      .++.+++.||+++|+.......+......+...+...+     ....   ..+.++.+... +.+.+.....++......
T Consensus       326 ~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~  405 (489)
T PRK10207        326 SPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIA  405 (489)
T ss_pred             HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            88889999999988644333333333222222221111     1111   12234343333 344444444444445555


Q ss_pred             HhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhcc---------ccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          448 QEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVE---------LVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       448 ~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      ...+++.+|.++|+.+...++|+.++..+.+....         ..+.+...|...++..+++.++++..
T Consensus       406 ~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~  475 (489)
T PRK10207        406 ALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM  475 (489)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555899999999999999999999988865521         11125667777776666555555443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.96  E-value=2.9e-27  Score=236.72  Aligned_cols=335  Identities=16%  Similarity=0.124  Sum_probs=239.7

Q ss_pred             chhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhH----hcCh-HHHHHHHHHHHHHHhhhhhcccc----chHH
Q 009757          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGK-IIMAWGVALWSLATFLTPWAADT----SLLA  191 (526)
Q Consensus       121 ~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~~----~~~~  191 (526)
                      ..+.+.+++|+++.++|++.++..+..++..++.|+++||    +||| +.++++....+++.+++.+.+..    .++.
T Consensus        22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~  101 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY  101 (437)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            4566777899999999999999999999999999999998    6774 46778888888888777665211    1456


Q ss_pred             HHHHHHHhhhhccchhhhhHHHHhhhc-CcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh-------hcCchhHHHHHHH
Q 009757          192 LLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMS-------QAGIFGPFVIFGL  263 (526)
Q Consensus       192 l~~~r~l~Gig~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-------~~gw~~~f~~~~~  263 (526)
                      +++.+++.+++.+...+...++..|.. ++++|++..++...+..+|..+++.+.+.+..       ..+||+.+.+.++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~  181 (437)
T TIGR00792       102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL  181 (437)
T ss_pred             HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence            777888899998888888888888887 46899999999999999998888777665543       4579999999998


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 009757          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (526)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (526)
                      +.++..++.++..+|++++.+                    .+++++.+..+.+++++++|.++..++..++........
T Consensus       182 l~~~~~~~~~~~~~e~~~~~~--------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (437)
T TIGR00792       182 IGVVSLIICFFGTKERYSEIP--------------------KNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIK  241 (437)
T ss_pred             HHHHHHHHHHcCCEecCCCCC--------------------cccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            888777666666665542111                    000111123446778889999998888888877777776


Q ss_pred             HHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccC-chh
Q 009757          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA-KSP  422 (526)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  422 (526)
                      ..+.+.|.+..++ +....+.+.....++.+++.++.+++.||+++|+         ....+..+..+..+.+... ++.
T Consensus       242 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~  311 (437)
T TIGR00792       242 NGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI---------LFAGGILLMVLGYLIFFFAGSNL  311 (437)
T ss_pred             cchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH---------HHHHHHHHHHHHHHHHHHcchhH
Confidence            6666777766555 4556677777778889999999999999999882         2222333322222222221 233


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHhhc--------ccchhhHHHHHHHHHhHHHHHHHHHHhhhccccc
Q 009757          423 VMASAWLTLAIGMKSFSHSGFLVNLQEIA--------PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (526)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g  485 (526)
                      +......++.....+...+.......+..        ++.+|.+.|+.+.+..+|..+++.+.|.+.+..|
T Consensus       312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       312 PLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33333333333333334455555555543        3467999999999999999999999999998765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=8.1e-27  Score=236.47  Aligned_cols=408  Identities=17%  Similarity=0.113  Sum_probs=267.8

Q ss_pred             HHHHHHHHHHHHHHhhh--hhhhhcchhhhhhhcC-----Ccc--chhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHH
Q 009757           98 VKVVSMLALALALCNAD--RVVMSVAIVPLSLAHG-----WSR--SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA  168 (526)
Q Consensus        98 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~-----~s~--~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~  168 (526)
                      ........+..+..+.+  ....+++...+.++..     .+.  .+.+|+.+...++..+++++.|+++|++|||+.++
T Consensus        44 ~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~  123 (513)
T KOG0254|consen   44 ILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL  123 (513)
T ss_pred             HHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            33444444555555544  4455566666655321     122  34599999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 009757          169 WGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (526)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l  248 (526)
                      ++.+.+.++.++++++  +|+++++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..++...
T Consensus       124 ~~~~~~~iG~ii~~~a--~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~  201 (513)
T KOG0254|consen  124 LAVVLFLIGAIIIALA--PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT  201 (513)
T ss_pred             HHHHHHHHHHHHHHHh--hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999  99999999999999999999999999999999999999999999999999999996665555


Q ss_pred             Hhh-cCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCC-ChhHHHHHHHhccc--ccccC-----------CCCCCCCC
Q 009757          249 MSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQI-SKYELEYILREKQK--PLLMG-----------NKHKPATV  313 (526)
Q Consensus       249 ~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~-----------~~~~~~~~  313 (526)
                      .+. .+||..+.+..+.+++..+. .++.||+|+..-+. ..++.+........  ....+           .+......
T Consensus       202 ~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (513)
T KOG0254|consen  202 SKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEG  280 (513)
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccc
Confidence            332 48999999998888888777 77788888643221 22222222111111  00000           00000001


Q ss_pred             CchHHHHHc----CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHh
Q 009757          314 IPPFRRLLS----KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQ  389 (526)
Q Consensus       314 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~  389 (526)
                      ...++++++    ++.++...+..+.+..+......|.+.+++. .|.+... .....+.++...++.++..++.||+||
T Consensus       281 ~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gR  358 (513)
T KOG0254|consen  281 KASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGR  358 (513)
T ss_pred             cccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            112333332    2234445555566666667777888888877 5766443 555556677788888888999999999


Q ss_pred             hcCccchhHHHHHHHHHHHHHHHHHhhc-------c-----CchhHHHHHHHHHHH-HHHhhhhhhHHHHHHhhcc-cch
Q 009757          390 RGTSVTLTRKILQSIGFIAPGIALIGLT-------A-----AKSPVMASAWLTLAI-GMKSFSHSGFLVNLQEIAP-QYS  455 (526)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~  455 (526)
                      |         .++..+...+.++...+.       .     ....+..+...++.. .+.....+..+.+..|..| +.|
T Consensus       359 r---------~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r  429 (513)
T KOG0254|consen  359 R---------KLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLR  429 (513)
T ss_pred             H---------HHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHH
Confidence            9         333333333333333221       1     112233333333333 3333334555678889999 799


Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH-HHHHHHhcCceeccccc
Q 009757          456 GVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSA-LFYIIFSTGERVNFDEA  519 (526)
Q Consensus       456 g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  519 (526)
                      +++.++...++.+...+-......+.+..+.....+.+.+++.+... .+++.+++.+.+..++.
T Consensus       430 ~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei  494 (513)
T KOG0254|consen  430 SKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEI  494 (513)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHH
Confidence            99999999999988888777766666654312233333344444333 34555666666555443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.95  E-value=1.8e-26  Score=208.23  Aligned_cols=355  Identities=15%  Similarity=0.080  Sum_probs=236.8

Q ss_pred             cCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhh
Q 009757          129 HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALP  208 (526)
Q Consensus       129 ~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~  208 (526)
                      .+.+....|.+.+.+.++..+.++.+|.++||+|||++++++.+..++...+.+++  .|+..+++.|++.|+..|. ..
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S--~~F~afv~aR~l~Gi~kgn-l~  139 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS--RNFAAFVLARFLGGIFKGN-LS  139 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhccCc-hH
Confidence            34455677999999999999999999999999999999999999999999999999  9997777779999999887 66


Q ss_pred             hhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh---hcCchhHHHH----HHHHHHHHHHHHHhhccCCCC
Q 009757          209 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS---QAGIFGPFVI----FGLSGFLWVLVWLSATSSTPD  281 (526)
Q Consensus       209 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~---~~gw~~~f~~----~~~~~~~~~~~~~~~~~~~~~  281 (526)
                      ...++++|.+++|+|+++++.+...+++|.++||.+|+++..   ..| +.+|..    ..+....-.....++.||+-+
T Consensus       140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~  218 (451)
T KOG2615|consen  140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLP  218 (451)
T ss_pred             HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            789999999999999999999999999999999999999987   333 222222    112222212233344566533


Q ss_pred             CCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009757          282 RHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPT-------WSIIVANAMHSWGFFVILSWMPIYFNFV  354 (526)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (526)
                      .+++.  ++.....+....     +++..+..+..--..+||+..       ..+.+..+++...+..+..+.+.+..+.
T Consensus       219 ~rk~~--~~~~~~~~~~~~-----~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~r  291 (451)
T KOG2615|consen  219 LRKRN--DEHSTLQEAADD-----RLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGR  291 (451)
T ss_pred             chhhc--ccccchhhhhhh-----hhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCc
Confidence            32222  111000000000     000000000001123344322       2233444444455555555555555566


Q ss_pred             hcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q 009757          355 YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIG  434 (526)
Q Consensus       355 ~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (526)
                      +|+++.+.|-+.+..++.+.+.........+|....       .+......+..+.-.++.+.....+........+..+
T Consensus       292 fg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~-------~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf  364 (451)
T KOG2615|consen  292 FGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGN-------IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSF  364 (451)
T ss_pred             cCCChhhheeeeehhhHHHHHHHHhccccccccccc-------hhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence            899999999999988888877777666666665422       1133344444444444445555555555555555555


Q ss_pred             HHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHH
Q 009757          435 MKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLS  501 (526)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  501 (526)
                      ......+....++....| ++||+++|+..+.+.++.++||.+.|.+..+.-.-+..+...+.+.++.
T Consensus       365 ~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~  432 (451)
T KOG2615|consen  365 STASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIP  432 (451)
T ss_pred             HHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHH
Confidence            556666777778887777 6999999999999999999999999999987543444554444444444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=7.3e-28  Score=222.45  Aligned_cols=416  Identities=14%  Similarity=0.175  Sum_probs=293.5

Q ss_pred             ccccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhc-C-------CccchhhHHHHHHHHHHHHhhhhhhHHHhHhc
Q 009757           91 EFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAH-G-------WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG  162 (526)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-------~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G  162 (526)
                      +...+++.+.+.+..++.+.+.++...++...|.+...+ +       .++...+.+..+..+|.++|++++|++.||+|
T Consensus        33 ~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~G  112 (538)
T KOG0252|consen   33 EGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFG  112 (538)
T ss_pred             cchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            335667788899999999999999999999988877654 2       34566789999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHhhhhhccc-----cchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhH
Q 009757          163 GKIIMAWGVALWSLATFLTPWAAD-----TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSG  237 (526)
Q Consensus       163 rr~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G  237 (526)
                      ||+++...++++.++++++++...     .-.+++...|++.|+|.|+-+|.+.++.+|...+++||...+...+..+.|
T Consensus       113 RK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~G  192 (538)
T KOG0252|consen  113 RKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFG  192 (538)
T ss_pred             chhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchh
Confidence            999999999999999998877631     125678899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc---------------CchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhccccc
Q 009757          238 NAIGLVLSPILMSQA---------------GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPL  302 (526)
Q Consensus       238 ~~ig~~l~~~l~~~~---------------gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (526)
                      .+.|.+++-.+...+               =||..|.+.+++.++.... ....||+++-.. ...++.+....+..+..
T Consensus       193 ilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~-Rl~M~Et~~Y~a-l~~~~~~~a~~d~~k~~  270 (538)
T KOG0252|consen  193 ILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYF-RLKMPETARYTA-LVSKKLKQAAGDMKKVL  270 (538)
T ss_pred             HhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh-hhcCCcchhHHH-HhhcCHhhhhhcccccc
Confidence            888888776654311               2998888877776554433 334455543220 00000000001111100


Q ss_pred             c-----cCC-C---CCCCCCCchHHHHHcC---chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhh------
Q 009757          303 L-----MGN-K---HKPATVIPPFRRLLSK---MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW------  364 (526)
Q Consensus       303 ~-----~~~-~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~------  364 (526)
                      .     .+. +   +.++.....+...+..   ++++..+..+|+.-.+++....+...++++ .|+.+.....      
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~v  349 (538)
T KOG0252|consen  271 SVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKV  349 (538)
T ss_pred             ccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHH
Confidence            0     000 0   0111111112222222   456667788888888999988888888887 5765554433      


Q ss_pred             --HhhHhHHH-HHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCch----hHHHHHHHHHHHHHHh
Q 009757          365 --FSAVPWSV-MAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS----PVMASAWLTLAIGMKS  437 (526)
Q Consensus       365 --~~~~~~~~-~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  437 (526)
                        ...+...+ .+.|..+...++|++||+         .....++.++.+..+.+....+    .....++..+..++..
T Consensus       350 A~~~~iia~~~~vPGyw~tv~~id~iGRk---------~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~N  420 (538)
T KOG0252|consen  350 AEGNLIIAVCSTVPGYWFTVYFIDIIGRK---------YIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGN  420 (538)
T ss_pred             HHHHHHHHHHccCCceeEEEEEeehhhhH---------HHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHh
Confidence              11122222 233556677789999999         6667777777777766654433    1222333333344444


Q ss_pred             hhhh-hHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhcc-----ccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 009757          438 FSHS-GFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE-----LVGSFQGFLLLTSLLYFLSALFYIIFST  510 (526)
Q Consensus       438 ~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~  510 (526)
                      +++. ....+..|.+| +.|++..|+....+..|++++...+.++.+     ..| ....+++.+.+.+++.+..+++++
T Consensus       421 FGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pE  499 (538)
T KOG0252|consen  421 FGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPE  499 (538)
T ss_pred             cCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeec
Confidence            4443 44677789999 799999999999999999999999999999     666 889999999999999998888887


Q ss_pred             Cceeccccc
Q 009757          511 GERVNFDEA  519 (526)
Q Consensus       511 ~~~~~~~~~  519 (526)
                      .+++..++.
T Consensus       500 tk~~~leei  508 (538)
T KOG0252|consen  500 TKGKSLEEI  508 (538)
T ss_pred             ccccCHHHh
Confidence            766655444

>PTZ00207 hypothetical protein; Provisional

Probab=99.95  E-value=1.3e-24  Score=216.85  Aligned_cols=410  Identities=12%  Similarity=0.026  Sum_probs=283.1

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHH
Q 009757           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (526)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (526)
                      ...+||..+.......... ...+.++...+.+.+++|+|..+++++.++. .....++++.|++.||+|+|+++.++.+
T Consensus        22 ~e~~Rw~~lva~~~~~~~~-g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~l   99 (591)
T PTZ00207         22 NEPRRFALLVLGAFCSICT-SFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMT   99 (591)
T ss_pred             cccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            3455666665555444443 3445677888999999999999999998874 3455678889999999999999999999


Q ss_pred             HHHHHHhhhhhccc----cchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 009757          173 LWSLATFLTPWAAD----TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (526)
Q Consensus       173 ~~~~~~~~~~~~~~----~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l  248 (526)
                      +++++.++++++.+    ++++.+++.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|.++.+.+...+
T Consensus       100 l~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l  178 (591)
T PTZ00207        100 VFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF  178 (591)
T ss_pred             HHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888622    489999999999999999999999999999996 8899999999999999998655554444


Q ss_pred             HhhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCC-----CCChhHHHHHH--Hh----ccc-c---------------
Q 009757          249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-----QISKYELEYIL--RE----KQK-P---------------  301 (526)
Q Consensus       249 ~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~----~~~-~---------------  301 (526)
                      .. .+|+..|++.+++.++..++.+.+.+++|....     +.+++|+....  ..    ++. .               
T Consensus       179 ~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~  257 (591)
T PTZ00207        179 FS-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIV  257 (591)
T ss_pred             HH-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHH
Confidence            33 468899999999888887777777666553221     11222222000  00    000 0               


Q ss_pred             --------------------------------cc--------------c-C----C------------CC--------C-
Q 009757          302 --------------------------------LL--------------M-G----N------------KH--------K-  309 (526)
Q Consensus       302 --------------------------------~~--------------~-~----~------------~~--------~-  309 (526)
                                                      .+              . +    +            ++        + 
T Consensus       258 yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (591)
T PTZ00207        258 FLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDY  337 (591)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccC
Confidence                                            00              0 0    0            00        0 


Q ss_pred             C-CCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcch--hhhHhhHhHHHHHHHHHHHHHHHHH
Q 009757          310 P-ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ--ASWFSAVPWSVMAFTGYLGGLLSDM  386 (526)
Q Consensus       310 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~--~~~~~~~~~~~~~i~~~~~g~l~dr  386 (526)
                      . .....++.+.+++.++|.+.+..++.......+...+.++.+..-|.+...  ...+.+..++++.+|++..|.+...
T Consensus       338 ~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~  417 (591)
T PTZ00207        338 IAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW  417 (591)
T ss_pred             CCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH
Confidence            0 111127788889999999999999998888888888888888832763322  3337888999999999999999844


Q ss_pred             HHhhcCccchhHHHHHHHHHHHHHHHHHhhcc-CchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHH
Q 009757          387 LIQRGTSVTLTRKILQSIGFIAPGIALIGLTA-AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTA  465 (526)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  465 (526)
                      ..+|+...+..|...+.+..+ +.+..+++.. .+...+.+ ..++.+...+...+......+|++.++.|+-+.+....
T Consensus       418 ~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~-~~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~a  495 (591)
T PTZ00207        418 SQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPL-PYFIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFLG  495 (591)
T ss_pred             HHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHH-HHHHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhHH
Confidence            444432112233344444444 3332222222 22223333 33344444566677788888888889999988888888


Q ss_pred             HhHHHHHH-HHHHhhhccccc----h--------hHHHHHHHHHHHHHHHHHHHHH
Q 009757          466 GTFAAILG-TVGAGFFVELVG----S--------FQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       466 ~~lg~~~~-~~~~g~l~~~~g----~--------~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      .-+|..+. ..+.|.++|+-.    +        +...|++.+++++++.++...+
T Consensus       496 ~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l  551 (591)
T PTZ00207        496 SVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV  551 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence            88888776 668888887432    1        5678888888888777765543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.95  E-value=1.5e-24  Score=214.66  Aligned_cols=366  Identities=16%  Similarity=0.097  Sum_probs=246.4

Q ss_pred             HHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhh
Q 009757          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (526)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~  182 (526)
                      .+++.....++.....+..++.+..|+|-+ ....|+.+.+.++..+..++.|+++|.+|||..++.+.++..+|.++++
T Consensus        48 ~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a  126 (599)
T PF06609_consen   48 AFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA  126 (599)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh
Confidence            344444445556666677789999999864 6779999999999999999999999999999999999999999999999


Q ss_pred             hccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHH
Q 009757          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG  262 (526)
Q Consensus       183 ~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~  262 (526)
                      .+  +|...++.+..+.|+|.|... .....++|..|.|.|....++.....-+...+++.++..+..+.+|||.|++.+
T Consensus       127 tA--~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~  203 (599)
T PF06609_consen  127 TA--QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFI  203 (599)
T ss_pred             cC--CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHH
Confidence            99  999999999999999977755 456669999999999988887776666666678888877777779999999998


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCh-hHHHHHHHh----------------------cccccc----------------
Q 009757          263 LSGFLWVLVWLSATSSTPDRHPQISK-YELEYILRE----------------------KQKPLL----------------  303 (526)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------------------~~~~~~----------------  303 (526)
                      +...+.+++.+++...++++..+.++ ..++...+-                      .....+                
T Consensus       204 i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~  283 (599)
T PF06609_consen  204 IWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVL  283 (599)
T ss_pred             HHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHH
Confidence            87776655544433222221111111 111111100                      000000                


Q ss_pred             ------cCCCCCCCCCCchHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcc---hhhhHhhHhHHHH
Q 009757          304 ------MGNKHKPATVIPPFRRLLSKM-PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLR---QASWFSAVPWSVM  373 (526)
Q Consensus       304 ------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~~~~~~~~~~~~  373 (526)
                            .+.....+.+..+. +++|++ .+...+++.++....++....+.|......++-+..   ..++.....+++.
T Consensus       284 Lv~F~~wE~~~~~~~Pl~P~-~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~  362 (599)
T PF06609_consen  284 LVAFVVWEWFGAPKDPLFPH-RLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGS  362 (599)
T ss_pred             HHHHHHhhhhccCCCCcCCH-HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHH
Confidence                  01111112233333 677874 455556677777777888888999888887776653   5678888888888


Q ss_pred             HHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHH--HHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhh-
Q 009757          374 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI--ALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEI-  450 (526)
Q Consensus       374 ~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  450 (526)
                      .+|.++.|.+..++++-|        ..+.++.+.+.+  +.+.....++....+...++.....+..........+.. 
T Consensus       363 ~~g~~i~g~l~~~ir~~K--------w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~  434 (599)
T PF06609_consen  363 CAGAVILGLLFSKIRHIK--------WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIV  434 (599)
T ss_pred             HHHHHHHHHHHHHccchh--------HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeee
Confidence            999999999998876552        233333333322  233222223332233333333322222222333333334 


Q ss_pred             cccchhhHHHHHHHHHhHHHHHHHHHHhhhc
Q 009757          451 APQYSGVLHGISNTAGTFAAILGTVGAGFFV  481 (526)
Q Consensus       451 ~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~  481 (526)
                      ++++-|++.|+..++..+|+.+|..+...+.
T Consensus       435 p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  435 PDEDIGTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             CchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4479999999999999999999988876654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.95  E-value=6.4e-27  Score=202.01  Aligned_cols=394  Identities=15%  Similarity=0.184  Sum_probs=272.6

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhH-hcChHHHHHHHHH
Q 009757           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVAL  173 (526)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~  173 (526)
                      .+|...+..+|+..|-+++.....+....++..+.+++.++..++.+.|.....+..+++|++.|| +|.|..-++-+..
T Consensus        40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~f  119 (459)
T KOG4686|consen   40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIF  119 (459)
T ss_pred             hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHH
Confidence            456677778888888888888888888899999999999999999999999999999999999996 5888777776677


Q ss_pred             HHHHHhhhhhcc-ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc
Q 009757          174 WSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (526)
Q Consensus       174 ~~~~~~~~~~~~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~  252 (526)
                      ..++.++++... .+.+|.+..+|++.|+|.-...++-++++.-|+..|+.+.++|+......+|..+--.+.+++.+..
T Consensus       120 v~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  120 VFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             HHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence            777777655431 2789999999999999988888999999999999999999999999999999998888888887654


Q ss_pred             Cc------hhH---HHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcC
Q 009757          253 GI------FGP---FVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK  323 (526)
Q Consensus       253 gw------~~~---f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (526)
                      +-      +..   .+..+...+...+......--.        ++..+.+....+      ....+.++..+.+.  ..
T Consensus       200 ~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~--------D~rAerilh~e~------g~~Ge~pkLtdv~~--f~  263 (459)
T KOG4686|consen  200 GRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLS--------DDRAERILHLEE------GFLGEEPKLTDVNT--FY  263 (459)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hhHHHHHHhhhc------CcccCCcccccccc--cC
Confidence            31      111   1111222221111111110000        001111111000      00001111111111  15


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHH
Q 009757          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (526)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (526)
                      |.+|.+.++.++++.+.+-+....|.++++.+|+|+..++.+.+.....+.+..++.|.++||+|++-+       ++..
T Consensus       264 ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~-------wv~~  336 (459)
T KOG4686|consen  264 PPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW-------WVAS  336 (459)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh-------hHHH
Confidence            789999999999999999999999999999999999999999999999999999999999999999821       1111


Q ss_pred             -HHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhc
Q 009757          404 -IGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV  481 (526)
Q Consensus       404 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~  481 (526)
                       ....+.+-..+.+... +++..  ..+++.... ......+..+..+.| ++.|+++|.++.+.++|-++.|.+.|.+.
T Consensus       337 a~~~tl~~H~~l~Ft~l-sPy~~--m~~lGLsys-llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~  412 (459)
T KOG4686|consen  337 ACILTLLGHSGLFFTFL-SPYTS--MTFLGLSYS-LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIA  412 (459)
T ss_pred             HHHHHHHHhhhHHhhhc-cHHHH--HHHHhhhHH-HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheee
Confidence             1111111122222222 22221  222333332 222334555566666 58999999999999999999999999999


Q ss_pred             cccchhH---HHHHHHHHHHHHHHHHHHHHhcCceec
Q 009757          482 ELVGSFQ---GFLLLTSLLYFLSALFYIIFSTGERVN  515 (526)
Q Consensus       482 ~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  515 (526)
                      |.-|+|.   ..|+..+.+++....+.+.+.++++.+
T Consensus       413 d~~g~y~~le~ffl~~~~~aL~svgil~~~N~kq~gn  449 (459)
T KOG4686|consen  413 DGDGSYDNLEAFFLIIGLMALTSVGILFYLNKKQSGN  449 (459)
T ss_pred             cCCCchhhHHHHHHHHHHHHHHHHHHHhheeccccCC
Confidence            9887553   445555556666665555554444433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.94  E-value=1.4e-23  Score=203.15  Aligned_cols=370  Identities=14%  Similarity=0.142  Sum_probs=264.2

Q ss_pred             HHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhc-ChHHHHHHHHHHHHHHhhhhh
Q 009757          105 ALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-GKIIMAWGVALWSLATFLTPW  183 (526)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G-rr~~l~~~~~~~~~~~~~~~~  183 (526)
                      +..+++.++..+.+.|.++.+.++.|.|..|+|.+.++..+...+.++++|.++||++ +||.+.+..++.++.......
T Consensus         8 s~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~   87 (400)
T PF03825_consen    8 SLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666778888899999999999999999999999999999999999999986 577787777777777666666


Q ss_pred             ccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHH-HHHHHhhcC---chhHHH
Q 009757          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVL-SPILMSQAG---IFGPFV  259 (526)
Q Consensus       184 ~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l-~~~l~~~~g---w~~~f~  259 (526)
                      .  ++++.+++..++..+......|...++..+...  +++.-.|-.....++|.+++... +..+....+   ....++
T Consensus        88 ~--~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~  163 (400)
T PF03825_consen   88 S--SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY  163 (400)
T ss_pred             h--ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence            6  889998888888888888889999999888874  45566777777788888777554 233333333   234556


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHH
Q 009757          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (526)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (526)
                      +.+...++.....+ ..|+.|.+++                    .++..++....+..+++|+|+++...+..++....
T Consensus       164 i~~~~~~ll~~~~l-~lp~~~~~~~--------------------~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~  222 (400)
T PF03825_consen  164 IAAILSLLLAGFAL-FLPKTPPKRS--------------------AKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGIS  222 (400)
T ss_pred             HHHHHHHHHHHHHH-hCCCCccccc--------------------cCCCcccccchHHHHHhcCccHHHHHHHHHHHHHH
Confidence            65555544443333 3455542211                    11111122223445799999999999999998889


Q ss_pred             HHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccC
Q 009757          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA  419 (526)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (526)
                      ......+.+.|+++.-|.+....+.+.++..++.++.-...+++.+|++.+         .++.++.+..++=..++...
T Consensus       223 ~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~---------~ll~~a~~~~~vR~~l~a~~  293 (400)
T PF03825_consen  223 HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK---------WLLLLALVAYAVRWLLYAYF  293 (400)
T ss_pred             HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHh
Confidence            999999999999994337778888888888888888888999999999887         55666666666666555554


Q ss_pred             -chhHHHHHHHHH----HHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHH-hHHHHHHHHHHhhhccccch-----h
Q 009757          420 -KSPVMASAWLTL----AIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAG-TFAAILGTVGAGFFVELVGS-----F  487 (526)
Q Consensus       420 -~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~-~lg~~~~~~~~g~l~~~~g~-----~  487 (526)
                       ++.+.......+    -+...+........++++..| +.|++++|+++... .+|..+|..++|++.|+.|.     +
T Consensus       294 ~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~  373 (400)
T PF03825_consen  294 SDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDW  373 (400)
T ss_pred             cCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhH
Confidence             333333322222    333344555666667777666 69999999998865 69999999999999998872     2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 009757          488 QGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      ...+.+.+++.++..+++.++
T Consensus       374 ~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  374 SAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            344555555555555444444

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=2.1e-24  Score=220.31  Aligned_cols=368  Identities=16%  Similarity=0.088  Sum_probs=246.9

Q ss_pred             hhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccc
Q 009757          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (526)
Q Consensus       126 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~  205 (526)
                      .+.+..+.....+..+++.+|..+|++++|.++||+|||++++++.++..++.++.+++  +|++.+++.|++.|++.++
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a--~~~~~~~~~Rfl~G~~~~~  187 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA--PNYWMFLIFRFLSGFFGSG  187 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhccc
Confidence            35567788889999999999999999999999999999999999999999999999999  9999999999999999999


Q ss_pred             hhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 009757          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ  285 (526)
Q Consensus       206 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (526)
                      .......++.|++++++|+.+..+ ......+..++++.++++..  +||+.+++..++.++.+++ +++.+|+|+....
T Consensus       188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~  263 (521)
T KOG0255|consen  188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLS  263 (521)
T ss_pred             hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHH
Confidence            999999999999999999999999 77788888888888888877  8999999999988877666 5566677764322


Q ss_pred             CCh-hHHHHHHHhcc-------cc-----cc---cCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHH
Q 009757          286 ISK-YELEYILREKQ-------KP-----LL---MGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPI  349 (526)
Q Consensus       286 ~~~-~~~~~~~~~~~-------~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (526)
                      ..+ ++..+..++..       ..     ..   ...+....++...+.++++.|++....+...+..+.......-++.
T Consensus       264 ~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~  343 (521)
T KOG0255|consen  264 KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSL  343 (521)
T ss_pred             cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence            221 22222222110       00     00   0000111122234667788876554444444433222222222222


Q ss_pred             HHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCc--hh-HHHH
Q 009757          350 YFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK--SP-VMAS  426 (526)
Q Consensus       350 ~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~  426 (526)
                      .... +|.+   ........+.....+....+...|+.|||         .....+.....++++......  .. +...
T Consensus       344 ~~~~-lg~~---~~~~~~~~~~~~~p~~~~~~~~~~~~gR~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (521)
T KOG0255|consen  344 NVSG-LGGN---IYLNFTLSGLVELPAYFRNGLLLPEFGRR---------PPLFLSLFLAGIGLLLFGWLPDDLGGWLHW  410 (521)
T ss_pred             hhhh-cCch---HHHHHHHHHHHHhhHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence            2222 3433   23333344446666777778999999888         444444444444444433332  22 2344


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHH-HHHHH
Q 009757          427 AWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYF-LSALF  504 (526)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~-~~~~~  504 (526)
                      ....++.+...........+..|..| ..|+.+.+.......++.+++|.+.-......  ....+...+.+.. .+.+.
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~  488 (521)
T KOG0255|consen  411 ILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMF--PLLGLILFGWLALLLGLLS  488 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccchHHHHHHHHHHHHHHH
Confidence            45555566666666666888899999 49999999999999999999998875544422  1222222333333 33344


Q ss_pred             HHHHhcCcee
Q 009757          505 YIIFSTGERV  514 (526)
Q Consensus       505 ~~~~~~~~~~  514 (526)
                      ..++++.+..
T Consensus       489 ~~~lpet~~~  498 (521)
T KOG0255|consen  489 LLLLPETKGK  498 (521)
T ss_pred             HhcCcccCCC
Confidence            3555555443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.94  E-value=4.3e-23  Score=207.67  Aligned_cols=396  Identities=14%  Similarity=0.093  Sum_probs=230.4

Q ss_pred             HHHHHHHHhhhhhhhhcc-hhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhH-hcChHHHHHHHHHHHHHHhhh
Q 009757          104 LALALALCNADRVVMSVA-IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLT  181 (526)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~  181 (526)
                      +++..+...+..+.+... ..++.+++|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++.+++
T Consensus        26 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~  105 (500)
T PRK09584         26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALV  105 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444 445568899999999999888877777777899999999 599999999999999999888


Q ss_pred             hhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcch--hhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHH
Q 009757          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE--RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (526)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~  259 (526)
                      +++. ++.+.++++|+++|+|.|...+...+++.|++|+++  |+.+++++..+.++|..+||.+++++.+++|||+.|+
T Consensus       106 ~~~~-~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~  184 (500)
T PRK09584        106 AWSG-HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFA  184 (500)
T ss_pred             HHhc-ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence            8761 345677788999999999989999999999998543  4568899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH---HhhccCCCCCCC--CCChhHHHHHH-----HhcccccccCCCCCCCC---------------CC
Q 009757          260 IFGLSGFLWVLVW---LSATSSTPDRHP--QISKYELEYIL-----REKQKPLLMGNKHKPAT---------------VI  314 (526)
Q Consensus       260 ~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---------------~~  314 (526)
                      +.++..++..+..   ....++.+++..  +.+........     -...........+....               ..
T Consensus       185 i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (500)
T PRK09584        185 LSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEA  264 (500)
T ss_pred             HHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            9876544433322   222233211111  01111000000     00000000000000000               00


Q ss_pred             chHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--hcCCc------chhhhHhhHhHHHHHHHHHHHHHHHHH
Q 009757          315 PPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFV--YHIDL------RQASWFSAVPWSVMAFTGYLGGLLSDM  386 (526)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~------~~~~~~~~~~~~~~~i~~~~~g~l~dr  386 (526)
                      ...++.-+ ++.+.. +..++....++......+.++...  ...+.      ...+++.++..+..++..++..++.+|
T Consensus       265 ~~~~~~~~-~~~~~~-~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~  342 (500)
T PRK09584        265 FAMKGAAR-RKMIVA-FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNK  342 (500)
T ss_pred             hhcCHHHH-HHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            00001111 222222 222233444555555555554431  11221      125566666776777777777777777


Q ss_pred             HHhhcCccchhHHHHHHHHHHHHHHHHHhhccCch---------hHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchh
Q 009757          387 LIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS---------PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSG  456 (526)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g  456 (526)
                      .++|..   ..  ..+.+++++.+++++.+.....         .++.+...++.........+....+..+..| +.||
T Consensus       343 l~~r~~---~~--~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg  417 (500)
T PRK09584        343 MGDRLP---MP--HKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMG  417 (500)
T ss_pred             hCcCCC---cH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHH
Confidence            665521   12  2334444444444443322111         2333333334344444555555555666655 7999


Q ss_pred             hHHHHHHHHHhHHHHHHHHHHhhhcc---------ccchhHHHHHHHHHHHHHHHHHHHH
Q 009757          457 VLHGISNTAGTFAAILGTVGAGFFVE---------LVGSFQGFLLLTSLLYFLSALFYII  507 (526)
Q Consensus       457 ~~~g~~~~~~~lg~~~~~~~~g~l~~---------~~g~~~~~~~~~~~~~~~~~~~~~~  507 (526)
                      +++|+......+|..++..+.+....         ..+.+...|...++..++..++++.
T Consensus       418 ~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        418 FIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99998877777777776666643221         1123667777777665544443333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.93  E-value=3.1e-23  Score=196.38  Aligned_cols=377  Identities=16%  Similarity=0.108  Sum_probs=254.8

Q ss_pred             HHHHHHHhhhhhhhhcchhhhhhh-cCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHH--HHHH-hh
Q 009757          105 ALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW--SLAT-FL  180 (526)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~--~~~~-~~  180 (526)
                      .+.++..++..+...+..+...++ .|+|.+++|.+.++..+...+.+++.|.++||+|.||-++....+.  ..+. +.
T Consensus        13 s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~   92 (412)
T PF01306_consen   13 SLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFI   92 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            344444455566777777777765 8999999999999999999999999999999999766554433222  2222 22


Q ss_pred             hhhcc--ccchH-HHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhH
Q 009757          181 TPWAA--DTSLL-ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGP  257 (526)
Q Consensus       181 ~~~~~--~~~~~-~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~  257 (526)
                      ..+.+  ..|++ ..+++-+..|+......|+..+++.++.  ++.+.-.|-....+++|.+++..++|.+.+ .+-+..
T Consensus        93 ~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~  169 (412)
T PF01306_consen   93 YVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNII  169 (412)
T ss_dssp             HTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHH
Confidence            22220  12322 3344444556666666777788777775  566777888899999999999999999987 355678


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHH
Q 009757          258 FVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHS  337 (526)
Q Consensus       258 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (526)
                      ||+..+..++..++.++..|+.+++....+.                ...++++...++..+++|+|++|.+.+......
T Consensus       170 fwi~s~~~~il~lll~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~  233 (412)
T PF01306_consen  170 FWIASAAAIILLLLLLLLKPDVPPQAEVADA----------------LGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVA  233 (412)
T ss_dssp             HHHHHHHHHHHHHHHHSS---SSSSS-SSTT----------------SSS------HHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcCchhhhhhcc----------------cccCCCCCcHHHHHHHhcchhHHHHHHHHHHHH
Confidence            8877766666665555555554433221110                111122223455678999999999988888877


Q ss_pred             HHHHHHHHhHHHHHHHHh---cCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHH
Q 009757          338 WGFFVILSWMPIYFNFVY---HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI  414 (526)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (526)
                      ..+..+....+.|.+..+   +.+....|.+.+...+..++...+.+++.+|+|.|         ..+.++..+..+=..
T Consensus       234 ~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k---------~~Lllag~i~~iRi~  304 (412)
T PF01306_consen  234 AIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK---------NLLLLAGVIMAIRII  304 (412)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH---------hHHHHHHHHHHHHHH
Confidence            788888777888887632   34445688888888889999999999999999998         345555666777777


Q ss_pred             hhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHH-HHHHhHHHHHHHHHHhhhccccchhHHHHH
Q 009757          415 GLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGIS-NTAGTFAAILGTVGAGFFVELVGSFQGFLL  492 (526)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~-~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~  492 (526)
                      .....++++.....-.+-..-.........-+..+..| +..++.+.+. +...+++..+.+.+.|.+.|+.| ++..|+
T Consensus       305 ~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tyl  383 (412)
T PF01306_consen  305 GSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYL  383 (412)
T ss_dssp             HHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHH
Confidence            77777888877766666555555556666666666666 6778888885 57778999999999999999998 887887


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 009757          493 LTSLLYFLSALFYIIFST  510 (526)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~  510 (526)
                      +.+.+.+...++..+..+
T Consensus       384 img~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  384 IMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHheeeec
Confidence            777776665555555433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.92  E-value=4.1e-22  Score=195.09  Aligned_cols=379  Identities=16%  Similarity=0.109  Sum_probs=247.8

Q ss_pred             HHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHh----HhcChHHHHHH-HHHHHHHHhhhh
Q 009757          108 LALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD----YYGGKIIMAWG-VALWSLATFLTP  182 (526)
Q Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d----r~Grr~~l~~~-~~~~~~~~~~~~  182 (526)
                      .+...+......+.++.+.+++|.+..+.+++..+..+...+.+++.|+++|    |+||||.++++ .....++.++++
T Consensus        13 ~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~   92 (477)
T TIGR01301        13 AAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIG   92 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            3333445556666677788999999999999999999999999999999999    59999988774 666666667777


Q ss_pred             hccccchH-----------------HHHHHHHHhhhhccchhhhhHHHHhhhcCcchh--hHHHHHHHhhhhhHHHHHHH
Q 009757          183 WAADTSLL-----------------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTER--ARAVAIAMGGFTSGNAIGLV  243 (526)
Q Consensus       183 ~~~~~~~~-----------------~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~ig~~  243 (526)
                      ++  ++++                 .++++-.+..++.....+...++++|.+|+++|  +.++++.+...++|.++|+.
T Consensus        93 ~~--~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~  170 (477)
T TIGR01301        93 FA--ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYA  170 (477)
T ss_pred             hC--chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76  4432                 233333445557777888899999999998765  58999999999999999999


Q ss_pred             HHHHH--Hhhc-------------CchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCC
Q 009757          244 LSPIL--MSQA-------------GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKH  308 (526)
Q Consensus       244 l~~~l--~~~~-------------gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (526)
                      +++..  .+.+             +.|..|++.+++.++..++..+..+|.|...++..+++ +            .++.
T Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~-~------------~~~~  237 (477)
T TIGR01301       171 AGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS-E------------AAPP  237 (477)
T ss_pred             HHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh-h------------cccc
Confidence            99875  2221             56889999888888887777777777654221111000 0            0000


Q ss_pred             CCCCCCchHHHHHc-----CchHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HhcCCcch----------hhhHhhHhHHH
Q 009757          309 KPATVIPPFRRLLS-----KMPTWSIIVANAMHSWGFFVILSWMPIYFNF-VYHIDLRQ----------ASWFSAVPWSV  372 (526)
Q Consensus       309 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~----------~~~~~~~~~~~  372 (526)
                      ++......++++++     .|.++.+++..++..++.+.+..|.+.|+.+ .++-++..          ..+......+.
T Consensus       238 ~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~  317 (477)
T TIGR01301       238 SKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVV  317 (477)
T ss_pred             cccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence            01111122333333     2568889999999999999999999988874 45543221          12333444455


Q ss_pred             HHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCc------------------h---hHHHHH-HHH
Q 009757          373 MAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK------------------S---PVMASA-WLT  430 (526)
Q Consensus       373 ~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~---~~~~~~-~~~  430 (526)
                      ..+.+++..++.+|+|+|+        ....++.++.++++....+..                  +   .+..+. ...
T Consensus       318 ~~i~s~~l~~l~~~~g~~k--------~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  389 (477)
T TIGR01301       318 LGITSIGMEKLCRGWGAGK--------RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAI  389 (477)
T ss_pred             HHHHHHHHHHHHHHhccch--------hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHH
Confidence            5566677788888887431        222333222222222211100                  0   122222 233


Q ss_pred             HHHHHHhhhhhhHHHHHHhhcc---cchhhHHHHHHHHHhHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHHHHHH
Q 009757          431 LAIGMKSFSHSGFLVNLQEIAP---QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG-SFQGFLLLTSLLYFLSALFYI  506 (526)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  506 (526)
                      +|...... ....++++.+..+   +..|..+|+.|.+..+.+.+.....|.+.+..| +...++.+.++.++++.++.+
T Consensus       390 ~Gi~~A~~-~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       390 LGIPLAIT-YSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             hhHHHHHH-HHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            33333333 3444455554444   466999999999999999999999888777666 355677777777777777766


Q ss_pred             HHhc
Q 009757          507 IFST  510 (526)
Q Consensus       507 ~~~~  510 (526)
                      +..+
T Consensus       469 ~~~~  472 (477)
T TIGR01301       469 ILLP  472 (477)
T ss_pred             HhCC
Confidence            5533

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.92  E-value=1.6e-21  Score=192.37  Aligned_cols=357  Identities=18%  Similarity=0.120  Sum_probs=260.9

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHH-HHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHH
Q 009757          134 SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA-WGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN  212 (526)
Q Consensus       134 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~  212 (526)
                      +..++..++..+..++..|+.|.++|+-|+||.++ +...+..+++.++.+....+++...+.-++.-++.+......++
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578888999999999999999999998776554 45555555666666654355655666666777788888899999


Q ss_pred             HHhhhcCcchh--------------------------hHHHHHHHhhhhhHHHHHHHHHHHHHhh--------cCchhHH
Q 009757          213 MVARWFPQTER--------------------------ARAVAIAMGGFTSGNAIGLVLSPILMSQ--------AGIFGPF  258 (526)
Q Consensus       213 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~ig~~l~~~l~~~--------~gw~~~f  258 (526)
                      ++.|..+++++                          ++..+.-.....+|.++.-.+.-.+...        .+.|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999998888                          8999999999999998888777665432        2358888


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCC-ChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHH
Q 009757          259 VIFGLSGFLWVLVWLSATSSTPDRHPQI-SKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHS  337 (526)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (526)
                      .+.++..++..+..++..|+.|..++.. ...-....               -++..+.+|++.|.|.+...++.++++.
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g---------------~~~l~~t~k~~~~~~~~~~fLia~~l~~  294 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFG---------------FKRLWRTFKEIRKLRQLFLFLIAYFLYS  294 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHH---------------HHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            8888888888888888888876532211 11100000               0112235667778899999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc
Q 009757          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (526)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (526)
                      -+...+......|.++.+|++..+...+.....+.+++|.++.|++.||+|.|..      +.+.........+.+..+.
T Consensus       295 dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~------~~l~~~l~~~~~i~~~g~~  368 (477)
T PF11700_consen  295 DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK------RTLLISLILWIIIPLYGLF  368 (477)
T ss_pred             HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998821      1111111111122222211


Q ss_pred             -------cCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHH
Q 009757          418 -------AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQG  489 (526)
Q Consensus       418 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~  489 (526)
                             ...+.+.+.+..++.+.+.+...+..-++..++.| ++.+..+|++...+...+.+||.+.|.+.+.+|+.+.
T Consensus       369 G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~  448 (477)
T PF11700_consen  369 GFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRY  448 (477)
T ss_pred             HhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence                   12334444444434333444444555555555555 6889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Q 009757          490 FLLLTSLLYFLSALFYIIFSTG  511 (526)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~  511 (526)
                      .+....++.+++.+++..+..+
T Consensus       449 g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  449 GFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             HHHHHHHHHHHHHHHHhhccch
Confidence            9999988888888887666443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09669 putative symporter YagG; Provisional

Probab=99.92  E-value=2.4e-22  Score=200.91  Aligned_cols=334  Identities=15%  Similarity=0.084  Sum_probs=222.5

Q ss_pred             chhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhH----hcCh-HHHHHHHHHHHHHHhhhhhcc----ccchHH
Q 009757          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGK-IIMAWGVALWSLATFLTPWAA----DTSLLA  191 (526)
Q Consensus       121 ~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~----~~~~~~  191 (526)
                      ....+.+++|++..++|.+.++..+..++..|+.|+++||    +||| +.++++.+..+++.++....+    ...++.
T Consensus        32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~  111 (444)
T PRK09669         32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY  111 (444)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            4566778899999999999999999999999999999999    6774 566677777777766554441    122455


Q ss_pred             HHHHHHHhhhhccchhhhhHHHHhhhc-CcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh-------hcCchhHHHHHHH
Q 009757          192 LLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMS-------QAGIFGPFVIFGL  263 (526)
Q Consensus       192 l~~~r~l~Gig~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-------~~gw~~~f~~~~~  263 (526)
                      +++..++.+++.........++.+|+. ++++|++..++...+..+|..+++.+...+..       ..+|+..+.+.++
T Consensus       112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i  191 (444)
T PRK09669        112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL  191 (444)
T ss_pred             HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence            666677777777777777889999998 56889999999988888888888776554443       2468888888887


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 009757          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (526)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (526)
                      +.++..+..++..+|.+++.+                       +++.+..++++.++|||.++.+++..++........
T Consensus       192 i~~v~~~~~~~~~~e~~~~~~-----------------------~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~  248 (444)
T PRK09669        192 LGVVLFFCCFFMTKERYTPEV-----------------------DNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTR  248 (444)
T ss_pred             HHHHHHHHHhCCeEEecCCCC-----------------------cCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            777666655555444322110                       011223456778899999988877777666666555


Q ss_pred             HHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhH
Q 009757          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV  423 (526)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (526)
                      ....+.|.+...+ +....+.+.....+..+++.++.+++.||+++|+       ...............+.+...++.+
T Consensus       249 ~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  320 (444)
T PRK09669        249 GGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR-------AFKWTIVAFVILSALIFFIPPSNVW  320 (444)
T ss_pred             hhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHhCcchHH
Confidence            5544444444333 2333444555556777888899999999999882       2222211111111111122223444


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHhhcc--------cchhhHHHHHHHHHhHHHHHHHHHHhhhccccc
Q 009757          424 MASAWLTLAIGMKSFSHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (526)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g  485 (526)
                      ...+..++.....+...+....+..|..+        +..|..+|..+.+..+|..+++.+.|.+.+..|
T Consensus       321 ~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        321 LIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33333333333344445666666666643        235778899999999999999999999998776

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.92  E-value=7.4e-23  Score=189.87  Aligned_cols=368  Identities=15%  Similarity=0.150  Sum_probs=277.9

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHH
Q 009757           92 FITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGV  171 (526)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  171 (526)
                      +..++||.+++++++..+.+.+.+..+++...+....|| +....-|+.-+|.+.+....+++-|+.|++|-|...+++.
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            356788999999999999999999999999888888899 7778889999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhccc----cchH--HHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHH
Q 009757          172 ALWSLATFLTPWAAD----TSLL--ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS  245 (526)
Q Consensus       172 ~~~~~~~~~~~~~~~----~~~~--~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~  245 (526)
                      .+..+|..+-..+..    +.++  ....+..+.+.+.-........+..-||++++|..+..+-..+..+|.++|.++.
T Consensus       117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp  196 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP  196 (480)
T ss_pred             HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence            999999998666532    3455  7778899999998888888888999999999999999999999999999999999


Q ss_pred             HHHHhhc------Cchh--HHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchH
Q 009757          246 PILMSQA------GIFG--PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF  317 (526)
Q Consensus       246 ~~l~~~~------gw~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (526)
                      ..+..+-      .|..  .|+..+++..+.+++..+..+++|+.++......                 ..+.+..+++
T Consensus       197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~-----------------~~~~~f~~si  259 (480)
T KOG2563|consen  197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAA-----------------LQDASFPKSI  259 (480)
T ss_pred             ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhh-----------------hhcCcHHHHH
Confidence            8887643      3544  4555555555555666666666555443221111                 1123456788


Q ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchh
Q 009757          318 RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLT  397 (526)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~  397 (526)
                      ++.++|+++..+.+++.+....+++..+.+..-+.. .|++...+|.......+++++++++.|.+.||.++.+.     
T Consensus       260 ~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~-----  333 (480)
T KOG2563|consen  260 KSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKL-----  333 (480)
T ss_pred             HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHH-----
Confidence            899999999999999888888888888777766666 47888899999999999999999999999999887631     


Q ss_pred             HHHHHHHHHH-HHH-HHHHhhc--cCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHH
Q 009757          398 RKILQSIGFI-APG-IALIGLT--AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILG  473 (526)
Q Consensus       398 ~~~~~~~~~~-~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~  473 (526)
                        ........ ... ..+....  .....+....+..++.+..+..+...-..++..+|..-++..|+.+..+++-+.+-
T Consensus       334 --~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~  411 (480)
T KOG2563|consen  334 --TTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVIL  411 (480)
T ss_pred             --HHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHH
Confidence              11111111 111 1111111  12223333333444444444444333445666778888899999999999999999


Q ss_pred             HHHHhhhccccc
Q 009757          474 TVGAGFFVELVG  485 (526)
Q Consensus       474 ~~~~g~l~~~~g  485 (526)
                      ..+.+...+..+
T Consensus       412 ~~~~~~~~~~~~  423 (480)
T KOG2563|consen  412 VFIMGILAEDLG  423 (480)
T ss_pred             HHHHHHHhhccC
Confidence            999999888766

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.91  E-value=2e-29  Score=253.24  Aligned_cols=402  Identities=18%  Similarity=0.196  Sum_probs=258.4

Q ss_pred             HHHHHHHhhhhhhhhcchhhhh--hhcCC---------ccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHH
Q 009757          105 ALALALCNADRVVMSVAIVPLS--LAHGW---------SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (526)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~--~~~~~---------s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  173 (526)
                      .++.+..+++....+...+...  ..++.         +..+.+++.+...+|..+|++++|.++||+|||+.+.++.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            3444666777666665554444  22222         123578999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcccc---chHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 009757          174 WSLATFLTPWAADT---SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (526)
Q Consensus       174 ~~~~~~~~~~~~~~---~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~  250 (526)
                      ..++.++.+++  +   +++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+..
T Consensus        86 ~~i~~~~~~~~--~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~  163 (451)
T PF00083_consen   86 MIIGSILIAFA--PSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY  163 (451)
T ss_pred             ccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999  8   999999999999999999999999999999999999999999999999999999888766544


Q ss_pred             hc---CchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCh-hHHHHHHHhcc-----cc-cc--cCCCCCCCCCCchHH
Q 009757          251 QA---GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISK-YELEYILREKQ-----KP-LL--MGNKHKPATVIPPFR  318 (526)
Q Consensus       251 ~~---gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~-~~--~~~~~~~~~~~~~~~  318 (526)
                      ..   +||..+++.+++.++..+. ..+.||+|+.....++ +|.++..++..     +. ..  .++.++..+....++
T Consensus       164 ~~~~~~Wr~~~~~~~~~~l~~~~~-~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (451)
T PF00083_consen  164 YSDNWGWRILLIFGAIPSLLVLLL-RFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWR  242 (451)
T ss_pred             cccccccccccccccccccccccc-ccccccccceecccccccccccccccccccccccccccccccccccccccceeee
Confidence            33   4999999988887765544 4567888875322221 12222111110     00 00  000001111113455


Q ss_pred             HHHcCch----HHHHHHHHHHHH-HHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCc
Q 009757          319 RLLSKMP----TWSIIVANAMHS-WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS  393 (526)
Q Consensus       319 ~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~  393 (526)
                      ++++++.    +...+....+.. .+......+.+.++++ .|.+..  -.......+...++.++..++.||+|||+. 
T Consensus       243 ~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~-  318 (451)
T PF00083_consen  243 DLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKL-  318 (451)
T ss_pred             eccccccccccccccccccccccccccccccccccccccc-cccccc--cccccccccccccccccccccccccccccc-
Confidence            6666533    223232333332 2334445555666555 576665  222334445566777788899999999943 


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhh-----ccCch----hHHHHHHHHHH-HHHHhhhhhhHHHHHHhhcc-cchhhHHHHH
Q 009757          394 VTLTRKILQSIGFIAPGIALIGL-----TAAKS----PVMASAWLTLA-IGMKSFSHSGFLVNLQEIAP-QYSGVLHGIS  462 (526)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~  462 (526)
                              ...+....++....+     ...+.    ....+....+. .++.....+..+.+..|.+| +.|+++.|+.
T Consensus       319 --------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~  390 (451)
T PF00083_consen  319 --------LIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLS  390 (451)
T ss_pred             --------cccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence                    222222222222211     11121    12222222222 22222333455677789988 7999999999


Q ss_pred             HHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCceeccccccc
Q 009757          463 NTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAGE  521 (526)
Q Consensus       463 ~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (526)
                      ..++.+++++++.+...+.+..+.....+...+++.+..++.+.+++++++++.+|.++
T Consensus       391 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~  449 (451)
T PF00083_consen  391 YAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQE  449 (451)
T ss_pred             cccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence            99999999999999999888876333333334444444444445566776666655543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.91  E-value=2.1e-20  Score=183.82  Aligned_cols=391  Identities=12%  Similarity=0.083  Sum_probs=233.9

Q ss_pred             HHHHHHHHHhhhhhhhhcchhhh-hhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHh-cChHHHHHHHHHHHHHHhh
Q 009757          103 MLALALALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFL  180 (526)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~  180 (526)
                      .++...+...+..+.+...+|.+ .+++|.++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++
T Consensus        13 ~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~ll   92 (493)
T PRK15462         13 YVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVV   92 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHH
Confidence            33334444444444454455544 566899999999999999999999999999999999 9999999999999999877


Q ss_pred             hhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcc--hhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHH
Q 009757          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQT--ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (526)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f  258 (526)
                      +++.. .+...++++..+.++|.|...+...++++|.+|++  +|..++++...+.++|..++|.+.+++.+..||++.|
T Consensus        93 l~~~~-~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F  171 (493)
T PRK15462         93 LGASE-IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGF  171 (493)
T ss_pred             HHHhh-cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHH
Confidence            76541 12233444445555677777788889999999875  6999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCC---CCCCChhHHHH----------------HHHh-ccccc---------------c
Q 009757          259 VIFGLSGFLWVLVWLSATSSTPDR---HPQISKYELEY----------------ILRE-KQKPL---------------L  303 (526)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----------------~~~~-~~~~~---------------~  303 (526)
                      .+.++..++..+..+...+..++.   ++...++++..                .... .....               .
T Consensus       172 ~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (493)
T PRK15462        172 GLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVL  251 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            987765544444333322111110   01111111100                0000 00000               0


Q ss_pred             cCCCCCCCCCCchHHHHHcCc--hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh-----cCCcchhhhHhhHhHHHHHHH
Q 009757          304 MGNKHKPATVIPPFRRLLSKM--PTWSIIVANAMHSWGFFVILSWMPIYFNFVY-----HIDLRQASWFSAVPWSVMAFT  376 (526)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~~~~~~~~~~~~~i~  376 (526)
                      ......+ ....   +  |+|  .+..+.+...+....+....+-+..|.++..     |++ ...++..++..+..++.
T Consensus       252 ~~~~~~~-~~~~---e--r~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l  324 (493)
T PRK15462        252 AKIYRKA-ENQK---Q--RKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLC  324 (493)
T ss_pred             HHHHHhc-CCHH---H--HhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHH
Confidence            0000000 0000   1  111  1223333333444444445555666665532     322 23667778888888888


Q ss_pred             HHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc---cC----chhHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 009757          377 GYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT---AA----KSPVMASAWLTLAIGMKSFSHSGFLVNLQE  449 (526)
Q Consensus       377 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (526)
                      +++.+++-.|..+|+.......|......+...+...+.+.   ..    .+.++.+...++......+..|.-.+.+.+
T Consensus       325 ~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~  404 (493)
T PRK15462        325 GVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITR  404 (493)
T ss_pred             HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence            88888887777554332233334443333333333222211   01    233444444444444555666777787888


Q ss_pred             hcc-cchhhHHHHHHHHH-hHHHHHHHHHHhhhccc-----------cchhHHHHHHHHHHHHHH
Q 009757          450 IAP-QYSGVLHGISNTAG-TFAAILGTVGAGFFVEL-----------VGSFQGFLLLTSLLYFLS  501 (526)
Q Consensus       450 ~~~-~~~g~~~g~~~~~~-~lg~~~~~~~~g~l~~~-----------~g~~~~~~~~~~~~~~~~  501 (526)
                      +.| +.+|+.+|+..... .+|..++..+.+...+.           ...|...|...+...+++
T Consensus       405 laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        405 IEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            888 69999999986643 56766666666655311           113556677666655544

>TIGR00788 fbt folate/biopterin transporter

Probab=99.91  E-value=2.2e-22  Score=200.78  Aligned_cols=382  Identities=12%  Similarity=0.008  Sum_probs=241.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhc-----ChHHHHHHHH
Q 009757           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-----GKIIMAWGVA  172 (526)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G-----rr~~l~~~~~  172 (526)
                      ...+.++...++..+..........|.+.+++|++.++++...++..++..+-.+ +|.++||++     ||+.++++.+
T Consensus        25 ~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        25 RVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGL  103 (468)
T ss_pred             chHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHH
Confidence            3445566667777777733444556666678999999999999999999999666 999999997     7777788777


Q ss_pred             HH-HHHHhhhhhccccchHHH-HHHHHHhhhhccchhhhhHHHHhhhcCcchhhHH---HHHHHhhhhhHHHHHHHHHHH
Q 009757          173 LW-SLATFLTPWAADTSLLAL-LAMRAVVGLAEGVALPAMNNMVARWFPQTERARA---VAIAMGGFTSGNAIGLVLSPI  247 (526)
Q Consensus       173 ~~-~~~~~~~~~~~~~~~~~l-~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~G~~ig~~l~~~  247 (526)
                      +. +++....+..  ++.... .+..++.+++.+...++..+++.|..+ +++...   .++.....++|.++|+.+++.
T Consensus       104 l~~~~~~~~l~~~--~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~  180 (468)
T TIGR00788       104 LGSAILYGLLPGK--VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGP  180 (468)
T ss_pred             HHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHH
Confidence            76 3444444443  454444 448899999999999999999999998 554443   334444456899999999999


Q ss_pred             HHhhcCchhHHHHHHHHHHHHHHHHHhhccCCCC-CCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchH
Q 009757          248 LMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPD-RHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPT  326 (526)
Q Consensus       248 l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (526)
                      +.+.++|+..|++.+++.++..+.. .+.+|++. ..+...+++.........     .......+.....++.+++|.+
T Consensus       181 l~~~~~~~~~f~~~a~l~ll~~~~~-~~~~E~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~i  254 (468)
T TIGR00788       181 LLDKTLTRILFLITAALLLLQLFVS-NLSKERRAFVRPRIGTYLEMNMALLTL-----GVLANVKVQILGLRGAIQLLEI  254 (468)
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHH-Hhcccccccccccccccchhhhhhhhh-----hHHHHHHHHHHHHHHHHhcHHH
Confidence            9999999999999988877764433 44455421 111100000000000000     0000000112245566788888


Q ss_pred             HHHHHHHHH-HHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHH
Q 009757          327 WSIIVANAM-HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG  405 (526)
Q Consensus       327 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  405 (526)
                      +...+..++ +.........+. .+..+..|+++.+.|.+....+++.+++..+.+++.+|++.|         ..+.++
T Consensus       255 ~~~l~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r---------~~l~~~  324 (468)
T TIGR00788       255 AKPLIFIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR---------LLFGVT  324 (468)
T ss_pred             HHHHHHHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH---------HHHHHH
Confidence            876665555 222211111110 122345899999999999999999999998888888887766         334444


Q ss_pred             HHHHHHHHHhhc----c------CchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHH
Q 009757          406 FIAPGIALIGLT----A------AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGT  474 (526)
Q Consensus       406 ~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~  474 (526)
                      .++..+..+...    .      .+..+......++.....+........++.+..| +.+|+.+++.+++.++|..+++
T Consensus       325 ~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~  404 (468)
T TIGR00788       325 TLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSG  404 (468)
T ss_pred             HHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHH
Confidence            444443332211    0      0122222222233333333444444555555655 7999999999999999999999


Q ss_pred             HHHhhhccccc----hhHHHHHHHHHHHH
Q 009757          475 VGAGFFVELVG----SFQGFLLLTSLLYF  499 (526)
Q Consensus       475 ~~~g~l~~~~g----~~~~~~~~~~~~~~  499 (526)
                      .++|.+.++.|    ++...+....++.+
T Consensus       405 ~~gg~l~~~~g~~~~~~~~~~~~i~i~~~  433 (468)
T TIGR00788       405 FLGVLLMETIGITCDNSNNLWLLILGHSL  433 (468)
T ss_pred             HHHHHHHHHcCCCcccccchHHHHHHHHH
Confidence            99999998876    24444444333333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.90  E-value=4.2e-21  Score=180.99  Aligned_cols=277  Identities=12%  Similarity=0.064  Sum_probs=197.4

Q ss_pred             cchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhh---------------
Q 009757          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ---------------  251 (526)
Q Consensus       187 ~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~---------------  251 (526)
                      .+|+.++++-++.|.|.+...+..+.++++..+++++++.+++.+..+++|.+++|.+++.+...               
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~   87 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE   87 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence            78999999999999999999999999999999999999999999999999999999999988732               


Q ss_pred             -cCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHH
Q 009757          252 -AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII  330 (526)
Q Consensus       252 -~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (526)
                       .+|+++|++.+++.++..+++.+. + .|+.+++.+  ++             ..+ ++.   ...+..+++|.++...
T Consensus        88 ~~~~~~~yl~ia~~~~~~~i~~~~~-~-~p~~~~~~~--~~-------------~~~-~~~---~~~~~~~~~~~~~l~~  146 (310)
T TIGR01272        88 AAKVHTPYLLLAGALAVLAIIFAFL-P-LPELQEADV--AR-------------VSS-GDT---TQKTSAFQFTHLVLGA  146 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc-c-CCCCCcccc--cc-------------ccc-ccc---cchhhHHhhHHHHHHH
Confidence             469999997777655555443332 1 111111000  00             000 000   1122467788888888


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH--hcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHH
Q 009757          331 VANAMHSWGFFVILSWMPIYFNFV--YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA  408 (526)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  408 (526)
                      +..+++.....++..|.+.|+++.  +|+++.+++...+....+.++|+++.+++.||+++++        . +.++..+
T Consensus       147 ~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~--------~-l~~~~~l  217 (310)
T TIGR01272       147 LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR--------Y-LAFNAFL  217 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH--------H-HHHHHHH
Confidence            888888889999999999999864  6899999999999999999999999999999999772        1 2222222


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhH
Q 009757          409 PGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQ  488 (526)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~  488 (526)
                      ..+..++....+.....+...+++ .+.+...|.......+..|++.+++.++. .+..+|++++|++.|.+.|..| ..
T Consensus       218 ~~~~~~l~~~~~~~~~~~~~~l~g-~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~  294 (310)
T TIGR01272       218 AVLLSIGAALTHGYVAMWFVLALG-LFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQ  294 (310)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-ch
Confidence            222222222222232223233333 33444455555555565666667777775 6778999999999999999887 66


Q ss_pred             HHHHHHHH
Q 009757          489 GFLLLTSL  496 (526)
Q Consensus       489 ~~~~~~~~  496 (526)
                      ..+++...
T Consensus       295 ~a~~v~~~  302 (310)
T TIGR01272       295 LAFALPVP  302 (310)
T ss_pred             HHHHHHHH
Confidence            66664333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.90  E-value=5.8e-21  Score=192.04  Aligned_cols=354  Identities=11%  Similarity=-0.005  Sum_probs=229.4

Q ss_pred             HHHHHHhhhhhhhhcc-hhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHh----HhcC-hHHHHHHHHHHHHHHh
Q 009757          106 LALALCNADRVVMSVA-IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD----YYGG-KIIMAWGVALWSLATF  179 (526)
Q Consensus       106 ~~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d----r~Gr-r~~l~~~~~~~~~~~~  179 (526)
                      ++.+...+......+. ...+.+.+|+++.++|.+..+..+..++..|+.|.++|    |+|| |+.++++.+..+++.+
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~   92 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLF   92 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHH
Confidence            3334344444444443 44556667999999999999999999999999999999    5698 5677778888888766


Q ss_pred             hhhhcc--cc--chHHHHHHHHHhhhhccchhhhhHHHHhhhc-CcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhh---
Q 009757          180 LTPWAA--DT--SLLALLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ---  251 (526)
Q Consensus       180 ~~~~~~--~~--~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~---  251 (526)
                      ++...+  .+  .++.+++..++.+++.....+...++..|.. ++++|.+..++...+.++|..+++.+...+.+.   
T Consensus        93 llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~  172 (473)
T PRK10429         93 LLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG  172 (473)
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            654431  01  1345566667778888888888999999998 589999999997887888767666655443322   


Q ss_pred             ----cCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHH
Q 009757          252 ----AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW  327 (526)
Q Consensus       252 ----~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (526)
                          .+|+....+.+++.++..+..++..+|.+......                  .+++++.+.++.++.+++||.++
T Consensus       173 ~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~------------------~~~~~~~~~~~~~~~~~~n~~~~  234 (473)
T PRK10429        173 GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQV------------------SAEGSHLTLKDIVALIYKNDQLS  234 (473)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccc------------------cccccCCCHHHHHHHHhcCHHHH
Confidence                24666666666666655555555455543211100                  01111223344566677899888


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHH
Q 009757          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (526)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (526)
                      .+++..++..........+.+.|.+...+ +....+.+.....++.+++.++.+++.||+|+|+       .......+.
T Consensus       235 ~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~-------~~~~~~~~~  306 (473)
T PRK10429        235 CLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI-------LWAGASIFP  306 (473)
T ss_pred             HHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-------HHHHHHHHH
Confidence            88888887777777776777766665433 4555666767767888999999999999999882       222122111


Q ss_pred             HHH-HHHHhh--ccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc--------cchhhHHHHHHHHHhHHHHHHHHH
Q 009757          408 APG-IALIGL--TAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVG  476 (526)
Q Consensus       408 ~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~lg~~~~~~~  476 (526)
                      +.+ +.+...  ....+.+..++..++.....+........+..|..+        +..|..+|....+..++..+++.+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i  386 (473)
T PRK10429        307 VLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF  386 (473)
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence            111 111111  122333333333333323333444555556666533        245669999999999999999999


Q ss_pred             Hhhhccccc
Q 009757          477 AGFFVELVG  485 (526)
Q Consensus       477 ~g~l~~~~g  485 (526)
                      .|++.+..|
T Consensus       387 ~g~~l~~~G  395 (473)
T PRK10429        387 IGVVLGLIG  395 (473)
T ss_pred             HHHHHHHcC
Confidence            999988665

>PRK09848 glucuronide transporter; Provisional

Probab=99.90  E-value=6.9e-21  Score=190.69  Aligned_cols=347  Identities=12%  Similarity=0.045  Sum_probs=211.2

Q ss_pred             HHHHHHhhhhhhhhc-chhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHh----cChHH-HHHHHHHHHHHHh
Q 009757          106 LALALCNADRVVMSV-AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY----GGKII-MAWGVALWSLATF  179 (526)
Q Consensus       106 ~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~----Grr~~-l~~~~~~~~~~~~  179 (526)
                      ++.+..........+ ..+++.+.+|++..++|.+.++..+..++..++.|+++||.    ||||. ++++.+...+..+
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            333333333333333 34566677899999999999999999999999999999996    76664 4556555554444


Q ss_pred             hhhhcc---cc--chHHHHHHHHHhhhhccchhhhhHHHHhhhcC-cchhhHHHHHHHhhhh-----hHHHHHHHHHHHH
Q 009757          180 LTPWAA---DT--SLLALLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFT-----SGNAIGLVLSPIL  248 (526)
Q Consensus       180 ~~~~~~---~~--~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~-----~G~~ig~~l~~~l  248 (526)
                      +....+   .+  ..+.+++..++.+++.+...+...++..+..+ +++|.+..++-..+.+     ++..++|.+++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848         95 LVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            322111   01  22334555667788888888777787777664 4678887776654433     4444555554432


Q ss_pred             Hhhc--CchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchH
Q 009757          249 MSQA--GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPT  326 (526)
Q Consensus       249 ~~~~--gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (526)
                      ....  +|.....+.+++.++..++.....+|+++++                        .++......++.++|||.+
T Consensus       175 g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~------------------------~~~~~~~~~~~~l~~n~~f  230 (448)
T PRK09848        175 PEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRI------------------------VAQPSLKISLQTLKRNRPL  230 (448)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCC------------------------ccCCCHHHHHHHHhCCchH
Confidence            1110  1211122233333333333333333332111                        0111233457789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHH
Q 009757          327 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF  406 (526)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  406 (526)
                      +...+..++...+........|.|+++.+|.+....++......++.+++.++.+++.||+++|+         ....+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~---------~~~~g~  301 (448)
T PRK09848        231 FMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN---------TFLIGA  301 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH---------HHHHHH
Confidence            99888888888888888888888888888877665555555545677888999999999999872         222333


Q ss_pred             HHHHHHHHh--hccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc--------cchhhHHHHHHHHHhHHHHHHHHH
Q 009757          407 IAPGIALIG--LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVG  476 (526)
Q Consensus       407 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~lg~~~~~~~  476 (526)
                      ++..+..+.  +....+.+......++.....+...+.......+..+        ++.|..+|+.+....+|..+++.+
T Consensus       302 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i  381 (448)
T PRK09848        302 LLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSI  381 (448)
T ss_pred             HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHH
Confidence            332222222  2222233333332322222233334445555555544        245999999999999999999999


Q ss_pred             Hhhhccccc
Q 009757          477 AGFFVELVG  485 (526)
Q Consensus       477 ~g~l~~~~g  485 (526)
                      .|.+.+..|
T Consensus       382 ~g~~l~~~G  390 (448)
T PRK09848        382 PAFILGLSG  390 (448)
T ss_pred             HHHHHHHcC
Confidence            999887655

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.88  E-value=6.1e-21  Score=189.78  Aligned_cols=335  Identities=18%  Similarity=0.190  Sum_probs=249.3

Q ss_pred             cchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHh----HhcChH-HHHHHHHHHHHHHhhhhhc-c-c----cc
Q 009757          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD----YYGGKI-IMAWGVALWSLATFLTPWA-A-D----TS  188 (526)
Q Consensus       120 ~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d----r~Grr~-~l~~~~~~~~~~~~~~~~~-~-~----~~  188 (526)
                      ...+.+.+.+|+++..+|.+..+..+..++..|+.|.++|    |+|||| .++++....+++.+++... + .    ..
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            3456677778999999999999999999999999999999    899765 5667888888887776654 1 0    12


Q ss_pred             hHHHHHHHHHhhhhccchhhhhHHHHhhhcC-cchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-------CchhHHHH
Q 009757          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-------GIFGPFVI  260 (526)
Q Consensus       189 ~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~-------gw~~~f~~  260 (526)
                      ...+++..++..++.........++..|..+ +++|.+..++-..+..+|.++...+.+.+.+..       +|++..++
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            3345777777799999999999999999997 578999999999999999877777766665422       58888888


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHH
Q 009757          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (526)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (526)
                      .+++.++..++..+..+|.+++.                     ++++++.+..+.++.+++||.++.+.+..++...+.
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~~---------------------~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~  241 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVEV---------------------TEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAF  241 (428)
T ss_pred             HHHHHHHHhhhhhheeeeccccc---------------------cccccccccccchhhhcccchHHHHHHHHHHHHhhh
Confidence            88888888777777777621111                     222333445667889999999999999999988888


Q ss_pred             HHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccC-
Q 009757          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA-  419 (526)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  419 (526)
                      .......+.|.++..|.+ ...+.+.....++..++.++.+++.||+|+|+.         ...+..+.++..+.+... 
T Consensus       242 ~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~---------~~~~~~~~~~~~~~~~~~~  311 (428)
T PF13347_consen  242 ALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV---------YIIGLLLAALGFLLLFFLG  311 (428)
T ss_pred             hhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee---------hhhhHHHHHHHHHHHHHHH
Confidence            888888999999987776 566777778889999999999999999999832         222223222222222222 


Q ss_pred             -chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc--------cchhhHHHHHHHHHhHHHHHHHHHHhhhccccc
Q 009757          420 -KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (526)
Q Consensus       420 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g  485 (526)
                       ++.+...+..++.....+.......+...|+.+        +..|..+|+.+....++..+++.+.|.+.+..|
T Consensus       312 ~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  312 PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence             345544444444443344444555555555543        346999999999999999999999999987665

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.88  E-value=7.9e-20  Score=169.14  Aligned_cols=355  Identities=14%  Similarity=0.080  Sum_probs=261.2

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhHHHhHhcChH-HHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHhhhhccchhhhh
Q 009757          133 RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI-IMAWGVALWSLATFLTPWAAD-TSLLALLAMRAVVGLAEGVALPAM  210 (526)
Q Consensus       133 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~Gig~g~~~~~~  210 (526)
                      .+..|...++..+..++.+|+.|.++|+.|+|| .+-....+..++.++..+..+ ..++..++...+..++.....+..
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            345688888999999999999999999999665 555555666666666777643 245556667888899999999999


Q ss_pred             HHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHH------------------hhcCchhHHHHHHHHHHHHHHHH
Q 009757          211 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM------------------SQAGIFGPFVIFGLSGFLWVLVW  272 (526)
Q Consensus       211 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~------------------~~~gw~~~f~~~~~~~~~~~~~~  272 (526)
                      .+++.+..++++-++..++-.....+|+.+--+..-...                  +...-|..+.+.++..++..+..
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            999999999999899888888888888877666542221                  12246778888888888888888


Q ss_pred             HhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009757          273 LSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFN  352 (526)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (526)
                      ++..++.++......+.-.+.                -++.+.++++..+++.+....+..+++.-+.+++......|..
T Consensus       217 ~~~v~~~~~~~~~~~~~l~~g----------------~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~  280 (438)
T COG2270         217 ILNVHDAEKISSPPPTALRNG----------------FKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGA  280 (438)
T ss_pred             HhcccccccccccchHHHHHH----------------HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            887777664321111100000                1112346778888899999999999999999999999999999


Q ss_pred             HHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 009757          353 FVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLA  432 (526)
Q Consensus       353 ~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (526)
                      ..+|++..+..++.....+..++|.++.|++.||++.|+.        +.....+...+.+..+.........+..++++
T Consensus       281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~v--------l~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g  352 (438)
T COG2270         281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPV--------LMIGLVILSIAALYLIFLEGELDFWILGLLVG  352 (438)
T ss_pred             HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcee--------ehHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence            8899999999999999999999999999999999998832        22222222222333333333333334445555


Q ss_pred             HHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 009757          433 IGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTG  511 (526)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (526)
                      ...++.....-..+...++|++.++.+|+++..+..++.+||.+.+.+.+.+|+.+..+....++..++.+++...+.+
T Consensus       353 ~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         353 TSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            5555444444444455555579999999999999999999999999999999988888888888888887776655433

>PRK11462 putative transporter; Provisional

Probab=99.87  E-value=6.9e-19  Score=175.68  Aligned_cols=332  Identities=12%  Similarity=0.082  Sum_probs=217.9

Q ss_pred             chhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhH----hcChH-HHHHHHHHHHHHHhhhhhccccc----hHH
Q 009757          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKI-IMAWGVALWSLATFLTPWAADTS----LLA  191 (526)
Q Consensus       121 ~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~~~----~~~  191 (526)
                      ....+.+..|+++..+|.+..+.-+--++..|+.|.++||    +|||| .++++.+..+++.+++...+..+    +..
T Consensus        32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y  111 (460)
T PRK11462         32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIY  111 (460)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            3445667789999999999999999999999999999996    68764 56677778888777665442111    345


Q ss_pred             HHHHHHHhhhhccchhhhhHHHHhhhcC-cchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-------CchhHHHHHHH
Q 009757          192 LLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-------GIFGPFVIFGL  263 (526)
Q Consensus       192 l~~~r~l~Gig~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~-------gw~~~f~~~~~  263 (526)
                      +++..++..++.........++..|..+ +++|++..++...+..+|..+++.+...+.+..       +|+....+.++
T Consensus       112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~i  191 (460)
T PRK11462        112 AAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSV  191 (460)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence            6666777788888888888999999986 789999999999999999888888766555433       47777777777


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 009757          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (526)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (526)
                      +.+++.++.+...+|.++..+                        ++.+.++.++..++||.++.+....++........
T Consensus       192 i~~i~~~i~~~~~kE~~~~~~------------------------~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~  247 (460)
T PRK11462        192 VAFMMLAFCFFTTKERVEAPP------------------------TTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVR  247 (460)
T ss_pred             HHHHHHHHHHhcceeccCCCc------------------------cCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            666666555554444322110                        11123345678888998887776666666655555


Q ss_pred             HHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHH-HHHHHhhccCchh
Q 009757          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP-GIALIGLTAAKSP  422 (526)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  422 (526)
                      ......|.+...|. ....+.+.....++.+++.++++++.||+++|+       ........... .+.+... ...+.
T Consensus       248 ~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~-------~~~~~~~~~~~~~~~~~~~-~~~~~  318 (460)
T PRK11462        248 GGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT-------IFWWTNALLAVISLAMFFV-PMQAS  318 (460)
T ss_pred             HhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHh-chhHH
Confidence            55555555554443 334455666777888899999999999998872       22211111111 1111111 12222


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHhhcc--------cchhhHHHHHHHHHhHHHHHHHHHHhhhccccc
Q 009757          423 VMASAWLTLAIGMKSFSHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (526)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g  485 (526)
                      +......++.....+...+..+.+..|..+        +..|..++.......+|..+++.+.|.+.+..|
T Consensus       319 ~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G  389 (460)
T PRK11462        319 ITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG  389 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            222222222222223333444555555543        233666677778899999999999999887654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.87  E-value=4.5e-19  Score=169.76  Aligned_cols=352  Identities=16%  Similarity=0.129  Sum_probs=260.6

Q ss_pred             HHHHHHhhhhhhhhcch-hhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhH----hcC-hHHHHHHHHHHHHHHh
Q 009757          106 LALALCNADRVVMSVAI-VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGG-KIIMAWGVALWSLATF  179 (526)
Q Consensus       106 ~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Gr-r~~l~~~~~~~~~~~~  179 (526)
                      ++-+............+ -.+.+.+|+++..+|.+..+.-+--++..|+.|.++||    +|| |+.++++.+..++.+.
T Consensus        19 ~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~   98 (467)
T COG2211          19 LGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV   98 (467)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence            33344433333333333 34566789999999999999999999999999999996    576 4577788888888888


Q ss_pred             hhhhccc----cchHHHHHHHHHhhhhccchhhhhHHHHhhhcC-cchhhHHHHHHHhhhhhHHHHHHHHHHHHHh----
Q 009757          180 LTPWAAD----TSLLALLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMS----  250 (526)
Q Consensus       180 ~~~~~~~----~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~----  250 (526)
                      ++..+++    .+....++...+.+++.........++.+++.+ ++||.+..++-..+.++|..+...+...+..    
T Consensus        99 l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~  178 (467)
T COG2211          99 LLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG  178 (467)
T ss_pred             HHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8777731    245556777888999999888888899999885 6899999999999999998887777766654    


Q ss_pred             ---hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHH
Q 009757          251 ---QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW  327 (526)
Q Consensus       251 ---~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (526)
                         ..||+...++.+++.++..+.+++-.+|++.+...                   .++..+.+....+...++|+.++
T Consensus       179 ~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~-------------------~~~~~~~~~~~~~~~~~~Nrp~~  239 (467)
T COG2211         179 GDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQP-------------------TKTGVKLKLKDSFLLIFKNRPLL  239 (467)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCcccc-------------------CcccccccHHHHHHHHHccchHH
Confidence               34788888888888888888888877776543221                   11112233334555788999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHH
Q 009757          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (526)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (526)
                      ..++..++...+..........|.+..+|.+.............+.+++.++..++.+|+|+|+         +...+.+
T Consensus       240 ~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~---------~~~~~~~  310 (467)
T COG2211         240 LLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKK---------LFLIGLL  310 (467)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH---------HHHHHHH
Confidence            9998888888888888888888888888888888888888878888888999999999999992         2333333


Q ss_pred             HHHHHHHh--hccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc--------cchhhHHHHHHHHHhHHHHHHHHHH
Q 009757          408 APGIALIG--LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVGA  477 (526)
Q Consensus       408 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~lg~~~~~~~~  477 (526)
                      +..+....  +...++.++.++..++.....+...+..++++.|..+        +..|..+|....+..+|.+++..+.
T Consensus       311 ~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~  390 (467)
T COG2211         311 LLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP  390 (467)
T ss_pred             HHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            33333332  2223445555555555555566666777777766543        3468899999999999999999999


Q ss_pred             hhhccccc
Q 009757          478 GFFVELVG  485 (526)
Q Consensus       478 g~l~~~~g  485 (526)
                      |++.+..|
T Consensus       391 g~~L~~~G  398 (467)
T COG2211         391 GWILGAIG  398 (467)
T ss_pred             HHHHHHcC
Confidence            99988776

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.84  E-value=5.1e-18  Score=160.90  Aligned_cols=402  Identities=14%  Similarity=0.129  Sum_probs=247.6

Q ss_pred             HHHHHHHHHHhhhhhhh-hcchhhhhhhcC----CccchhhHHHHHHHHHHHHhhhhhhHHHhHh-cChHHHHHHHHHHH
Q 009757          102 SMLALALALCNADRVVM-SVAIVPLSLAHG----WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWS  175 (526)
Q Consensus       102 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~  175 (526)
                      ..++...+-..+..+.+ .+..-++..+++    +++++..-+.+.|..-..+..+++|+++||+ |+|+++++|.++++
T Consensus        24 ~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~  103 (498)
T COG3104          24 YLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMA  103 (498)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            33344444444444333 334455555555    9999999999999998899999999999997 99999999999999


Q ss_pred             HHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcc--hhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC
Q 009757          176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQT--ERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (526)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g  253 (526)
                      +|.++.+.....+...++++-.+.++|.|..-+...+++.|.+|++  +|...++++.++.++|++++|++.+++.+.+|
T Consensus       104 iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g  183 (498)
T COG3104         104 IGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG  183 (498)
T ss_pred             HHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC
Confidence            9999988871126778999999999999999999999999999854  47889999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhccCCCCCCC-----CCChhHHHH-----H---HHh------cccc-------------
Q 009757          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-----QISKYELEY-----I---LRE------KQKP-------------  301 (526)
Q Consensus       254 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----~---~~~------~~~~-------------  301 (526)
                      |+..|.+.++-..+.++..++..+.......     .....+...     .   ...      ..+.             
T Consensus       184 ~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~  263 (498)
T COG3104         184 WHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIA  263 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998877776666555432211110     011110000     0   000      0000             


Q ss_pred             --cccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCC----cchhhhHhhHhHHHHHH
Q 009757          302 --LLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHID----LRQASWFSAVPWSVMAF  375 (526)
Q Consensus       302 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s----~~~~~~~~~~~~~~~~i  375 (526)
                        ...+..+.++.. ..-++++   ....+.+...+++..+....+.+..|..+....+    ....++..+...+.-++
T Consensus       264 ~~~~~~~~~~~~~~-~er~r~~---~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii  339 (498)
T COG3104         264 IIYFAEAFRSPKVF-DERRRLL---AAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIIL  339 (498)
T ss_pred             HHHHHHHhccCccH-HHHHHHH---HHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHH
Confidence              000000000000 1111111   1222333333333333333444444544422111    23467778888888888


Q ss_pred             HHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc---cC-----chhHHHHHHHHHHHHHHhhhhhhHHHHH
Q 009757          376 TGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT---AA-----KSPVMASAWLTLAIGMKSFSHSGFLVNL  447 (526)
Q Consensus       376 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (526)
                      ..++..++..|.++++.......+..+...+..++..++...   ..     .+.++.+...++....-.+..+.-...+
T Consensus       340 ~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~  419 (498)
T COG3104         340 FSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMV  419 (498)
T ss_pred             HHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            999999999997766544444444444444444333333322   11     2344444444444444445555555555


Q ss_pred             Hhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhh------hccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          448 QEIAP-QYSGVLHGISNTAGTFAAILGTVGAGF------FVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       448 ~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      ....| ...+.+++........+..++..+.+.      ..+.. .....|..++...++..+..+..
T Consensus       420 t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~-~~~~~F~~~g~v~i~~~~~~~~~  486 (498)
T COG3104         420 TKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAF-IEGRVFGTIGVVAIVIGILLLLL  486 (498)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhh-hhhhhHHHHHHHHHHHHHHHHHh
Confidence            55555 578888888777777777777666663      22222 25566777766666555544433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.84  E-value=6e-19  Score=169.21  Aligned_cols=392  Identities=14%  Similarity=0.141  Sum_probs=250.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhh--cCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcC-hHHHHHHH
Q 009757           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLA--HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMAWGV  171 (526)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l~~~~  171 (526)
                      +.+|+.+.+..+..++.....+.+.+..-++.++  .+.+.+..|++.++..++.+++++..|++..|.+. |+.++.+.
T Consensus        30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~  109 (488)
T KOG2325|consen   30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF  109 (488)
T ss_pred             CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence            4567888888888898888888777776555555  77888899999999999999999999999999997 88899999


Q ss_pred             HHHHHHHhhh-hhcc--ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 009757          172 ALWSLATFLT-PWAA--DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (526)
Q Consensus       172 ~~~~~~~~~~-~~~~--~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l  248 (526)
                      ++..++.+++ ++..  +..-+.++++|++.|+|.|. .....+|+++....++|.++++....+..+|.++||.++..+
T Consensus       110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence            9999999987 4332  23678899999999999877 667789999988889999999999999999999999988776


Q ss_pred             Hhh--cC-----------chhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCc
Q 009757          249 MSQ--AG-----------IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIP  315 (526)
Q Consensus       249 ~~~--~g-----------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (526)
                      ..-  -|           +..+-|+.+++.++..+...+..+|.++...+.+.+..+..    .     .++++.+..+.
T Consensus       189 ~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~  259 (488)
T KOG2325|consen  189 TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEE----K-----SDIEKVKKPKL  259 (488)
T ss_pred             hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhh----c-----cchhhhccCCh
Confidence            531  11           33466778888887777777777776554432211110000    0     00000111111


Q ss_pred             hHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHH-HHH-HHHHHHHHHHHhhcCc
Q 009757          316 PFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMA-FTG-YLGGLLSDMLIQRGTS  393 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~-i~~-~~~g~l~dr~~~~~~~  393 (526)
                      ++      +..+.+.+..+...+.+....+..+.+....++++..++....+....... +.. +......-|+++... 
T Consensus       260 d~------~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~-  332 (488)
T KOG2325|consen  260 DW------VAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDK-  332 (488)
T ss_pred             hH------HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-
Confidence            11      123445555566666666667777777777788887776555444332222 211 222223333333100 


Q ss_pred             cchhHHHHHHHHHHHHHHHH---HhhccCch---------------------------hHHHHHH--HHHHHHHHhhhhh
Q 009757          394 VTLTRKILQSIGFIAPGIAL---IGLTAAKS---------------------------PVMASAW--LTLAIGMKSFSHS  441 (526)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---------------------------~~~~~~~--~~~~~~~~~~~~~  441 (526)
                          |..+...++.......   ..+.+...                           .+..+..  ++++.++-.....
T Consensus       333 ----r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~  408 (488)
T KOG2325|consen  333 ----RRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTA  408 (488)
T ss_pred             ----ceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccch
Confidence                0111111111111111   11111110                           0011111  1111222212223


Q ss_pred             hHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          442 GFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       442 ~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      ....+..-+.|++++++.|++......+..++|.+...+....| ++..+.+..+..++...++...
T Consensus       409 ~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g-~~~v~~~~~~~~l~~~~l~~~~  474 (488)
T KOG2325|consen  409 LDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG-PRPVWIILLCLLLVVAALWIVF  474 (488)
T ss_pred             HHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC-ccHHHHHHHHHHHHHHHHHHHH
Confidence            44556666778999999999999999999999999999999988 7777777666666555554444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.83  E-value=5.7e-17  Score=150.99  Aligned_cols=355  Identities=15%  Similarity=0.143  Sum_probs=243.0

Q ss_pred             hhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhc-----ChHH-HHHHHHHHHHHHhhhhhcc----c-------c
Q 009757          125 LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-----GKII-MAWGVALWSLATFLTPWAA----D-------T  187 (526)
Q Consensus       125 l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G-----rr~~-l~~~~~~~~~~~~~~~~~~----~-------~  187 (526)
                      +..|++++....+.+.++..+... ..+.+|+.+|+.+     ||.. +..|.+....+..+.+++.    .       +
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            567899999999999998888765 5888999999998     7754 4455666555555444331    1       1


Q ss_pred             c-hH--HHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHH---H
Q 009757          188 S-LL--ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI---F  261 (526)
Q Consensus       188 ~-~~--~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~---~  261 (526)
                      . .+  ...+.-.+.|+|.+...++..+++.|..|+++|+++.++.....-+|.+++..+.+.+.+.+.-.-...+   .
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~  164 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV  164 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence            1 22  2445567889999999999999999999999999999999999999999999999998887663333222   2


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHH
Q 009757          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (526)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (526)
                      +++.++..++..+ ..|++.++..                  ...++++.+..+.++++..+|+...+....++...+++
T Consensus       165 a~i~~~l~~ia~w-g~E~r~~~~~------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~  225 (403)
T PF03209_consen  165 ALIALLLNLIALW-GQEPRRSRRA------------------AAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFF  225 (403)
T ss_pred             HHHHHHHHHHHHH-hcccCCcccc------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence            2222222222222 2222222111                  01233344455677888899999888888888888888


Q ss_pred             HHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHH-HHhhcCccchhHHHHHHHHHHHHHH---HHHhhc
Q 009757          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLTRKILQSIGFIAPGI---ALIGLT  417 (526)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  417 (526)
                      .-...+-+|--+++|++..+..-+......+..+|....+++..| .+++       +  ....+......   .+....
T Consensus       226 ~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~-------~--~a~~G~~~~~~~f~lii~a~  296 (403)
T PF03209_consen  226 MQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK-------R--TAALGCLLGALAFALIILAG  296 (403)
T ss_pred             hhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-------H--HHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999999988764 3332       1  11122222211   122223


Q ss_pred             cCchhHHHHHHHH-HHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhcccc----c-----hh
Q 009757          418 AAKSPVMASAWLT-LAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELV----G-----SF  487 (526)
Q Consensus       418 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~----g-----~~  487 (526)
                      ...+.+.+....+ ++++.+.+........+....+++.|..+|.....+.++..++..++|.+.|..    +     .|
T Consensus       297 ~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY  376 (403)
T PF03209_consen  297 PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAY  376 (403)
T ss_pred             hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHH
Confidence            3344555444444 444444444444445555555689999999999999999999999999988732    2     36


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 009757          488 QGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      ...|.+=++..++++++...+
T Consensus       377 ~~VF~lEa~ll~~a~~ll~~l  397 (403)
T PF03209_consen  377 GVVFALEAVLLLAALVLLGRL  397 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            666766666666666555444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.82  E-value=1.6e-18  Score=172.94  Aligned_cols=292  Identities=16%  Similarity=0.150  Sum_probs=229.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHH
Q 009757           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT  178 (526)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  178 (526)
                      ..+.++++..+...+....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|..|-|.+-+|.++++++.
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            44556667777777777888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcc------------------cc-----------------------------c--hH-HHHHHHHHhhhhccchhh
Q 009757          179 FLTPWAA------------------DT-----------------------------S--LL-ALLAMRAVVGLAEGVALP  208 (526)
Q Consensus       179 ~~~~~~~------------------~~-----------------------------~--~~-~l~~~r~l~Gig~g~~~~  208 (526)
                      +++++-.                  .+                             +  ++ .++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            9987630                  00                             0  23 567789999999999999


Q ss_pred             hhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc------------------C-chhHHHHHHHHHHHHH
Q 009757          209 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA------------------G-IFGPFVIFGLSGFLWV  269 (526)
Q Consensus       209 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~------------------g-w~~~f~~~~~~~~~~~  269 (526)
                      ...+|+-|...+++-...+|+......+|.++|.++++++...+                  | |..-|++.+.+.++..
T Consensus       257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999986521                  1 6667888888888888


Q ss_pred             HHHHhhccCCCCCCCCCChhHHHHHHHhcc-cccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHH
Q 009757          270 LVWLSATSSTPDRHPQISKYELEYILREKQ-KPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMP  348 (526)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (526)
                      +.++++.++.|+..++....+.+....+.. .+......++-++....++.+++||.+...++...+....+.++.+|+|
T Consensus       337 ~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlP  416 (735)
T KOG3626|consen  337 VPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLP  416 (735)
T ss_pred             HHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhH
Confidence            888888777665544311111111100000 0000000001123345667889999999999999999999999999999


Q ss_pred             HHHHHHhcCCcchhhhHhhHhHHH-HHHHHHHHHHHHHHHHhh
Q 009757          349 IYFNFVYHIDLRQASWFSAVPWSV-MAFTGYLGGLLSDMLIQR  390 (526)
Q Consensus       349 ~~~~~~~g~s~~~~~~~~~~~~~~-~~i~~~~~g~l~dr~~~~  390 (526)
                      -|++.++|.++..+..++....+. ..+|.+++|++.+|+.-+
T Consensus       417 KyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  417 KYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             HHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence            999999999999999998766654 577889999999988644

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.79  E-value=8.2e-21  Score=190.01  Aligned_cols=380  Identities=15%  Similarity=0.137  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhh
Q 009757          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (526)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~  181 (526)
                      +.+++..+...+........+..+.++|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++++++++++
T Consensus         6 ~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~   85 (539)
T PF03137_consen    6 VFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLF   85 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHH
Confidence            34445555556666677888999999999999999999999999999999999999999888899999999999999987


Q ss_pred             hhcc------------------------c------------------------cchHHHHHHHHHhhhhccchhhhhHHH
Q 009757          182 PWAA------------------------D------------------------TSLLALLAMRAVVGLAEGVALPAMNNM  213 (526)
Q Consensus       182 ~~~~------------------------~------------------------~~~~~l~~~r~l~Gig~g~~~~~~~~~  213 (526)
                      ++-.                        .                        .-++.++++.++.|+|....++...+|
T Consensus        86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY  165 (539)
T PF03137_consen   86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY  165 (539)
T ss_dssp             ------------------------------------------------------------------SSS-----------
T ss_pred             hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence            6531                        0                        013568889999999999999999999


Q ss_pred             HhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc---------------------C-chhHHHHHHHHHHHHHHH
Q 009757          214 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA---------------------G-IFGPFVIFGLSGFLWVLV  271 (526)
Q Consensus       214 i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~---------------------g-w~~~f~~~~~~~~~~~~~  271 (526)
                      +-|..++++-+..+|++.+...+|.++|.++++.+.+.+                     | |..-|++.+++.++..+.
T Consensus       166 iDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aip  245 (539)
T PF03137_consen  166 IDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIP  245 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998776421                     2 666777788887777777


Q ss_pred             HHhhccCCCCCCCCCChhHHHHHHH-hcccccccCC------CCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHH
Q 009757          272 WLSATSSTPDRHPQISKYELEYILR-EKQKPLLMGN------KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL  344 (526)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (526)
                      .+.+.++-|...+..++++.+.... +.......+.      ....++....++.+++||.+....+..........++.
T Consensus       246 l~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~  325 (539)
T PF03137_consen  246 LFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFA  325 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence            7777666665522111111110000 0000000000      12234456677889999999999999999999999999


Q ss_pred             HhHHHHHHHHhcCCcchhhhHhhHhHH-HHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHH--HHHhhc----
Q 009757          345 SWMPIYFNFVYHIDLRQASWFSAVPWS-VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI--ALIGLT----  417 (526)
Q Consensus       345 ~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----  417 (526)
                      ++.|-|++.+++.++.+++++.....+ +.++|.+++|++.+|++-+....   .+......++....  ..+.+.    
T Consensus       326 tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~---~~~~~v~~~v~~~~~~~~~~~~C~~~  402 (539)
T PF03137_consen  326 TFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGA---AKFCIVVSIVSVILYSPLFFLGCPNP  402 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHH---HHHHHHHHHHHHHHHHHHHeecCCCC
Confidence            999999999999999999998876665 56788899999999986542111   11111222211111  011110    


Q ss_pred             --------c---------------------------Cc---------hhHHHHHHHHHH-HHHHhhhhhhHHHHHHhhcc
Q 009757          418 --------A---------------------------AK---------SPVMASAWLTLA-IGMKSFSHSGFLVNLQEIAP  452 (526)
Q Consensus       418 --------~---------------------------~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  452 (526)
                              .                           ..         ....+.+..++. +..+....+........+.+
T Consensus       403 ~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~  482 (539)
T PF03137_consen  403 PIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPP  482 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCCh
Confidence                    0                           00         001111111222 22222333445555666677


Q ss_pred             cchhhHHHHHHHHHh-HHHHHHHHHHhhhcccc
Q 009757          453 QYSGVLHGISNTAGT-FAAILGTVGAGFFVELV  484 (526)
Q Consensus       453 ~~~g~~~g~~~~~~~-lg~~~~~~~~g~l~~~~  484 (526)
                      ++|+.+.|+...+.. +|.+-+|+++|.+.|..
T Consensus       483 ~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  483 EQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ---------------------------------
T ss_pred             hhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            899999999987766 77788999999999963

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.75  E-value=6.5e-16  Score=150.84  Aligned_cols=363  Identities=18%  Similarity=0.131  Sum_probs=248.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccc-hhhHHHHH----HHHHHHHhhhhhhHHHhHhcChHHHHHHHH
Q 009757           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRS-FSGIVQSS----FLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (526)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~-~~g~~~s~----~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (526)
                      +.......+-.+...+.........+.....++.+.. ..+.....    ..+...+.++..|.++||+|||..+.+..+
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~  100 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF  100 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence            4445555555555555555555556666655543322 22333333    367778899999999999999999999999


Q ss_pred             HHHHHHhhhhhccccchHHHHHHHHHhhhhc--cchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 009757          173 LWSLATFLTPWAADTSLLALLAMRAVVGLAE--GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (526)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~--g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~  250 (526)
                      ...+..+...+.  . +|.++    +.|+..  +.......++++|....++|....++.......+..++|.+++.+..
T Consensus       101 ~~~l~~~~~~~~--~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~  173 (463)
T KOG2816|consen  101 GTILPALCLLFQ--G-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK  173 (463)
T ss_pred             HHHHhHHHHHHH--H-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            999988888776  3 44444    444443  34567788999999999999999999999999999999999999999


Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHH
Q 009757          251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII  330 (526)
Q Consensus       251 ~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (526)
                      ..|.-..|.+.++..++..+..++..||+..++...+....+     ....  ........+..+..+..-.+|..+.++
T Consensus       174 ~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~r~~l~l~  246 (463)
T KOG2816|consen  174 FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRE-----LTPG--SLDSSHVADAFQSLTKVGPDRLLLLLL  246 (463)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccc-----cCCC--cccchhhhhhhhhhcccCCCccchHHH
Confidence            999999999999999888888888888875544332100000     0000  000000111111111222234455545


Q ss_pred             HHHHHHHHHHHHHHH-hHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHH-HHHHHHHhhcCccchhHHHHHHHHHHH
Q 009757          331 VANAMHSWGFFVILS-WMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG-LLSDMLIQRGTSVTLTRKILQSIGFIA  408 (526)
Q Consensus       331 ~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~~~  408 (526)
                      +..++......+-.. ..+.|++..+|++..+.+.+.+.......++.++.. .+...++.+         ..+..++..
T Consensus       247 l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~---------~~i~lGl~~  317 (463)
T KOG2816|consen  247 LVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK---------RLISLGLLS  317 (463)
T ss_pred             HHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hHhhHHHHH
Confidence            544444443332222 447788888999999999999999999999987777 666667766         356677777


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccc
Q 009757          409 PGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVEL  483 (526)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~  483 (526)
                      -.+..+.+.+....|..+....+........+...........++++|+++++...+..+...++|.+.+.+...
T Consensus       318 ~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  318 EFLQLLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             HHHHHHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            777777777777777766665554444434333444444455568999999999999999999999999988654

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.70  E-value=1.4e-14  Score=132.92  Aligned_cols=263  Identities=15%  Similarity=0.076  Sum_probs=181.9

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHH
Q 009757           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (526)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (526)
                      +.++..+.+-.+....++    ..+|..-.+.+++|.+..|++.+.........+...+.|.++||+|||+..++.+++.
T Consensus        34 ~Fqr~yl~vY~La~~aDW----LQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily  109 (354)
T PF05631_consen   34 RFQRKYLLVYLLAMAADW----LQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILY  109 (354)
T ss_pred             HHHHHHHHHHHHHHHHHH----hhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            334444444444444433    4555555666789999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhc-----CcchhhHHHHHHH-hhhhhHHHHHHHHHHHH
Q 009757          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWF-----PQTERARAVAIAM-GGFTSGNAIGLVLSPIL  248 (526)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~-----~~~~r~~~~~~~~-~~~~~G~~ig~~l~~~l  248 (526)
                      +++++.. ..  ++++.++++|++.|++......+-.+++..-.     |++..+..++... ...++-.+++.+++.++
T Consensus       110 ~~scl~k-~~--~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l  186 (354)
T PF05631_consen  110 SLSCLTK-HS--SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL  186 (354)
T ss_pred             HHHHHHH-hc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence            9998754 34  79999999999999999998888887664332     2233333333333 23334445555666666


Q ss_pred             HhhcCc--hhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchH
Q 009757          249 MSQAGI--FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPT  326 (526)
Q Consensus       249 ~~~~gw--~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (526)
                      .+..+.  ..+|....++.++..++.....+|...+.....                    +..+...+.++.+++||++
T Consensus       187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~--------------------~~~~~~~~a~~~i~~d~ri  246 (354)
T PF05631_consen  187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSS--------------------SLSGSFREAWRAILSDPRI  246 (354)
T ss_pred             HHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCccccc--------------------chHHHHHHHHHHHHcCchh
Confidence            665554  788988888777777766655555443221100                    0011122355678889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHH
Q 009757          327 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM  386 (526)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr  386 (526)
                      +.+.++..+.-...+.+.....+-++.  +-...-.|++++.+.++.++|+.+..++..+
T Consensus       247 l~LG~~qslFE~smy~FVflWtPaL~~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  247 LLLGLIQSLFEGSMYLFVFLWTPALDP--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             HHHHHHHHHHHHHHHHheeeeeceecC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999988888887766444444442  1123457899999889999998888766543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.68  E-value=7.5e-15  Score=144.74  Aligned_cols=378  Identities=15%  Similarity=0.094  Sum_probs=226.9

Q ss_pred             hcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhc-----ChHHHHHHHHHHHHHHhhhhhccc--cchHH
Q 009757          119 SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-----GKIIMAWGVALWSLATFLTPWAAD--TSLLA  191 (526)
Q Consensus       119 ~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G-----rr~~l~~~~~~~~~~~~~~~~~~~--~~~~~  191 (526)
                      ....|.+.+++|+++++...+.+...++..+ .++.|.++|.+.     ||+-++++.++.+++.+.++....  .+...
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            4456788899999999999999999988866 667799999872     556677777777666665555421  35666


Q ss_pred             HHHHHHHhhhhccchhhhhHHHHhhhcC--cchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 009757          192 LLAMRAVVGLAEGVALPAMNNMVARWFP--QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWV  269 (526)
Q Consensus       192 l~~~r~l~Gig~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~  269 (526)
                      ..++-++..+|.+....++.+++.|...  ++.|+...+.......+|.+++..++|.+.+..+++..|.+.+++..+..
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            6777788899999999999999999883  34478889999999999999999999999999999999999888877777


Q ss_pred             HHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHH-HHHHHHHHHHHHHHhHH
Q 009757          270 LVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIV-ANAMHSWGFFVILSWMP  348 (526)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  348 (526)
                      +..++..+|.+++... +.....   ++...    ......++....+++.++.|.+|...+ ..++.......-....-
T Consensus       169 ~~~~~~~~e~~~~~~~-~~~~~~---~~~~~----~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~f  240 (433)
T PF03092_consen  169 IVALFLLEERKVRPAD-EVFSFG---KEEVP----CLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSF  240 (433)
T ss_pred             HHHHHhhhhccccccc-hhhccc---ccccc----hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEE
Confidence            6666666652222111 000000   00000    000001122334556777777776665 22222221111101000


Q ss_pred             HHHHHHhc---CCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccC------
Q 009757          349 IYFNFVYH---IDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA------  419 (526)
Q Consensus       349 ~~~~~~~g---~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  419 (526)
                      .+..+..+   +++...+.+..+..++.++|..+..+...+..-        |+......++.....+.-+...      
T Consensus       241 y~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~--------R~~~~~t~~~~~~~~l~~~~lv~~~n~~  312 (433)
T PF03092_consen  241 YFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSW--------RRIFVVTTLVSVLASLFDLLLVTRWNLD  312 (433)
T ss_pred             EEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhcccEEEEEEEeee
Confidence            11223344   676666666655555555554444433322222        2233333322222222111110      


Q ss_pred             ---chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccc-------hhH
Q 009757          420 ---KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG-------SFQ  488 (526)
Q Consensus       420 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g-------~~~  488 (526)
                         +..+..+.--++.-....+..........+..| ...|+.+++..++.++|..++..++..+.+..|       +..
T Consensus       313 ~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~  392 (433)
T PF03092_consen  313 LGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLW  392 (433)
T ss_pred             eCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchH
Confidence               111222222233333334444445555666666 599999999999999999999999999887665       134


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCce
Q 009757          489 GFLLLTSLLYFLSALFYIIFSTGER  513 (526)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~  513 (526)
                      ...+++.++.++.+.+..++++.++
T Consensus       393 ~lili~~~~~ll~l~ll~lLp~~~~  417 (433)
T PF03092_consen  393 LLILICSVIQLLPLPLLFLLPPQKR  417 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCch
Confidence            4455555555555555545555444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.64  E-value=2e-15  Score=125.33  Aligned_cols=138  Identities=21%  Similarity=0.367  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhc
Q 009757          139 VQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWF  218 (526)
Q Consensus       139 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~  218 (526)
                      +.+.+.++..++.++.|++.||+|||+.+..+..+..++.+...+.  ++++.+.+.+++.|++.+...+....++.|.+
T Consensus         3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   80 (141)
T TIGR00880         3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--SNITVLIIARFLQGFGAAFALVAGAALIADIY   80 (141)
T ss_pred             EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence            3456678889999999999999999999999999999998888888  89999999999999999999999999999999


Q ss_pred             CcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhccC
Q 009757          219 PQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSS  278 (526)
Q Consensus       219 ~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~  278 (526)
                      |+++|++..++......+|..+++.+.+.+.+..+|++.+++.++..++..+..++..||
T Consensus        81 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        81 PPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999999999998999999999888877776666665543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.64  E-value=6.5e-15  Score=145.62  Aligned_cols=160  Identities=14%  Similarity=0.083  Sum_probs=134.5

Q ss_pred             cchhhhhhhcCCcc--------chhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccc--cch
Q 009757          120 VAIVPLSLAHGWSR--------SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD--TSL  189 (526)
Q Consensus       120 ~~~~~l~~~~~~s~--------~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~  189 (526)
                      ...+...++.|.++        +..+...++..++..++.++.|++.||+|+|+++.++.++.+++..+......  .++
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~  308 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY  308 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            44455566666543        56799999999999999999999999999999999999999888776665311  134


Q ss_pred             HHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHH-hhhhhHHHHHHHHHHHHHhh------cCchhHHHHHH
Q 009757          190 LALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQ------AGIFGPFVIFG  262 (526)
Q Consensus       190 ~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~l~~~l~~~------~gw~~~f~~~~  262 (526)
                      +.+++.+++.|++.+...+....++.|++|+++|+++.++.+ ...++|..+||+++|++.++      +||+..|++.+
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~  388 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA  388 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            667788999999999888999999999999999999999997 67889999999999999987      46999999998


Q ss_pred             HHHHHHHHHHHhhccCC
Q 009757          263 LSGFLWVLVWLSATSST  279 (526)
Q Consensus       263 ~~~~~~~~~~~~~~~~~  279 (526)
                      ++.++..++.+++.+|+
T Consensus       389 ~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       389 GYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHhCCc
Confidence            88888888777777765

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.60  E-value=9.4e-14  Score=137.29  Aligned_cols=157  Identities=18%  Similarity=0.174  Sum_probs=132.6

Q ss_pred             cchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHh
Q 009757          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVV  199 (526)
Q Consensus       120 ~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  199 (526)
                      ..++.+.++.|.  .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.  ++.+.+++..++.
T Consensus       237 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~  312 (399)
T PRK05122        237 TFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA--PSPWMALIGAALT  312 (399)
T ss_pred             HHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHH
Confidence            344555555565  345677788889999999999999999999999999988888888887777  7888888899999


Q ss_pred             hhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 009757          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (526)
Q Consensus       200 Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~  279 (526)
                      |++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+..||+..|++.+++.++..+..++..+++
T Consensus       313 G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (399)
T PRK05122        313 GFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRA  392 (399)
T ss_pred             HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999888888888889999999999999999999999999999999999999999999998888777766666554443


Q ss_pred             C
Q 009757          280 P  280 (526)
Q Consensus       280 ~  280 (526)
                      +
T Consensus       393 ~  393 (399)
T PRK05122        393 P  393 (399)
T ss_pred             c
Confidence            3

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.59  E-value=2.3e-14  Score=140.42  Aligned_cols=149  Identities=15%  Similarity=0.077  Sum_probs=128.2

Q ss_pred             cchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHh
Q 009757          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVV  199 (526)
Q Consensus       120 ~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  199 (526)
                      ...+.+.++++.++.+.+++.+.+.++..++.++.|++.||+|||+.+.++.++.+++.++..+....+...++...++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (377)
T TIGR00890       226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV  305 (377)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence            34555677889999899999999999999999999999999999999999999998888877776211233455667888


Q ss_pred             hhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 009757          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW  268 (526)
Q Consensus       200 Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~  268 (526)
                      |++.+...+....++.|.+|+++|+++.++......+|..++|.+.+.+.+..||+..|++.+++.++.
T Consensus       306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            888888888888999999999999999999999999999999999999999999999999888776654

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.59  E-value=1.3e-11  Score=116.84  Aligned_cols=343  Identities=13%  Similarity=0.075  Sum_probs=229.5

Q ss_pred             hcchhhhhhh-cCCccchhh-HHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Q 009757          119 SVAIVPLSLA-HGWSRSFSG-IVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (526)
Q Consensus       119 ~~~~~~l~~~-~~~s~~~~g-~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  196 (526)
                      +...|.+.+. .|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.  ++.+.+-+..
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~--~sv~~mq~~q  101 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG--TSVLAMQLMQ  101 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--CcHHHHHHHH
Confidence            3445556655 788888764 55556667778888899999999999999999999999999999898  9999999999


Q ss_pred             HHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhh--cCchhHHHHHHHHHHHHHHHHHh
Q 009757          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--AGIFGPFVIFGLSGFLWVLVWLS  274 (526)
Q Consensus       197 ~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~--~gw~~~f~~~~~~~~~~~~~~~~  274 (526)
                      ++.|++.+. ..+..+++-...|+++-.++.+...+..-+|..++.++|..+...  .+++...++......+..+..++
T Consensus       102 ~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f  180 (412)
T PF01770_consen  102 FFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF  180 (412)
T ss_pred             HHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999877 778889999999999999999999999999999999999988763  34555555554444444444444


Q ss_pred             hccCCCCCC---CCC-ChhHHHHHHHhc-cccccc------CCCCCCC-------CCCchHHHHHcCchHHHHHHHHHHH
Q 009757          275 ATSSTPDRH---PQI-SKYELEYILREK-QKPLLM------GNKHKPA-------TVIPPFRRLLSKMPTWSIIVANAMH  336 (526)
Q Consensus       275 ~~~~~~~~~---~~~-~~~~~~~~~~~~-~~~~~~------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  336 (526)
                       .|..++..   +.. .+++.+....+. .+....      ..+..+.       ..++.+++..++|.++...+-+.+.
T Consensus       181 -LP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~a  259 (412)
T PF01770_consen  181 -LPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFA  259 (412)
T ss_pred             -cCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence             44433221   110 000000000000 000000      0000001       1123455666789998888888888


Q ss_pred             HHHHHHHHHhHHHHHHHH--hcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHH
Q 009757          337 SWGFFVILSWMPIYFNFV--YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI  414 (526)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (526)
                      ..+++.+.+|......+.  -+-....-|.+-+...+.+.++.+..|++-.++.+.       ....+....+..+..++
T Consensus       260 tcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~-------~~l~l~~~S~l~a~~L~  332 (412)
T PF01770_consen  260 TCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW-------GELALGVFSLLQAGLLF  332 (412)
T ss_pred             HhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH-------HHHHHHHHHHHHHHHHH
Confidence            889999988888888774  133344467788888888888889999985555544       22444445555566666


Q ss_pred             hhccCchhHHHHHHHHHHHHHHhhhhhh-HHHHHHhhcccchhhHHHHHHHHHhHHHHH
Q 009757          415 GLTAAKSPVMASAWLTLAIGMKSFSHSG-FLVNLQEIAPQYSGVLHGISNTAGTFAAIL  472 (526)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~  472 (526)
                      .+...++.|...+..++..+...+..+. ..-+...+..+.-|-.+|+.+.+..+-..+
T Consensus       333 lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti  391 (412)
T PF01770_consen  333 LMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTI  391 (412)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence            6677778887777666555544443333 344444555577788888877665544443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.58  E-value=2.3e-14  Score=142.47  Aligned_cols=150  Identities=13%  Similarity=0.097  Sum_probs=130.7

Q ss_pred             hcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchh
Q 009757          128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVAL  207 (526)
Q Consensus       128 ~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~  207 (526)
                      +.+.+..+.|++.++..++..++.+++|++.||+|+|+.+.++.++.+++.++.++.  ++.+.+++.+++.|++.+...
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~l~g~~~~~~~  333 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA--TGPLEVSILKLLHAFEVPFLL  333 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHH
Confidence            346677788999999999999999999999999999999999999999988888888  889999999999999988888


Q ss_pred             hhhHHHHhhhcCcchhhHHHHH-HHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 009757          208 PAMNNMVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (526)
Q Consensus       208 ~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~  279 (526)
                      +....++.+.+|++.|+...+. ++....+|.++++.+.|++.+..||+..|++.+++.++..++.++..+++
T Consensus       334 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        334 VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8888999999999988887665 67778899999999999999999999999998888777666665554443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.56  E-value=2.1e-13  Score=134.22  Aligned_cols=153  Identities=11%  Similarity=0.014  Sum_probs=126.3

Q ss_pred             cchhh-hhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHH
Q 009757          120 VAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAV  198 (526)
Q Consensus       120 ~~~~~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  198 (526)
                      ...|. +.+++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...+......+.  ++.+.+++.+++
T Consensus       237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l  314 (393)
T PRK15011        237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA--HSPAILLGLQLL  314 (393)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHH
Confidence            34554 456789999999999888888888899999999999999998887776666555555555  677888888999


Q ss_pred             hhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhh
Q 009757          199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (526)
Q Consensus       199 ~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  275 (526)
                      .+++.|...+....+..|.+| ++|+++.++++...++|..+++.+++.+.+.+||+..|++.+++.++..+..++.
T Consensus       315 ~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        315 NAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            988888777777888899987 5699999999999999999999999999999999999998887777766555543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.56  E-value=2.1e-13  Score=133.71  Aligned_cols=153  Identities=12%  Similarity=0.022  Sum_probs=134.9

Q ss_pred             hhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHH
Q 009757          115 RVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLA  194 (526)
Q Consensus       115 ~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  194 (526)
                      ...+....|.+.+++|.++.++|++.+...++..+..++.|++.||+|+|+.+.++.++..+..++.++.  ++.+.+++
T Consensus       221 ~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~  298 (382)
T TIGR00902       221 HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI--EAFPLIFL  298 (382)
T ss_pred             HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH--hhHHHHHH
Confidence            3344445566667899999999999999999999999999999999999999999999999999999888  99999999


Q ss_pred             HHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHH-hhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 009757          195 MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLV  271 (526)
Q Consensus       195 ~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~  271 (526)
                      .++++|+..+...+....++.+. |+++|++..++++ ...++|..+|+.++|++.+++|+ ..|++.+++.++..++
T Consensus       299 ~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       299 LQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            99999999999999999999998 9999999999986 57789999999999999999986 6677777776655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.56  E-value=1.4e-13  Score=136.35  Aligned_cols=157  Identities=19%  Similarity=0.133  Sum_probs=130.5

Q ss_pred             hhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Q 009757          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (526)
Q Consensus       117 ~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  196 (526)
                      ......|.+.++.|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.+...++.++..+.  ++.+.+.+..
T Consensus       238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  315 (406)
T PRK11551        238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA--PSFAGMLLAG  315 (406)
T ss_pred             HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHH
Confidence            33445677788889999999999999999999999999999999999999988777777777766666  7777788888


Q ss_pred             HHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHhh
Q 009757          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVWLSA  275 (526)
Q Consensus       197 ~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~  275 (526)
                      ++.|++.+...+...+++.|.+|+++|+++.++.+....+|..+||.+++.+.++.+ |...+++.+...++..+..+..
T Consensus       316 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        316 FAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            889998888888999999999999999999999999999999999999999988654 5556666555555544444443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.55  E-value=2.5e-13  Score=140.59  Aligned_cols=138  Identities=17%  Similarity=0.180  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhh
Q 009757          138 IVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARW  217 (526)
Q Consensus       138 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~  217 (526)
                      +...+..++..++.++.|+++||+|||++++++.++.+++.++.++.  ++.+.+++.+++.|++.++.++...++++|+
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~--~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG--NSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556678889999999999999999999999999999999998888  7778888888999998888899999999999


Q ss_pred             cCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 009757          218 FPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (526)
Q Consensus       218 ~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~  279 (526)
                      +|.++|++++|+..+...+|.++||.+++.+.+. +...+|++.+++.++..++.++ +||+
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET  736 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDT  736 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence            9999999999999999999999999999988764 4567788877777665555554 3554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK12382 putative transporter; Provisional

Probab=99.55  E-value=3.3e-13  Score=133.06  Aligned_cols=153  Identities=18%  Similarity=0.222  Sum_probs=131.2

Q ss_pred             hcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHH
Q 009757          119 SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAV  198 (526)
Q Consensus       119 ~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  198 (526)
                      ....|.+.++.+.+  +.++..+.+.++..+++++.|++.||+|+|+.+.++..+.+++.++..+.  ++.+.++++.++
T Consensus       236 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l  311 (392)
T PRK12382        236 GTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA--PTAWVALAGAAL  311 (392)
T ss_pred             HHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc--ccHHHHHHHHHH
Confidence            33445555666654  35666777888889999999999999999999999999998888887777  788888889999


Q ss_pred             hhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhh
Q 009757          199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (526)
Q Consensus       199 ~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  275 (526)
                      .|++.+...+...+.+.+.+|+++|+++.++++....+|..+||.+.+.+.++.||+..|.+.+++.++..++.++.
T Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            99999988888888999999999999999999999999999999999999999999999999988877766665544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.54  E-value=8.9e-13  Score=133.53  Aligned_cols=168  Identities=13%  Similarity=0.117  Sum_probs=124.1

Q ss_pred             hhhhhhcchhhhh-hhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhh-hhhccccchHH
Q 009757          114 DRVVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL-TPWAADTSLLA  191 (526)
Q Consensus       114 ~~~~~~~~~~~l~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~-~~~~~~~~~~~  191 (526)
                      ..+.....+|.+. +++|.+..+.++..+...++..++.++.|+++||+|||+.+.++.++..++... ......++...
T Consensus       265 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (490)
T PRK10642        265 TYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGL  344 (490)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            3334444566655 567988888888888889999999999999999999999988887654433322 22211156777


Q ss_pred             HHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CchhHHHHHHHHHHHHHH
Q 009757          192 LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFGPFVIFGLSGFLWVL  270 (526)
Q Consensus       192 l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~-gw~~~f~~~~~~~~~~~~  270 (526)
                      +++++++.|++.+........++.|.+|++.|+.++++......++..++|.+.+++.+.. +|+.++++..+..++..+
T Consensus       345 ~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~  424 (490)
T PRK10642        345 IFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI  424 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence            8889999998877777778888999999999999999855555666788899988887754 478777766666655555


Q ss_pred             HHHhhccCCCCC
Q 009757          271 VWLSATSSTPDR  282 (526)
Q Consensus       271 ~~~~~~~~~~~~  282 (526)
                      ..+ +.||+|..
T Consensus       425 ~~~-~~pes~~~  435 (490)
T PRK10642        425 TGV-TMKETANR  435 (490)
T ss_pred             HHH-HhccccCC
Confidence            444 44777654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.53  E-value=2.7e-13  Score=134.70  Aligned_cols=161  Identities=14%  Similarity=0.064  Sum_probs=139.0

Q ss_pred             hhcchhhhhhh-cCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Q 009757          118 MSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (526)
Q Consensus       118 ~~~~~~~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  196 (526)
                      +....|.+.++ +|.++.+.|++.+...++..++.++.|++.||.++++.+..+.++.+++.++..+.  ++.+.+.++.
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~  319 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM--PMWILAVLCL  319 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc--chHHHHHHHH
Confidence            34456666666 89999999999999999999999999999999888888888888888888877777  7888888889


Q ss_pred             HHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhc
Q 009757          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (526)
Q Consensus       197 ~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  276 (526)
                      ++.|++.+...+...+++.|..|++.|+++++++.....+|..+|+.+.+.+.+.+|++..+++.+++.++..++.....
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence            99999988877888899999999999999999999999999999999999999999999999888887777666666655


Q ss_pred             cCCC
Q 009757          277 SSTP  280 (526)
Q Consensus       277 ~~~~  280 (526)
                      ++.+
T Consensus       400 ~~~~  403 (417)
T PRK10489        400 GELR  403 (417)
T ss_pred             cccc
Confidence            5543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.53  E-value=3.6e-13  Score=130.60  Aligned_cols=164  Identities=25%  Similarity=0.329  Sum_probs=146.0

Q ss_pred             HHHHhhhhhhhhcchhhhhhhc-CCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChH-HHHHHHHHHHHHHhhhhhcc
Q 009757          108 LALCNADRVVMSVAIVPLSLAH-GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI-IMAWGVALWSLATFLTPWAA  185 (526)
Q Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~-~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~  185 (526)
                      .+.............|.+.++. |.++.+.++..+...++..++.++.|++.||+|||+ .+.++..+..++.+...+. 
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  262 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-  262 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-
Confidence            3344444455555666666665 899999999999999999999999999999999999 9999999999999998888 


Q ss_pred             ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 009757          186 DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG  265 (526)
Q Consensus       186 ~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~  265 (526)
                       ++.+.+++..++.|++.+...+...+++.|..|+++|++.+++.+...++|..+++.+.+.+.+..+|+..+++.+++.
T Consensus       263 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~  341 (352)
T cd06174         263 -PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALA  341 (352)
T ss_pred             -ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence             8889999999999999999999999999999999999999999999999999999999999999899999999999888


Q ss_pred             HHHHHHHH
Q 009757          266 FLWVLVWL  273 (526)
Q Consensus       266 ~~~~~~~~  273 (526)
                      ++..+..+
T Consensus       342 ~i~~i~~~  349 (352)
T cd06174         342 LLAALLLL  349 (352)
T ss_pred             HHHHHHhe
Confidence            77666544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.53  E-value=1.6e-13  Score=136.21  Aligned_cols=159  Identities=17%  Similarity=0.149  Sum_probs=132.3

Q ss_pred             hhhcchhhhhhhcCCccc----hhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHH
Q 009757          117 VMSVAIVPLSLAHGWSRS----FSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLAL  192 (526)
Q Consensus       117 ~~~~~~~~l~~~~~~s~~----~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l  192 (526)
                      ...+.++.+..+.+.+..    ..+.+.++..++..++.+..|++.||+|||+.+..+..+..++.+...+.  ++.+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  314 (408)
T PRK09874        237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV--QTPLQL  314 (408)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh--ccHHHH
Confidence            334445555555433332    34666677788888999999999999999999999988888887777777  788888


Q ss_pred             HHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Q 009757          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW  272 (526)
Q Consensus       193 ~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~  272 (526)
                      ++.+++.|++.+...+...+++.+..|+++|++.++++.....+|..+||.+++.+.+..||+..|++.+++.++..+..
T Consensus       315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        315 GILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             HHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998888777666


Q ss_pred             Hhhcc
Q 009757          273 LSATS  277 (526)
Q Consensus       273 ~~~~~  277 (526)
                      ++..+
T Consensus       395 ~~~~~  399 (408)
T PRK09874        395 WNSLR  399 (408)
T ss_pred             HHHHH
Confidence            55443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.52  E-value=6.7e-13  Score=130.09  Aligned_cols=147  Identities=13%  Similarity=0.053  Sum_probs=125.6

Q ss_pred             hhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhcc
Q 009757          125 LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEG  204 (526)
Q Consensus       125 l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g  204 (526)
                      +.+++|.++.+.+++.+...+...++.++.|++.||+|||+.+.++.++..+......+.  ++.+.+++.+++.|++.+
T Consensus       226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~g  303 (375)
T TIGR00899       226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD--NSLWALLMLQLLNAIFIG  303 (375)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            456789999999999888887888889999999999999999988877766666655566  778888888999999999


Q ss_pred             chhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHh
Q 009757          205 VALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (526)
Q Consensus       205 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  274 (526)
                      ...+....++.|..|+ +++++.+++....++|..++|.+++.+.+..||+..|++.+++.++..+...+
T Consensus       304 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       304 ILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            8888888999999874 66799999999999999999999999999999999999988877766655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10054 putative transporter; Provisional

Probab=99.51  E-value=1.2e-12  Score=128.69  Aligned_cols=173  Identities=12%  Similarity=0.126  Sum_probs=127.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHH
Q 009757          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (526)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (526)
                      +.++.+.+..++...+......++|.|+++.+|++..+.++..+...++..++.++.|+++||+++|+         .+.
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~---------~~~   77 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKR---------YML   77 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch---------hHH
Confidence            44667777888888888889999999998889999999999999999999999999999999999982         233


Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhcc
Q 009757          404 IGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE  482 (526)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~  482 (526)
                      .+.+...+..+.+...++.+..+....+.........+....+..+..| ++|+++.|+.+...++|..++|.+.+.+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~  157 (395)
T PRK10054         78 LAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM  157 (395)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444555444433333222223334445566566655 789999999999999999999999999885


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH
Q 009757          483 LVGSFQGFLLLTSLLYFLSALFYII  507 (526)
Q Consensus       483 ~~g~~~~~~~~~~~~~~~~~~~~~~  507 (526)
                       .| ++..|.+.+++.+++.+....
T Consensus       158 -~g-~~~~f~~~~~~~~i~~i~~~~  180 (395)
T PRK10054        158 -QS-INLPFWLAAICSAFPLVFIQI  180 (395)
T ss_pred             -hc-cCcHHHHHHHHHHHHHHHHHH
Confidence             45 788888877777666544433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.51  E-value=1.5e-12  Score=127.78  Aligned_cols=150  Identities=15%  Similarity=0.166  Sum_probs=124.8

Q ss_pred             cchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHh
Q 009757          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVV  199 (526)
Q Consensus       120 ~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  199 (526)
                      ..+|.+.++.|.++.+.|++.+...++..+++++.|++.||+|+|+.+..+..+..++.+... .    ........++.
T Consensus       221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~----~~~~~~~~~l~  295 (381)
T PRK03633        221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-S----QAAMAPALFIL  295 (381)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-h----hHHHHHHHHHH
Confidence            346777778899999999999999999999999999999999999999888888777665432 1    12334566778


Q ss_pred             hhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHh
Q 009757          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (526)
Q Consensus       200 Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  274 (526)
                      |++.....|...+.+.|..|+++++...+......++|..+||.+++++.++.||++.|.+.+.+.++..+..++
T Consensus       296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence            887777789999999999988888888888888999999999999999999999999999988877765554443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.50  E-value=1.6e-12  Score=128.00  Aligned_cols=152  Identities=17%  Similarity=0.100  Sum_probs=125.3

Q ss_pred             hhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHh-hhhhccccchHHHHHHHHHhh
Q 009757          122 IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF-LTPWAADTSLLALLAMRAVVG  200 (526)
Q Consensus       122 ~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~r~l~G  200 (526)
                      .|.+.+++|.+..+.+++.+...++..++.++.|++.||+|+|+.. .+..+..++.. +....  ++.+.++++.++.|
T Consensus       229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~g  305 (390)
T PRK03545        229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA--NSEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh--chHHHHHHHHHHHH
Confidence            3445566899999999999999999999999999999999988754 44444444433 33445  67888888999999


Q ss_pred             hhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhcc
Q 009757          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATS  277 (526)
Q Consensus       201 ig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  277 (526)
                      ++.+...+...+.+.+..| ++|++++++++....+|..+||+++|.+.+++|++..|++.+++.++..+...+..+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9988777778888888876 688999999999999999999999999999999999999999888877776666554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.49  E-value=2.3e-12  Score=126.70  Aligned_cols=164  Identities=15%  Similarity=0.099  Sum_probs=129.4

Q ss_pred             hhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHH
Q 009757          115 RVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLA  194 (526)
Q Consensus       115 ~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  194 (526)
                      ........|.+.+++|.+..+.|.+.+.+.++..++.++.|++.||+|||+.+.++..+..++.++..... ++...+. 
T Consensus       221 ~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~-  298 (393)
T PRK09705        221 YASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP-LQLPVLW-  298 (393)
T ss_pred             HHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc-chHHHHH-
Confidence            33444556676777899999999999999999999999999999999999999998888777776554431 2222222 


Q ss_pred             HHHHhhhhccchhhhhHHHHhhhcC-cchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHH
Q 009757          195 MRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVW  272 (526)
Q Consensus       195 ~r~l~Gig~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~~~~~~~  272 (526)
                       -++.|++.+...+.......+..+ ++++++..++.+....++..++|.+.+++.+..| |...|++.++..++..+..
T Consensus       299 -~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK09705        299 -AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIIT  377 (393)
T ss_pred             -HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence             345688888888877777777775 5789999999999999999999999999999876 7888888887777766666


Q ss_pred             HhhccCCCC
Q 009757          273 LSATSSTPD  281 (526)
Q Consensus       273 ~~~~~~~~~  281 (526)
                      ..+.||++.
T Consensus       378 ~~~~~~~~~  386 (393)
T PRK09705        378 LRFAPARFP  386 (393)
T ss_pred             HHhcccccc
Confidence            666666544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.49  E-value=9e-13  Score=132.80  Aligned_cols=174  Identities=17%  Similarity=0.078  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHhhhhhhhhcchhhh-hhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhh
Q 009757          102 SMLALALALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (526)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  180 (526)
                      ..+++..++.+..........|.+ .+++|.+..+.++..+...++..++.+++|+++||+|||+.+.....+..++..+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~  340 (467)
T PRK09556        261 WLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTL  340 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence            334444444444444455556654 4678999999999999999999999999999999999998776655444443322


Q ss_pred             hhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhh-HHHHHHHHHHHHHh---------
Q 009757          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMS---------  250 (526)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~ig~~l~~~l~~---------  250 (526)
                      ..+...++.+.+.+.+++.|++...........+.|.+|++.|+.+.|+.+...++ |..++|.+.|.+.+         
T Consensus       341 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~  420 (467)
T PRK09556        341 GVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIF  420 (467)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccc
Confidence            22221156667778888888654443434446777999999999999999998886 77999999999999         


Q ss_pred             ---hcCchhHHHHHHHHHHHHHHHHHhh
Q 009757          251 ---QAGIFGPFVIFGLSGFLWVLVWLSA  275 (526)
Q Consensus       251 ---~~gw~~~f~~~~~~~~~~~~~~~~~  275 (526)
                         ..||+..|++.++..++..+..++.
T Consensus       421 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        421 GYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHH
Confidence               5789999999877777665554433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.48  E-value=5.9e-13  Score=135.62  Aligned_cols=150  Identities=12%  Similarity=0.108  Sum_probs=118.2

Q ss_pred             hhcchhhhh-hhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Q 009757          118 MSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (526)
Q Consensus       118 ~~~~~~~l~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  196 (526)
                      ....+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+++.++.++..++.++.......+.+.+.+..
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL  373 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            345567766 5889999999999999999999999999999999999999988877766665544333223444454555


Q ss_pred             HHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 009757          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (526)
Q Consensus       197 ~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~  267 (526)
                      ++.+.......+....++.|.+|+++|++++++......+|..+||.+++.+.+.+||+..+...+....+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            55544433445677788999999999999999999999999999999999999999999888665544433

>PRK03699 putative transporter; Provisional

Probab=99.48  E-value=1.4e-12  Score=128.48  Aligned_cols=156  Identities=12%  Similarity=0.094  Sum_probs=129.0

Q ss_pred             hhhhcchhhhh-hhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHH
Q 009757          116 VVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLA  194 (526)
Q Consensus       116 ~~~~~~~~~l~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  194 (526)
                      ..+....|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+++|+.+.....+..+...+....  ++.+.+.+
T Consensus       222 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~  299 (394)
T PRK03699        222 LTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT--DDPSHLLY  299 (394)
T ss_pred             HHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc--CCchHHHH
Confidence            34445566666 5689999999999999999999999999999999999999988887777766666666  67777777


Q ss_pred             HHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHh
Q 009757          195 MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (526)
Q Consensus       195 ~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  274 (526)
                      ..++.|++.+..++...++..+..| +++++..+.......+|..++|.+.+++.+..||+..+++.+++.++..+....
T Consensus       300 ~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (394)
T PRK03699        300 AILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL  378 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence            7888999888888888888888775 556788888888999999999999999999999999999888777766554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.48  E-value=1.5e-12  Score=128.44  Aligned_cols=165  Identities=18%  Similarity=0.110  Sum_probs=119.6

Q ss_pred             HHHHHHhhhhhhhhcchhhhh-hhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChH--HHH------HHHHHHHH
Q 009757          106 LALALCNADRVVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI--IMA------WGVALWSL  176 (526)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~l~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~--~l~------~~~~~~~~  176 (526)
                      +..+.............|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+  ...      .+.++..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (399)
T TIGR00893       222 LGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSL  301 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Confidence            333444444445555556554 568999999999999999999999999999999999996  111      11111111


Q ss_pred             HHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-ch
Q 009757          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IF  255 (526)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g-w~  255 (526)
                      ........  ++.+..+...++.+.+.+ ..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |+
T Consensus       302 ~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~  378 (399)
T TIGR00893       302 LMFATNYV--NIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFA  378 (399)
T ss_pred             HHHHhccc--hhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchh
Confidence            11122222  344444444455555544 788999999999999999999999999999999999999999999888 99


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 009757          256 GPFVIFGLSGFLWVLVWL  273 (526)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~  273 (526)
                      ..|++.++..++..+..+
T Consensus       379 ~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       379 GALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999988887776655544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.47  E-value=6e-13  Score=133.27  Aligned_cols=152  Identities=14%  Similarity=0.061  Sum_probs=125.2

Q ss_pred             hhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHh--cChHHHHH--HHHHHHHHHhhhhhccccchHHH
Q 009757          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIMAW--GVALWSLATFLTPWAADTSLLAL  192 (526)
Q Consensus       117 ~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l~~--~~~~~~~~~~~~~~~~~~~~~~l  192 (526)
                      .....+|.+.+++|.+..+.+++.++..++..++.++.|+++||.  ++|+...+  +.++.+++.+++.+.  ++++.+
T Consensus       259 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~~  336 (455)
T TIGR00892       259 APIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA--GDYTGL  336 (455)
T ss_pred             chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh--chHHHH
Confidence            444456667778899999999999999999999999999999984  34443333  334444445555566  788889


Q ss_pred             HHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CchhHHHHHHHHHHHHHH
Q 009757          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFGPFVIFGLSGFLWVL  270 (526)
Q Consensus       193 ~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~-gw~~~f~~~~~~~~~~~~  270 (526)
                      ++.+++.|++.+...+...+++.|.+|++++++.+++++...++|..+||.+++.+.+.. +|+..|++.+++.++..+
T Consensus       337 ~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       337 VIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998877 599999998877665544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.46  E-value=6.7e-13  Score=130.92  Aligned_cols=161  Identities=12%  Similarity=0.097  Sum_probs=123.3

Q ss_pred             HHHHHHhhhhhhhhcchhhhh-hhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHH--hhhh
Q 009757          106 LALALCNADRVVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT--FLTP  182 (526)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~l~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~--~~~~  182 (526)
                      ...+.............|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+..  ++..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  305 (394)
T TIGR00883       226 GLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA  305 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444555566665 6789999999999999999999999999999999999998776554444333  2222


Q ss_pred             hccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHH-HHhhhhhHHHHHHHHHHHHHhhcC-chhHHHH
Q 009757          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAG-IFGPFVI  260 (526)
Q Consensus       183 ~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~l~~~l~~~~g-w~~~f~~  260 (526)
                      +...++.+.+++..++.|++.+...+...+++.|.+|+++|+++.++ ......+|..++|.+++++.++.| |+..++.
T Consensus       306 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~  385 (394)
T TIGR00883       306 LLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY  385 (394)
T ss_pred             HhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence            22124667777888899999888899999999999999999999998 456667899999999999999888 8887776


Q ss_pred             HHHHHH
Q 009757          261 FGLSGF  266 (526)
Q Consensus       261 ~~~~~~  266 (526)
                      .++..+
T Consensus       386 ~~~~~l  391 (394)
T TIGR00883       386 LAALAL  391 (394)
T ss_pred             HHHHHH
Confidence            665443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.46  E-value=2.3e-12  Score=130.74  Aligned_cols=182  Identities=17%  Similarity=0.112  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHH
Q 009757           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT  178 (526)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  178 (526)
                      ..+....+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            33444444444444444455556788888899999888999999999999999999999999999999999988888877


Q ss_pred             hhhhh---cccc------chHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 009757          179 FLTPW---AADT------SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (526)
Q Consensus       179 ~~~~~---~~~~------~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~  249 (526)
                      ++.++   ...+      +...+....++.+.......+....++.|.+|+++|++++++.....++|.++++.+.+.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~  443 (481)
T TIGR00879       364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML  443 (481)
T ss_pred             HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76652   1112      22233333333333223334666778899999999999999999999999999999999999


Q ss_pred             hhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 009757          250 SQAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (526)
Q Consensus       250 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  280 (526)
                      ++.+|++.|++.++++++..++.+++.||++
T Consensus       444 ~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       444 ESIGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HhcCccceehhHHHHHHHHHHHHheecccCC
Confidence            9899999999998888887777766665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00897 2A0118 polyol permease family

Probab=99.45  E-value=4e-12  Score=125.61  Aligned_cols=165  Identities=12%  Similarity=0.089  Sum_probs=126.0

Q ss_pred             HHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHH-HHHHHHHHHHhhhhhc---
Q 009757          109 ALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA-WGVALWSLATFLTPWA---  184 (526)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~---  184 (526)
                      ++............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.+.+.   
T Consensus       232 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~  311 (402)
T TIGR00897       232 IINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH  311 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            333333444555678888889999999999999999999999999999999999988764 3333333333332221   


Q ss_pred             cccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 009757          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLS  264 (526)
Q Consensus       185 ~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~  264 (526)
                      ..++.+.+++..++.|++.+...+ ....+.+.. +++|+++.|+.+....+|..++|.+++.+.+..||+..+++.+++
T Consensus       312 ~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~  389 (402)
T TIGR00897       312 FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL  389 (402)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            114667777888899998887554 455667765 468999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHhh
Q 009757          265 GFLWVLVWLSA  275 (526)
Q Consensus       265 ~~~~~~~~~~~  275 (526)
                      .++..++..+.
T Consensus       390 ~~i~~~~~~~~  400 (402)
T TIGR00897       390 YVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHh
Confidence            77766655543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.44  E-value=1.7e-11  Score=117.06  Aligned_cols=182  Identities=10%  Similarity=0.071  Sum_probs=141.3

Q ss_pred             hHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccc
Q 009757          316 PFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVT  395 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~  395 (526)
                      ...+++.+++...+.+...+..++...+.+++=-++++ ++..+..-|........+.++.-++.+++.+|+|+-     
T Consensus       363 ~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv-----  436 (618)
T KOG3762|consen  363 DVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHV-----  436 (618)
T ss_pred             HHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhccc-----
Confidence            34467788887777777777777777788888778888 576777778777777778888889999999999987     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHh-HHHHHH
Q 009757          396 LTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGT-FAAILG  473 (526)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~-lg~~~~  473 (526)
                          -++..++.+...-++.+....++|..+..=++-....+..+....++++...| +.++++.|+...... +|-.+|
T Consensus       437 ----~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~G  512 (618)
T KOG3762|consen  437 ----NVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLG  512 (618)
T ss_pred             ----ceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchh
Confidence                34556667777777777777888888877777777777777777778777766 799999999877664 899999


Q ss_pred             HHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          474 TVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       474 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      .+++|.+.+.+| -...|..+++.+++.+++...+
T Consensus       513 slIGG~~v~~fg-~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  513 SLIGGFVVERFG-ARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             hhhhhhhheeeh-hHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999998 6777777777666666555554

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.44  E-value=6.3e-12  Score=125.38  Aligned_cols=170  Identities=14%  Similarity=-0.051  Sum_probs=115.4

Q ss_pred             HHHhhhhhhhhcchhhhh-hhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHh--cChHHH-HHHHHHHHHHHhhhhhc
Q 009757          109 ALCNADRVVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIM-AWGVALWSLATFLTPWA  184 (526)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~~  184 (526)
                      +........+....|.+. +++|.+..+.++..+.+.++..++.++.|+++||+  ++|+.. ....+...+........
T Consensus       253 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~  332 (434)
T PRK11663        253 VLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM  332 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc
Confidence            333333334444556555 67899999999999999999999999999999999  333322 22111111111111111


Q ss_pred             cccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 009757          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLS  264 (526)
Q Consensus       185 ~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~  264 (526)
                      ...+...+.+..+..|++...........+.|.+|+++|+.+.|+.+....+|..++|.+.+++.+..||+..|++.+++
T Consensus       333 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~  412 (434)
T PRK11663        333 PFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIA  412 (434)
T ss_pred             ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHH
Confidence            11333344444445555433223334456789999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHhhccC
Q 009757          265 GFLWVLVWLSATSS  278 (526)
Q Consensus       265 ~~~~~~~~~~~~~~  278 (526)
                      .++..+..++..++
T Consensus       413 ~~~~~~~~~~~~~~  426 (434)
T PRK11663        413 AGISALLLLPFLNA  426 (434)
T ss_pred             HHHHHHHHHHHHhh
Confidence            87776666554433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.43  E-value=6.7e-12  Score=126.01  Aligned_cols=174  Identities=10%  Similarity=0.047  Sum_probs=129.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--hcCCcchhhhHhhHhHHHHHHHHHHHHHHHHH-HHhhcCccchhHHHH
Q 009757          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFV--YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLTRKIL  401 (526)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~~~~~~~~~~~~~~~  401 (526)
                      .++.+.+..++..++++++..++|.|+++.  +|++..+++.+.+...++..++.+++|+++|| +|||         ..
T Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~---------~~   81 (475)
T TIGR00924        11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK---------KT   81 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH---------HH
Confidence            355666677777889999999999999987  89999999999999999999999999999999 7988         33


Q ss_pred             HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-c---chhhHHHHHHHHHhHHHHHHHHHH
Q 009757          402 QSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-Q---YSGVLHGISNTAGTFAAILGTVGA  477 (526)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~g~~~g~~~~~~~lg~~~~~~~~  477 (526)
                      +..+.++.+++.+.+...++.+.......+.....+...+.......+..| +   +|+++.++.+...++|..+||.+.
T Consensus        82 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~  161 (475)
T TIGR00924        82 MVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLA  161 (475)
T ss_pred             HHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHH
Confidence            444555555555555444444433333333222233444556666666665 2   388899999999999999999999


Q ss_pred             hhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          478 GFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       478 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      |++.+..| |+..|...++..+++.+.+...
T Consensus       162 g~l~~~~g-~~~~f~~~~~~~~~~~l~~~~~  191 (475)
T TIGR00924       162 GVIAENYG-YHVGFNLAAVGMVIGLLTFFAG  191 (475)
T ss_pred             HHHHHhcC-hHHHHHHHHHHHHHHHHHHHHc
Confidence            99999887 8889888777666665554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.43  E-value=8.9e-12  Score=122.25  Aligned_cols=146  Identities=19%  Similarity=0.073  Sum_probs=123.8

Q ss_pred             cchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHh
Q 009757          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVV  199 (526)
Q Consensus       120 ~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  199 (526)
                      ...|.+.++.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+.++.++.+++.++.++.  ++.+.+++..++.
T Consensus       226 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~  303 (382)
T PRK11128        226 GFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST--TALPWLIVIQILH  303 (382)
T ss_pred             HHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHH
Confidence            34455657789999999999999999999999999999999999999999999999988888877  8999999999999


Q ss_pred             hhhccchhhhhHHHHhhhcCcchhhHHHHHHH-hhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 009757          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWV  269 (526)
Q Consensus       200 Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~  269 (526)
                      |++.+...+....++.+. +++++++..+++. ...++|..+||.++|.+.+.+|+ ..|+..+++.++.+
T Consensus       304 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        304 CGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            999998899999998887 5667788888876 55678889999999999999887 46666666555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.42  E-value=1.3e-10  Score=117.35  Aligned_cols=154  Identities=14%  Similarity=0.059  Sum_probs=121.6

Q ss_pred             hhhhhhhcCCccchhhHHHH-HHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhh---hhccccchHHHHHHHH
Q 009757          122 IVPLSLAHGWSRSFSGIVQS-SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLLALLAMRA  197 (526)
Q Consensus       122 ~~~l~~~~~~s~~~~g~~~s-~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~~r~  197 (526)
                      .|.+.+++|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.+++   +.. .++.+.+.+.-+
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-~~~~~~l~~~~~  324 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT-DKNLYSMGAAVF  324 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHH
Confidence            44556778999999999974 6678999999999999999999998877666555544332   222 135555555666


Q ss_pred             HhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhc
Q 009757          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (526)
Q Consensus       198 l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  276 (526)
                      ++.++.|...+...++..+..+++.+++..++.+...++|..+++.+.|.+.+..||+..|.+.++++++..+...+.+
T Consensus       325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666777888999999999999999999999999999999999999999999999998888887766665553

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.42  E-value=5.3e-12  Score=126.66  Aligned_cols=160  Identities=11%  Similarity=0.011  Sum_probs=112.6

Q ss_pred             hhhhcchhhhhhh-cCCccchhhHHHHHHHHHHHHhhhhhhHHHhHh--cChHHH-HHHHHHHHHHHhhhhhccccchHH
Q 009757          116 VVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIM-AWGVALWSLATFLTPWAADTSLLA  191 (526)
Q Consensus       116 ~~~~~~~~~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~  191 (526)
                      ......+|.+.++ .|.+..+.+++...+.++..++.+++|+++||+  |||+.. .....+..++.++..+....+.+.
T Consensus       270 ~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  349 (452)
T PRK11273        270 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTV  349 (452)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHH
Confidence            3445566776654 789999999999999999999999999999999  555432 222333333333322221134455


Q ss_pred             HHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHH-HHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 009757          192 LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAI-GLVLSPILMSQAGIFGPFVIFGLSGFLWVL  270 (526)
Q Consensus       192 l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i-g~~l~~~l~~~~gw~~~f~~~~~~~~~~~~  270 (526)
                      .+++.++.|.+..........++.|.+|+++|+++.|+.+....+|..+ +|.+.+.+.++.||+..|++.++.+++.++
T Consensus       350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~  429 (452)
T PRK11273        350 DMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI  429 (452)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            5555555565433333344456789999999999999999888887654 799999999999999999988887777666


Q ss_pred             HHHhh
Q 009757          271 VWLSA  275 (526)
Q Consensus       271 ~~~~~  275 (526)
                      ....+
T Consensus       430 ~~~~~  434 (452)
T PRK11273        430 LLIVV  434 (452)
T ss_pred             HHHHH
Confidence            55544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.42  E-value=1.5e-11  Score=115.99  Aligned_cols=164  Identities=20%  Similarity=0.212  Sum_probs=135.9

Q ss_pred             HHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccch
Q 009757          110 LCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSL  189 (526)
Q Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  189 (526)
                      ........+...-|.+.+..|.+.+.++++.-+|.++..+++.+.|+++|| +.|+.+.....+.++..+.+.+.. ++.
T Consensus       223 ~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~-~~~  300 (394)
T COG2814         223 FMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG-ASP  300 (394)
T ss_pred             HHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc-chH
Confidence            333444566667788888899999999999999999999999999999999 999999988888877777665552 556


Q ss_pred             HHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 009757          190 LALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWV  269 (526)
Q Consensus       190 ~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~  269 (526)
                      +..++.-++.|++.+.........+++ .-++.++.+.+++....++|..+|..++|.+.+++|+....++.+++.++..
T Consensus       301 ~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~  379 (394)
T COG2814         301 ALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLAL  379 (394)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence            667777777888777766666666666 3368999999999999999999999999999999999999999999888877


Q ss_pred             HHHHhhc
Q 009757          270 LVWLSAT  276 (526)
Q Consensus       270 ~~~~~~~  276 (526)
                      ++.+...
T Consensus       380 ~~~~~~~  386 (394)
T COG2814         380 LLALLSA  386 (394)
T ss_pred             HHHHHHH
Confidence            7665543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.41  E-value=2e-11  Score=120.34  Aligned_cols=169  Identities=14%  Similarity=0.178  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHH
Q 009757          327 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF  406 (526)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  406 (526)
                      +.+....++...+.+.+..+++.|+++.+|++..+.|+..+...+...+..++.|+++||+++|         ..+..+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k---------~~l~~~~   83 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAK---------PMIVTGM   83 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCch---------HHHHHHH
Confidence            4555777777888888899999999888999999999999999999999999999999999988         3344444


Q ss_pred             HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccc
Q 009757          407 IAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (526)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g  485 (526)
                      ....+..+.....++.+......++.....+...+.......+..| ++|+++.|+.+...++|..+||.+.|++. ..|
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g  162 (400)
T PRK11646         84 LMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD  162 (400)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence            4444444444444555544444333333334444555566666654 79999999999999999999999999998 455


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q 009757          486 SFQGFLLLTSLLYFLSALFYI  506 (526)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~  506 (526)
                       ++..|++.+++.++..++..
T Consensus       163 -~~~~f~~~~~~~~~~~i~~~  182 (400)
T PRK11646        163 -FRLVCATGAVLFVLAAAFNA  182 (400)
T ss_pred             -HHHHHHHHHHHHHHHHHHHH
Confidence             88888887766665554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.40  E-value=3.3e-12  Score=126.60  Aligned_cols=138  Identities=13%  Similarity=0.083  Sum_probs=115.2

Q ss_pred             chhh-hhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHh-hhhhccccchHHHHHHHHH
Q 009757          121 AIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF-LTPWAADTSLLALLAMRAV  198 (526)
Q Consensus       121 ~~~~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~r~l  198 (526)
                      ..|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++..+... +....  ++.+.+.+..++
T Consensus       260 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  337 (405)
T TIGR00891       260 LLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG--ANVAVLGLGLFF  337 (405)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence            3444 4567899999999999999999999999999999999999998888776543333 33333  566777777788


Q ss_pred             hhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-chhHHHH
Q 009757          199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVI  260 (526)
Q Consensus       199 ~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g-w~~~f~~  260 (526)
                      .|++.+...+....++.|.+|+++|++++|+.+....+|..++|++++.+.++.| |+..+..
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            8877777788888999999999999999999999999999999999999999888 8776654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.40  E-value=6.7e-12  Score=125.25  Aligned_cols=143  Identities=13%  Similarity=0.080  Sum_probs=108.2

Q ss_pred             hhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHH
Q 009757          118 MSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (526)
Q Consensus       118 ~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  197 (526)
                      +...+|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..++.+.......++...+.+..+
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF  329 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            34456777777899999999999999999999999999999999999999988877776655544331122322222222


Q ss_pred             HhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHH
Q 009757          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (526)
Q Consensus       198 l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~  260 (526)
                      ..+.+..+..+....++.|.+|+++|++++|+......+|..++|.+.+++.++.|+....++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~  392 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF  392 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            233333334456677889999999999999999999999999999999999998886654333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.40  E-value=4.7e-12  Score=117.85  Aligned_cols=176  Identities=16%  Similarity=0.141  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHH
Q 009757          326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG  405 (526)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  405 (526)
                      +....+.+..+++.--.+..-.|...++ .|+|..+.|.+.+.+.+...++..+.|.++||.+.|         ..+..+
T Consensus        31 f~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr---------~fm~~g  100 (448)
T COG2271          31 FLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPR---------YFMAFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc---------eeehHH
Confidence            4444555555666666666667766666 789999999999999999999999999999999988         567788


Q ss_pred             HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHH--hhhcc
Q 009757          406 FIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGA--GFFVE  482 (526)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~--g~l~~  482 (526)
                      +++.++..+++.+.++.+.+.++..+...+.+.+.+.....+....+ ++||+..++-|+..++|+.+.|++.  +++.+
T Consensus       101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~  180 (448)
T COG2271         101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF  180 (448)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence            88888888888888888888878888777888888888777777777 6999999999999999999999999  88888


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009757          483 LVGSFQGFLLLTSLLYFLSALFYIIFSTGE  512 (526)
Q Consensus       483 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (526)
                      +.+ ++..|++.++++++..++.+...+++
T Consensus       181 ~~~-w~~~f~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         181 HGG-WRAAFYFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             ccc-hhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            875 99999999988887777666654443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.40  E-value=2.1e-11  Score=120.59  Aligned_cols=174  Identities=16%  Similarity=0.196  Sum_probs=125.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHH-HhhcCccchhHHHHH
Q 009757          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML-IQRGTSVTLTRKILQ  402 (526)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-~~~~~~~~~~~~~~~  402 (526)
                      +.++.++...+...+.++++..++|.|+++.+|++..+++.+...+.....++.+++|+++||+ |||         ..+
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr---------r~i   79 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR---------MAV   79 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH---------HHH
Confidence            3466667777777889999999999999988999999999999999999999999999999999 888         233


Q ss_pred             HHHHHHHHHHHHhhccCc-hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-c--chhhHHHHHHHHHhHHHHHHHHHHh
Q 009757          403 SIGFIAPGIALIGLTAAK-SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-Q--YSGVLHGISNTAGTFAAILGTVGAG  478 (526)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~g~~~g~~~~~~~lg~~~~~~~~g  478 (526)
                      ..+.+...++.+.+.... ........+.+.....+...+....+..+..| +  +|+++.++.+...++|+.++|.+.|
T Consensus        80 liG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g  159 (493)
T PRK15462         80 MLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACG  159 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHH
Confidence            344444443333332211 11212222222212223333555667778776 3  6999999999999999999999999


Q ss_pred             hhccccchhHHHHHHHHHHHHHHHHHHHH
Q 009757          479 FFVELVGSFQGFLLLTSLLYFLSALFYII  507 (526)
Q Consensus       479 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  507 (526)
                      ++.+..| |+..|..+++..+++++.++.
T Consensus       160 ~L~~~~G-w~~~F~iaaigm~l~li~~~~  187 (493)
T PRK15462        160 YAQEEYS-WAMGFGLAAVGMIAGLVIFLC  187 (493)
T ss_pred             HHHhhhC-hHHHHHHHHHHHHHHHHHHHH
Confidence            9999887 888888877766666655544

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.40  E-value=9.4e-09  Score=100.81  Aligned_cols=275  Identities=11%  Similarity=-0.028  Sum_probs=170.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCC-----ccchhhHHHHHHHHHHHHh-hhhhhHHHhHhcChHHHHHHHH
Q 009757           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGW-----SRSFSGIVQSSFLWGYLVS-PIAGGTLVDYYGGKIIMAWGVA  172 (526)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----s~~~~g~~~s~~~~~~~~~-~~~~G~l~dr~Grr~~l~~~~~  172 (526)
                      +.+..+.+..|+..+..+..-    ++.+.+.+     ..+.+.++-+...+...+. .++.+++++|++|++++-+...
T Consensus         7 ~k~~~~~l~fF~il~~Y~iLR----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTILR----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            344445555555555444443    34555444     4468899999888887777 8899999999999999888777


Q ss_pred             HHHHHHhhhhhcccc-----------------------------chHHHHHHHHHhhhhccchhh-hhHHHHhhhcCcch
Q 009757          173 LWSLATFLTPWAADT-----------------------------SLLALLAMRAVVGLAEGVALP-AMNNMVARWFPQTE  222 (526)
Q Consensus       173 ~~~~~~~~~~~~~~~-----------------------------~~~~l~~~r~l~Gig~g~~~~-~~~~~i~~~~~~~~  222 (526)
                      .+....+++++..-+                             +.|...+..+...+-...... .-.++++|.+..+|
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q  162 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE  162 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            777766665554100                             123333444444454444444 67889999999999


Q ss_pred             hhHHHHHHHhhhhhHHHHHHHHHHHHHhh--------cCch----hHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhH
Q 009757          223 RARAVAIAMGGFTSGNAIGLVLSPILMSQ--------AGIF----GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYE  290 (526)
Q Consensus       223 r~~~~~~~~~~~~~G~~ig~~l~~~l~~~--------~gw~----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (526)
                      -.|..+++..+.++|.++++.+..++.+.        ..|.    ..+.+.++..++...+...+.+.. ...+...+.+
T Consensus       163 akRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~  241 (472)
T TIGR00769       163 AKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNV-LTDPRSYNPA  241 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccccchh
Confidence            99999999999999999999998887631        1242    233333333333333333332222 1111111111


Q ss_pred             HHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcch----hhhHh
Q 009757          291 LEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ----ASWFS  366 (526)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~  366 (526)
                      .           ..++++++....++++.++++|.++.+.+...++....+.+....-..+++.+ -++.+    .|.+.
T Consensus       242 ~-----------~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~-p~~~~~~~f~g~~~  309 (472)
T TIGR00769       242 L-----------KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQY-PSPNEYSAFMGDFS  309 (472)
T ss_pred             h-----------ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
Confidence            0           00222234455678889999999888888888887777777665666666644 23322    23334


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHhh
Q 009757          367 AVPWSVMAFTGYLGGLLSDMLIQR  390 (526)
Q Consensus       367 ~~~~~~~~i~~~~~g~l~dr~~~~  390 (526)
                      ...++..++..++.+++.+|+|-+
T Consensus       310 ~~~gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       310 TWTGVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHH
Confidence            444555555666668888888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.39  E-value=1.4e-11  Score=119.46  Aligned_cols=164  Identities=20%  Similarity=0.250  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHH
Q 009757          331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPG  410 (526)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  410 (526)
                      +..++...........+|.++.+.+|.+..+.+++.+...++..++.++.|++.||+|+|         ..+..+.++.+
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~l~~~~~~~~   73 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR---------RVLIIGLLLFA   73 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH---------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe---------eeEeehhhhhh
Confidence            455566666666777778566666899999999999999999999999999999999998         23344444444


Q ss_pred             HHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHH
Q 009757          411 IALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQG  489 (526)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~  489 (526)
                      +..+.....++.+..+...++.....+...+....+..+..| ++|+++.|+.+....+|..++|.+.+.+.+..| ++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~  152 (352)
T PF07690_consen   74 LGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRW  152 (352)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCC
T ss_pred             hHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-ccc
Confidence            442222222444444444444444445666777777788777 599999999999999999999999999998877 888


Q ss_pred             HHHHHHHHHHHHHHH
Q 009757          490 FLLLTSLLYFLSALF  504 (526)
Q Consensus       490 ~~~~~~~~~~~~~~~  504 (526)
                      .|++.+++.+++.++
T Consensus       153 ~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  153 AFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhhh
Confidence            888888888777664

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.38  E-value=2.4e-11  Score=118.46  Aligned_cols=170  Identities=12%  Similarity=0.101  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHH
Q 009757          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (526)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (526)
                      .+.+..++...+.......+|.|..+ .+.+..+.+++.+...++..++.++.|++.||+|||+         .+..+.+
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~---------~~~~~~~   72 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKK---------VMIGADL   72 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhH---------HHHHHHH
Confidence            34556666667777777888888888 7999999999999999999999999999999999982         2222222


Q ss_pred             HHHHHHHhhccCc-----hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhc
Q 009757          408 APGIALIGLTAAK-----SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV  481 (526)
Q Consensus       408 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~  481 (526)
                      +..+.........     +.+...+..++.....+...+....+..+..| ++|+++.|+.+....+|..++|.+.+.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        73 IRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222211111     44544444444444455556667777777776 69999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          482 ELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       482 ~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      +..| ++..+++.++..+++.+.....
T Consensus       153 ~~~g-~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       153 ATLG-IKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             HHhh-HHHHHHHHHHHHHHHHHHHHhc
Confidence            8887 8888877776666555544443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.37  E-value=2.4e-11  Score=121.76  Aligned_cols=154  Identities=21%  Similarity=0.209  Sum_probs=138.3

Q ss_pred             hhcchhhhhh-hcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Q 009757          118 MSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (526)
Q Consensus       118 ~~~~~~~l~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  196 (526)
                      +...+|.+.+ ++|.++...|++.+++.+|..++++..+++.+|+++++.+..+.++.+++.+..++.  ++.+..++..
T Consensus       237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~--~~~~~~~~~l  314 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS--PSFWLALIAL  314 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc--hHHHHHHHHH
Confidence            3445677664 589999999999999999999999999999999999999999999999999999998  9999999999


Q ss_pred             HHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 009757          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL  273 (526)
Q Consensus       197 ~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  273 (526)
                      ++.|++.....+...+.+.+..|++.|||.++++.+....+..+|..+.|.+.+.+|.+..+.+.++..++..++.+
T Consensus       315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988999999999999999999999999999999999999999999999999998887776555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10504 putative transporter; Provisional

Probab=99.37  E-value=6.2e-11  Score=119.88  Aligned_cols=174  Identities=11%  Similarity=0.045  Sum_probs=126.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHH
Q 009757          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (526)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (526)
                      +.+|.+.+..++.......+..++|.+.++ +|.+..+.+++.+...++..++.++.|++.||+|||+         ...
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~---------~~~   79 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRN---------IFF   79 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH---------HHH
Confidence            356777777888777888888999999987 8999999999999989999999999999999999982         222


Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhcc
Q 009757          404 IGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE  482 (526)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~  482 (526)
                      .+..+.++..+.....++.+..+...++.+...+...+.......+..| ++++++.|+.+....+|..++|.+.|.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~  159 (471)
T PRK10504         80 TAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE  159 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence            3333333333333333444444444333333333444555666666666 689999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          483 LVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       483 ~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      ..| |+..|.+...+..++.+.....
T Consensus       160 ~~g-w~~~f~~~~~~~~l~~~~~~~~  184 (471)
T PRK10504        160 YAS-WHWIFLINIPVGIIGAIATLML  184 (471)
T ss_pred             hcc-HHHHHHHHHHHHHHHHHHHHHh
Confidence            887 8888888776666555554444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.36  E-value=7.1e-11  Score=119.36  Aligned_cols=179  Identities=8%  Similarity=0.058  Sum_probs=124.5

Q ss_pred             HHHcCch-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHH-HHhhcCccch
Q 009757          319 RLLSKMP-TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTL  396 (526)
Q Consensus       319 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~~~~~~~~~~  396 (526)
                      +.+++|+ ++..++..++..++++.+..+++.|+++.+|++..+++..............+++|++.|| +|+|      
T Consensus        15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r------   88 (500)
T PRK09584         15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK------   88 (500)
T ss_pred             hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH------
Confidence            4556764 7788888888889999999999999988899999988888777665555556789999999 5988      


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccCc-hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhccc---chhhHHHHHHHHHhHHHHH
Q 009757          397 TRKILQSIGFIAPGIALIGLTAAK-SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ---YSGVLHGISNTAGTFAAIL  472 (526)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~lg~~~  472 (526)
                         ..+..+.++..++........ ..+.......+.....+...+....+..+..|+   +++.+.++.+...++|..+
T Consensus        89 ---~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~  165 (500)
T PRK09584         89 ---RVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF  165 (500)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH
Confidence               233344444444444333322 222222222222223333445555667777653   3456788999999999999


Q ss_pred             HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHH
Q 009757          473 GTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYII  507 (526)
Q Consensus       473 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  507 (526)
                      +|.+.|++.+..| |+..|.+.++..+++.+.++.
T Consensus       166 gp~i~g~l~~~~g-~~~~F~i~~i~~~i~~i~~~~  199 (500)
T PRK09584        166 SMLATPWLAAKYG-WSVAFALSVVGMLITVVNFAF  199 (500)
T ss_pred             HHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999887 999998877666665544433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.36  E-value=1.8e-11  Score=124.17  Aligned_cols=164  Identities=18%  Similarity=0.060  Sum_probs=124.1

Q ss_pred             hhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccc-h-HHHHH
Q 009757          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS-L-LALLA  194 (526)
Q Consensus       117 ~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~-~-~~l~~  194 (526)
                      ......|.+.++.|.+....++......+...++.++.|+++||+|||+.++.+.++.+++.++++.....+ . .....
T Consensus       289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~  368 (479)
T PRK10077        289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  368 (479)
T ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            334456888888999888778887888888999999999999999999999999999988877765431111 1 12233


Q ss_pred             HHHHhhhhccc-hhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHH------hhcCchhHHHHHHHHHHH
Q 009757          195 MRAVVGLAEGV-ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM------SQAGIFGPFVIFGLSGFL  267 (526)
Q Consensus       195 ~r~l~Gig~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~------~~~gw~~~f~~~~~~~~~  267 (526)
                      +.++.+++.+. ..+....++.|.+|+++|+.++++......+|.++++.+.+.+.      +..+|+..|++.++++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL  448 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence            33444444443 34677899999999999999999999999999998876665443      578899999998888777


Q ss_pred             HHHHHHhhccCCC
Q 009757          268 WVLVWLSATSSTP  280 (526)
Q Consensus       268 ~~~~~~~~~~~~~  280 (526)
                      ..++.+++.||++
T Consensus       449 ~~~~~~~~~~e~~  461 (479)
T PRK10077        449 AALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHhccccCC
Confidence            7776666666543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.36  E-value=2.1e-10  Score=102.39  Aligned_cols=175  Identities=17%  Similarity=0.108  Sum_probs=134.6

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHH
Q 009757           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (526)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  176 (526)
                      ||..+........ .....+.++..-|++++.+|+|.+|...+.++..+|..+ +++.|.+.|++|++.++.+|.+...+
T Consensus         1 rW~~l~a~~~v~~-~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen    1 RWLSLVASIWVQL-CSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV   78 (250)
T ss_pred             ChhhHHHHHHHHH-hcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            3555444444443 444667888899999999999999999999999999987 58889999999999999999999999


Q ss_pred             HHhhhhhcc-----ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 009757          177 ATFLTPWAA-----DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ  251 (526)
Q Consensus       177 ~~~~~~~~~-----~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~  251 (526)
                      |..+..++.     ..++|.+.+..++.|.+.+....+......+.|| ++||.+.|+.-...+++..+-..+...+.+.
T Consensus        79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            998876653     2467888888888888888777777777778897 6899999999999999998888877777654


Q ss_pred             cCchhHHHHHHHH-HHHHHHHHHhh
Q 009757          252 AGIFGPFVIFGLS-GFLWVLVWLSA  275 (526)
Q Consensus       252 ~gw~~~f~~~~~~-~~~~~~~~~~~  275 (526)
                      ..-+. +++.+.. .++.++..++.
T Consensus       158 ~~~~f-ll~la~~~~~v~l~~~~~v  181 (250)
T PF06813_consen  158 DPSSF-LLFLAVLPAVVCLVAMFFV  181 (250)
T ss_pred             ChHHH-HHHHHHHHHHHHHHHhhhe
Confidence            22333 3333433 33333333333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.35  E-value=2.3e-11  Score=120.08  Aligned_cols=143  Identities=13%  Similarity=0.091  Sum_probs=122.2

Q ss_pred             CCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhh
Q 009757          130 GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPA  209 (526)
Q Consensus       130 ~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~  209 (526)
                      +.+....|++.++..+...++.+..|++.||+|+|+.+.++.++.+++..+....  ++.+.+++.++++|++.+.....
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~  327 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA--TTALEVVILKMLHAFEVPFLLVG  327 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHH
Confidence            5566678999999999999999999999999999999999999988888877777  88888899999999998776667


Q ss_pred             hHHHHhhhcCcchhhHHHHH-HHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHh
Q 009757          210 MNNMVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (526)
Q Consensus       210 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  274 (526)
                      ...++.+..+++.++...+. .+....+|..+++.++|++.+..||+..|.+.+++.++..++..+
T Consensus       328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            77778888887777776666 678899999999999999999999999999998887776655443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.35  E-value=4.5e-11  Score=117.63  Aligned_cols=165  Identities=13%  Similarity=0.066  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHH
Q 009757          333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA  412 (526)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (526)
                      .+............+|.+.++ +|.+..+.+++.+...++..++.++.|++.||++||         ..+..+.+...+.
T Consensus        14 ~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r---------~~~~~~~~~~~~~   83 (385)
T TIGR00710        14 SILGPLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR---------PVLLLGLFIFALS   83 (385)
T ss_pred             HHHHHHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh---------HHHHHHHHHHHHH
Confidence            333444555555667766666 899999999999999999999999999999999988         2333344444444


Q ss_pred             HHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHH
Q 009757          413 LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFL  491 (526)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~  491 (526)
                      .+.....++.+......++.....+...+....+..+..| ++|+++.|+.+....++..+++.+.+.+.+..| ++..+
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~  162 (385)
T TIGR00710        84 SLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIF  162 (385)
T ss_pred             HHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHH
Confidence            4444444555554444444333344445556666777766 689999999999999999999999999998877 88888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 009757          492 LLTSLLYFLSALFYIIF  508 (526)
Q Consensus       492 ~~~~~~~~~~~~~~~~~  508 (526)
                      ++.+++.++..+.....
T Consensus       163 ~~~~~~~~~~~~~~~~~  179 (385)
T TIGR00710       163 AFLSLAGILLSALIFFI  179 (385)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            87777666655554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.35  E-value=3.4e-11  Score=118.55  Aligned_cols=150  Identities=18%  Similarity=0.119  Sum_probs=115.7

Q ss_pred             chhhhhhhcCCccchhhHHHHHHHH-HHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhh-c---cccchHHHHHH
Q 009757          121 AIVPLSLAHGWSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW-A---ADTSLLALLAM  195 (526)
Q Consensus       121 ~~~~l~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~---~~~~~~~l~~~  195 (526)
                      ..+.+.+|.|.+++++|++...... ...++.++.|++.||+|+|+.+.++.++.++..+.... .   ..++.+.++..
T Consensus       230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            3455666789999999999888764 66677899999999999999988877665333332211 1   01334445555


Q ss_pred             HHHhhhhccchhhhhHHHHhhhcCc-chhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 009757          196 RAVVGLAEGVALPAMNNMVARWFPQ-TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL  270 (526)
Q Consensus       196 r~l~Gig~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~  270 (526)
                      ..+.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+..||+..|++.+++.++..+
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            5666777787778888888788776 78999999999999999999999999999999999999988776665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00895 2A0115 benzoate transport

Probab=99.35  E-value=8.7e-12  Score=123.18  Aligned_cols=140  Identities=21%  Similarity=0.212  Sum_probs=113.1

Q ss_pred             HHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccc
Q 009757          107 ALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD  186 (526)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  186 (526)
                      ..++............|.+.+++|.+..+.+++.+...++..++.++.|++.||+|+|+.+....+......++....  
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--  335 (398)
T TIGR00895       258 LYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTL--  335 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh--
Confidence            333333444445555678888899999999999999999999999999999999999955544444333333333324  


Q ss_pred             cchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 009757          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (526)
Q Consensus       187 ~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l  248 (526)
                      .+.+.+++..++.|++.+...+...+++.|.+|+++|+++.|+......+|..+||.++|++
T Consensus       336 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       336 FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            67777888889999999999999999999999999999999999999999999999999875

>PRK09952 shikimate transporter; Provisional

Probab=99.34  E-value=5.9e-11  Score=118.46  Aligned_cols=152  Identities=11%  Similarity=0.042  Sum_probs=113.0

Q ss_pred             hhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhc--cccchHHHHHHHHHhhh
Q 009757          124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA--ADTSLLALLAMRAVVGL  201 (526)
Q Consensus       124 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~~r~l~Gi  201 (526)
                      .+.+++|.+......+..+..+...++.++.|+++||+|||+++..+.++..++.+.+...  ..++.+.+++..++.|+
T Consensus       276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  355 (438)
T PRK09952        276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI  355 (438)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            3456788888766666666677778888999999999999999888877665554333221  11334555556677788


Q ss_pred             hccchhhhhHHHHhhhcCcchhhHHHHHHH-hhhhhHHHHHHHHHHHHHhhc--CchhHHHHHHHHHHHHHHHHHhh
Q 009757          202 AEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQA--GIFGPFVIFGLSGFLWVLVWLSA  275 (526)
Q Consensus       202 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~l~~~l~~~~--gw~~~f~~~~~~~~~~~~~~~~~  275 (526)
                      +.+...+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+.+++.+..  +|+..+...++..++..+..+..
T Consensus       356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            888888888999999999999998988854 445589999999999998743  48888887777776666555443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.34  E-value=7.5e-11  Score=115.71  Aligned_cols=171  Identities=11%  Similarity=-0.068  Sum_probs=128.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHH
Q 009757          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (526)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (526)
                      +.++.+.+..++...........+|.+.++ +|.+..+.++..+...++..++.++.|++.||+|+|         ..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r---------~~~~   72 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK---------HILL   72 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH---------HHHH
Confidence            456667777777777777888888887776 899999999999999999999999999999999988         3344


Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhcc
Q 009757          404 IGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE  482 (526)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~  482 (526)
                      .+....++..+.....++.+..++.-++.+...+...+.......+..+ ++|+++.|+......++..++|.+.+++.+
T Consensus        73 ~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  152 (382)
T PRK10091         73 FLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ  152 (382)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence            4555555555555555666655555444333333334455556667766 589999999999999999999999999998


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHH
Q 009757          483 LVGSFQGFLLLTSLLYFLSALFY  505 (526)
Q Consensus       483 ~~g~~~~~~~~~~~~~~~~~~~~  505 (526)
                      ..| ++..|.+.+++.++..+..
T Consensus       153 ~~g-wr~~f~~~~~~~~~~~~~~  174 (382)
T PRK10091        153 EFS-WRYTFLLIAVFNIAVLASI  174 (382)
T ss_pred             hcc-HHHHHHHHHHHHHHHHHHH
Confidence            877 8888888777665554443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.34  E-value=1.2e-10  Score=114.52  Aligned_cols=155  Identities=12%  Similarity=-0.040  Sum_probs=114.9

Q ss_pred             HHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc
Q 009757          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (526)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (526)
                      ...+.....+|.+.++ +|.++.+.++..+...++..+++++.|++.||+|||         ..+..+.++.++..+...
T Consensus        34 ~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr---------~~~~~~~~~~~~~~~~~~  103 (394)
T PRK10213         34 IVEFLPVSLLTPMAQD-LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR---------YVVILFAVLLTLSCLLVS  103 (394)
T ss_pred             HHHHHHHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH---------HHHHHHHHHHHHHHHHHH
Confidence            3344445567777766 899999999999999999999999999999999998         333444444444444444


Q ss_pred             cCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHH
Q 009757          418 AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSL  496 (526)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~  496 (526)
                      ..++.+..+..-++.+...+...+....+..+..| ++|+++.++.....+++..++|.+.+.+.+..| |+..|++.++
T Consensus       104 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~~~~~  182 (394)
T PRK10213        104 FANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WRNVFNAAAV  182 (394)
T ss_pred             HHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHH
Confidence            45566655555444444444455666666777776 689999999999999999999999999999887 8888888776


Q ss_pred             HHHHHHH
Q 009757          497 LYFLSAL  503 (526)
Q Consensus       497 ~~~~~~~  503 (526)
                      +.+++.+
T Consensus       183 l~~~~~l  189 (394)
T PRK10213        183 MGVLCIF  189 (394)
T ss_pred             HHHHHHH
Confidence            6555443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.32  E-value=1.1e-10  Score=115.69  Aligned_cols=175  Identities=14%  Similarity=0.166  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHHhhh-hhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcCh--HHHHHHHHHHH
Q 009757           99 KVVSMLALALALCNAD-RVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK--IIMAWGVALWS  175 (526)
Q Consensus        99 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr--~~l~~~~~~~~  175 (526)
                      +.+....+++++..-. ..........-.+++|++..+...+.-+..+...++++++|++.||+|.|  +++.++.+++.
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~  360 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI  360 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence            3344444444433322 23334445555668999999999999999999999999999999999999  88888888775


Q ss_pred             HHHhhhhh--------ccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHH
Q 009757          176 LATFLTPW--------AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI  247 (526)
Q Consensus       176 ~~~~~~~~--------~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~  247 (526)
                      +..+...+        .  ++-+.+++.-++.|+..|..++...++.++..|+++.+..+|++....-....+||++.+.
T Consensus       361 ~i~~~g~~G~~~~~~g~--~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~  438 (477)
T PF11700_consen  361 IIPLYGLFGFWPSFFGL--KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGL  438 (477)
T ss_pred             HHHHHHHHHhhhcccCc--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55544333        3  6788899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcC-chhHHHHHHHHHHHHHHHHHhh
Q 009757          248 LMSQAG-IFGPFVIFGLSGFLWVLVWLSA  275 (526)
Q Consensus       248 l~~~~g-w~~~f~~~~~~~~~~~~~~~~~  275 (526)
                      +.+..| -|..+....++.++.+++.++.
T Consensus       439 i~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  439 ITDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            998776 8888888877777666655443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.31  E-value=1.5e-11  Score=122.60  Aligned_cols=176  Identities=18%  Similarity=0.177  Sum_probs=154.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhc--ChHHHHHHHHHHHH
Q 009757           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG--GKIIMAWGVALWSL  176 (526)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G--rr~~l~~~~~~~~~  176 (526)
                      +.+....+...+...........+|.+.++.+.+..+.+.+.++..+...++.++.|+++|+..  ++.+..++.++.++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            3455556666666677777788899999999999999999999999999999999999999988  45677788888888


Q ss_pred             HHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-ch
Q 009757          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IF  255 (526)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g-w~  255 (526)
                      +.+.+++.  ++++.++..-.+.|++.|.........+.|..+.++-..+.|+.....+++.++||++++++.+..| |.
T Consensus       378 ~~~~~p~~--~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~  455 (509)
T KOG2504|consen  378 ARLFLPFA--TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD  455 (509)
T ss_pred             HHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence            88889999  9999999999999999999888888899999999999999999999999999999999999988777 99


Q ss_pred             hHHHHHHHHHHHHHHHHHhhc
Q 009757          256 GPFVIFGLSGFLWVLVWLSAT  276 (526)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~  276 (526)
                      ..|+..++..++..+.+++..
T Consensus       456 ~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  456 HAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eehhhcChHHHHHHHHHHHhH
Confidence            999999988887776655543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.31  E-value=1.4e-10  Score=117.86  Aligned_cols=170  Identities=15%  Similarity=0.074  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHH
Q 009757          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (526)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (526)
                      .+++..++............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+|||         ..+..+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~~~   75 (485)
T TIGR00711         6 VLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR---------RLFLISTF   75 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH---------HHHHHHHH
Confidence            44455555555666667778877777 899999999999999999999999999999999998         33444445


Q ss_pred             HHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccch
Q 009757          408 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS  486 (526)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~  486 (526)
                      +..+..+.....++.+..+...++.+...+...+....+..+..| ++|+++.++......+|..++|.+.|++.++.| 
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-  154 (485)
T TIGR00711        76 AFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-  154 (485)
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-
Confidence            555555555555555555555444444444455666667777766 799999999999999999999999999999887 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 009757          487 FQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      |+..|++.+.+.++..++....
T Consensus       155 w~~~f~~~~~~~~~~~~~~~~~  176 (485)
T TIGR00711       155 WRWIFLINVPIGIIVVVVAFFI  176 (485)
T ss_pred             ceehhhhhhHHHHHHHHHHHHH
Confidence            8888887776666555544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.30  E-value=3.6e-10  Score=114.71  Aligned_cols=170  Identities=16%  Similarity=0.094  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHH
Q 009757          327 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF  406 (526)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  406 (526)
                      ..+++..++...-...+..-+|.+.++ +|.+..+.++..+.+.++..++.+..|+++||+|||         ..+..+.
T Consensus         9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk---------~~l~~~~   78 (495)
T PRK14995          9 VIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK---------RLLMLGG   78 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHHH
Confidence            344555566556666677778888777 899999999999999999999999999999999999         3444455


Q ss_pred             HHHHHHHHhhccCchhHHHHHHHHH-HHHHHhhhhhhHH-HHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccc
Q 009757          407 IAPGIALIGLTAAKSPVMASAWLTL-AIGMKSFSHSGFL-VNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVEL  483 (526)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~  483 (526)
                      ....+..+.....++.+..++.-.+ +.+.. ...+... ....+..| ++|+++.|+......+|..+||.+.|.+.++
T Consensus        79 ~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~-~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~  157 (495)
T PRK14995         79 TLFGLASLAAAFSPTASWLIATRALLAIGAA-MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH  157 (495)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            5555555555555666655555333 44333 3333333 34455544 7999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          484 VGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       484 ~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      .| |++.|++...+.++.+++....
T Consensus       158 ~g-wr~~f~i~~~~~~~~~~l~~~~  181 (495)
T PRK14995        158 FY-WGSVFLINVPIVLVVMGLTARY  181 (495)
T ss_pred             CC-hHHHHHHHHHHHHHHHHHHHHh
Confidence            87 9999888776666655554444

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.30  E-value=3.1e-10  Score=111.86  Aligned_cols=170  Identities=13%  Similarity=-0.006  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHH
Q 009757          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (526)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (526)
                      ......+....+.......+|.+.++ +|.+..+.++..+...++..++.++.|++.||+|||         ..+..+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r---------~~l~~~~~   76 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK---------PVAIPGAA   76 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh---------HHHHHHHH
Confidence            33444444455555666778887777 899999999999999999999999999999999988         23334444


Q ss_pred             HHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccch
Q 009757          408 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS  486 (526)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~  486 (526)
                      ...+........++.+......++.....+...+....+..+..| ++|+++.|+.+....++..++|.+.+.+.+..| 
T Consensus        77 ~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-  155 (392)
T PRK10473         77 LFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-  155 (392)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-
Confidence            444444444444444443333333222233334455566666665 799999999999999999999999998888776 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 009757          487 FQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      |+..+++.+++.++..++.+..
T Consensus       156 ~~~~~~~~~~~~~i~~~~~~~~  177 (392)
T PRK10473        156 WQSLFYTMAAMGILVLLLSLFI  177 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888777666555554333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.30  E-value=4.2e-11  Score=121.84  Aligned_cols=163  Identities=20%  Similarity=0.066  Sum_probs=109.4

Q ss_pred             hhhcchhhhhhhcCCccchhhH------------HHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhc
Q 009757          117 VMSVAIVPLSLAHGWSRSFSGI------------VQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA  184 (526)
Q Consensus       117 ~~~~~~~~l~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  184 (526)
                      ......|.+.++.|.+....+.            ...+..++..++.++.++++||+|||++++++.++.+++.++.++.
T Consensus       306 ~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~  385 (502)
T TIGR00887       306 GVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA  385 (502)
T ss_pred             ccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            4444577777888876543221            1233445666788899999999999999998888877776655543


Q ss_pred             cc--cchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhh----------c
Q 009757          185 AD--TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ----------A  252 (526)
Q Consensus       185 ~~--~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~----------~  252 (526)
                      ..  ++...+...-+...++..+..+....+.+|.+|.+.|+++.++......+|.++++.+.+.+.+.          .
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  465 (502)
T TIGR00887       386 YNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGI  465 (502)
T ss_pred             HHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccc
Confidence            10  11111111111122222233456677789999999999999999999999999999999988773          3


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhccCCC
Q 009757          253 GIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (526)
Q Consensus       253 gw~~~f~~~~~~~~~~~~~~~~~~~~~~  280 (526)
                      ++...|++.+++.++..+.. ++.||++
T Consensus       466 ~~~~~~~i~~~~~~~~~i~~-~~lpEt~  492 (502)
T TIGR00887       466 WMGHVLEIFALFMFLGILFT-LLIPETK  492 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHh-eEeccCC
Confidence            45667888877776665544 4556654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.30  E-value=1.4e-10  Score=116.68  Aligned_cols=175  Identities=13%  Similarity=0.083  Sum_probs=124.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHH-HHhhcCccchhHHHHH
Q 009757          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLTRKILQ  402 (526)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~~~~~~~~~~~~~~~~  402 (526)
                      +.++.++...+...++++++..+++.|+++.+|++..+++++...+.....+..+++|+++|| +|||         ..+
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r---------~~~   84 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK---------RTI   84 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH---------HHH
Confidence            346666777778889999999999999999899999999998888888888888899999999 9999         233


Q ss_pred             HHHHHHHHHHHHhhccCch-hHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-c--chhhHHHHHHHHHhHHHHHHHHHHh
Q 009757          403 SIGFIAPGIALIGLTAAKS-PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-Q--YSGVLHGISNTAGTFAAILGTVGAG  478 (526)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~g~~~g~~~~~~~lg~~~~~~~~g  478 (526)
                      ..+.++..++.+....... .....+...+.....+...+.......+..| +  +|+.++++.+...++|..++|.+.|
T Consensus        85 ~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g  164 (489)
T PRK10207         85 VLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP  164 (489)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            3444444443333333222 2222222333233334444555667777765 3  4577899999999999999999999


Q ss_pred             hhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          479 FFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       479 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      ++.++.| |+..|++.++..+++++.+...
T Consensus       165 ~l~~~~g-w~~~F~i~~i~~~~~~~~~~~~  193 (489)
T PRK10207        165 VIADKFG-YSVTYNLCGAGLIIALLVYFAC  193 (489)
T ss_pred             HHHHhhC-hHHHHHHHHHHHHHHHHHHHHc
Confidence            9999987 8888888766555555444443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.29  E-value=2.4e-09  Score=103.40  Aligned_cols=316  Identities=14%  Similarity=0.039  Sum_probs=185.9

Q ss_pred             HHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcC
Q 009757          140 QSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP  219 (526)
Q Consensus       140 ~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~  219 (526)
                      .++-+....+..++.+.+.|+.|.|+.++++...+....+.+.+   +|-+.++++..+.|+|.+..+..--.++++..+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~---~N~y~~yfssallG~Gaallw~GqG~ylt~~st  132 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF---PNSYYLYFSSALLGFGAALLWTGQGGYLTSNST  132 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh---cchHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence            67777888899999999999999999999999999998887766   467888999999999999999999999999999


Q ss_pred             cchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc--------Cch-h----------HHHHHHHHHHHHHHHHHhhccCCC
Q 009757          220 QTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--------GIF-G----------PFVIFGLSGFLWVLVWLSATSSTP  280 (526)
Q Consensus       220 ~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~--------gw~-~----------~f~~~~~~~~~~~~~~~~~~~~~~  280 (526)
                      ++++.+..++.......+.++|..+...+...-        +-+ .          ...+.+++..+..+...-.... |
T Consensus       133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~-p  211 (461)
T KOG3098|consen  133 RETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFL-P  211 (461)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeec-C
Confidence            999999999999999999988877654442211        111 0          1111111111111111111111 1


Q ss_pred             CCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--hcCC
Q 009757          281 DRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFV--YHID  358 (526)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s  358 (526)
                      .+..   ..+++            ..+....+..+..-+++++|+.+.+....+..+.....+....|..+.-.  .+.+
T Consensus       212 ~~~~---~~~~~------------~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n  276 (461)
T KOG3098|consen  212 SKDV---VNCKS------------SSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSN  276 (461)
T ss_pred             ccch---hhhhh------------hccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCc
Confidence            1000   00000            00000001112223456777777776666665555555555566555432  2222


Q ss_pred             c-chhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhh-ccC-----------------
Q 009757          359 L-RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL-TAA-----------------  419 (526)
Q Consensus       359 ~-~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------------  419 (526)
                      . ...++.....+++..++.+..+.+.+|..+.+..      ..+.++..+..+..++. ...                 
T Consensus       277 ~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~------~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~  350 (461)
T KOG3098|consen  277 TTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK------PTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFT  350 (461)
T ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC------cchhHHHHHHHHHHHHHhccccccCCCCCCcccccccc
Confidence            2 2234444455566666667777777776555322      22223332222222211 100                 


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhh
Q 009757          420 KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFF  480 (526)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l  480 (526)
                      +......+..++.+..-.......+.......|++|.++.++.-.-..++..++-......
T Consensus       351 ~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  351 PSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             cchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            0112222222233333445556667778888899999999988888888877766655543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.29  E-value=1.1e-10  Score=111.40  Aligned_cols=168  Identities=14%  Similarity=0.107  Sum_probs=139.7

Q ss_pred             HhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchH
Q 009757          111 CNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL  190 (526)
Q Consensus       111 ~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  190 (526)
                      +.++++ +......+-++-+.++..+|.+.+...+.-++...+..++.+|+|.|+.++++.+++++=.++++++  ++.+
T Consensus       237 ~vfdqq-f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~--~~~~  313 (412)
T PF01306_consen  237 DVFDQQ-FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA--TNPW  313 (412)
T ss_dssp             HHHHHH-HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHH
T ss_pred             HHHHHH-HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh--cchH
Confidence            334443 4444444444445566789999999999999999999999999999999999999999999999999  9999


Q ss_pred             HHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHH-HhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 009757          191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIA-MGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWV  269 (526)
Q Consensus       191 ~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~  269 (526)
                      .+.+.+.+.|+-.+....+...|+++.+|+|..++...+. +...++|..+.+.++|.+.++.|.+..|++.+.+.++..
T Consensus       314 ~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~  393 (412)
T PF01306_consen  314 VISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFT  393 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988888888884 788999999999999999999999999999999888877


Q ss_pred             HHHHhhccCCCC
Q 009757          270 LVWLSATSSTPD  281 (526)
Q Consensus       270 ~~~~~~~~~~~~  281 (526)
                      ++..+..+++++
T Consensus       394 li~~f~l~~~~~  405 (412)
T PF01306_consen  394 LISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHS--SSS
T ss_pred             HHheeeecCCCc
Confidence            777777655443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.29  E-value=7.1e-11  Score=118.08  Aligned_cols=163  Identities=11%  Similarity=-0.033  Sum_probs=112.4

Q ss_pred             hhhcchhhhhhh-cCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHH---HHHhhhhhccccchHHH
Q 009757          117 VMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS---LATFLTPWAADTSLLAL  192 (526)
Q Consensus       117 ~~~~~~~~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~---~~~~~~~~~~~~~~~~l  192 (526)
                      ......|.+.++ .|.++.+.++....+.++..++.++.|+++||+++++....+.....   ++.+.+......+.+..
T Consensus       269 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T TIGR00712       269 GVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVD  348 (438)
T ss_pred             HHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            334455666554 68999999999999999999999999999999975432222322221   22222222211234444


Q ss_pred             HHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhH-HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 009757          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSG-NAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLV  271 (526)
Q Consensus       193 ~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G-~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~  271 (526)
                      .+..++.|++.............|.+|+++|+.+.|+.+....+| .+++|.+.+.+.++.||...|++.++..++..+.
T Consensus       349 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  428 (438)
T TIGR00712       349 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  428 (438)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            444555555433323333456789999999999999998887776 5789999999999999999999888877777776


Q ss_pred             HHhhccCC
Q 009757          272 WLSATSST  279 (526)
Q Consensus       272 ~~~~~~~~  279 (526)
                      .++..+|+
T Consensus       429 ~~~~~~~~  436 (438)
T TIGR00712       429 LIVVMIGE  436 (438)
T ss_pred             HHHHHhhc
Confidence            66666554

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.29  E-value=6.1e-11  Score=118.79  Aligned_cols=123  Identities=17%  Similarity=0.184  Sum_probs=106.3

Q ss_pred             ccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhH
Q 009757          132 SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMN  211 (526)
Q Consensus       132 s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~  211 (526)
                      +..+.+++.++..++..++.+++|+++||+|+|+++.++.++.+++.++..+.. ++.+.+++..++.|++.+...+...
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~  333 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-SNLPLILVLIILAGFGQNFVTGLVW  333 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566778888888999999999999999999999999999988888877766652 4567777888899999999899999


Q ss_pred             HHHhhhcC-------cchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCch
Q 009757          212 NMVARWFP-------QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (526)
Q Consensus       212 ~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~  255 (526)
                      ++++|..|       ++++|.+.++.+....+|..+++.+.+.+.+..||.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       334 ALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99998865       456799999999999999999999999998877763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11043 putative transporter; Provisional

Probab=99.29  E-value=2.8e-10  Score=112.62  Aligned_cols=163  Identities=12%  Similarity=0.082  Sum_probs=108.9

Q ss_pred             HHHHHHHHHhHHHH--HHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHH
Q 009757          337 SWGFFVILSWMPIY--FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI  414 (526)
Q Consensus       337 ~~~~~~~~~~~~~~--~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (526)
                      ...+.....+.|.+  +++.+|.+..+.++..+...++..++.++.|++.||++||+         .+..+.....+..+
T Consensus        16 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~---------~~~~~~~~~~~~~~   86 (401)
T PRK11043         16 MLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKP---------VLLAGLSLFALGSL   86 (401)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcH---------HHHHHHHHHHHHHH
Confidence            33344444444543  44458999999999999999999999999999999999982         33333333334343


Q ss_pred             hhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHH
Q 009757          415 GLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLL  493 (526)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~  493 (526)
                      .....++.+...+..++.....+...+.......+..+ ++++...+..+....++..++|.+.+++.+..| ++..|++
T Consensus        87 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~  165 (401)
T PRK11043         87 GMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFAT  165 (401)
T ss_pred             HHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHH
Confidence            33344444444433332222222223334455556665 578888899888899999999999999999887 8888887


Q ss_pred             HHHHHHHHHHHHHHHh
Q 009757          494 TSLLYFLSALFYIIFS  509 (526)
Q Consensus       494 ~~~~~~~~~~~~~~~~  509 (526)
                      .+++.++..++.+..+
T Consensus       166 ~~~~~~~~~~~~~~~~  181 (401)
T PRK11043        166 LFAITLLLILPTLRLK  181 (401)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            7777666655554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.29  E-value=2e-10  Score=112.18  Aligned_cols=148  Identities=11%  Similarity=0.000  Sum_probs=104.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHH
Q 009757          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI  404 (526)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  404 (526)
                      .++..++..++.+.....+..+.|.++++.+|++..+.+++.+...++..++.++.|++.||+|+|         ..+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~   72 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR---------YTTTL   72 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch---------HHHHH
Confidence            356666777777777788888899777777999999999999999999999999999999999998         23334


Q ss_pred             HHHHHHHHHHhhccCc-hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhcc
Q 009757          405 GFIAPGIALIGLTAAK-SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE  482 (526)
Q Consensus       405 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~  482 (526)
                      +.+...+..+.....+ +.+......++.+...+. ......+..+..| ++|+++.++.....++|..+++.+.+.+.+
T Consensus        73 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886        73 SLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4444444444444444 444443333332222222 2334455666666 689999999998888888888877776664

>TIGR01272 gluP glucose/galactose transporter

Probab=99.29  E-value=2.6e-10  Score=107.71  Aligned_cols=157  Identities=16%  Similarity=0.139  Sum_probs=120.0

Q ss_pred             HHHHHHHHHhhhhhhhhcchhhhhh---hcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHh
Q 009757          103 MLALALALCNADRVVMSVAIVPLSL---AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (526)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~  179 (526)
                      +..+..++............+.+.+   .+|.++.+.++..+.+..+..++.+..+++.||+|+|+.+.++..+..++.+
T Consensus       144 l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~  223 (310)
T TIGR01272       144 LGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSI  223 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            3344444444344444444455443   3689999999999999999999999999999999999999888888888776


Q ss_pred             hhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHH
Q 009757          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (526)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~  259 (526)
                      +....  ++...+ .+-++.|++.+..+|...+...+..|+ +.+.+.++. ....+|..++|++.|.+.+..|.+..|+
T Consensus       224 l~~~~--~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       224 GAALT--HGYVAM-WFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             HHHHc--CCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence            66555  443333 355688999999999999999998864 456667775 5677999999999999999999998887


Q ss_pred             HHHHH
Q 009757          260 IFGLS  264 (526)
Q Consensus       260 ~~~~~  264 (526)
                      +..+.
T Consensus       299 v~~~~  303 (310)
T TIGR01272       299 LPVPC  303 (310)
T ss_pred             HHHHH
Confidence            55443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.29  E-value=3e-10  Score=112.44  Aligned_cols=167  Identities=13%  Similarity=0.057  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHH
Q 009757          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA  408 (526)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  408 (526)
                      ..+.+++.+.-...+....| .+++.+|++..+.+++.+...++..++.++.|++.||+|||         ..+..++++
T Consensus        13 ~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r---------~~~~~~~~~   82 (412)
T TIGR02332        13 LFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR---------RWIAGIMVL   82 (412)
T ss_pred             HHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH---------HHHHHHHHH
Confidence            33444444444444555555 56666999999999999999999999999999999999999         334445555


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccc----
Q 009757          409 PGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVEL----  483 (526)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~----  483 (526)
                      .++..+.....++.+..+..-++.+...+...+....+..+..| ++|+++.|+.+....+|..+++.+.+++.+.    
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            55555544455555544444433333333444555666777776 6899999999999999999999999988742    


Q ss_pred             --cchhHHHHHHHHHHHHHHHHHHH
Q 009757          484 --VGSFQGFLLLTSLLYFLSALFYI  506 (526)
Q Consensus       484 --~g~~~~~~~~~~~~~~~~~~~~~  506 (526)
                        .| |+..|.+.++..++..++..
T Consensus       163 ~~~g-wr~~f~~~~~~~l~~~~~~~  186 (412)
T TIGR02332       163 ALKG-WQWLFLLEGFPSVILGVMTW  186 (412)
T ss_pred             Cccc-hhHHHHHHHHHHHHHHHHHh
Confidence              34 89999887776655444443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.29  E-value=1.7e-10  Score=115.24  Aligned_cols=144  Identities=17%  Similarity=0.093  Sum_probs=104.2

Q ss_pred             hhhhhhhhcchhhhhhh-cCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHh-hh-hhccccc
Q 009757          112 NADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF-LT-PWAADTS  188 (526)
Q Consensus       112 ~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~-~~-~~~~~~~  188 (526)
                      ...........|.+.++ +|.+..+.++....+.++..++.+++|+++||+|||+.+.++.++..+... .. .....++
T Consensus       251 ~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (434)
T PRK15075        251 TVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPS  330 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            33333445556776654 799999999999999999999999999999999999988876554433221 11 1111144


Q ss_pred             hHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHh-hhhhHHHHHHHHHHHHHhhcCch
Q 009757          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMG-GFTSGNAIGLVLSPILMSQAGIF  255 (526)
Q Consensus       189 ~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~ig~~l~~~l~~~~gw~  255 (526)
                      +..+.+..++.|++.+...+....++.|.+|+++|+.+.++... +..++..++|.+.+++.++.|++
T Consensus       331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        331 FARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            44444555666677776667777889999999999999998644 44456788999999999988864

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.29  E-value=2.5e-10  Score=110.72  Aligned_cols=160  Identities=11%  Similarity=-0.012  Sum_probs=107.8

Q ss_pred             HHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc
Q 009757          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (526)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (526)
                      .....+...+|.+.+| +|.+..+.+++.+.+.++..++++..|++.||+|||         .+....+...........
T Consensus         5 ~~~~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr---------~~~~~~~~~~~~~~~~~~   74 (368)
T TIGR00903         5 AIWVTFSPVLSLVAED-IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKR---------WFLFGSLATFAAAAGRLL   74 (368)
T ss_pred             HHHHHHHhhHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch---------HHHHHHHHHHHHHHHHHH
Confidence            3445566677777776 899999999999999999999999999999999977         122222222222221112


Q ss_pred             cCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHH
Q 009757          418 AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL  497 (526)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~  497 (526)
                      ...+.+..+..-++.+...+...+......+..++++|+++.++.+....+|..+++.+.+++.+..| |+..|++.+++
T Consensus        75 ~~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l  153 (368)
T TIGR00903        75 DPFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAV  153 (368)
T ss_pred             HhccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHH
Confidence            21234333333333222222333333334444455899999999999999999999999999998887 99999887777


Q ss_pred             HHHHHHHHHHH
Q 009757          498 YFLSALFYIIF  508 (526)
Q Consensus       498 ~~~~~~~~~~~  508 (526)
                      .++..+++...
T Consensus       154 ~~~~~~~~~~~  164 (368)
T TIGR00903       154 AAAGIILVLAA  164 (368)
T ss_pred             HHHHHHHHHHH
Confidence            66655544443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.28  E-value=4.6e-09  Score=101.71  Aligned_cols=371  Identities=14%  Similarity=0.016  Sum_probs=203.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhcchhhhhhhcCC-ccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHh
Q 009757          101 VSMLALALALCNADRVVMSVAIVPLSLAHGW-SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (526)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~  179 (526)
                      ...+...+++.....-++....+.+..+..- +---.+...-.-.+..++.++..|.+.||..|.++...+.+.--++..
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence            3456777888888888888888887776632 333344444455667788889999999999999887766544332222


Q ss_pred             ----hhh--hcccc-----c--hHHHHHHHHHhhhhccc-hhhhhHHHHhhhc------CcchhhHHHHHHHhhhhhHHH
Q 009757          180 ----LTP--WAADT-----S--LLALLAMRAVVGLAEGV-ALPAMNNMVARWF------PQTERARAVAIAMGGFTSGNA  239 (526)
Q Consensus       180 ----~~~--~~~~~-----~--~~~l~~~r~l~Gig~g~-~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~  239 (526)
                          +..  +....     +  .+.+++.-.+.|.-.-. ......++=.||.      +++.+.+.++.+.-.-.+..+
T Consensus        84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl  163 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL  163 (432)
T ss_pred             HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence                211  11101     1  11222222222221111 1112222223442      456678888888888889999


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhc----cCCCCCCCCCChhHHHHHHHhcccccccCC-------CC
Q 009757          240 IGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT----SSTPDRHPQISKYELEYILREKQKPLLMGN-------KH  308 (526)
Q Consensus       240 ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  308 (526)
                      ++|++.|.+.+..+.+....+.++..++..++=+++.    +..|+-..+.++++.+..............       .+
T Consensus       164 laPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (432)
T PF06963_consen  164 LAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWN  243 (432)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHHH
Confidence            9999999999988988888888877776655433322    122211111111000000000000000000       00


Q ss_pred             CCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHH
Q 009757          309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI  388 (526)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~  388 (526)
                      .-.....+|+..++.|.++. .+...+.++...++......|+... |+++...|.+-+...+.++.+.++..++.+|+|
T Consensus       244 ~~~~~~~~w~~Y~~q~vfla-s~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riG  321 (432)
T PF06963_consen  244 PLRTIIRGWRTYFRQPVFLA-SFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIG  321 (432)
T ss_pred             HHHHHhccHHHHHhCHHHHH-HHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            00112344556666665544 4444444555666778888999994 999999999999999999999999999999998


Q ss_pred             hhcCccchhHHHHHHHHHHHHHHHHHhhccCc----hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHH
Q 009757          389 QRGTSVTLTRKILQSIGFIAPGIALIGLTAAK----SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISN  463 (526)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~  463 (526)
                      ..+.-....  .....++ ..++..+.....+    +...++..+.+.-.+.-..-.....+++|..| ++||...|+.+
T Consensus       322 lvr~G~~~l--~~q~~~L-~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~  398 (432)
T PF06963_consen  322 LVRAGLWSL--WWQWVCL-ALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQN  398 (432)
T ss_pred             chhhHHHHH--HHHHHHH-HHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHH
Confidence            763211100  1111111 1111111111111    11111111222111111222333444555444 69999999999


Q ss_pred             HHHhHHHHHHHHH
Q 009757          464 TAGTFAAILGTVG  476 (526)
Q Consensus       464 ~~~~lg~~~~~~~  476 (526)
                      ...++...+.-.+
T Consensus       399 sl~~lf~ll~~~~  411 (432)
T PF06963_consen  399 SLQSLFELLSFVL  411 (432)
T ss_pred             HHHHHHHHHHHHH
Confidence            9998887765544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.27  E-value=7.8e-11  Score=115.50  Aligned_cols=150  Identities=14%  Similarity=0.011  Sum_probs=107.7

Q ss_pred             HHHhhhhhhhhcchhhh-hhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcC-hHHHH-HH-HHHHHHHHhhhhhc
Q 009757          109 ALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMA-WG-VALWSLATFLTPWA  184 (526)
Q Consensus       109 ~~~~~~~~~~~~~~~~l-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l~-~~-~~~~~~~~~~~~~~  184 (526)
                      +.............|.+ .+++|.+..+.+++.+...++..++.++.|++.||.++ |+... .. .....++.......
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (379)
T TIGR00881       226 VFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLN  305 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcC
Confidence            33333333444445554 45679999999999999999999999999999998643 33222 21 12222222222221


Q ss_pred             cccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHH
Q 009757          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (526)
Q Consensus       185 ~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f  258 (526)
                      ...+.+..+++.++.|+......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||++.|
T Consensus       306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       306 PAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             cchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            11455566677777887666666667788999999999999999999999999999999999999999998754

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.27  E-value=8.7e-09  Score=105.88  Aligned_cols=158  Identities=18%  Similarity=0.244  Sum_probs=128.7

Q ss_pred             hcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhH-hcChHHHHHHHHHHHHHHhhhhhcccc------chHH
Q 009757          119 SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAADT------SLLA  191 (526)
Q Consensus       119 ~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~------~~~~  191 (526)
                      ..+...+.+.+|.+.+....+...+.....+.++++|+++|+ +|++++++++.++..++.++.++...+      ....
T Consensus         8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            334455566789999999999999999999999999999997 599999999999999999887765211      1234


Q ss_pred             HHHHHHHhhhhccchhhhhHHHHhhhcCcc---hhhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-------CchhHHHHH
Q 009757          192 LLAMRAVVGLAEGVALPAMNNMVARWFPQT---ERARAVAIAMGGFTSGNAIGLVLSPILMSQA-------GIFGPFVIF  261 (526)
Q Consensus       192 l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~-------gw~~~f~~~  261 (526)
                      .+++-.+.++|.|++-+...+...|.++++   +|...+.++..+.++|+++++.+.+++.+..       +|...|.+.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~  167 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP  167 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence            667788889999999999999999999754   4778899999999999999999999886443       699999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 009757          262 GLSGFLWVLVWLSAT  276 (526)
Q Consensus       262 ~~~~~~~~~~~~~~~  276 (526)
                      +++.++..++.....
T Consensus       168 ~i~m~ia~lvf~~g~  182 (654)
T TIGR00926       168 AILMILALIVFMAGS  182 (654)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            888887776655443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.26  E-value=1.8e-10  Score=114.09  Aligned_cols=154  Identities=14%  Similarity=0.032  Sum_probs=120.0

Q ss_pred             hhhh-hhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhcc---ccchHHHHHHHH
Q 009757          122 IVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA---DTSLLALLAMRA  197 (526)
Q Consensus       122 ~~~l-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~  197 (526)
                      .|.+ .+++|.++.+.++......++..++.++.|++.||+|+|+.+.++.++.+++.++..+..   .++++.+++..+
T Consensus       238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK15402        238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS  317 (406)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            4544 566899999999988888889999999999999999999999998888877777665431   135667778889


Q ss_pred             HhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhc
Q 009757          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (526)
Q Consensus       198 l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  276 (526)
                      +.|++.+...+......... ++++|++..+.++....+|..+|+.+++.+.+..++....+..++..++..+......
T Consensus       318 ~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK15402        318 LYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFL  395 (406)
T ss_pred             HHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999888777666655444 4589999999999999999999999999998888877666665555555444443333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.25  E-value=2.7e-10  Score=111.70  Aligned_cols=157  Identities=11%  Similarity=0.073  Sum_probs=114.5

Q ss_pred             HHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccC
Q 009757          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA  419 (526)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (526)
                      .......+|.+.++ +|.+..+.+++.+...++..++.++.|++.||++||         ..+..+.+...+........
T Consensus         7 ~~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~i~~~~~~~~   76 (377)
T PRK11102          7 IDMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRK---------PVILGGTLVFALAAVACALA   76 (377)
T ss_pred             HHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCCh---------HHHHHHHHHHHHHHHHHHHH
Confidence            34455777888877 899999999999999999999999999999999988         33344444444444444444


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Q 009757          420 KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLY  498 (526)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  498 (526)
                      ++.+......++.....+...+....+..+..| ++|+++.++.+....+|..++|.+.+.+.+..| ++..|++.+++.
T Consensus        77 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~  155 (377)
T PRK11102         77 QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAA  155 (377)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHH
Confidence            444444444444333344444555666667766 689999999999999999999999999999877 888888777766


Q ss_pred             HHHHHHHHH
Q 009757          499 FLSALFYII  507 (526)
Q Consensus       499 ~~~~~~~~~  507 (526)
                      ++..++...
T Consensus       156 ~~~~~~~~~  164 (377)
T PRK11102        156 ILAAALVFF  164 (377)
T ss_pred             HHHHHHHHH
Confidence            665554433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.25  E-value=3.7e-10  Score=111.04  Aligned_cols=171  Identities=15%  Similarity=0.065  Sum_probs=116.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHH
Q 009757          323 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ  402 (526)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~  402 (526)
                      +|+++.+.+..++..++........+.+.++ ++.+..+.+++.+.+.+...+..++.|++.||++||+         ++
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~---------vl   71 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGR---------VM   71 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCch---------hh
Confidence            4567777777777777666666666666665 7888889999999999999999999999999999993         22


Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhc
Q 009757          403 SIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV  481 (526)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~  481 (526)
                      ..+..+.++..+......+.   +...++.+...+...+....++.+..| ++|++++|+.+....++..+||.++|.+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         72 FIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222222221112222   222223333445556677777777776 69999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          482 ELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       482 ~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      +..  +...+.+.+.+.+++.+....+
T Consensus       149 ~~~--~~~~~~i~~~~~~~~~~~~~~l  173 (393)
T PRK11195        149 DPH--AEAALAVCALIYLLAALFNLFI  173 (393)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence            863  5555555555444444433333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.24  E-value=9.8e-10  Score=110.80  Aligned_cols=163  Identities=10%  Similarity=0.071  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHH
Q 009757          334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL  413 (526)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (526)
                      ++.....+....+.|.+.++ +|++..+.+++.+...++..++.++.|++.||+|+|         ..+..+.+..++..
T Consensus        46 ~~~~~~~~~~~~~~~~l~~~-~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r---------~~~~~~~~~~~~~~  115 (476)
T PLN00028         46 FTCFVSTFAAAPLLPIIRDN-LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR---------YGSAFLLMLTAPAV  115 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------HHHHHHHHHHHHHH
Confidence            33333444455555666555 899999999998888899999999999999999998         23333444444444


Q ss_pred             HhhccCchhHHHHHHH-HHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhcc----c----
Q 009757          414 IGLTAAKSPVMASAWL-TLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE----L----  483 (526)
Q Consensus       414 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~----~----  483 (526)
                      +.....++.+...+.. +.+.+.. ... ....++.+..| ++||.+.|+.+...++|..+++.+.+.+.+    .    
T Consensus       116 ~~~~~~~s~~~l~~~r~l~G~~~~-~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~  193 (476)
T PLN00028        116 FCMSLVSSATGFIAVRFFIGFSLA-TFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPS  193 (476)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHH-hhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            4444444444443332 2333322 222 23344566666 699999999998888888888776665532    1    


Q ss_pred             -cchhHHHHHHHHHHHHHHHHHHHHHh
Q 009757          484 -VGSFQGFLLLTSLLYFLSALFYIIFS  509 (526)
Q Consensus       484 -~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (526)
                       .| |+..|++.+++.++..++.+++.
T Consensus       194 ~~g-Wr~~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        194 FTA-WRIAFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             hhh-hHHHHHHHHHHHHHHHHHHHHHc
Confidence             24 88999988887766665555543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.23  E-value=4.5e-10  Score=111.00  Aligned_cols=148  Identities=17%  Similarity=0.110  Sum_probs=107.8

Q ss_pred             hhhhhhhcCCccchhhHHHHHHH-HHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhh---hhccccchHHHHHHH-
Q 009757          122 IVPLSLAHGWSRSFSGIVQSSFL-WGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLLALLAMR-  196 (526)
Q Consensus       122 ~~~l~~~~~~s~~~~g~~~s~~~-~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~~r-  196 (526)
                      .+.+.+++|.++.+++++.+... ++..++.+++|++.||+|+|+.+.++.++..+..+.+   ++.. ++.+.+++.- 
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~  311 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP-KHLWTMALAIG  311 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHH
Confidence            34566778999999999986654 5688999999999999999998887777666554433   3331 3556555554 


Q ss_pred             ---HHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 009757          197 ---AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL  273 (526)
Q Consensus       197 ---~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  273 (526)
                         +..|++.+...+....++.+.+|.++    .++.+...++|..+++.++|.+.+.+||+..|.+.++++++..++..
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence               34556666667777777777776554    45555566778877778899999999999999998888777655544


Q ss_pred             h
Q 009757          274 S  274 (526)
Q Consensus       274 ~  274 (526)
                      .
T Consensus       388 ~  388 (402)
T PRK11902        388 L  388 (402)
T ss_pred             H
Confidence            3

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.22  E-value=9.5e-10  Score=108.51  Aligned_cols=165  Identities=12%  Similarity=0.003  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHH
Q 009757          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA  408 (526)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  408 (526)
                      ..+..++...........+|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+         .+..+...
T Consensus        13 ~~~~~~~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~---------~~~~~~~~   82 (394)
T PRK11652         13 LVLLVAVGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRP---------VILVGMSI   82 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH---------HHHHHHHH
Confidence            3344444444445555567777766 8999999999999999999999999999999999982         23333333


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchh
Q 009757          409 PGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSF  487 (526)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~  487 (526)
                      ..+..+.....++.+......++.....+...+.......+..+ ++++.+.+..+....++..++|.+.+.+.+..| |
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~  161 (394)
T PRK11652         83 FILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-W  161 (394)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-h
Confidence            33333333334444444433333222222333344445556555 688999999999999999999999999998877 8


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 009757          488 QGFLLLTSLLYFLSALF  504 (526)
Q Consensus       488 ~~~~~~~~~~~~~~~~~  504 (526)
                      +..|.+.+++.++..+.
T Consensus       162 ~~~f~~~~~~~~~~~~~  178 (394)
T PRK11652        162 RACYLFLLLLGAGVTFS  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888776655544433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.22  E-value=7.2e-10  Score=107.89  Aligned_cols=167  Identities=17%  Similarity=0.215  Sum_probs=129.1

Q ss_pred             HHhhhhhhhhcchhhhhhhcC-CccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccc
Q 009757          110 LCNADRVVMSVAIVPLSLAHG-WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS  188 (526)
Q Consensus       110 ~~~~~~~~~~~~~~~l~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  188 (526)
                      +.......+....+.+.++.| .+....|.+.++..+.-.+.-...+++..|+|.|+++.++.+..++=..+++... ++
T Consensus       218 l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~-~~  296 (400)
T PF03825_consen  218 LIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS-DP  296 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence            334444445555566677777 6777788888888888889999999999999999999999999999888877762 23


Q ss_pred             hHHH----HHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHh-hhhhHHHHHHHHHHHHHhhcCch------hH
Q 009757          189 LLAL----LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMG-GFTSGNAIGLVLSPILMSQAGIF------GP  257 (526)
Q Consensus       189 ~~~l----~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~ig~~l~~~l~~~~gw~------~~  257 (526)
                      .+..    ++...++|+..+..+.+...++.+..|++.|+++.++++. ..++|..+|..++|++.+++|-+      ..
T Consensus       297 ~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~  376 (400)
T PF03825_consen  297 WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAV  376 (400)
T ss_pred             cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence            3332    3335679999999999999999999999999999999876 46899999999999999987644      45


Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q 009757          258 FVIFGLSGFLWVLVWLSATS  277 (526)
Q Consensus       258 f~~~~~~~~~~~~~~~~~~~  277 (526)
                      +.+.+++.++..++..++.+
T Consensus       377 ~~v~a~~~~~~~~~f~~~fk  396 (400)
T PF03825_consen  377 FLVFAVMALVILVLFVILFK  396 (400)
T ss_pred             HHHHHHHHHHHHHHHHhhcc
Confidence            55566655555555444433

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=99.21  E-value=2.7e-09  Score=97.52  Aligned_cols=363  Identities=12%  Similarity=0.031  Sum_probs=210.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHh-----HhcChHHHHH-H
Q 009757           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD-----YYGGKIIMAW-G  170 (526)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d-----r~Grr~~l~~-~  170 (526)
                      ....+..+.+.+.+++...+... .+|.+.+.-|.|.++.+...-+ +..+ ..-++|.++.|     |+||||.-++ +
T Consensus        29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~a-y~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~  105 (510)
T KOG3574|consen   29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFA-YWPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPC  105 (510)
T ss_pred             hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhh-hhHH-HHHHHHHhhhHHHHHHhhccccceeeeh
Confidence            34456666778888888888888 8999999888888887654332 2232 33678899999     9999985432 2


Q ss_pred             HHHHHHHHhhhhhcc---------ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHH
Q 009757          171 VALWSLATFLTPWAA---------DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIG  241 (526)
Q Consensus       171 ~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig  241 (526)
                      ..+.+..+.+.+.-.         .++...+...-++.-+..+....+...+.-....+++.|.+......+.+.|.++|
T Consensus       106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~  185 (510)
T KOG3574|consen  106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG  185 (510)
T ss_pred             HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence            222222222222211         13334444455667777888889999999999999999999988888888888887


Q ss_pred             HHHHHHHHh-------hcCch---------hHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccC
Q 009757          242 LVLSPILMS-------QAGIF---------GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMG  305 (526)
Q Consensus       242 ~~l~~~l~~-------~~gw~---------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (526)
                      ..+.-.+-.       ..+|.         ..+++.+.+.++...+..+..+|.+++..    +               +
T Consensus       186 ~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~----~---------------e  246 (510)
T KOG3574|consen  186 NVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVD----E---------------E  246 (510)
T ss_pred             cceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhh----h---------------h
Confidence            765433322       11222         23455566666665555555555443311    0               0


Q ss_pred             CCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHH
Q 009757          306 NKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD  385 (526)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~d  385 (526)
                      .+...+...+-++++++-|.+..+.......-.++.+-....+.-+.| +|.+..+.+++..+..-.+++.....|++..
T Consensus       247 ~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta  325 (510)
T KOG3574|consen  247 LELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLVPLQIALPLYIGKWTA  325 (510)
T ss_pred             hhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehhhHHHhhhhhheeecC
Confidence            111111223356678888888888888787788888888888888888 7999999887765444444444444443322


Q ss_pred             HHHhhcCccchhHHHHHHHHHHHHHHHH-HhhccCch-----h-HHHHHHH---HHHHHHHhhhhhhHHHHHHhhc-ccc
Q 009757          386 MLIQRGTSVTLTRKILQSIGFIAPGIAL-IGLTAAKS-----P-VMASAWL---TLAIGMKSFSHSGFLVNLQEIA-PQY  454 (526)
Q Consensus       386 r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~  454 (526)
                      .   ++...+..+....-+........+ ........     + ...+..+   .+..++.........+.-+.+. |..
T Consensus       326 ~---~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~i  402 (510)
T KOG3574|consen  326 G---PRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAI  402 (510)
T ss_pred             C---CCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccc
Confidence            1   111111111111111111111111 11111111     1 1111111   1111221111222223333444 478


Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHhhhccccc
Q 009757          455 SGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (526)
Q Consensus       455 ~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g  485 (526)
                      .|+.+.+.|+..++|+-.-..+..++.|..+
T Consensus       403 ggTymTlLNTLsnLGg~wp~tv~l~l~D~lt  433 (510)
T KOG3574|consen  403 GGTYMTLLNTLSNLGGNWPGTVALWLADGLT  433 (510)
T ss_pred             CccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence            9999999999999999988888889988543

>TIGR00896 CynX cyanate transporter

Probab=99.21  E-value=4.4e-10  Score=109.19  Aligned_cols=134  Identities=17%  Similarity=0.083  Sum_probs=108.2

Q ss_pred             hhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHh-cChHHHHHHHHHHHHHHhhhhhccccchHHHHHH
Q 009757          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFLTPWAADTSLLALLAM  195 (526)
Q Consensus       117 ~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  195 (526)
                      .....+|.+.++.|.+..+.+.+.+...++..++.++.|++.||+ +||+.+.++.++.+++.+++.+.  ++.+... .
T Consensus       215 ~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~  291 (355)
T TIGR00896       215 SLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA--PMHGLWA-W  291 (355)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh--hhhHHHH-H
Confidence            344456777778899999999999999999999999999999999 56777778888888877776665  3333222 4


Q ss_pred             HHHhhhhccchhhhhHHHHhhhcC-cchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC
Q 009757          196 RAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (526)
Q Consensus       196 r~l~Gig~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g  253 (526)
                      -++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+++.++.|
T Consensus       292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            567899999988888777766554 5667889999998899999999999999998776

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.20  E-value=2.7e-10  Score=106.43  Aligned_cols=174  Identities=17%  Similarity=0.114  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhcchhh-hhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHh
Q 009757          101 VSMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (526)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~  179 (526)
                      .+.+++.|+..+.....++..+|. +.++|+.++.+.|...+.+.+...+..+.+|+++||+|.+|++.+....++++..
T Consensus       220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~  299 (417)
T COG2223         220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAA  299 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHH
Confidence            344555566555555566666665 4567999999999999999999999999999999999999999999999998888


Q ss_pred             hhhhccc-----cchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-
Q 009757          180 LTPWAAD-----TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-  253 (526)
Q Consensus       180 ~~~~~~~-----~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g-  253 (526)
                      +..+..+     .+....++.-+..++..|.-......++..++| ++-|.+.|+.....++|...-|..-+...+..| 
T Consensus       300 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~  378 (417)
T COG2223         300 LLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS  378 (417)
T ss_pred             HHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence            7766531     233443333333444444444456777888885 588999999999999999999999888888777 


Q ss_pred             chhHHHHHHHHHHHHHHHHHhh
Q 009757          254 IFGPFVIFGLSGFLWVLVWLSA  275 (526)
Q Consensus       254 w~~~f~~~~~~~~~~~~~~~~~  275 (526)
                      +...|++.....+++.+..+..
T Consensus       379 ~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         379 YTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999988888877765544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.20  E-value=9.7e-10  Score=109.68  Aligned_cols=156  Identities=17%  Similarity=0.079  Sum_probs=100.7

Q ss_pred             hhcchhhhh-hhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhh--hccccchHHHHH
Q 009757          118 MSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP--WAADTSLLALLA  194 (526)
Q Consensus       118 ~~~~~~~l~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~  194 (526)
                      +...+|.+. +++|.+..+.++..++..+...++.++.|+++||+|||+.+.++.++.++......  ....++.+..+.
T Consensus       262 ~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (432)
T PRK10406        262 FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG  341 (432)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            344456554 56899998999999988888899999999999999999988776665443332111  111123332222


Q ss_pred             HHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhh-HHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHH
Q 009757          195 MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVW  272 (526)
Q Consensus       195 ~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~~~~~~~  272 (526)
                      .-.+.+++.+...+....++.|++|++.|+.+.|+.....++ +....|.+.+.+ +..| |...++..++..++..+..
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~  420 (432)
T PRK10406        342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVS  420 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHH
Confidence            222233333444456678899999999999999998766554 344477777755 4445 5555665555555554444


Q ss_pred             Hh
Q 009757          273 LS  274 (526)
Q Consensus       273 ~~  274 (526)
                      ++
T Consensus       421 ~~  422 (432)
T PRK10406        421 LM  422 (432)
T ss_pred             HH
Confidence            43

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.20  E-value=1.5e-09  Score=107.44  Aligned_cols=155  Identities=14%  Similarity=0.032  Sum_probs=110.1

Q ss_pred             HHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCc
Q 009757          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK  420 (526)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (526)
                      .....-+|.+.++ +|.+....++..+.+.++..++.++.|+++||+|||         ..+..+..+..+..+.....+
T Consensus        33 ~~~~p~l~~i~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr---------~~l~~~~~~~~~~~~~~~~a~  102 (413)
T PRK15403         33 DLIQPGIINVVRD-FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR---------PVLITGALIFTLACAATLFTT  102 (413)
T ss_pred             HhhccCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch---------HHHHHHHHHHHHHHHHHHHcC
Confidence            3334445554444 899999999999999999999999999999999999         233334444444444444455


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHH
Q 009757          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYF  499 (526)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  499 (526)
                      +.+..++.-++.+...+...+.......+..| ++++++.++.+....++..++|.+++.+.++.| |+..|++.+++.+
T Consensus       103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~~~~~~~~  181 (413)
T PRK15403        103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAIIAVMGL  181 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Confidence            55544444333222223334444566777776 578999999999999999999999999988877 8999988887776


Q ss_pred             HHHHHHH
Q 009757          500 LSALFYI  506 (526)
Q Consensus       500 ~~~~~~~  506 (526)
                      ++.+..+
T Consensus       182 i~~~~~~  188 (413)
T PRK15403        182 IAFVGLL  188 (413)
T ss_pred             HHHHHHH
Confidence            6655433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.19  E-value=3.4e-10  Score=106.33  Aligned_cols=271  Identities=15%  Similarity=0.117  Sum_probs=159.4

Q ss_pred             HHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhH----hcChHHH-HHHHHHHHHHHhhhh
Q 009757          108 LALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKIIM-AWGVALWSLATFLTP  182 (526)
Q Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr~~l-~~~~~~~~~~~~~~~  182 (526)
                      .+...+.+..-....+++.++.|++....+.+-....+...+.+++.|..+||    |||||.+ ..+.+..+++.++..
T Consensus        41 a~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig  120 (498)
T KOG0637|consen   41 AAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIG  120 (498)
T ss_pred             HHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhh
Confidence            33333444445556788889999999999999999999999999999999995    7887754 456666677777777


Q ss_pred             hccccc-----------------hHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhH-HHHHHHhhhhhHHHHHHHH
Q 009757          183 WAADTS-----------------LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERAR-AVAIAMGGFTSGNAIGLVL  244 (526)
Q Consensus       183 ~~~~~~-----------------~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~ig~~l  244 (526)
                      ++  .+                 ...++++--+.=++.-.....+.+++.|...++++.+ +++++....++|..+|..+
T Consensus       121 ~a--aDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~  198 (498)
T KOG0637|consen  121 YA--ADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYAL  198 (498)
T ss_pred             hH--hhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeec
Confidence            66  22                 2234444445555666778889999999998777666 9999999999999999988


Q ss_pred             HHHHHhhcCchhH--HHH-------HHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCC-
Q 009757          245 SPILMSQAGIFGP--FVI-------FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVI-  314 (526)
Q Consensus       245 ~~~l~~~~gw~~~--f~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  314 (526)
                      ++++    +|+-.  |..       ++..-...+.-.-+...++-.......+.+......+      .+.+..+.... 
T Consensus       199 g~y~----~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~~~------~~~~~~~~~~~~  268 (498)
T KOG0637|consen  199 GSYL----GLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKGTT------ARSKSSKLPFLL  268 (498)
T ss_pred             cccc----CceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCccc------ccccccCcchHH
Confidence            8743    44322  222       2211111111111111111110000000000000000      00000000000 


Q ss_pred             chHHHHHc-CchHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HhcCCcch----------------hhhHhhHhHHHHHHH
Q 009757          315 PPFRRLLS-KMPTWSIIVANAMHSWGFFVILSWMPIYFNF-VYHIDLRQ----------------ASWFSAVPWSVMAFT  376 (526)
Q Consensus       315 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~----------------~~~~~~~~~~~~~i~  376 (526)
                      +....+.+ .+..+.+++...+...+.+.+..|...++-+ .++-++..                -.+=+.+..+...+-
T Consensus       269 e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~  348 (498)
T KOG0637|consen  269 EIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIY  348 (498)
T ss_pred             HHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHH
Confidence            11112222 3567888888888888888887777777644 34433322                123344555666777


Q ss_pred             HHHHHHHHHHHHhh
Q 009757          377 GYLGGLLSDMLIQR  390 (526)
Q Consensus       377 ~~~~g~l~dr~~~~  390 (526)
                      +...-++.+|+|.|
T Consensus       349 S~~~~~l~~~~g~r  362 (498)
T KOG0637|consen  349 SLLVEKLSRKFGTR  362 (498)
T ss_pred             HHHHHHHHHhcCcc
Confidence            78888888888855

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.19  E-value=3.3e-08  Score=94.05  Aligned_cols=324  Identities=12%  Similarity=0.086  Sum_probs=178.6

Q ss_pred             hhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHh
Q 009757          136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA  215 (526)
Q Consensus       136 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~  215 (526)
                      .+.+.-+-.+...+..+.+-++.+|+..+.=..+..++..++.++.+++  ++.+.=+++-++.+++.|........+..
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~--~~v~~~l~Gv~las~ssg~GE~tfL~lt~  138 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS--PSVWVRLLGVVLASLSSGLGEVTFLSLTH  138 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec--cchhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            3456667777888888888999999987766677777888899999998  89999889999999999987777777644


Q ss_pred             hhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCc--hhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHH
Q 009757          216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI--FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY  293 (526)
Q Consensus       216 ~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw--~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (526)
                       .+++    ...+-++++.+.++++|+..-..+.+ .|+  |..+++...+.++..+..++..+.++...+..+.++...
T Consensus       139 -~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~  212 (402)
T PF02487_consen  139 -FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDE  212 (402)
T ss_pred             -hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCc
Confidence             5543    35788889999999999888776665 554  777888777776666666666654433222111111000


Q ss_pred             HHHhcccccccCCCCCCCCCCchHHHHHc-CchHHHHHHHHHHHHHHHHHHHH-hHHHHHH-HHhcCCcchhhhHhhHhH
Q 009757          294 ILREKQKPLLMGNKHKPATVIPPFRRLLS-KMPTWSIIVANAMHSWGFFVILS-WMPIYFN-FVYHIDLRQASWFSAVPW  370 (526)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~s~~~~~~~~~~~~  370 (526)
                      ..++.... +....+.+......+++-++ -|..+..++-.+..++..+.++. ..+...- ....-...+..+....+.
T Consensus       213 ~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ  291 (402)
T PF02487_consen  213 AEDDLLES-ETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQ  291 (402)
T ss_pred             cccccccc-ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHH
Confidence            00000000 00011111112222322222 12222233333444444444332 2222221 111111233445555555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHH---HhhccCchhHHHHHHHHH-HHHHHhhhhhhHHHH
Q 009757          371 SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL---IGLTAAKSPVMASAWLTL-AIGMKSFSHSGFLVN  446 (526)
Q Consensus       371 ~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  446 (526)
                      ++..+++--...+  |+  |       +.++..+.-.+-.+.+   ..+.+.++.|..++.++. |...+..+......+
T Consensus       292 ~GVFISRSS~~~~--ri--r-------~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I  360 (402)
T PF02487_consen  292 LGVFISRSSLPFF--RI--R-------RLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRI  360 (402)
T ss_pred             HHHhhhhcceeee--eh--h-------hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            6655555332222  22  1       1111111111111111   112233455555444444 444444444555666


Q ss_pred             HHhhcccchhhHHHHHHHHHhHHHHHHHHHHhh
Q 009757          447 LQEIAPQYSGVLHGISNTAGTFAAILGTVGAGF  479 (526)
Q Consensus       447 ~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~  479 (526)
                      ..+..+++|..++|.......+|..++..++-.
T Consensus       361 ~~~~~~~~REFslg~vsvsds~GI~lAgll~l~  393 (402)
T PF02487_consen  361 SEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP  393 (402)
T ss_pred             HhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            667777899999999998888888877766543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.19  E-value=1.8e-09  Score=105.85  Aligned_cols=146  Identities=12%  Similarity=0.047  Sum_probs=97.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHH
Q 009757          323 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ  402 (526)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~  402 (526)
                      +|.++...+...+.+...+.+....+.+-++.+|+|..+.+++.++..++..+.++..|++.||+|.|         ...
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R---------~v~  103 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR---------RWT  103 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------HHH
Confidence            34566666666666666666666666666645999999999999999999999999999999999998         233


Q ss_pred             HHHHHHHHHHHHhhccC-----chhHHHHHH-HHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHH
Q 009757          403 SIGFIAPGIALIGLTAA-----KSPVMASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTV  475 (526)
Q Consensus       403 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~  475 (526)
                      ..+.+...+..+.....     ++.+..++. ++.+.+  +...+.....+++.+| ++||++.|+....+++|..++++
T Consensus       104 ~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig--g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~  181 (462)
T PRK15034        104 VFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA--GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQL  181 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH--HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence            33333333333333322     344433333 333332  4455556666777777 68999999997777777766655


Q ss_pred             HHhh
Q 009757          476 GAGF  479 (526)
Q Consensus       476 ~~g~  479 (526)
                      +...
T Consensus       182 l~p~  185 (462)
T PRK15034        182 VAPL  185 (462)
T ss_pred             HHHH
Confidence            5544

>TIGR00898 2A0119 cation transport protein

Probab=99.19  E-value=2e-10  Score=117.35  Aligned_cols=137  Identities=20%  Similarity=0.142  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcC
Q 009757          140 QSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP  219 (526)
Q Consensus       140 ~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~  219 (526)
                      ..+..+...++.++.+++.||+|||+.+.++.++.+++.++..+....+.+..++.-++.+++.+...+....+..|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            34455667788889999999999999999999999988887777622222555566677777777778888999999999


Q ss_pred             cchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 009757          220 QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (526)
Q Consensus       220 ~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~  279 (526)
                      ++.|+.++|+.+....+|.+++|.+.+ + ...++..++++.++..++..++.++ .||+
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-lpet  497 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF-LPET  497 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc-CcCC
Confidence            999999999999999999999999988 4 4456777888888777776665544 4544

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.18  E-value=1.1e-09  Score=95.31  Aligned_cols=357  Identities=13%  Similarity=0.069  Sum_probs=186.4

Q ss_pred             hhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHH
Q 009757          115 RVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLA  194 (526)
Q Consensus       115 ~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  194 (526)
                      ...-+|..-.+.+.+|....++|.+.-+..-..++...+.|.++|+-|||+.-+.-++.+.++++- -.+  +.|-.+++
T Consensus        53 DWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT-KhS--pqYkVLmV  129 (454)
T KOG4332|consen   53 DWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT-KHS--PQYKVLMV  129 (454)
T ss_pred             hhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh-hcC--CceEEEee
Confidence            345667777788889999999999998888888999999999999999999877666666665543 344  88999999


Q ss_pred             HHHHhhhhccchhhhhHHHH-hhhcCcchhhHHHHHHHh--------hhhhHHHHHHHHHHHHHhhc--CchhHHHHHHH
Q 009757          195 MRAVVGLAEGVALPAMNNMV-ARWFPQTERARAVAIAMG--------GFTSGNAIGLVLSPILMSQA--GIFGPFVIFGL  263 (526)
Q Consensus       195 ~r~l~Gig~g~~~~~~~~~i-~~~~~~~~r~~~~~~~~~--------~~~~G~~ig~~l~~~l~~~~--gw~~~f~~~~~  263 (526)
                      +|.+-|+..+..+.+..++. .|.-  ++|+.-.-|...        +..+-.+++.+.+..+.+.+  |.-.+|-..+.
T Consensus       130 GR~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAac  207 (454)
T KOG4332|consen  130 GRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAAC  207 (454)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHH
Confidence            99999999998888777754 4443  344333222222        22233344444445555544  44556655544


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 009757          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (526)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (526)
                      +..+...+.+.-..|.-.+     +.|.+....               ......+.+..++++.++..+..+.-...+.+
T Consensus       208 fLaigmAvil~~W~ENygd-----ps~~kdllt---------------qf~gaa~aiaSD~ki~LLG~iqsLFE~smytF  267 (454)
T KOG4332|consen  208 FLAIGMAVILSSWSENYGD-----PSENKDLLT---------------QFKGAARAIASDEKIALLGAIQSLFEGSMYTF  267 (454)
T ss_pred             HHHHHHHHHHhhhhhccCC-----hhhhHHHHH---------------HhhHhHHHHhcchHHHHHHHHHHHHhhhhhee
Confidence            4433333332222221111     111111110               01122335566677666655555544444433


Q ss_pred             -HHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccC---
Q 009757          344 -LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA---  419 (526)
Q Consensus       344 -~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  419 (526)
                       ..|.|..--+..+   .--|++++.+.+++++|+-+..++..|-..+   .-....+...+......+.++.....   
T Consensus       268 VFLWTPaLspn~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s~~~---ve~ymqivf~vs~a~l~Lpilt~~vsP~k  341 (454)
T KOG4332|consen  268 VFLWTPALSPNDEE---IPHGFIFATFMLASMLGSSLASRLLSRSSPK---VESYMQIVFLVSIAALLLPILTSSVSPSK  341 (454)
T ss_pred             eeeecccCCCCccc---CCchhHHHHHHHHHHHhhHHHHHHHhcCCcc---cchHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence             3344432211112   2246777777777777776665555543322   11111111111111111111111111   


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccc-hhHHHHHHHHHH
Q 009757          420 KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG-SFQGFLLLTSLL  497 (526)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g-~~~~~~~~~~~~  497 (526)
                      .++...+..++..-...+..+|...-+-....| +.|++.+..+..--++-..++-...  =.+... .-+..|-++...
T Consensus       342 es~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLynl--h~~~~p~~tr~mf~icS~~  419 (454)
T KOG4332|consen  342 ESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNL--HVDAFPTTTRNMFGICSAF  419 (454)
T ss_pred             CCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheec--ccccCccccchhhhhhHHH
Confidence            122333333444334455556666655556666 5788766665444343333322110  011110 134566666666


Q ss_pred             HHHHHHH
Q 009757          498 YFLSALF  504 (526)
Q Consensus       498 ~~~~~~~  504 (526)
                      ..++.+.
T Consensus       420 ~~~a~i~  426 (454)
T KOG4332|consen  420 LFVASIL  426 (454)
T ss_pred             HHHHHHH
Confidence            6555443

>PRK09848 glucuronide transporter; Provisional

Probab=99.15  E-value=1.1e-09  Score=110.00  Aligned_cols=136  Identities=19%  Similarity=0.144  Sum_probs=108.3

Q ss_pred             hcchhhhhh-hcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHH
Q 009757          119 SVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (526)
Q Consensus       119 ~~~~~~l~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  197 (526)
                      ....|.+.+ .+|.++...++......++..++.++++++.||+|+|+++.++.++.+++.++..+....+++.+++..+
T Consensus       248 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~  327 (448)
T PRK09848        248 SASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALA  327 (448)
T ss_pred             hhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence            334454443 4676655555555555677888999999999999999999999999888887776653346777778888


Q ss_pred             HhhhhccchhhhhHHHHhhhcCcc-------hhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCc
Q 009757          198 VVGLAEGVALPAMNNMVARWFPQT-------ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (526)
Q Consensus       198 l~Gig~g~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw  254 (526)
                      +.|+|.+...+...++..|..|.+       ++|...++.+....+|..+|+.+.+.+.+..|+
T Consensus       328 l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        328 IASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999988754       358999999999999999999999988876665

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.15  E-value=7.6e-10  Score=107.91  Aligned_cols=185  Identities=16%  Similarity=0.113  Sum_probs=139.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHH
Q 009757           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (526)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  177 (526)
                      +.....+.+......-+.+........+.++-|++..+..+......+...+..+++..+.||+|||+.++++..++.+.
T Consensus       269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~  348 (485)
T KOG0569|consen  269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVA  348 (485)
T ss_pred             HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            33333333333333444455566667788889999999999999999999999999999999999999999999999988


Q ss_pred             Hhhhhhcc--ccch--HH---HHHHHHHhhhhcc-chhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 009757          178 TFLTPWAA--DTSL--LA---LLAMRAVVGLAEG-VALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (526)
Q Consensus       178 ~~~~~~~~--~~~~--~~---l~~~r~l~Gig~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~  249 (526)
                      .+++....  ....  |.   .+++.++..++.+ +..|...-+.+|.+|++.|..+.++......+...+-......+.
T Consensus       349 ~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~  428 (485)
T KOG0569|consen  349 LLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQ  428 (485)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87765541  0111  11   2333333333333 236788899999999999999999999999999888888888887


Q ss_pred             hhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 009757          250 SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH  283 (526)
Q Consensus       250 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  283 (526)
                      +.+|- ..|++..+.+++..+..++..||++.+.
T Consensus       429 ~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  429 NVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             HHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            77776 7888888888888888999998876443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.13  E-value=8e-09  Score=101.92  Aligned_cols=146  Identities=10%  Similarity=0.063  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHH
Q 009757          326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG  405 (526)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  405 (526)
                      ++.+++..+...+........+|.+ ++.+|.+..+.+++.+...++..++++..|++.||+|+|         ..+..+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r---------~~~~~g   74 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK---------AGILLG   74 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---------HHHHHH
Confidence            4455566666666665556777766 455899999999999999999999999999999999998         334444


Q ss_pred             HHHHHHHHHhhc---cCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhc
Q 009757          406 FIAPGIALIGLT---AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV  481 (526)
Q Consensus       406 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~  481 (526)
                      .++.++..+...   ..++.+..+...++.....+...+....+..+..| +++++..++.+....+|..++|.+.+.+.
T Consensus        75 ~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        75 LFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444443322   12344444444333333334444444555555555 68999999999999999999999998875

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.13  E-value=1.3e-09  Score=102.04  Aligned_cols=147  Identities=16%  Similarity=0.176  Sum_probs=127.3

Q ss_pred             hhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhh
Q 009757          123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLA  202 (526)
Q Consensus       123 ~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig  202 (526)
                      ..-..++|++..++..+.-...+..+++++++|+|.||+|.|+++.++.++..+.++...+.  ..-..+.++-.+.|..
T Consensus       277 ~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~--~~~~~f~i~gll~g~s  354 (438)
T COG2270         277 VFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL--EGELDFWILGLLVGTS  354 (438)
T ss_pred             HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHh
Confidence            34455899999999999999999999999999999999999999999999999988877776  6666777888999999


Q ss_pred             ccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHH
Q 009757          203 EGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLV  271 (526)
Q Consensus       203 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~~~~~~  271 (526)
                      .|..+..+.++..+..|+++-++.+|+++.....+..+||.+.+.+.+..| -|..+....++..+.+++
T Consensus       355 ~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~  424 (438)
T COG2270         355 LGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL  424 (438)
T ss_pred             cchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence            999999999999999999999999999999999999999999999887554 666666655554444433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.10  E-value=1.4e-09  Score=122.59  Aligned_cols=143  Identities=17%  Similarity=0.193  Sum_probs=121.7

Q ss_pred             hhhhhhcCCccc-hhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhh
Q 009757          123 VPLSLAHGWSRS-FSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGL  201 (526)
Q Consensus       123 ~~l~~~~~~s~~-~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi  201 (526)
                      +.+.+.+|.+.. +.|++.+...++.+++.++.|++.||+++|+.+.++.++.+++.++..+.  .+.+.++++.++.|+
T Consensus       257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~  334 (1146)
T PRK08633        257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--PSLASVLVLFFLFGF  334 (1146)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHH
Confidence            344566899998 99999999999999999999999999999999999988888888888877  788888899999999


Q ss_pred             hccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh-hcCchhHHHHHHHHHHH
Q 009757          202 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAGIFGPFVIFGLSGFL  267 (526)
Q Consensus       202 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~~gw~~~f~~~~~~~~~  267 (526)
                      +.+...+...+++.+..|+++|++++++.+....+|.++++.+++.+.. .+++...|++.+.+.++
T Consensus       335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            9999899999999999999999999999999999999888888876654 23455566655554433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.10  E-value=1.1e-08  Score=98.63  Aligned_cols=158  Identities=12%  Similarity=0.028  Sum_probs=111.7

Q ss_pred             HHHhHHHHHHHHhcCCcch-hhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCch
Q 009757          343 ILSWMPIYFNFVYHIDLRQ-ASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS  421 (526)
Q Consensus       343 ~~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (526)
                      ...+...++.+.+|++..+ .|.+.+.+..+..+..+.+|++.||+|.|         .++..+.+.-++...+..+.++
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K---------~vL~l~~l~Wsl~t~L~~fa~S  114 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK---------PVLVLQALSFVCVWLLLLLGTS  114 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666669999999 99999999999999999999999999998         4455555555555555555555


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccc--hhHHHHHHHHHHH
Q 009757          422 PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG--SFQGFLLLTSLLY  498 (526)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~  498 (526)
                      ...+.+.-++.+...+... ....++....| ++|+++.|+.++...+|.++++++.+++. ..|  .|....++.....
T Consensus       115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln~Isl~s~  192 (511)
T TIGR00806       115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLNIISLVFM  192 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHH
Confidence            5554444444444444444 55555665555 79999999999999999999999999944 444  3444555555555


Q ss_pred             HHHHHHHHHHhcC
Q 009757          499 FLSALFYIIFSTG  511 (526)
Q Consensus       499 ~~~~~~~~~~~~~  511 (526)
                      .+++++.+++++.
T Consensus       193 ~~a~~~a~~LP~~  205 (511)
T TIGR00806       193 TFSVFLALFLKRP  205 (511)
T ss_pred             HHHHHHHHhCCCC
Confidence            6666666666543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.08  E-value=1.3e-09  Score=110.01  Aligned_cols=173  Identities=14%  Similarity=0.074  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHhhhhhhhhcchhhhh-hhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHH--------HHHHH
Q 009757          101 VSMLALALALCNADRVVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKII--------MAWGV  171 (526)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~--------l~~~~  171 (526)
                      +....+..+........+...+|.+. +.+|.+..+.|++.++..++..++.++.|+++||+++|+.        +..+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  342 (465)
T TIGR00894       263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGI  342 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            33444444444444445555566654 5689999999999999999999999999999999875421        11111


Q ss_pred             HHH--HHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 009757          172 ALW--SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (526)
Q Consensus       172 ~~~--~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~  249 (526)
                      ...  ++..+..... ..+.+..+++-.+.+.+.+...+.......|..| +.+|.+.++.+....+|..++|.+.+.+.
T Consensus       343 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~  420 (465)
T TIGR00894       343 GGLGPGIFAYALPYL-SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNIL  420 (465)
T ss_pred             HHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence            111  1111111121 1344444445555555555555555555667775 58999999999999999999999999887


Q ss_pred             hhc---CchhHHHHHHHHHHHHHHHHHhh
Q 009757          250 SQA---GIFGPFVIFGLSGFLWVLVWLSA  275 (526)
Q Consensus       250 ~~~---gw~~~f~~~~~~~~~~~~~~~~~  275 (526)
                      +..   +|+..|.+.++..++..++..+.
T Consensus       421 ~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       421 SQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            643   38888988887777766555443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=99.07  E-value=5.2e-09  Score=94.57  Aligned_cols=365  Identities=12%  Similarity=0.074  Sum_probs=226.2

Q ss_pred             cCCccchhh-HHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchh
Q 009757          129 HGWSRSFSG-IVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVAL  207 (526)
Q Consensus       129 ~~~s~~~~g-~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~  207 (526)
                      .+++..++. -+.=...-.+.+.-++.=.+.|-.-.|+++++-.+.......+.-+.  ++.+.+=+.-++.|...+. .
T Consensus        36 ~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g--~sV~~mQvlE~FyG~~tAa-E  112 (433)
T KOG3810|consen   36 KNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG--PSVKAMQVLEFFYGPATAA-E  112 (433)
T ss_pred             CCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhc--CCchheeeehhhcChHHHH-H
Confidence            355554432 22223334445555566678999999999988877777778888888  8999998999999998665 7


Q ss_pred             hhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC--chhHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 009757          208 PAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG--IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ  285 (526)
Q Consensus       208 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g--w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (526)
                      .+.++++-...+++++.++.+...+..-.|...|..++..+++...  +...=.+.-....+.. ..-.++|..+++.-.
T Consensus       113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~-~~A~fLP~v~rSl~f  191 (433)
T KOG3810|consen  113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAV-LLALFLPRVKRSLYF  191 (433)
T ss_pred             HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHH-HHHhhCCCCchhhhh
Confidence            7889999999999999999999999999999999999999876433  3322222222222222 233334444422111


Q ss_pred             CChhHHHHHHHhcccccccCCCCCCC--------CCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh-c
Q 009757          286 ISKYELEYILREKQKPLLMGNKHKPA--------TVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY-H  356 (526)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g  356 (526)
                      ..+++ +....+.++.   ..+.+..        ..+.++++..+||+++...+-+.+...+++.+..+....-++.. .
T Consensus       192 ~~~~~-~~~v~~~e~~---~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~  267 (433)
T KOG3810|consen  192 HRLED-KISVGDLEEM---NPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPN  267 (433)
T ss_pred             hcccc-cceeccchhc---CccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCC
Confidence            11111 0000111000   0000000        11224455667898888888888888888888888888777742 1


Q ss_pred             CCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 009757          357 IDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMK  436 (526)
Q Consensus       357 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (526)
                      -....-|..=++..+.++++.+..|.+.-.+.|.       +..++.++.+..+..++.+....+.|+..+..++.....
T Consensus       268 ~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~-------g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y  340 (433)
T KOG3810|consen  268 PANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW-------GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIY  340 (433)
T ss_pred             chhhhcCHHHHHHHHHHHHHHHHHHheeeccchh-------hHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhH
Confidence            1112234555666677778888888886555554       345666666677767777777777777777666554444


Q ss_pred             hhhhh-hHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccc----------hhHHHHHHHHHHHHHHHHHH
Q 009757          437 SFSHS-GFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVG----------SFQGFLLLTSLLYFLSALFY  505 (526)
Q Consensus       437 ~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g----------~~~~~~~~~~~~~~~~~~~~  505 (526)
                      .+..+ ....+..++..|.-|-.+|+...+.-+-..+   +.-...|..|          -|..-|++.+++.+++..+.
T Consensus       341 ~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsi---lT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~  417 (433)
T KOG3810|consen  341 QLTITIATFQIARNLSSELFGLVFGINTFVALILQSI---LTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIE  417 (433)
T ss_pred             hhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHh---heEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHH
Confidence            44333 3344555666678888888877665544443   3333445322          24556777777777776654


Q ss_pred             HHHhcC
Q 009757          506 IIFSTG  511 (526)
Q Consensus       506 ~~~~~~  511 (526)
                      ....++
T Consensus       418 ~~~~~~  423 (433)
T KOG3810|consen  418 YLMCRR  423 (433)
T ss_pred             HHHhhc
Confidence            444333

>PRK10133 L-fucose transporter; Provisional

Probab=99.07  E-value=2e-08  Score=99.99  Aligned_cols=146  Identities=10%  Similarity=0.002  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHH
Q 009757          326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG  405 (526)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  405 (526)
                      +..+.+.++...+.........|.+ ++.+|.+..+.++..+...++..++.++.|++.||+|+|         ..+..+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r---------~~l~~g   97 (438)
T PRK10133         28 FALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK---------AGIITG   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHH
Confidence            4555666666677777777888887 666999999999999999999999999999999999999         334444


Q ss_pred             HHHHHHHHHhh---ccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhccc-chhhHHHHHHHHHhHHHHHHHHHHhhhc
Q 009757          406 FIAPGIALIGL---TAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHGISNTAGTFAAILGTVGAGFFV  481 (526)
Q Consensus       406 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~lg~~~~~~~~g~l~  481 (526)
                      .....+..+..   ...++.+......++.+...+...........+..|+ +++...++.+....+|..+++.+++.+.
T Consensus        98 ~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133         98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444332   2344555554444443434444555555556677775 5556789999999999999998877654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.06  E-value=5.9e-09  Score=105.17  Aligned_cols=139  Identities=14%  Similarity=-0.010  Sum_probs=107.7

Q ss_pred             hhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhh---ccccchHHH
Q 009757          116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW---AADTSLLAL  192 (526)
Q Consensus       116 ~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~l  192 (526)
                      .......+.+.+....+....+++.+...++..++.+++++++||+|+|+.+.++.++..++.+...+   ...++.+.+
T Consensus       248 ~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (473)
T PRK10429        248 NIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLI  327 (473)
T ss_pred             HHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHH
Confidence            34444445555554445667778888878899999999999999999999999888876666554432   222567777


Q ss_pred             HHHHHHhhhhccchhhhhHHHHhhhcC-------cchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCc
Q 009757          193 LAMRAVVGLAEGVALPAMNNMVARWFP-------QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (526)
Q Consensus       193 ~~~r~l~Gig~g~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw  254 (526)
                      ++.-++.|++.+...+...++++|..|       .++.|..++.......+|..+++.+.+++.+..|+
T Consensus       328 ~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        328 VIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            788889999999999999999999965       33456689999999999999999999999876665

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.05  E-value=2e-10  Score=108.30  Aligned_cols=174  Identities=13%  Similarity=0.041  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHH
Q 009757          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (526)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (526)
                      .+++...+...-.+.+...++.. ++.++.+....|++.....+...+.++++|++.||+.|+         .++.++..
T Consensus        37 il~~vnlmny~Dr~~iagv~~~v-~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~---------~v~~vG~~  106 (493)
T KOG1330|consen   37 ILCLVNLMNYADRYTIAGVLKEV-QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK---------RVIAVGIF  106 (493)
T ss_pred             HHHHHHHHHHhhhhhhhhhhHHH-HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc---------eEEeeHHH
Confidence            34444444444444444433333 344899999999999999999999999999999999998         33444444


Q ss_pred             HHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccch
Q 009757          408 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS  486 (526)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~  486 (526)
                      +-.+..+.-.+....|.+.++=.+.+..-....+....++++.+| ++|++++++.+.....|..+|-..++.+.++.+.
T Consensus       107 iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~  186 (493)
T KOG1330|consen  107 IWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW  186 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence            444444444444666666666555555556667888888999998 5999999999999999999999999999999888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcC
Q 009757          487 FQGFLLLTSLLYFLSALFYIIFSTG  511 (526)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~  511 (526)
                      |++.|...+++.++..++.+++.+.
T Consensus       187 Wr~af~~~avl~vi~~~L~~~f~~e  211 (493)
T KOG1330|consen  187 WRWAFRGSAVLGVIVGLLVFLFVRE  211 (493)
T ss_pred             eEEEEEeehHHHHHHHHHHHhhccC
Confidence            9999999999988877776665443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.05  E-value=4.6e-09  Score=104.69  Aligned_cols=151  Identities=16%  Similarity=0.095  Sum_probs=123.5

Q ss_pred             HHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhc
Q 009757          105 ALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA  184 (526)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  184 (526)
                      .+..++............+++.++.--++...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~  310 (428)
T PF13347_consen  231 LLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL  310 (428)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence            33344444444455555666666543344678888899999999999999999999999999999999999999998888


Q ss_pred             cccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCc-------chhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCch
Q 009757          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQ-------TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (526)
Q Consensus       185 ~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~  255 (526)
                      ..++.+.+++.-++.|++.+..++...++++|..+.       ++.|..++..+....+|..+++.+.+.+.+..|+.
T Consensus       311 ~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  311 GPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             HhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            323899999999999999999999999999999873       34588999999999999999999999887766543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.05  E-value=1.8e-09  Score=98.44  Aligned_cols=131  Identities=18%  Similarity=0.189  Sum_probs=100.8

Q ss_pred             HHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHH--HHHHHHHhhhhccchhhhhHHHHhhhcCc
Q 009757          143 FLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLA--LLAMRAVVGLAEGVALPAMNNMVARWFPQ  220 (526)
Q Consensus       143 ~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~--l~~~r~l~Gig~g~~~~~~~~~i~~~~~~  220 (526)
                      ..+.-..|.++.+++.||+|||++|..+.+++++..++.....++|...  ++.+|++..    +.+.+.+.|..|.+|.
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis----g~fqvaYvYtPEVyPT  465 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS----GAFQVAYVYTPEVYPT  465 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh----chheEEEEecCcccch
Confidence            3455677889999999999999999999999999988877764344332  444565543    3466778899999999


Q ss_pred             chhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 009757          221 TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (526)
Q Consensus       221 ~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~  279 (526)
                      .-|+...|..+....+|.++.|.++  +....+-..+..+.+.+.++..+...++.-|+
T Consensus       466 avRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  466 AVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence            9999999999999999999999998  43334455566677777777777666665444

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.04  E-value=6.7e-09  Score=91.26  Aligned_cols=172  Identities=14%  Similarity=0.064  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHH-H
Q 009757           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS-L  176 (526)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~-~  176 (526)
                      .+++.++++.+....+.....+  ...+.+.+|+|+...+-+.+......++.+++.|.++||+|++...+.+..+.. +
T Consensus       266 fw~~~iicv~yyva~fPFi~lg--~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~  343 (459)
T KOG4686|consen  266 FWVLVIICVLYYVAWFPFITLG--PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLL  343 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhh--HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHH
Confidence            4555666666655554433333  235678899999999999999888899999999999999999987766555444 4


Q ss_pred             HHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC---
Q 009757          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG---  253 (526)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g---  253 (526)
                      +-....|+    ++.=+.+..+.|+............++...|+++.|.+.+..+...++|..+.|++++.+.+.-|   
T Consensus       344 ~H~~l~Ft----~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~  419 (459)
T KOG4686|consen  344 GHSGLFFT----FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYD  419 (459)
T ss_pred             HhhhHHhh----hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchh
Confidence            44444443    33334556677887776666667778888899999999999999999999999999999988644   


Q ss_pred             chhHHHHHHHHHHHHHHHHHhh
Q 009757          254 IFGPFVIFGLSGFLWVLVWLSA  275 (526)
Q Consensus       254 w~~~f~~~~~~~~~~~~~~~~~  275 (526)
                      |--.|.+......+..+..++.
T Consensus       420 ~le~ffl~~~~~aL~svgil~~  441 (459)
T KOG4686|consen  420 NLEAFFLIIGLMALTSVGILFY  441 (459)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhh
Confidence            5445544443333333333333

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=1.3e-09  Score=100.55  Aligned_cols=149  Identities=17%  Similarity=0.140  Sum_probs=120.3

Q ss_pred             hcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q 009757          355 YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIG  434 (526)
Q Consensus       355 ~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (526)
                      .+-+..+.|++++...+.+++.+++.|.+.||+|+|         ..+.+++..+.....++.+.+..+..++.=.+-+.
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~---------ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgv  171 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYK---------IPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGV  171 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccc---------cHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhh
Confidence            345667899999999999999999999999999999         66777888887777888888887766666555444


Q ss_pred             HHhhhhhhHHHHHHhhcc-c-chhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009757          435 MKSFSHSGFLVNLQEIAP-Q-YSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGE  512 (526)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~-~-~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (526)
                      ........-..+..+.+| + +|++++|+.-.+..+|..+||+++|.++|..| +...|++.++++++...+-+++.+..
T Consensus       172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~  250 (464)
T KOG3764|consen  172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPT  250 (464)
T ss_pred             hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCcc
Confidence            445555555666677776 3 68999999999999999999999999999998 89999999988888777766654443


Q ss_pred             e
Q 009757          513 R  513 (526)
Q Consensus       513 ~  513 (526)
                      +
T Consensus       251 ~  251 (464)
T KOG3764|consen  251 E  251 (464)
T ss_pred             c
Confidence            3

>PRK09669 putative symporter YagG; Provisional

Probab=99.03  E-value=5.2e-09  Score=104.90  Aligned_cols=122  Identities=9%  Similarity=0.148  Sum_probs=97.0

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHH
Q 009757          133 RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN  212 (526)
Q Consensus       133 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~  212 (526)
                      +...+.+.....+...++.+++++++||+|+|+.+.++.++.+++.+...+...++.+.+++..++.|++.+...+...+
T Consensus       263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a  342 (444)
T PRK09669        263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS  342 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566677788888899999999999999999988876665444333332257777888889999999999999999


Q ss_pred             HHhhhcCc-------chhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCc
Q 009757          213 MVARWFPQ-------TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (526)
Q Consensus       213 ~i~~~~~~-------~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw  254 (526)
                      +++|..+.       ++.|...+..+....+|..+|+.+++.+.+..|+
T Consensus       343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99998862       2346678899999999999999999999887776

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.01  E-value=8.8e-09  Score=85.05  Aligned_cols=133  Identities=15%  Similarity=0.155  Sum_probs=90.5

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHH
Q 009757          366 SAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV  445 (526)
Q Consensus       366 ~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (526)
                      .+...++..++.++.+++.||++||+         ....+.....+..+.....++.+......++.....+...+....
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   74 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKP---------VLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAA   74 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhH---------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            44566778899999999999999882         223333333333333333344444444444433334444556666


Q ss_pred             HHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          446 NLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       446 ~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      ...+..| ++|+++.++.+....++..++|.+.+.+.+..+ +...+.+.+.+.+++.+.....
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        75 LIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             HHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhc
Confidence            6777776 689999999999999999999999999998876 7777777776666665554443

>PTZ00207 hypothetical protein; Provisional

Probab=99.01  E-value=4.5e-08  Score=98.91  Aligned_cols=157  Identities=13%  Similarity=0.089  Sum_probs=97.3

Q ss_pred             HHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhcc
Q 009757          339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA  418 (526)
Q Consensus       339 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (526)
                      ..+.+..+.+.+ ++.+|++..+.+.+..... ...+..++.|++.||+|+|         .++.++.+...++.+....
T Consensus        42 ~~y~fsv~s~~L-~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R---------~vllig~ll~~iG~ll~al  110 (591)
T PTZ00207         42 FMYAFNLISGAM-QARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPR---------PIFVLSMTVFCLGTLLFAL  110 (591)
T ss_pred             HHHHHHHHHHHH-HHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHH
Confidence            344555566655 5558999999998877633 3345667889999999999         3444555554444444333


Q ss_pred             C------chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHH
Q 009757          419 A------KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLL  492 (526)
Q Consensus       419 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~  492 (526)
                      .      .+.+.+.+..++.+...+...+.......+.+|++||.+.|+......+|+++.+.+...+...  ++...|+
T Consensus       111 a~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl  188 (591)
T PTZ00207        111 TFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF  188 (591)
T ss_pred             HhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence            2      3444443333333333333334444555667899999999999999999998655555444432  3556666


Q ss_pred             HHHHHHHHHHHHHHHH
Q 009757          493 LTSLLYFLSALFYIIF  508 (526)
Q Consensus       493 ~~~~~~~~~~~~~~~~  508 (526)
                      +.+++.++..++...+
T Consensus       189 ~l~vl~~vv~ll~~~~  204 (591)
T PTZ00207        189 FLMSFALVVGILAIVF  204 (591)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            6666655554444443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.00  E-value=1.9e-08  Score=113.12  Aligned_cols=183  Identities=15%  Similarity=0.018  Sum_probs=113.6

Q ss_pred             HHHcCchHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHhcC-CcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCc
Q 009757          319 RLLSKMPTWSIIVANAMHSWGFFVILSWMPIY----FNFVYHI-DLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS  393 (526)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~-s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~  393 (526)
                      .++++++++.+.+..++..++.+.....++.+    +.+..+. +....++..+++.+..++..++.|+++||++||+..
T Consensus         6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~   85 (1140)
T PRK06814          6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA   85 (1140)
T ss_pred             hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence            56777777777776666665544332222222    2111111 113467777788888999999999999999998310


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHH
Q 009757          394 VTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAIL  472 (526)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~  472 (526)
                           ..+....++.....++.. ..++.+.++++.++.....++..+....++.+..+ ++++.++|+.++...+|..+
T Consensus        86 -----~~~~~~~~~~~~~~~~~~-~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~i  159 (1140)
T PRK06814         86 -----KILKFAEIGIAALAIYGF-HLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILL  159 (1140)
T ss_pred             -----HHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHH
Confidence                 011112222222222222 22445555555555444555566677777777766 68999999999999999999


Q ss_pred             HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          473 GTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       473 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      ||.++|++.+..| +...|+..+++.+++.++.+.+
T Consensus       160 gp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~  194 (1140)
T PRK06814        160 GTIIGGLATISGN-FVILVALLMGIAVLGWLASLFI  194 (1140)
T ss_pred             HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999876 7777755444444444444444

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.99  E-value=1.9e-08  Score=99.36  Aligned_cols=176  Identities=13%  Similarity=0.077  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHH----HHhhcCccchhHHHH
Q 009757          326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM----LIQRGTSVTLTRKIL  401 (526)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~~~~~~~~~~~~~~~  401 (526)
                      +..+....+...+++.....+++.|+++ +|.+....+.+..+..+...+..++.|+++||    +|||+        ..
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr--------p~   76 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR--------PF   76 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH--------HH
Confidence            3445555666677777778888998877 89999999999999999999999999999995    88883        23


Q ss_pred             HHHHHHHHHHHHHhhccCchh-----------------HHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cc--hhhHHHH
Q 009757          402 QSIGFIAPGIALIGLTAAKSP-----------------VMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QY--SGVLHGI  461 (526)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~g~~~g~  461 (526)
                      +..+.....+.+..+......                 +..+..+.+.-.......+...+++.|..| ++  ++.+.++
T Consensus        77 il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~  156 (477)
T TIGR01301        77 IAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAY  156 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHH
Confidence            333333333333333332221                 111222222223333444555677778777 33  3689999


Q ss_pred             HHHHHhHHHHHHHHHHhhh--cccc------------chhHHHHHHHHHHHHHHHHHHHHHhc
Q 009757          462 SNTAGTFAAILGTVGAGFF--VELV------------GSFQGFLLLTSLLYFLSALFYIIFST  510 (526)
Q Consensus       462 ~~~~~~lg~~~~~~~~g~l--~~~~------------g~~~~~~~~~~~~~~~~~~~~~~~~~  510 (526)
                      .+.+.++|+.+++.+++..  .+..            .+++..|++.+++++++.++..+..+
T Consensus       157 ~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~  219 (477)
T TIGR01301       157 FSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVK  219 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            9999999999999988865  2211            14678888888877777776655433

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.97  E-value=9.9e-09  Score=98.41  Aligned_cols=182  Identities=14%  Similarity=0.159  Sum_probs=135.5

Q ss_pred             HHcCc-hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc----CCcchhhhHhhHhHHHHHHHHHHHHHHHHHH-HhhcCc
Q 009757          320 LLSKM-PTWSIIVANAMHSWGFFVILSWMPIYFNFVYH----IDLRQASWFSAVPWSVMAFTGYLGGLLSDML-IQRGTS  393 (526)
Q Consensus       320 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-~~~~~~  393 (526)
                      .+++| .++.+...-+.-.+++|++...+..|+....+    ++.+++.-+++.+....-+..+++||++||+ |+|   
T Consensus        16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~---   92 (498)
T COG3104          16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR---   92 (498)
T ss_pred             cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh---
Confidence            34444 46677777788889999999999999998888    9999998888888888888889999999997 555   


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhccCc--hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc--c-chhhHHHHHHHHHhH
Q 009757          394 VTLTRKILQSIGFIAPGIALIGLTAAK--SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--Q-YSGVLHGISNTAGTF  468 (526)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~g~~~g~~~~~~~l  468 (526)
                            ..+..+.++..++.+.+...+  ....+.+.+.+.....+..=+....++.+..|  + +|-.++++.++..++
T Consensus        93 ------~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNi  166 (498)
T COG3104          93 ------RTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINI  166 (498)
T ss_pred             ------HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeeh
Confidence                  234455555555555555442  33333333333233344445566666666665  2 578888999999999


Q ss_pred             HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 009757          469 AAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTG  511 (526)
Q Consensus       469 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (526)
                      |+.++|.+.+++.+..| |...|..+++-..++++.++..++.
T Consensus       167 Gsl~~p~i~~~~~~~~g-~~~gF~~aavGm~~gl~~f~~~~r~  208 (498)
T COG3104         167 GSLIAPIITGLLAINYG-WHVGFGLAAVGMIIGLVIFLLGRRH  208 (498)
T ss_pred             HHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHccch
Confidence            99999999999999998 9999999999999988888776544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.95  E-value=5.4e-08  Score=89.31  Aligned_cols=177  Identities=16%  Similarity=0.108  Sum_probs=136.9

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHh-cChHHHHHHH
Q 009757           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGV  171 (526)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~  171 (526)
                      ..+..|.+...+.+.    .+..+....-+|.+..|.|+|..+.|++.+...+.....++..-.+++|. ++|+..+...
T Consensus       206 ~~~~aW~vtLfmGlq----S~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~  281 (395)
T COG2807         206 RSPLAWQVTLFMGLQ----SLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL  281 (395)
T ss_pred             cCchhHHHHHHHHhh----HHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            334455554444433    33334555568999999999999999999999999999999999999965 6788888888


Q ss_pred             HHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcC-cchhhHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 009757          172 ALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (526)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~  250 (526)
                      +++.++.+.+.+.+.++++..   -++.|+|.|..++.....+.+..+ +++-++..+..+....+=..+||.+.|++.|
T Consensus       282 ~~~l~G~~G~~~~P~~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD  358 (395)
T COG2807         282 LLMLVGLVGLLLAPGQLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD  358 (395)
T ss_pred             HHHHHHHHHHHHhhhhHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence            888888888877733333322   489999999999999999998885 4455666777777777778889999999998


Q ss_pred             hc-CchhHHHHHHHHHHHHHHHHHhhc
Q 009757          251 QA-GIFGPFVIFGLSGFLWVLVWLSAT  276 (526)
Q Consensus       251 ~~-gw~~~f~~~~~~~~~~~~~~~~~~  276 (526)
                      .. +|+..+...+...++..+..+..-
T Consensus       359 a~gsw~~~~~~l~~~~i~m~i~Gl~a~  385 (395)
T COG2807         359 ATGSWSAPLVLLALATLLMLIFGLRAG  385 (395)
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHhhcc
Confidence            65 599999888888877777666553

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.94  E-value=6.9e-09  Score=95.33  Aligned_cols=126  Identities=16%  Similarity=0.114  Sum_probs=97.3

Q ss_pred             cCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 009757          356 HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGM  435 (526)
Q Consensus       356 g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (526)
                      +.+...+|++.+.+.++..+.++.+|.++||+|||         ..+.++++..++..+.+....+...++..=++ ++.
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRk---------pvll~c~~~va~s~ll~~~S~~F~afv~aR~l-~Gi  133 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRK---------PVLLACLIGVALSYLLWALSRNFAAFVLARFL-GGI  133 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhh
Confidence            34556789999999999999999999999999999         66677777777777777766666333222223 333


Q ss_pred             HhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhcc---ccchhHHHH
Q 009757          436 KSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE---LVGSFQGFL  491 (526)
Q Consensus       436 ~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~---~~g~~~~~~  491 (526)
                      .-.......+++.|+.+ |+|+.+++.+++...+|-++||.++|++..   ..|.|..++
T Consensus       134 ~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~al  193 (451)
T KOG2615|consen  134 FKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFAL  193 (451)
T ss_pred             ccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHH
Confidence            33444566777788877 799999999999999999999999999988   566665555

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.93  E-value=4.1e-08  Score=93.23  Aligned_cols=158  Identities=31%  Similarity=0.493  Sum_probs=128.4

Q ss_pred             HHHhhhhhhhhcchhhhhhhcCCcc--chhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccc
Q 009757          109 ALCNADRVVMSVAIVPLSLAHGWSR--SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD  186 (526)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  186 (526)
                      +....+........+.+..+++.+.  .+.++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++..+.  
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--   89 (338)
T COG0477          12 LLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA--   89 (338)
T ss_pred             HHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC--
Confidence            3333555566677788888877766  588999999999999999999999999999988888887766666666666  


Q ss_pred             cc--hHHHHHHHHHhhhhccchhhhhHHHHhhhcCc-chhhHHHHHHHh-hhhhHHHHHHHHHHHHHhh--cCchhHHHH
Q 009757          187 TS--LLALLAMRAVVGLAEGVALPAMNNMVARWFPQ-TERARAVAIAMG-GFTSGNAIGLVLSPILMSQ--AGIFGPFVI  260 (526)
Q Consensus       187 ~~--~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~ig~~l~~~l~~~--~gw~~~f~~  260 (526)
                      .+  .+.+++.|+++|++.+...+...+++.++.|+ ++|+...+.... ...+|..+++.+++.+...  .+||..|.+
T Consensus        90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (338)
T COG0477          90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLL  169 (338)
T ss_pred             ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            44  89999999999999999999999999999987 688999998888 5888999999887777654  579987766


Q ss_pred             HHHHHHHH
Q 009757          261 FGLSGFLW  268 (526)
Q Consensus       261 ~~~~~~~~  268 (526)
                      ........
T Consensus       170 ~~~~~~~~  177 (338)
T COG0477         170 AALLGLLL  177 (338)
T ss_pred             HHHHHHHH
Confidence            66555433

>TIGR00901 2A0125 AmpG-related permease

Probab=98.90  E-value=8.4e-08  Score=93.26  Aligned_cols=156  Identities=14%  Similarity=0.066  Sum_probs=101.2

Q ss_pred             HHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHH-----HhhcCccchhHHHHHHHHHHHHHHHHHhh
Q 009757          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML-----IQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (526)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (526)
                      .+...+|.++++ .|+|..+.++.... .+...+ .++.|.+.||+     |||        +..+..+.+..++....+
T Consensus         6 ~~~~~~~~~~~~-~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr--------~~~l~~~~~~~~~~~~~l   74 (356)
T TIGR00901         6 LVGNTLPYWLRS-KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRR--------RSWLVLTQVLLLSLLLIL   74 (356)
T ss_pred             hHHhHHHHHHHH-cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCcc--------HHHHHHHHHHHHHHHHHH
Confidence            345567888887 79999999998655 444444 88999999998     555        222233333333332222


Q ss_pred             ccC---chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccch------
Q 009757          417 TAA---KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS------  486 (526)
Q Consensus       417 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~------  486 (526)
                      ...   ...+......++.........+....++.|..| |+|+.+.|+......+|..+++.+.+.+.+..|.      
T Consensus        75 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~  154 (356)
T TIGR00901        75 SFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLIT  154 (356)
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence            222   222222222222233334444556666777765 7999999999999999999999999999887652      


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHH
Q 009757          487 -FQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       487 -~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                       |+..|++.+++.+++.+..++.
T Consensus       155 ~wr~~f~i~ai~~l~~~~~~~~~  177 (356)
T TIGR00901       155 LWGYIFFWTALLILPGLLVTLFL  177 (356)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHh
Confidence             7888888877766655554433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.90  E-value=1.3e-08  Score=105.58  Aligned_cols=155  Identities=12%  Similarity=0.073  Sum_probs=101.1

Q ss_pred             HhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCc----
Q 009757          345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK----  420 (526)
Q Consensus       345 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  420 (526)
                      ..++. +++.++++..+.|++.+.+.++..++.++.+++.||.+|+++..         ++.++.+++.++....+    
T Consensus        54 ~~l~~-iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~---------~g~ll~~lg~ll~alphf~~~  123 (633)
T TIGR00805        54 SSLTT-IERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIG---------IGCAIMGLGSFLLSLPHFLSG  123 (633)
T ss_pred             hhchh-hhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEE---------ecHHHHHHHHHHHhChHHhcC
Confidence            34444 45559999999999999999999999999999999999884322         22222222222211110    


Q ss_pred             ---------------------------------------------h--hHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-
Q 009757          421 ---------------------------------------------S--PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-  452 (526)
Q Consensus       421 ---------------------------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  452 (526)
                                                                   +  ...+++.-++.+...+...+....++.|..| 
T Consensus       124 ~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~  203 (633)
T TIGR00805       124 RYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKS  203 (633)
T ss_pred             CccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCc
Confidence                                                         0  1122222222222233334555677777776 


Q ss_pred             cchhhHHHHHHHHHhHHHHHHHHHHhhhcccc---------------------chhHHHHHHHHHHHHHHHHHHHHHh
Q 009757          453 QYSGVLHGISNTAGTFAAILGTVGAGFFVELV---------------------GSFQGFLLLTSLLYFLSALFYIIFS  509 (526)
Q Consensus       453 ~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~---------------------g~~~~~~~~~~~~~~~~~~~~~~~~  509 (526)
                      ++|+...|+.+....+|..+|+.++|++.+..                     |.|+..|++.+++.++..+.++.++
T Consensus       204 ~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p  281 (633)
T TIGR00805       204 KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP  281 (633)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            69999999999999999999999999887543                     2356667777766666555554444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.86  E-value=8.1e-09  Score=99.09  Aligned_cols=152  Identities=16%  Similarity=0.180  Sum_probs=135.7

Q ss_pred             hhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhh
Q 009757          123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLA  202 (526)
Q Consensus       123 ~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig  202 (526)
                      =--.+|.+..+...|........+-++.-++.+++..|+|+-+++.+++.+..+=.+.+...  +|.|+.+..-+++|+.
T Consensus       395 fWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--~n~W~vLPieilqgit  472 (618)
T KOG3762|consen  395 FWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--QNPWMVLPIEILQGIT  472 (618)
T ss_pred             HHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--cCchheeeHHHHHHHH
Confidence            33457778788888988888888889999999999999999999999999999999988888  9999999999999999


Q ss_pred             ccchhhhhHHHHhhhcCcchhhHHHHHHH-hhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhc
Q 009757          203 EGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (526)
Q Consensus       203 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  276 (526)
                      .+..+.+..+|++...||+-|+.+.++.+ ...++|--+|.++||.+.+.+|-|..|.+.++.+++.+++.....
T Consensus       473 ~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  473 HALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             HHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999875 456799999999999999999999999999988877766655443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.85  E-value=3e-07  Score=89.17  Aligned_cols=158  Identities=16%  Similarity=0.113  Sum_probs=122.5

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhh-cCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHH
Q 009757           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (526)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (526)
                      +.++++...+   ..++.....+..+....++.+. +|.++.+..+.......+..++.+++.++.+|+|+|+++.++.+
T Consensus       234 ~Nrp~~~~l~---~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~  310 (467)
T COG2211         234 KNRPLLLLLL---MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLL  310 (467)
T ss_pred             ccchHHHHHH---HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHH
Confidence            3344444433   3334444444455554554443 56677777788888888888889999999999999999999999


Q ss_pred             HHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCc-------chhhHHHHHHHhhhhhHHHHHHHHH
Q 009757          173 LWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQ-------TERARAVAIAMGGFTSGNAIGLVLS  245 (526)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~ig~~l~  245 (526)
                      +..++.++..+.+.++.+.+++..++.++|.+...+...++++|..+-       +.-|...+......-+|..++..+.
T Consensus       311 ~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~  390 (467)
T COG2211         311 LLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP  390 (467)
T ss_pred             HHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888656889999999999999999999999999988752       3447788888888889999999888


Q ss_pred             HHHHhhcCc
Q 009757          246 PILMSQAGI  254 (526)
Q Consensus       246 ~~l~~~~gw  254 (526)
                      ++.....|+
T Consensus       391 g~~L~~~Gy  399 (467)
T COG2211         391 GWILGAIGY  399 (467)
T ss_pred             HHHHHHcCC
Confidence            888776653

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.82  E-value=2.8e-05  Score=77.07  Aligned_cols=280  Identities=11%  Similarity=0.007  Sum_probs=164.5

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHH-HHHhhhhhhHHHhHhcChHHHHHHHHHHH
Q 009757           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWG-YLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (526)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~-~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  175 (526)
                      .+..+..+.+..|+..+.....-..-..+.-.- ..++.+.++-....+. ..+...+..++++++++.+++-+....+.
T Consensus        22 E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~-~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~  100 (491)
T PF03219_consen   22 ELKKFLPLALMFFFILFNYTILRDLKDTLVVTA-QGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFL  100 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEec-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            345556666666666665555444333222211 1566677776655553 35557778999999999998887777766


Q ss_pred             HHHhhhhhcc-------ccc----------------------hHHHHHHHHHhhhhccchhh-hhHHHHhhhcCcchhhH
Q 009757          176 LATFLTPWAA-------DTS----------------------LLALLAMRAVVGLAEGVALP-AMNNMVARWFPQTERAR  225 (526)
Q Consensus       176 ~~~~~~~~~~-------~~~----------------------~~~l~~~r~l~Gig~g~~~~-~~~~~i~~~~~~~~r~~  225 (526)
                      ....++++..       +++                      .|...+..++.-+-...... .-..+++|.++.+|-.|
T Consensus       101 ~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKR  180 (491)
T PF03219_consen  101 GFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKR  180 (491)
T ss_pred             HHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            6666655531       011                      12222333333333233233 45788999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHh---------hcCchhHHHHHH----HHHHHHHHHHHhhccCCCCCCCCCChhHHH
Q 009757          226 AVAIAMGGFTSGNAIGLVLSPILMS---------QAGIFGPFVIFG----LSGFLWVLVWLSATSSTPDRHPQISKYELE  292 (526)
Q Consensus       226 ~~~~~~~~~~~G~~ig~~l~~~l~~---------~~gw~~~f~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (526)
                      ..+++..+.++|.+++..+..++.+         ...|...+....    +.+++...+.... .+...+.+...+... 
T Consensus       181 fYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~-~~~vl~~~~~~~~~~-  258 (491)
T PF03219_consen  181 FYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYM-NKNVLTDPRFYPSAK-  258 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHccCccccchhhh-
Confidence            9999999999999999998888877         123554332221    1222222222222 211111111000000 


Q ss_pred             HHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcch----hhhHhhH
Q 009757          293 YILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ----ASWFSAV  368 (526)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~~~  368 (526)
                                ..++++.+....++++.++++|.+..+++...+++.....+....-..+++.+- ++.+    .|.....
T Consensus       259 ----------~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ysafmG~~~~~  327 (491)
T PF03219_consen  259 ----------KKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYSAFMGKFSSW  327 (491)
T ss_pred             ----------cccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence                      002333444556778888999998888888888888877777766666666443 3332    2334445


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhh
Q 009757          369 PWSVMAFTGYLGGLLSDMLIQR  390 (526)
Q Consensus       369 ~~~~~~i~~~~~g~l~dr~~~~  390 (526)
                      .++...+..++++.+.+|+|-+
T Consensus       328 tGivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  328 TGIVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHH
Confidence            5555666667778888888876

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=98.82  E-value=8.1e-08  Score=96.38  Aligned_cols=127  Identities=14%  Similarity=0.163  Sum_probs=111.2

Q ss_pred             hhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhcc--------ccchHHHHHHHHH
Q 009757          127 LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA--------DTSLLALLAMRAV  198 (526)
Q Consensus       127 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l  198 (526)
                      +.+|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+...+..        .++.+.++..-++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            56899999999999999999999999999999999999999999999998876543210        0233455666788


Q ss_pred             hhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC
Q 009757          199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (526)
Q Consensus       199 ~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g  253 (526)
                      .+++.+....+...++.+..|+++++...++..+..++|..+++.+++.+.++.|
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999998899999999999999999999999999999999999999999998777

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11462 putative transporter; Provisional

Probab=98.82  E-value=2.1e-07  Score=93.31  Aligned_cols=123  Identities=15%  Similarity=0.171  Sum_probs=87.8

Q ss_pred             ccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhH
Q 009757          132 SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMN  211 (526)
Q Consensus       132 s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~  211 (526)
                      ++...+.+.+.+.++..++.+++++++||+|+|+.+..+..+.++..++..+....+.+.+++.-++.|++.+...+...
T Consensus       261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~  340 (460)
T PRK11462        261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW  340 (460)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455677788888999999999999999999998776555544434433333212333445555677888777777777


Q ss_pred             HHHhhhcC-------cchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCc
Q 009757          212 NMVARWFP-------QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (526)
Q Consensus       212 ~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw  254 (526)
                      ++++|..+       +++.|..++.......+|..+++.+++.+.+..|+
T Consensus       341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            78888776       33345556777788999999999999998876555

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.81  E-value=4.9e-07  Score=90.96  Aligned_cols=176  Identities=15%  Similarity=0.077  Sum_probs=114.0

Q ss_pred             cCchHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchh
Q 009757          322 SKMPTWSIIVANAMHSW----GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLT  397 (526)
Q Consensus       322 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~  397 (526)
                      ++++++..+....+...    ........++...++ .|-+ ....++.....++..++.++.|+++|.+|||       
T Consensus        38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr-------  108 (599)
T PF06609_consen   38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINAD-IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRR-------  108 (599)
T ss_pred             eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcch-------
Confidence            44555554433333222    222223445555555 6755 5667787888899999999999999999999       


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHH
Q 009757          398 RKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVG  476 (526)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~  476 (526)
                        .....+.++..++.......++...+++...+.....+.. ......+.|..| +.|+...++.....-.....++.+
T Consensus       109 --~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~-~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~i  185 (599)
T PF06609_consen  109 --YFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQ-ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLI  185 (599)
T ss_pred             --HHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHH-HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHH
Confidence              5666777777777777666676666666555433333333 234445677777 688877776665555555567777


Q ss_pred             HhhhccccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 009757          477 AGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST  510 (526)
Q Consensus       477 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  510 (526)
                      ...+.... +|++.|++..+...++++..+++.+
T Consensus       186 a~~~~~~~-~WRw~~~~~~i~~~i~~vl~~~fY~  218 (599)
T PF06609_consen  186 AQLFAAHS-GWRWIFYIFIIWSGIALVLIFFFYF  218 (599)
T ss_pred             HHHhccCC-CcchHHHHHHHHHHHHHHHHHHHhC
Confidence            76665554 5999999988877777666555433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.79  E-value=4e-06  Score=80.62  Aligned_cols=282  Identities=10%  Similarity=0.007  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHhhhhhhhhcchhhhhhh--cCCccchhhHHHHHHHHHHHHhhhhhhHHHh-----HhcChHHHHHH-HHH
Q 009757          102 SMLALALALCNADRVVMSVAIVPLSLA--HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD-----YYGGKIIMAWG-VAL  173 (526)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d-----r~Grr~~l~~~-~~~  173 (526)
                      .++.+.+++++.-.+.....+|.+.++  -+.|.+|.|... +....+. .-++|.++.|     |+||||.-++= -.+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fS-la~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l   80 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFS-LASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYL   80 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeee-eeechhH-HHHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence            356677888888777766678998888  688888877543 2222222 2455666666     78999865432 222


Q ss_pred             HHHHHhhhhhcc-----------------c---cc--hHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHH
Q 009757          174 WSLATFLTPWAA-----------------D---TS--LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAM  231 (526)
Q Consensus       174 ~~~~~~~~~~~~-----------------~---~~--~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~  231 (526)
                      .++..+..+...                 .   ++  ...+...-++.=+-.+....++..+.-....+++++.|.....
T Consensus        81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt  160 (544)
T PF13000_consen   81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT  160 (544)
T ss_pred             HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence            222222222110                 0   11  1123333334445557777888888888888899998888888


Q ss_pred             hhhhhHHHHHHHHHHHHHh-----hc--------C---chhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHH
Q 009757          232 GGFTSGNAIGLVLSPILMS-----QA--------G---IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL  295 (526)
Q Consensus       232 ~~~~~G~~ig~~l~~~l~~-----~~--------g---w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (526)
                      .+.+.|..++..+.-.+-+     .+        |   -..-..+.+.+.++..+...++.+|.|......+.+..+...
T Consensus       161 vG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~  240 (544)
T PF13000_consen  161 VGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSD  240 (544)
T ss_pred             hHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccccccc
Confidence            8888888887766555432     11        1   112234455555555566666666665432211111000000


Q ss_pred             Hhcccc-cccCCCC-CCC----CCC---chHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHh
Q 009757          296 REKQKP-LLMGNKH-KPA----TVI---PPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFS  366 (526)
Q Consensus       296 ~~~~~~-~~~~~~~-~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~  366 (526)
                      .+.+.. .+.++++ ...    ...   +.+.+++|-|++..+++.....-.++..-......-+.| .|++.++.+.+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~  319 (544)
T PF13000_consen  241 GKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLV  319 (544)
T ss_pred             ccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHH
Confidence            000000 0000000 001    111   223456778888888888887777777777777777778 699999887775


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHhh
Q 009757          367 AVPWSVMAFTGYLGGLLSDMLIQR  390 (526)
Q Consensus       367 ~~~~~~~~i~~~~~g~l~dr~~~~  390 (526)
                      .+    .+...++.|+++.|+.+.
T Consensus       320 li----~~P~qii~~~~~~Kws~g  339 (544)
T PF13000_consen  320 LI----DFPFQIILPYYIGKWSAG  339 (544)
T ss_pred             HH----hhhHHHHHHHHhhhhhcC
Confidence            44    555566666666666443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.76  E-value=0.00019  Score=69.29  Aligned_cols=279  Identities=10%  Similarity=-0.004  Sum_probs=164.5

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhc---CCccchhhHHHHHHHH-HHHHhhhhhhHHHhHhcChHHHHHHHH
Q 009757           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAH---GWSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (526)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~s~~~~g~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (526)
                      .+..+..+.+..++..+..+..-.    +.+.+   ...++.+.++-+..-+ +..+..++.+++.+++.+.+++-+...
T Consensus        25 E~~kflpl~Ll~f~I~~ny~~lR~----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~  100 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYNLLRS----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG  100 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            455555555555655555544443    33333   3456778888888888 667888899999999999999888888


Q ss_pred             HHHHHHhhhhhcc-------ccc-----------------------hHHHHHHHHHhhhhccchhh-hhHHHHhhhcCcc
Q 009757          173 LWSLATFLTPWAA-------DTS-----------------------LLALLAMRAVVGLAEGVALP-AMNNMVARWFPQT  221 (526)
Q Consensus       173 ~~~~~~~~~~~~~-------~~~-----------------------~~~l~~~r~l~Gig~g~~~~-~~~~~i~~~~~~~  221 (526)
                      .+....+++++..       +++                       .|..-+...+.-+-...... .-.....|.+..+
T Consensus       101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~  180 (509)
T COG3202         101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE  180 (509)
T ss_pred             HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            7777777776652       111                       12222222222222222222 4567788999989


Q ss_pred             hhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC----------chhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHH
Q 009757          222 ERARAVAIAMGGFTSGNAIGLVLSPILMSQAG----------IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYEL  291 (526)
Q Consensus       222 ~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g----------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (526)
                      |-.|..++++.+.+++..++..+..++..+-.          .+..+.+.++.++++..+..+.-+...+.+....+..+
T Consensus       181 eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~  260 (509)
T COG3202         181 EAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKK  260 (509)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhc
Confidence            99999999999999999999998888865211          23344444444444444444433332222211100000


Q ss_pred             HHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhh---HhhH
Q 009757          292 EYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW---FSAV  368 (526)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~---~~~~  368 (526)
                              +   .++++.+.....+++.++++|-++.+.+...+++.+.+.+....-.-.++.+-...+..++   +...
T Consensus       261 --------k---k~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~  329 (509)
T COG3202         261 --------K---KKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIW  329 (509)
T ss_pred             --------c---cccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHH
Confidence                    0   0122233344567778888898888888888888777776655444444433333222222   2333


Q ss_pred             hHHH-HHHHHHHHHHHHHHHHhh
Q 009757          369 PWSV-MAFTGYLGGLLSDMLIQR  390 (526)
Q Consensus       369 ~~~~-~~i~~~~~g~l~dr~~~~  390 (526)
                      .++. .++...+++.+.+|.|-.
T Consensus       330 tgvv~~v~~~~~~s~~ir~~GW~  352 (509)
T COG3202         330 TGVVSLVVFLFPGSNLIRRVGWF  352 (509)
T ss_pred             HHHHHHHHHHhhhHHHHHHhhHH
Confidence            3333 334445667777776654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.71  E-value=1e-06  Score=83.09  Aligned_cols=155  Identities=16%  Similarity=0.069  Sum_probs=125.6

Q ss_pred             hcchhhh-hhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHh-HhcChHHHHHHHHHHHHHHhhhhhc-cccchHHHHHH
Q 009757          119 SVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD-YYGGKIIMAWGVALWSLATFLTPWA-ADTSLLALLAM  195 (526)
Q Consensus       119 ~~~~~~l-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~  195 (526)
                      -+.+.++ .+-||.+..+...+.+....|..++....|++.. |.++|++..+++.+.+++..+..++ ...+.+.+...
T Consensus       228 D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~  307 (403)
T PF03209_consen  228 DVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPG  307 (403)
T ss_pred             HHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            3344333 4558999999999999999999999999999887 6788888888888888877654443 12678899999


Q ss_pred             HHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhh----------cCchhHHHHHHHHH
Q 009757          196 RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ----------AGIFGPFVIFGLSG  265 (526)
Q Consensus       196 r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~----------~gw~~~f~~~~~~~  265 (526)
                      -++.|++.|.+.....+.+.+...+++.|..+|.+.....++..+|..+++.+.|.          .+|-..|.+.++..
T Consensus       308 ~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll  387 (403)
T PF03209_consen  308 VFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLL  387 (403)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988662          23556677776666


Q ss_pred             HHHHHHHH
Q 009757          266 FLWVLVWL  273 (526)
Q Consensus       266 ~~~~~~~~  273 (526)
                      ++.+++..
T Consensus       388 ~~a~~ll~  395 (403)
T PF03209_consen  388 LAALVLLG  395 (403)
T ss_pred             HHHHHHHH
Confidence            55554443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.70  E-value=4.5e-07  Score=84.71  Aligned_cols=164  Identities=19%  Similarity=0.220  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhcchhhhhhh-cCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHh
Q 009757          101 VSMLALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (526)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~  179 (526)
                      +....++.|+...........++.+..+ .|.+..+.+...+.+..+.++|.+++.++..|+...|.+.+..++..+.++
T Consensus       238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~  317 (422)
T COG0738         238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLL  317 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            3344455555555666677777777766 788999999999999999999999999999999999999998888888888


Q ss_pred             hhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHH
Q 009757          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (526)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~  259 (526)
                      ..++.  ++.+.++ +-++.|+..+..+|...+...+..|  +.....|..-....+|+++-|.+.|++.+..|-...+.
T Consensus       318 ~~~l~--~g~v~~~-~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         318 AVALI--GGVVALY-ALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             HHHHh--cChHHHH-HHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            88888  7755544 4578899999999999999999997  33455556666678999999999999999999888777


Q ss_pred             HHHHHHHHHH
Q 009757          260 IFGLSGFLWV  269 (526)
Q Consensus       260 ~~~~~~~~~~  269 (526)
                      +...++.+..
T Consensus       393 ~~pllc~lyV  402 (422)
T COG0738         393 IVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHH
Confidence            5444444433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.67  E-value=1.5e-07  Score=93.04  Aligned_cols=176  Identities=13%  Similarity=0.058  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhcchhhhhhh-cCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcC---------hHHHH
Q 009757           99 KVVSMLALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG---------KIIMA  168 (526)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr---------r~~l~  168 (526)
                      ..++.+.+..+........+...+|.+.++ +|.+..+.|++.++..+...+..+++|.++||.-+         |..-.
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            445666666777777677777777876664 89999999999999999999999999999998855         33344


Q ss_pred             HHHHHHHHHHhhhhhccccch-HHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHH
Q 009757          169 WGVALWSLATFLTPWAADTSL-LALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI  247 (526)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~  247 (526)
                      ++....+++.++.++....+. ..+.+.-+..++. |...+....-..|.. +++-+..+|+.+....+..+++|.+.+.
T Consensus       338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~-g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~  415 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLS-GFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGI  415 (466)
T ss_pred             HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHc-ccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheee
Confidence            566666666666666632122 2222222222222 333333333344434 5888999999999999999999999999


Q ss_pred             HHh---hcCchhHHHHHHHHHHHHHHHHHhhc
Q 009757          248 LMS---QAGIFGPFVIFGLSGFLWVLVWLSAT  276 (526)
Q Consensus       248 l~~---~~gw~~~f~~~~~~~~~~~~~~~~~~  276 (526)
                      +..   ...|+..|++.+++.++..++..++-
T Consensus       416 ~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  416 IVTDNTREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             EeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence            984   34699999999998888776655553

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.61  E-value=1.5e-07  Score=67.81  Aligned_cols=80  Identities=20%  Similarity=0.196  Sum_probs=73.6

Q ss_pred             HhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchH
Q 009757          111 CNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL  190 (526)
Q Consensus       111 ~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  190 (526)
                      .++.+..+.+.+|.+.+|.++|.++.|++.+..++|+.+|.+...++.++..+++.+..+.+...+..+.+++.  ++.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~--~~~~   81 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT--HSFW   81 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH--hchH
Confidence            35677899999999999999999999999999999999999999999999888999999999999999999998  7766


Q ss_pred             HH
Q 009757          191 AL  192 (526)
Q Consensus       191 ~l  192 (526)
                      .+
T Consensus        82 ~w   83 (85)
T PF06779_consen   82 LW   83 (85)
T ss_pred             HH
Confidence            54

Note that many members are hypothetical proteins.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.58  E-value=6.9e-05  Score=76.02  Aligned_cols=158  Identities=18%  Similarity=0.135  Sum_probs=125.2

Q ss_pred             hhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHh-cChHHHHHHHHHHHHHHhhhhhcc-----c----
Q 009757          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFLTPWAA-----D----  186 (526)
Q Consensus       117 ~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-----~----  186 (526)
                      .....+.++.++++.+...+.-..+.+.-......+.++.++|-| ||-+++.++.++..++..+..+..     .    
T Consensus        56 ~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~  135 (571)
T KOG1237|consen   56 LVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC  135 (571)
T ss_pred             chhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Confidence            346667888889998888888888899888999999999999986 899999999999888865543331     0    


Q ss_pred             -----------cc---hHHHHHHHHHhhhhccchhhhhHHHHhhhcC---cc---hhhHHHHHHHhhhhhHHHHHHHHHH
Q 009757          187 -----------TS---LLALLAMRAVVGLAEGVALPAMNNMVARWFP---QT---ERARAVAIAMGGFTSGNAIGLVLSP  246 (526)
Q Consensus       187 -----------~~---~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~ig~~l~~  246 (526)
                                 ++   ...++...-+..+|.|+.-+...++-+|-++   ++   .+...+.++....++|..++..+..
T Consensus       136 ~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v  215 (571)
T KOG1237|consen  136 KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV  215 (571)
T ss_pred             cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH
Confidence                       01   2356777788889999999999999999998   22   2236788889999999999888887


Q ss_pred             HHHhhcCchhHHHHHHHHHHHHHHHHHh
Q 009757          247 ILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (526)
Q Consensus       247 ~l~~~~gw~~~f~~~~~~~~~~~~~~~~  274 (526)
                      +.-+..+|.+.|.+..+..++..++++.
T Consensus       216 yiq~~~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  216 YIQDNVGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             hhhhcccceeeccHHHHHHHHHHHHHHc
Confidence            7777889999999988877766655443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.57  E-value=2.7e-06  Score=76.31  Aligned_cols=159  Identities=17%  Similarity=0.086  Sum_probs=97.0

Q ss_pred             HHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc
Q 009757          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (526)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (526)
                      ...+.+..|.|.. ++.+|+|..+...+.....++..+| ++.|.+.|+++.+         ....++.+...+++..+.
T Consensus        16 Gt~Y~Fs~yS~~L-k~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~---------~~l~iG~~~~~~GY~~~~   84 (250)
T PF06813_consen   16 GTTYTFSAYSPQL-KSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPW---------VVLLIGAVLGFVGYGLLW   84 (250)
T ss_pred             CcccchhhhhHHH-HHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchH---------HHHHHHHHHHHHHHHHHH
Confidence            3445555665554 5569999999999999988888775 8899999999988         444444444444443322


Q ss_pred             --cC-----chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHH
Q 009757          418 --AA-----KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGF  490 (526)
Q Consensus       418 --~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~  490 (526)
                        ..     .+.|......+++................+.+|++||++.|+.-....+++++-..+...+.+.  +....
T Consensus        85 l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~--~~~~f  162 (250)
T PF06813_consen   85 LAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD--DPSSF  162 (250)
T ss_pred             HHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCC--ChHHH
Confidence              11     1223332222222222222223333334466789999999999999999999988888777765  23333


Q ss_pred             HHHHHHH-HHHHHHHHHHHh
Q 009757          491 LLLTSLL-YFLSALFYIIFS  509 (526)
Q Consensus       491 ~~~~~~~-~~~~~~~~~~~~  509 (526)
                      +.+.+.. .+++++...+++
T Consensus       163 ll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  163 LLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             HHHHHHHHHHHHHHHhhhee
Confidence            4444433 333444444443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.54  E-value=4.4e-06  Score=68.97  Aligned_cols=109  Identities=14%  Similarity=0.168  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhh
Q 009757          138 IVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARW  217 (526)
Q Consensus       138 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~  217 (526)
                      .-.++......+..++.+.+.+++|.|+.++++.+.+.+-.... +-  ++.+.++.+-++.|++.+..+++...++.+.
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~--~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FY--PNSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hh--hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            33455666677888888999999999999999999998766554 34  6788999999999999999999999999999


Q ss_pred             cCcchhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 009757          218 FPQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (526)
Q Consensus       218 ~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~  249 (526)
                      .+++++++..++.......+.++|.++.-.+.
T Consensus       118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888888766553

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.53  E-value=3.9e-07  Score=86.19  Aligned_cols=178  Identities=15%  Similarity=0.027  Sum_probs=129.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhH--------HHHH-HHHHHHHhhhhhhHHHhHhcChHHH
Q 009757           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGI--------VQSS-FLWGYLVSPIAGGTLVDYYGGKIIM  167 (526)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~--------~~s~-~~~~~~~~~~~~G~l~dr~Grr~~l  167 (526)
                      +-+.+...+..+|+.-...+..+.....+.+..|+.+.+...        ...+ ...++..+-.+...++|++|||++.
T Consensus       302 hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq  381 (538)
T KOG0252|consen  302 HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHH
Confidence            336677777888877777777777788888888776654433        1111 1222333556677899999999999


Q ss_pred             HHHHHHHHHHHhhhhhccccc----h----HHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHH
Q 009757          168 AWGVALWSLATFLTPWAADTS----L----LALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA  239 (526)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~----~----~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  239 (526)
                      +-+.+++.+..+..+..  .|    -    ....+..++.-+|=   ......+-+|.+|.+-|+...|+.....-.|.+
T Consensus       382 ~~GF~~~~i~~~~~~~~--y~~~~~~~Gf~v~y~l~~ff~NFGP---n~ttfivpaE~FParvR~t~hGIsAA~GK~GAi  456 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGP--YNQLENTIGFVVLYSLTFFFGNFGP---NATTFIVPAEIFPARVRSTCHGISAASGKAGAI  456 (538)
T ss_pred             HhhHHHHHHHHHHHcCC--cccccccCceeehHHHHHHHHhcCC---CceeEEeehhhchHHHhhhhhhHHHHhccchHH
Confidence            99999999999988887  44    1    11222333333332   234455678999999999999999999999999


Q ss_pred             HHHHHHHHHHh-----hcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 009757          240 IGLVLSPILMS-----QAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (526)
Q Consensus       240 ig~~l~~~l~~-----~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  280 (526)
                      +|.....++.+     ..+.|+.+++.+.++++..+..+++ ||+.
T Consensus       457 vg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk  501 (538)
T KOG0252|consen  457 VGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI-PETK  501 (538)
T ss_pred             HHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe-eccc
Confidence            99999999988     7789999999999888776665554 4543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.52  E-value=1.6e-09  Score=109.10  Aligned_cols=164  Identities=16%  Similarity=0.166  Sum_probs=111.7

Q ss_pred             hhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhh--h-cccc-----
Q 009757          116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP--W-AADT-----  187 (526)
Q Consensus       116 ~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~--~-~~~~-----  187 (526)
                      .......+.+.++.+.++.  -.......+...++.++...+.||+|||++++.+..+.+++.+..+  + ...+     
T Consensus       270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3444556777777777776  1222233345556677777999999999999999998888877664  1 1111     


Q ss_pred             chHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 009757          188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (526)
Q Consensus       188 ~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~  267 (526)
                      ++..+............+..+....+..|.+|.+.|+++.++......++..+++.+...+.+..+-...+++.+++.++
T Consensus       348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i  427 (451)
T PF00083_consen  348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLI  427 (451)
T ss_pred             ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHH
Confidence            22222222221111122335666788899999999999999999999999999998888877766635566666666777


Q ss_pred             HHHHHHhhccCCCC
Q 009757          268 WVLVWLSATSSTPD  281 (526)
Q Consensus       268 ~~~~~~~~~~~~~~  281 (526)
                      ..+..+++.||+..
T Consensus       428 ~~i~~~~~lpET~g  441 (451)
T PF00083_consen  428 AIIFVYFFLPETKG  441 (451)
T ss_pred             HHhheeEEEeeCCC
Confidence            77777788888754

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.43  E-value=1.3e-05  Score=81.86  Aligned_cols=182  Identities=16%  Similarity=0.094  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHH
Q 009757           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT  178 (526)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  178 (526)
                      +....+.+..+......+......+.+.+..|.+... .+...+..+...++..++..+.||+|||+.++.+...+.++.
T Consensus       295 ~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~  373 (513)
T KOG0254|consen  295 RLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICL  373 (513)
T ss_pred             HHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHH
Confidence            3444455555555555566677788888888877554 455556666667777777999999999999999999999998


Q ss_pred             hhhhhcccc-----------chHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHH
Q 009757          179 FLTPWAADT-----------SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI  247 (526)
Q Consensus       179 ~~~~~~~~~-----------~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~  247 (526)
                      ++++.....           ....+...-+.......+..+....+.+|.+|.+-|+++.++......+...+-......
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~  453 (513)
T KOG0254|consen  374 VILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPF  453 (513)
T ss_pred             HHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            877655200           112222222233333333456666789999999999999999877776666555444444


Q ss_pred             HHhhcCchhHHHHHHHHHHHHHH-HHHhhccCCCC
Q 009757          248 LMSQAGIFGPFVIFGLSGFLWVL-VWLSATSSTPD  281 (526)
Q Consensus       248 l~~~~gw~~~f~~~~~~~~~~~~-~~~~~~~~~~~  281 (526)
                      +.+..++...|...+..+.+..+ ..++..||+..
T Consensus       454 ~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg  488 (513)
T KOG0254|consen  454 ITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKG  488 (513)
T ss_pred             HHHhccccchHHHHHHHHHHHHHHHheEEcccCCC
Confidence            44444456667777666666666 56666666543

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.40  E-value=1.6e-06  Score=62.10  Aligned_cols=71  Identities=18%  Similarity=0.108  Sum_probs=61.3

Q ss_pred             HHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHH
Q 009757          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (526)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (526)
                      +...+++.+...+.+.|.+|...++.|+|+.++|.+.++..+...++++++|.++||+++++.++....++
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34556666777778888899999999999999999999999999999999999999999998877766544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.37  E-value=2.3e-06  Score=87.81  Aligned_cols=144  Identities=13%  Similarity=-0.004  Sum_probs=112.1

Q ss_pred             hcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q 009757          355 YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIG  434 (526)
Q Consensus       355 ~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (526)
                      ...+.....+..+++.++..+|.++.|.++||+|||         .+...++++..++-+.....++.+...+.=++.+.
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk---------~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~  183 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRK---------PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGF  183 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccH---------HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            456677788888999999999999999999999999         56666666666666777777888877777666555


Q ss_pred             HHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 009757          435 MKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTG  511 (526)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (526)
                      +..........+..|..+ ++|+.+..+ ......++.+++...+++..   +|+..+++..+..++.++..++.++.
T Consensus       184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es  257 (521)
T KOG0255|consen  184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPES  257 (521)
T ss_pred             hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcC
Confidence            555555666666666665 899999999 88889999999999999988   48888888888877766664444333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.27  E-value=2.6e-06  Score=84.58  Aligned_cols=162  Identities=14%  Similarity=0.069  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhcchhhhhhh-cCCccchhhHHHHHHHHHHHHhhhhhhHHHhH----hcChHHHHHHHH
Q 009757           98 VKVVSMLALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKIIMAWGVA  172 (526)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr~~l~~~~~  172 (526)
                      -..++..++.+++.....+.+...+|.+.++ .|.+..+.+.+...+.++.+++.+++|.++||    ..+|........
T Consensus       272 dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~  351 (495)
T KOG2533|consen  272 DPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLC  351 (495)
T ss_pred             chhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3445666777788888888888889998888 56899999999999999999999999999999    667776666666


Q ss_pred             HHHHHH-hhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchh-hHHHHHHHhhhhhHHHHHHHHH-HHHH
Q 009757          173 LWSLAT-FLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTER-ARAVAIAMGGFTSGNAIGLVLS-PILM  249 (526)
Q Consensus       173 ~~~~~~-~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~G~~ig~~l~-~~l~  249 (526)
                      ++.+.. ......  .+.......-+....+.....+......++...+..| -...+....+.+.+..+++.+- +...
T Consensus       352 ~~~~~g~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~a  429 (495)
T KOG2533|consen  352 LYAIIGAISLLAA--AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDA  429 (495)
T ss_pred             HHHHHHHHHHHhh--ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccC
Confidence            555544 433333  3344444444444555566677777888877755443 3344444555555544444433 3334


Q ss_pred             hhcCchhHHHHH
Q 009757          250 SQAGIFGPFVIF  261 (526)
Q Consensus       250 ~~~gw~~~f~~~  261 (526)
                      ..++|-..|...
T Consensus       430 p~y~~~~~f~~~  441 (495)
T KOG2533|consen  430 PRYGWGAVFYML  441 (495)
T ss_pred             cchhhhhHHHHH
Confidence            457888888443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.22  E-value=1.3e-05  Score=78.24  Aligned_cols=111  Identities=21%  Similarity=0.240  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccc-c------hHHHHHHHHHhhhhccchhhhhHHHHhhhcCcc---hhhHHHHHHHhhh
Q 009757          165 IIMAWGVALWSLATFLTPWAADT-S------LLALLAMRAVVGLAEGVALPAMNNMVARWFPQT---ERARAVAIAMGGF  234 (526)
Q Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~~-~------~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  234 (526)
                      |+++++.+++.+|.++..++..+ .      .+.++++.++.++|.|+.-|...++.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            57788889999998884444212 2      367899999999999999999999999999765   5778889999999


Q ss_pred             hhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhh
Q 009757          235 TSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (526)
Q Consensus       235 ~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  275 (526)
                      ++|..++..+.+++-++.||.+.|.+.++..++..+..+.-
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999998887776655543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.19  E-value=0.00026  Score=66.05  Aligned_cols=148  Identities=14%  Similarity=0.066  Sum_probs=87.5

Q ss_pred             HHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHH
Q 009757          350 YFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWL  429 (526)
Q Consensus       350 ~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (526)
                      ..++ +|++..+++.++....+.+.+...+.|.+.||+|||         .......+...+..+.- ..++.+.+++.=
T Consensus        60 LY~~-yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk---------~~cl~~cily~~scl~k-~~~~~~~L~~GR  128 (354)
T PF05631_consen   60 LYES-YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK---------KACLLFCILYSLSCLTK-HSSNYPVLLLGR  128 (354)
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch---------HHHHHHHHHHHHHHHHH-hccccHHHHHHH
Confidence            3344 899999999999999999999999999999999998         22333333333333332 234444444443


Q ss_pred             HHHHHHHhhhhhhHH-HHHHhhc----c-cchhhHHHHHH-HHHhHHHHHHHHHHhhhccccch-hHHHHHHHHHHHHHH
Q 009757          430 TLAIGMKSFSHSGFL-VNLQEIA----P-QYSGVLHGISN-TAGTFAAILGTVGAGFFVELVGS-FQGFLLLTSLLYFLS  501 (526)
Q Consensus       430 ~~~~~~~~~~~~~~~-~~~~~~~----~-~~~g~~~g~~~-~~~~lg~~~~~~~~g~l~~~~g~-~~~~~~~~~~~~~~~  501 (526)
                      ++++..........- -++.|..    | +..+...+... ..+.+..+++..+..++.+..|. ...+|.....+++++
T Consensus       129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~  208 (354)
T PF05631_consen  129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA  208 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            333333333333332 2222322    2 33455555554 23344556666666677776652 467788877777777


Q ss_pred             HHHHHHH
Q 009757          502 ALFYIIF  508 (526)
Q Consensus       502 ~~~~~~~  508 (526)
                      .++....
T Consensus       209 ~~~I~~~  215 (354)
T PF05631_consen  209 AVLILKT  215 (354)
T ss_pred             HHHHHhc
Confidence            6655443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=98.13  E-value=4e-05  Score=68.71  Aligned_cols=326  Identities=13%  Similarity=0.076  Sum_probs=169.5

Q ss_pred             hhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHh
Q 009757          136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA  215 (526)
Q Consensus       136 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~  215 (526)
                      .|.+.-+-.+...+..+.+..+.||+..-.=..+..++.+.+.++.+++  ++.++-+.+-.+..++.|.....-.++-+
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs--~s~~~sL~GV~~aSissGlGEiTFL~lss  141 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFS--NSVPMSLLGVVFASISSGLGEITFLALSS  141 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEec--cchhHHHhhhhhhhhcCCcceeehhhhhc
Confidence            4666667777888888888889998754444445556777788888888  88999888888888888875555444433


Q ss_pred             hhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh--hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHH
Q 009757          216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS--QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY  293 (526)
Q Consensus       216 ~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~--~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (526)
                      . ++    ....+.++.+.+.++++|..--..+.+  ...-|...++...+.++.+...++.+++++.......+++.+ 
T Consensus       142 ~-Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl~~~~~-  215 (409)
T KOG3880|consen  142 R-YP----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTLQPSTE-  215 (409)
T ss_pred             c-CC----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCcCccce-
Confidence            3 32    235566777777777888776666655  345777888877777777777777666554433211111111 


Q ss_pred             HHHhcccccccCCCCCCCCCCchHHHHHc-CchHHHHHHHHHHHHHHHHHHHHhHHHHH-HH-HhcCCcch---hhhHhh
Q 009757          294 ILREKQKPLLMGNKHKPATVIPPFRRLLS-KMPTWSIIVANAMHSWGFFVILSWMPIYF-NF-VYHIDLRQ---ASWFSA  367 (526)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~s~~~---~~~~~~  367 (526)
                      ...+.....+..+++.........++-++ -++++..++-.+..++..+.++.-+...+ -+ ..|.+...   .-+...
T Consensus       216 ~~~~~~~~~~a~e~~sv~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqv  295 (409)
T KOG3880|consen  216 IIPSQYLPFEAAEEKSVPSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQV  295 (409)
T ss_pred             eccCCCCcccccccccCchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhhe
Confidence            11000000000111101111222333222 22333333434444444444432222111 10 12332221   223333


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHH--HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhh-hhhHH
Q 009757          368 VPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF--IAPGIALIGLTAAKSPVMASAWLTLAIGMKSFS-HSGFL  444 (526)
Q Consensus       368 ~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  444 (526)
                      .+.++..+++-         .-+-..++.. +.+...-+  ++..+.-..+.+.++.+...+.++.-+..++.. .....
T Consensus       296 lYQlGVFiSRS---------S~~~~~~p~l-~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~  365 (409)
T KOG3880|consen  296 LYQLGVFISRS---------SINLFTMPYL-WLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFH  365 (409)
T ss_pred             eeeeeEEEEec---------cceEEechHH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHH
Confidence            33333322221         1110000000 01111111  111122223445667776666666644444443 44556


Q ss_pred             HHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhh
Q 009757          445 VNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGF  479 (526)
Q Consensus       445 ~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~  479 (526)
                      .+..+..|++|-.+++.......+|..++..+.=.
T Consensus       366 ~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp  400 (409)
T KOG3880|consen  366 NIHKETEPDVREFAMSAVSISDSIGIFLAGLLALP  400 (409)
T ss_pred             HHhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence            66778999999999999888888887777766533

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.09  E-value=0.00019  Score=71.03  Aligned_cols=126  Identities=20%  Similarity=0.230  Sum_probs=112.2

Q ss_pred             hhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhh-HHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhh
Q 009757          122 IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG-TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (526)
Q Consensus       122 ~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  200 (526)
                      .-.+...+++++.+.+.+.+...+...+++++.. .+...+|-|++..+|++...+...+.+++  ++.|+++....+.+
T Consensus       265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~--~~~w~~~~~~v~~~  342 (463)
T KOG2816|consen  265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA--TETWMMFAAGVVVA  342 (463)
T ss_pred             EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--ccchhhhHHHHHHH
Confidence            4455667899999999999988888888888877 77888899999999999999999999999  99999999988887


Q ss_pred             hhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 009757          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (526)
Q Consensus       201 ig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~  250 (526)
                      +. +...|+..+.++.+.+++++|+++++.+....+..+++|.+-+.+..
T Consensus       343 ~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  343 LA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             hh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            76 56699999999999999999999999999999999999998877654

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.04  E-value=4.1e-05  Score=54.87  Aligned_cols=62  Identities=16%  Similarity=0.178  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhh
Q 009757          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (526)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (526)
                      .+-..+++.+.+...+..++|.|+++ .|+++.++|.+.++..+...++.+++|+++||.+++
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~   65 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR   65 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            34566777888888999999999998 799999999999999999999999999999999988

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=98.00  E-value=0.00029  Score=62.39  Aligned_cols=101  Identities=16%  Similarity=0.193  Sum_probs=60.0

Q ss_pred             chhhHHHHHHHhhhhhHHHHHHHHHHHH---Hh--hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHH
Q 009757          221 TERARAVAIAMGGFTSGNAIGLVLSPIL---MS--QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL  295 (526)
Q Consensus       221 ~~r~~~~~~~~~~~~~G~~ig~~l~~~l---~~--~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (526)
                      |+|+....+...+.++|.++....--.-   .+  .-.|++.+.+.+++.++.+++..++-.+-....+. +++      
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~------   74 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQ------   74 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-ccc------
Confidence            5666666677777888877765442111   11  23599999999888877777666653332221111 011      


Q ss_pred             HhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHH
Q 009757          296 REKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHS  337 (526)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (526)
                               ++++..........+.+|++..|...+.+...-
T Consensus        75 ---------~k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL  107 (267)
T PF07672_consen   75 ---------EKENSTLSKKPSYKSILKEKETWKWILIYGIWL  107 (267)
T ss_pred             ---------ccccccccccchHHHHHccchHHHHHHHHHHHh
Confidence                     111222233467889999999998877665543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.94  E-value=0.0003  Score=72.86  Aligned_cols=162  Identities=10%  Similarity=0.040  Sum_probs=103.8

Q ss_pred             HHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhcc
Q 009757          339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA  418 (526)
Q Consensus       339 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (526)
                      .++++...+..|+.+.+|++...+..+...+....-+..+++|+++|++-.+       ++.+ .++.++..++..++..
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~-------~~tI-l~~~ii~~lG~~llai   73 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK-------FKTI-LYLSIVYVVGHALLSF   73 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHH-HHHHHHHHHHHHHHHh
Confidence            3556677778888888899999888888888888888889999999986444       1222 2222222222222221


Q ss_pred             C--ch------hHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-c---chhhHHHHHHHHHhHHHHHHHHHHhhhcccc--
Q 009757          419 A--KS------PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-Q---YSGVLHGISNTAGTFAAILGTVGAGFFVELV--  484 (526)
Q Consensus       419 ~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~--  484 (526)
                      .  +.      ....+..+.+..++.+..-+.......+..+ +   .+-..+.+++...++|+.+++.+.+++.+..  
T Consensus        74 ~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~  153 (654)
T TIGR00926        74 GAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC  153 (654)
T ss_pred             ccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            1  10      1112222333333333444555555555443 2   4677889999999999999999999987543  


Q ss_pred             -c---hhHHHHHHHHHHHHHHHHHHHHH
Q 009757          485 -G---SFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       485 -g---~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                       |   +|...|.+.+++.+++.+++...
T Consensus       154 fg~~~~~~~aF~i~~i~m~ia~lvf~~g  181 (654)
T TIGR00926       154 FGCQDCYPLAFGVPAILMILALIVFMAG  181 (654)
T ss_pred             cccCcchHHHHHHHHHHHHHHHHHHHHh
Confidence             1   37788888888888777766554

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.93  E-value=0.00079  Score=64.07  Aligned_cols=120  Identities=13%  Similarity=0.002  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHH----HHHHhhhhhhHHHhHhcChHHHHHHHHHHH
Q 009757          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW----GYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (526)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~----~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  175 (526)
                      ...+.++..+-....++++..+.+++.+++-.+.. .-.....+.+    ...+....-.++.-|..+| +.........
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~-~~~~l~~~~i   96 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTR-VGYLLSLIAI   96 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            34444455555566777888888888877644333 2233333333    3344444444444452211 1111111111


Q ss_pred             HHHhhhhhcc-------ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcch
Q 009757          176 LATFLTPWAA-------DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE  222 (526)
Q Consensus       176 ~~~~~~~~~~-------~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~  222 (526)
                      +....+.++.       ...++..++.-.+.+.+.|..+.......++. |++.
T Consensus        97 l~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~y  149 (406)
T KOG1479|consen   97 LFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEY  149 (406)
T ss_pred             HHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHH
Confidence            1111222221       13466677778888999888888877766654 4443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.76  E-value=0.0032  Score=62.22  Aligned_cols=52  Identities=12%  Similarity=0.171  Sum_probs=36.8

Q ss_pred             chHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHH
Q 009757          188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVL  244 (526)
Q Consensus       188 ~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l  244 (526)
                      .++..++.-++.|++.+.......++.+ .+|++    .++.+..+.+++++++.++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence            4677777888899999988888888776 45533    4555666666666666554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.69  E-value=0.00084  Score=66.68  Aligned_cols=157  Identities=21%  Similarity=0.223  Sum_probs=95.8

Q ss_pred             HhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHH---hhcCccchhHHHHHHHHHHHHHHHHHhhccCc-
Q 009757          345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI---QRGTSVTLTRKILQSIGFIAPGIALIGLTAAK-  420 (526)
Q Consensus       345 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  420 (526)
                      .-...++++.+|+++.+...+.....+-.. ..++.|.++|-+.   .|       |+..+.++.++..+..+.+...+ 
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~r-------r~~Y~~i~~~~~~~~~~~~~~~~~   81 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYR-------RKPYMIIGWLLGAVSALVLALLPA   81 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCc-------chHHHHHHHHHHHHHHHHHHhccc
Confidence            344567788899999988877666555444 5578999999874   33       34555555554433333222221 


Q ss_pred             ---hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhc---ccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHH
Q 009757          421 ---SPVMASAWLTLAIGMKSFSHSGFLVNLQEIA---PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLT  494 (526)
Q Consensus       421 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~  494 (526)
                         +.....+++++........-...-....|..   |+.+|...+....+..+|+.++..+.|.+.+..+ ++..|.+.
T Consensus        82 ~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~  160 (433)
T PF03092_consen   82 SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLIS  160 (433)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHH
Confidence               2222222222222222233333333333433   4458888999999999999999999999999876 77777777


Q ss_pred             HHHHHHHHHHHHHHhc
Q 009757          495 SLLYFLSALFYIIFST  510 (526)
Q Consensus       495 ~~~~~~~~~~~~~~~~  510 (526)
                      +.+..+..+..+++.+
T Consensus       161 ~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  161 AALPLLMLIVALFLLE  176 (433)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            6666655555444444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.63  E-value=0.0012  Score=63.32  Aligned_cols=139  Identities=12%  Similarity=0.005  Sum_probs=93.2

Q ss_pred             HHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHH-----HHHH
Q 009757          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL-----WSLA  177 (526)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~-----~~~~  177 (526)
                      -+.+.++..+...+.+.+.+.. -.++.-...+..+...+|.+|..++.--...+  |+  |++.+.+.+-     ..+.
T Consensus       251 PL~lVY~aEY~InqGv~~tl~f-p~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l  325 (402)
T PF02487_consen  251 PLFLVYFAEYFINQGVAPTLLF-PNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLL  325 (402)
T ss_pred             HHHHHHHHHHHHHhchHHHhcC-CccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHH
Confidence            3455666666544443333211 11233335677788888888877765432221  23  3333332222     2222


Q ss_pred             HhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 009757          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (526)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l  248 (526)
                      ....-+.  ++.|.+++.-+..|+..|..+......+.|-.++++|..+++..+.+-++|..++.+++-.+
T Consensus       326 ~s~~~fi--psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  326 QSWYRFI--PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHh--hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            2233444  78899999999999999999999999999999999999999999999999999999888665

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=97.62  E-value=0.0075  Score=61.15  Aligned_cols=166  Identities=14%  Similarity=0.017  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHH
Q 009757          330 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP  409 (526)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  409 (526)
                      .+..++..++...........+...+|-+....+.+.+.+.++..+|+.+++++.++..++.      ...-+.++++..
T Consensus        20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~------~~~e~~i~l~~~   93 (521)
T PRK03612         20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF------VAVELLLALLGG   93 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH------HHHHHHHHHHHH
Confidence            34444555555556666666666667888888888989888888888888887764433330      001111111111


Q ss_pred             HHHHHh---hccCchhHH-HHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhcc-cc
Q 009757          410 GIALIG---LTAAKSPVM-ASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVE-LV  484 (526)
Q Consensus       410 ~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~-~~  484 (526)
                      ....+.   ......... .....++.....+...|...-+......+..|...|-.+....+|+++|+.+.+++.- ..
T Consensus        94 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~l  173 (521)
T PRK03612         94 LSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRL  173 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhc
Confidence            111111   111000111 1111111122223333333333333223346777888999999999999999888764 67


Q ss_pred             chhHHHHHHHHHHHHHH
Q 009757          485 GSFQGFLLLTSLLYFLS  501 (526)
Q Consensus       485 g~~~~~~~~~~~~~~~~  501 (526)
                      |.....+.+..+..+++
T Consensus       174 G~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        174 GLIRTAALTGSLNLLAA  190 (521)
T ss_pred             chHHHHHHHHHHHHHHH
Confidence            74444444433333333

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.59  E-value=0.03  Score=51.42  Aligned_cols=70  Identities=17%  Similarity=0.154  Sum_probs=53.4

Q ss_pred             HHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhc
Q 009757          146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWF  218 (526)
Q Consensus       146 ~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~  218 (526)
                      ..+..+++.+.+..++|.|++++++...+......-..   +.+..++-.....|+|.+..+..--+++++.-
T Consensus        70 ~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~---pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   70 SLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLE---PRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc---hhHHhhccHHHhhccccccccccCcceecHHH
Confidence            33445555568999999999999998888765544322   67888999999999999988877666666554

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.55  E-value=0.0008  Score=65.97  Aligned_cols=175  Identities=11%  Similarity=0.072  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHH-HhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHH
Q 009757          327 WSIIVANAMHSWGFFVILSWMPIYFNF-VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG  405 (526)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  405 (526)
                      +...+..++.......+..-.-+|+++ ..+-+....|++.+...++.++++++.|+...|.+.-++      .++....
T Consensus        37 ~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~------Pli~s~i  110 (488)
T KOG2325|consen   37 YLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKK------PLIVSFL  110 (488)
T ss_pred             HHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCccc------CHHHHHH
Confidence            344444444444443344444456665 246677788999999999999999999999999875311      1111111


Q ss_pred             HHHHH-HHHHhhccCch--hHHHHHHHHHHHHHHhhhhhhHHHHHHhhc-ccchhhHHHHHHHHHhHHHHHHHHHHhhhc
Q 009757          406 FIAPG-IALIGLTAAKS--PVMASAWLTLAIGMKSFSHSGFLVNLQEIA-PQYSGVLHGISNTAGTFAAILGTVGAGFFV  481 (526)
Q Consensus       406 ~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~  481 (526)
                      +...+ +.++.+...++  .++.+.+= +..|.+.......-.+..+.. +++|.++++.......+|..+||.+...+.
T Consensus       111 i~~~g~llY~~l~~~~~~~~y~mL~~R-~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~  189 (488)
T KOG2325|consen  111 IAIIGNLLYLALAYVPNGVKYLMLVAR-ILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT  189 (488)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHH-HHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence            11122 22213333333  22222222 122222233334445555543 478888888877777777777776654433


Q ss_pred             c------------ccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          482 E------------LVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       482 ~------------~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      .            .++.|..+-++.+++.++..+...+.
T Consensus       190 ~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~  228 (488)
T KOG2325|consen  190 PLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFF  228 (488)
T ss_pred             hhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhh
Confidence            2            11236667777777777666655554

>PRK03612 spermidine synthase; Provisional

Probab=97.53  E-value=0.0052  Score=62.25  Aligned_cols=142  Identities=19%  Similarity=0.207  Sum_probs=86.9

Q ss_pred             hhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHH---HHHHHhhhhhcc--ccch-HHHHHHHHHhh
Q 009757          127 LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL---WSLATFLTPWAA--DTSL-LALLAMRAVVG  200 (526)
Q Consensus       127 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~---~~~~~~~~~~~~--~~~~-~~l~~~r~l~G  200 (526)
                      .-+|.+..+.+.+.+++..|..+|+.++|++.++.-++.. .+-..+   ..++..+.....  ...+ ..++...++.+
T Consensus        43 ~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  121 (521)
T PRK03612         43 YLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIG  121 (521)
T ss_pred             HHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3468888899999999999999999999888744333322 111111   111111111110  0111 22334456677


Q ss_pred             hhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHH-hhcCchhHHHHHHHHHHHHHH
Q 009757          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQAGIFGPFVIFGLSGFLWVL  270 (526)
Q Consensus       201 ig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~~gw~~~f~~~~~~~~~~~~  270 (526)
                      +..|+..|....+..+.. .++-++..|-......+|.++|.++.+++. ..+|-....++.+.+.++..+
T Consensus       122 ~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~  191 (521)
T PRK03612        122 LLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL  191 (521)
T ss_pred             HHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            888888887777665543 234567788888899999999999987765 467755555555555444443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.22  E-value=0.035  Score=46.02  Aligned_cols=107  Identities=12%  Similarity=0.010  Sum_probs=69.1

Q ss_pred             hHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhH
Q 009757          364 WFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGF  443 (526)
Q Consensus       364 ~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (526)
                      .-.++......+..++.+.+.+++|.|         +.+.++.+...+........ +.+..+..-.+.+...+..+...
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K---------~sm~lg~~~y~~y~~~~~~~-~~~~l~~~s~l~G~~~a~lW~aq  110 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPK---------WSMILGSLGYAIYIASFFYP-NSYTLYPASALLGFGAALLWTAQ  110 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhHHhhHhh
Confidence            345555666778888899999999988         55666666665555444333 34444444433333444555555


Q ss_pred             HHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhh
Q 009757          444 LVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFF  480 (526)
Q Consensus       444 ~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l  480 (526)
                      ..++.+... +.+++..|+...+.+.+.++|..+.-.+
T Consensus       111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555566555 6888888998888888888877665444

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.17  E-value=0.00074  Score=64.55  Aligned_cols=175  Identities=13%  Similarity=0.076  Sum_probs=110.5

Q ss_pred             HHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcC-hHHHHHHHHHHHHHHh-hh
Q 009757          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMAWGVALWSLATF-LT  181 (526)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l~~~~~~~~~~~~-~~  181 (526)
                      +...+.+.....+.....+......-|.+....|++.....++.++++...|.+.||... |.++++......++.. +.
T Consensus       271 l~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~  350 (480)
T KOG2563|consen  271 LAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLL  350 (480)
T ss_pred             HHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            333333333434444555554455557777889999999999999999999999999864 6666666666555532 11


Q ss_pred             hhc-cccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC----chh
Q 009757          182 PWA-ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG----IFG  256 (526)
Q Consensus       182 ~~~-~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g----w~~  256 (526)
                      .+. .....+.++..-.+.|.+.....|...-+-.|..-|..-+.-.|+.....++-.++-..+-+.+.+..+    |..
T Consensus       351 ~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~  430 (480)
T KOG2563|consen  351 TCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFP  430 (480)
T ss_pred             HhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCcc
Confidence            111 112345566667788888888899888888887755555666777766666666666666666666554    333


Q ss_pred             HHHHHHHHHHHHHHHHHhhccC
Q 009757          257 PFVIFGLSGFLWVLVWLSATSS  278 (526)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~  278 (526)
                      .-+......++.+++..+++|+
T Consensus       431 ~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  431 ANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             chhHhHHHHHHHHHHHhhhhhh
Confidence            3333444444444455555444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.17  E-value=0.0042  Score=60.82  Aligned_cols=148  Identities=18%  Similarity=0.082  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhh
Q 009757          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (526)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  180 (526)
                      .+...++..+-++..-.++..+..+...-|+++..+|..-+...+....+.+...++.+|+|..|.-+++...-..+..+
T Consensus       260 vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~  339 (432)
T PF06963_consen  260 VFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLAL  339 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence            44444444444554445566666666667999999999999999999999999999999999988877776644433322


Q ss_pred             hhh---cc-cc----chHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 009757          181 TPW---AA-DT----SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (526)
Q Consensus       181 ~~~---~~-~~----~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l  248 (526)
                      +..   .+ .+    +...++.+-.+.=+|.=++..+..-++.|..|+++||...|.-....++-.++-..++-.+
T Consensus       340 ~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  340 CVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            221   11 11    3334444445555565566788889999999999999999999999998888877766544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.11  E-value=0.032  Score=53.93  Aligned_cols=159  Identities=9%  Similarity=-0.029  Sum_probs=95.5

Q ss_pred             HHHhHHHHHHHH-hcCCcchhhh-HhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCc
Q 009757          343 ILSWMPIYFNFV-YHIDLRQASW-FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK  420 (526)
Q Consensus       343 ~~~~~~~~~~~~-~g~s~~~~~~-~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (526)
                      ...++..|+.+. .|++..+..- +.-+..-..++..+....+.|.++.|         .++++..+...+...++....
T Consensus        22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk---------pviil~~~~~i~t~~lll~~~   92 (412)
T PF01770_consen   22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK---------PVIILQALSYIITWLLLLFGT   92 (412)
T ss_pred             CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHHC
Confidence            457788888886 7888888654 33333344566667888899999888         444444444333344444445


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHH-HhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhcccc-chhHHHHHHHHHHH
Q 009757          421 SPVMASAWLTLAIGMKSFSHSGFLVNL-QEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELV-GSFQGFLLLTSLLY  498 (526)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~  498 (526)
                      +....-+.-++.+... ..-....+++ ..+++++.-++.+...+...+|.+++..++-.+.... .+|.....+.....
T Consensus        93 sv~~mq~~q~~yg~~~-a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~  171 (412)
T PF01770_consen   93 SVLAMQLMQFFYGLAT-AAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASV  171 (412)
T ss_pred             cHHHHHHHHHHHHHHH-HHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            5444333333222222 2222333332 3444567777888888888888888887777766632 25777766666666


Q ss_pred             HHHHHHHHHHhcC
Q 009757          499 FLSALFYIIFSTG  511 (526)
Q Consensus       499 ~~~~~~~~~~~~~  511 (526)
                      .++.+..+++++.
T Consensus       172 ~~a~~~~~fLP~~  184 (412)
T PF01770_consen  172 SLALLIALFLPMP  184 (412)
T ss_pred             HHHHHHHHHcCCC
Confidence            6667666666543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.02  E-value=0.1  Score=52.00  Aligned_cols=145  Identities=10%  Similarity=-0.016  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC-----CcchhhhHhhHhHHHHHHH-HHHHHHHHHHHHhhcCccchhH
Q 009757          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHI-----DLRQASWFSAVPWSVMAFT-GYLGGLLSDMLIQRGTSVTLTR  398 (526)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~~~~~~~~~~~~~i~-~~~~g~l~dr~~~~~~~~~~~~  398 (526)
                      +++...+..++..+.++..     --++|..+.     +.+...++-....+...+. .++.+++++|++|++..     
T Consensus         8 k~~~~~l~fF~il~~Y~iL-----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf-----   77 (472)
T TIGR00769         8 KFLPLFLMFFCILFNYTIL-----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALF-----   77 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhH-----
Confidence            3445555555544443332     334565555     3345666666555555555 78889999999988432     


Q ss_pred             HHHHHHHHHH--HHHHHHh-hccCch--------------------------hHHHHHHHHHHHHHHhhhhh-hHHHHHH
Q 009757          399 KILQSIGFIA--PGIALIG-LTAAKS--------------------------PVMASAWLTLAIGMKSFSHS-GFLVNLQ  448 (526)
Q Consensus       399 ~~~~~~~~~~--~~~~~~~-~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~  448 (526)
                        ........  ..+..+. .+..+.                          .|......+..-.++..... ..+..++
T Consensus        78 --~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fan  155 (472)
T TIGR00769        78 --YTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFAN  155 (472)
T ss_pred             --HHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11111111  1111111 111100                          12222222222233333343 6788899


Q ss_pred             hhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhc
Q 009757          449 EIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV  481 (526)
Q Consensus       449 ~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~  481 (526)
                      |... ++..+-+++....+++|..+++.+..++.
T Consensus       156 di~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       156 QITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9887 78899999999999999999999988876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.84  E-value=0.0007  Score=59.34  Aligned_cols=65  Identities=3%  Similarity=0.084  Sum_probs=47.8

Q ss_pred             hHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHH
Q 009757          316 PFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG  380 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~  380 (526)
                      +|..-|++-.+....+.+.+.-...+.-..|++.|..+...++....+++-.+..+++...+.+.
T Consensus       193 ~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~  257 (412)
T KOG4830|consen  193 HWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVN  257 (412)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhc
Confidence            44455666667777777888777778888999999888888887777787777777666555443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.65  E-value=0.01  Score=61.15  Aligned_cols=164  Identities=11%  Similarity=0.064  Sum_probs=104.4

Q ss_pred             HHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccC-
Q 009757          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA-  419 (526)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  419 (526)
                      .++....-.-+++.++++..+.|++.+.+-++..+...+..+...|..|.++         +..+.+.++++.++.... 
T Consensus       113 ~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~---------Ig~G~~~m~lgsll~alPH  183 (735)
T KOG3626|consen  113 VGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRW---------IGIGLVLMGLGSLLFALPH  183 (735)
T ss_pred             hhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccce---------eeechhHHHHHHHHHhChH
Confidence            3544444455677799999999999999889988888888888777766532         222333322222221100 


Q ss_pred             -------------------c----------------------------hhHHHHHHHHHHHHHHhhhh----hhHHHHHH
Q 009757          420 -------------------K----------------------------SPVMASAWLTLAIGMKSFSH----SGFLVNLQ  448 (526)
Q Consensus       420 -------------------~----------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  448 (526)
                                         +                            .....+..++++....+++.    +.-..++.
T Consensus       184 f~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiD  263 (735)
T KOG3626|consen  184 FFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYID  263 (735)
T ss_pred             HhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccc
Confidence                               0                            00112223333333333333    23346677


Q ss_pred             hhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhcc------------------ccchhHHHHHHHHHHHHHHHHHHHHHh
Q 009757          449 EIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE------------------LVGSFQGFLLLTSLLYFLSALFYIIFS  509 (526)
Q Consensus       449 ~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (526)
                      |... ++.....|+.+++..+|-++|=.+++++..                  +.|.|+..|++++.+.++..+.+++++
T Consensus       264 Dnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fP  343 (735)
T KOG3626|consen  264 DNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFP  343 (735)
T ss_pred             ccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            7766 578888999999988888888888777653                  335678888899999888888888876


Q ss_pred             cCce
Q 009757          510 TGER  513 (526)
Q Consensus       510 ~~~~  513 (526)
                      +..+
T Consensus       344 k~lp  347 (735)
T KOG3626|consen  344 KELP  347 (735)
T ss_pred             ccCc
Confidence            5543

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.64  E-value=0.014  Score=42.33  Aligned_cols=76  Identities=17%  Similarity=0.219  Sum_probs=55.8

Q ss_pred             HHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhh
Q 009757          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (526)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (526)
                      ..+-+.+...+|...+| .++|..+.+++.+...++..+|.+...++.++..++         .....+++...+.....
T Consensus         5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~m   74 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR---------RLLRAGLLLTVLSTAAM   74 (85)
T ss_pred             hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHH
Confidence            44566777888888888 799999999999999999999999999888775444         34445555555555555


Q ss_pred             ccCchh
Q 009757          417 TAAKSP  422 (526)
Q Consensus       417 ~~~~~~  422 (526)
                      ...++.
T Consensus        75 a~~~~~   80 (85)
T PF06779_consen   75 ALTHSF   80 (85)
T ss_pred             HHHhch
Confidence            444443

Note that many members are hypothetical proteins.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.57  E-value=0.08  Score=52.50  Aligned_cols=111  Identities=16%  Similarity=0.055  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhHhcCh-HHHHHHHHHHHHH---Hhhhhhcc-------ccchHHHHHHHHHhhhhccc
Q 009757          137 GIVQSSFLWGYLVSPIAGGTLVDYYGGK-IIMAWGVALWSLA---TFLTPWAA-------DTSLLALLAMRAVVGLAEGV  205 (526)
Q Consensus       137 g~~~s~~~~~~~~~~~~~G~l~dr~Grr-~~l~~~~~~~~~~---~~~~~~~~-------~~~~~~l~~~r~l~Gig~g~  205 (526)
                      -....++.++-.+|..+..+.. .-++| +.+.+..+.-.+.   .++|..-+       -++-+..++..++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            4556677777777776544321 11222 1333333333222   22332210       03556677779999999999


Q ss_pred             hhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 009757          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (526)
Q Consensus       206 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l  248 (526)
                      .......+..+..++++|..+..+...+..+|..+|..++-.+
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998876544

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.13  Score=50.76  Aligned_cols=106  Identities=14%  Similarity=0.188  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhhhhhhHHHh---HhcChHHHHHHHHHHHHHHhhhhhcc----------------ccchHHHHHHHHHhhh
Q 009757          141 SSFLWGYLVSPIAGGTLVD---YYGGKIIMAWGVALWSLATFLTPWAA----------------DTSLLALLAMRAVVGL  201 (526)
Q Consensus       141 s~~~~~~~~~~~~~G~l~d---r~Grr~~l~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~r~l~Gi  201 (526)
                      -...++..+++.+.+.+.+   ++|+++++.++..+..++.++.-+..                .+++...+++.++.|+
T Consensus       286 ~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~  365 (461)
T KOG3098|consen  286 IGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF  365 (461)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh
Confidence            3444555555666666665   56899999999999988888765542                1246678888999999


Q ss_pred             hccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHH
Q 009757          202 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI  247 (526)
Q Consensus       202 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~  247 (526)
                      +-+......+.++.+.. +++|..+.++...-..++..++......
T Consensus       366 ~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  366 GDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            99999999999999999 5888899999888888877776555443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.45  E-value=0.28  Score=45.79  Aligned_cols=138  Identities=16%  Similarity=0.137  Sum_probs=81.3

Q ss_pred             HHHHHHHHhHHHHHHHHhcCCc--chhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHh
Q 009757          338 WGFFVILSWMPIYFNFVYHIDL--RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG  415 (526)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~s~--~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (526)
                      ..........+.+..+ .+.+.  ...++..+...+...++.++.|.+.||.|+|       +.................
T Consensus        16 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~~~~~~~~~~~~~~~~   87 (338)
T COG0477          16 LDLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR-------KVLIIGLLLFLLGTLLLA   87 (338)
T ss_pred             HhcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch-------HHHHHHHHHHHHHHHHHH
Confidence            3333444556666665 44444  4678888888888888889999999999777       112222211111111111


Q ss_pred             hccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhccc--chhhHHHHHHH-HHhHHHHHHHHHHhhhccc
Q 009757          416 LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ--YSGVLHGISNT-AGTFAAILGTVGAGFFVEL  483 (526)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~-~~~lg~~~~~~~~g~l~~~  483 (526)
                      +......+.............+...+....+..+..|+  .++...+.... ...++..+++.+.+.+...
T Consensus        88 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          88 LAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             hCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21111233333333322223334556666777777774  78888888888 5778888888777776655

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.38  E-value=0.00052  Score=69.73  Aligned_cols=165  Identities=13%  Similarity=0.052  Sum_probs=1.1

Q ss_pred             HHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhc
Q 009757          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (526)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (526)
                      ....++....-.-++.+++++..++|++.+.+-++..+..++..++.+|-.|.+         .+..+.++.+++.+++.
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrpr---------wig~g~~~~~~g~~l~~   86 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPR---------WIGIGALLMGLGSLLFA   86 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc---------eeeecHHHHHHHHHHHh
Confidence            444444444444556669999999999999999999999998888888765542         22333333333333221


Q ss_pred             cC----c------------------------------------------hhHHHHHHHHHHHHHHhhhhh----hHHHHH
Q 009757          418 AA----K------------------------------------------SPVMASAWLTLAIGMKSFSHS----GFLVNL  447 (526)
Q Consensus       418 ~~----~------------------------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~  447 (526)
                      ..    +                                          ........++++-...+++..    .-.+++
T Consensus        87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi  166 (539)
T PF03137_consen   87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI  166 (539)
T ss_dssp             -----------------------------------------------------------------SSS------------
T ss_pred             ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence            00    0                                          001112223333333333333    334556


Q ss_pred             Hhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhcc---------------------ccchhHHHHHHHHHHHHHHHHHH
Q 009757          448 QEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE---------------------LVGSFQGFLLLTSLLYFLSALFY  505 (526)
Q Consensus       448 ~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~---------------------~~g~~~~~~~~~~~~~~~~~~~~  505 (526)
                      .|..+ ++.+...|+..++..+|-++|=.+++...+                     +.|.|+..|++.+.+.++..+.+
T Consensus       167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl  246 (539)
T PF03137_consen  167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL  246 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66655 577888888888888888887777776653                     23456777777777777777776


Q ss_pred             HHHhcC
Q 009757          506 IIFSTG  511 (526)
Q Consensus       506 ~~~~~~  511 (526)
                      +.++|+
T Consensus       247 ~~FPk~  252 (539)
T PF03137_consen  247 FFFPKK  252 (539)
T ss_dssp             ------
T ss_pred             HcCCcc
Confidence            666543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=95.05  E-value=0.27  Score=46.29  Aligned_cols=166  Identities=12%  Similarity=0.051  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHhhhhhhhhcchhhhhhhcCCccc-hhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHH------
Q 009757          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRS-FSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW------  174 (526)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~-~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~------  174 (526)
                      +.+.+++++.....-++.......+.+++-+.- ....-...-.....+..++.|...|+..|+|++...+++-      
T Consensus        30 i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~v  109 (503)
T KOG2601|consen   30 IFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIV  109 (503)
T ss_pred             ehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHH
Confidence            345566676666666777776666666654433 3333333445556777888899999999999887655433      


Q ss_pred             HHHHhhhhhccc----cchHHHHHHHHHhhhhccc----hhhhhHHHHhhhc----Ccchh---hHHHHHHHhhhhhHHH
Q 009757          175 SLATFLTPWAAD----TSLLALLAMRAVVGLAEGV----ALPAMNNMVARWF----PQTER---ARAVAIAMGGFTSGNA  239 (526)
Q Consensus       175 ~~~~~~~~~~~~----~~~~~l~~~r~l~Gig~g~----~~~~~~~~i~~~~----~~~~r---~~~~~~~~~~~~~G~~  239 (526)
                      +.+.++..+...    .++..+..+-++.-...+.    ...-...+-.||.    ..+.+   .++++.....-..-..
T Consensus       110 agglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~  189 (503)
T KOG2601|consen  110 AGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNL  189 (503)
T ss_pred             HHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhc
Confidence            222233333311    2344444443332221111    1111111222332    22333   3444666666667788


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 009757          240 IGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (526)
Q Consensus       240 ig~~l~~~l~~~~gw~~~f~~~~~~~~~  267 (526)
                      +.|++.|.+.+..+-|..-..+++..++
T Consensus       190 Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  190 LAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             hhhhhhcccceeechhhhhhhhHHHHHH
Confidence            9999999999888888765555555444

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.93  E-value=1.4  Score=42.53  Aligned_cols=178  Identities=12%  Similarity=0.090  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHH
Q 009757          327 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF  406 (526)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  406 (526)
                      +..++.........+.+.+-.+.|..+..+.+.  .-.+.....+.+.+..++...+.-+...|.. .+ .+..+....+
T Consensus        21 ~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~-~~-~~~~l~~~~i   96 (406)
T KOG1479|consen   21 LIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLR-TR-VGYLLSLIAI   96 (406)
T ss_pred             HHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHH
Confidence            334444444445566666666666665444443  4444444445554444444444444433310 00 0111111111


Q ss_pred             HHHHHHHHhh--ccCc---hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhc
Q 009757          407 IAPGIALIGL--TAAK---SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFV  481 (526)
Q Consensus       407 ~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~  481 (526)
                      +...+..+.+  ....   ..+.....+.+..+..+......+......++|+....++-.+..+.+.+...-..-...-
T Consensus        97 l~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~  176 (406)
T KOG1479|consen   97 LFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTLTSLLRILTKAAFS  176 (406)
T ss_pred             HHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcchhHhHHHHHHHHHHHHhcC
Confidence            1111222222  1111   1222222333334444555566677777777775544433333333333322222222222


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          482 ELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       482 ~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      |...+-...|.+..++.+++.+++..+
T Consensus       177 ~~~~sA~~yF~~s~~~~llC~i~y~~l  203 (406)
T KOG1479|consen  177 DSRTSALIYFITSTVILLLCFVLYLVL  203 (406)
T ss_pred             CCCceeehhHHHHHHHHHHHHHHHHHh
Confidence            222234556666667777777776644

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.10  E-value=0.47  Score=46.28  Aligned_cols=71  Identities=3%  Similarity=-0.089  Sum_probs=54.3

Q ss_pred             hhhhhhHHHHHHhhcc----cchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          437 SFSHSGFLVNLQEIAP----QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       437 ~~~~~~~~~~~~~~~~----~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      +..=+.......+..+    +++...+..++...++|..++..+.+++.+..| |...|.+.++..+++.+.++.-
T Consensus        48 G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   48 GGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHhC
Confidence            3334555555555544    256778888999999999999999999999988 9999999998888887766554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.99  E-value=0.018  Score=54.42  Aligned_cols=110  Identities=15%  Similarity=-0.012  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHH---hhhhhcc--------ccchHHHHHHHHHhhhhccch
Q 009757          138 IVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT---FLTPWAA--------DTSLLALLAMRAVVGLAEGVA  206 (526)
Q Consensus       138 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~--------~~~~~~l~~~r~l~Gig~g~~  206 (526)
                      .....+.++-.+|..+.++.-=+..+++.+.+..+.-.+..   ++|-..+        -++-+..++.-++.|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            35667888888888877764211113333333333332222   2221110        034466777889999999999


Q ss_pred             hhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHH
Q 009757          207 LPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI  247 (526)
Q Consensus       207 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~  247 (526)
                      ....+.+..+..++++|..+..+......+|..+|..++-.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             -HHHH------------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999898888998888877643

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.77  E-value=0.2  Score=48.53  Aligned_cols=144  Identities=15%  Similarity=0.064  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHH----HhhcCccchhHHHHH
Q 009757          327 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML----IQRGTSVTLTRKILQ  402 (526)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~----~~~~~~~~~~~~~~~  402 (526)
                      .......+...+++..=..++++|+++ .|.+....+.+....-+.+.+.+++.|..+||.    |||+        ..+
T Consensus        35 i~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR--------PfI  105 (498)
T KOG0637|consen   35 ISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR--------PFI  105 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceeccccccccccccccccccc--------chH
Confidence            344444555566666677999999999 799999999988888888999999999999975    5553        233


Q ss_pred             HHHHHHHHHHHHhhccCch-------------hHHHHHHHHHHHHHHh----hhhhhHHHHHHhhcc-cchhh-HHHHHH
Q 009757          403 SIGFIAPGIALIGLTAAKS-------------PVMASAWLTLAIGMKS----FSHSGFLVNLQEIAP-QYSGV-LHGISN  463 (526)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~g~-~~g~~~  463 (526)
                      ........+.+.++.....             ....+...++++...-    ......-++..++.. +++.+ +++...
T Consensus       106 ~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~  185 (498)
T KOG0637|consen  106 LAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS  185 (498)
T ss_pred             HHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence            3333333333333222111             1122333333332222    233344455666654 44444 888888


Q ss_pred             HHHhHHHHHHHHHHhh
Q 009757          464 TAGTFAAILGTVGAGF  479 (526)
Q Consensus       464 ~~~~lg~~~~~~~~g~  479 (526)
                      .+..+|+.+|=.+.++
T Consensus       186 ~f~avGnvLGY~~g~y  201 (498)
T KOG0637|consen  186 FFMAVGNVLGYALGSY  201 (498)
T ss_pred             HHHHhcceeeeecccc
Confidence            8888888777666553

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.71  E-value=0.021  Score=53.93  Aligned_cols=42  Identities=21%  Similarity=0.292  Sum_probs=0.0

Q ss_pred             HHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHH
Q 009757          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLV  243 (526)
Q Consensus       197 ~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~  243 (526)
                      ++.|++.+.......++.+. +|++.    ...+..+.++++++.++
T Consensus         5 ~~~~~~~~~~q~s~~glas~-~p~~y----~~a~~~Gq~~aGv~~s~   46 (309)
T PF01733_consen    5 ALIGFANAVLQSSLFGLASL-FPPKY----TQAVMIGQGLAGVIVSL   46 (309)
T ss_dssp             -----------------------------------------------
T ss_pred             EEEHhhhHHHhccHHHHHhc-CCHHH----HHHHHhhccHHHHHHHH
Confidence            45677777777777777775 55443    33444555555555443

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=92.99  E-value=1  Score=44.49  Aligned_cols=66  Identities=9%  Similarity=-0.009  Sum_probs=53.5

Q ss_pred             HHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchh
Q 009757          191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (526)
Q Consensus       191 ~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~  256 (526)
                      .+++..++..+..-..+++..++-+++.+|.--|..|.+.++..++|+---..+.-++++.+.++.
T Consensus       407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~~  472 (544)
T PF13000_consen  407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVAT  472 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccccc
Confidence            345557777788888889999999999999999999999999999998776666666666655553

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=92.56  E-value=0.73  Score=42.31  Aligned_cols=144  Identities=15%  Similarity=-0.010  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHhhhhhhhhcc--hhhhhhhcCCc-cchhhHHHHHHHHHHHHhhhhhhHHHhH-hcChHHHHHHHHHHHHH
Q 009757          102 SMLALALALCNADRVVMSVA--IVPLSLAHGWS-RSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLA  177 (526)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~s-~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~  177 (526)
                      +-++..++..++........  .|. .+.+..+ +.|.-|....|.+|..+..--.-..-=+ .---..+..-.+++.+.
T Consensus       254 vPL~~VY~~EY~INQGl~ell~F~c-~~g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~  332 (409)
T KOG3880|consen  254 VPLALVYFAEYFINQGLAELLLFPC-SHGFSLSKDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLL  332 (409)
T ss_pred             HHHHHHHHHHHHHhhhhHhhEEecc-ccCCccchhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHH
Confidence            33455566665544433322  122 2333333 3467888888888765543221111000 00011222333444555


Q ss_pred             HhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 009757          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (526)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l  248 (526)
                      ..+..+.  +++|..++.-+.-|+-.|..++...--+.+-.++++|-.+++....+-++|..++..++-.+
T Consensus       333 ~a~~~ft--psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  333 QAWYWFT--PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHhc--cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            5566777  99999999999999999999998888888888899999999999999999998887776544

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.94  E-value=3.3  Score=37.40  Aligned_cols=136  Identities=13%  Similarity=0.082  Sum_probs=85.0

Q ss_pred             hhHHHHHHHHHHHHhhhhhhHHHhHhcCh--HHHHHHHHHHHHHHhhhhhc--ccc---chHHHHHHHHHhhhhccchhh
Q 009757          136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGK--IIMAWGVALWSLATFLTPWA--ADT---SLLALLAMRAVVGLAEGVALP  208 (526)
Q Consensus       136 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr--~~l~~~~~~~~~~~~~~~~~--~~~---~~~~l~~~r~l~Gig~g~~~~  208 (526)
                      .|.+.+.+.+..++|+-+..++..|-.+|  ..+.+..++.++...+..+.  .++   +...-+++-.+.-.+.|.++|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            58999999999999999998888876665  45555555555444432222  111   122224444555566788899


Q ss_pred             hhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 009757          209 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLV  271 (526)
Q Consensus       209 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~  271 (526)
                      ..+.+=+++.|++.|...+.++..-.++-..++-..--.-....+-|..|-++.+...+..+.
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            999999999999999998888776444432222111000000234677888777766655443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=91.58  E-value=6.7  Score=37.57  Aligned_cols=66  Identities=12%  Similarity=0.105  Sum_probs=40.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHH-----HHHhhcCc
Q 009757          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD-----MLIQRGTS  393 (526)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-----r~~~~~~~  393 (526)
                      +.+..+...+.++........ .+|.+++. .|.|-.+.+.....++=  .--.+++..+.|     |+|||+..
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksW  101 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSW  101 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccce
Confidence            345566666666665555544 88988886 57776666554333221  123356666777     99998543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=90.65  E-value=15  Score=34.65  Aligned_cols=143  Identities=18%  Similarity=0.195  Sum_probs=84.5

Q ss_pred             CCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHH----HHHHH---HHHHHhhhhhccccchHHHHHHHHHhhhh
Q 009757          130 GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA----WGVAL---WSLATFLTPWAADTSLLALLAMRAVVGLA  202 (526)
Q Consensus       130 ~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~----~~~~~---~~~~~~~~~~~~~~~~~~l~~~r~l~Gig  202 (526)
                      |-..-|.+.+.+.|...+.+|+...-++.|.--.-+.+.    +|++.   ..+..+.+++-..++-+.+++.-++.|.-
T Consensus        39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L  118 (508)
T COG4262          39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL  118 (508)
T ss_pred             CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            566778899999999999998888877766433322221    12211   11112222222235678889999999999


Q ss_pred             ccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHH-hhcCchhHHHHHHHHHHHHHHHHHh
Q 009757          203 EGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQAGIFGPFVIFGLSGFLWVLVWLS  274 (526)
Q Consensus       203 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~~gw~~~f~~~~~~~~~~~~~~~~  274 (526)
                      .|...|..+.++..-.  .+-....+.....-.+|.+.+.++-.++. ...|.--.-...+.+.++..+...+
T Consensus       119 VG~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~Nl~aAvv~~f  189 (508)
T COG4262         119 VGAEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAAVVTLF  189 (508)
T ss_pred             HhcchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888732  22222333333346677777766655543 4455333333445555555444333

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=90.37  E-value=5.8  Score=40.92  Aligned_cols=169  Identities=16%  Similarity=0.106  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHH
Q 009757          331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPG  410 (526)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  410 (526)
                      ....+-..+++++...+-.|+.+.++.+...+.-....+........+++++++|-+-.|-.        .+.++.++..
T Consensus        44 ~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~--------tI~~~s~i~~  115 (571)
T KOG1237|consen   44 GNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYF--------TINIGSLISL  115 (571)
T ss_pred             HHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHH
Confidence            33444455666677788888888889888777777777777778888999999998765521        1112211111


Q ss_pred             HHHHh-------hccC-------------chhH---HHHHHHHHHHH--HHhhhhhhHHHHHHhhcc-----c--chhhH
Q 009757          411 IALIG-------LTAA-------------KSPV---MASAWLTLAIG--MKSFSHSGFLVNLQEIAP-----Q--YSGVL  458 (526)
Q Consensus       411 ~~~~~-------~~~~-------------~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~--~~g~~  458 (526)
                      +++.+       ....             ..+.   ..+....+...  ..+..-+.......+-.+     +  ....-
T Consensus       116 ~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~f  195 (571)
T KOG1237|consen  116 LGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSF  195 (571)
T ss_pred             HHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccc
Confidence            11111       1000             0011   11111111111  111212334444443333     1  33467


Q ss_pred             HHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          459 HGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       459 ~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      +..+....++|..++..+.-++.+..| |...|.+..++.++++++++..
T Consensus       196 FnW~yf~~~~g~l~a~t~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~~g  244 (571)
T KOG1237|consen  196 FNWFYFSQNGGALLAQTVLVYIQDNVG-WKLGFGIPTVLNALAILIFLPG  244 (571)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhccc-ceeeccHHHHHHHHHHHHHHcC
Confidence            778888889999999999888888776 8888888888877777766543

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=88.60  E-value=5.1  Score=38.14  Aligned_cols=159  Identities=15%  Similarity=0.149  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHH
Q 009757          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI  404 (526)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  404 (526)
                      ....+.+.+++..++--...+-...|+.+-.|-+....+....+-+....+-..+.|...|+..|.|...+..  .+--.
T Consensus        28 ~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L--~lqNl  105 (503)
T KOG2601|consen   28 TVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWL--LLQNL  105 (503)
T ss_pred             eeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHH--hhccH
Confidence            3344556677777777677777777777754544444555545555556666667777888888875432221  11222


Q ss_pred             HHHHHHHHHHhhccCc-----hhHHHHHHHHHHHHHHhhhhhhHH----HHHHh--------hcccchhhHHHHHHHHHh
Q 009757          405 GFIAPGIALIGLTAAK-----SPVMASAWLTLAIGMKSFSHSGFL----VNLQE--------IAPQYSGVLHGISNTAGT  467 (526)
Q Consensus       405 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------~~~~~~g~~~g~~~~~~~  467 (526)
                      +.+.++..+.......     +..++..++++......+......    ....|        -.|.......+..-..-.
T Consensus       106 Sv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq  185 (503)
T KOG2601|consen  106 SVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQ  185 (503)
T ss_pred             HHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhh
Confidence            2333322222222111     222333333333222222211111    00111        111222333356666667


Q ss_pred             HHHHHHHHHHhhhccccc
Q 009757          468 FAAILGTVGAGFFVELVG  485 (526)
Q Consensus       468 lg~~~~~~~~g~l~~~~g  485 (526)
                      ....+.|.+.|.+....+
T Consensus       186 ~tn~Lapv~tg~Iitfvs  203 (503)
T KOG2601|consen  186 STNLLAPVITGLIITFVS  203 (503)
T ss_pred             hhhchhhhhhcccceeec
Confidence            788899999999998766

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=86.98  E-value=35  Score=34.08  Aligned_cols=43  Identities=9%  Similarity=0.046  Sum_probs=37.1

Q ss_pred             hHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhcccc
Q 009757          442 GFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELV  484 (526)
Q Consensus       442 ~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~  484 (526)
                      ..+...+|... ++..+-+++.+...+++..+++.+..++.++.
T Consensus       168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~  211 (509)
T COG3202         168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHR  211 (509)
T ss_pred             HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            56777888887 68899999999999999999999999888743

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=85.54  E-value=25  Score=30.95  Aligned_cols=43  Identities=21%  Similarity=0.270  Sum_probs=24.4

Q ss_pred             chhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 009757          221 TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLS  264 (526)
Q Consensus       221 ~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~  264 (526)
                      +++.+.-.......-++..+|..+++++.+..+.+ ..++.+++
T Consensus       158 ~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~~-al~~~~~~  200 (209)
T PF06912_consen  158 KDRALRRALRYLLIILSFFIGAILGALLYRRLGFW-ALLLPALL  200 (209)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHH
Confidence            33333444455555666777777777777777743 44444433

The function of this family is unknown although a few members are thought to be membrane proteins.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=84.05  E-value=39  Score=32.07  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=23.9

Q ss_pred             HHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHH
Q 009757          349 IYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD  385 (526)
Q Consensus       349 ~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~d  385 (526)
                      .....-.|-+..+.+.+.+.+-....+|+.+.-++.|
T Consensus        32 tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~d   68 (508)
T COG4262          32 TLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLD   68 (508)
T ss_pred             HHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccC
Confidence            3333335667777788877777777777766665544

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=82.98  E-value=11  Score=35.69  Aligned_cols=94  Identities=14%  Similarity=0.028  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHhHhcChHHH--HHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhHHHH
Q 009757          137 GIVQSSFLWGYLVSPIAGGTLVDYYGGKIIM--AWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMV  214 (526)
Q Consensus       137 g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i  214 (526)
                      |..-++..+..+++.+..|.+--++.|..-+  .++.+.-+...+++.-+  ++.|..+++.++.+.-.....+.+..-+
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t--~~Iw~~Ya~yvlfr~~y~l~itiA~~~i  351 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQT--QHIWVCYAGYVLFRVIYQLTITIATFQI  351 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcc--cceehhhhhHHHHHhhHhhhhhHHHHHH
Confidence            6667777788888999999998777776433  34444444444445555  8999999888888887777788888888


Q ss_pred             hhhcCcchhhHHHHHHHh
Q 009757          215 ARWFPQTERARAVAIAMG  232 (526)
Q Consensus       215 ~~~~~~~~r~~~~~~~~~  232 (526)
                      ++....+.-|..+|+...
T Consensus       352 A~nL~~e~~gLvFGiNTF  369 (433)
T KOG3810|consen  352 ARNLSSELFGLVFGINTF  369 (433)
T ss_pred             HHhhhhhhheeeeehHHH
Confidence            888877777777776553

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=82.52  E-value=16  Score=33.09  Aligned_cols=25  Identities=12%  Similarity=-0.145  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH
Q 009757          330 IVANAMHSWGFFVILSWMPIYFNFV  354 (526)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~  354 (526)
                      .+...+.....++....=..|+++.
T Consensus       184 G~~LAv~aGvlyGs~fvPv~Yi~~~  208 (254)
T PF07857_consen  184 GIILAVFAGVLYGSNFVPVIYIQDH  208 (254)
T ss_pred             hHHHHHHHHHHHhcccchHHHHHhC
Confidence            3344444455566555555677764

The region concerned is approximately 280 residues long.

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.83  E-value=6.5  Score=29.59  Aligned_cols=33  Identities=15%  Similarity=0.311  Sum_probs=27.4

Q ss_pred             cchhhHHHHHHHHHhHHHHHHHHHHhhhccccc
Q 009757          453 QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (526)
Q Consensus       453 ~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g  485 (526)
                      +.++.+.++--..-.+++.+.....||+.|++-
T Consensus        38 s~k~~~~a~klssefIsGilVGa~iG~llD~~a   70 (116)
T COG5336          38 SIKGYAQAFKLSSEFISGILVGAGIGWLLDKFA   70 (116)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            457788888888888999999999999999753

>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix

Probab=80.10  E-value=64  Score=31.78  Aligned_cols=30  Identities=23%  Similarity=0.212  Sum_probs=19.7

Q ss_pred             chhhHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 009757          221 TERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (526)
Q Consensus       221 ~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~  250 (526)
                      .+|.+.........-++.++-|+++-+.-.
T Consensus       107 aeR~~~~~~ii~~~l~~~~vy~~~~~w~w~  136 (399)
T PF00909_consen  107 AERIKFSAYIIFGFLWGGLVYPPLAHWVWG  136 (399)
T ss_dssp             CCCCHHHHHHHHHHHCCCCTHHHHHHHHHC
T ss_pred             eceeeehHHHHHHHHHhhhhccccceEEEe
Confidence            356666777666666777777777655544

It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	526
1pw4_A	451	Crystal Structure Of The Glycerol-3-Phosphate Trans		1e-04

>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter From E.Coli Length = 451

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 98/254 (38%), Gaps = 24/254 (9%)
Query: 123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS---LATF 179
           +P  +  G+SR   G   S     Y  S    G++ D    ++ +  G+ L +   L   
Sbjct: 51  MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG 110
Query: 180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA 239
             PWA  +S+  +  +  + G  +G+  P     +  W+ Q ER   V++       G  
Sbjct: 111 FVPWAT-SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 169
Query: 240 IGLVLSPILMS-----QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH--PQISKYELE 292
           I  +L  + M+      A ++ P         L  L   +    TP     P I +Y+ +
Sbjct: 170 IPPLLFLLGMAWFNDWHAALYMP----AFCAILVALFAFAMMRDTPQSCGLPPIEEYKND 225
Query: 293 Y--ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY 350
           Y     EK +  L   +     V+P   +LL     W I +AN       + IL W P Y
Sbjct: 226 YPDDYNEKAEQELTAKQIFMQYVLP--NKLL-----WYIAIANVFVYLLRYGILDWSPTY 278
Query: 351 FNFVYHIDLRQASW 364
              V H  L ++SW
Sbjct: 279 LKEVKHFALDKSSW 292

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	526
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-61
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2cfq_A	417	Lactose permease; transport, transport mechanism,	1e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  207 bits (529), Expect = 2e-61
 Identities = 72/423 (17%), Positives = 147/423 (34%), Gaps = 25/423 (5%)

Query: 97  RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGT 156
           R ++   +    A     R   ++A+ P  +  G+SR   G   S     Y  S    G+
Sbjct: 26  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 84

Query: 157 LVDYYGGKIIMAWGVALWSLATFLTPWA--ADTSLLALLAMRAVVGLAEGVALPAMNNMV 214
           + D    ++ +  G+ L +       +   A +S+  +  +  + G  +G+  P     +
Sbjct: 85  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144

Query: 215 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-----GIFGPFVIFGLSGFLWV 269
             W+ Q ER   V++    +   + +G  + P+L                +      L  
Sbjct: 145 VHWWSQKERGGIVSV----WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 200

Query: 270 LVWLSATSSTPD--RHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW 327
           L   +    TP     P I +Y+ +Y     +K      + +        + +L     W
Sbjct: 201 LFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKA-----EQELTAKQIFMQYVLPNKLLW 255

Query: 328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML 387
            I +AN       + IL W P Y   V H  L ++SW   +          L G +SD +
Sbjct: 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 315

Query: 388 IQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNL 447
            +     T    +      +     +  +  A +P +    + +   +         ++ 
Sbjct: 316 FRGNRGATGVFFMT----LVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHA 371

Query: 448 QEIAP-QYSGVLHGISNTAG-TFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFY 505
            E+AP + +G   G +   G    ++  +   G+ V+  G   GF+++         L  
Sbjct: 372 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431

Query: 506 IIF 508
           ++ 
Sbjct: 432 VVM 434

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 50/355 (14%), Positives = 108/355 (30%), Gaps = 51/355 (14%)

Query: 141 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 200
            ++L  Y VS +  G + D  G + ++  G++++ LAT +      +SL  L+A  A+ G
Sbjct: 42  GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLIAASAMQG 99

Query: 201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG---IFGP 257
           +  GV       +    + +T+   A ++   G      +  ++  +L +       +  
Sbjct: 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159

Query: 258 FVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF 317
            ++        +  W+  T        ++        L                     +
Sbjct: 160 LLVLCAGVTFSMARWMPETRPVDAPRTRL--------LTS-------------------Y 192

Query: 318 RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTG 377
           + L         ++       G     +   +    V  +     S    +P        
Sbjct: 193 KTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAF--- 249

Query: 378 YLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKS 437
             G   +    +R +++            I   +A + +       + + W  L      
Sbjct: 250 -FGAWFAGRPNKRFSTLMW-------QSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALF 301

Query: 438 FSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV---GAGFFVELVGSFQG 489
           F  +G L          SG +      AGT  A++G +   G+G    L      
Sbjct: 302 FFGAGML-----FPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 33/255 (12%), Positives = 64/255 (25%), Gaps = 93/255 (36%)

Query: 180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARW-------FPQTERARAVAIAMG 232
           L      T+   L ++     +AE     ++ + +A W         +       ++   
Sbjct: 318 LPREVLTTNPRRL-SI-----IAE-----SIRDGLATWDNWKHVNCDKLTTIIESSLN-- 364

Query: 233 GFTSGNAIGLVLSPILMSQAGIFGPFVIF--------GLSGFLW---------VLVWLSA 275
                     VL P    +  +F    +F         L   +W         V+V    
Sbjct: 365 ----------VLEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 276 TSSTPDRHPQISKYELEYI-LREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA 334
             S  ++ P+ S   +  I L  K K       H         R ++         +   
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALH---------RSIVDHYN-----IPKT 458

Query: 335 MHSWGFFVILSWMPIYFNFVYHI-----------------DLRQASWFSA------VPWS 371
             S            Y +  +H+                 D R   +           W+
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDSTAWN 515

Query: 372 VMAFTGYLGGLLSDM 386
               +G +   L  +
Sbjct: 516 A---SGSILNTLQQL 527

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 56/393 (14%), Positives = 121/393 (30%), Gaps = 33/393 (8%)

Query: 125 LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL---- 180
           L   +  S+S +GI+ ++     L+     G L D  G +  + W +    +        
Sbjct: 34  LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93

Query: 181 --TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGN 238
              P      L+  +     +G       PA+   + +   ++      A   G    G 
Sbjct: 94  IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFG--CVGW 151

Query: 239 AIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREK 298
           A+G  +  I+ +    F  ++  G +  L VL++ + T +        +           
Sbjct: 152 ALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV---------- 201

Query: 299 QKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHID 358
                    +  A  +     L  +   W + +     S  + V       +F   +   
Sbjct: 202 -------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFF-TSFFAT 253

Query: 359 LRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA 418
             Q +       ++           + ++I R     +  K    +      + +IG + 
Sbjct: 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINR-----IGGKNALLLAGTIMSVRIIGSSF 308

Query: 419 AKSPVMASAWLTL-AIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGT-FAAILGTVG 476
           A S +      TL    +       F     +   ++S  ++ +        A I  +V 
Sbjct: 309 ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368

Query: 477 AGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS 509
           AG   E +G    +L+L  +    + +     S
Sbjct: 369 AGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	526
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	100.0
2xut_A	524	Proton/peptide symporter family protein; transport	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.63
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.51
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.5
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.5
2xut_A	524	Proton/peptide symporter family protein; transport	99.4
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.33
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.29
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	87.51

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=4.6e-42  Score=344.00  Aligned_cols=401  Identities=17%  Similarity=0.204  Sum_probs=316.7

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHH
Q 009757           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (526)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (526)
                      .++.+++.+..+++..+...++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~  100 (451)
T 1pw4_A           22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence            3455677888888999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhh----ccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 009757          173 LWSLATFLTPW----AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (526)
Q Consensus       173 ~~~~~~~~~~~----~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l  248 (526)
                      +.+++.+++++    +  ++++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|.+++++
T Consensus       101 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  178 (451)
T ss_dssp             HHHHHHHHHHHCHHHH--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999    8  89999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhhcC-chhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCch--HHHHHcCch
Q 009757          249 MSQAG-IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP--FRRLLSKMP  325 (526)
Q Consensus       249 ~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  325 (526)
                      .+..| ||+.|++.+++.++..++.++..||+|++....++++.+......     .+++++++....+  .++.+++|.
T Consensus       179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  253 (451)
T 1pw4_A          179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD-----YNEKAEQELTAKQIFMQYVLPNKL  253 (451)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC------------------CCTHHHHHHTSSCHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccccccc-----chhhhhcccccccchHHHHHcCHH
Confidence            89898 999999999988887777777777766543322111100000000     0001111111222  467888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHH--HhhcCccchhHHHHHH
Q 009757          326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML--IQRGTSVTLTRKILQS  403 (526)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--~~~~~~~~~~~~~~~~  403 (526)
                      ++...+..++.......+..++|.|+++.+|++..+++++.+...++.+++.++.+++.||+  ++|        +....
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~  325 (451)
T 1pw4_A          254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--------GATGV  325 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH--------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--------hhHHH
Confidence            99999999999999999999999999998899999999999999999999999999999998  776        12222


Q ss_pred             HHHHHHHHHHHhhccC--chhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhH-HHHHHHHHHhh
Q 009757          404 IGFIAPGIALIGLTAA--KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTF-AAILGTVGAGF  479 (526)
Q Consensus       404 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l-g~~~~~~~~g~  479 (526)
                      ...+...+.++.+...  .+.+......++.+...+...+....+..+..| ++||++.|+.+.+.++ |..++|.+.|+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~  405 (451)
T 1pw4_A          326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  405 (451)
T ss_dssp             HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222333333333  233333333333333333444555666777776 6899999999999999 99999999999


Q ss_pred             hccccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 009757          480 FVELVGSFQGFLLLTSLLYFLSALFYIIFST  510 (526)
Q Consensus       480 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  510 (526)
                      +.|..| +...|++.+++.+++.++.+...+
T Consensus       406 l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  435 (451)
T 1pw4_A          406 TVDFFG-WDGGFMVMIGGSILAVILLIVVMI  435 (451)
T ss_dssp             HHHSSC-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcC-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999988 888888888888777776666543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=8e-40  Score=326.47  Aligned_cols=372  Identities=15%  Similarity=0.093  Sum_probs=300.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHH
Q 009757           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (526)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  175 (526)
                      +++..+..+++..+..+++.....+.+|.+.+++|.+..+.|++.+++.++..++.+++|+++||+|||++++++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            45566777778888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhh---hhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHH-hh
Q 009757          176 LATFLT---PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQ  251 (526)
Q Consensus       176 ~~~~~~---~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~  251 (526)
                      ++.+++   +++  ++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. +.
T Consensus       103 ~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          103 LGAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHhcccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999998   787  999999999999999999999999999999999999999999999999999999999999998 55


Q ss_pred             cC-------------------------chhHHHHHHHHHHHHHHHHHhh-ccCCCCCCCCCChhHHHHHHHhcccccccC
Q 009757          252 AG-------------------------IFGPFVIFGLSGFLWVLVWLSA-TSSTPDRHPQISKYELEYILREKQKPLLMG  305 (526)
Q Consensus       252 ~g-------------------------w~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (526)
                      .+                         ||+.|++.+++.++..++.++. .||.+++.                     +
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---------------------~  239 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---------------------H  239 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---------------------C
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---------------------c
Confidence            54                         9999988887766665554443 22222111                     0


Q ss_pred             CCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHH
Q 009757          306 NKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY-FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLS  384 (526)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~  384 (526)
                      +++++.....++++++++|.++...+..++.......+..++|.| +++.+|++..+++.+.+...++..+++++.+++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~  319 (438)
T 3o7q_A          240 SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLI  319 (438)
T ss_dssp             CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111222334567889999999999999999888899999999999 8887799999999999999999999999999999


Q ss_pred             HHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHH
Q 009757          385 DMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNT  464 (526)
Q Consensus       385 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  464 (526)
                      ||+++|         .....+.++..+.++.....+..+..+...+++.+ .+...+....+..+..|++++++.++.. 
T Consensus       320 ~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  388 (438)
T 3o7q_A          320 SRFAPH---------KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAF-MSIQYPTIFSLGIKNLGQDTKYGSSFIV-  388 (438)
T ss_dssp             HHSCHH---------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HTTHHHHHHHHHHSSCGGGHHHHHHHHH-
T ss_pred             HHhcch---------HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccccchhhHHH-
Confidence            999988         23333444444444444445555544444444433 3444556666666666666888888877 


Q ss_pred             HHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHH
Q 009757          465 AGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLS  501 (526)
Q Consensus       465 ~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  501 (526)
                      ...+++.++|.+.|++.|..|++...|.+.+++.++.
T Consensus       389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            7789999999999999999876777777665554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=9.1e-37  Score=297.82  Aligned_cols=358  Identities=13%  Similarity=0.081  Sum_probs=289.7

Q ss_pred             HHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhh
Q 009757          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (526)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~  181 (526)
                      ..+++..+...+....+.+.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            45667777888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHH
Q 009757          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (526)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~  261 (526)
                      +++  ++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..++|.+++++.+..+||+.|++.
T Consensus        83 ~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           83 VTT--SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            999  999999999999999999999999999999999999999999999999999999999999999888999999998


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHH
Q 009757          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (526)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (526)
                      ++..++..+...+..||+++++++                        +++..+++++.+|+|.++...+..++......
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (375)
T 2gfp_A          161 LVLCAGVTFSMARWMPETRPVDAP------------------------RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIA  216 (375)
T ss_dssp             HHHHHHHHCCCCCSSCCCSTTTCC------------------------CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcccCCCCcc------------------------cccHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence            888777666555555554432210                        11123345678889999999999999889999


Q ss_pred             HHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHH-HHHHHHHHhhcc--
Q 009757          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF-IAPGIALIGLTA--  418 (526)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--  418 (526)
                      .+..+.|.|+++.+|.+..+.+.+.+...++..++.++.+++.||.+++         ....... ...+...+....  
T Consensus       217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~  287 (375)
T 2gfp_A          217 AFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL---------MWQSVICCLLAGLLMWIPDWFG  287 (375)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH---------HHHHHHHHHHTSSSSSHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999998899999999999999999999999999999998864         1221111 111111111111  


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccchhhHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHH
Q 009757          419 AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTS  495 (526)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~  495 (526)
                      .++.+......++.....+...+.......+..|++||++.|+.+...++|..++|.+.|.+.+..+ +...+.+.+
T Consensus       288 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~~~~~~~  363 (375)
T 2gfp_A          288 VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccHHHHHHH
Confidence            1233333333333333344555666777777778999999999999999999999999999987654 666665543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=4.9e-34  Score=288.92  Aligned_cols=413  Identities=15%  Similarity=0.110  Sum_probs=277.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCC--------ccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHH
Q 009757           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGW--------SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKII  166 (526)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~  166 (526)
                      ++.+.+.++.+++.++.++|...++..+|.+.++++.        +..+.|++.+++.+|..++++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            4455666667788888999999999999999887743        34567899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhh------------------ccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHH
Q 009757          167 MAWGVALWSLATFLTPW------------------AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVA  228 (526)
Q Consensus       167 l~~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~  228 (526)
                      ++++.+++.++.+++++                  +  +++++++++|+++|+|.|+..+....+++|+.|+++|++..+
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a--~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~  165 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLA--GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS  165 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGG--GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence            99999999999998884                  5  899999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhh--------cCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCC-CChhHHHHHHHhcc
Q 009757          229 IAMGGFTSGNAIGLVLSPILMSQ--------AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELEYILREKQ  299 (526)
Q Consensus       229 ~~~~~~~~G~~ig~~l~~~l~~~--------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  299 (526)
                      +.+.+..+|.++++.++..+...        .+||..+.+..+..++.. +..+..||+|+.... .++++..+..++..
T Consensus       166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~  244 (491)
T 4gc0_A          166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIM  244 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence            99999999999999988877643        236666666665555443 445566777753211 11111111111100


Q ss_pred             cc-------cccCCCCCCCCCCchHHHHHcCchHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHH
Q 009757          300 KP-------LLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA-MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWS  371 (526)
Q Consensus       300 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~  371 (526)
                      ..       .+..+...+..........++.++......... ....+.+.+..+.+.+.++ .+.+...........++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  323 (491)
T 4gc0_A          245 GNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGV  323 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHH
Confidence            00       000000000000011112333444444333333 3334455566666666665 67777777777788888


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHh----hccCchhHHHHHHHHH-HHHHHhhhhhhHHHH
Q 009757          372 VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG----LTAAKSPVMASAWLTL-AIGMKSFSHSGFLVN  446 (526)
Q Consensus       372 ~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  446 (526)
                      ...++.++.+++.||+|||+         ....+.....+.++.    .......+..+..+++ ..++.....+..+.+
T Consensus       324 ~~~~~~~~~~~l~dr~Grr~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (491)
T 4gc0_A          324 INLTFTVLAIMTVDKFGRKP---------LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVL  394 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCSHH---------HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCcc---------hhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999992         222222222222211    1122222222223322 333333344566788


Q ss_pred             HHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccc-----hhHHHHHHHHHHHHHHHHHH-HHHhcCceeccccc
Q 009757          447 LQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG-----SFQGFLLLTSLLYFLSALFY-IIFSTGERVNFDEA  519 (526)
Q Consensus       447 ~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  519 (526)
                      ..|++| +.|+++.|+.+.++++++++++.+.+.+.+..+     .....|++.+++.+++.+.. ++++++|.++.+|.
T Consensus       395 ~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei  474 (491)
T 4gc0_A          395 LSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEL  474 (491)
T ss_dssp             HHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHH
T ss_pred             HHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHH
Confidence            899998 699999999999999999999999887765421     13345566666666555544 55667777666554


Q ss_pred             c
Q 009757          520 G  520 (526)
Q Consensus       520 ~  520 (526)
                      +
T Consensus       475 ~  475 (491)
T 4gc0_A          475 E  475 (491)
T ss_dssp             G
T ss_pred             H
Confidence            4

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=1.3e-33  Score=285.69  Aligned_cols=373  Identities=14%  Similarity=0.135  Sum_probs=260.4

Q ss_pred             cCCccchhhHHHHHHHHHHHHhhhhhhHHHhH-hcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchh
Q 009757          129 HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVAL  207 (526)
Q Consensus       129 ~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~  207 (526)
                      +|.+..+.|++.+++.++..++++++|+++|| +|||+++.++.++.+++.++++++  ++++.++++|+++|++.+...
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~  126 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--FGASALFGSIILIIIGTGFLK  126 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--CSTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999 899999999999999999999998  999999999999999999999


Q ss_pred             hhhHHHHhhhcCcch--hhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCC--
Q 009757          208 PAMNNMVARWFPQTE--RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH--  283 (526)
Q Consensus       208 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--  283 (526)
                      +...+++.|++|+++  |+.++++++.+.++|..++|.+++.+.+..|||+.|++.++..++..++.++..++..++.  
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL  206 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence            999999999999988  7788888999999999999999999999999999999988777666655554433322111  


Q ss_pred             ---CCCChhHHHHHHHh-----------------cccccccCCC-----------------CCCCCCCchHHHHHcCchH
Q 009757          284 ---PQISKYELEYILRE-----------------KQKPLLMGNK-----------------HKPATVIPPFRRLLSKMPT  326 (526)
Q Consensus       284 ---~~~~~~~~~~~~~~-----------------~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~  326 (526)
                         ...++++.++..+.                 .... ..++.                 ...+.......+..+....
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (491)
T 4aps_A          207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWN-SLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSY  285 (491)
T ss_dssp             CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSC-CTTHHHHHHHHHHHHHHHHHHHHHC------------CTTH
T ss_pred             CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCc-ccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence               11112222211111                 0000 00000                 0000000000111122334


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHH
Q 009757          327 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF  406 (526)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  406 (526)
                      +...+..++....+.....++|.|.++..+.+....+.+.....++..++.++.+++.||++||+...    ...+..+.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~----~~~~~~~~  361 (491)
T 4aps_A          286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS----PTKFAVGL  361 (491)
T ss_dssp             HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc----hHHHHHHH
Confidence            45555556666666667788899999877888788899999999999999999999999999884321    12222333


Q ss_pred             HHHHHHHHhhcc---------CchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHH
Q 009757          407 IAPGIALIGLTA---------AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVG  476 (526)
Q Consensus       407 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~  476 (526)
                      ...++.++.+..         ..+.+......++.....+...+....+..+..| +.||++.|+.+....+|..+++.+
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~  441 (491)
T 4aps_A          362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL  441 (491)
T ss_dssp             HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444443333322         1133333333333333334444555667777777 689999999999999999999999


Q ss_pred             HhhhccccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 009757          477 AGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST  510 (526)
Q Consensus       477 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  510 (526)
                      .+.+.+. + +...|...+++.+++.++.+...+
T Consensus       442 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          442 VTLYNAK-S-EVAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             GGGGGGS-S-TTHHHHHTHHHHHHHHHHHHHC--
T ss_pred             HHHHhcc-c-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988876 3 566677766666666655554433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=100.00  E-value=1.2e-31  Score=264.95  Aligned_cols=369  Identities=15%  Similarity=0.089  Sum_probs=244.9

Q ss_pred             Hhhhhhhhhcchhhh-hhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHH---hhhhhccc
Q 009757          111 CNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT---FLTPWAAD  186 (526)
Q Consensus       111 ~~~~~~~~~~~~~~l-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~  186 (526)
                      .........+.+|.+ .+++|.++.+.|++.+.+.++..++++++|+++||+|||++++++..+.+++.   ....+.  
T Consensus        19 ~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~--   96 (417)
T 2cfq_A           19 YFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG--   96 (417)
T ss_dssp             HHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            333344555666664 55689999999999999999999999999999999999999998888765532   111222  


Q ss_pred             cch-HHHHHHHHHhhhhccchhhhhHHHHhhhcCc--chhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 009757          187 TSL-LALLAMRAVVGLAEGVALPAMNNMVARWFPQ--TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (526)
Q Consensus       187 ~~~-~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~  263 (526)
                      +.. ..++..+++.|++.+...+.....+.++.++  ++++...+.......+|..++|.+++++.+ .+||..|++.++
T Consensus        97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~  175 (417)
T 2cfq_A           97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSG  175 (417)
T ss_dssp             HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence            211 1234556666766665555555555555543  456777888888899999999999999887 589999988776


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 009757          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (526)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (526)
                      ..++..+..++..||+++..+. +++               +++++++....++++++++|+++...+..+.....+..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (417)
T 2cfq_A          176 CALILAVLLFFAKTDAPSSATV-ANA---------------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVF  239 (417)
T ss_dssp             TTTTHHHHSCSSCCCCSCSSCS-SSS---------------SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccccccccc-ccc---------------cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHH
Confidence            6544444333333333211100 000               001111122345667889999887776666655566666


Q ss_pred             HHhHHHHHHHHhc---CCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHhhccCc
Q 009757          344 LSWMPIYFNFVYH---IDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK  420 (526)
Q Consensus       344 ~~~~~~~~~~~~g---~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (526)
                      ..++|.|+.+.++   .+....++..++..++..++.++.+++.||+++|         ..+..+..+.++.++.+...+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~l~~~~~~~~~~~~~~~~~~  310 (417)
T 2cfq_A          240 DQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVRIIGSSFAT  310 (417)
T ss_dssp             HHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH---------HHHHHHHHHHHHHHHHHHHhc
Confidence            6778888877544   2234457777777788889999999999999988         223334444444444444444


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHH-HHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Q 009757          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGIS-NTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLY  498 (526)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~-~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  498 (526)
                      +.+..+...++.........+....+..+..| +.||++.|+. +....+|+.++|.+.|++.+..| +...|.+.+++.
T Consensus       311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~  389 (417)
T 2cfq_A          311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVA  389 (417)
T ss_dssp             SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHH
Confidence            44433333222222223333444567777777 6899999994 78888999999999999999877 888888888877


Q ss_pred             HHHHHHHHHH
Q 009757          499 FLSALFYIIF  508 (526)
Q Consensus       499 ~~~~~~~~~~  508 (526)
                      +++.++.+..
T Consensus       390 l~~~~~~~~~  399 (417)
T 2cfq_A          390 LGFTLISVFT  399 (417)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHHhh
Confidence            7776655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.96  E-value=7.2e-29  Score=253.07  Aligned_cols=165  Identities=18%  Similarity=0.184  Sum_probs=142.6

Q ss_pred             HHHhhhhhhhhcch-hhhhhhcC------CccchhhHHHHHHHHHHHHhhhhhhHHHhHh-cChHHHHHHHHHHHHHHhh
Q 009757          109 ALCNADRVVMSVAI-VPLSLAHG------WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFL  180 (526)
Q Consensus       109 ~~~~~~~~~~~~~~-~~l~~~~~------~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~  180 (526)
                      ++..+......+.+ +.+.+++|      .+..+.|++.+++.++..++.+++|+++||+ |||+++.++.++.+++.++
T Consensus        22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~  101 (524)
T 2xut_A           22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAF  101 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            33333333333344 44667789      9999999999999999999999999999999 9999999999999999999


Q ss_pred             hhhcccc-chHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHH---HHhhhhhHHHHHHHHHHHHHhhcCchh
Q 009757          181 TPWAADT-SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI---AMGGFTSGNAIGLVLSPILMSQAGIFG  256 (526)
Q Consensus       181 ~~~~~~~-~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~ig~~l~~~l~~~~gw~~  256 (526)
                      ++++  + +++.++++|++.|++.+...+...+++.|++|+++|+++.+.   ...+.++|..++|.+++.+.+..|||+
T Consensus       102 ~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  179 (524)
T 2xut_A          102 LAIF--EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAV  179 (524)
T ss_dssp             HHHT--SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHH
T ss_pred             HHHh--cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            9998  8 999999999999999999999999999999999999876666   899999999999999999998899999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 009757          257 PFVIFGLSGFLWVLVWLSA  275 (526)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~  275 (526)
                      .|++.+++.++..+..++.
T Consensus       180 ~f~~~~~~~~~~~~~~~~~  198 (524)
T 2xut_A          180 AFGIPGVLMFVATVFFWLG  198 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999888876665554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.63  E-value=4.2e-15  Score=148.10  Aligned_cols=172  Identities=11%  Similarity=-0.018  Sum_probs=143.9

Q ss_pred             HHHHHHHHhhhhhhhhcchhhhhhh-cCCccchhhHHHHHHHHHHHHhhhhhhHHHhHh--cChHHHHHHHHHHH-HHHh
Q 009757          104 LALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIMAWGVALWS-LATF  179 (526)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l~~~~~~~~-~~~~  179 (526)
                      ..+..++.......+....|.+.++ +|.+..+.+++.+...++..++.++.|++.||+  |||+.+.++.++.. ++.+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  336 (451)
T 1pw4_A          257 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI  336 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            3334444444444555666776666 899999999999999999999999999999999  99999888887776 6666


Q ss_pred             hhhhccccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhh-HHHHHHHHHHHHHhhcCchhHH
Q 009757          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAGIFGPF  258 (526)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~ig~~l~~~l~~~~gw~~~f  258 (526)
                      +..+....+.+.+.+..++.|++.+...+....++.|.+|+++|++++++......+ |..++|.+.+.+.+..||+..|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  416 (451)
T 1pw4_A          337 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF  416 (451)
T ss_dssp             HTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred             HHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            666653237788888889999998988898999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 009757          259 VIFGLSGFLWVLVWLSA  275 (526)
Q Consensus       259 ~~~~~~~~~~~~~~~~~  275 (526)
                      ++.+++.++..++.++.
T Consensus       417 ~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          417 MVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99888877776665554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.51  E-value=1.6e-13  Score=134.96  Aligned_cols=146  Identities=14%  Similarity=0.097  Sum_probs=124.8

Q ss_pred             ccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhhhhccchhhhhH
Q 009757          132 SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMN  211 (526)
Q Consensus       132 s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~  211 (526)
                      +....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.  ++.+.+++..++.+++.+...+...
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~  334 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCF  334 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--CSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566888888888999999999999999999999999998888888777777  7888888888888888777777788


Q ss_pred             HHHhhhcCcchhhHHHHH-HHhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 009757          212 NMVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (526)
Q Consensus       212 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~  279 (526)
                      .++.|.+|++.|+.+.++ ++....+|..++|.+++++.+..|++..|.+.+++.++..++.++..+++
T Consensus       335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            999999999999999999 48888899999999999999988899999988888777766666555543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.50  E-value=1.6e-12  Score=130.83  Aligned_cols=175  Identities=15%  Similarity=0.159  Sum_probs=138.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----hcCCcchhhhHhhHhHHHHHHHHHHHHHHHHH-HHhhcCccchh
Q 009757          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFV-----YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLT  397 (526)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~~~~~~~~~~~  397 (526)
                      +.++...+..++..+.++.+..+++.|+++.     +|.+..+.+++.+...++..++.++.|+++|| +|||       
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-------   85 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR-------   85 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-------
Confidence            3566777777888888889999999999998     89999999999999999999999999999999 8998       


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cc--hhhHHHHHHHHHhHHHHHHH
Q 009757          398 RKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QY--SGVLHGISNTAGTFAAILGT  474 (526)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~g~~~g~~~~~~~lg~~~~~  474 (526)
                        ..+..+.++..+..+.....++.+..++..++.+...+...+....+..+..| ++  |+.+.++.+....+|..++|
T Consensus        86 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  163 (491)
T 4aps_A           86 --PAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAP  163 (491)
T ss_dssp             --HHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHH
Confidence              34455555555555555556666655555555444455556677777777776 56  78889989999999999999


Q ss_pred             HHHhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009757          475 VGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (526)
Q Consensus       475 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (526)
                      .+.+.+.+..| |+..|++.++..+++.++....
T Consensus       164 ~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          164 LIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999887 8999988877777666665544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.50  E-value=4.8e-13  Score=132.59  Aligned_cols=151  Identities=11%  Similarity=0.127  Sum_probs=125.7

Q ss_pred             hhhhhcchhhh-hhh-cCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHH
Q 009757          115 RVVMSVAIVPL-SLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLAL  192 (526)
Q Consensus       115 ~~~~~~~~~~l-~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l  192 (526)
                      ........|.+ .++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++.+++.++..+.  ++.+.+
T Consensus       274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  351 (438)
T 3o7q_A          274 QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGHVGL  351 (438)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--CHHHHH
T ss_pred             HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc--CCcHHH
Confidence            33444455555 554 59999999999999999999999999999999999999999999999998888887  666655


Q ss_pred             HHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHH
Q 009757          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVL  270 (526)
Q Consensus       193 ~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~~~~~  270 (526)
                      +.. ++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..| ++..|++.+++.++..+
T Consensus       352 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          352 IAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            444 8889999999999999999999855 888888877 566999999999999999998 99999887665544433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.40  E-value=5.4e-12  Score=128.18  Aligned_cols=175  Identities=11%  Similarity=0.001  Sum_probs=131.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc------CCcchhhhHhhHhHHHHHHHHHHHHHHHHHH-HhhcCccc
Q 009757          323 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYH------IDLRQASWFSAVPWSVMAFTGYLGGLLSDML-IQRGTSVT  395 (526)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-~~~~~~~~  395 (526)
                      ++.++.+.+..++..+.++.+..+++.|+++.+|      ++..+.+++.+...++..++.++.|+++||+ |||     
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----   85 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY-----   85 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence            3456777788888888888999999999998889      9999999999999999999999999999999 988     


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhccCc-hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHH---HHHHHhHHH
Q 009757          396 LTRKILQSIGFIAPGIALIGLTAAK-SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGI---SNTAGTFAA  470 (526)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~---~~~~~~lg~  470 (526)
                          ..+..+.++..+..+.....+ +.+..++..++.+...+...+....+..+..| ++|+++.+.   .+...++|.
T Consensus        86 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~  161 (524)
T 2xut_A           86 ----NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS  161 (524)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence                233344444444444444444 55555444444444445556666777777776 678766555   899999999


Q ss_pred             HHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHH
Q 009757          471 ILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYII  507 (526)
Q Consensus       471 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  507 (526)
                      .++|.+.+.+.+..| ++..|.+.+++.+++.++.+.
T Consensus       162 ~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          162 FFASLSMPLLLKNFG-AAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHTSTHHHHTSC-HHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998877 888888887776666555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.33  E-value=4.9e-12  Score=122.57  Aligned_cols=165  Identities=8%  Similarity=-0.017  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHH
Q 009757          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (526)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (526)
                      .+.+..++.......+...+|.+.++ +|.+..+.+++.+...++..++.++.|++.||+|||+..         ..+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~---------~~~~~   73 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI---------LVGMS   73 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC---------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH---------HHHHH
Confidence            44555666666777777778877666 899999999999999999999999999999999998432         23333


Q ss_pred             HHHHHHHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHHHHHHHHHHhhhccccch
Q 009757          408 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS  486 (526)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~  486 (526)
                      ...+..+.....++.+......++.+...+...+....+..+..| ++|+++.++.+....+|..++|.+.+++.+..| 
T Consensus        74 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-  152 (375)
T 2gfp_A           74 IFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-  152 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-
Confidence            333333333334455555555444444445556666777777766 799999999999999999999999999998876 


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 009757          487 FQGFLLLTSLLYFLSAL  503 (526)
Q Consensus       487 ~~~~~~~~~~~~~~~~~  503 (526)
                      ++..+.+.+++.++..+
T Consensus       153 ~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          153 WRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888877776655544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.29  E-value=1.4e-10  Score=116.63  Aligned_cols=177  Identities=19%  Similarity=0.092  Sum_probs=130.0

Q ss_pred             HHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhh
Q 009757          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (526)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~  183 (526)
                      .....+........+....+.+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~  361 (491)
T 4gc0_A          282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT  361 (491)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence            33333444444445555667788888888888888888888899999999999999999999999998888887766544


Q ss_pred             cc---ccchHHHHH-HHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHHHh------hcC
Q 009757          184 AA---DTSLLALLA-MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS------QAG  253 (526)
Q Consensus       184 ~~---~~~~~~l~~-~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~------~~g  253 (526)
                      ..   .++...++. .-+..+++. ...+....+.+|.+|.+.|+.+.++......+|..+++.+.+.+.+      ..+
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~  440 (491)
T 4gc0_A          362 AFYTQAPGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH  440 (491)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT
T ss_pred             HHhcccchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            31   122222222 222223332 3356778899999999999999999999999999999887766533      456


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhccCCCC
Q 009757          254 IFGPFVIFGLSGFLWVLVWLSATSSTPD  281 (526)
Q Consensus       254 w~~~f~~~~~~~~~~~~~~~~~~~~~~~  281 (526)
                      +...|++.++++++..+..+++.||+..
T Consensus       441 ~~~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          441 NGFSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence            7788999999998888888888888754

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=87.51  E-value=21  Score=34.30  Aligned_cols=36  Identities=3%  Similarity=-0.209  Sum_probs=18.2

Q ss_pred             hhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhh
Q 009757          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS  236 (526)
Q Consensus       201 ig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  236 (526)
                      +..+.............+..+++.+...+......+
T Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  171 (460)
T 3mkt_A          136 VIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLL  171 (460)
T ss_dssp             GGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            333333344445555666666666655555544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	526
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-23
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	6e-08

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 99.8 bits (247), Expect = 4e-23
 Identities = 72/421 (17%), Positives = 147/421 (34%), Gaps = 11/421 (2%)

Query: 97  RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGT 156
           R ++   +    A     R   ++A+ P  +  G+SR   G   S     Y  S    G+
Sbjct: 23  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 81

Query: 157 LVDYYGGKIIMAWGVALWSLATFLTPW--AADTSLLALLAMRAVVGLAEGVALPAMNNMV 214
           + D    ++ +  G+ L +       +   A +S+  +  +  + G  +G+  P     +
Sbjct: 82  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141

Query: 215 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS 274
             W+ Q ER   V++       G  I  +L  + M+    +   +      F  +LV L 
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMP--AFCAILVALF 199

Query: 275 ATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA 334
           A +   D         +E    +         + +        + +L     W I +AN 
Sbjct: 200 AFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV 259

Query: 335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSV 394
                 + IL W P Y   V H  L ++SW   +          L G +SD + +     
Sbjct: 260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 319

Query: 395 TLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-Q 453
           T     +  +  +     +  +  A +P +    + +   +         ++  E+AP +
Sbjct: 320 T----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK 375

Query: 454 YSGVLHGISNTAGTF-AAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGE 512
            +G   G +   G    ++  +   G+ V+  G   GF+++         L  ++    +
Sbjct: 376 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435

Query: 513 R 513
           R
Sbjct: 436 R 436

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (124), Expect = 6e-08
 Identities = 42/395 (10%), Positives = 94/395 (23%), Gaps = 19/395 (4%)

Query: 116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS 175
                  + L   +  S+S +GI+ ++     L+     G L D  G +  + W +    
Sbjct: 25  AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84

Query: 176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFT 235
           +            LL    +   +     +         A      + +R      G   
Sbjct: 85  VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR 144

Query: 236 SGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL 295
               +G  L   ++          +F L     +++ +    +  D              
Sbjct: 145 MFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDA------------- 191

Query: 296 REKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY 355
                P      +        F   L+        +               +       +
Sbjct: 192 -----PSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANF 246

Query: 356 HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG 415
                         +  +   G L             +    +  L   G I     +  
Sbjct: 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306

Query: 416 LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI-SNTAGTFAAILGT 474
             A  +  +          +       F     +   ++S  ++ +        A I  +
Sbjct: 307 SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366

Query: 475 VGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS 509
           V AG   E +G    +L+L  +    + +     S
Sbjct: 367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	526
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.6
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.49

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.6e-42  Score=338.75  Aligned_cols=410  Identities=17%  Similarity=0.212  Sum_probs=311.5

Q ss_pred             ccccchhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHH
Q 009757           91 EFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWG  170 (526)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  170 (526)
                      +..++.+|.++..++++++..+++...++.+.|.+. |+|+|.+++|++.+++.+++.++++++|+++||+|||+++.++
T Consensus        17 ~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~   95 (447)
T d1pw4a_          17 PTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   95 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            334566788888889999999999989998888776 5899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhcc--ccchHHHHHHHHHhhhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 009757          171 VALWSLATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (526)
Q Consensus       171 ~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l  248 (526)
                      .++.+++.++++++.  .++++.++++|++.|++.|...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_          96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence            999999998887762  147889999999999999999999999999999999999999999999999999999999887


Q ss_pred             Hhh-cCchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHH
Q 009757          249 MSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW  327 (526)
Q Consensus       249 ~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (526)
                      ... .+||+.|++.+++.++..++.++..+++|+.......++.+....+...   ...+++........+..++++.++
T Consensus       176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  252 (447)
T d1pw4a_         176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYN---EKAEQELTAKQIFMQYVLPNKLLW  252 (447)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC----------------CCTHHHHHHTSSCHHHH
T ss_pred             hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchh---hccccccchhhHHHHHHHcCchHH
Confidence            665 4799999999998888888888888777765443322221100000000   011122223334456778899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHH
Q 009757          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (526)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (526)
                      ......++.....+.+..+.|.|+.+.++++..+.+.......++..++.++.|++.||+++++.      .........
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~  326 (447)
T d1pw4a_         253 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR------GATGVFFMT  326 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH------HHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccc------ccccchhHH
Confidence            99999999999999999999999999899999999999999999999999999999999987731      112222222


Q ss_pred             HHHHHHH--hhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHHHHHhHH-HHHHHHHHhhhccc
Q 009757          408 APGIALI--GLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFA-AILGTVGAGFFVEL  483 (526)
Q Consensus       408 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg-~~~~~~~~g~l~~~  483 (526)
                      .......  ......+.+......++.........+.......+..| +.+|++.|+.+.+.+++ ..++|.+.|++.|.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~  406 (447)
T d1pw4a_         327 LVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF  406 (447)
T ss_dssp             HHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222  22233344444444333333333444555666777776 68999999999998874 56789999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 009757          484 VGSFQGFLLLTSLLYFLSALFYIIFSTG  511 (526)
Q Consensus       484 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (526)
                      .| +...+++.+++.+++.++...+..+
T Consensus       407 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         407 FG-WDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             SC-SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hC-hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            98 7777777776666666655554333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=6.2e-29  Score=242.50  Aligned_cols=383  Identities=15%  Similarity=0.062  Sum_probs=261.5

Q ss_pred             HHHHHHHHHhhhhhhhhcchhh-hhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhh
Q 009757          103 MLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (526)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~  181 (526)
                      .+.+.+++..+......+.+|. +.+++|.|++++|++.+++.++..++++++|+++||+|||++++++..+..++..+.
T Consensus        11 ~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~   90 (417)
T d1pv7a_          11 MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF   90 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3444555556666677777776 567789999999999999999999999999999999999999999999998888887


Q ss_pred             hhccccchHH----HHHHHHHhhhhccchhhhhHHHHhhhcCc--chhhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCch
Q 009757          182 PWAADTSLLA----LLAMRAVVGLAEGVALPAMNNMVARWFPQ--TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (526)
Q Consensus       182 ~~~~~~~~~~----l~~~r~l~Gig~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~~gw~  255 (526)
                      .+.  .+...    .++.+.+.+.+.+...........+..++  +++.+..+........+..+++.+++.+.+. +|+
T Consensus        91 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~  167 (417)
T d1pv7a_          91 FIF--IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQ  167 (417)
T ss_dssp             HHH--THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHH
T ss_pred             HHh--hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-ccc
Confidence            776  44433    34556666666665555555544444432  3455677788888899999999999988764 566


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChhHHHHHHHhcccccccCCCCCCCCCCchHHHHHcCchHHHHHHHHHH
Q 009757          256 GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM  335 (526)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (526)
                      ..+........+..++.++..++.+...+..+++                ++.++........+.++++..+........
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (417)
T d1pv7a_         168 FVFWLGSGCALILAVLLFFAKTDAPSSATVANAV----------------GANHSAFSLKLALELFRQPKLWFLSLYVIG  231 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH----------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHhcccccchhhhhhh----------------hhhcccccccccccccccccccchhhhhHH
Confidence            6666666666666666666666655443322211                111222233344455556655555544444


Q ss_pred             HHHHHHHHHHhHHHHHHH---HhcCCcchhhhHhhHhHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHH
Q 009757          336 HSWGFFVILSWMPIYFNF---VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA  412 (526)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (526)
                      ............+.+...   ..+.+....+.......++..++..+.+++.||.+++         .....+..+.++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~  302 (417)
T d1pv7a_         232 VSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVR  302 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH---------HHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccc---------cchhhhHHHHHHh
Confidence            444444433333333322   1344555667777888888899999999999999988         3445555555566


Q ss_pred             HHhhccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHhhcc-cchhhHHHHHH-HHHhHHHHHHHHHHhhhccccchhHHH
Q 009757          413 LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISN-TAGTFAAILGTVGAGFFVELVGSFQGF  490 (526)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~-~~~~lg~~~~~~~~g~l~~~~g~~~~~  490 (526)
                      .+.+...++.+..+...++.....+...+....+..+..| +.|+++.|+.. ....+|..++|.+.|++.|..| +...
T Consensus       303 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~  381 (417)
T d1pv7a_         303 IIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGA  381 (417)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHH
T ss_pred             hhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHH
Confidence            6666666666666655555444455556666667777766 78999999865 4567999999999999999998 8888


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcee
Q 009757          491 LLLTSLLYFLSALFYIIFSTGERV  514 (526)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~~  514 (526)
                      +++.+++.+++.++..+..++++.
T Consensus       382 ~~~~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         382 YLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCc
Confidence            888887777776666665444443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=2.8e-15  Score=144.54  Aligned_cols=157  Identities=13%  Similarity=0.081  Sum_probs=138.5

Q ss_pred             chhhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHhh
Q 009757          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (526)
Q Consensus       121 ~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  200 (526)
                      ..+...++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.  ++.+.+++..++.|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g  323 (417)
T d1pv7a_         246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHM  323 (417)
T ss_dssp             HHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC--CCHHHHHHHHHHHH
T ss_pred             cccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc--cccchhhHHHHHHH
Confidence            3444445556677788889999999999999999999999999999999999999999999998  99999999999999


Q ss_pred             hhccchhhhhHHHHhhhcCcchhhHHHHHH-HhhhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 009757          201 LAEGVALPAMNNMVARWFPQTERARAVAIA-MGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (526)
Q Consensus       201 ig~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~  279 (526)
                      ++.+...+...+++.|.+|+++|+++.++. +....+|..++|.++|++.+..||+..|++.+++.++..++.++..+++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999985 5567799999999999999999999999999988887777666665443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=2.1e-13  Score=133.00  Aligned_cols=154  Identities=12%  Similarity=0.001  Sum_probs=121.5

Q ss_pred             hhhhhhcCCccchhhHHHHHHHHHHHHhhhhhhHHHhHhcChHHHHHH---HHHHHHHHhhhhhccccchHHHHHHHHHh
Q 009757          123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWG---VALWSLATFLTPWAADTSLLALLAMRAVV  199 (526)
Q Consensus       123 ~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  199 (526)
                      ..+.+.++.+..+.++..+...++..++.++.|++.||++||+.....   ..+..++.++.......+.+..+++-++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (447)
T d1pw4a_         274 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI  353 (447)
T ss_dssp             HHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred             hhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            345566789999999999999999999999999999999986533322   22333333333333336778888888899


Q ss_pred             hhhccchhhhhHHHHhhhcCcchhhHHHHHHHhhhhh-HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhc
Q 009757          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (526)
Q Consensus       200 Gig~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~ig~~l~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  276 (526)
                      |++.+...+....++.|.+|++.|+++.|+.+....+ |.+++|.+.+++.+..||+..|++.++..++..++..++.
T Consensus       354 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         354 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888899999999999999999999999887776 5677899999999999999999888777776665555443