Citrus Sinensis ID: 009772

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520------
MSNINTMEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGGLWSIVNSGLKLKFFKPS
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHccHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccccccccccccccEEEHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccEEccccHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
ccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccEEEEEEcHHEEEHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHEHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
msnintmeerpetelisipatprastpevltpsgqrsprpaskeaksstawtptsfisprflspigtpMKRVLVNMKGYLEEvghltklnpqdawlpitesrngnahYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHeavpgkryNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVcgplcssnplttVEWYLVFTSLCIVLsqlpnlnsiagLSLIGAITAVTYSTMVWVLSvsqprppnisyeplssaspaaTVFSVMNALGIIAFAFRGHNLAMEIQatmpstfkhpahvpmwrGAKVAYLFIAMCLFPVaiggfwaygnlmpsgGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSsfqiysmpvfdsfeasytsrtnrpcsiwvrsGFRVFYGFVSFFIGVALPFLSSLAgllggltlpvtfaypcfmwvlikkptkysfNWYFNWILGWLGVAFSLAFSIGGLWSIVNSglklkffkps
msnintmeerpetelisipatprastpevltpsgqrsprpaskeaksstawtptsfisprflspigTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGGLWSIVNSGLKLKFFKPS
MSNINTMEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGValpflsslagllggltlpvtfAYPCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGGLWSIVNSGLKLKFFKPS
****************************************************PTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSV******************AATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGGLWSIVNSGLKLKFF***
*****************************************************************************************************RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGGLWSIVNSGLKLKFFK**
*************ELISIPATP*****************************TPTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGGLWSIVNSGLKLKFFKPS
*************ELISIPATPRASTPEV****************************SPRF*SP***P***VLVNMK***********LNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGGLWSIVNSGLKLKFF***
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MSNINTMEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGGLWSIVNSGLKLKFFKPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query526 2.2.26 [Sep-21-2011]
Q9SX98519 Lysine histidine transpor yes no 0.982 0.996 0.890 0.0
Q84WE9478 Lysine histidine transpor no no 0.813 0.895 0.430 1e-104
Q9FKS8446 Lysine histidine transpor no no 0.796 0.939 0.392 2e-83
Q9LRB5441 Lysine histidine transpor no no 0.807 0.963 0.386 8e-83
Q9C733453 Lysine histidine transpor no no 0.821 0.953 0.389 6e-81
O22719451 Lysine histidine transpor no no 0.788 0.920 0.376 3e-78
Q9SR44441 Lysine histidine transpor no no 0.809 0.965 0.376 1e-77
Q9C6M2440 Lysine histidine transpor no no 0.806 0.963 0.375 1e-74
Q9SS86455 Lysine histidine transpor no no 0.768 0.887 0.371 9e-73
Q9C9J0448 Lysine histidine transpor no no 0.828 0.973 0.334 7e-61
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/519 (89%), Positives = 492/519 (94%), Gaps = 2/519 (0%)

Query: 7   MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 66
           M+ERPETELISIPATPR STPE+LTPSGQRSPRPA+K   SS  WTPTSFISPRFLSPIG
Sbjct: 1   MDERPETELISIPATPRVSTPEILTPSGQRSPRPATKP--SSATWTPTSFISPRFLSPIG 58

Query: 67  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLP 126
           TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQAL+LP
Sbjct: 59  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLP 118

Query: 127 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 186
           VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL
Sbjct: 119 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 178

Query: 187 ALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246
           ALFPTVYLSAGTAT LIL+GGETMK+FFQIVCGPLC+SNPLTTVEWYLVFTSLCIVLSQL
Sbjct: 179 ALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCTSNPLTTVEWYLVFTSLCIVLSQL 238

Query: 247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGI 306
           PNLNSIAGLSLIGA+TA+TYSTMVWVLSVSQPRP  ISYEPLS  S + ++F+V+NALGI
Sbjct: 239 PNLNSIAGLSLIGAVTAITYSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFAVLNALGI 298

Query: 307 IAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLM 366
           IAFAFRGHNL +EIQ+TMPSTFKHPAHVPMWRGAK++Y  IA+C+FP++IGGFWAYGNLM
Sbjct: 299 IAFAFRGHNLVLEIQSTMPSTFKHPAHVPMWRGAKISYFLIALCIFPISIGGFWAYGNLM 358

Query: 367 PSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPC 426
           PSGGML AL+ FH HDI RGLLA  FLLVVF+CLSSFQIYSMP FDSFEA YTSRTN+PC
Sbjct: 359 PSGGMLAALYAFHIHDIPRGLLATAFLLVVFSCLSSFQIYSMPAFDSFEAGYTSRTNKPC 418

Query: 427 SIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPTKYSF 486
           SIWVRSGFRVF+GFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKP KYSF
Sbjct: 419 SIWVRSGFRVFFGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPAKYSF 478

Query: 487 NWYFNWILGWLGVAFSLAFSIGGLWSIVNSGLKLKFFKP 525
           NWYF+W LGWLGVAFSLAFSIGG+WS+V +GLKLKFFKP
Sbjct: 479 NWYFHWGLGWLGVAFSLAFSIGGIWSMVTNGLKLKFFKP 517
Amino acid transporter.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query526
224137338521 lysine/histidine transporter [Populus tr 0.986 0.996 0.940 0.0
449446959520 PREDICTED: lysine histidine transporter- 0.988 1.0 0.919 0.0
255538442521 amino acid transporter, putative [Ricinu 0.986 0.996 0.922 0.0
449498672520 PREDICTED: LOW QUALITY PROTEIN: lysine h 0.988 1.0 0.915 0.0
225458487514 PREDICTED: lysine histidine transporter- 0.977 1.0 0.923 0.0
356555048516 PREDICTED: lysine histidine transporter- 0.980 1.0 0.905 0.0
357446379520 Lysine/histidine transporter [Medicago t 0.988 1.0 0.886 0.0
297852368519 amino acid transporter family protein [A 0.982 0.996 0.892 0.0
356549399516 PREDICTED: lysine histidine transporter- 0.980 1.0 0.898 0.0
15220283519 Lysine histidine transporter-like 8 [Ara 0.982 0.996 0.890 0.0
>gi|224137338|ref|XP_002327101.1| lysine/histidine transporter [Populus trichocarpa] gi|222835416|gb|EEE73851.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  974 bits (2519), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/519 (94%), Positives = 509/519 (98%)

Query: 7   MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 66
           MEERPETELISIPATPRASTPE+LTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG
Sbjct: 1   MEERPETELISIPATPRASTPEILTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 60

Query: 67  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLP 126
           TPMKRVL+NMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQAL+LP
Sbjct: 61  TPMKRVLINMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLP 120

Query: 127 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 186
           VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLG+WL
Sbjct: 121 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGLWL 180

Query: 187 ALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246
           ALFPTVYLSAGTAT LIL+GGETMK+FFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL
Sbjct: 181 ALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 240

Query: 247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGI 306
           PNLNSIAGLSLIGAITA+TYSTMVWVLSVSQ RPP ISYEPLS  S +A+VFSVMNALGI
Sbjct: 241 PNLNSIAGLSLIGAITAITYSTMVWVLSVSQQRPPTISYEPLSLPSFSASVFSVMNALGI 300

Query: 307 IAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLM 366
           +AFAFRGHNLAMEIQATMPSTFKHPAHVPMW+GAKVAY FIA+CLFPVAIGGFWAYGNLM
Sbjct: 301 VAFAFRGHNLAMEIQATMPSTFKHPAHVPMWKGAKVAYFFIALCLFPVAIGGFWAYGNLM 360

Query: 367 PSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPC 426
           PSGG+L AL+ FHSHDI RGLLA+TFLLVVFNCLSSFQIYSMPVFDSFEASYT+RTNRPC
Sbjct: 361 PSGGILNALYGFHSHDIPRGLLAMTFLLVVFNCLSSFQIYSMPVFDSFEASYTTRTNRPC 420

Query: 427 SIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPTKYSF 486
           SIWVRSGFRVFYGF+SFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKP+KYSF
Sbjct: 421 SIWVRSGFRVFYGFISFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPSKYSF 480

Query: 487 NWYFNWILGWLGVAFSLAFSIGGLWSIVNSGLKLKFFKP 525
           NWYFNWILGWLG+AFSLAFSIGG+WS+VNSGLKLKFFKP
Sbjct: 481 NWYFNWILGWLGIAFSLAFSIGGVWSMVNSGLKLKFFKP 519

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449446959|ref|XP_004141237.1| PREDICTED: lysine histidine transporter-like 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255538442|ref|XP_002510286.1| amino acid transporter, putative [Ricinus communis] gi|223550987|gb|EEF52473.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449498672|ref|XP_004160601.1| PREDICTED: LOW QUALITY PROTEIN: lysine histidine transporter-like 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225458487|ref|XP_002284114.1| PREDICTED: lysine histidine transporter-like 8 [Vitis vinifera] gi|302142384|emb|CBI19587.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356555048|ref|XP_003545851.1| PREDICTED: lysine histidine transporter-like 8-like [Glycine max] Back     alignment and taxonomy information
>gi|357446379|ref|XP_003593467.1| Lysine/histidine transporter [Medicago truncatula] gi|355482515|gb|AES63718.1| Lysine/histidine transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|297852368|ref|XP_002894065.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297339907|gb|EFH70324.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356549399|ref|XP_003543081.1| PREDICTED: lysine histidine transporter-like 8-like [Glycine max] Back     alignment and taxonomy information
>gi|15220283|ref|NP_175198.1| Lysine histidine transporter-like 8 [Arabidopsis thaliana] gi|75266609|sp|Q9SX98.1|LHTL8_ARATH RecName: Full=Lysine histidine transporter-like 8; AltName: Full=Amino acid transporter-like protein 1 gi|5668793|gb|AAD46019.1|AC007519_4 Similar to gb|U39782 lysine and histidine specific transporter from Arabidopsis thaliana. EST gb|Z17527 comes from this gene [Arabidopsis thaliana] gi|17529318|gb|AAL38886.1| putative lysine and histidine specific transporter protein [Arabidopsis thaliana] gi|21436363|gb|AAM51351.1| putative lysine and histidine specific transporter protein [Arabidopsis thaliana] gi|332194078|gb|AEE32199.1| Lysine histidine transporter-like 8 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query526
TAIR|locus:2015383519 AT1G47670 [Arabidopsis thalian 0.982 0.996 0.849 1.1e-247
TAIR|locus:2132816478 LHT7 "LYS/HIS transporter 7" [ 0.870 0.958 0.391 7e-93
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.800 0.954 0.387 4.1e-81
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.817 0.975 0.379 8.7e-79
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.809 0.965 0.372 1.6e-77
TAIR|locus:2008154453 AT1G48640 [Arabidopsis thalian 0.815 0.947 0.376 2.1e-77
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.792 0.934 0.382 2.7e-77
TAIR|locus:2008435451 AT1G61270 [Arabidopsis thalian 0.779 0.909 0.361 1.6e-72
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.798 0.954 0.361 5.3e-72
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.794 0.933 0.329 3e-62
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2386 (845.0 bits), Expect = 1.1e-247, P = 1.1e-247
 Identities = 441/519 (84%), Positives = 471/519 (90%)

Query:     7 MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 66
             M+ERPETELISIPATPR STPE+LTPSGQRSPRPA+K   SS  WTPTSFISPRFLSPIG
Sbjct:     1 MDERPETELISIPATPRVSTPEILTPSGQRSPRPATKP--SSATWTPTSFISPRFLSPIG 58

Query:    67 TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLP 126
             TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQAL+LP
Sbjct:    59 TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLP 118

Query:   127 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 186
             VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL
Sbjct:   119 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 178

Query:   187 ALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246
             ALFPTVYLSAGTAT LIL+GGETMK+FFQIVCGPLC+SNPLTTVEWYLVFTSLCIVLSQL
Sbjct:   179 ALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCTSNPLTTVEWYLVFTSLCIVLSQL 238

Query:   247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGI 306
             PNLNSIAGLSLIGA+TA+TYSTMVWVLSVSQPRP  ISYEPLS  S + ++F+V+NALGI
Sbjct:   239 PNLNSIAGLSLIGAVTAITYSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFAVLNALGI 298

Query:   307 IAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLM 366
             IAFAFRGHNL +EIQ+TMPSTFKHPAHVPMWRGAK++Y  IA+C+FP++IGGFWAYGNLM
Sbjct:   299 IAFAFRGHNLVLEIQSTMPSTFKHPAHVPMWRGAKISYFLIALCIFPISIGGFWAYGNLM 358

Query:   367 PSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPC 426
             PSGGML AL+ FH HDI RGLLA  FLLVVF+CLSSFQIYSMP FDSFEA YTSRTN+PC
Sbjct:   359 PSGGMLAALYAFHIHDIPRGLLATAFLLVVFSCLSSFQIYSMPAFDSFEAGYTSRTNKPC 418

Query:   427 SIWVRSGFRVFYGFVSFFIGVXXXXXXXXXXXXXXXXXXXXXAYPCFMWVLIKKPTKYSF 486
             SIWVRSGFRVF+GFVSFFIGV                     AYPCFMWVLIKKP KYSF
Sbjct:   419 SIWVRSGFRVFFGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPAKYSF 478

Query:   487 NWYFNWILGWLGVAFSLAFSIGGLWSIVNSGLKLKFFKP 525
             NWYF+W LGWLGVAFSLAFSIGG+WS+V +GLKLKFFKP
Sbjct:   479 NWYFHWGLGWLGVAFSLAFSIGGIWSMVTNGLKLKFFKP 517
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0010075 "regulation of meristem growth" evidence=RCA
TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SX98LHTL8_ARATHNo assigned EC number0.89010.98280.9961yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 2e-49
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 6e-05
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  174 bits (444), Expect = 2e-49
 Identities = 109/423 (25%), Positives = 177/423 (41%), Gaps = 34/423 (8%)

Query: 102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHE- 160
              +A  A F+ + A +G   L LP AF  LGW  G++ L I     LYTL +LVQ  + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 161 --AVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVC 218
              V GKR   Y +L    FG +  + +     V L  G   + ++  G+ +   F    
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNL-FGVCISYLIFAGDNLPAIFDSFF 119

Query: 219 GPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAI---TAVTYSTMVWVLSV 275
                S       + ++F  + I LS +PNL++++ LSL+ A+     V     V  L V
Sbjct: 120 DTCHISLVY----FIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGV 175

Query: 276 SQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAH-V 334
              +   +      +    A +F    A+GII FAF GH + + IQ TM    K P+   
Sbjct: 176 LTAQG--VGSLGAKTNIKLARLFL---AIGIIVFAFEGHAVLLPIQNTM----KSPSKFK 226

Query: 335 PMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLL 394
            M +    A + + +    V + G+ A+GN +    +L         DI+  LL +  LL
Sbjct: 227 AMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLL 286

Query: 395 VVFNCLSSFQIYSMPVFDSFEAS----YTSRTNRPCSIWVRSGFRVFYGFVSFFIGVALP 450
                  S+ + + P+    E        S  + P S  +R   R     +++ I +++P
Sbjct: 287 -------SYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVP 339

Query: 451 FLSSLAGLLGGLT-LPVTFAYPCFMWVLIKKPTKYSFNWYFNW-ILGWLGVAFSLAFSIG 508
           FL     L+G  +  P+TF  P    + +KK  K S    +   IL  + +   L     
Sbjct: 340 FLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAY 399

Query: 509 GLW 511
           G+ 
Sbjct: 400 GVA 402

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 526
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PRK10483414 tryptophan permease; Provisional 99.94
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.93
PRK09664415 tryptophan permease TnaB; Provisional 99.93
PRK15132403 tyrosine transporter TyrP; Provisional 99.93
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.92
PRK13629443 threonine/serine transporter TdcC; Provisional 99.86
TIGR00814397 stp serine transporter. The HAAAP family includes 99.82
PRK10655438 potE putrescine transporter; Provisional 99.48
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.41
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.41
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.4
PRK10644445 arginine:agmatin antiporter; Provisional 99.4
PRK11021410 putative transporter; Provisional 99.4
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.39
PRK10249458 phenylalanine transporter; Provisional 99.35
TIGR00909429 2A0306 amino acid transporter. 99.34
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.3
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.29
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.26
PRK11387471 S-methylmethionine transporter; Provisional 99.25
PRK15049499 L-asparagine permease; Provisional 99.25
PRK10746461 putative transport protein YifK; Provisional 99.25
TIGR00930 953 2a30 K-Cl cotransporter. 99.24
PRK10580457 proY putative proline-specific permease; Provision 99.24
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.24
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.23
TIGR00911501 2A0308 L-type amino acid transporter. 99.21
PRK10238456 aromatic amino acid transporter; Provisional 99.21
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.2
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.18
TIGR00913478 2A0310 amino acid permease (yeast). 99.15
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.12
PRK10836489 lysine transporter; Provisional 99.05
PF03845320 Spore_permease: Spore germination protein; InterPr 99.03
COG0531466 PotE Amino acid transporters [Amino acid transport 98.86
PRK15238496 inner membrane transporter YjeM; Provisional 98.84
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 98.8
TIGR00907482 2A0304 amino acid permease (GABA permease). 98.77
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 98.69
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.64
KOG3832319 consensus Predicted amino acid transporter [Genera 98.52
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.48
COG0833541 LysP Amino acid transporters [Amino acid transport 98.44
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.33
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.33
PRK11375484 allantoin permease; Provisional 98.28
COG3949349 Uncharacterized membrane protein [Function unknown 98.18
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.15
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.06
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.03
KOG1286554 consensus Amino acid transporters [Amino acid tran 97.99
KOG1289550 consensus Amino acid transporters [Amino acid tran 97.64
TIGR00813407 sss transporter, SSS family. have different number 97.62
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.5
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.49
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.45
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.3
COG1457442 CodB Purine-cytosine permease and related proteins 97.27
PRK11017404 codB cytosine permease; Provisional 96.99
PRK12488549 acetate permease; Provisional 96.9
TIGR00835425 agcS amino acid carrier protein. Members of the AG 96.77
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 96.66
PRK10484523 putative transporter; Provisional 96.64
PF01566358 Nramp: Natural resistance-associated macrophage pr 96.62
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.51
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 96.39
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 96.38
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 96.28
PRK15419502 proline:sodium symporter PutP; Provisional 96.15
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 95.74
COG0733439 Na+-dependent transporters of the SNF family [Gene 95.35
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 95.31
PRK00701439 manganese transport protein MntH; Reviewed 95.28
PRK15433439 branched-chain amino acid transport system 2 carri 95.07
PRK09395551 actP acetate permease; Provisional 94.76
PRK15015 701 carbon starvation protein A; Provisional 92.44
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 91.29
COG1966 575 CstA Carbon starvation protein, predicted membrane 90.92
KOG1288 945 consensus Amino acid transporters [Amino acid tran 89.96
COG4147529 DhlC Predicted symporter [General function predict 89.79
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 88.56
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 88.11
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 87.24
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 85.55
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 84.89
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 84.33
KOG2466572 consensus Uridine permease/thiamine transporter/al 83.67
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 81.67
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-62  Score=504.92  Aligned_cols=408  Identities=36%  Similarity=0.608  Sum_probs=363.8

Q ss_pred             CCCCCCCCcccccccCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHch---hhcCC
Q 009772           88 KLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLH---EAVPG  164 (526)
Q Consensus        88 ~~~~~~~~l~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~---~~~~g  164 (526)
                      +..+.|+|.+.+++|++|++++++|.++.++|.|+|+||||++++||..|++++++.++++.||..+|.+|.   +..++
T Consensus        22 ~~~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~  101 (437)
T KOG1303|consen   22 RKSDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPG  101 (437)
T ss_pred             cccccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            445777888889999999999999999999999999999999999999999999999999999999998884   44567


Q ss_pred             ccccCHHHHHHHHhcccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHHHHhhh
Q 009772          165 KRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS  244 (526)
Q Consensus       165 ~r~~sY~~l~~~~~G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~~L~  244 (526)
                      +|..+|.|+++++||++. ++++...+...++|+|+.|++..+|+++.+++..+.+.+   .++.+.|+++++++++|++
T Consensus       102 ~r~~~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~---~l~~~~f~iif~~i~~~~s  177 (437)
T KOG1303|consen  102 KRRYRYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN---SLDKQYFIIIFGLIVLPLS  177 (437)
T ss_pred             ccCCChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---cccceehhhhHHHHHHHHH
Confidence            788999999999999975 888888888889999999999999999999999887521   4557899999999999999


Q ss_pred             cCCCcchhhHhHHHHHHHHHHHHHhhhhhhcccCCCCCCC-CCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhh
Q 009772          245 QLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNIS-YEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQAT  323 (526)
Q Consensus       245 ~l~~l~~l~~~S~~~~~~~~~~~~ii~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~  323 (526)
                      ++||+++++++|..++++++.|+++.++.++.+|...+.. .+ ........   ..++++|+++|+|.||+++||||++
T Consensus       178 ~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~-~~~~~~~~---~~f~a~g~iaFaf~gH~v~peIq~t  253 (437)
T KOG1303|consen  178 QLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGG-YLDLGTIP---TVFTALGIIAFAYGGHAVLPEIQHT  253 (437)
T ss_pred             HCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccC-cccCCCCc---chhhhhhheeeeecCCeeeeehHhh
Confidence            9999999999999999999999999999998888644222 22 11111111   1189999999999999999999999


Q ss_pred             CCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhh
Q 009772          324 MPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLMPSGGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSF  403 (526)
Q Consensus       324 m~~~~k~p~~~~m~~v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sy  403 (526)
                      |    |+|.+  |+|++.+++.+++++|+.+++.||++|||++++ +++.|+      ..|.|+...+++++.+|++.+|
T Consensus       254 M----k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~-~il~s~------~~p~~~~~~ani~i~~h~i~s~  320 (437)
T KOG1303|consen  254 M----KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPD-NILLSL------QPPTWLIALANILIVLHLIGSY  320 (437)
T ss_pred             c----CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccch-hhhhcc------cCchhHHHHHHHHHHHHHhhhh
Confidence            9    77877  669999999999999999999999999999996 999999      3578999999999999999999


Q ss_pred             hccchhHHHHHHhhhcccccc-c-cccchhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhh-chhhhHhhHHHHHhhC
Q 009772          404 QIYSMPVFDSFEASYTSRTNR-P-CSIWVRSGFRVFYGFVSFFIGVALPFLSSLAGLLGGLTL-PVTFAYPCFMWVLIKK  480 (526)
Q Consensus       404 pl~~~p~~~~le~~~~~~~~~-~-~~~~~r~~~r~~~~~~~~~iA~~vP~~~~vi~lvGa~~~-~l~filP~l~~lk~~~  480 (526)
                      +++..|+.+.+|+....++++ + +..+.|.+.|+.+++.++++|+.+|+|+++++++||+.. ++++++||+||++.+|
T Consensus       321 ~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k  400 (437)
T KOG1303|consen  321 QIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKK  400 (437)
T ss_pred             hhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999998755441 1 345789999999999999999999999999999999999 9999999999999999


Q ss_pred             CCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Q 009772          481 PTKYSFNWYFNWIL-GWLGVAFSLAFSIGGLWSIVNS  516 (526)
Q Consensus       481 ~~~~~~~~~~~~~l-~~~g~~~~v~g~~~si~~ii~~  516 (526)
                      ++++..+|+.+|.+ .++|+++++...++++++++.+
T Consensus       401 ~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  401 PKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             hhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            99999999999999 7999999999999999998753

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query526
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.63
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.38
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.2
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.49
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 97.52
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.36
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 94.14
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.63  E-value=4.6e-14  Score=148.36  Aligned_cols=378  Identities=15%  Similarity=0.098  Sum_probs=204.1

Q ss_pred             cccCCChhHHHHHHHhhhhhhhhchhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHhc
Q 009772          100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (526)
Q Consensus       100 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~G  179 (526)
                      ++|+-+.++.++..+++++|+|++.+|...++.|. .+++..++.++........+.+...+.|.  ...+.+.+++.+|
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~--~Gg~y~~~~~~~G   82 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPS--PGGSYAYARRCFG   82 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--TTTHHHHHHHHSC
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCC--CCCchhhHHhHcC
Confidence            34678899999999999999999999999998886 47778888888888888888888765553  3367778899999


Q ss_pred             ccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHhCCCCCCCCCCcchhhHHHHHH-HHhhhcCCCcchhhHhHHH
Q 009772          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSL-CIVLSQLPNLNSIAGLSLI  258 (526)
Q Consensus       180 ~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v-~~~L~~l~~l~~l~~~S~~  258 (526)
                      |++|........+.. .....++....++.+..+++...        .....+.+...++ .+.+...+..+..+++..+
T Consensus        83 ~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~  153 (445)
T 3l1l_A           83 PFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLSYFFPILK--------DPWVLTITCVVVLWIFVLLNIVGPKMITRVQAV  153 (445)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTTCGGGG--------SHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCcccc--------ccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            988887765544433 33344455555555443322110        0011111111111 1112234556666666555


Q ss_pred             HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccch
Q 009772          259 GAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWR  338 (526)
Q Consensus       259 ~~~~~~~~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~gii~faf~~h~~i~~I~~~m~~~~k~p~~~~m~~  338 (526)
                      .....+...+++++..+....+++.. +++. .....++.++..++....|+|.|...+..+.+|+    |+|+| +..|
T Consensus       154 ~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~  226 (445)
T 3l1l_A          154 ATVLALIPIVGIAVFGWFWFRGETYM-AAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPI  226 (445)
T ss_dssp             HHHHHHHHHHHHHHTTSTTCCCCCCC-CC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhChhhcc-cccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccH
Confidence            44433332222222222222211111 1011 1111235678889999999999999999999999    88854 4459


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCCCCCC---hhHhHhhhhccCCCCchHHHHHHHHHHHHHHHhhhhccchhHHHHHH
Q 009772          339 GAKVAYLFIAMCLFPVAIGGFWAYGNLMPS---GGMLRALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFE  415 (526)
Q Consensus       339 v~~~a~~i~~~~Y~~~gi~Gy~~fG~~~~~---g~il~~l~~~~~~~~~~~~~~~~~~~~~i~~l~sypl~~~p~~~~le  415 (526)
                      ++..+..++.++|....+......+.+...   ....+.+.+..    .++...+..+...+..+.+.-...+..-+.+.
T Consensus       227 a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~  302 (445)
T 3l1l_A          227 ATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAK  302 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH----CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988877776643211   12222221111    12333344555555555554433333322222


Q ss_pred             hh-----hcc---ccccccccchhhhhHHHHHHHHHHHHHh--cc----chHHHHHHhhhhhhchhhhHhhHHHHHhhCC
Q 009772          416 AS-----YTS---RTNRPCSIWVRSGFRVFYGFVSFFIGVA--LP----FLSSLAGLLGGLTLPVTFAYPCFMWVLIKKP  481 (526)
Q Consensus       416 ~~-----~~~---~~~~~~~~~~r~~~r~~~~~~~~~iA~~--vP----~~~~vi~lvGa~~~~l~filP~l~~lk~~~~  481 (526)
                      ..     +++   +.++ +....+.+.-.  .+++.++++.  .|    .++.+.++.+ ++..+.|+++++.+++.+++
T Consensus       303 ~~a~dg~lP~~~~~~~~-~~~P~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~y~~~~~~~~~~r~~  378 (445)
T 3l1l_A          303 AAADDGLFPPIFARVNK-AGTPVAGLIIV--GILMTIFQLSSISPNATKEFGLVSSVSV-IFTLVPYLYTCAALLLLGHG  378 (445)
T ss_dssp             HHHHTTSSCGGGGCCCT-TCCCHHHHHHH--HHHHHHHHHSTTSHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHhCCCCcHHHHhcCC-CCCCHHHHHHH--HHHHHHHHHHHHcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence            21     111   1111 11111111111  1222222222  23    2455555443 22378999999999998775


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHH
Q 009772          482 TKYSFNWYFNWILGWLGVAFSLAF  505 (526)
Q Consensus       482 ~~~~~~~~~~~~l~~~g~~~~v~g  505 (526)
                      +. +.++...+.+.++|.+.+++.
T Consensus       379 ~~-~~r~~~~~~~~~~~~~~~~~~  401 (445)
T 3l1l_A          379 HF-GKARPAYLAVTTIAFLYCIWA  401 (445)
T ss_dssp             SS-GGGCTTTHHHHHHHHHHHHHH
T ss_pred             Cc-ccccchhHHHHHHHHHHHHHH
Confidence            54 222222334444444444333
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query526
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 93.96
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.96  E-value=3.3  Score=40.85  Aligned_cols=111  Identities=12%  Similarity=0.119  Sum_probs=65.4

Q ss_pred             CChhHHHHHHHhhhhhhhhch-hHHHH-HHhchHHH---HHHHHHHHHHHHHHHHHHHHchhhcCCccccCHHHHHHHHh
Q 009772          104 GNAHYAAFHNLNAGVGFQALL-LPVAF-AFLGWSWG---ILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF  178 (526)
Q Consensus       104 ~s~~~a~~~l~~~~iG~GiL~-LP~af-~~~G~~~g---iill~~~~~~~~~t~~lL~~~~~~~~g~r~~sY~~l~~~~~  178 (526)
                      ++..+-++..+...+|.|=+= .||-. +++|...=   +++++++++=..+-=..+.|..+ . | ....+..+.....
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~-~-g-~i~~~~~i~~~~~   81 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGG-A-Q-GHGTTPAIFYLLW   81 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-T-T-TCCSHHHHHHHHS
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCC-C-C-cccHHHHHHHHhc
Confidence            566788888999999998654 89986 55554322   22222222222222223333322 1 1 1457888888877


Q ss_pred             cccchhHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHh
Q 009772          179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVC  218 (526)
Q Consensus       179 G~~~g~~~~~~~i~~~~~g~~v~yii~~~~~l~~~~~~~~  218 (526)
                      +.+..+.+.....+. ++..++-|.++.+-.+..++..+.
T Consensus        82 ~~~~~~giG~~~~~~-~~~i~~yy~vi~~w~l~Y~~~s~~  120 (509)
T d2a65a1          82 RNRFAKILGVFGLWI-PLVVAIYYVYIESWTLGFAIKFLV  120 (509)
T ss_dssp             CSHHHHHHHTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            665556555544443 366777888888887776665544