Citrus Sinensis ID: 009796

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
Protein Sequence
MDETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINTESFDPLQESSEVNYADVPSRG
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccEEEEccEEEcccccccccccccEEEEEEEEEEHHHHHHHHHccccccEEEEEEEccccEEEEEccccccEEEEEEEEEccEEEEEEcccEEEEEEEccccccEEEccccccccEEEEcccccccccccccccccccccEEEEEEEccEEEEEEccccccEEEEccccccccccccccccEEEEEcccccccccccccccccEEccccccccHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEHHccccccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccEEEcccEEEEEEEEEEccccccccccHHHcEEEEEEEEccHHHHHHHHHcccHHHEEEEEEcccccEEEEEEccccEEEEEEEccccccEEEEEcccEEEEEEEccccccEEEccccHHcEEEEEEccccccHHHHHHHccccccEEEEEEcccccccccEccccEEEEEEccHHHHHHHHHcccccEEEEEEcccccccccccccccHHHccccccHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEccccccccccccccccEEEEEccccccEEEEccHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHcccccHcccccccccEEEcccccccccHHHHHHcEEEEcccccccc
Coil and Loop (DISEMBL)
mdetvdadhisdlpTFIIHHIMsflspkdvvrTGILSTTWRkfqtsfpvldfdqnnflvksrVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCelgfpmqklRISVSLlevkesspLFDKWVELAMENGVKELDFEVitdknsvnalpQTIFSAKLLTSLKlfgckleqpshcanlqslkklsldevyVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSfsrvprlldvaecpHLRKLVLflphfndqefhpliskfplledlsiiSLETLERIMISSNRLMHLEVYNcsglnrinvdapnlvsfdfednpipivstnapcplnvlfsnfgdidthWYLNLMEFIGAFNQIGELHLSLNYKQVLFnidefrschpslplqVESLSLFMESFSLYMDVVPSEYEILLDDLFwifypknlclspenwryrpFVMWFYDHLQNistnccngcqikcwrhylkgintesfdplqessevnyadvpsrg
Flexible Loop (DISEMBL)
MDETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKfqtsfpvldfdqnnflvksRVKRVlpfnledmmsrKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINtesfdplqessevnyadvpsrg
Low Complexity Region (SEG)
MDETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVeslslfmesfslYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINTESFDPLQESSEVNYADVPSRG
Disordered region (IsUnstruct)
********HISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINT*********************
Disordered Region (DISOPRED)
****VDA*HISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINTESFDPLQESSEVNYADV****
Disordered Region (DISEMBL)
MDETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINTESFDPLQESSEVNYADVPSRG
Disordered Region (DISPRO)
******ADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFL**********FNLE****RKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINTESFDPLQESSEVNYADV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINTESFDPLQESSEVNYADVPSRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	525	2.2.26 [Sep-21-2011]
Q9FZ70	416	F-box/FBD/LRR-repeat prot	yes	no	0.346	0.437	0.306	4e-15
Q9FLA2	438	Putative F-box/FBD/LRR-re	no	no	0.44	0.527	0.271	2e-13
Q9FNI8	466	FBD-associated F-box prot	no	no	0.396	0.446	0.276	1e-12
Q9FJ30	540	Putative F-box/LRR-repeat	no	no	0.365	0.355	0.276	1e-12
Q9FM89	422	F-box/FBD/LRR-repeat prot	no	no	0.426	0.530	0.285	4e-11
Q9M190	532	Putative F-box/LRR-repeat	no	no	0.356	0.351	0.296	6e-11
Q9LZ15	456	Putative F-box/LRR-repeat	no	no	0.434	0.5	0.243	9e-11
Q9FLA1	436	Putative F-box/FBD/LRR-re	no	no	0.44	0.529	0.276	1e-10
Q9C8Y7	456	Putative F-box/FBD/LRR-re	no	no	0.419	0.482	0.283	2e-10
Q9LJF8	306	F-box/LRR-repeat protein	no	no	0.392	0.673	0.292	2e-10

>sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 30/212 (14%)

Query: 8   DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVL 67
           D ISDLP  II +I++ LS +D +RT +LS+ WR   ++   L FD+         K V 
Sbjct: 6   DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDE---------KCVS 56

Query: 68  PFNLEDMMSRKNFCKSLRKFIRFVDAS--LHRFCELGFPMQKLRISVSLLEVKESSPLFD 125
           P N        + C      +RF+     LH+      P+ K ++S S    K+  P  D
Sbjct: 57  PSN--------DRCVVETNLVRFITGVLLLHQ-----GPIHKFQLSTSF---KQCRPDID 100

Query: 126 KWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSL 185
           +W+     NG+KEL   V+        +P  +F+   LT L+L  C+ + P +      L
Sbjct: 101 QWLLFLSRNGIKEL---VLKLGEGEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYL 157

Query: 186 KKLSLDEVYVNDQMVQSLVRECRVLEDLSFFY 217
           K L+L ++ V  ++++SL+  C +LE LS  Y
Sbjct: 158 KSLNLHQILVAPEVIESLISGCPLLEFLSLSY 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLA2|FDL34_ARATH Putative F-box/FBD/LRR-repeat protein At5g44950 OS=Arabidopsis thaliana GN=At5g44950 PE=4 SV=1

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 123/269 (45%), Gaps = 38/269 (14%)

Query: 8   DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVL 67
           D IS+LP  +++HI+ +L  ++ +RT +LS+ WRK     P LD                
Sbjct: 4   DRISELPDGLLNHILMYLHIEESIRTSVLSSRWRKLWLKVPGLD---------------- 47

Query: 68  PFNLEDMMSRKNFCKSLR-KFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDK 126
             N+ D  +  N  +SL  KF+      L  F        KL    +L  + +    F  
Sbjct: 48  -VNVHDFPADGNLFESLMDKFLEVNRGRLQNF--------KLNYESNLYYLMDR---FVP 95

Query: 127 WVELAMENGVKELDFEVITD--KNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQS 184
           W+   ++ G++ LD    TD    +++ +P  I  +K L SLKL    L+ P    +L  
Sbjct: 96  WIATVVDRGIQHLDVTA-TDCPPWTIDFMPANICKSKTLVSLKLVNVGLDTPKFVVSLPC 154

Query: 185 LKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLILRFTYQ 242
           LK + L++++ +  + ++L+  C VLEDL+        L  LR+  +  LK+  L F + 
Sbjct: 155 LKIMHLEDIFYSPLIAENLISGCPVLEDLTIVRNHEDFLNFLRVM-SQTLKNFRLTFDWG 213

Query: 243 ELE---SVEIAVPSLQQLELSFSRVPRLL 268
                 SVEI  P L+ +    S+  R++
Sbjct: 214 MGSNDFSVEIDAPGLKYMSFRDSQSDRIV 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNI8|FBD32_ARATH FBD-associated F-box protein At5g22730 OS=Arabidopsis thaliana GN=At5g22730 PE=2 SV=2

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 31/239 (12%)

Query: 8   DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVL 67
           D IS LP  +I  I+ +L  KD+VRT  LS+ W+      P LD D              
Sbjct: 28  DLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLDS------------- 74

Query: 68  PFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKW 127
               E+      F   + KFI F  +   + C     + KL++S    +     P   +W
Sbjct: 75  ----EEFQDYNAFVGFMNKFIDF--SGEEKIC-----LDKLKLSSR--KTVNDLPCVTRW 121

Query: 128 VELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKK 187
           ++  +   +K LD E + ++  +  +P +++    L +L+L    L +     +L  LK 
Sbjct: 122 IDFVVRRKLKHLDVECLVNRKFLEEMPLSLYVCDTLVNLRLHRVLLGK-FEAVSLPCLKT 180

Query: 188 LSLDE-VYVNDQMVQSLVRECRVLEDLSFFYCF--GLKRLRISEAHKLKSLILRFTYQE 243
           + L+E VY ND +++SL+  C VL+DL     F   +K LR+  +  L SL + F + E
Sbjct: 181 MRLEENVYANDVVLESLISSCPVLKDLIILRMFEDNVKVLRV-HSLTLTSLNIDFNFGE 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ30|FBL88_ARATH Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana GN=At5g41840 PE=4 SV=1

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 25/217 (11%)

Query: 5   VDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVK 64
           V  D IS LP  +I HI+SFL  K+   T +L+  W+      P L+FD + +       
Sbjct: 11  VSGDRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIY------- 63

Query: 65  RVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLF 124
                       R  + KS   F+ FVD+ L    +   P++  R  V   +V + S + 
Sbjct: 64  ------FHPRARRNKYSKSYESFMSFVDSVLALQAKTKTPLK--RFHVKCEDVVDQSWVL 115

Query: 125 DKWVELAMENGVKELDFEVITDKN-----SVNALPQTIFSAKLLTSLKLF---GCKLEQP 176
           + W+   ++ GV ++D  + + +N     S  +LP  IF +K L  LK+    G  ++  
Sbjct: 116 E-WIPKVLKRGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVE 174

Query: 177 SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213
               +L  LK L LD   +   M+  L+  C  LE+L
Sbjct: 175 GG-VSLPKLKTLHLDYFKIETSMLNKLLSGCHALEEL 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana GN=At5g56420 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 117/259 (45%), Gaps = 35/259 (13%)

Query: 8   DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVL 67
           D +S LP   +  I+S+L  KDV+ T +LS  WR   T  P L++D              
Sbjct: 6   DRLSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFLWTLVPRLNYD-------------- 51

Query: 68  PFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKW 127
              L D     N C    +F +FVD SL         ++ L I +  +       +   W
Sbjct: 52  -LRLHD-----NTCP---RFSQFVDRSL--LLHKAPTLESLNIKIGSICFTAEKDV-GVW 99

Query: 128 VELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKK 187
           V + ++  V+EL     + +  +  LP+ +F+   L  LKL    LE  S     QSLK 
Sbjct: 100 VRIGVDRFVRELSVSYCSGEEPIR-LPKCLFTCSTLAVLKLENITLEDASCYVCFQSLKT 158

Query: 188 LSLDEV-YVNDQMVQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLILRFTYQEL 244
           L L +V Y++DQ +  ++  C  LEDL    C G  +K + ++ A  LK+L L  + Q  
Sbjct: 159 LHLLDVKYLDDQSLPRIISSCSSLEDLVVQRCPGDNVKVVTVT-APSLKTLSLHKSSQAF 217

Query: 245 ESVE----IAVPSLQQLEL 259
           E  +    I  P L+++++
Sbjct: 218 EGDDDGFLIDTPKLKRVDI 236

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M190|FBL49_ARATH Putative F-box/LRR-repeat protein At3g42770 OS=Arabidopsis thaliana GN=At3g42770 PE=4 SV=1

 Score = 69.3 bits (168), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 19/206 (9%)

Query: 13  LPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLE 72
           LP  ++  I+SFL  K+   T +LS  WR   T  P LDFD N+ L++S+ ++   +N+ 
Sbjct: 4   LPDELLVQILSFLPTKEATSTSLLSKRWRTLFTLSPNLDFD-NSLLLQSKKRK---WNMR 59

Query: 73  DMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAM 132
           ++          + F+ FVD++L      G     L+   +L +V     + ++W+  A+
Sbjct: 60  NIQ---------KSFVGFVDSTLALQGGKGIKSFSLKFKETLGDVNGEVDV-NRWICNAL 109

Query: 133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLF--GCKLEQPSHCANLQSLKKLSL 190
           E+GV EL   +  D      LP  IF++  L  L L    C    P +C +L SLK L L
Sbjct: 110 EHGVSELHLRI--DYTKRCHLPSEIFTSTKLVKLSLVTQSCFPVVP-NCISLPSLKVLFL 166

Query: 191 DEVYVNDQMVQSLVRECRVLEDLSFF 216
           D ++         +  C  LEDL+ +
Sbjct: 167 DSIWFEVPQFLIFLTACPALEDLTIY 192

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 68.9 bits (167), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 111/271 (40%), Gaps = 43/271 (15%)

Query: 7   ADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRV 66
           AD I+ +P  I+HHI+SF+     +RT +LS  WR      P LD               
Sbjct: 26  ADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDI-------------- 71

Query: 67  LPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDK 126
                   +      ++L  +   +  S     +L                  + P  D 
Sbjct: 72  -------TLKHGAMNQTLTSYTAPIITSFKLVMDLN---------------SNTVPQVDS 109

Query: 127 WVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLE----QPSHCANL 182
           W+E A+   V+ L   V     S       IF   L +SLKL    L+     P+   + 
Sbjct: 110 WIEFALSRNVQNLSVFVRDFTYSKTYRFPDIF--YLSSSLKLLDVTLDFFDMIPTCTVSW 167

Query: 183 QSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQ 242
           +SL+ L+L    + D+ + +++  C +LE L+   C  L+RL +S++  L+ L +   Y+
Sbjct: 168 KSLRNLTLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLDINQQYR 227

Query: 243 ELESVEIAVPSLQQLELSFSRVPR-LLDVAE 272
               V I  P +  L L++S  P  ++DV+ 
Sbjct: 228 RTGPVAIVAPHIYYLRLTYSSTPSTIVDVSS 258

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLA1|FDL35_ARATH Putative F-box/FBD/LRR-repeat protein At5g44960 OS=Arabidopsis thaliana GN=At5g44960 PE=4 SV=2

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 125/275 (45%), Gaps = 44/275 (16%)

Query: 6   DADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKR 65
           + D+I++LP  ++  I+  L  KD V+T + S  WR    + P LD     F        
Sbjct: 3   ECDYINELPDSLLTQILLDLRTKDSVKTSVSSKRWRNLWLNVPGLDLFSLQF-------- 54

Query: 66  VLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFD 125
             P + E +             I+F+D  +   C       + R+   ++   E +   D
Sbjct: 55  TNPHHEEGL-------------IKFMDRFMESNC-------RSRLQKFMIRYFECNGYRD 94

Query: 126 KWVEL---AMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANL 182
           +++EL    ++ G++ L +  +   N V+ + Q I+ +K L SLKL+  +L+ P    +L
Sbjct: 95  RFMELIGTVVDCGIQHL-YVYMHTCNRVDFIRQNIYKSKTLVSLKLYNVELKNPDFVVSL 153

Query: 183 QSLKKLSLDEV-YVNDQ--MVQSLVRECRVLEDLSFFYCFGLKR------LRISEAHKLK 233
             LK L L ++ Y  D   +V+ L+  C VLEDL     F +        LR+S +  LK
Sbjct: 154 PCLKILKLMKICYGEDGPLVVEKLISGCPVLEDLELIKPFDILTQDVILFLRVS-SQTLK 212

Query: 234 SLILRFTYQELESVEIAVPSLQQLELSFSRVPRLL 268
           SL L F      SVEI  P L+ +    SR  R++
Sbjct: 213 SLRLYFATN--GSVEIDAPRLKYMTFYESRFDRIM 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8Y7|FDL8_ARATH Putative F-box/FBD/LRR-repeat protein At1g66300 OS=Arabidopsis thaliana GN=At1g66300 PE=4 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 109/268 (40%), Gaps = 48/268 (17%)

Query: 6   DADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKR 65
           + D + DLP  +I H++  LS KDV++  +LST WR      P LD D ++F        
Sbjct: 27  EVDWVRDLPESLICHVLLNLSTKDVIKNCVLSTKWRYLWRYVPGLDLDCSDF-------- 78

Query: 66  VLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESS-PLF 124
                                F+ FVD  L    E      KL     L+  +E+     
Sbjct: 79  ----------------TEYNTFVSFVDRFLSTNTESYLNKFKLGFDCDLVGDEETGNAQM 122

Query: 125 DKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQS 184
            +W+   ++  V+ LD E          +P  ++  K L SLKL G  L  P     L S
Sbjct: 123 ARWINDVVKRKVQHLDLEW-----GALEIPPIVYVCKSLVSLKLCGVILPIPEFVC-LPS 176

Query: 185 LKKLSLDEV-YVNDQMVQSLVRECRVLEDLSFFYCF--GLKRLRISEAHKLKSLILRFTY 241
           +K + LD V + ND  ++ L+  C VL+ L+        +K LR+         +L F Y
Sbjct: 177 VKVIVLDWVKFANDLALEMLISGCLVLKSLTLCRSNNDNVKVLRVRSQS-----LLSFNY 231

Query: 242 Q-------ELES--VEIAVPSLQQLELS 260
                   E E   VEI  P LQ L LS
Sbjct: 232 NGPNTMGPEYEELIVEIDTPKLQDLTLS 259

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJF8|FBL47_ARATH F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana GN=At3g26922 PE=2 SV=2

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 104/256 (40%), Gaps = 50/256 (19%)

Query: 5   VDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVK 64
           V+ D ISDLP  ++  I+S L  KDVV T +LS  WR      P L FD  N        
Sbjct: 11  VNEDRISDLPEALLLQILSMLPVKDVVTTSVLSKPWRSLWKLVPTLKFDYEN-------- 62

Query: 65  RVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLF 124
                  ED    +  C+ L         SLH    LGF   + R           S   
Sbjct: 63  ----NQSEDETYSEIVCRLLLSNKAPFLESLH----LGFRFGECR-----------SVEV 103

Query: 125 DKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQS 184
             W+ +A    V++L   V + K S    P  +++ + L SL L    L      A L+S
Sbjct: 104 GMWIGIAYARHVRDLVLHVESVKGSF-IFPTGLYNCETLESLTLRSWVLVDVPSPACLKS 162

Query: 185 LKKLSLDEV-YVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQE 243
           L+ L L+ V Y  D  V +L+  C  LE+L                     ++ R    E
Sbjct: 163 LRTLRLENVDYKYDDSVYNLLSGCPNLENL---------------------VVYRGNLLE 201

Query: 244 LESVEIAVPSLQQLEL 259
           +E+  IAVPSLQ+L +
Sbjct: 202 VETFTIAVPSLQRLTI 217

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
224121624	528	predicted protein [Populus trichocarpa]	0.914	0.909	0.342	4e-70
224119688	563	f-box family protein [Populus trichocarp	0.933	0.870	0.317	7e-44
147833276	521	hypothetical protein VITISV_011919 [Viti	0.889	0.896	0.312	3e-43
225442254	520	PREDICTED: putative F-box protein At3g44	0.885	0.894	0.301	2e-40
297743071	552	unnamed protein product [Vitis vinifera]	0.885	0.842	0.301	2e-40
356557323	833	PREDICTED: uncharacterized protein LOC10	0.900	0.567	0.283	1e-36
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.750	0.840	0.290	1e-34
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.750	0.840	0.288	4e-34
357454743	761	Agglutinin alpha chain [Medicago truncat	0.923	0.637	0.256	1e-31
449458245	575	PREDICTED: uncharacterized protein LOC10	0.864	0.789	0.290	8e-31

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 176/514 (34%), Positives = 281/514 (54%), Gaps = 34/514 (6%)

Query: 8   DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVL 67
           DHIS  P  ++HHI+SFL  KDV+RT ILS  W+    ++P+LDF   +   +S      
Sbjct: 2   DHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQS------ 55

Query: 68  PFNLEDMMSRKN----FCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPL 123
                D M  +N    + + L KF+ +VD S+ RFC+  F MQK ++ + L +++ SS L
Sbjct: 56  ----SDAMYSENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFLVLPDLELSSHL 111

Query: 124 FDKWVELAMENGVKELDFEVITDK----NSVNALPQTIFSAKLLTSLKLFGCKLE-QPSH 178
            DKWV+  +ENG KE+DF +            ++P  IF+AK +T LKLFGC ++ + S 
Sbjct: 112 -DKWVQKVIENGAKEVDFGIDLPGYLHFKKPYSMPDAIFAAKSVTVLKLFGCNVKLEESF 170

Query: 179 CANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR 238
           C  L SL+KL+L EV ++D +++ +V  C +LED+S  +C+GLK++++ E  +LK   + 
Sbjct: 171 CIKLHSLQKLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFEIY 230

Query: 239 FTYQELESVEIAVPSLQQLELSFS--RVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLIS 296
               + ESVEI  PSL+    SF+   V  ++ V  C  L+ L+L      +     L+ 
Sbjct: 231 SHLSKPESVEIKSPSLESFHCSFTVRSVKPIVSVDACQGLKSLILSGSFVTELLLQDLVP 290

Query: 297 KFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIV 356
           KF +LE L +     L+++ ISS RL  LE+++C  +  I ++ PNL+S  +  + +P+ 
Sbjct: 291 KFHVLESLRVGDCPVLKKVKISSWRLKSLEIHSCENIMDIEINTPNLLSCKYCGSVVPVS 350

Query: 357 STNAP-CPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCH 415
             NAP C   V FS    +D  WY+ L EF+   NQ+  LH+ +    ++ +++     +
Sbjct: 351 LINAPSCHWQVEFSLMNTLDILWYMTLKEFLAKLNQLVYLHVYVYLTTIMSSLNLEDLSN 410

Query: 416 PSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCL--SPENWRYRPFVM 473
            + P  V+++ L + S S  M      Y   +D LF+   PKNL +  + E  RY  ++ 
Sbjct: 411 NASPYVVDNVVLTVHSASPIM-----TYANFMDGLFFFSRPKNLFIRSTDEQKRYVEYLC 465

Query: 474 WFYDHLQNISTNCCNGCQIKCWRHYLKGINTESF 507
            F       + +CCN  ++KCWRH LK +   SF
Sbjct: 466 GFSKR----ALSCCNHRKVKCWRHDLKEVKLGSF 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119688|ref|XP_002318135.1| f-box family protein [Populus trichocarpa] gi|222858808|gb|EEE96355.1| f-box family protein [Populus trichocarpa]

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 170/536 (31%), Positives = 265/536 (49%), Gaps = 46/536 (8%)

Query: 1   MDETVDA-DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLV 59
           M   VDA D IS LP  ++H+I+S+LS + VVR  +LS TW +  TSFPV DF ++  L+
Sbjct: 27  MGIRVDASDRISRLPDHVLHYILSYLSIRAVVRFSVLSKTWHRISTSFPVSDFSEDVLLL 86

Query: 60  KSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVK- 118
             R      + ++D    KN      KFI FV  SL           K R+S+ L     
Sbjct: 87  GKR------YEIQDW---KN------KFIDFVQDSLLAQHHHNTRSHKFRLSMDLDSYDP 131

Query: 119 ESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFG-CKLEQPS 177
           + +   D  +ELA + GV E D        S   LP+ + SA+ +T L+L G  KL  P 
Sbjct: 132 QLTSRADHLLELATKCGVYEFDLNF--QNISHYCLPRALLSAEEITVLRLNGNYKLSLPR 189

Query: 178 HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL 237
              N  SL+ LSL  V V++ ++Q+L+  C ++E L+  YC+G+K +RIS   KLK + +
Sbjct: 190 DAINWPSLRVLSLMNVRVDEAILQNLICGCPLIEKLALVYCYGVKSIRISGCIKLKEVEV 249

Query: 238 RFTYQELESVEIAVPSLQQLELSFSRVPRL--LDVAECPHLRKLVLFLPHFND---QEFH 292
                 LE +EI VPSL+    +   V     +D+  C +L  L L   +  +   Q F 
Sbjct: 250 NEGDSVLERMEIHVPSLRTFCYTTGLVKSFFHIDMTGCRNLELLKLKFYNITEVIGQVFQ 309

Query: 293 PLISKFPLLEDLSIISLET-LERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDN 351
            LI++FP L+ L++    T + RI IS+ +L  L++++ S L ++ + +P+L SF     
Sbjct: 310 DLIAQFPALKVLALNCYATSVSRIKISNPQLEKLQLWS-SALTKVTITSPSLHSFKHFTY 368

Query: 352 PIPIVSTNAPCPLN--VLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNID 409
             P   +     L    L  + G + +  +L L E++G FNQI  L L +NY  + F  +
Sbjct: 369 GFPSAFSLDQSSLQKATLHVHKGALYSSDFLQLREYLGNFNQIRRLTLRINYVGIRFIPE 428

Query: 410 EFRSCH-PSLPLQVESLSLFMESFSLYMDVVPS--EYEILLDDLFWIFYPKNLCL----S 462
              +   P+LP  ++ L L +   +     + +  +Y  ++D L W+ +P+ + L    S
Sbjct: 429 TLNNISIPALP-DIKHLKLKICPSTGASGSLANLKDYRDIVDGLLWVCHPETILLISGWS 487

Query: 463 PENWRYRPFVMWFYDHLQNIS--TNCCNGCQIKCWRHYLKGINTESFDPLQESSEV 516
            EN     F+    + L       +CC    IKCWRH LK I  E    LQ ++E 
Sbjct: 488 SENL----FIQILCEKLMQGGEKQHCCTSSHIKCWRHDLKDIQIEH---LQRNAEA 536

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 161/516 (31%), Positives = 240/516 (46%), Gaps = 49/516 (9%)

Query: 6   DADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLD--FDQNNFLVKSRV 63
           + D IS LP  I+  I+  L  KDV R+ +LS  WRK      +    F   +FL   R 
Sbjct: 4   EQDRISHLPDDILIRILGLLPTKDVARSSLLSQAWRKLSPFSSLSLLMFQCPDFLESCR- 62

Query: 64  KRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPL 123
                         KN    +  FI  +D+SL R       + +LR+ + L ++ ES  L
Sbjct: 63  --------------KN--TDVSSFINAIDSSL-RLRPKDVNLARLRLHLDLDDI-ESESL 104

Query: 124 FDKWVELAMENGVKELDFEVITDK-NSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANL 182
            D W++ A+E  VKELD  +          LP  IFS   +T L L  C+LE      +L
Sbjct: 105 IDSWIDAALERKVKELDLYLRPRSIAKPYGLPAKIFSTTTITVLSLEQCRLEICGD-IDL 163

Query: 183 QSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQ 242
            +L+KL L ++  ++Q ++ L+  C ++EDL    C GL++L +S    L  L +   Y 
Sbjct: 164 PALRKLCLRQIRCDEQAIRQLISSCPLIEDLDIASCGGLQKLHVSGLANLHRLEVICCYN 223

Query: 243 ELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE 302
            L  +EI  PSLQ L     R+P  + +  C  LR+L+L  PH  +     L S FP LE
Sbjct: 224 -LRRIEIDAPSLQHLVYHCGRLPCDMVLTPCEFLRELILHDPHITNDFLQNLDSGFPNLE 282

Query: 303 DLSIISLETLERIMISSNRLMHLE--VYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNA 360
            L I S   L+RI IS ++L  LE  +       ++ +DAPNL SF +    +P+ ST +
Sbjct: 283 RLEIDSTR-LQRIEISHHQLKRLELKLTPLQKEAKLKIDAPNLQSFTYSGYRMPLTSTIS 341

Query: 361 PCPLNVL------FSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSC 414
               + L      F N+ D    +   L EF         ++L +  K+ L    + R  
Sbjct: 342 SMNTSSLREAEIHFRNYNDYSHFFIPQLKEFFEKSKNCQVINLLIKSKEELIIPRKLR-- 399

Query: 415 HPSLPLQVESLSLFMESFSLYMDV-VPSEYEILLDDLFWIFYPKNLC-LSPENWRYRPFV 472
            P L   V  +        LY+ V   S ++ ++D + W+ +P+ L  LS  N R   F+
Sbjct: 400 -PILSPPVYDIK------HLYLRVSYCSRFQYIIDRMLWMCHPQTLSILSGTNVR---FL 449

Query: 473 MWFYDHLQNISTN--CCNGCQIKCWRHYLKGINTES 506
              Y+  +N   N  CC  C IKCWRHYLK +  +S
Sbjct: 450 KVLYNKFRNKEENPKCCTSCSIKCWRHYLKDVQIDS 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 156/517 (30%), Positives = 240/517 (46%), Gaps = 52/517 (10%)

Query: 6   DADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQ--TSFPVLDFDQNNFLVKSRV 63
           + D IS LP  I+  I+S L  K++ RT +LS  WRK    +S  VL F   +F   SR 
Sbjct: 4   EQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFF-HSR- 61

Query: 64  KRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPL 123
                        RKNF   +  FI  +D+SL R  +    + +L++ + L ++ ES  L
Sbjct: 62  -------------RKNF--DVSSFINAIDSSL-RLRQKDVSLARLQLRLHLNDI-ESESL 104

Query: 124 FDKWVELAMENGVKELDFEVITDK-NSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANL 182
            D W++ A+E  VKELD  ++         LP  IFS   +T L L  C+LE      +L
Sbjct: 105 IDSWIDAALERKVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEICGD-VDL 163

Query: 183 QSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQ 242
            +L+KL L ++  ++Q ++ L+  C ++EDL    C  LK+L +S    L  L++   Y 
Sbjct: 164 PALRKLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYN 223

Query: 243 ELESVEIAVPSLQQLELSFSRVPRLLDVAECPH--LRKLVLFLPHFNDQEFHPLISKFPL 300
            L  +EI  PSLQ       R   L DV   P   LR+L+L   H  +     L+S  P 
Sbjct: 224 -LRRIEIDAPSLQYFMYDHQR-SLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPN 281

Query: 301 LEDLSIISLETLERIMISSNRLMHLEVY--NCSGLNRINVDAPNLVSFDFEDNPIPIVS- 357
           LE L I S   L+RI IS ++L  LE+         ++ +DAPNL SF +    +P+ S 
Sbjct: 282 LERLEIDSTR-LQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSM 340

Query: 358 -----TNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFR 412
                T++     + F N  D    + L L EF         ++L +  K+ L    + R
Sbjct: 341 ISSMNTSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNCQVINLLIKSKEELIIPRKLR 400

Query: 413 SCHPSLPL-QVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPF 471
              PS P+  ++ L L +           S ++ ++D + W+ +P+ L +         F
Sbjct: 401 PI-PSPPVYDIKHLHLIV--------YYCSRFQYIIDRMLWMCHPQTLSIETSA----KF 447

Query: 472 VMWFYDHLQNISTN--CCNGCQIKCWRHYLKGINTES 506
           +   Y+   N   N  CC  C  KCWRHYL+ +  + 
Sbjct: 448 LKVLYNKFSNKEENPKCCTSCPTKCWRHYLEDVQIDG 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera]

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 156/517 (30%), Positives = 240/517 (46%), Gaps = 52/517 (10%)

Query: 6   DADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQ--TSFPVLDFDQNNFLVKSRV 63
           + D IS LP  I+  I+S L  K++ RT +LS  WRK    +S  VL F   +F   SR 
Sbjct: 36  EQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFF-HSR- 93

Query: 64  KRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPL 123
                        RKNF   +  FI  +D+SL R  +    + +L++ + L ++ ES  L
Sbjct: 94  -------------RKNF--DVSSFINAIDSSL-RLRQKDVSLARLQLRLHLNDI-ESESL 136

Query: 124 FDKWVELAMENGVKELDFEVITDK-NSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANL 182
            D W++ A+E  VKELD  ++         LP  IFS   +T L L  C+LE      +L
Sbjct: 137 IDSWIDAALERKVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEICGD-VDL 195

Query: 183 QSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQ 242
            +L+KL L ++  ++Q ++ L+  C ++EDL    C  LK+L +S    L  L++   Y 
Sbjct: 196 PALRKLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYN 255

Query: 243 ELESVEIAVPSLQQLELSFSRVPRLLDVAECPH--LRKLVLFLPHFNDQEFHPLISKFPL 300
            L  +EI  PSLQ       R   L DV   P   LR+L+L   H  +     L+S  P 
Sbjct: 256 -LRRIEIDAPSLQYFMYDHQR-SLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPN 313

Query: 301 LEDLSIISLETLERIMISSNRLMHLEVY--NCSGLNRINVDAPNLVSFDFEDNPIPIVS- 357
           LE L I S   L+RI IS ++L  LE+         ++ +DAPNL SF +    +P+ S 
Sbjct: 314 LERLEIDSTR-LQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSM 372

Query: 358 -----TNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFR 412
                T++     + F N  D    + L L EF         ++L +  K+ L    + R
Sbjct: 373 ISSMNTSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNCQVINLLIKSKEELIIPRKLR 432

Query: 413 SCHPSLPL-QVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPF 471
              PS P+  ++ L L +           S ++ ++D + W+ +P+ L +         F
Sbjct: 433 PI-PSPPVYDIKHLHLIV--------YYCSRFQYIIDRMLWMCHPQTLSIETSA----KF 479

Query: 472 VMWFYDHLQNISTN--CCNGCQIKCWRHYLKGINTES 506
           +   Y+   N   N  CC  C  KCWRHYL+ +  + 
Sbjct: 480 LKVLYNKFSNKEENPKCCTSCPTKCWRHYLEDVQIDG 516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 152/536 (28%), Positives = 243/536 (45%), Gaps = 63/536 (11%)

Query: 1   MDETVDA--DHISDLPTFIIHHIMSFL-SPKDVVRTGILSTTWRKFQTSFPVLDFDQNNF 57
           MD + D   D IS  P  +IHHI+S L +  D +RT +LS  WR+   S+ VL FD+  F
Sbjct: 151 MDTSDDGSVDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDERKF 210

Query: 58  LVKSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEV 117
             K           ED  ++         F  +V  SL         ++KL + ++  ++
Sbjct: 211 AAK--------IGHEDSSNKGMM------FRDYVSNSLLTSNAKNLQIRKLVLHMTSFDL 256

Query: 118 KESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPS 177
            E +P  + W+ +A+   +KELD  V         LPQT+FS+K LT ++L GCKL    
Sbjct: 257 LEDAPCLELWLNIAIYRNIKELDLHVGIKNGECYTLPQTVFSSKTLTGIRLSGCKL---G 313

Query: 178 HCANLQ--SLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL 235
            C N++   L+KL L ++ + +  +Q+L+  C  +EDL    C GLK L +S   +LK  
Sbjct: 314 TCNNIKLPYLQKLYLRKIPLVENFIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRA 373

Query: 236 ILRFTYQELESVEIAVPSLQQLELSFSRV-PRLLDVAECPHLRKLVLFLPHFNDQEFHPL 294
            +    Q L+ VEI+ P+L        +  P  + +  C  L++L L  P          
Sbjct: 374 EIHHCIQ-LKKVEISAPNLDTFWYCGKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCENQ 432

Query: 295 ISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRIN---VDAPNLVSFDFEDN 351
            S FPLLE L +       R +I SN   HLE +   G  ++    V+APNL+SF+ +  
Sbjct: 433 FSNFPLLEKLDLSMSNNKSRFIIISN--PHLEKFTLKGCKKLGIVLVEAPNLLSFECKGE 490

Query: 352 PIPIVSTNAPCPLNVLFSNF---------GDIDTHWYLNLMEFIGAFNQIGELHLSLNYK 402
            +P V  + P  L     +F         G  D  W + +  FI  FN+     +  + K
Sbjct: 491 TMPWVEIH-PFGLTQAKLSFVPKSEPRVVGYGDKIW-IRMKSFIQKFNRERFKLVLYSNK 548

Query: 403 QVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEI--LLDDLFWIFYPKNLC 460
            ++ + D      P +P              L  +++ S   I   L+ L    +P  L 
Sbjct: 549 SIVIHEDLNNVILPPVP-------------DLGCEIINSSACIDDALNSLLRKLHPVTLS 595

Query: 461 -LSPENWRYRPFVMWFYDHLQNISTN--CC--NGCQIKCWRHYLKGINTESFDPLQ 511
            +SP + ++   V   Y+ ++N   +  CC  +  + KCWRH LK +N E  + ++
Sbjct: 596 IISPTDSKFPKLV---YEMMKNKDKDPICCIYSTSKNKCWRHLLKDVNFEDLNDVK 648

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 123/423 (29%), Positives = 196/423 (46%), Gaps = 29/423 (6%)

Query: 8   DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRV--KR 65
           D IS+LP  I+ HI+SFLS K +++T ILS  W     +FP  +FD+N F ++S++  KR
Sbjct: 2   DLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNKR 61

Query: 66  VLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFD 125
               N  +   ++  C  LRKF    D          FP     + V            D
Sbjct: 62  FHLINFVEQTLKQLKC--LRKFKLHTD----------FPEPNSMVVV------------D 97

Query: 126 KWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSL 185
           +W++  +E+GV+EL+  V  +      LPQ +F+ + LT L +  CKL        L S+
Sbjct: 98  RWIDYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSM 157

Query: 186 KKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELE 245
           K +SL  V+  D+ V+ LV  C  ++ +    C GL+ L + E ++L ++ ++     L 
Sbjct: 158 KSVSLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQ-NNSGLY 216

Query: 246 SVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLS 305
                  +LQ  E      P  ++++ C +L+ L L +    D  F+   S+FPLLE L+
Sbjct: 217 EFGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILA 276

Query: 306 IISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLN 365
           +     LE + ISS+ L    +  C  + R+++DAP L   +F  + I   S NAP    
Sbjct: 277 LSYCHMLESLRISSSHLKKFILCGCESVTRVDIDAPCLSGLEFSGDVISF-SLNAPALSQ 335

Query: 366 VLFSNFGDI-DTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVES 424
                   I D  W +  +EF+  FN +  L L     + +    E R    S    V+ 
Sbjct: 336 ADIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQELRETFGSPLYGVKH 395

Query: 425 LSL 427
           L L
Sbjct: 396 LKL 398

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 195/423 (46%), Gaps = 29/423 (6%)

Query: 8   DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRV--KR 65
           D IS+LP  I+ HI+SFLS K +++T ILS  W     +FP  +FD+N F ++S++  KR
Sbjct: 2   DLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNKR 61

Query: 66  VLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFD 125
               N  +   ++  C  LRKF    D          FP     + V            D
Sbjct: 62  FHLINFVEQTLKQLKC--LRKFKLHTD----------FPEPNSMVVV------------D 97

Query: 126 KWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSL 185
           +W++  +E+GV+EL+  V  +      LPQ +F+ + LT L +  CKL        L S+
Sbjct: 98  RWIDYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSM 157

Query: 186 KKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELE 245
           K +SL  V+  D+ V+ LV  C  ++ +    C GL+ L + E ++L ++ ++     L 
Sbjct: 158 KSVSLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQ-NNSGLY 216

Query: 246 SVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLS 305
                  +LQ  E      P  ++++ C +L+ L L +    D  F+   S+FPLLE L+
Sbjct: 217 EFGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILA 276

Query: 306 IISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLN 365
           +     LE + ISS+ L    +  C  + R+++D P L   +F  + I   S NAP    
Sbjct: 277 LSYCHMLESLRISSSHLKKFILCGCESVTRVDIDTPCLSGLEFSGDVISF-SLNAPALSQ 335

Query: 366 VLFSNFGDI-DTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVES 424
                   I D  W +  +EF+  FN +  L L     + +    E R    S    V+ 
Sbjct: 336 ADIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQELRETFGSPLYGVKH 395

Query: 425 LSL 427
           L L
Sbjct: 396 LKL 398

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454743|ref|XP_003597652.1| Agglutinin alpha chain [Medicago truncatula] gi|355486700|gb|AES67903.1| Agglutinin alpha chain [Medicago truncatula]

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 241/531 (45%), Gaps = 46/531 (8%)

Query: 8   DHISDLPTFIIHHIMSFL-SPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRV 66
           D IS LP  +I+HI+SFL + +D +RT  LS  WR    S+  L F +  F         
Sbjct: 42  DRISQLPDHVIYHILSFLRNTRDAIRTKCLSKRWRTLWFSYAALIFYEQKFAAG------ 95

Query: 67  LPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDK 126
                ED  +++N       F + V  SLH +      +QKL + +   ++ ++ PL D 
Sbjct: 96  --IGPEDGSNKENL------FRQHVADSLHTYLANNLQIQKLLLHMMSFDLTDA-PLVDS 146

Query: 127 WVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCAN--LQS 184
           W+  A+   ++E+D ++     +   LP+ + S++ LT L+L GC L +   C N  L  
Sbjct: 147 WLTSAVSQDIQEIDLQIGFKDINRYTLPEVVLSSETLTGLRLSGCILRR---CGNIMLPR 203

Query: 185 LKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQEL 244
           L+KL L +V++ +Q+V +L+  C  +EDL F  C GLK L I     L  L +    Q L
Sbjct: 204 LQKLYLRKVHLGEQIVTNLISCCPSIEDLRFVQCSGLKFLYI-HCDSLSRLEIHNCNQ-L 261

Query: 245 ESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLED 303
           ++  I  P+L        +  P  +++ +C  L+KL L  P  +        +KFPLLE 
Sbjct: 262 KTAYIFAPNLDTFWFCGKKSTPCKVNLEDCASLKKLTLEHPRVSRDFCENQFNKFPLLEK 321

Query: 304 LSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVS------ 357
           L +   + ++ I I +  L  + +  C  L  + + AP LVSF+ +   +P         
Sbjct: 322 LDLCIADKMKSITIFNRCLQRIVLKGCKKLTYVQIYAPKLVSFELKGETMPYFDFVTPFL 381

Query: 358 -TNAPCPLNVLFS--NFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSC 414
            T+A   L+      + G  +  W++ +  FI  F  +    + ++  + +  I E  S 
Sbjct: 382 LTDAKISLSTATESRDVGLGNQLWFM-MRPFISLFFPVEGFKMIMHSSKHII-IHEDLSS 439

Query: 415 HPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMW 474
               PL   +  +   S  +         E +L  L    +P+++ +   +       ++
Sbjct: 440 IKCPPLHDLTFEIIKSSACV---------EDILYGLLRTLHPESVSIISSSGNKFHESVY 490

Query: 475 FYDHLQNISTNCC--NGCQIKCWRHYLKGINTESFDPLQESSEVNYADVPS 523
               +++    CC  N  + KCWRH+LK + +ES+  + +  E +   + +
Sbjct: 491 EMIKIKDDDPVCCIYNISKNKCWRHFLKDVKSESWQEMLDVVEASEGGIGT 541

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458245|ref|XP_004146858.1| PREDICTED: uncharacterized protein LOC101214024 [Cucumis sativus]

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 147/506 (29%), Positives = 229/506 (45%), Gaps = 52/506 (10%)

Query: 8   DHISDLPTFIIHHIMSFL-SPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRV 66
           D IS LP   IHHI+SFL S K+  RT ILS  WR    SF VL F++ ++L     K  
Sbjct: 54  DTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSYL-----KAE 108

Query: 67  LPFNLEDMMSRKNFCKSLRKFIRFVDASL--HRFCELGFPMQKLRISVSLLEVKESSPLF 124
           +  N +         K  +KFI  +D SL  H    LG     LRI+  L+         
Sbjct: 109 VGLNSD---------KQRQKFIDSIDNSLQSHLTQNLGIYKLVLRITPELVS------HL 153

Query: 125 DKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCA-NLQ 183
            +WV++A ENG+ ELD  V T +     +P  + S K L+ L+L G  L   S  A    
Sbjct: 154 KRWVDMAGENGLGELDIHVETTRKRCK-VPLCMHSIKTLSGLRLQG--LYWSSFEALEFN 210

Query: 184 SLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQE 243
           +L+KL L  ++V+ Q++Q LV  C +L DL    C GL  L+IS + KL+ + L +    
Sbjct: 211 NLQKLYLRRLHVDPQLIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVDL-YQCHF 269

Query: 244 LESVEIAVPSLQQLELSFSRVPRL-LDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE 302
           L  VE+ VPSL+       +     L++  C  L++L L  P   +  F+ L+  FP+LE
Sbjct: 270 LRRVELQVPSLKTFWYCAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFNKLLVSFPVLE 329

Query: 303 DLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPC 362
            L++   + L+ I I++  L  L +  C  L  I+VD+    S D+      +V      
Sbjct: 330 KLNLSRCDKLQIIGIANVELQSLGLRCCKRLKHIDVDSLKPCSLDYHGR--EMVHAFGCL 387

Query: 363 PL---NVLFSNFGDIDTHWYLNLMEFIGAF--NQIGELHLSLNYKQVLFNIDEFRSCH-P 416
           PL    +   +    D   +     FI +F         + + + + +   DE +    P
Sbjct: 388 PLKEAKISLVSKKKEDPSAFPTRNVFIRSFLGRHCKGFKIIVWFCKNVIIHDEIKDIFLP 447

Query: 417 SLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFY 476
           SLP           +   +     +  + LL+DL    +P+ + ++       P  +  +
Sbjct: 448 SLP-----------NLKFHAIKPSTNAKDLLEDLLTKEHPERIIVASSFSSEVPHAL--H 494

Query: 477 DHLQNISTNCCN--GCQIKCWRHYLK 500
                + T+CC+      KCWRH+LK
Sbjct: 495 KIKGEVETSCCSYINSNRKCWRHFLK 520

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
TAIR|locus:2162484	466	AT5G22730 "AT5G22730" [Arabido	0.316	0.356	0.272	4.3e-16
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.291	0.367	0.292	2.1e-13
TAIR|locus:2162499	443	AT5G22670 "AT5G22670" [Arabido	0.340	0.404	0.273	1.4e-12
TAIR|locus:2161053	422	AT5G56420 "AT5G56420" [Arabido	0.495	0.616	0.253	1.4e-12
TAIR|locus:2037558	452	AT1G78760 "AT1G78760" [Arabido	0.504	0.586	0.249	1.6e-12
TAIR|locus:2152950	540	AT5G41840 [Arabidopsis thalian	0.365	0.355	0.276	4.2e-12
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.281	0.324	0.283	6.1e-12
TAIR|locus:2085013	532	AT3G42770 "AT3G42770" [Arabido	0.356	0.351	0.310	6.8e-12
TAIR|locus:2151246	258	AT5G02920 "AT5G02920" [Arabido	0.247	0.503	0.274	9.2e-12
TAIR|locus:2037578	458	AT1G78750 "AT1G78750" [Arabido	0.554	0.635	0.248	1.5e-11

TAIR|locus:2162484 AT5G22730 "AT5G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.3e-16, Sum P(3) = 4.3e-16
 Identities = 49/180 (27%), Positives = 86/180 (47%)

Query:    67 LPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDK 126
             L  + E+      F   + KFI F  +   + C     + KL++S S   V +  P   +
Sbjct:    70 LDLDSEEFQDYNAFVGFMNKFIDF--SGEEKIC-----LDKLKLS-SRKTVNDL-PCVTR 120

Query:   127 WVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLK 186
             W++  +   +K LD E + ++  +  +P +++    L +L+L    L +     +L  LK
Sbjct:   121 WIDFVVRRKLKHLDVECLVNRKFLEEMPLSLYVCDTLVNLRLHRVLLGK-FEAVSLPCLK 179

Query:   187 KLSLDE-VYVNDQMVQSLVRECRVLEDLSFFYCF--GLKRLRISEAHKLKSLILRFTYQE 243
              + L+E VY ND +++SL+  C VL+DL     F   +K LR+     L SL + F + E
Sbjct:   180 TMRLEENVYANDVVLESLISSCPVLKDLIILRMFEDNVKVLRVHSL-TLTSLNIDFNFGE 238

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 48/164 (29%), Positives = 79/164 (48%)

Query:    81 CKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELD 140
             C      +RF+   L      G P+ K ++S S    K+  P  D+W+     NG+KEL 
Sbjct:    62 CVVETNLVRFITGVL--LLHQG-PIHKFQLSTSF---KQCRPDIDQWLLFLSRNGIKELV 115

Query:   141 FEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMV 200
              ++   +  V   P  +F+   LT L+L  C+ + P +      LK L+L ++ V  +++
Sbjct:   116 LKLGEGEFRV---PACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVI 172

Query:   201 QSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQEL 244
             +SL+  C +LE LS  Y F    L IS A  L  L L   ++++
Sbjct:   173 ESLISGCPLLEFLSLSY-FDSLVLSIS-APNLMYLYLDGEFKDI 214

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162499 AT5G22670 "AT5G22670" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
 Identities = 56/205 (27%), Positives = 96/205 (46%)

Query:    66 VLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLF- 124
             +L FN+ +      F + +  F+   D S    C     + KL+++    E K+    + 
Sbjct:    52 LLEFNVSEFHGYYEFARVVHGFL---DTS-RETC-----IHKLKLA---FEKKQHDRSYL 99

Query:   125 DKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQS 184
              +W+  A++  V+ LD    +       +P ++++ + L SL+L    L    H  +L  
Sbjct:   100 TQWIHNAVKRKVQHLDIGRWSYLGQ-ELIPHSLYTCETLVSLRLHNVSLPDFDH-VSLPR 157

Query:   185 LKKLSL-DEVYVNDQMVQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLILRFT- 240
             LK + L D +Y ND ++++L+  C VLEDL+        +K LR+     LKSLIL    
Sbjct:   158 LKTMHLIDNIYPNDALLENLISSCPVLEDLNVSRDVENIVKVLRVRSL-SLKSLILALDG 216

Query:   241 --YQELE--SVEIAV--PSLQQLEL 259
               Y ++E  S E+ +  P L  L L
Sbjct:   217 DRYGDIEDDSWEVVIDAPRLSYLSL 241

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161053 AT5G56420 "AT5G56420" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 72/284 (25%), Positives = 126/284 (44%)

Query:    73 DMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISV-SLLEVKESSPLFDKWVELA 131
             D+    N C    +F +FVD SL         ++ L I + S+    E       WV + 
Sbjct:    51 DLRLHDNTCP---RFSQFVDRSL--LLHKAPTLESLNIKIGSICFTAEKD--VGVWVRIG 103

Query:   132 MENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLD 191
             ++  V+EL     + +  +  LP+ +F+   L  LKL    LE  S     QSLK L L 
Sbjct:   104 VDRFVRELSVSYCSGEEPIR-LPKCLFTCSTLAVLKLENITLEDASCYVCFQSLKTLHLL 162

Query:   192 EV-YVNDQMVQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLILRFTYQELESVE 248
             +V Y++DQ +  ++  C  LEDL    C G  +K + ++ A  LK+L L  + Q  E  +
Sbjct:   163 DVKYLDDQSLPRIISSCSSLEDLVVQRCPGDNVKVVTVT-APSLKTLSLHKSSQAFEGDD 221

Query:   249 ----IAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL 304
                 I  P L+++++          +   P + +  + + + N ++    I+    L  L
Sbjct:   222 DGFLIDTPKLKRVDIE-DYWGGFCYIENMPEVVEANVDVIYKNTEKLLGSITSVKRLA-L 279

Query:   305 SIISLETLERIMISSNRLMHLEVYNCSG-----LNRINVDAPNL 343
              +I+ +         ++L+HLE+  C+      L R+  D+P L
Sbjct:   280 CLITSDAAYPAGTIFSQLVHLELCTCAPRWWDLLTRLIEDSPKL 323

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037558 AT1G78760 "AT1G78760" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
 Identities = 73/293 (24%), Positives = 132/293 (45%)

Query:    87 FIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITD 146
             F+ FVD  L    E  F  Q  R+     E + +     +W+ + ++  +K LD    T 
Sbjct:    71 FVSFVDRFLALDRESCF--QSFRLRYDCDEEERTISNVKRWINIVVDQKLKVLDVLDYTW 128

Query:   147 KNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEV-YVNDQMVQSLVR 205
              N    +P ++++ + L SLKL    L  P    +L  +K + LD V + N  +++ ++ 
Sbjct:   129 GNEEVQIPPSVYTCESLVSLKLCNVILPNPK-VISLPLVKVIELDIVKFSNALVLEKIIS 187

Query:   206 ECRVLEDL--SFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAV--PSLQQLELSF 261
              C  LE L  S      +  LR+S    L    +       + +E+A+  P L+ L +S 
Sbjct:   188 SCSALESLIISRSSVDDINVLRVSSRSLLSFKHIGNCSDGWDELEVAIDAPKLEYLNISD 247

Query:   262 SRVPR--LLDVAECPHLRKLVLF----LPHFNDQEFHPLISKFPLLEDLSIISLETLERI 315
                 +  + +       +  ++F    LPH ND+    +I  F  L ++S     +++++
Sbjct:   248 HSTAKFKMKNSGSLVEAKINIIFNMEELPHPNDRPKRKMIQDF--LAEIS-----SVKKL 300

Query:   316 MISSNRLMHLEVYNCS-GLNRINVDAPNLVSFDFEDNPIPIVSTNAP-CPLNV 366
              ISS+ L  +    C   L R N+ + ++   DFED+ + ++ST    CP NV
Sbjct:   301 FISSHTLEVIHDLGCELPLFR-NLSSLHI---DFEDHTLKMLSTFLQSCP-NV 348

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2152950 AT5G41840 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 60/217 (27%), Positives = 100/217 (46%)

Query:     5 VDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVK 64
             V  D IS LP  +I HI+SFL  K+   T +L+  W+      P L+FD + +    R +
Sbjct:    11 VSGDRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYF-HPRAR 69

Query:    65 RVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLF 124
             R              + KS   F+ FVD+ L    +   P+++  +     +V + S + 
Sbjct:    70 R------------NKYSKSYESFMSFVDSVLALQAKTKTPLKRFHVKCE--DVVDQSWVL 115

Query:   125 DKWVELAMENGVKELDFEVITDKN-----SVNALPQTIFSAKLLTSLKL-F--GCKLEQP 176
             + W+   ++ GV ++D  + + +N     S  +LP  IF +K L  LK+ F  G  ++  
Sbjct:   116 E-WIPKVLKRGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVE 174

Query:   177 SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213
                 +L  LK L LD   +   M+  L+  C  LE+L
Sbjct:   175 GG-VSLPKLKTLHLDYFKIETSMLNKLLSGCHALEEL 210

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
 Identities = 44/155 (28%), Positives = 75/155 (48%)

Query:   122 PLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ----PS 177
             P  D W+E A+   V+ L   V     S       IF   L +SLKL    L+     P+
Sbjct:   105 PQVDSWIEFALSRNVQNLSVFVRDFTYSKTYRFPDIFY--LSSSLKLLDVTLDFFDMIPT 162

Query:   178 HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL 237
                + +SL+ L+L    + D+ + +++  C +LE L+   C  L+RL +S++  L+ L +
Sbjct:   163 CTVSWKSLRNLTLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLDI 222

Query:   238 RFTYQELESVEIAVPSLQQLELSFSRVPR-LLDVA 271
                Y+    V I  P +  L L++S  P  ++DV+
Sbjct:   223 NQQYRRTGPVAIVAPHIYYLRLTYSSTPSTIVDVS 257

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085013 AT3G42770 "AT3G42770" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 6.8e-12, P = 6.8e-12
 Identities = 64/206 (31%), Positives = 100/206 (48%)

Query:    13 LPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLE 72
             LP  ++  I+SFL  K+   T +LS  WR   T  P LDFD N+ L++S+ ++   +N+ 
Sbjct:     4 LPDELLVQILSFLPTKEATSTSLLSKRWRTLFTLSPNLDFD-NSLLLQSKKRK---WNM- 58

Query:    73 DMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAM 132
                  +N  KS   F+ FVD++L      G     L+   +L +V     + ++W+  A+
Sbjct:    59 -----RNIQKS---FVGFVDSTLALQGGKGIKSFSLKFKETLGDVNGEVDV-NRWICNAL 109

Query:   133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLF--GCKLEQPSHCANLQSLKKLSL 190
             E+GV EL   +   K     LP  IF++  L  L L    C    P+ C +L SLK L L
Sbjct:   110 EHGVSELHLRIDYTKRC--HLPSEIFTSTKLVKLSLVTQSCFPVVPN-CISLPSLKVLFL 166

Query:   191 DEVYVNDQMVQSLVRECRVLEDLSFF 216
             D ++         +  C  LEDL+ +
Sbjct:   167 DSIWFEVPQFLIFLTACPALEDLTIY 192

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2151246 AT5G02920 "AT5G02920" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
 Identities = 37/135 (27%), Positives = 66/135 (48%)

Query:   128 VELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKK 187
             +E AM + V  L     +     N  P   +++  L  ++L    L  PS   +  SL+ 
Sbjct:   115 IEFAMSHNVDNLSL-AFSSFPPCNKFPDFFYTSSSLKRVELRSASLT-PSCIVSWTSLRD 172

Query:   188 LSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL--RFTYQE-L 244
             LSL    ++D+    ++  C +LE LS  +C  LK L +S++ +L  L +  R  ++E +
Sbjct:   173 LSLTRCNLSDKSFLKILSGCPILESLSLKFCESLKYLDLSKSLRLTRLEIERRSCFREPM 232

Query:   245 ESVEIAVPSLQQLEL 259
             +S++I  P +  L L
Sbjct:   233 QSMQIVAPHIHYLRL 247

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 78/314 (24%), Positives = 138/314 (43%)

Query:    64 KRVLPFNLE--DMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESS 121
             K V  FNL   D   R  F      F+RFVD S   F      +Q  R+        E  
Sbjct:    55 KYVPGFNLSYCDFHVRNTFSYDHNTFLRFVD-SFMGFNSQSC-LQSFRLEYDSSGYGEPK 112

Query:   122 -PLFDKWVELAMENGVKELDFEVITDK--NSVNALPQTIFSAKLLTSLKLFGCKLEQPSH 178
               L  +W+   +   VK L   V+ D   N    +P T+++ + L  L L G  L  P  
Sbjct:   113 LALIRRWINSVVSRKVKYLG--VLDDSCDNYEFEMPPTLYTCETLVYLTLDGLSLASPKF 170

Query:   179 CANLQSLKKLSLDEVYVNDQM-VQSLVRECRVLEDLSF--FYCFGLKRLRISEAHKLKSL 235
               +L SLK+L L  V   D M +++L+ +C VLE+L+    +C   +   +     L   
Sbjct:   171 -VSLPSLKELHLSIVKFADHMALETLISQCPVLENLNINRSFCDDFEFTCVRSQSLLSFT 229

Query:   236 ILRFTYQEL-ESVEIAV--PSLQQLELSFSRVPRLL--DVAECPHLRKLVLFLPHFNDQE 290
              +  T + L E + +A+  P L+ L LS  R+   +  D+A         +F      + 
Sbjct:   230 HVADTDEMLNEDLVVAIDAPKLKYLRLSDHRIASFILNDLASLVEADIDTVF-NLICKKM 288

Query:   291 FHPL-ISKFPLLEDLSIISLETLERIMISSNRLMHLEVYN-CSGLNRI-NVDAPNLVSFD 347
             F+P  ++K  ++ D  ++ + +++ ++I+S+ L  +  Y+ C  L    N+ +  +  + 
Sbjct:   289 FNPNDLNKRNMIRDF-LVGISSIKTLIIASSTLEVIYDYSRCEPLPLFRNLSSLRVDFYG 347

Query:   348 FEDNPIPIVSTNAP 361
             ++   +PI   + P
Sbjct:   348 YKWEMLPIFLESCP 361

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1460040 hypothetical protein (528 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	525
pfam00646	48	pfam00646, F-box, F-box domain	0.004

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 8  DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVL 50
            + DLP  ++  I+S L PKD++R  ++S  WR    S  + 
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLW 43

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	525
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.72
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.69
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.68
KOG4341	483	consensus F-box protein containing LRR [General fu	99.63
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.5
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.5
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.46
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.42
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.26
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.2
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.11
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.08
KOG4341	483	consensus F-box protein containing LRR [General fu	99.08
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.02
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.93
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.93
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.92
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.86
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.8
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.78
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.64
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.61
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.58
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.56
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.49
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.43
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.42
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.32
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.31
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.23
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.21
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.19
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.02
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.93
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.81
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.8
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.56
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.53
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.43
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.4
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.35
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.29
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.29
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.26
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.07
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.05
PLN03150	623	hypothetical protein; Provisional	96.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.92
PLN03150	623	hypothetical protein; Provisional	96.92
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.79
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.69
PRK15386	426	type III secretion protein GogB; Provisional	96.68
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.29
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.17
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.1
PRK15386	426	type III secretion protein GogB; Provisional	96.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.02
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	95.79
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.74
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.63
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	95.48
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.4
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.33
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.15
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	94.82
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	94.68
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.4
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.81
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.76
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	92.59
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.72
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	87.58
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	87.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	86.98
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.85
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	84.69
PF13013	109	F-box-like_2: F-box-like domain	82.73
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	82.61
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	82.19
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	80.75

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=3.5e-19  Score=163.20  Aligned_cols=274  Identities=21%  Similarity=0.270  Sum_probs=150.8

Q ss_pred             CCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhhhccCC---eeEeecCccccccccccccccchhhhhhhhhhhHhHhH
Q 009796           10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFP---VLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRK   86 (525)
Q Consensus        10 is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw~~~~---~l~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   86 (525)
                      +..|||||+..||+.|+.+|+.+.+.|||||+++-+.-.   .++.......                            
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~----------------------------  149 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIH----------------------------  149 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccC----------------------------
Confidence            578999999999999999999999999999998633211   1222222220                            


Q ss_pred             HHHHHHHHhhccccCCcccceEEEEEeeccccCCchhHHHHHHH--HHHcCCeEEEEEeecCCCCcccCCccccCCCCcc
Q 009796           87 FIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVEL--AMENGVKELDFEVITDKNSVNALPQTIFSAKLLT  164 (525)
Q Consensus        87 ~~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wl~~--~~~~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~  164 (525)
                       .....+.+ +     .+|..|++.-...+    .   .+...+  ....+++++|++.  .......+-.-+..|..|+
T Consensus       150 -p~~l~~l~-~-----rgV~v~Rlar~~~~----~---prlae~~~~frsRlq~lDLS~--s~it~stl~~iLs~C~kLk  213 (419)
T KOG2120|consen  150 -PDVLGRLL-S-----RGVIVFRLARSFMD----Q---PRLAEHFSPFRSRLQHLDLSN--SVITVSTLHGILSQCSKLK  213 (419)
T ss_pred             -hhHHHHHH-h-----CCeEEEEcchhhhc----C---chhhhhhhhhhhhhHHhhcch--hheeHHHHHHHHHHHHhhh
Confidence             11222333 1     23333333311100    0   111111  1233577777765  2222223333344566666


Q ss_pred             EEEecCCcCCC--CCCCCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeec
Q 009796          165 SLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY  241 (525)
Q Consensus       165 ~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~  241 (525)
                      .|.|.|+.+.+  ...++.-.+|+.|+|+.+.. +..+++-++.+|..|.+|+|+.|....+..                
T Consensus       214 ~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V----------------  277 (419)
T KOG2120|consen  214 NLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKV----------------  277 (419)
T ss_pred             hccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhh----------------
Confidence            66666666555  23344455666666666544 555566666666666666666665432210                


Q ss_pred             cccceEE-EeCCCccEEEecccc-----ccceeeccCCCCccEEEeeCCC-CChhhhhhhhcCCCCCcEEEecCccchhH
Q 009796          242 QELESVE-IAVPSLQQLELSFSR-----VPRLLDVAECPHLRKLVLFLPH-FNDQEFHPLISKFPLLEDLSIISLETLER  314 (525)
Q Consensus       242 ~~l~~~~-~~~~~L~~L~l~~~~-----~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~ll~~~~~Le~L~L~~c~~l~~  314 (525)
                         ..+. --.++|..|+++|+.     .+...-...||+|..|+|+.+. ++. .....+..++.|++|.++.|..+..
T Consensus       278 ---tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p  353 (419)
T KOG2120|consen  278 ---TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIP  353 (419)
T ss_pred             ---hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCCh
Confidence               0000 012444444444444     1112233466777777775544 344 4566677899999999999976432


Q ss_pred             hh----hcCcccceEcccccc---chhhhcccCCCcceEE
Q 009796          315 IM----ISSNRLMHLEVYNCS---GLNRINVDAPNLVSFD  347 (525)
Q Consensus       315 ~~----~~~~~L~~L~l~~c~---~L~~l~~~~p~L~~l~  347 (525)
                      -.    .+.|.|.+|++.+|-   .++.+...+|+|+...
T Consensus       354 ~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lkin~  393 (419)
T KOG2120|consen  354 ETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKINC  393 (419)
T ss_pred             HHeeeeccCcceEEEEeccccCchHHHHHHHhCccccccc
Confidence            11    124789999998863   3455666677775543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.69  E-value=1.4e-16  Score=181.87  Aligned_cols=262  Identities=14%  Similarity=0.151  Sum_probs=174.7

Q ss_pred             cCCeEEEEEeecCCCCcccCCcccc-CCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIF-SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~  212 (525)
                      ++++.|++..  + .....+|..++ .+++|++|+|++|.+.+....+.+++|++|+|++|.++. .++..++++++|++
T Consensus        93 ~~L~~L~Ls~--n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~  168 (968)
T PLN00113         93 PYIQTINLSN--N-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG-EIPNDIGSFSSLKV  168 (968)
T ss_pred             CCCCEEECCC--C-ccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccc-cCChHHhcCCCCCE
Confidence            5788888865  2 22346777776 788999999999888762223568899999999888743 24555788899999


Q ss_pred             EEEeecCCCcee--ecccCCCccEEEEeeec--cccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCC
Q 009796          213 LSFFYCFGLKRL--RISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHF  286 (525)
Q Consensus       213 L~L~~c~~l~~l--~i~~l~~L~~L~l~~c~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~  286 (525)
                      |++++|.....+  .+.++++|+.|++++|.  ..++.....+++|+.|+++++.  ...+..++.+++|+.|+++++.+
T Consensus       169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence            999888653332  34567889999988886  1222222357888888888887  45666778888888888888887


Q ss_pred             ChhhhhhhhcCCCCCcEEEecCccchhH---hhhcCcccceEccccccch---hhhcccCCCcceEEEecCCCC----cc
Q 009796          287 NDQEFHPLISKFPLLEDLSIISLETLER---IMISSNRLMHLEVYNCSGL---NRINVDAPNLVSFDFEDNPIP----IV  356 (525)
Q Consensus       287 ~~~~~~~ll~~~~~Le~L~L~~c~~l~~---~~~~~~~L~~L~l~~c~~L---~~l~~~~p~L~~l~~~g~~~~----~~  356 (525)
                      ++. ++..+.++++|+.|+++++.....   .....++|+.|++++|.-.   .......++|+.|.+.++.+.    ..
T Consensus       249 ~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~  327 (968)
T PLN00113        249 TGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA  327 (968)
T ss_pred             ccc-cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence            764 455577888888888887653221   1223467888888775421   122235677788877776542    33


Q ss_pred             cccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeee
Q 009796          357 STNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVL  405 (525)
Q Consensus       357 ~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~  405 (525)
                      +..+++|+.+++.. +..    ...++..+..+++|+.|+++.|.....
T Consensus       328 ~~~l~~L~~L~L~~-n~l----~~~~p~~l~~~~~L~~L~Ls~n~l~~~  371 (968)
T PLN00113        328 LTSLPRLQVLQLWS-NKF----SGEIPKNLGKHNNLTVLDLSTNNLTGE  371 (968)
T ss_pred             HhcCCCCCEEECcC-CCC----cCcCChHHhCCCCCcEEECCCCeeEee
Confidence            44577788888763 221    122344556677777777776655543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.68  E-value=1.9e-16  Score=180.70  Aligned_cols=59  Identities=22%  Similarity=0.185  Sum_probs=26.9

Q ss_pred             CCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecC
Q 009796          160 AKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF  219 (525)
Q Consensus       160 ~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~  219 (525)
                      +++|++|+|++|.+..  +..++++++|++|+|++|.+.. .++..+.++++|++|++++|.
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~  199 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQ  199 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc-cCChhhhhCcCCCeeeccCCC
Confidence            3445555555554443  3344445555555555544321 122233444555555555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.63  E-value=7.1e-18  Score=161.52  Aligned_cols=32  Identities=28%  Similarity=0.577  Sum_probs=30.8

Q ss_pred             CCCHHHHHHHhcCCChHHHHHHhhhchhhhhh
Q 009796           12 DLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF   43 (525)
Q Consensus        12 ~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~l   43 (525)
                      .||.|++.+|||+|+++.++|++++|+-|..+
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~  105 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKL  105 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Confidence            59999999999999999999999999999976

>PLN03210 Resistant to P

Probab=99.50  E-value=8.6e-14  Score=159.82  Aligned_cols=272  Identities=18%  Similarity=0.178  Sum_probs=140.1

Q ss_pred             CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .++.|++..    .....+|..+ ...+|+.|+++++.+.. +.....+++|+.|+|+++..- ..++. ++.+++|++|
T Consensus       590 ~Lr~L~~~~----~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L  662 (1153)
T PLN03210        590 KLRLLRWDK----YPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETL  662 (1153)
T ss_pred             ccEEEEecC----CCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEE
Confidence            566666644    2234555543 45677777777777665 555666777777777765431 11222 4566777777


Q ss_pred             EEeecCCCceee--cccCCCccEEEEeeeccccceEE--EeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCC
Q 009796          214 SFFYCFGLKRLR--ISEAHKLKSLILRFTYQELESVE--IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFN  287 (525)
Q Consensus       214 ~L~~c~~l~~l~--i~~l~~L~~L~l~~c~~~l~~~~--~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~  287 (525)
                      +|.+|..+..++  +..+++|+.|++++|. .+..+.  +++++|+.|++++|.  ...+   ...++|+.|+++++.+.
T Consensus       663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~-~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p---~~~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCE-NLEILPTGINLKSLYRLNLSGCSRLKSFP---DISTNISWLDLDETAIE  738 (1153)
T ss_pred             EecCCCCccccchhhhccCCCCEEeCCCCC-CcCccCCcCCCCCCCEEeCCCCCCccccc---cccCCcCeeecCCCccc
Confidence            777776655443  3356677777777765 333221  245666666666664  1111   11234444544444332


Q ss_pred             hhh----------------------------hhhhhcCCCCCcEEEecCccchhHhh---hcCcccceEccccccchhhh
Q 009796          288 DQE----------------------------FHPLISKFPLLEDLSIISLETLERIM---ISSNRLMHLEVYNCSGLNRI  336 (525)
Q Consensus       288 ~~~----------------------------~~~ll~~~~~Le~L~L~~c~~l~~~~---~~~~~L~~L~l~~c~~L~~l  336 (525)
                      .-.                            .......+++|+.|+|++|..+..+.   ..+++|+.|++.+|.+++.+
T Consensus       739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L  818 (1153)
T PLN03210        739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL  818 (1153)
T ss_pred             cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence            100                            00001123466666666665433322   22456777777777666554


Q ss_pred             cc--cCCCcceEEEecCCCCcccc-cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccc
Q 009796          337 NV--DAPNLVSFDFEDNPIPIVST-NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRS  413 (525)
Q Consensus       337 ~~--~~p~L~~l~~~g~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~  413 (525)
                      +.  ..++|+.|.++|+..-..+. ...+|+.++++. +.     ...++..+..+++|+.|+++.|.....  +|    
T Consensus       819 P~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~-n~-----i~~iP~si~~l~~L~~L~L~~C~~L~~--l~----  886 (1153)
T PLN03210        819 PTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSR-TG-----IEEVPWWIEKFSNLSFLDMNGCNNLQR--VS----  886 (1153)
T ss_pred             CCCCCccccCEEECCCCCccccccccccccCEeECCC-CC-----CccChHHHhcCCCCCEEECCCCCCcCc--cC----
Confidence            32  34566666666654221111 134566666642 11     112344456666777766665433332  22    


Q ss_pred             cCCCCCCCcccceEEEEE
Q 009796          414 CHPSLPLQVESLSLFMES  431 (525)
Q Consensus       414 ~~~~~~~~~~L~~L~L~~  431 (525)
                        .....+++|+.|.+.+
T Consensus       887 --~~~~~L~~L~~L~l~~  902 (1153)
T PLN03210        887 --LNISKLKHLETVDFSD  902 (1153)
T ss_pred             --cccccccCCCeeecCC
Confidence              1233445555555553

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.50  E-value=2.3e-15  Score=149.68  Aligned_cols=242  Identities=15%  Similarity=0.091  Sum_probs=135.1

Q ss_pred             CCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCC--CceeecccCCCccEEE
Q 009796          161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLI  236 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~--l~~l~i~~l~~L~~L~  236 (525)
                      .++++|+|++|.++.  ...+.++.+|.+|.|+.|+++.- ....+.+.|+|+.|+|..|..  .+.+...++++|+.|.
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk  251 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK  251 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence            567777777776665  44556666777777777776432 234455677777777766643  2334455667777777


Q ss_pred             Eeeec-cccceEE-EeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccch
Q 009796          237 LRFTY-QELESVE-IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL  312 (525)
Q Consensus       237 l~~c~-~~l~~~~-~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l  312 (525)
                      +..|. ..+..-. ..+.++++|++..+.  .....++-+++.|+.|+|++|.|...... --+-++.|+.|+|++..  
T Consensus       252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-~WsftqkL~~LdLs~N~--  328 (873)
T KOG4194|consen  252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID-SWSFTQKLKELDLSSNR--  328 (873)
T ss_pred             hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc-hhhhcccceeEeccccc--
Confidence            76665 3333222 256666666666665  22233455666666666666665542111 12345666666666522  


Q ss_pred             hHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCC----cccccCCCCceEEEEeeecCChhccccHHHHHHh
Q 009796          313 ERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGA  388 (525)
Q Consensus       313 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~  388 (525)
                               +..|+-....       ....|+.|.++.+.+.    ..+..+++|++|+++. +.+... .+.....+..
T Consensus       329 ---------i~~l~~~sf~-------~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~-N~ls~~-IEDaa~~f~g  390 (873)
T KOG4194|consen  329 ---------ITRLDEGSFR-------VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS-NELSWC-IEDAAVAFNG  390 (873)
T ss_pred             ---------cccCChhHHH-------HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC-CeEEEE-Eecchhhhcc
Confidence                     1111111100       0122333334444332    2344577888888864 222211 2224456677


Q ss_pred             ccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796          389 FNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (525)
Q Consensus       389 l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~  432 (525)
                      +++|++|.+.+|..+.   ||.-     .+..+.+|.+|+|.+|
T Consensus       391 l~~LrkL~l~gNqlk~---I~kr-----Afsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  391 LPSLRKLRLTGNQLKS---IPKR-----AFSGLEALEHLDLGDN  426 (873)
T ss_pred             chhhhheeecCceeee---cchh-----hhccCcccceecCCCC
Confidence            8999999998877765   3322     3455888999999887

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.46  E-value=9e-15  Score=145.55  Aligned_cols=283  Identities=16%  Similarity=0.149  Sum_probs=167.7

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le  211 (525)
                      .+++++.+..    .....+|.......+|+.|+|.+|.++.  ......+|.|++|+|+.|.++.-. ...+..-++|+
T Consensus       102 ~nLq~v~l~~----N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~-~~sfp~~~ni~  176 (873)
T KOG4194|consen  102 PNLQEVNLNK----NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIP-KPSFPAKVNIK  176 (873)
T ss_pred             Ccceeeeecc----chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhccc-CCCCCCCCCce
Confidence            3555555543    3344555554455556666666666655  344555666666666666552210 01122335677


Q ss_pred             EEEEeecCC--CceeecccCCCccEEEEeeec-cccceEEE-eCCCccEEEecccc--ccceeeccCCCCccEEEeeCCC
Q 009796          212 DLSFFYCFG--LKRLRISEAHKLKSLILRFTY-QELESVEI-AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPH  285 (525)
Q Consensus       212 ~L~L~~c~~--l~~l~i~~l~~L~~L~l~~c~-~~l~~~~~-~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~  285 (525)
                      +|+|++|..  +..-...++.+|..|.++.|. ..++.-.+ .+|.|+.|++..+.  ......|.++++|+.|.|..|.
T Consensus       177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~  256 (873)
T KOG4194|consen  177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND  256 (873)
T ss_pred             EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence            777777653  222334455677777777775 33333333 37777888777776  1113356777788888877777


Q ss_pred             CChhhhhhhhcCCCCCcEEEecCccchhHhh----hcCcccceEccccccchhhhcc----cCCCcceEEEecCCCC---
Q 009796          286 FNDQEFHPLISKFPLLEDLSIISLETLERIM----ISSNRLMHLEVYNCSGLNRINV----DAPNLVSFDFEDNPIP---  354 (525)
Q Consensus       286 ~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~----~~~~~L~~L~l~~c~~L~~l~~----~~p~L~~l~~~g~~~~---  354 (525)
                      +..- -...+-.+.++++|+|..... ..+.    .....|+.|++++ +.++.+.+    .+++|+.|+++.+.+.   
T Consensus       257 I~kL-~DG~Fy~l~kme~l~L~~N~l-~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  257 ISKL-DDGAFYGLEKMEHLNLETNRL-QAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             cccc-cCcceeeecccceeecccchh-hhhhcccccccchhhhhccch-hhhheeecchhhhcccceeEeccccccccCC
Confidence            6541 123456677788888776432 2111    1234566666664 22333322    3567777777776653   


Q ss_pred             -cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009796          355 -IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS  433 (525)
Q Consensus       355 -~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~  433 (525)
                       .++..+++|++|.+++ +.+.+.    -..-+..+++|++|+|+.|.....+   ||...  .+..++.|+.|.+.+|.
T Consensus       334 ~~sf~~L~~Le~LnLs~-Nsi~~l----~e~af~~lssL~~LdLr~N~ls~~I---EDaa~--~f~gl~~LrkL~l~gNq  403 (873)
T KOG4194|consen  334 EGSFRVLSQLEELNLSH-NSIDHL----AEGAFVGLSSLHKLDLRSNELSWCI---EDAAV--AFNGLPSLRKLRLTGNQ  403 (873)
T ss_pred             hhHHHHHHHhhhhcccc-cchHHH----HhhHHHHhhhhhhhcCcCCeEEEEE---ecchh--hhccchhhhheeecCce
Confidence             3444578889999975 444432    2334678899999999998888775   44322  35568999999999884


Q ss_pred             e
Q 009796          434 L  434 (525)
Q Consensus       434 ~  434 (525)
                      +
T Consensus       404 l  404 (873)
T KOG4194|consen  404 L  404 (873)
T ss_pred             e
Confidence            4

>PLN03210 Resistant to P

Probab=99.42  E-value=9.7e-13  Score=151.24  Aligned_cols=256  Identities=18%  Similarity=0.165  Sum_probs=138.0

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCc-CCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCK-LEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~  212 (525)
                      .++++|++..    .....+|..+..+++|+.|+|++|. +...+....+++|++|+|++|..- ..++..+.++++|++
T Consensus       611 ~~L~~L~L~~----s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~  685 (1153)
T PLN03210        611 ENLVKLQMQG----SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLED  685 (1153)
T ss_pred             cCCcEEECcC----ccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCE
Confidence            3566666544    1233455555666677777776653 222334556677777777666431 124444566677777


Q ss_pred             EEEeecCCCceeecc-cCCCccEEEEeeeccccceEEEeCCCccEEEecccc-ccceeec--------------------
Q 009796          213 LSFFYCFGLKRLRIS-EAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDV--------------------  270 (525)
Q Consensus       213 L~L~~c~~l~~l~i~-~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~--------------------  270 (525)
                      |++++|..+..++.. ++++|+.|++++|. .+..+....++|+.|+++++. ...+..+                    
T Consensus       686 L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~  764 (1153)
T PLN03210        686 LDMSRCENLEILPTGINLKSLYRLNLSGCS-RLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE  764 (1153)
T ss_pred             EeCCCCCCcCccCCcCCCCCCCEEeCCCCC-CccccccccCCcCeeecCCCccccccccccccccccccccccchhhccc
Confidence            777777665555432 45667777777665 333333234566666666665 2211110                    


Q ss_pred             ----------cCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhh--cCcccceEccccccchhhhcc
Q 009796          271 ----------AECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMI--SSNRLMHLEVYNCSGLNRINV  338 (525)
Q Consensus       271 ----------~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~--~~~~L~~L~l~~c~~L~~l~~  338 (525)
                                ..+++|+.|+++++..... ++..+.++++|+.|+|++|..++.+..  ..++|+.|++++|.++..+..
T Consensus       765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             cccccchhhhhccccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence                      0123455555555543332 334456667777777777665554432  245667777777766655544


Q ss_pred             cCCCcceEEEecCCC---CcccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEe
Q 009796          339 DAPNLVSFDFEDNPI---PIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNY  401 (525)
Q Consensus       339 ~~p~L~~l~~~g~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~  401 (525)
                      ..++|+.|.+.++.+   |.++..+++|+.+++..+.....     +..-+..+++|+.|.++.|.
T Consensus       844 ~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~-----l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        844 ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR-----VSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc-----cCcccccccCCCeeecCCCc
Confidence            455666666666544   23344566667776654222221     12223455666666666554

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.26  E-value=4e-14  Score=141.91  Aligned_cols=299  Identities=14%  Similarity=0.114  Sum_probs=200.9

Q ss_pred             CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .++-|.|..    .....+|..+..|.+|++|.+++|.+.. .-....+|+||.+.+..|.....+++.-+..+..|..|
T Consensus        33 ~~~WLkLnr----t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~l  108 (1255)
T KOG0444|consen   33 QMTWLKLNR----TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL  108 (1255)
T ss_pred             heeEEEech----hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceee
Confidence            566666643    4566788888889999999999888766 55677788999999988888555667667778888888


Q ss_pred             EEeecCCCceee--cccCCCccEEEEeeec-c-ccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCCh
Q 009796          214 SFFYCFGLKRLR--ISEAHKLKSLILRFTY-Q-ELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND  288 (525)
Q Consensus       214 ~L~~c~~l~~l~--i~~l~~L~~L~l~~c~-~-~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~  288 (525)
                      +|++|.. +..+  +....++-.|++++|. . ....+.+++..|-.|+++.+. ...|..+..+..|++|.|++|.+.-
T Consensus       109 DLShNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h  187 (1255)
T KOG0444|consen  109 DLSHNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH  187 (1255)
T ss_pred             ecchhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH
Confidence            8888753 2222  2234678888888886 2 223345677888888999888 6667778888889999998887654


Q ss_pred             hhhhhhhcCCCCCcEEEecCccc-hhHhhh---cCcccceEccccccch---hhhcccCCCcceEEEecCCCC---cccc
Q 009796          289 QEFHPLISKFPLLEDLSIISLET-LERIMI---SSNRLMHLEVYNCSGL---NRINVDAPNLVSFDFEDNPIP---IVST  358 (525)
Q Consensus       289 ~~~~~ll~~~~~Le~L~L~~c~~-l~~~~~---~~~~L~~L~l~~c~~L---~~l~~~~p~L~~l~~~g~~~~---~~~~  358 (525)
                      --+. -+..+..|+.|++++... +..+.-   ...+|..++++ |++|   ....-..++|+.|.++|+.+.   ....
T Consensus       188 fQLr-QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~  265 (1255)
T KOG0444|consen  188 FQLR-QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEG  265 (1255)
T ss_pred             HHHh-cCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcCceeeeeccHH
Confidence            2222 245566677777776432 111111   12456666665 3334   333345678888888888764   2222


Q ss_pred             cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCC
Q 009796          359 NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDV  438 (525)
Q Consensus       359 ~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  438 (525)
                      ..-.|+.|+++. +     ....++.-+..++.|+.|.+..|...... ||      ..++++.+|..++..+|-     
T Consensus       266 ~W~~lEtLNlSr-N-----QLt~LP~avcKL~kL~kLy~n~NkL~FeG-iP------SGIGKL~~Levf~aanN~-----  327 (1255)
T KOG0444|consen  266 EWENLETLNLSR-N-----QLTVLPDAVCKLTKLTKLYANNNKLTFEG-IP------SGIGKLIQLEVFHAANNK-----  327 (1255)
T ss_pred             HHhhhhhhcccc-c-----hhccchHHHhhhHHHHHHHhccCcccccC-Cc------cchhhhhhhHHHHhhccc-----
Confidence            355677777764 2     23345666778888888888877777766 77      367788888887777762     


Q ss_pred             CchhHHHHHHhHhhhccccceeec
Q 009796          439 VPSEYEILLDDLFWIFYPKNLCLS  462 (525)
Q Consensus       439 ~~~~~~~~~~~Ll~~~~l~~l~l~  462 (525)
                          .+-+...|-+|..|++|.|+
T Consensus       328 ----LElVPEglcRC~kL~kL~L~  347 (1255)
T KOG0444|consen  328 ----LELVPEGLCRCVKLQKLKLD  347 (1255)
T ss_pred             ----cccCchhhhhhHHHHHhccc
Confidence                33344556666667777763

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.20  E-value=5.9e-13  Score=133.68  Aligned_cols=261  Identities=18%  Similarity=0.146  Sum_probs=173.1

Q ss_pred             CCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee-
Q 009796          147 KNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL-  224 (525)
Q Consensus       147 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l-  224 (525)
                      .-....+|..+|.+..|+.|+|++|.+.. |.....-+++-+|+|++|.+.. ....++.+...|-.|+|++|.. ..+ 
T Consensus        89 ~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrL-e~LP  166 (1255)
T KOG0444|consen   89 NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRL-EMLP  166 (1255)
T ss_pred             ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchh-hhcC
Confidence            34556789999999999999999999887 7788888999999999998831 2345667788888899998863 332 


Q ss_pred             -ecccCCCccEEEEeeec-cccceEEE-eCCCccEEEecccc---ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCC
Q 009796          225 -RISEAHKLKSLILRFTY-QELESVEI-AVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKF  298 (525)
Q Consensus       225 -~i~~l~~L~~L~l~~c~-~~l~~~~~-~~~~L~~L~l~~~~---~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~  298 (525)
                       .+..+.+|++|++++|. ...+--.+ .+.+|+.|.+++..   ..+|.++..+.+|..++++.|++..  ++.-+-++
T Consensus       167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l  244 (1255)
T KOG0444|consen  167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKL  244 (1255)
T ss_pred             HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhh
Confidence             24456789999999886 11111111 35667778888877   5677788899999999999998876  56667788


Q ss_pred             CCCcEEEecCccchhHhhh---cCcccceEcccc----------c--cchhhhcccCCCcceEEEecCCCCcccccCCCC
Q 009796          299 PLLEDLSIISLETLERIMI---SSNRLMHLEVYN----------C--SGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCP  363 (525)
Q Consensus       299 ~~Le~L~L~~c~~l~~~~~---~~~~L~~L~l~~----------c--~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~L  363 (525)
                      ++|+.|.|++.. ++.+..   ...+|+.|+++.          |  +.|+.+-.+.++|   .+.|  +|...+.+.+|
T Consensus       245 ~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL---~FeG--iPSGIGKL~~L  318 (1255)
T KOG0444|consen  245 RNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL---TFEG--IPSGIGKLIQL  318 (1255)
T ss_pred             hhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc---cccC--Cccchhhhhhh
Confidence            999999999853 221111   123455555544          1  1222222222222   1222  23334445555


Q ss_pred             ceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796          364 LNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (525)
Q Consensus       364 ~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~  432 (525)
                      +.....      +...+..++-+..|+.|+.|.|++|....   +|+      .+.-++.|+.|+++.|
T Consensus       319 evf~aa------nN~LElVPEglcRC~kL~kL~L~~NrLiT---LPe------aIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  319 EVFHAA------NNKLELVPEGLCRCVKLQKLKLDHNRLIT---LPE------AIHLLPDLKVLDLREN  372 (1255)
T ss_pred             HHHHhh------ccccccCchhhhhhHHHHHhcccccceee---chh------hhhhcCCcceeeccCC
Confidence            554443      22244466777888999999998776543   552      3555788888888864

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.11  E-value=3.7e-11  Score=119.38  Aligned_cols=66  Identities=18%  Similarity=0.141  Sum_probs=31.1

Q ss_pred             CCccccCCCCccEEEecCCcCCC--------CCCCCCCCcccEEEeceeeech---HHHHHHHhCCcCccEEEEeecC
Q 009796          153 LPQTIFSAKLLTSLKLFGCKLEQ--------PSHCANLQSLKKLSLDEVYVND---QMVQSLVRECRVLEDLSFFYCF  219 (525)
Q Consensus       153 lp~~l~~~~~L~~L~L~~~~l~~--------~~~~~~l~~L~~L~L~~~~~~~---~~l~~ll~~c~~Le~L~L~~c~  219 (525)
                      ++..+...++|+.|+++++.+..        +..+..+++|+.|++++|.+..   ..+..+..+ ++|++|++++|.
T Consensus        43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~  119 (319)
T cd00116          43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNG  119 (319)
T ss_pred             HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCc
Confidence            33344445556666666654441        1223345566666666555521   112222222 446666665554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.08  E-value=4.6e-10  Score=120.94  Aligned_cols=255  Identities=19%  Similarity=0.163  Sum_probs=166.0

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~  212 (525)
                      .+-..|++..    .....+|..+.  ++|+.|.+.+|.++. |.   ..++|++|+|++|.++.  ++.   ..++|++
T Consensus       201 ~~~~~LdLs~----~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~  266 (788)
T PRK15387        201 NGNAVLNVGE----SGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLE  266 (788)
T ss_pred             CCCcEEEcCC----CCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc--ccC---cccccce
Confidence            3456666654    23446787665  479999999998886 43   36899999999998742  332   2478999


Q ss_pred             EEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhh
Q 009796          213 LSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF  291 (525)
Q Consensus       213 L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~  291 (525)
                      |++.+|.. ..+.. ..++|+.|++++|.  +..+....++|+.|++++|. ...+.   ..++|+.|++++|.++.  +
T Consensus       267 L~Ls~N~L-~~Lp~-lp~~L~~L~Ls~N~--Lt~LP~~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N~L~~--L  337 (788)
T PRK15387        267 LSIFSNPL-THLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS--L  337 (788)
T ss_pred             eeccCCch-hhhhh-chhhcCEEECcCCc--cccccccccccceeECCCCccccCCC---CcccccccccccCcccc--c
Confidence            99988853 33322 13678999999885  44443345889999999987 32222   22468888898888865  3


Q ss_pred             hhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCCcccccCCCCceEEEEee
Q 009796          292 HPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNF  371 (525)
Q Consensus       292 ~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~  371 (525)
                      +.+   .++|+.|+|+++. ++.+.....+|+.|.+++ ..+..+....++|+.|.++++.+.......++|+.++++. 
T Consensus       338 P~l---p~~Lq~LdLS~N~-Ls~LP~lp~~L~~L~Ls~-N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~-  411 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQ-LASLPTLPSELYKLWAYN-NRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSG-  411 (788)
T ss_pred             ccc---ccccceEecCCCc-cCCCCCCCcccceehhhc-cccccCcccccccceEEecCCcccCCCCcccCCCEEEccC-
Confidence            332   2479999998854 444333346788887765 2344444444678889888876541111246788888874 


Q ss_pred             ecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796          372 GDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL  434 (525)
Q Consensus       372 ~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~  434 (525)
                      +.+..     ++.+   ..+|+.|+++.|.+.  . +|+      .+..+.+|+.|.|.+|.+
T Consensus       412 N~Lss-----IP~l---~~~L~~L~Ls~NqLt--~-LP~------sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        412 NRLTS-----LPML---PSGLLSLSVYRNQLT--R-LPE------SLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             CcCCC-----CCcc---hhhhhhhhhccCccc--c-cCh------HHhhccCCCeEECCCCCC
Confidence            22221     2222   346777888877665  2 552      455678999999999843

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.08  E-value=5.8e-12  Score=121.36  Aligned_cols=173  Identities=23%  Similarity=0.330  Sum_probs=110.3

Q ss_pred             CCccEEEecCCcCCC----CCCCCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecCCCceeecc----cCCC
Q 009796          161 KLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLRIS----EAHK  231 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~----~l~~  231 (525)
                      ..|+.|.++||.-.+    .....+||++++|.+.+|.. ++..+.++...|+.|++|++..|..++...+.    +|++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            467888888875333    33456788888888888866 77778888888888888888888776654432    6788


Q ss_pred             ccEEEEeeec----cccceEEEeCCCccEEEeccccccc----eeeccCCCCccEEEe-eCCCCChhhhhhhhcCCCCCc
Q 009796          232 LKSLILRFTY----QELESVEIAVPSLQQLELSFSRVPR----LLDVAECPHLRKLVL-FLPHFNDQEFHPLISKFPLLE  302 (525)
Q Consensus       232 L~~L~l~~c~----~~l~~~~~~~~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~L-~~~~~~~~~~~~ll~~~~~Le  302 (525)
                      |+.|+++.|.    .+++...-++..++.+.+.||....    ...-+.++.+.++++ ..+.+++..+..+..++..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            8888888887    2233333456667777666665111    111234455555665 334566666666666777777


Q ss_pred             EEEecCccchhH-----hhhcCcccceEccccccch
Q 009796          303 DLSIISLETLER-----IMISSNRLMHLEVYNCSGL  333 (525)
Q Consensus       303 ~L~L~~c~~l~~-----~~~~~~~L~~L~l~~c~~L  333 (525)
                      .|..++|..+++     ++..+++|+.|.+..|..+
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f  333 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQF  333 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchh
Confidence            777777765433     3444566666666666543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.5e-11  Score=113.57  Aligned_cols=203  Identities=19%  Similarity=0.236  Sum_probs=125.2

Q ss_pred             HHHHHcCCeEEEEEeecCCCCcccCCccccCC-CCccEEEecCCcCCC---CCCCCCCCcccEEEeceeeechHHHHHHH
Q 009796          129 ELAMENGVKELDFEVITDKNSVNALPQTIFSA-KLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLV  204 (525)
Q Consensus       129 ~~~~~~~l~~L~l~~~~~~~~~~~lp~~l~~~-~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ll  204 (525)
                      .....++|..+.+...  ....-.+-....-+ ..||+|+|++..++.   ......|.+|+.|+|.+++.+|. +..-+
T Consensus       154 ~~l~~rgV~v~Rlar~--~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~-I~~~i  230 (419)
T KOG2120|consen  154 GRLLSRGVIVFRLARS--FMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP-IVNTI  230 (419)
T ss_pred             HHHHhCCeEEEEcchh--hhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH-HHHHH
Confidence            3445567777776431  11111121111111 357888887766554   23345677788888887777554 44446


Q ss_pred             hCCcCccEEEEeecCCCceee----cccCCCccEEEEeeeccccceEEEeCCCccEEEeccccccceeecc-CCCCccEE
Q 009796          205 RECRVLEDLSFFYCFGLKRLR----ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVA-ECPHLRKL  279 (525)
Q Consensus       205 ~~c~~Le~L~L~~c~~l~~l~----i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~L~~L  279 (525)
                      +.-.+|+.|+|+.|.+++.-.    +.+|..|..|+++.|. .....                  ..+.+. --++|+.|
T Consensus       231 AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~-l~~~~------------------Vtv~V~hise~l~~L  291 (419)
T KOG2120|consen  231 AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF-LFTEK------------------VTVAVAHISETLTQL  291 (419)
T ss_pred             hccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh-ccchh------------------hhHHHhhhchhhhhh
Confidence            666777788887777766533    2355666666665554 11110                  111111 23578999


Q ss_pred             EeeCCC--CChhhhhhhhcCCCCCcEEEecCccchhH----hhhcCcccceEccccccch---hhhc-ccCCCcceEEEe
Q 009796          280 VLFLPH--FNDQEFHPLISKFPLLEDLSIISLETLER----IMISSNRLMHLEVYNCSGL---NRIN-VDAPNLVSFDFE  349 (525)
Q Consensus       280 ~L~~~~--~~~~~~~~ll~~~~~Le~L~L~~c~~l~~----~~~~~~~L~~L~l~~c~~L---~~l~-~~~p~L~~l~~~  349 (525)
                      +|++..  +....+.-+...||+|.+|+|++|.+++.    ....++.|++|+++.|..+   +.++ ...|.|.+|+..
T Consensus       292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEec
Confidence            997753  33334667788999999999999987654    2234789999999999876   2222 357999999999


Q ss_pred             cCCC
Q 009796          350 DNPI  353 (525)
Q Consensus       350 g~~~  353 (525)
                      |+.-
T Consensus       372 g~vs  375 (419)
T KOG2120|consen  372 GCVS  375 (419)
T ss_pred             cccC
Confidence            9864

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.93  E-value=6.6e-10  Score=110.38  Aligned_cols=63  Identities=21%  Similarity=0.052  Sum_probs=34.6

Q ss_pred             cCCCCccEEEecCCcCCC------CCCCCCCCcccEEEeceeeec--hHH---HHHHHhCCcCccEEEEeecCC
Q 009796          158 FSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYVN--DQM---VQSLVRECRVLEDLSFFYCFG  220 (525)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~--~~~---l~~ll~~c~~Le~L~L~~c~~  220 (525)
                      ....+|+.|++++|.+..      +......++|++|+++++.+.  ...   +...+..+++|++|++++|..
T Consensus        20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~   93 (319)
T cd00116          20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL   93 (319)
T ss_pred             HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence            344557777777776643      223345566677776666553  222   223344566666666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=7.8e-11  Score=114.28  Aligned_cols=152  Identities=19%  Similarity=0.148  Sum_probs=117.0

Q ss_pred             CCCCccEEEecCCcCCC-C--CCCCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecCCCce---eecccCCC
Q 009796          159 SAKLLTSLKLFGCKLEQ-P--SHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKR---LRISEAHK  231 (525)
Q Consensus       159 ~~~~L~~L~L~~~~l~~-~--~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~~l~~---l~i~~l~~  231 (525)
                      +.++|+...|.++.+.. +  .....|++++.|+|++|-+ .=..+.+++..+|+||.|+|+.|.....   .....++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            46788999999987776 2  3567899999999999988 5556788889999999999999865222   22224689


Q ss_pred             ccEEEEeeec---cccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEe
Q 009796          232 LKSLILRFTY---QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI  306 (525)
Q Consensus       232 L~~L~l~~c~---~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L  306 (525)
                      |+.|.+++|.   ..+..+...+|+|+.|++.++.  .........+..|+.|+|++|++-+.........+|+|+.|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            9999999997   2344555689999999999995  3233345567789999999998776444456788999999999


Q ss_pred             cCcc
Q 009796          307 ISLE  310 (525)
Q Consensus       307 ~~c~  310 (525)
                      +.|.
T Consensus       279 s~tg  282 (505)
T KOG3207|consen  279 SSTG  282 (505)
T ss_pred             cccC
Confidence            8864

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.92  E-value=5.8e-11  Score=124.87  Aligned_cols=302  Identities=18%  Similarity=0.164  Sum_probs=167.1

Q ss_pred             CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .++.+.+..    ...+..|.++.+..+|++|.|.++.+.. |..+..+.+|+.|++++|.+..  ++..+..+..++++
T Consensus        69 ~L~~ln~s~----n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~  142 (1081)
T KOG0618|consen   69 HLRQLNLSR----NYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEEL  142 (1081)
T ss_pred             HHhhcccch----hhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHH
Confidence            455555433    2334556666666777777777776665 6666777777777777776632  22233333333333


Q ss_pred             EEeec-----------------------------------------CCCceeecccCCCccEEEEeeeccccceEEEeCC
Q 009796          214 SFFYC-----------------------------------------FGLKRLRISEAHKLKSLILRFTYQELESVEIAVP  252 (525)
Q Consensus       214 ~L~~c-----------------------------------------~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~  252 (525)
                      ..++|                                         ... .+....+++|+.|....+  .+..+.+.-|
T Consensus       143 ~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~~dls~~~~l~~l~c~rn--~ls~l~~~g~  219 (1081)
T KOG0618|consen  143 AASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-VLDLSNLANLEVLHCERN--QLSELEISGP  219 (1081)
T ss_pred             hhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh-hhhhhhccchhhhhhhhc--ccceEEecCc
Confidence            33333                                         211 222233444444444333  4566666778


Q ss_pred             CccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhh---cCcccceEcccc
Q 009796          253 SLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMI---SSNRLMHLEVYN  329 (525)
Q Consensus       253 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~---~~~~L~~L~l~~  329 (525)
                      +|+.|+..+|.......-..-.+|+.++++.+.++.  ++.++..|.+|+.|.+..... ..+..   ..+.|+.|.+..
T Consensus       220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~  296 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAY  296 (1081)
T ss_pred             chheeeeccCcceeeccccccccceeeecchhhhhc--chHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhh
Confidence            888888888772222222334578999999988887  568888999999998887432 22111   123455554444


Q ss_pred             ccchhhh---cccCCCcceEEEecCCCC---cccc--------------------------cCCCCceEEEEeeecCChh
Q 009796          330 CSGLNRI---NVDAPNLVSFDFEDNPIP---IVST--------------------------NAPCPLNVLFSNFGDIDTH  377 (525)
Q Consensus       330 c~~L~~l---~~~~p~L~~l~~~g~~~~---~~~~--------------------------~~~~L~~l~l~~~~~~~~~  377 (525)
                      +. ++++   ......|++|++..+.++   ..+.                          ..+.|+++.+-     ++.
T Consensus       297 ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla-----nN~  370 (1081)
T KOG0618|consen  297 NE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA-----NNH  370 (1081)
T ss_pred             hh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh-----cCc
Confidence            32 2111   112234455555444432   0000                          11222222222     112


Q ss_pred             ccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhcccc
Q 009796          378 WYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPK  457 (525)
Q Consensus       378 ~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~~l~  457 (525)
                      +.......+.++.+||.|+|++|....   +|.     ..+.++..|++|.|++|         ....+.+-+..+.+|+
T Consensus       371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~---fpa-----s~~~kle~LeeL~LSGN---------kL~~Lp~tva~~~~L~  433 (1081)
T KOG0618|consen  371 LTDSCFPVLVNFKHLKVLHLSYNRLNS---FPA-----SKLRKLEELEELNLSGN---------KLTTLPDTVANLGRLH  433 (1081)
T ss_pred             ccccchhhhccccceeeeeeccccccc---CCH-----HHHhchHHhHHHhcccc---------hhhhhhHHHHhhhhhH
Confidence            222334557888999999999887653   331     14567889999999998         3555555555566777


Q ss_pred             ceeecCCCCCchhhHH
Q 009796          458 NLCLSPENWRYRPFVM  473 (525)
Q Consensus       458 ~l~l~~~~~~~~~~~~  473 (525)
                      ||..++-  +-..|+|
T Consensus       434 tL~ahsN--~l~~fPe  447 (1081)
T KOG0618|consen  434 TLRAHSN--QLLSFPE  447 (1081)
T ss_pred             HHhhcCC--ceeechh
Confidence            7777554  3344443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.86  E-value=3.6e-09  Score=114.73  Aligned_cols=174  Identities=15%  Similarity=0.115  Sum_probs=95.6

Q ss_pred             CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      +..+|++..    .....+|..+.  ++|+.|+|++|.+.. |...  +++|++|++++|.++.  ++..+  .++|+.|
T Consensus       179 ~~~~L~L~~----~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L  246 (754)
T PRK15370        179 NKTELRLKI----LGLTTIPACIP--EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS--IPATL--PDTIQEM  246 (754)
T ss_pred             CceEEEeCC----CCcCcCCcccc--cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc--CChhh--hccccEE
Confidence            455666544    23345565443  468888888888776 4332  3588888888887631  22222  2468888


Q ss_pred             EEeecCCCceeecccCCCccEEEEeeeccccceEEEe-CCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhh
Q 009796          214 SFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIA-VPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF  291 (525)
Q Consensus       214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~-~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~  291 (525)
                      +|++|.. ..++..-..+|+.|++++|.  +..+.-. .++|+.|++++|. ...+..+  .++|+.|++++|.++.  +
T Consensus       247 ~Ls~N~L-~~LP~~l~s~L~~L~Ls~N~--L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~--L  319 (754)
T PRK15370        247 ELSINRI-TELPERLPSALQSLDLFHNK--ISCLPENLPEELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTA--L  319 (754)
T ss_pred             ECcCCcc-CcCChhHhCCCCEEECcCCc--cCccccccCCCCcEEECCCCccccCcccc--hhhHHHHHhcCCcccc--C
Confidence            8887753 23322222467888887664  2222211 2477777777776 2222222  1357777777776654  2


Q ss_pred             hhhhcCCCCCcEEEecCccchhHhhh-cCcccceEccccc
Q 009796          292 HPLISKFPLLEDLSIISLETLERIMI-SSNRLMHLEVYNC  330 (525)
Q Consensus       292 ~~ll~~~~~Le~L~L~~c~~l~~~~~-~~~~L~~L~l~~c  330 (525)
                      +..  ..++|+.|++++|. ++.+.. .+++|+.|+++++
T Consensus       320 P~~--l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N  356 (754)
T PRK15370        320 PET--LPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKN  356 (754)
T ss_pred             Ccc--ccccceeccccCCc-cccCChhhcCcccEEECCCC
Confidence            211  12567777776654 222211 1245555555553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.86  E-value=3.1e-09  Score=114.70  Aligned_cols=250  Identities=16%  Similarity=0.073  Sum_probs=162.9

Q ss_pred             CCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEee
Q 009796          161 KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRF  239 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~  239 (525)
                      ..-..|+++.+.+.. |..+.  ++|+.|++.+|.++.  ++.   ..++|++|++++|. ++.++. ..++|+.|++.+
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~--LP~---lp~~Lk~LdLs~N~-LtsLP~-lp~sL~~L~Ls~  271 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQ-LTSLPV-LPPGLLELSIFS  271 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC--CCC---CCCCCcEEEecCCc-cCcccC-cccccceeeccC
Confidence            456789999998887 55443  589999999998742  332   36899999999984 444432 247899999998


Q ss_pred             eccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhc
Q 009796          240 TYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMIS  318 (525)
Q Consensus       240 c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~  318 (525)
                      |.  +..+....++|+.|++++|. ...+.   ..++|+.|++++|.++.  ++.+   ..+|+.|.++++. ++.+...
T Consensus       272 N~--L~~Lp~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~--Lp~l---p~~L~~L~Ls~N~-L~~LP~l  340 (788)
T PRK15387        272 NP--LTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS--LPAL---PSELCKLWAYNNQ-LTSLPTL  340 (788)
T ss_pred             Cc--hhhhhhchhhcCEEECcCCccccccc---cccccceeECCCCcccc--CCCC---cccccccccccCc-ccccccc
Confidence            85  33332234679999999987 33322   34789999999998876  3332   3468888888754 3333333


Q ss_pred             CcccceEccccccchhhhcccCCCcceEEEecCCCCcccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEE
Q 009796          319 SNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLS  398 (525)
Q Consensus       319 ~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~  398 (525)
                      ..+|+.|++++ .++..+....++|+.|.+.++.+.......++|+.++++. +.+.        .+....++|+.|+++
T Consensus       341 p~~Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~-N~Lt--------~LP~l~s~L~~LdLS  410 (788)
T PRK15387        341 PSGLQELSVSD-NQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSG-NRLT--------SLPVLPSELKELMVS  410 (788)
T ss_pred             ccccceEecCC-CccCCCCCCCcccceehhhccccccCcccccccceEEecC-Cccc--------CCCCcccCCCEEEcc
Confidence            35799999987 3455554445677888777765431011235788888874 2222        122234688999999


Q ss_pred             EEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceee
Q 009796          399 LNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCL  461 (525)
Q Consensus       399 ~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~~l~~l~l  461 (525)
                      .|.+..   +|       ..  +.+|+.|.+..|.+         ..+...+...+.++.|.+
T Consensus       411 ~N~Lss---IP-------~l--~~~L~~L~Ls~NqL---------t~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        411 GNRLTS---LP-------ML--PSGLLSLSVYRNQL---------TRLPESLIHLSSETTVNL  452 (788)
T ss_pred             CCcCCC---CC-------cc--hhhhhhhhhccCcc---------cccChHHhhccCCCeEEC
Confidence            876542   44       11  34678888888733         233444445567888887

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.80  E-value=9.9e-11  Score=99.72  Aligned_cols=149  Identities=20%  Similarity=0.169  Sum_probs=112.6

Q ss_pred             cccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCC-CceeecccCCCcc
Q 009796          156 TIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG-LKRLRISEAHKLK  233 (525)
Q Consensus       156 ~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~-l~~l~i~~l~~L~  233 (525)
                      .++.+.+.+.|.|++|+++. |+.++.+.+|+.|++++|++.+  ++.-++..|.|+.|++.-+.. .-.-...++|.|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le  105 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE  105 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence            46677888889999998887 8888889999999999988743  566678889999998876643 1122345678888


Q ss_pred             EEEEeeec---cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecC
Q 009796          234 SLILRFTY---QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIIS  308 (525)
Q Consensus       234 ~L~l~~c~---~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~  308 (525)
                      .|++.++.   ..++.-.+.+..|+.|+++++. ...+..++.+++|+.|.+..+.+-.  ++.-++.+..|+.|++.+
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhccc
Confidence            88888876   3344444567778888898888 5667788999999999998777654  555566777788888877

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.78  E-value=3.2e-11  Score=115.66  Aligned_cols=85  Identities=15%  Similarity=0.022  Sum_probs=56.5

Q ss_pred             CCCcceEEEecCCC---CcccccCCCCceEEEEeeecCChh------------------c-cccHHHHHHhccccceEEE
Q 009796          340 APNLVSFDFEDNPI---PIVSTNAPCPLNVLFSNFGDIDTH------------------W-YLNLMEFIGAFNQIGELHL  397 (525)
Q Consensus       340 ~p~L~~l~~~g~~~---~~~~~~~~~L~~l~l~~~~~~~~~------------------~-~~~l~~~l~~l~~L~~L~L  397 (525)
                      .++|..|+++.+..   |..++.+-.|+.+++++ +.+...                  . ...-..-+.++.+|++|++
T Consensus       434 l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL  512 (565)
T KOG0472|consen  434 LQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL  512 (565)
T ss_pred             hhcceeeecccchhhhcchhhhhhhhhheecccc-cccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence            46788888887653   55566677799999984 211100                  0 0001122667899999999


Q ss_pred             EEEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796          398 SLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL  434 (525)
Q Consensus       398 ~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~  434 (525)
                      ..|....   +|      |.++.+.+|+||.|.+|+.
T Consensus       513 ~nNdlq~---IP------p~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  513 QNNDLQQ---IP------PILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             CCCchhh---CC------hhhccccceeEEEecCCcc
Confidence            8666543   56      4688899999999999943

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.78  E-value=5.5e-09  Score=71.48  Aligned_cols=35  Identities=37%  Similarity=0.821  Sum_probs=31.2

Q ss_pred             CCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhhh
Q 009796           10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQ   44 (525)
Q Consensus        10 is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw   44 (525)
                      |+.||+||+.+||++|+.+|+++++.|||+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999874

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.64  E-value=5.1e-08  Score=105.83  Aligned_cols=242  Identities=15%  Similarity=0.093  Sum_probs=151.6

Q ss_pred             CCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEee
Q 009796          161 KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRF  239 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~  239 (525)
                      .+...|+++++.++. |...  .++|+.|+|++|.++.  ++..+  +++|++|++++|. +..++..-.++|+.|++++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~  250 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACI--PEQITTLILDNNELKS--LPENL--QGNIKTLYANSNQ-LTSIPATLPDTIQEMELSI  250 (754)
T ss_pred             cCceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCc--CChhh--ccCCCEEECCCCc-cccCChhhhccccEEECcC
Confidence            467889999988876 4333  3589999999998842  33322  3689999999885 4444432235899999999


Q ss_pred             eccccceEEE-eCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhh
Q 009796          240 TYQELESVEI-AVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMI  317 (525)
Q Consensus       240 c~~~l~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~  317 (525)
                      |.  +..+.. -..+|+.|+++++. ...+..+  .++|+.|++++|.++.  ++..+  .++|+.|+++++.. +.+..
T Consensus       251 N~--L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~Ls~N~L-t~LP~  321 (754)
T PRK15370        251 NR--ITELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRT--LPAHL--PSGITHLNVQSNSL-TALPE  321 (754)
T ss_pred             Cc--cCcCChhHhCCCCEEECcCCccCcccccc--CCCCcEEECCCCcccc--Ccccc--hhhHHHHHhcCCcc-ccCCc
Confidence            86  333321 13579999999887 3333333  3589999999998875  22212  24688888887642 22221


Q ss_pred             -cCcccceEccccccchhhhccc-CCCcceEEEecCCCC-cccccCCCCceEEEEeeecCChhccccHHHHHHhccccce
Q 009796          318 -SSNRLMHLEVYNCSGLNRINVD-APNLVSFDFEDNPIP-IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGE  394 (525)
Q Consensus       318 -~~~~L~~L~l~~c~~L~~l~~~-~p~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~  394 (525)
                       .+++|+.|.+.++. +..+... .++|+.|.++++.+. +...-.++|+.|+++. +.+.    .....+.   .+|+.
T Consensus       322 ~l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~-N~Lt----~LP~~l~---~sL~~  392 (754)
T PRK15370        322 TLPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSR-NALT----NLPENLP---AALQI  392 (754)
T ss_pred             cccccceeccccCCc-cccCChhhcCcccEEECCCCCCCcCChhhcCCcCEEECCC-CcCC----CCCHhHH---HHHHH
Confidence             23678889888764 4333322 258889988887653 1111146788888874 2222    1112222   35778


Q ss_pred             EEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796          395 LHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (525)
Q Consensus       395 L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~  432 (525)
                      |++++|....   +|+.+..  .....+++..|.|..|
T Consensus       393 LdLs~N~L~~---LP~sl~~--~~~~~~~l~~L~L~~N  425 (754)
T PRK15370        393 MQASRNNLVR---LPESLPH--FRGEGPQPTRIIVEYN  425 (754)
T ss_pred             HhhccCCccc---CchhHHH--HhhcCCCccEEEeeCC
Confidence            8888776652   4422111  1223477888999888

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.61  E-value=8.3e-09  Score=97.81  Aligned_cols=237  Identities=18%  Similarity=0.219  Sum_probs=120.0

Q ss_pred             CCcccceEEEEEeeccccCCchhHHHHHHHHHHc--CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCC
Q 009796          101 LGFPMQKLRISVSLLEVKESSPLFDKWVELAMEN--GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSH  178 (525)
Q Consensus       101 ~~~~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~--~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~  178 (525)
                      +...+.++++.-.     ..+....+|+....++  .+++.+++..........+|..+..+               ...
T Consensus        28 ~~~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l---------------~~a   87 (382)
T KOG1909|consen   28 PMDSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKML---------------SKA   87 (382)
T ss_pred             ccCceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHH---------------HHH
Confidence            3456777766533     2356778888887764  56666654422222223333322110               123


Q ss_pred             CCCCCcccEEEeceeee---chHHHHHHHhCCcCccEEEEeecCCCc-----------eee----cccCCCccEEEEeee
Q 009796          179 CANLQSLKKLSLDEVYV---NDQMVQSLVRECRVLEDLSFFYCFGLK-----------RLR----ISEAHKLKSLILRFT  240 (525)
Q Consensus       179 ~~~l~~L~~L~L~~~~~---~~~~l~~ll~~c~~Le~L~L~~c~~l~-----------~l~----i~~l~~L~~L~l~~c  240 (525)
                      ...+|+|++|+||.|.+   ....+..++++|..|++|.|.+|..-.           .+.    +.+-+.|+.+....|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            34567777888888777   345567788999999999998885411           111    112255666666555


Q ss_pred             c-cc--cceE---EEeCCCccEEEecccc-cc-----ceeeccCCCCccEEEeeCCCCChh---hhhhhhcCCCCCcEEE
Q 009796          241 Y-QE--LESV---EIAVPSLQQLELSFSR-VP-----RLLDVAECPHLRKLVLFLPHFNDQ---EFHPLISKFPLLEDLS  305 (525)
Q Consensus       241 ~-~~--l~~~---~~~~~~L~~L~l~~~~-~~-----~~~~~~~l~~L~~L~L~~~~~~~~---~~~~ll~~~~~Le~L~  305 (525)
                      . ..  -..+   .-..|.|+.+.+..+. .+     ....+..|++|+.|+|..|.++..   .+...++.+++|+.|.
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            4 11  1111   0123555555555444 11     111344455555555555544432   2233344445555555


Q ss_pred             ecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCC--------cccccCCCCceEEEEe
Q 009796          306 IISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP--------IVSTNAPCPLNVLFSN  370 (525)
Q Consensus       306 L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~--------~~~~~~~~L~~l~l~~  370 (525)
                      +++|..-..=.+             .-...+...+|+|+.+++.|+.+.        .+....+.|++|+++.
T Consensus       248 l~dcll~~~Ga~-------------a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  248 LGDCLLENEGAI-------------AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG  307 (382)
T ss_pred             ccccccccccHH-------------HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence            555421000000             001334445677777776666553        2233467778888874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.58  E-value=2.5e-09  Score=112.85  Aligned_cols=254  Identities=21%  Similarity=0.182  Sum_probs=112.2

Q ss_pred             ccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCC-CceeecccCCCccEEEEeee
Q 009796          163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG-LKRLRISEAHKLKSLILRFT  240 (525)
Q Consensus       163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~-l~~l~i~~l~~L~~L~l~~c  240 (525)
                      |++|++++|.+.. |..+..+++|+.|+++.|.+.  .++.-+++..+|++|+|.++.. .....+..+.+|+.|+++++
T Consensus        47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~--~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N  124 (1081)
T KOG0618|consen   47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR--SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN  124 (1081)
T ss_pred             eEEeeccccccccCCchhhhHHHHhhcccchhhHh--hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence            5555555555544 444444555555555555441  1223344455555555554432 11122333455555555555


Q ss_pred             c-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhcC
Q 009796          241 Y-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISS  319 (525)
Q Consensus       241 ~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~  319 (525)
                      . ...+.+...+..++.+..+++.  ....++... ++.+++..+.+.+..... +.++.+  .|+|............+
T Consensus       125 ~f~~~Pl~i~~lt~~~~~~~s~N~--~~~~lg~~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~~~dls~~  198 (1081)
T KOG0618|consen  125 HFGPIPLVIEVLTAEEELAASNNE--KIQRLGQTS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEMEVLDLSNL  198 (1081)
T ss_pred             ccCCCchhHHhhhHHHHHhhhcch--hhhhhcccc-chhhhhhhhhcccchhcc-hhhhhe--eeecccchhhhhhhhhc
Confidence            4 1222222234444444444442  001112212 455555554444331111 111111  35555433321111122


Q ss_pred             cccceEccccccchhhhcccCCCcceEEEecCCCCcccc--cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEE
Q 009796          320 NRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVST--NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHL  397 (525)
Q Consensus       320 ~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L  397 (525)
                      ++|+.|... +..+..+.+..|+|+.+....+.......  ....|+.+++++      .....+++++..+.+|+.+.+
T Consensus       199 ~~l~~l~c~-rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~------n~l~~lp~wi~~~~nle~l~~  271 (1081)
T KOG0618|consen  199 ANLEVLHCE-RNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISH------NNLSNLPEWIGACANLEALNA  271 (1081)
T ss_pred             cchhhhhhh-hcccceEEecCcchheeeeccCcceeeccccccccceeeecch------hhhhcchHHHHhcccceEecc
Confidence            333333322 23444555555666666555554331111  133456666653      112234466666777776666


Q ss_pred             EEEeeeeeeeeccc----------------cccC-CCCCCCcccceEEEEEeee
Q 009796          398 SLNYKQVLFNIDEF----------------RSCH-PSLPLQVESLSLFMESFSL  434 (525)
Q Consensus       398 ~~~~~~~~~~lp~~----------------~~~~-~~~~~~~~L~~L~L~~~~~  434 (525)
                      .+|....   +|..                +... +....+..|++|.|+.|.+
T Consensus       272 n~N~l~~---lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L  322 (1081)
T KOG0618|consen  272 NHNRLVA---LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL  322 (1081)
T ss_pred             cchhHHh---hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence            6655422   1110                0111 2344588899999997743

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.56  E-value=3.3e-08  Score=93.82  Aligned_cols=229  Identities=19%  Similarity=0.205  Sum_probs=147.4

Q ss_pred             CCCCccEEEecCCcCCC------CCCCCCCCcccEEEeceeee---chH------HHHHHHhCCcCccEEEEeecCC-Cc
Q 009796          159 SAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYV---NDQ------MVQSLVRECRVLEDLSFFYCFG-LK  222 (525)
Q Consensus       159 ~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~---~~~------~l~~ll~~c~~Le~L~L~~c~~-l~  222 (525)
                      ...+++.|+|++|.+..      .....+-++|+.-+++..--   .+.      .+...+..||.|++|+|+.|-. ..
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            45678999999998765      23445667888888886532   111      2334467899999999999954 22


Q ss_pred             ee-----ecccCCCccEEEEeeeccc------c---------ceEEEeCCCccEEEecccc-c-----cceeeccCCCCc
Q 009796          223 RL-----RISEAHKLKSLILRFTYQE------L---------ESVEIAVPSLQQLELSFSR-V-----PRLLDVAECPHL  276 (525)
Q Consensus       223 ~l-----~i~~l~~L~~L~l~~c~~~------l---------~~~~~~~~~L~~L~l~~~~-~-----~~~~~~~~l~~L  276 (525)
                      .+     -+.+|..|+.|.+.+|.-+      +         ....-..|.|+.+....|. .     .....+...+.|
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence            22     1456899999999999610      0         0111246889999998887 1     122356778999


Q ss_pred             cEEEeeCCCCChhh---hhhhhcCCCCCcEEEecCccc-------hhHhhhcCcccceEccccccchhhhcccCCCcceE
Q 009796          277 RKLVLFLPHFNDQE---FHPLISKFPLLEDLSIISLET-------LERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSF  346 (525)
Q Consensus       277 ~~L~L~~~~~~~~~---~~~ll~~~~~Le~L~L~~c~~-------l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l  346 (525)
                      +.+.+..|.|....   +..-+..|++|+.|+|....-       +.......++|+.|++.+|. ++.           
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~-----------  255 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LEN-----------  255 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-ccc-----------
Confidence            99999888876543   344577899999999987532       22222234567777776663 100           


Q ss_pred             EEecCCC-Cccc-ccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEee
Q 009796          347 DFEDNPI-PIVS-TNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYK  402 (525)
Q Consensus       347 ~~~g~~~-~~~~-~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~  402 (525)
                        .|..- -..+ ...|+|+.+.+.+ +.+.......+..-+...+.|+.|.|+.|..
T Consensus       256 --~Ga~a~~~al~~~~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  256 --EGAIAFVDALKESAPSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             --ccHHHHHHHHhccCCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence              01000 0011 1268899999875 4444443334444566689999999998877

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.49  E-value=3.6e-08  Score=87.43  Aligned_cols=125  Identities=22%  Similarity=0.230  Sum_probs=32.7

Q ss_pred             CCCccEEEecCCcCCCCCCCC-CCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEe
Q 009796          160 AKLLTSLKLFGCKLEQPSHCA-NLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR  238 (525)
Q Consensus       160 ~~~L~~L~L~~~~l~~~~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~  238 (525)
                      +..+++|+|.+|.++.....+ .+.+|+.|+|++|.+..  +.. +..++.|++|++++|...                 
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~I~-----------------   77 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNRIS-----------------   77 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS--------------------
T ss_pred             ccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCCCC-----------------
Confidence            445666666666665522222 45666666666665521  111 223445555555444321                 


Q ss_pred             eeccccce-EEEeCCCccEEEecccc---ccceeeccCCCCccEEEeeCCCCChhh--hhhhhcCCCCCcEEEecC
Q 009796          239 FTYQELES-VEIAVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQE--FHPLISKFPLLEDLSIIS  308 (525)
Q Consensus       239 ~c~~~l~~-~~~~~~~L~~L~l~~~~---~~~~~~~~~l~~L~~L~L~~~~~~~~~--~~~ll~~~~~Le~L~L~~  308 (525)
                          .+.. +.-.+|+|++|+++++.   ......++.+++|+.|++.+|.++...  -..++..+|+|+.|+-..
T Consensus        78 ----~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   78 ----SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             ----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             ----ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence                1110 00124555555555544   111223455666666666666655421  123345566666655443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.43  E-value=3e-10  Score=109.04  Aligned_cols=239  Identities=19%  Similarity=0.122  Sum_probs=148.8

Q ss_pred             CCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce-ee
Q 009796          148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR-LR  225 (525)
Q Consensus       148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~-l~  225 (525)
                      ..-..+|+++.....++.|+.+++++.. |...+.+++|+.|+.+++.+..  +..-++.|..|++|+..+|...+- -.
T Consensus        78 n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~e--l~~~i~~~~~l~dl~~~~N~i~slp~~  155 (565)
T KOG0472|consen   78 NKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKE--LPDSIGRLLDLEDLDATNNQISSLPED  155 (565)
T ss_pred             chhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceee--cCchHHHHhhhhhhhccccccccCchH
Confidence            3456788888888888888888888777 7788888888888888887632  333456677888888877754221 22


Q ss_pred             cccCCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcE
Q 009796          226 ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLED  303 (525)
Q Consensus       226 i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~  303 (525)
                      +.+|.+|..+++.++. ..+..-.++...|++|+...+. ...|..++.+.+|..|+|..+.+..  ++ -+.+|..|.+
T Consensus       156 ~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~--lP-ef~gcs~L~E  232 (565)
T KOG0472|consen  156 MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF--LP-EFPGCSLLKE  232 (565)
T ss_pred             HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc--CC-CCCccHHHHH
Confidence            3456677777777775 2333333456778888877777 6677778888888888887777654  33 3455566665


Q ss_pred             EEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCCcccccCCCCceEEEEeeecCChhccccHH
Q 009796          304 LSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLM  383 (525)
Q Consensus       304 L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~  383 (525)
                      |+++.           .+++.|.-..|+                           +++++..+++.. +.     ....+
T Consensus       233 lh~g~-----------N~i~~lpae~~~---------------------------~L~~l~vLDLRd-Nk-----lke~P  268 (565)
T KOG0472|consen  233 LHVGE-----------NQIEMLPAEHLK---------------------------HLNSLLVLDLRD-NK-----LKEVP  268 (565)
T ss_pred             HHhcc-----------cHHHhhHHHHhc---------------------------ccccceeeeccc-cc-----cccCc
Confidence            55554           122221111111                           244455555542 11     11122


Q ss_pred             HHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhc
Q 009796          384 EFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIF  454 (525)
Q Consensus       384 ~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~  454 (525)
                      .-+.-+.+|++|+++.|.+..   +|      +.++.+ .|+.|.+.+|    |     ..-+...+.++.
T Consensus       269 de~clLrsL~rLDlSNN~is~---Lp------~sLgnl-hL~~L~leGN----P-----lrTiRr~ii~~g  320 (565)
T KOG0472|consen  269 DEICLLRSLERLDLSNNDISS---LP------YSLGNL-HLKFLALEGN----P-----LRTIRREIISKG  320 (565)
T ss_pred             hHHHHhhhhhhhcccCCcccc---CC------cccccc-eeeehhhcCC----c-----hHHHHHHHHccc
Confidence            334456777888888666554   44      366777 8888888888    5     555555555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.42  E-value=3.9e-08  Score=94.66  Aligned_cols=256  Identities=13%  Similarity=0.049  Sum_probs=148.5

Q ss_pred             CccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee---cccCCCccEEE
Q 009796          162 LLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKLKSLI  236 (525)
Q Consensus       162 ~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~---i~~l~~L~~L~  236 (525)
                      .-+.++|..|.++.  +..+..+++||+|+|++|.+..-+ +..+.+.+.|-+|.+.++..++.++   ..++.+|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            35788888888887  456788999999999999873321 3446677888888888876666665   34567777777


Q ss_pred             Eeeec--cccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChh----hhhh-------hhcCCCCC
Q 009796          237 LRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQ----EFHP-------LISKFPLL  301 (525)
Q Consensus       237 l~~c~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~----~~~~-------ll~~~~~L  301 (525)
                      +.-|.  ...+...-.+++|..|.+.++.  ......+..+.+++.+++..+.+-.+    +...       ..+++...
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            77664  1122222357888888888877  22333677788888888866653221    0000       01111111


Q ss_pred             cEEEecCccchhHhh--hcCcccceE---ccccccch----hhhcccCCCcceEEEecCCCC----cccccCCCCceEEE
Q 009796          302 EDLSIISLETLERIM--ISSNRLMHL---EVYNCSGL----NRINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLF  368 (525)
Q Consensus       302 e~L~L~~c~~l~~~~--~~~~~L~~L---~l~~c~~L----~~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l  368 (525)
                      ....+..-. +..+.  .....++.+   --..|.-.    .......|+|+.++++++.+.    .++.....++++.+
T Consensus       227 ~p~rl~~~R-i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  227 SPYRLYYKR-INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             chHHHHHHH-hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence            111111100 00000  000011111   00111100    111245688888888888764    35556788888888


Q ss_pred             EeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796          369 SNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (525)
Q Consensus       369 ~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~  432 (525)
                      .. +.+..    .-...++++.+|++|+|+.|.++...  |     . .+.....|..|.|-.|
T Consensus       306 ~~-N~l~~----v~~~~f~~ls~L~tL~L~~N~it~~~--~-----~-aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  306 TR-NKLEF----VSSGMFQGLSGLKTLSLYDNQITTVA--P-----G-AFQTLFSLSTLNLLSN  356 (498)
T ss_pred             Cc-chHHH----HHHHhhhccccceeeeecCCeeEEEe--c-----c-cccccceeeeeehccC
Confidence            63 22221    12345788999999999988776542  3     2 4666788888888887

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.32  E-value=2e-07  Score=64.03  Aligned_cols=37  Identities=43%  Similarity=0.862  Sum_probs=31.1

Q ss_pred             CCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhhhcc
Q 009796           10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTS   46 (525)
Q Consensus        10 is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw~~   46 (525)
                      |++||+|++.+||++|+.+|+++++.|||+|+++..+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5689999999999999999999999999999987554

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=2.4e-07  Score=90.49  Aligned_cols=59  Identities=24%  Similarity=0.153  Sum_probs=27.0

Q ss_pred             CCCccEEEecCCcCCC---CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeec
Q 009796          160 AKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYC  218 (525)
Q Consensus       160 ~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c  218 (525)
                      +++|+.|+|+.|++..   ......+++|+.|.|+.|.++-.++..++..||.|+.|.|..|
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            3444444444444332   1111234445555555555444444555555555555555544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.27  E-value=9e-09  Score=87.91  Aligned_cols=138  Identities=20%  Similarity=0.174  Sum_probs=100.0

Q ss_pred             CcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--
Q 009796          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--  225 (525)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~--  225 (525)
                      ....+|+.+..+.+|+.|++.+|.+.. |..++.++.|+.|++.-|+..  .++.=++++|.||.|+|+++..-+..-  
T Consensus        44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~e~~lpg  121 (264)
T KOG0617|consen   44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLNENSLPG  121 (264)
T ss_pred             ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccccccCCc
Confidence            345567777788888888888888877 777888888888888877652  234446778888888888875422211  


Q ss_pred             -cccCCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCCh
Q 009796          226 -ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND  288 (525)
Q Consensus       226 -i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~  288 (525)
                       ...+..|+-|.++.+. ..++.-...+.+|+.|.+.++. ...+..++.+..|+.|++.++.++-
T Consensus       122 nff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  122 NFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             chhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee
Confidence             1124677778887775 2233323367889999999988 7778889999999999999998764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.23  E-value=2.2e-07  Score=82.39  Aligned_cols=101  Identities=20%  Similarity=0.227  Sum_probs=35.0

Q ss_pred             CCeEEEEEeecCCCCcccCCcccc-CCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          135 GVKELDFEVITDKNSVNALPQTIF-SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       135 ~l~~L~l~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      ++++|++..  ..  -..+ ..+. .+.+|+.|+|++|.+..-..+..+++|++|++++|.++.-. ..+..+||+|++|
T Consensus        20 ~~~~L~L~~--n~--I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L   93 (175)
T PF14580_consen   20 KLRELNLRG--NQ--ISTI-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQEL   93 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EE
T ss_pred             ccccccccc--cc--cccc-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEE
Confidence            578888876  11  1112 2333 46899999999999988667788999999999999984311 2233578999999


Q ss_pred             EEeecCC--Ccee-ecccCCCccEEEEeeec
Q 009796          214 SFFYCFG--LKRL-RISEAHKLKSLILRFTY  241 (525)
Q Consensus       214 ~L~~c~~--l~~l-~i~~l~~L~~L~l~~c~  241 (525)
                      ++++|..  +..+ .+..+++|+.|++.+|.
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence            9998853  2222 23345666666666554

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.21  E-value=1.3e-06  Score=57.69  Aligned_cols=34  Identities=41%  Similarity=0.683  Sum_probs=31.6

Q ss_pred             CCHHHHHHHhcCCChHHHHHHhhhchhhhhhhcc
Q 009796           13 LPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTS   46 (525)
Q Consensus        13 LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw~~   46 (525)
                      ||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.19  E-value=3.9e-07  Score=84.83  Aligned_cols=127  Identities=18%  Similarity=0.167  Sum_probs=79.9

Q ss_pred             CCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeec-cccceEEEeCCCccEEEec
Q 009796          182 LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELS  260 (525)
Q Consensus       182 l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~  260 (525)
                      +..|+.|+|++|.++.  +...+.-.|.++.|++++|....--.+..+++|+.|++++|. ..+..+...+-|.+.|.++
T Consensus       283 Wq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             Hhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            4567777777776632  333344467777777777765433334446777777777775 3444444556677777777


Q ss_pred             cccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796          261 FSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       261 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      ++.......++.+-+|..|++.+|+|..-.-..-++++|.||.|.|.+.+
T Consensus       361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            77633344556666777777777777653333446777777777777654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.02  E-value=1.3e-06  Score=94.09  Aligned_cols=148  Identities=19%  Similarity=0.182  Sum_probs=103.2

Q ss_pred             CCccEEEecCCcCCC---C-CCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEE
Q 009796          161 KLLTSLKLFGCKLEQ---P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI  236 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~---~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~  236 (525)
                      .+|++|+++|...-.   + ..+.-||+|++|.+.+..+....+..+..++|+|..|+++++..-.-..++.+++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            578888888753322   1 234558999999999988855568888899999999999987643334566778888887


Q ss_pred             Eeeec-cccceE--EEeCCCccEEEecccc-ccce-------eeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEE
Q 009796          237 LRFTY-QELESV--EIAVPSLQQLELSFSR-VPRL-------LDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLS  305 (525)
Q Consensus       237 l~~c~-~~l~~~--~~~~~~L~~L~l~~~~-~~~~-------~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~  305 (525)
                      +.+-. ..-..+  -+++.+|+.|+++... ...+       ..-..+|+|+.|+.++..++++.+..++..-|+|+.+.
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            76543 111111  1367888888888776 1111       12345889999999988888887888777777777766


Q ss_pred             ecC
Q 009796          306 IIS  308 (525)
Q Consensus       306 L~~  308 (525)
                      +-+
T Consensus       282 ~~~  284 (699)
T KOG3665|consen  282 ALD  284 (699)
T ss_pred             hhh
Confidence            554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.93  E-value=3e-06  Score=89.18  Aligned_cols=190  Identities=24%  Similarity=0.276  Sum_probs=104.9

Q ss_pred             ccccCCCCccEEEecCC-cCCC------CCCCCCCCcccEEEeceee-echHHHHHHHhCCcCccEEEEeecCCCceeec
Q 009796          155 QTIFSAKLLTSLKLFGC-KLEQ------PSHCANLQSLKKLSLDEVY-VNDQMVQSLVRECRVLEDLSFFYCFGLKRLRI  226 (525)
Q Consensus       155 ~~l~~~~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i  226 (525)
                      .....++.|+.|++++| ....      ......+++|+.|+++++. +++..+..+...||+|++|.+.+|..++...+
T Consensus       208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl  287 (482)
T KOG1947|consen  208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL  287 (482)
T ss_pred             HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence            34456788888888873 2211      2344567888888888887 57777888777888888888888876544322


Q ss_pred             ----ccCCCccEEEEeeec----cccceEEEeCCCccEEEeccccc-------------------cceeeccCCCCccEE
Q 009796          227 ----SEAHKLKSLILRFTY----QELESVEIAVPSLQQLELSFSRV-------------------PRLLDVAECPHLRKL  279 (525)
Q Consensus       227 ----~~l~~L~~L~l~~c~----~~l~~~~~~~~~L~~L~l~~~~~-------------------~~~~~~~~l~~L~~L  279 (525)
                          ..|++|++|++.+|.    ..+..+..+||+|+.|.+.....                   ........+++++.+
T Consensus       288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~  367 (482)
T KOG1947|consen  288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDL  367 (482)
T ss_pred             HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchh
Confidence                257888888888887    11223333566666655433320                   001123445555555


Q ss_pred             EeeCCCCChhhhhhhhcCCCCCc-EEEecCccchhHhhhcCcccceEccccccchh-----hhcccCCCcceEEEecCC
Q 009796          280 VLFLPHFNDQEFHPLISKFPLLE-DLSIISLETLERIMISSNRLMHLEVYNCSGLN-----RINVDAPNLVSFDFEDNP  352 (525)
Q Consensus       280 ~L~~~~~~~~~~~~ll~~~~~Le-~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~-----~l~~~~p~L~~l~~~g~~  352 (525)
                      .+.++..++......+.+|++|. .+.+..        ..+..++.|.+..|....     .....+.++..+.+.++.
T Consensus       368 ~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~--------~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  368 SLSYCGISDLGLELSLRGCPNLTESLELRL--------CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             hhhhhhccCcchHHHhcCCcccchHHHHHh--------ccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence            55555443333334455555551 111111        111226777777776442     111113445555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.91  E-value=1.2e-06  Score=90.71  Aligned_cols=204  Identities=18%  Similarity=0.153  Sum_probs=122.1

Q ss_pred             ccCCcccceEEEEEeeccccCCchhHHHHHHHHHHcCCeEEEEEeecCCCCcccC-CccccCCCCccEEEecCCcCCCCC
Q 009796           99 CELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQPS  177 (525)
Q Consensus        99 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~  177 (525)
                      ...+++++.|+.-..-......-..+....+..  ...+.+.+-.   .+..... |-.++.+++|++|.|.+|.+....
T Consensus        51 g~~g~~~~~f~a~~s~~ads~vl~qLq~i~d~l--qkt~~lkl~~---~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~  125 (1096)
T KOG1859|consen   51 GLSGAPVDYFRAYVSDNADSRVLEQLQRILDFL--QKTKVLKLLP---SPARDPTEPISIFPFRSLRVLELRGCDLSTAK  125 (1096)
T ss_pred             ccCCCCCceeEEecCCcccchHHHHHHHHHHHH--hhheeeeecc---cCCCCCCCCceeccccceeeEEecCcchhhhh
Confidence            345788888887655322101112223333322  3555555443   1222233 889999999999999999765311


Q ss_pred             CC---------------------------------CCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee
Q 009796          178 HC---------------------------------ANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL  224 (525)
Q Consensus       178 ~~---------------------------------~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l  224 (525)
                      +.                                 ...-.|.+-+.++|+..  .+...+.-.|.|+.|+|++|.....-
T Consensus       126 GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v~  203 (1096)
T KOG1859|consen  126 GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKVD  203 (1096)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhhH
Confidence            11                                 01122444444444431  12223344578888888888765444


Q ss_pred             ecccCCCccEEEEeeec-cccceEEE-eCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCc
Q 009796          225 RISEAHKLKSLILRFTY-QELESVEI-AVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE  302 (525)
Q Consensus       225 ~i~~l~~L~~L~l~~c~-~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le  302 (525)
                      .+..|++|+.|+|++|. ..++.+.. .|. |+.|.+++|.......+.++.+|+.|++++|-+.+..-...+..+..|.
T Consensus       204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~  282 (1096)
T KOG1859|consen  204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLI  282 (1096)
T ss_pred             HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHH
Confidence            55667888999988885 34444433 344 8888888887444557788888888888888777643334455566677


Q ss_pred             EEEecCcc
Q 009796          303 DLSIISLE  310 (525)
Q Consensus       303 ~L~L~~c~  310 (525)
                      .|.|.+.+
T Consensus       283 ~L~LeGNP  290 (1096)
T KOG1859|consen  283 VLWLEGNP  290 (1096)
T ss_pred             HHhhcCCc
Confidence            77777754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.81  E-value=3.1e-06  Score=81.87  Aligned_cols=190  Identities=18%  Similarity=0.169  Sum_probs=113.4

Q ss_pred             CCeEEEEEeecCCCCcccCCcccc-CCCCccEEEecCCcCCC--CCCCCCCCcccEEEece-eeech---HH--------
Q 009796          135 GVKELDFEVITDKNSVNALPQTIF-SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDE-VYVND---QM--------  199 (525)
Q Consensus       135 ~l~~L~l~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~-~~~~~---~~--------  199 (525)
                      ...+++|+.    .....+|...| ..++|+.|+|+.|.++.  |..+.++++|..|.+.+ |++++   ..        
T Consensus        68 ~tveirLdq----N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   68 ETVEIRLDQ----NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ  143 (498)
T ss_pred             cceEEEecc----CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence            445555544    44567777665 57999999999998876  77888899999888887 66532   11        


Q ss_pred             ------------HHHHHhCCcCccEEEEeecCC--CceeecccCCCccEEEE----------------------------
Q 009796          200 ------------VQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLIL----------------------------  237 (525)
Q Consensus       200 ------------l~~ll~~c~~Le~L~L~~c~~--l~~l~i~~l~~L~~L~l----------------------------  237 (525)
                                  .+..+...++|..|.+..+..  +....+..+..++.+.+                            
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence                        123344566676666655432  00000000001111110                            


Q ss_pred             ---------------------------------eeec-cc-cceE-EEeCCCccEEEecccc--ccceeeccCCCCccEE
Q 009796          238 ---------------------------------RFTY-QE-LESV-EIAVPSLQQLELSFSR--VPRLLDVAECPHLRKL  279 (525)
Q Consensus       238 ---------------------------------~~c~-~~-l~~~-~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L  279 (525)
                                                       ..|. .. .+.. .-.+|+|+.|+++++.  ......|.+...++.|
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence                                             0110 00 0000 1146899999999988  4455678889999999


Q ss_pred             EeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhcCc---ccceEcccc
Q 009796          280 VLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSN---RLMHLEVYN  329 (525)
Q Consensus       280 ~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~---~L~~L~l~~  329 (525)
                      +|..|.+..- -...+.++.+|+.|+|++...-...+..+.   .|..|.+-.
T Consensus       304 ~L~~N~l~~v-~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  304 YLTRNKLEFV-SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             hcCcchHHHH-HHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence            9988887652 345678889999999988654333334443   455555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.81  E-value=7.1e-05  Score=83.07  Aligned_cols=186  Identities=20%  Similarity=0.147  Sum_probs=113.3

Q ss_pred             chhHHHHHHHHHHcCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeee-chHH
Q 009796          121 SPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYV-NDQM  199 (525)
Q Consensus       121 ~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~  199 (525)
                      ...+.-|++......-+. .+..  ........|.. .+-...+...+-++.+........++.|++|-+.++.. -...
T Consensus       487 vRe~al~ias~~~~~~e~-~iv~--~~~~~~~~~~~-~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~i  562 (889)
T KOG4658|consen  487 VREMALWIASDFGKQEEN-QIVS--DGVGLSEIPQV-KSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEI  562 (889)
T ss_pred             HHHHHHHHhccccccccc-eEEE--CCcCccccccc-cchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhc
Confidence            456677776655444444 2211  11122334432 22356677777777665444555677899998888752 1222


Q ss_pred             HHHHHhCCcCccEEEEeecCCCceee--cccCCCccEEEEeeec-cccceEEEeCCCccEEEecccc--ccceeeccCCC
Q 009796          200 VQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR--VPRLLDVAECP  274 (525)
Q Consensus       200 l~~ll~~c~~Le~L~L~~c~~l~~l~--i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~  274 (525)
                      ...++...|.|+.|+|++|..+..++  |+++-+||.|+++++. ..++.-.-++..|.+|++....  ...+.....++
T Consensus       563 s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~  642 (889)
T KOG4658|consen  563 SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ  642 (889)
T ss_pred             CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcc
Confidence            34457788999999999988877765  6678889999988875 2222222356678888888776  23344455689


Q ss_pred             CccEEEeeCCCCCh-hhhhhhhcCCCCCcEEEecCcc
Q 009796          275 HLRKLVLFLPHFND-QEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       275 ~L~~L~L~~~~~~~-~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      +|++|.+....... .....-+.++.+|+.+.+..+.
T Consensus       643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS  679 (889)
T ss_pred             cccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence            99999996654222 1223334566666666665443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.80  E-value=8e-06  Score=76.27  Aligned_cols=130  Identities=15%  Similarity=0.040  Sum_probs=64.3

Q ss_pred             eccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEE
Q 009796          269 DVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDF  348 (525)
Q Consensus       269 ~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~  348 (525)
                      .+.....|+.++|++|.|+.  +.+-..-.|.++.|+++.....+.-                +|    ...++|+.|++
T Consensus       279 ~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~----------------nL----a~L~~L~~LDL  336 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQ----------------NL----AELPQLQLLDL  336 (490)
T ss_pred             ecchHhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeeh----------------hh----hhcccceEeec
Confidence            34445567777777777765  3444555677777777764321110                11    12234444444


Q ss_pred             ecCCCCccc-c--cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccc
Q 009796          349 EDNPIPIVS-T--NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESL  425 (525)
Q Consensus       349 ~g~~~~~~~-~--~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~  425 (525)
                      +++...... +  .+-+.+.+.+.. +    . .+.+ .-+..+-+|..|++..|.++..-       .+..++++|.|.
T Consensus       337 S~N~Ls~~~Gwh~KLGNIKtL~La~-N----~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ld-------eV~~IG~LPCLE  402 (490)
T KOG1259|consen  337 SGNLLAECVGWHLKLGNIKTLKLAQ-N----K-IETL-SGLRKLYSLVNLDLSSNQIEELD-------EVNHIGNLPCLE  402 (490)
T ss_pred             ccchhHhhhhhHhhhcCEeeeehhh-h----h-Hhhh-hhhHhhhhheeccccccchhhHH-------HhcccccccHHH
Confidence            443322100 0  233445555542 1    0 0111 11344556666666665544321       112577888888


Q ss_pred             eEEEEEeee
Q 009796          426 SLFMESFSL  434 (525)
Q Consensus       426 ~L~L~~~~~  434 (525)
                      +|.|.+|++
T Consensus       403 ~l~L~~NPl  411 (490)
T KOG1259|consen  403 TLRLTGNPL  411 (490)
T ss_pred             HHhhcCCCc
Confidence            888888744

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=3e-05  Score=72.53  Aligned_cols=83  Identities=19%  Similarity=0.191  Sum_probs=54.5

Q ss_pred             cCCCCccEEEecCCcCCC----CCCCCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecCCC---ceeecccC
Q 009796          158 FSAKLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGL---KRLRISEA  229 (525)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~~l---~~l~i~~l  229 (525)
                      ++..-+..|.+.+|.+..    ......+..++.|+|.+|.+ +=..+..++.++|.|+.|+|++|..-   ..++.. +
T Consensus        42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p-~  120 (418)
T KOG2982|consen   42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP-L  120 (418)
T ss_pred             ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc-c
Confidence            333445567777777654    23345678889999999988 44567788889999999999887642   222211 2


Q ss_pred             CCccEEEEeeec
Q 009796          230 HKLKSLILRFTY  241 (525)
Q Consensus       230 ~~L~~L~l~~c~  241 (525)
                      .+|++|.+.+.+
T Consensus       121 ~nl~~lVLNgT~  132 (418)
T KOG2982|consen  121 KNLRVLVLNGTG  132 (418)
T ss_pred             cceEEEEEcCCC
Confidence            466666665553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.53  E-value=4.1e-05  Score=55.43  Aligned_cols=58  Identities=24%  Similarity=0.216  Sum_probs=39.0

Q ss_pred             CCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecC
Q 009796          161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF  219 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~  219 (525)
                      ++|++|++++|.+..  +..+.++++|++|++++|.+..- -+..+.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence            467788888887766  34567788888888887776311 12346677777777777664

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.43  E-value=7.3e-05  Score=76.62  Aligned_cols=147  Identities=21%  Similarity=0.245  Sum_probs=83.6

Q ss_pred             cCCCCccEEEecCCcCCC-CCCCCCCC-cccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecc-cCCCccE
Q 009796          158 FSAKLLTSLKLFGCKLEQ-PSHCANLQ-SLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRIS-EAHKLKS  234 (525)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~-~~~~~~l~-~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~-~l~~L~~  234 (525)
                      ...+.++.|.+.++.+.. ++....++ +|+.|+++++.+..  ++.-+..+|+|+.|++++|....-.... ..++|+.
T Consensus       113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~  190 (394)
T COG4886         113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN  190 (394)
T ss_pred             hcccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence            334567777777776665 44445553 77777777776532  2233566777777777776542222221 3467777


Q ss_pred             EEEeeeccccceEEE---eCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796          235 LILRFTYQELESVEI---AVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       235 L~l~~c~~~l~~~~~---~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      |+++++.  +..+..   ....|++|.++++. ...+..+..+.++..+.+..+.+..  +...+.++++++.|+++++.
T Consensus       191 L~ls~N~--i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         191 LDLSGNK--ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             eeccCCc--cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceecccccc
Confidence            7777764  333322   22337777777663 4444455666666666665555544  23445566667777776643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.40  E-value=2.6e-05  Score=86.43  Aligned_cols=199  Identities=23%  Similarity=0.243  Sum_probs=109.7

Q ss_pred             ccCCcccc-CCCCccEEEecCCcC-CC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee-c
Q 009796          151 NALPQTIF-SAKLLTSLKLFGCKL-EQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-I  226 (525)
Q Consensus       151 ~~lp~~l~-~~~~L~~L~L~~~~l-~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~-i  226 (525)
                      ..++..++ .++.|++|+|++|.- .. |..++.+-+||+|+|+++.+.  .++.-+.++..|.+|++..+..+...+ +
T Consensus       560 ~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i  637 (889)
T KOG4658|consen  560 LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGI  637 (889)
T ss_pred             hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccch
Confidence            34444434 478888888888743 33 777788888888888888764  355566777788888888776544432 2


Q ss_pred             c-cCCCccEEEEeeeccccceEE----EeCCCccEEEeccccccceeeccCCCCccE----EEeeCCCCChhhhhhhhcC
Q 009796          227 S-EAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSRVPRLLDVAECPHLRK----LVLFLPHFNDQEFHPLISK  297 (525)
Q Consensus       227 ~-~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~----L~L~~~~~~~~~~~~ll~~  297 (525)
                      . .+++|++|.+..-........    ....+|+.|............+..++.|.+    +.+.++..  ......+..
T Consensus       638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~--~~~~~~~~~  715 (889)
T KOG4658|consen  638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK--RTLISSLGS  715 (889)
T ss_pred             hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccc--ceeeccccc
Confidence            2 367888887765430000000    133444444443332211112223333332    22212111  112334566


Q ss_pred             CCCCcEEEecCccchhHhhhc---------CcccceEccccccchhhhc--ccCCCcceEEEecCCC
Q 009796          298 FPLLEDLSIISLETLERIMIS---------SNRLMHLEVYNCSGLNRIN--VDAPNLVSFDFEDNPI  353 (525)
Q Consensus       298 ~~~Le~L~L~~c~~l~~~~~~---------~~~L~~L~l~~c~~L~~l~--~~~p~L~~l~~~g~~~  353 (525)
                      +.+|+.|.+.+|...+.....         ++++..+.+..|..++.+.  .-+|+|+++.+.++..
T Consensus       716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~  782 (889)
T KOG4658|consen  716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRL  782 (889)
T ss_pred             ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccc
Confidence            778888888887653321111         3455666666666554433  4578888888877654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.35  E-value=0.0002  Score=51.83  Aligned_cols=58  Identities=22%  Similarity=0.260  Sum_probs=40.8

Q ss_pred             CCccEEEecccc-cc-ceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796          252 PSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       252 ~~L~~L~l~~~~-~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      |+|++|++++|. .. .+..|.++++|+.|+++++.++.- ....+.++++|++|+++++.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence            566777777776 22 234677888888888888887652 34567888888888888753

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.29  E-value=0.00011  Score=75.22  Aligned_cols=154  Identities=24%  Similarity=0.205  Sum_probs=83.9

Q ss_pred             CcccCCccccCCC-CccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeec
Q 009796          149 SVNALPQTIFSAK-LLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRI  226 (525)
Q Consensus       149 ~~~~lp~~l~~~~-~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i  226 (525)
                      ....+|......+ +|+.|+++++.+.. +.....+++|+.|++++|.+.+  +....+..+.|+.|+++++.. ..++.
T Consensus       127 ~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N~i-~~l~~  203 (394)
T COG4886         127 NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKI-SDLPP  203 (394)
T ss_pred             ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCCcc-ccCch
Confidence            3445555555553 67777777766665 3456667777777777666532  333333566777777766643 22222


Q ss_pred             c--cCCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCc
Q 009796          227 S--EAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE  302 (525)
Q Consensus       227 ~--~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le  302 (525)
                      .  ....|++|.+.++. ...........++..+.+.++. ...+..++.+++++.|+++.+.++..  .. +....+|+
T Consensus       204 ~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i--~~-~~~~~~l~  280 (394)
T COG4886         204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI--SS-LGSLTNLR  280 (394)
T ss_pred             hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc--cc-ccccCccC
Confidence            1  22336666666663 1111112244555555555444 22244566666677777776666652  22 55666666


Q ss_pred             EEEecC
Q 009796          303 DLSIIS  308 (525)
Q Consensus       303 ~L~L~~  308 (525)
                      .|++++
T Consensus       281 ~L~~s~  286 (394)
T COG4886         281 ELDLSG  286 (394)
T ss_pred             EEeccC
Confidence            666665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.29  E-value=5.4e-05  Score=79.59  Aligned_cols=132  Identities=22%  Similarity=0.300  Sum_probs=67.2

Q ss_pred             CCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeec-CCCceeecccCCCccEEEEeeeccccceEEEeCCCccEEEe
Q 009796          182 LQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYC-FGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLEL  259 (525)
Q Consensus       182 l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c-~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l  259 (525)
                      +++|+.|.+.++.. ++..+..+...|++|++|++++| ........                ....+...+++|+.+++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------~~~~~~~~~~~L~~l~l  250 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL----------------LLLLLLSICRKLKSLDL  250 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh----------------HhhhhhhhcCCcCccch
Confidence            56666666665543 44445555556666666666552 11110000                00011123444555555


Q ss_pred             ccccc----cceeeccCCCCccEEEeeCCC-CChhhhhhhhcCCCCCcEEEecCccchhH-----hhhcCcccceEcccc
Q 009796          260 SFSRV----PRLLDVAECPHLRKLVLFLPH-FNDQEFHPLISKFPLLEDLSIISLETLER-----IMISSNRLMHLEVYN  329 (525)
Q Consensus       260 ~~~~~----~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~ll~~~~~Le~L~L~~c~~l~~-----~~~~~~~L~~L~l~~  329 (525)
                      +.+..    ........|++|+.|.+..+. +++.++..+...+++|++|+|++|..+++     +...|++|+.|.+..
T Consensus       251 ~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  251 SGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             hhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            44431    011111236677777765555 67777777788888888888888766432     233355555544433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.26  E-value=0.00022  Score=77.27  Aligned_cols=35  Identities=14%  Similarity=0.114  Sum_probs=17.1

Q ss_pred             CcccEEEeceeee-chHHHHHHHhCCcCccEEEEee
Q 009796          183 QSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFY  217 (525)
Q Consensus       183 ~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~  217 (525)
                      .+|++|++++... ..+.+.++-.-+|.|+.|.+.+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~  157 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG  157 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecC
Confidence            3455555555443 3333444444455555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.07  E-value=0.00079  Score=62.46  Aligned_cols=120  Identities=15%  Similarity=0.087  Sum_probs=63.4

Q ss_pred             CCCCcccEEEeceeee---chHHHHHHHhCCcCccEEEEeecCCCcee---ecccCCCccEEEEeeeccccceEEEeCCC
Q 009796          180 ANLQSLKKLSLDEVYV---NDQMVQSLVRECRVLEDLSFFYCFGLKRL---RISEAHKLKSLILRFTYQELESVEIAVPS  253 (525)
Q Consensus       180 ~~l~~L~~L~L~~~~~---~~~~l~~ll~~c~~Le~L~L~~c~~l~~l---~i~~l~~L~~L~l~~c~~~l~~~~~~~~~  253 (525)
                      ..||+|+..+||.|.|   ....+..++++.+.|++|.+++|.. ..+   .|.  ..|..|       ..-+-..+.|.
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rig--kal~~l-------a~nKKaa~kp~  158 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIG--KALFHL-------AYNKKAADKPK  158 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHH--HHHHHH-------HHHhhhccCCC
Confidence            4566666666666655   2333445556666666666655532 110   011  001100       00011224677


Q ss_pred             ccEEEecccc---ccc---eeeccCCCCccEEEeeCCCCChhhhhhh----hcCCCCCcEEEecCc
Q 009796          254 LQQLELSFSR---VPR---LLDVAECPHLRKLVLFLPHFNDQEFHPL----ISKFPLLEDLSIISL  309 (525)
Q Consensus       254 L~~L~l~~~~---~~~---~~~~~~l~~L~~L~L~~~~~~~~~~~~l----l~~~~~Le~L~L~~c  309 (525)
                      |+.+....+.   ++.   ...+..-.+|+.+.+..|.|....+..+    +..+.+|+.|+|...
T Consensus       159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN  224 (388)
T COG5238         159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN  224 (388)
T ss_pred             ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence            7777776666   111   1123333578888888888876544332    456788888888874

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.00037  Score=65.42  Aligned_cols=176  Identities=17%  Similarity=0.083  Sum_probs=120.0

Q ss_pred             cCCeEEEEEeecCCC-CcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796          134 NGVKELDFEVITDKN-SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~-~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L  210 (525)
                      ..|+++++..  +.. .-.++...+..++.|+.|+|+.|.+..  ........+|++|.|-+...+=.....++...|.+
T Consensus        71 ~~v~elDL~~--N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELDLTG--NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhccc--chhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            4788888865  211 112233344568899999999998876  22335677999999988877545567788899999


Q ss_pred             cEEEEeecCC----Cceeecc-cCCCccEEEEeeec----cccceEEEeCCCccEEEecccc---ccceeeccCCCCccE
Q 009796          211 EDLSFFYCFG----LKRLRIS-EAHKLKSLILRFTY----QELESVEIAVPSLQQLELSFSR---VPRLLDVAECPHLRK  278 (525)
Q Consensus       211 e~L~L~~c~~----l~~l~i~-~l~~L~~L~l~~c~----~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~~~l~~L~~  278 (525)
                      ++|.++.|..    +..-.+. --+.+++|+...|.    .....+.--.|++.++-+..|+   ......+..+|.+--
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            9999988742    1111111 01678888888886    1222333347899999888886   334456777888888


Q ss_pred             EEeeCCCCChhhhhhhhcCCCCCcEEEecCccc
Q 009796          279 LVLFLPHFNDQEFHPLISKFPLLEDLSIISLET  311 (525)
Q Consensus       279 L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~  311 (525)
                      |.|+.+++..=.-...+.+++.|..|.+...+.
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence            888888876533344577888888888887654

>PLN03150 hypothetical protein; Provisional

Probab=96.99  E-value=0.00084  Score=72.71  Aligned_cols=101  Identities=14%  Similarity=0.141  Sum_probs=74.8

Q ss_pred             CccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee--ecccCCCccEEEE
Q 009796          162 LLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLIL  237 (525)
Q Consensus       162 ~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l--~i~~l~~L~~L~l  237 (525)
                      .++.|+|++|.+.+  +..+..+++|+.|+|++|.+.. .++..+..+++|+.|+|++|.....+  .+.++++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            37889999998887  7778899999999999998743 35666889999999999999754433  3557899999999


Q ss_pred             eeec--cccce-EEEeCCCccEEEecccc
Q 009796          238 RFTY--QELES-VEIAVPSLQQLELSFSR  263 (525)
Q Consensus       238 ~~c~--~~l~~-~~~~~~~L~~L~l~~~~  263 (525)
                      ++|.  ..++. +.....++..+++.++.
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCc
Confidence            9886  12221 11113456677887775

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.92  E-value=0.00084  Score=44.76  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=19.7

Q ss_pred             CccEEEecCCcCCC-CCCCCCCCcccEEEeceeee
Q 009796          162 LLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYV  195 (525)
Q Consensus       162 ~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~  195 (525)
                      +|++|++++|.+.. ++.+.+|++|+.|++++|.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            56666666666665 44456666666666666655

...

>PLN03150 hypothetical protein; Provisional

Probab=96.92  E-value=0.00092  Score=72.39  Aligned_cols=101  Identities=13%  Similarity=0.056  Sum_probs=72.8

Q ss_pred             cccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--cccCCCccEEEEeeec--cccceEEEeCCCccEEEe
Q 009796          184 SLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY--QELESVEIAVPSLQQLEL  259 (525)
Q Consensus       184 ~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~--i~~l~~L~~L~l~~c~--~~l~~~~~~~~~L~~L~l  259 (525)
                      .++.|+|+++.+.. .++..+..+++|+.|+|++|.....++  +..+++|+.|++++|.  ..++.....+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            47889999988743 345568889999999999987544443  5678999999999997  223333346899999999


Q ss_pred             cccc--ccceeeccCC-CCccEEEeeCCC
Q 009796          260 SFSR--VPRLLDVAEC-PHLRKLVLFLPH  285 (525)
Q Consensus       260 ~~~~--~~~~~~~~~l-~~L~~L~L~~~~  285 (525)
                      ++|.  +..+..++.. .++..+++.+|.
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCc
Confidence            9987  4555555543 356677777664

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.79  E-value=0.00023  Score=65.73  Aligned_cols=90  Identities=26%  Similarity=0.173  Sum_probs=64.3

Q ss_pred             cCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecCC--Cceee-cc
Q 009796          152 ALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFG--LKRLR-IS  227 (525)
Q Consensus       152 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~~--l~~l~-i~  227 (525)
                      .+....-....|+.|++.++.++....+-.+|+|++|.++.|.. ....+.-++..||+|++|++++|..  +..+. +.
T Consensus        34 ~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   34 KLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             CcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence            34444445678888888888887756667789999999999944 2334666677889999999999864  22222 23


Q ss_pred             cCCCccEEEEeeec
Q 009796          228 EAHKLKSLILRFTY  241 (525)
Q Consensus       228 ~l~~L~~L~l~~c~  241 (525)
                      .+++|.+|++..|.
T Consensus       114 ~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  114 ELENLKSLDLFNCS  127 (260)
T ss_pred             hhcchhhhhcccCC
Confidence            45778888888775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.69  E-value=0.00028  Score=65.16  Aligned_cols=35  Identities=37%  Similarity=0.408  Sum_probs=16.1

Q ss_pred             CCCccEEEEeeec----cccceEEEeCCCccEEEecccc
Q 009796          229 AHKLKSLILRFTY----QELESVEIAVPSLQQLELSFSR  263 (525)
Q Consensus       229 l~~L~~L~l~~c~----~~l~~~~~~~~~L~~L~l~~~~  263 (525)
                      +|+|+.|.++.++    .++..+...||+|++++++++.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk  102 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK  102 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence            4555555555542    2222223344555555555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.68  E-value=0.0049  Score=61.87  Aligned_cols=12  Identities=33%  Similarity=0.398  Sum_probs=5.8

Q ss_pred             CccEEEEeecCC
Q 009796          209 VLEDLSFFYCFG  220 (525)
Q Consensus       209 ~Le~L~L~~c~~  220 (525)
                      +|++|.+++|..
T Consensus        95 nLe~L~Ls~Cs~  106 (426)
T PRK15386         95 GLEKLTVCHCPE  106 (426)
T ss_pred             hhhheEccCccc
Confidence            445555554433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.29  E-value=8.2e-05  Score=77.55  Aligned_cols=118  Identities=21%  Similarity=0.167  Sum_probs=69.5

Q ss_pred             ccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCC--CceeecccCCCccEEEEee
Q 009796          163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLILRF  239 (525)
Q Consensus       163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~--l~~l~i~~l~~L~~L~l~~  239 (525)
                      |...+.+.|.+.. .....-++.|+.|+|++|++...  . .+..|+.|++|+|++|..  +..+...+|. |+.|.+.+
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--D-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--H-HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            3444444454443 33344567788888888877432  2 356678888888887743  4445555544 78888877


Q ss_pred             eccccceEE--EeCCCccEEEecccc---ccceeeccCCCCccEEEeeCCCC
Q 009796          240 TYQELESVE--IAVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHF  286 (525)
Q Consensus       240 c~~~l~~~~--~~~~~L~~L~l~~~~---~~~~~~~~~l~~L~~L~L~~~~~  286 (525)
                      |.  +..+.  .++.+|+.|++++|.   ......+..+..|+.|.|.+|.+
T Consensus       242 N~--l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NA--LTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cH--HHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            74  33221  156677777777776   11122334455666677766643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.17  E-value=0.0062  Score=54.27  Aligned_cols=60  Identities=22%  Similarity=0.218  Sum_probs=32.5

Q ss_pred             CCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecC
Q 009796          159 SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCF  219 (525)
Q Consensus       159 ~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~  219 (525)
                      ..+.|..|.|.+|+++.  +.....+|+|+.|.|.+|.+ .-+++.. +..||.|++|.+-+|.
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP  124 (233)
T ss_pred             CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence            34566666666666655  33344456666666666655 2222333 3455666666655553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.10  E-value=0.0073  Score=40.20  Aligned_cols=33  Identities=30%  Similarity=0.426  Sum_probs=15.2

Q ss_pred             CccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCc
Q 009796          275 HLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL  309 (525)
Q Consensus       275 ~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c  309 (525)
                      +|+.|+++++.+++  ++..+.++++|+.|+++++
T Consensus         2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence            44555555555543  3333445555555555554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.09  E-value=0.016  Score=58.36  Aligned_cols=32  Identities=22%  Similarity=0.239  Sum_probs=13.9

Q ss_pred             CccEEEEeecCCCceeecccCCCccEEEEeee
Q 009796          209 VLEDLSFFYCFGLKRLRISEAHKLKSLILRFT  240 (525)
Q Consensus       209 ~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c  240 (525)
                      +|++|.+.+|..+..++-.-.++|+.|++.+|
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C  104 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIPEGLEKLTVCHC  104 (426)
T ss_pred             CCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence            35555555554443332110134555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.02  E-value=0.00017  Score=66.89  Aligned_cols=96  Identities=27%  Similarity=0.253  Sum_probs=47.9

Q ss_pred             CCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeec-cccceEE--EeCCCccEEE
Q 009796          182 LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVE--IAVPSLQQLE  258 (525)
Q Consensus       182 l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~--~~~~~L~~L~  258 (525)
                      +.+.++|++++|.++|-   .+...+|.||.|.|+-|..-+--++..|++|+.|.+..|. ..+.++.  .++|+|+.|.
T Consensus        18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            33445555555555432   2234455666666655543222223345556666555543 2222222  2567777777


Q ss_pred             ecccc--ccc-----eeeccCCCCccEEE
Q 009796          259 LSFSR--VPR-----LLDVAECPHLRKLV  280 (525)
Q Consensus       259 l~~~~--~~~-----~~~~~~l~~L~~L~  280 (525)
                      +..++  +..     ...+.-+|+|++|+
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            76665  111     12345567777665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=95.79  E-value=0.00033  Score=71.24  Aligned_cols=133  Identities=20%  Similarity=0.198  Sum_probs=68.8

Q ss_pred             cCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce-eecccC
Q 009796          152 ALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR-LRISEA  229 (525)
Q Consensus       152 ~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~-l~i~~l  229 (525)
                      .+|..+.+...|+.|+|+.|.+.. |..+..|| |+.|-+++|.++.  ++.-++..+.|..|+.+.|....- -.+.++
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~--lp~~ig~~~tl~~ld~s~nei~slpsql~~l  188 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTS--LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL  188 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcccc--CCcccccchhHHHhhhhhhhhhhchHHhhhH
Confidence            345555555666666666665555 33333333 6666666665521  222233455666666666543221 113345


Q ss_pred             CCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCCh
Q 009796          230 HKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND  288 (525)
Q Consensus       230 ~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~  288 (525)
                      .+|+.|.+..+. ..+..- +..-.|..|+++.|. ..+|+.|..+..|+.|.|.+|.+..
T Consensus       189 ~slr~l~vrRn~l~~lp~E-l~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  189 TSLRDLNVRRNHLEDLPEE-LCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             HHHHHHHHhhhhhhhCCHH-HhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence            566666666554 111111 113346666666666 5566666666666666666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.74  E-value=0.026  Score=50.39  Aligned_cols=78  Identities=19%  Similarity=0.145  Sum_probs=46.8

Q ss_pred             CCccEEEecCCcCCCCCCCCCCCcccEEEeceeeec--hHHHHHHHhCCcCccEEEEeecCC--Ccee-ecccCCCccEE
Q 009796          161 KLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVN--DQMVQSLVRECRVLEDLSFFYCFG--LKRL-RISEAHKLKSL  235 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~--~~~l~~ll~~c~~Le~L~L~~c~~--l~~l-~i~~l~~L~~L  235 (525)
                      .+...++|+.|.+.....+..+++|.+|.|.+|+++  +..+.   .-.|+|..|.|.+|+.  +..+ +..+||+|++|
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            355677777776655456667888888999888873  22232   3357777777777653  1111 22344555555


Q ss_pred             EEeeec
Q 009796          236 ILRFTY  241 (525)
Q Consensus       236 ~l~~c~  241 (525)
                      .+-++.
T Consensus       119 tll~Np  124 (233)
T KOG1644|consen  119 TLLGNP  124 (233)
T ss_pred             eecCCc
Confidence            555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.63  E-value=0.0017  Score=66.91  Aligned_cols=57  Identities=21%  Similarity=0.269  Sum_probs=25.2

Q ss_pred             CCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecC
Q 009796          161 KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF  219 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~  219 (525)
                      ..+..+.+..+.+.. ......+.+|+.|++.++.+..  +...+.++++|++|++++|.
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~  129 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNK  129 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhh--cccchhhhhcchheeccccc
Confidence            333344444443332 2234445555555555555411  12223445555555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=95.48  E-value=0.00096  Score=68.03  Aligned_cols=152  Identities=18%  Similarity=0.085  Sum_probs=60.4

Q ss_pred             cCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCC-ceeecccC
Q 009796          152 ALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGL-KRLRISEA  229 (525)
Q Consensus       152 ~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l-~~l~i~~l  229 (525)
                      .+|..+..|..|..+.|..|.+.. +....++..|+.|+|+.|++..  ++.-+..|| |+.|-+++|... -...+..+
T Consensus        89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~  165 (722)
T KOG0532|consen   89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKLTSLPEEIGLL  165 (722)
T ss_pred             cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCccccCCcccccc
Confidence            344444444444555554444433 4444445555555555444311  111122222 444444444321 01112233


Q ss_pred             CCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEec
Q 009796          230 HKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII  307 (525)
Q Consensus       230 ~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~  307 (525)
                      ++|..|+.+.|. ..+..-.....+|+.|.+..+. ...+..+.. -.|..|++++|.++.  ++--+.++..|++|.|.
T Consensus       166 ~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~Le  242 (722)
T KOG0532|consen  166 PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLE  242 (722)
T ss_pred             hhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceee--cchhhhhhhhheeeeec
Confidence            445555554443 1111111233444444444444 333333332 224445555554443  23334444455555554


Q ss_pred             Cc
Q 009796          308 SL  309 (525)
Q Consensus       308 ~c  309 (525)
                      +.
T Consensus       243 nN  244 (722)
T KOG0532|consen  243 NN  244 (722)
T ss_pred             cC
Confidence            43

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.40  E-value=0.00081  Score=62.60  Aligned_cols=78  Identities=22%  Similarity=0.318  Sum_probs=51.8

Q ss_pred             CCccEEEEeeeccccceEEE--eCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEec
Q 009796          230 HKLKSLILRFTYQELESVEI--AVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII  307 (525)
Q Consensus       230 ~~L~~L~l~~c~~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~  307 (525)
                      .+.+.|+.++|  ++..|.+  .+|.||.|.|+-+.......+..|++|+.|+|.-|.|.+-.-...+.++|+|+.|.|.
T Consensus        19 ~~vkKLNcwg~--~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   19 ENVKKLNCWGC--GLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHhhhhcccCC--CccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            34555555555  3443332  5677777777777755555677888888888887777764334557788888888887


Q ss_pred             Cc
Q 009796          308 SL  309 (525)
Q Consensus       308 ~c  309 (525)
                      ..
T Consensus        97 EN   98 (388)
T KOG2123|consen   97 EN   98 (388)
T ss_pred             cC
Confidence            63

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.33  E-value=0.01  Score=55.23  Aligned_cols=176  Identities=13%  Similarity=0.087  Sum_probs=103.9

Q ss_pred             CchhHHHHHHHHHHc--CCeEEEEEeecCCCCcccC-------CccccCCCCccEEEecCCcCCC--CC----CCCCCCc
Q 009796          120 SSPLFDKWVELAMEN--GVKELDFEVITDKNSVNAL-------PQTIFSAKLLTSLKLFGCKLEQ--PS----HCANLQS  184 (525)
Q Consensus       120 ~~~~~~~wl~~~~~~--~l~~L~l~~~~~~~~~~~l-------p~~l~~~~~L~~L~L~~~~l~~--~~----~~~~l~~  184 (525)
                      .+.....|++..++.  +++..+++..........+       ...+..|+.|+..+||.|.+..  ++    .++.-..
T Consensus        42 igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~  121 (388)
T COG5238          42 IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTD  121 (388)
T ss_pred             ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCC
Confidence            366778888877653  5666665442222222223       3355689999999999998865  22    3466789


Q ss_pred             ccEEEeceeeec---hHHHH----HH-----HhCCcCccEEEEeecCCCce------eecccCCCccEEEEeeeccccce
Q 009796          185 LKKLSLDEVYVN---DQMVQ----SL-----VRECRVLEDLSFFYCFGLKR------LRISEAHKLKSLILRFTYQELES  246 (525)
Q Consensus       185 L~~L~L~~~~~~---~~~l~----~l-----l~~c~~Le~L~L~~c~~l~~------l~i~~l~~L~~L~l~~c~~~l~~  246 (525)
                      |++|.|++|...   +.-+.    ++     +.+-|.|+......|..-..      ..+.+-.+|+.+.|..|.  +..
T Consensus       122 l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg--Irp  199 (388)
T COG5238         122 LVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG--IRP  199 (388)
T ss_pred             ceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC--cCc
Confidence            999999999762   22222    21     34567777777766643111      011111466666666653  111


Q ss_pred             EEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChh---hhhhhhcCCCCCcEEEecCcc
Q 009796          247 VEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQ---EFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       247 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~---~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      -.+     +.|        ....+..+.+|+.|+|..|.++-.   .+...+..-+.|+.|.+..|-
T Consensus       200 egv-----~~L--------~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         200 EGV-----TML--------AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             chh-----HHH--------HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            000     000        111334567888888888877653   244556677778888888874

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.15  E-value=0.0026  Score=65.53  Aligned_cols=104  Identities=20%  Similarity=0.205  Sum_probs=65.4

Q ss_pred             cccCCCCccEEEecCCcCCCCCC-CCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecCCCceeecccCCCcc
Q 009796          156 TIFSAKLLTSLKLFGCKLEQPSH-CANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLK  233 (525)
Q Consensus       156 ~l~~~~~L~~L~L~~~~l~~~~~-~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~  233 (525)
                      .+..+++|..|++.++.+..... ...+++|++|+|++|.+ +-..    +..++.|+.|++.+|..-..-....+++|+
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~----l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~  165 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG----LSTLTLLKELNLSGNLISDISGLESLKSLK  165 (414)
T ss_pred             ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc----hhhccchhhheeccCcchhccCCccchhhh
Confidence            35567889999999998887444 77899999999999988 3323    344566888888888653332333356677


Q ss_pred             EEEEeeec-cccceE-EEeCCCccEEEecccc
Q 009796          234 SLILRFTY-QELESV-EIAVPSLQQLELSFSR  263 (525)
Q Consensus       234 ~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~  263 (525)
                      .+++++|. ..+... ...+.+|+.+.+.++.
T Consensus       166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             cccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            77776665 111110 1234455555555544

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.82  E-value=0.038  Score=32.02  Aligned_cols=25  Identities=36%  Similarity=0.636  Sum_probs=22.1

Q ss_pred             cccEEEeceeee-chHHHHHHHhCCc
Q 009796          184 SLKKLSLDEVYV-NDQMVQSLVRECR  208 (525)
Q Consensus       184 ~L~~L~L~~~~~-~~~~l~~ll~~c~  208 (525)
                      +||+|+|..+.+ ++..+..++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999 6668999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=94.68  E-value=0.016  Score=55.32  Aligned_cols=38  Identities=24%  Similarity=0.597  Sum_probs=35.6

Q ss_pred             CCccCCCCC----HHHHHHHhcCCChHHHHHHhhhchhhhhh
Q 009796            6 DADHISDLP----TFIIHHIMSFLSPKDVVRTGILSTTWRKF   43 (525)
Q Consensus         6 ~~D~is~LP----d~iL~~Ils~L~~~d~~r~s~vSrrWr~l   43 (525)
                      ..|.|..||    |+|-..|||||+..+++.|-.|||+|+++
T Consensus        71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            468899999    99999999999999999999999999964

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.40  E-value=0.025  Score=53.65  Aligned_cols=36  Identities=19%  Similarity=0.323  Sum_probs=30.9

Q ss_pred             ccCCCCCHHHHHHHhcC-----CChHHHHHHhhhchhhhhh
Q 009796            8 DHISDLPTFIIHHIMSF-----LSPKDVVRTGILSTTWRKF   43 (525)
Q Consensus         8 D~is~LPd~iL~~Ils~-----L~~~d~~r~s~vSrrWr~l   43 (525)
                      +.|+.||||||..||..     ++.+++.++|+|||.|+..
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            45789999999999964     5679999999999999853

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.81  E-value=0.012  Score=52.42  Aligned_cols=87  Identities=21%  Similarity=0.227  Sum_probs=56.5

Q ss_pred             cCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecCCCceeec--
Q 009796          152 ALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLRI--  226 (525)
Q Consensus       152 ~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i--  226 (525)
                      .+|..-..--.++.++-+++.+..  ...+.+++.++.|.+.+|.. ++..+..+-.-.|+|++|+|++|..++.-.+  
T Consensus        92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~  171 (221)
T KOG3864|consen   92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC  171 (221)
T ss_pred             cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence            444332222345666666665543  44566778888888888876 7777777777788888888888887665432  


Q ss_pred             -ccCCCccEEEEe
Q 009796          227 -SEAHKLKSLILR  238 (525)
Q Consensus       227 -~~l~~L~~L~l~  238 (525)
                       ..+++|+.|.+.
T Consensus       172 L~~lknLr~L~l~  184 (221)
T KOG3864|consen  172 LLKLKNLRRLHLY  184 (221)
T ss_pred             HHHhhhhHHHHhc
Confidence             244666666555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.76  E-value=0.027  Score=50.33  Aligned_cols=65  Identities=17%  Similarity=0.193  Sum_probs=45.9

Q ss_pred             eccCCCCccEEEeeCCCCCh-hhhhhhhcCCCCCcEEEecCccchhHhhhc----CcccceEccccccch
Q 009796          269 DVAECPHLRKLVLFLPHFND-QEFHPLISKFPLLEDLSIISLETLERIMIS----SNRLMHLEVYNCSGL  333 (525)
Q Consensus       269 ~~~~l~~L~~L~L~~~~~~~-~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~----~~~L~~L~l~~c~~L  333 (525)
                      .+.+++.++.|.+..+..-+ ..+..+-.-.++|+.|+|++|+.|++-+..    +++|+.|.+.+.+..
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence            45667777778886665444 344555567889999999999988887665    467888877776543

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=92.59  E-value=0.086  Score=52.47  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=32.5

Q ss_pred             CCCCCHHHHHHHhcCCC-hHHHHHHhhhchhhhhhhc
Q 009796           10 ISDLPTFIIHHIMSFLS-PKDVVRTGILSTTWRKFQT   45 (525)
Q Consensus        10 is~LPd~iL~~Ils~L~-~~d~~r~s~vSrrWr~lw~   45 (525)
                      -++||+|+|..|..+|+ .-|++|.+.|||.||..-.
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            57899999999999997 6799999999999998643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.72  E-value=0.22  Score=41.70  Aligned_cols=14  Identities=14%  Similarity=0.501  Sum_probs=6.8

Q ss_pred             eccCCCCccEEEee
Q 009796          269 DVAECPHLRKLVLF  282 (525)
Q Consensus       269 ~~~~l~~L~~L~L~  282 (525)
                      .+..+++|+.+.+.
T Consensus        76 ~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   76 AFSNCTNLKNIDIP   89 (129)
T ss_dssp             TTTT-TTECEEEET
T ss_pred             cccccccccccccC
Confidence            34445555555553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=87.58  E-value=0.24  Score=41.40  Aligned_cols=55  Identities=18%  Similarity=0.321  Sum_probs=22.9

Q ss_pred             CCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEe
Q 009796          159 SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFF  216 (525)
Q Consensus       159 ~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~  216 (525)
                      .|.+|+.+.+... +..  ...+.++++|+.+.+...-..-.  ...+.+|+.|+.+.+.
T Consensus        10 ~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~~~~i~--~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen   10 NCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNNLTSIG--DNAFSNCKSLESITFP   66 (129)
T ss_dssp             T-TT--EEEETST---EE-TTTTTT-TT-SEEEESSTTSCE---TTTTTT-TT-EEEEET
T ss_pred             CCCCCCEEEECCC-eeEeChhhcccccccccccccccccccc--eeeeeccccccccccc
Confidence            4567777776642 222  34455666677666654311100  1224556566666664

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=87.00  E-value=0.11  Score=35.82  Aligned_cols=29  Identities=21%  Similarity=0.340  Sum_probs=25.1

Q ss_pred             CCCccccccccCCCccccccccCCCCCcccc
Q 009796          489 GCQIKCWRHYLKGINTESFDPLQESSEVNYA  519 (525)
Q Consensus       489 ~~~~~~~~~~Lk~v~i~~f~~~~~~~~~~~~  519 (525)
                      ...++|...+||.|++.||.+.+  .+++|.
T Consensus         6 ~~~p~Cl~s~Lk~v~~~~f~g~~--~e~~f~   34 (51)
T PF08387_consen    6 SSVPECLLSHLKFVEIKGFRGEE--NELEFA   34 (51)
T ss_pred             CCCccchhheeEEEEEEeeeCcH--HHHHHH
Confidence            34689999999999999999998  777775

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=86.98  E-value=0.33  Score=51.34  Aligned_cols=39  Identities=31%  Similarity=0.558  Sum_probs=36.5

Q ss_pred             CCCccCCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhh
Q 009796            5 VDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF   43 (525)
Q Consensus         5 ~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~l   43 (525)
                      ...|.|+.||-++..+||++|+.++++++++||+.|+.+
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            457999999999999999999999999999999999965

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.85  E-value=0.69  Score=25.96  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=13.3

Q ss_pred             CCcccEEEeceeeechHHHHHH
Q 009796          182 LQSLKKLSLDEVYVNDQMVQSL  203 (525)
Q Consensus       182 l~~L~~L~L~~~~~~~~~l~~l  203 (525)
                      +++|++|+|++|.+++..+..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            4678888888888866655543

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=84.69  E-value=0.59  Score=25.70  Aligned_cols=14  Identities=36%  Similarity=0.344  Sum_probs=8.2

Q ss_pred             CccEEEecCCcCCC
Q 009796          162 LLTSLKLFGCKLEQ  175 (525)
Q Consensus       162 ~L~~L~L~~~~l~~  175 (525)
                      +|++|+|++|.++.
T Consensus         1 ~L~~Ldls~n~l~~   14 (22)
T PF00560_consen    1 NLEYLDLSGNNLTS   14 (22)
T ss_dssp             TESEEEETSSEESE
T ss_pred             CccEEECCCCcCEe
Confidence            35666666665554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13013 F-box-like_2: F-box-like domain

Probab=82.73  E-value=1.1  Score=36.31  Aligned_cols=30  Identities=13%  Similarity=0.202  Sum_probs=27.0

Q ss_pred             cCCCCCHHHHHHHhcCCChHHHHHHhhhch
Q 009796            9 HISDLPTFIIHHIMSFLSPKDVVRTGILST   38 (525)
Q Consensus         9 ~is~LPd~iL~~Ils~L~~~d~~r~s~vSr   38 (525)
                      .+.+||+||+..|+.+-...+...+...|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            378899999999999999999988887777

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=82.61  E-value=1.1  Score=25.76  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=11.3

Q ss_pred             CCcccEEEeceeee-chHHHHHH
Q 009796          182 LQSLKKLSLDEVYV-NDQMVQSL  203 (525)
Q Consensus       182 l~~L~~L~L~~~~~-~~~~l~~l  203 (525)
                      |++|++|+|++|.. ++.++..+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            34555555555543 55555443

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=82.19  E-value=0.95  Score=26.02  Aligned_cols=19  Identities=16%  Similarity=0.211  Sum_probs=12.3

Q ss_pred             CCCCcEEEecCccchhHhh
Q 009796          298 FPLLEDLSIISLETLERIM  316 (525)
Q Consensus       298 ~~~Le~L~L~~c~~l~~~~  316 (525)
                      |++|++|+|++|..+++..
T Consensus         1 c~~L~~L~l~~C~~itD~g   19 (26)
T smart00367        1 CPNLRELDLSGCTNITDEG   19 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHH
Confidence            4667777777776665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=80.75  E-value=0.37  Score=40.61  Aligned_cols=58  Identities=17%  Similarity=0.198  Sum_probs=28.3

Q ss_pred             CCccEEEecCCcCCC-C-CCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCC
Q 009796          161 KLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG  220 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~  220 (525)
                      ..|+..+|++|.+.. | .....+|.++.|+|++|.+.+  ++.-++..|.|+.|++..|..
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l  112 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPL  112 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCcc
Confidence            344445555555544 2 222344555556665555432  222355555555555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	525
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 65.7 bits (160), Expect = 8e-12
 Identities = 60/353 (16%), Positives = 112/353 (31%), Gaps = 61/353 (17%)

Query: 3   ETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSR 62
           E         LP  ++  I S L   ++++   +   W +       L  D++ +     
Sbjct: 2   ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYR-------LASDESLWQTLDL 54

Query: 63  VKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSP 122
             + L  ++   +  +    + R    F+D  L       F +Q +              
Sbjct: 55  TGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLAEHFSP-FRVQHMD------------- 99

Query: 123 LFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHC--A 180
                           L   VI        L   +     L +L L G +L  P     A
Sbjct: 100 ----------------LSNSVIEVS----TLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139

Query: 181 NLQSLKKLSLDEVY-VNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEA-----HKLKS 234
              +L +L+L      ++  +Q+L+  C  L++L+  +CF      +  A       +  
Sbjct: 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199

Query: 235 LILRFTYQEL--ESVEIAVPSLQQL-ELSFSRVPRLLD-----VAECPHLRKLVL-FLPH 285
           L L    + L    +   V     L  L  S    L +       +  +L+ L L     
Sbjct: 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259

Query: 286 FNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINV 338
              +    L  + P L+ L +  +     + +    L HL++ NCS    I  
Sbjct: 260 IIPETLLEL-GEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI-NCSHFTTIAR 310

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 53/367 (14%), Positives = 115/367 (31%), Gaps = 45/367 (12%)

Query: 9   HISDLPTFIIHHIMSFL-SPKDVVRTGILSTTWRKFQ-TSFPVLDFDQNNFLVKSRVKRV 66
                   +I  +M+++  PKD     ++   W K    +   +           R+ R 
Sbjct: 12  SCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRR 71

Query: 67  LPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLR-ISVSLLEVKE----SS 121
            P NL  +         L+   R    +L      G+    +  IS +L ++K       
Sbjct: 72  FP-NLRSL--------KLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM 122

Query: 122 PLFDKWVELAMENGVKEL------DFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ 175
            + D  ++   +    +L           T     + L   +   + + +L +      +
Sbjct: 123 IVSDLDLDRLAKARADDLETLKLDKCSGFTT----DGLLSIVTHCRKIKTLLMEESSFSE 178

Query: 176 ---------PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRI 226
                      H  +L+ L     +   ++ + ++++ R CR L  +       L+ +  
Sbjct: 179 KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238

Query: 227 -SEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLD------VAECPHLRKL 279
              A  L+        +++   E  +  +   +L    +  +              +RKL
Sbjct: 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298

Query: 280 VLFLPHFNDQEFHPLISKFPLLEDLSI---ISLETLERIMISSNRLMHLEVYNCSGLNRI 336
            L       ++   LI K P LE L     I    LE +     +L  L +   +    +
Sbjct: 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGM 358

Query: 337 NVDAPNL 343
             +   +
Sbjct: 359 EDEEGLV 365

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 21/201 (10%)

Query: 148 NSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANL----QSLKKLSLDEVYVNDQMVQSL 203
           N    +P+   +      L   G     P+    L      ++KL L    +  +   +L
Sbjct: 254 NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313

Query: 204 VRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSF 261
           +++C  LE L      G + L        +LK L +                 Q +E   
Sbjct: 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG-----------ADEQGMEDEE 362

Query: 262 SRV--PRLLDVAE-CPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERI-MI 317
             V    L+ +A+ C  L  + +++    ++    + +    L D  ++ L+  ERI  +
Sbjct: 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422

Query: 318 SSNRLMHLEVYNCSGLNRINV 338
             +  +   +  C  L R   
Sbjct: 423 PLDNGVRSLLIGCKKLRRFAF 443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 33/187 (17%)

Query: 177 SHCANLQSLK--------KLSLDEVYVNDQMVQSLVRECRVLEDLSFF------------ 216
            +C  L+ L+         +  +E  V+ + + +L + C+ LE ++ +            
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398

Query: 217 --YCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVA--- 271
             Y   L   R+    + + +        + S+ I    L++      R   L D+    
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY-LRQGGLTDLGLSY 457

Query: 272 ---ECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI----ISLETLERIMISSNRLMH 324
                P++R ++L     +D+         P L+ L +     S   +   +     L +
Sbjct: 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517

Query: 325 LEVYNCS 331
           L V    
Sbjct: 518 LWVQGYR 524

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.8 bits (155), Expect = 7e-11
 Identities = 55/359 (15%), Positives = 114/359 (31%), Gaps = 46/359 (12%)

Query: 10  ISDLPTFIIHHIMSFL-SPKDVVRTGILSTTWRKFQ----TSFPVLDFDQNNF-LVKSRV 63
               P  ++ H+ SF+   KD     ++  +W + +        + +    +   V  R 
Sbjct: 6   ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRF 65

Query: 64  KRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPL 123
            +V    L+      +F      +  +V   +         ++++R+   ++       +
Sbjct: 66  PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125

Query: 124 FDKWVELAMENGVKELDF---EVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ----- 175
              +         K L     E  +    + A+     + + L  L L    ++      
Sbjct: 126 AKSFKNF------KVLVLSSCEGFSTD-GLAAIAA---TCRNLKELDLRESDVDDVSGHW 175

Query: 176 ----PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEA 229
               P    +L SL  +S     V+   ++ LV  C  L+ L       L++L   +  A
Sbjct: 176 LSHFPDTYTSLVSLN-ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234

Query: 230 HKLKSLILRFTYQE-----LESVEIAVPSLQQLELSFSRVPRLLDVA------ECPHLRK 278
            +L+ L       E        + +A+   ++L    S     +          C  L  
Sbjct: 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL-RCLSGFWDAVPAYLPAVYSVCSRLTT 293

Query: 279 LVLFLPHFNDQEFHPLISKFPLLEDLSI---ISLETLERIMISSNRLMHLEVYNCSGLN 334
           L L        +   L+ + P L+ L +   I    LE +  +   L  L V+      
Sbjct: 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFV 352

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.7 bits (129), Expect = 8e-08
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 35/210 (16%)

Query: 160 AKLLTSLKLFGCKLEQPSHCANLQSLKKL-SLDEVY-VNDQMVQSLVRECRVLEDLSFFY 217
              LT+L L    ++       L    KL  L  +  + D  ++ L   C+ L +L  F 
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 218 CFGLKR---LRISEA---------HKLKSLIL---RFTYQELESVEIAVPSLQQLELSFS 262
                    + ++E           KL+S++    + T   L ++    P++ +  L   
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407

Query: 263 RVPRLLDVAE-------------CPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI--- 306
                  +               C  LR+L L      D+ F  + +    +E LS+   
Sbjct: 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVAFA 466

Query: 307 -ISLETLERIMISSNRLMHLEVYNCSGLNR 335
             S   +  ++   + L  LE+ +C   ++
Sbjct: 467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 27/175 (15%), Positives = 63/175 (36%), Gaps = 29/175 (16%)

Query: 177 SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI 236
           +  ++   L+++ L  + V D  ++ + +  +  + L    C G                
Sbjct: 99  AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG---------------- 142

Query: 237 LRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVA------ECPHLRKLVL--FLPHFND 288
             F+   L ++     +L++L+L  S V  +              L  L +       + 
Sbjct: 143 --FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200

Query: 289 QEFHPLISKFPLLEDLSI---ISLETLERIMISSNRLMHLEVYNCSGLNRINVDA 340
                L+++ P L+ L +   + LE L  ++  + +L  L     +   R +V +
Sbjct: 201 SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 31/204 (15%), Positives = 62/204 (30%), Gaps = 21/204 (10%)

Query: 144 ITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQ 201
               +  + L   +   K L  L  F   +    P+  +    L  L+L    V    + 
Sbjct: 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307

Query: 202 SLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTYQELESVEIAV--PSLQQL 257
            L+ +C  L+ L          L    S    L+ L +  +   +    +A+    L  +
Sbjct: 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367

Query: 258 ELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMI 317
                          CP L  ++ F     +     +    P +    +  +E      +
Sbjct: 368 ------------SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415

Query: 318 SSNRL---MHLEVYNCSGLNRINV 338
           +   L       V +C  L R+++
Sbjct: 416 TLEPLDIGFGAIVEHCKDLRRLSL 439

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 72/465 (15%), Positives = 150/465 (32%), Gaps = 123/465 (26%)

Query: 2   DETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKS 61
           + T  +DH S++        +   S +  +R  +     + ++    VL  +     V++
Sbjct: 212 NWTSRSDHSSNIK-------LRIHSIQAELRRLLK---SKPYENCLLVLL-N-----VQN 255

Query: 62  RVKRVL-PFNLEDMMSRKNFCKSL-----RKFIRFVDASLHRFCELGFPMQKLRISVSLL 115
              +    FNL         CK L     ++   F+ A+          +    ++   L
Sbjct: 256 --AKAWNAFNLS--------CKILLTTRFKQVTDFLSAATTTH----ISLDHHSMT---L 298

Query: 116 EVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ 175
              E   L  K+++       ++L  EV+T     N    +I +     S++      + 
Sbjct: 299 TPDEVKSLLLKYLDCR----PQDLPREVLT----TNPRRLSIIAE----SIRDGLATWDN 346

Query: 176 PSH--CANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED--------LSFFYCFGLKRLR 225
             H  C  L ++ + SL+ +   +   + +     V           LS  +   +K   
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEY--RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 226 ISEAHKL--KSLILR----FTYQELESVEIAVPSLQQ-LELSFSRVPRLLDVAECPHLRK 278
           +   +KL   SL+ +     T          +PS+   L++       L       H R 
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTIS--------IPSIYLELKVKLENEYAL-------H-RS 448

Query: 279 LVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINV 338
           +V    H+N  +        P   D    S               H+  ++   +     
Sbjct: 449 IV---DHYNIPKTFDSDDLIPPYLDQYFYS---------------HI-GHHLKNIEHPER 489

Query: 339 DA--PNL-VSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGEL 395
                 + + F F +  I   ST      ++L +    +    Y     +I   +   + 
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL-NTLQQLKF--YKP---YI--CDNDPKY 541

Query: 396 HLSLN-YKQVLFNIDE--FRSCHPSLPLQVESLSLFMESFSLYMD 437
              +N     L  I+E    S +  L L+   ++L  E  +++ +
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDL-LR---IALMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 67/480 (13%), Positives = 134/480 (27%), Gaps = 151/480 (31%)

Query: 116 EVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAK-----------LLT 164
           E  E    +   + +  +  V   D + + D      +P++I S +           +  
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQD------MPKSILSKEEIDHIIMSKDAVSG 63

Query: 165 SLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL 224
           +L+LF   L +       Q   +  L   Y    ++  +  E R    ++  Y     RL
Sbjct: 64  TLRLFWTLLSKQEEMV--QKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 225 -------------RISEAHKLKSLILRFTYQELESVE-IAV--------PSLQQLELSFS 262
                        R+    KL+  +      EL   + + +          +        
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQAL-----LELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 263 RVPRL-------LDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERI 315
           +V          L++  C     ++  L        + +   +    D S      +  I
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 316 MISSNRLMHLEVYNCSGLNRI--NVDAPNLV-SFDFEDNPIPIVSTNAPCPLNVLFSNFG 372
                RL+  + Y    L  +  NV       +F+              C   +L     
Sbjct: 231 QAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLS------------CK--ILL---- 270

Query: 373 DIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDE----FRSC----HPSLPLQVES 424
              T  +  + +F+ A       H+SL++  +    DE               LP +V +
Sbjct: 271 ---TTRFKQVTDFLSAATTT---HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 425 -----LSLFMESFS---------LYMDV--------------VPSEYEILLDDLFWIFYP 456
                LS+  ES            +++                P+EY  + D L  +F P
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VF-P 382

Query: 457 KN-------LCLSPENWRYRPFVMWF---YDHLQNISTNCCNGCQIKCW----RHYLKGI 502
            +       L            ++WF      +  +         ++         +  I
Sbjct: 383 PSAHIPTILLS-----------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 40/267 (14%), Positives = 87/267 (32%), Gaps = 33/267 (12%)

Query: 146 DKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSL-V 204
           +  + + + +   +   LTSL      +   +    L  L KL           + +L +
Sbjct: 29  EMQATDTISEEQLAT--LTSLDCHNSSITDMTGIEKLTGLTKLIC-----TSNNITTLDL 81

Query: 205 RECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIA-VPSLQQLELSFSR 263
            +   L  L+      L  L ++   KL  L       +L  ++++  P L  L  + + 
Sbjct: 82  SQNTNLTYLACDSN-KLTNLDVTPLTKLTYLNCDTN--KLTKLDVSQNPLLTYLNCARNT 138

Query: 264 VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE----------DLSIISLETLE 313
           +  + DV+    L +L     H N +     ++    L           +L +   + L 
Sbjct: 139 LTEI-DVSHNTQLTELDC---HLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLN 194

Query: 314 RIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGD 373
           R+   +N +  L++     L  ++  +  L   D                 +   +   +
Sbjct: 195 RLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTY-------FDCSVNPLTE 247

Query: 374 IDTHWYLNLMEFIGAFNQIGELHLSLN 400
           +D      L         + E+ L+ N
Sbjct: 248 LDVSTLSKLTTLHCIQTDLLEIDLTHN 274

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 44/248 (17%), Positives = 87/248 (35%), Gaps = 42/248 (16%)

Query: 146 DKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSL 203
           D  + + L  T F    ++S+ L   ++ +      +    L  ++L     N  M+  +
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG---N--MLTEI 472

Query: 204 VRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELS--- 260
            +     E+ +F   + L  + +    KL  L   F    L       P L  ++LS   
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTL-------PYLVGIDLSYNS 524

Query: 261 FSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSN 320
           FS+ P          L+     + +  D + +  + ++P      I    +L ++ I SN
Sbjct: 525 FSKFPT--QPLNSSTLK--GFGIRNQRDAQGNRTLREWPE----GITLCPSLTQLQIGSN 576

Query: 321 RLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCP------LNVLFSNFGDI 374
            +  +               PN+   D +DNP   +  +  CP        + +    DI
Sbjct: 577 DIRKVNEKIT----------PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDI 626

Query: 375 DTHWYLNL 382
                L++
Sbjct: 627 RGCDALDI 634

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 36/237 (15%), Positives = 75/237 (31%), Gaps = 30/237 (12%)

Query: 148 NSVNALPQTIFSA-----KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQ 201
           N +  +            ++  SL +    ++           L +L+L   + +  +++
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

Query: 202 SLVRECRVLE--DLSFFYCFGLKRLRISEAHKLKSL------ILRFTYQELESVEIAV-- 251
           + ++    L    L        + L I E   ++ L        R TY    S +I    
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 252 --PSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPL-------ISKFPLLE 302
              ++  + L+   +  L DV +    + L +            L       ++      
Sbjct: 283 CLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSI 342

Query: 303 DLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTN 359
               ++L +L  + +S N L      + S L        +L   D   N   I+S N
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLG-----TNSLRHLDLSFNGAIIMSAN 394

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 8e-05
 Identities = 27/230 (11%), Positives = 65/230 (28%), Gaps = 54/230 (23%)

Query: 163 LTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLK 222
                L    +        L S+ ++  +   +              ++ + +       
Sbjct: 23  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS------------VQGIQYL------ 64

Query: 223 RLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVL 281
                    +  L L      +++ +   + +L  L L  +++  L  + +   L+ L L
Sbjct: 65  -------PNVTKLFLNGNKLTDIKPLT-NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 116

Query: 282 FLPHFNDQEFHPLISKFPLLEDLSI----IS-------LETLERIMISSNRLMHLE-VYN 329
                +D      +   P LE L +    I+       L  L+ + +  N++  +  +  
Sbjct: 117 EHNGISDING---LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG 173

Query: 330 CSGLNRINVDA------------PNLVSFDFEDNPIPIVSTNAPCPLNVL 367
            + L  + +               NL   +           N    L V 
Sbjct: 174 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 7  ADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRK 42
          A  ++ LP  +  +I+SFLSP D+ + G  +  W +
Sbjct: 2  ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 46/312 (14%), Positives = 82/312 (26%), Gaps = 62/312 (19%)

Query: 70  NLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVE 129
             +   + + +   L ++ R  +A  +R+             +     +      D   +
Sbjct: 18  YFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLED 77

Query: 130 LAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKL 188
                    L+         +   P   F    L  + +    L + P        L+ L
Sbjct: 78  ATQPG-RVALEL----RSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETL 132

Query: 189 SLDEVYVNDQMVQSLVRECRVLEDL--SFFYCFGLKRLRISEAHKLKSLILRFTYQELES 246
           +L                   L  L  S      L+ L I    +L  L       +   
Sbjct: 133 TLA--------------RNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 247 VEIAVPSLQQLELSFSRVPRL------------LDVAECP---------HLRKL-VLFLP 284
               + +LQ L L ++ +  L            L +   P         HL KL  L L 
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237

Query: 285 HFND-QEFHPLISKFPLLEDL-------------SIISLETLERIMISSN-RLMHL--EV 327
                + + P+      L+ L              I  L  LE++ +     L  L   +
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 328 YNCSGLNRINVD 339
                   I V 
Sbjct: 298 AQLPANCIILVP 309

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 26/142 (18%)

Query: 228 EAHKLKSLILRFTYQELESVEIAV---PSLQQLELSFSRVPRLLDVAECPHLRKLVLFLP 284
            A + + + L      +E ++  +    + + L LS + + ++  ++   +LR L L   
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSL--- 77

Query: 285 HFND-QEFHPLISKFPLLEDLSI----IS-------LETLERIMISSNRLMHL-EVYNCS 331
             N  ++   L +    LE+L I    I+       L  L  + +S+N++ +  E+   +
Sbjct: 78  GRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 332 GLNRINVDAPNLVSFDFEDNPI 353
            L         L       NP+
Sbjct: 138 AL-------DKLEDLLLAGNPL 152

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 27/266 (10%), Positives = 67/266 (25%), Gaps = 57/266 (21%)

Query: 143 VITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQM 199
               K     L     +   +    +    LE+    +    +  L  L       N   
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH---NK-- 584

Query: 200 VQSLVRECRVLEDL-SFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLE 258
                     +  L +F     L  L++     ++ +         E        ++ L 
Sbjct: 585 ----------VRHLEAFGTNVKLTDLKLDYNQ-IEEIP--------EDFCAFTDQVEGLG 625

Query: 259 LS---FSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFP--LLEDLSIISLETLE 313
            S      +P + +      +  +      +N       I      +   +         
Sbjct: 626 FSHNKLKYIPNIFNAKSVYVMGSVDF---SYN------KIGSEGRNISCSMDDYKGINAS 676

Query: 314 RIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGD 373
            + +S N +        +           + +    +N +  +  N+  P +  + N   
Sbjct: 677 TVTLSYNEIQKFPTELFATG-------SPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 374 IDTHWYLNLMEFIGAFNQIGELHLSL 399
           +     ++L      FN++  L    
Sbjct: 730 L---TTIDL-----RFNKLTSLSDDF 747

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 39/228 (17%), Positives = 80/228 (35%), Gaps = 42/228 (18%)

Query: 148 NSVNALPQTIFSA------KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQM 199
           N + +  + I  +         +++ L   ++++      A    +  + L     N  +
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN---N--L 708

Query: 200 VQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLEL 259
           + S+       +D ++   + L  + +    KL SL   F    L       P L  +++
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTL-------PYLSNMDV 760

Query: 260 S---FSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIM 316
           S   FS  P          L+     + H  D E + ++ ++P      I +  +L ++ 
Sbjct: 761 SYNCFSSFPT--QPLNSSQLK--AFGIRHQRDAEGNRILRQWPT----GITTCPSLIQLQ 812

Query: 317 ISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPL 364
           I SN +  ++              P L   D  DNP   +   + CP 
Sbjct: 813 IGSNDIRKVDEKLT----------PQLYILDIADNPNISIDVTSVCPY 850

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 18/126 (14%)

Query: 151 NALPQTIFSAKLLTSLKLFGCKL--EQPSHCANLQSLKKLSLDEV-YVND---QMVQSLV 204
           N LP        + ++      +      H   LQ ++K+ L +  Y+ D   + +  L 
Sbjct: 51  NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE 110

Query: 205 RECRVLEDLSFFYCF-----GLKRLRISEAHKLKSLILRFTYQELESVEIAV----PSLQ 255
              + + ++    C      G+  L       LK L L      ++  E  V     SL 
Sbjct: 111 NLQKSMLEMEIISCGNVTDKGIIAL--HHFRNLKYLFLSDLPG-VKEKEKIVQAFKTSLP 167

Query: 256 QLELSF 261
            LEL  
Sbjct: 168 SLELKL 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	525
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.75
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.73
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.71
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.71
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.71
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.7
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.69
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.69
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.68
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.67
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.67
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.66
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.65
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.65
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.63
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.63
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.63
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.62
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.6
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.6
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.6
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.6
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.6
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.59
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.59
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.58
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.57
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.57
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.57
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.57
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.56
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.56
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.56
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.55
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.54
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.52
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.51
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.51
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.48
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.48
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.47
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.46
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.46
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.45
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.45
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.43
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.42
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.42
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.41
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.41
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.39
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.38
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.38
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.37
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.36
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.35
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.34
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.33
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.32
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.3
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.3
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.29
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.29
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.29
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.28
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.27
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.27
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.26
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.25
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.23
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.22
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.22
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.2
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.2
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.2
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.19
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.19
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.1
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.03
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.02
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.98
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.97
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.96
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.94
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.93
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.92
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.91
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.9
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.88
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.82
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.75
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.74
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.72
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.68
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.6
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.47
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.45
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.44
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.43
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.37
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.35
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.32
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.32
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.29
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.28
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.24
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.23
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.21
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.14
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.95
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.95
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.92
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.9
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.66
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.51
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.51
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.51
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.48
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.34
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.01
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.84
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.67
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.61
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.04
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.36
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.98
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	91.8
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	90.59
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	89.29
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	83.0

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=1.3e-27  Score=256.48  Aligned_cols=434  Identities=13%  Similarity=0.091  Sum_probs=238.9

Q ss_pred             CCCCCCCccCC----CCCHHHHHHHhcCC-ChHHHHHHhhhchhhhhhhccCCe-eEeecCccccc-ccccccccc----
Q 009796            1 MDETVDADHIS----DLPTFIIHHIMSFL-SPKDVVRTGILSTTWRKFQTSFPV-LDFDQNNFLVK-SRVKRVLPF----   69 (525)
Q Consensus         1 ~~~~~~~D~is----~LPd~iL~~Ils~L-~~~d~~r~s~vSrrWr~lw~~~~~-l~~~~~~~~~~-~~~~~~~~~----   69 (525)
                      |++. +.||++    +||||||.+||+|| +.+|++++++|||||++++...+. +.+. ..+... .+.-+.+|.    
T Consensus         1 m~~~-~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L   78 (592)
T 3ogk_B            1 MEDP-DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA-LCYTATPDRLSRRFPNLRSL   78 (592)
T ss_dssp             ------------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES-CGGGSCHHHHHHHCTTCSEE
T ss_pred             CCCh-hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe-eccccChHHHHHhCCCCeEE
Confidence            5554 567776    89999999999999 899999999999999998533222 2111 111000 000000000    


Q ss_pred             ------chhhhhh-hhhhhHhHhHHHHHHHHHhhccccCCcccceEEEEEeeccccCCchhHHHHHHHHHHcCCeEEEEE
Q 009796           70 ------NLEDMMS-RKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFE  142 (525)
Q Consensus        70 ------~~~d~~~-~~~~~~~~~~~~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~  142 (525)
                            ...|+-. ........   ...+..+.    .....++.+.+....     .......|+......++++|++.
T Consensus        79 ~L~~~~~~~~~~~~~~~~~~~~---~~~l~~l~----~~~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~L~  146 (592)
T 3ogk_B           79 KLKGKPRAAMFNLIPENWGGYV---TPWVTEIS----NNLRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLKLD  146 (592)
T ss_dssp             EEECSCGGGGGTCSCTTSCCBC---HHHHHHHH----HHCTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEEEE
T ss_pred             EecCCcchhhcccccccccccc---hHHHHHHH----hhCCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEECc
Confidence                  0000000 00000000   00111111    122456666665221     13334455555444458888876


Q ss_pred             eecCCCCcccCCccccCCCCccEEEecCCcCCCC------CCCCCCCcccEEEeceeeec---hHHHHHHHhCCcCccEE
Q 009796          143 VITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQP------SHCANLQSLKKLSLDEVYVN---DQMVQSLVRECRVLEDL  213 (525)
Q Consensus       143 ~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~------~~~~~l~~L~~L~L~~~~~~---~~~l~~ll~~c~~Le~L  213 (525)
                      ... ......++.....|++|++|+|++|.+...      ....++++|++|+++++.++   ...+..++.+|++|++|
T Consensus       147 ~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L  225 (592)
T 3ogk_B          147 KCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV  225 (592)
T ss_dssp             SCE-EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCC-CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence            521 011122333334678888888888876541      12346788888888888773   56778888888999999


Q ss_pred             EEeecCCCce-eecccCCCccEEEEeeeccc-----cceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCC
Q 009796          214 SFFYCFGLKR-LRISEAHKLKSLILRFTYQE-----LESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHF  286 (525)
Q Consensus       214 ~L~~c~~l~~-l~i~~l~~L~~L~l~~c~~~-----l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~  286 (525)
                      ++.+|....- -.+.++++|+.|++..+...     .......+++|+.|.+++.. ...+..+..+++|++|+++++.+
T Consensus       226 ~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             ECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred             eccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence            8888753221 11335678888888754311     11112256788888887765 45555677788888888888888


Q ss_pred             ChhhhhhhhcCCCCCcEEEecCccc---hhHhhhcCcccceEcccc----------ccch-----hhhcccCCCcceEEE
Q 009796          287 NDQEFHPLISKFPLLEDLSIISLET---LERIMISSNRLMHLEVYN----------CSGL-----NRINVDAPNLVSFDF  348 (525)
Q Consensus       287 ~~~~~~~ll~~~~~Le~L~L~~c~~---l~~~~~~~~~L~~L~l~~----------c~~L-----~~l~~~~p~L~~l~~  348 (525)
                      ++..+..++.++++|++|++..+..   +..+...+++|++|++.+          |..+     ..+...+|+|+.|.+
T Consensus       306 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l  385 (592)
T 3ogk_B          306 ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV  385 (592)
T ss_dssp             CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred             CHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence            7776667778888888888874322   233334467888888884          6554     223345788888888


Q ss_pred             ecCCCC----cccc-cCCCCceEEEEee---ecCChhc-cccHHHHHHhccccceEEEEEEee--eeeeeeccccccCCC
Q 009796          349 EDNPIP----IVST-NAPCPLNVLFSNF---GDIDTHW-YLNLMEFIGAFNQIGELHLSLNYK--QVLFNIDEFRSCHPS  417 (525)
Q Consensus       349 ~g~~~~----~~~~-~~~~L~~l~l~~~---~~~~~~~-~~~l~~~l~~l~~L~~L~L~~~~~--~~~~~lp~~~~~~~~  417 (525)
                      ....+.    ..+. .+++|+.+++..+   ..+...- ...+..++.++++|++|+++.+..  .... ++ ..     
T Consensus       386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~-~~-~~-----  458 (592)
T 3ogk_B          386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG-LS-YI-----  458 (592)
T ss_dssp             EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH-HH-HH-----
T ss_pred             ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH-HH-HH-----
Confidence            665554    1222 3778888888631   1111100 012455677788888888875432  1111 11 11     


Q ss_pred             CCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecC
Q 009796          418 LPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSP  463 (525)
Q Consensus       418 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~~l~~l~l~~  463 (525)
                      ...+++|++|.|..+..    .   -.++...+-.++.|++|.|..
T Consensus       459 ~~~~~~L~~L~L~~n~l----~---~~~~~~~~~~~~~L~~L~l~~  497 (592)
T 3ogk_B          459 GQYSPNVRWMLLGYVGE----S---DEGLMEFSRGCPNLQKLEMRG  497 (592)
T ss_dssp             HHSCTTCCEEEECSCCS----S---HHHHHHHHTCCTTCCEEEEES
T ss_pred             HHhCccceEeeccCCCC----C---HHHHHHHHhcCcccCeeeccC
Confidence            11256677777776521    1   123333344445677777743

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2.3e-26  Score=246.84  Aligned_cols=222  Identities=15%  Similarity=0.185  Sum_probs=104.8

Q ss_pred             CCccCCCCCHHHHHHHhcCCC-hHHHHHHhhhchhhhhhhc-cCCeeEeecCcccccccccccccc----------chhh
Q 009796            6 DADHISDLPTFIIHHIMSFLS-PKDVVRTGILSTTWRKFQT-SFPVLDFDQNNFLVKSRVKRVLPF----------NLED   73 (525)
Q Consensus         6 ~~D~is~LPd~iL~~Ils~L~-~~d~~r~s~vSrrWr~lw~-~~~~l~~~~~~~~~~~~~~~~~~~----------~~~d   73 (525)
                      +.|++++||||||.+||+||| .+|++++++|||||+++.. ....+.+.........+.-+.+|.          ...|
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~   81 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD   81 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence            469999999999999999999 9999999999999998721 122233322111000000000000          0000


Q ss_pred             hhhhhhhhHhHhHHHHHHHHHhhccccCCcccceEEEEEeeccccCCchhHHHHHHHHHHcCCeEEEEEeecCCCCcccC
Q 009796           74 MMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNAL  153 (525)
Q Consensus        74 ~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~l  153 (525)
                      +.-..+  .....+...+..+.    .....++.+.+.....    ....+.. +.. ..+++++|++.... ......+
T Consensus        82 ~~l~~~--~~~~~~~~~l~~l~----~~~~~L~~L~L~~~~~----~~~~~~~-l~~-~~~~L~~L~L~~~~-~~~~~~l  148 (594)
T 2p1m_B           82 FNLVPD--GWGGYVYPWIEAMS----SSYTWLEEIRLKRMVV----TDDCLEL-IAK-SFKNFKVLVLSSCE-GFSTDGL  148 (594)
T ss_dssp             GTCSCT--TSCCBCHHHHHHHH----HHCTTCCEEEEESCBC----CHHHHHH-HHH-HCTTCCEEEEESCE-EEEHHHH
T ss_pred             cccccc--cccchhhHHHHHHH----HhCCCCCeEEeeCcEE----cHHHHHH-HHH-hCCCCcEEeCCCcC-CCCHHHH
Confidence            000000  00000001111111    1123455555552211    0111111 110 12467777765410 0111123


Q ss_pred             CccccCCCCccEEEecCCcCCC------CCCCCCCCcccEEEeceee--echHHHHHHHhCCcCccEEEEeecCCCceee
Q 009796          154 PQTIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVY--VNDQMVQSLVRECRVLEDLSFFYCFGLKRLR  225 (525)
Q Consensus       154 p~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~--~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~  225 (525)
                      +.....|++|++|+|++|.+..      ......+++|++|+++++.  +++..+..++.+|++|++|++.+|..+..+.
T Consensus       149 ~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~  228 (594)
T 2p1m_B          149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA  228 (594)
T ss_dssp             HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH
T ss_pred             HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH
Confidence            3333467777888877776543      1223366778888887775  4556677777778888888887774433321


Q ss_pred             --cccCCCccEEEEeee
Q 009796          226 --ISEAHKLKSLILRFT  240 (525)
Q Consensus       226 --i~~l~~L~~L~l~~c  240 (525)
                        +..+++|+.|++..|
T Consensus       229 ~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          229 TLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             HHHHHCTTCSEEECSBC
T ss_pred             HHHhcCCcceEcccccc
Confidence              224566666665544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=2.3e-23  Score=207.22  Aligned_cols=234  Identities=19%  Similarity=0.263  Sum_probs=128.2

Q ss_pred             CCCccCCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhhhcc---CCeeEeecCccccccccccccccchhhhhhhhhhh
Q 009796            5 VDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTS---FPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFC   81 (525)
Q Consensus         5 ~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   81 (525)
                      .+...+++|||||+.+||+||+.+|+++++.|||+|+++...   ...+++....+                        
T Consensus         4 ~~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~------------------------   59 (336)
T 2ast_B            4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL------------------------   59 (336)
T ss_dssp             ---CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC------------------------
T ss_pred             cccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC------------------------
Confidence            345578999999999999999999999999999999998532   12222222211                        


Q ss_pred             HhHhHHHHHHHHHhhccccCCcccceEEEEEeeccccCCchhHHHHHHHHHHcCCeEEEEEeecCCCCcccCCccccCCC
Q 009796           82 KSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAK  161 (525)
Q Consensus        82 ~~~~~~~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~lp~~l~~~~  161 (525)
                                                             .   ...+.....++++.+++..    ......+..++.++
T Consensus        60 ---------------------------------------~---~~~~~~~~~~~l~~L~l~~----n~l~~~~~~~~~~~   93 (336)
T 2ast_B           60 ---------------------------------------H---PDVTGRLLSQGVIAFRCPR----SFMDQPLAEHFSPF   93 (336)
T ss_dssp             ---------------------------------------C---HHHHHHHHHTTCSEEECTT----CEECSCCCSCCCCB
T ss_pred             ---------------------------------------C---HHHHHhhhhccceEEEcCC----ccccccchhhccCC
Confidence                                                   0   0112222234455555432    11112223345566


Q ss_pred             CccEEEecCCcCCC---CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce--ee--cccCCCccE
Q 009796          162 LLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR--LR--ISEAHKLKS  234 (525)
Q Consensus       162 ~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~--l~--i~~l~~L~~  234 (525)
                      +|++|+|++|.+..   +..+..+++|++|+|++|.+++.. ...++.+++|++|++++|..+..  +.  +.++++|+.
T Consensus        94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~-~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHH-HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHH-HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            77777777766543   334556677777777776664432 33445567777777776644432  11  234566666


Q ss_pred             EEEeee-c-c--ccceEEEeCC-CccEEEecccc-----ccceeeccCCCCccEEEeeCCC-CChhhhhhhhcCCCCCcE
Q 009796          235 LILRFT-Y-Q--ELESVEIAVP-SLQQLELSFSR-----VPRLLDVAECPHLRKLVLFLPH-FNDQEFHPLISKFPLLED  303 (525)
Q Consensus       235 L~l~~c-~-~--~l~~~~~~~~-~L~~L~l~~~~-----~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~ll~~~~~Le~  303 (525)
                      |++++| . .  .+......+| +|++|++++|.     ...+..++.+++|+.|+++++. +++..+. .+.++++|++
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~  251 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQH  251 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCE
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCE
Confidence            666666 2 1  0122222455 66666666552     1122334456666666666655 4443222 3345566666


Q ss_pred             EEecCcc
Q 009796          304 LSIISLE  310 (525)
Q Consensus       304 L~L~~c~  310 (525)
                      |++++|.
T Consensus       252 L~l~~~~  258 (336)
T 2ast_B          252 LSLSRCY  258 (336)
T ss_dssp             EECTTCT
T ss_pred             eeCCCCC
Confidence            6666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.75  E-value=8e-18  Score=167.89  Aligned_cols=231  Identities=18%  Similarity=0.168  Sum_probs=105.8

Q ss_pred             ccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEE
Q 009796          157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI  236 (525)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~  236 (525)
                      +..+++|++|++++|.+...+.+..+++|++|++++|.++.  ++ .+..+++|++|++++|.......+..+++|+.|+
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~  138 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLN  138 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred             hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEE
Confidence            44555666666666655552225556666666666655522  11 2455566666666555432222244455566666


Q ss_pred             Eeeec--cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhH
Q 009796          237 LRFTY--QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLER  314 (525)
Q Consensus       237 l~~c~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~  314 (525)
                      +++|.  ..+.. ...+++|++|+++++.......++.+++|+.|+++++.+++.  .. +..+++|+.|+++++.....
T Consensus       139 l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~  214 (347)
T 4fmz_A          139 LGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI--SP-LASLTSLHYFTAYVNQITDI  214 (347)
T ss_dssp             CTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccc--cc-ccCCCccceeecccCCCCCC
Confidence            65553  11111 113455555555555511111245555555555555555442  11 44555555555555432111


Q ss_pred             h-hhcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC--cccccCCCCceEEEEeeecCChhccccHHHHHHhc
Q 009796          315 I-MISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP--IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAF  389 (525)
Q Consensus       315 ~-~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l  389 (525)
                      . ...+++|+.|+++++.  .+.. ....++|+.|.++++.+.  ..+..+++|+.+++++ +.+...      ..+..+
T Consensus       215 ~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~-n~l~~~------~~~~~l  286 (347)
T 4fmz_A          215 TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGS-NQISDI------SVLNNL  286 (347)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS-SCCCCC------GGGGGC
T ss_pred             chhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccC-CccCCC------hhhcCC
Confidence            1 1223455555555532  1111 123455555555555432  1223455555555543 111111      123445


Q ss_pred             cccceEEEEEEee
Q 009796          390 NQIGELHLSLNYK  402 (525)
Q Consensus       390 ~~L~~L~L~~~~~  402 (525)
                      ++|+.|+++.|..
T Consensus       287 ~~L~~L~L~~n~l  299 (347)
T 4fmz_A          287 SQLNSLFLNNNQL  299 (347)
T ss_dssp             TTCSEEECCSSCC
T ss_pred             CCCCEEECcCCcC
Confidence            5555555554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.73  E-value=5.9e-18  Score=168.87  Aligned_cols=272  Identities=18%  Similarity=0.221  Sum_probs=203.6

Q ss_pred             HcCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796          133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (525)
Q Consensus       133 ~~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~  212 (525)
                      .+++++|++..  +  ....++. +..+++|++|++++|.+...+.+..+++|++|++++|.+.+-  .. +..+++|++
T Consensus        65 ~~~L~~L~l~~--n--~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~--~~-~~~l~~L~~  136 (347)
T 4fmz_A           65 LTNLEYLNLNG--N--QITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI--SP-LANLTKMYS  136 (347)
T ss_dssp             CTTCCEEECCS--S--CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC--GG-GTTCTTCCE
T ss_pred             cCCccEEEccC--C--ccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc--hh-hccCCceeE
Confidence            35899999876  2  2334554 778999999999999888756688999999999999988432  22 788999999


Q ss_pred             EEEeecCCCceee-cccCCCccEEEEeeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhh
Q 009796          213 LSFFYCFGLKRLR-ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQE  290 (525)
Q Consensus       213 L~L~~c~~l~~l~-i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~  290 (525)
                      |++++|.....+. +..+++|+.|++++|. ..+.. ...+++|++|++++|.......+..+++|+.|+++++.+++..
T Consensus       137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~  215 (347)
T 4fmz_A          137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT  215 (347)
T ss_dssp             EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred             EECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCc
Confidence            9999997655433 5678999999999986 22222 2368999999999998222223889999999999999988742


Q ss_pred             hhhhhcCCCCCcEEEecCccchhHh-hhcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC--cccccCCCCce
Q 009796          291 FHPLISKFPLLEDLSIISLETLERI-MISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP--IVSTNAPCPLN  365 (525)
Q Consensus       291 ~~~ll~~~~~Le~L~L~~c~~l~~~-~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~--~~~~~~~~L~~  365 (525)
                        . +..+++|++|++++|...... ...+++|+.|+++++.  .+..+ ...++|+.|.++++.+.  ..+..+++|+.
T Consensus       216 --~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~  291 (347)
T 4fmz_A          216 --P-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAV-KDLTKLKMLNVGSNQISDISVLNNLSQLNS  291 (347)
T ss_dssp             --G-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGG-TTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             --h-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhH-hcCCCcCEEEccCCccCCChhhcCCCCCCE
Confidence              2 778999999999998542211 3346899999999863  22222 45789999999998765  33456899999


Q ss_pred             EEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796          366 VLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (525)
Q Consensus       366 l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~  432 (525)
                      ++++. +.+    .......+..+++|+.|+++.|......          .+..+++|++|++.+|
T Consensus       292 L~L~~-n~l----~~~~~~~l~~l~~L~~L~L~~n~l~~~~----------~~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          292 LFLNN-NQL----GNEDMEVIGGLTNLTTLFLSQNHITDIR----------PLASLSKMDSADFANQ  343 (347)
T ss_dssp             EECCS-SCC----CGGGHHHHHTCTTCSEEECCSSSCCCCG----------GGGGCTTCSEESSSCC
T ss_pred             EECcC-CcC----CCcChhHhhccccCCEEEccCCcccccc----------Chhhhhccceeehhhh
Confidence            99985 332    2235567789999999999988766532          2556788999988877

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.71  E-value=6.5e-17  Score=159.95  Aligned_cols=217  Identities=18%  Similarity=0.212  Sum_probs=141.7

Q ss_pred             HHHHHHcCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhC
Q 009796          128 VELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRE  206 (525)
Q Consensus       128 l~~~~~~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~  206 (525)
                      +..+...+++.|++..  .  ....+|..++.+++|++|+|++|.+.. |..+.++++|++|+|++|.+.  .++..+.+
T Consensus        75 l~~~~~~~l~~L~L~~--n--~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~  148 (328)
T 4fcg_A           75 LEDATQPGRVALELRS--V--PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIAS  148 (328)
T ss_dssp             HHHHTSTTCCEEEEES--S--CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGG
T ss_pred             HhcccccceeEEEccC--C--CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhc
Confidence            3344446899999987  2  234889999999999999999999887 777899999999999999885  35556889


Q ss_pred             CcCccEEEEeecCCCceeec-----------ccCCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCC
Q 009796          207 CRVLEDLSFFYCFGLKRLRI-----------SEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAEC  273 (525)
Q Consensus       207 c~~Le~L~L~~c~~l~~l~i-----------~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l  273 (525)
                      +++|++|++++|.....++.           .++++|+.|++++|. ..++.....+++|++|++++|. ...+..++.+
T Consensus       149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l  228 (328)
T 4fcg_A          149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL  228 (328)
T ss_dssp             CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred             CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence            99999999999877555432           126777777777775 2222112245666666666666 3334456666


Q ss_pred             CCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCC
Q 009796          274 PHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPI  353 (525)
Q Consensus       274 ~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~  353 (525)
                      ++|+.|++++|.+.+. ++..+.++++|++|+|++|...+.+...                  ....++|+.|+++++..
T Consensus       229 ~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~------------------~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          229 PKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLD------------------IHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             TTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTT------------------GGGCTTCCEEECTTCTT
T ss_pred             CCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchh------------------hhcCCCCCEEeCCCCCc
Confidence            6666666666665553 3344556666666666665433222111                  12334555555555432


Q ss_pred             ----CcccccCCCCceEEEE
Q 009796          354 ----PIVSTNAPCPLNVLFS  369 (525)
Q Consensus       354 ----~~~~~~~~~L~~l~l~  369 (525)
                          |..+.++++|+.+.+.
T Consensus       290 ~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          290 LSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             CCCCCGGGGGSCTTCEEECC
T ss_pred             hhhccHHHhhccCceEEeCC
Confidence                4455567777777765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.71  E-value=5.8e-18  Score=186.82  Aligned_cols=271  Identities=16%  Similarity=0.177  Sum_probs=148.2

Q ss_pred             cCCccccCCC-CccEEEecCCcCCC--CCCCCC--CCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce--e
Q 009796          152 ALPQTIFSAK-LLTSLKLFGCKLEQ--PSHCAN--LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR--L  224 (525)
Q Consensus       152 ~lp~~l~~~~-~L~~L~L~~~~l~~--~~~~~~--l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~--l  224 (525)
                      .+|..+..++ +|++|++++|.+.+  +.....  +++|++|++++|.+++. ++..+.++++|++|++++|.....  -
T Consensus       358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~  436 (768)
T 3rgz_A          358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPS  436 (768)
T ss_dssp             CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred             cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc-cCHHHhcCCCCCEEECcCCcccCcccH
Confidence            4455554444 56666666665543  233332  56666666666665321 333456667777777766643221  2


Q ss_pred             ecccCCCccEEEEeeec-c-ccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCC
Q 009796          225 RISEAHKLKSLILRFTY-Q-ELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPL  300 (525)
Q Consensus       225 ~i~~l~~L~~L~l~~c~-~-~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~  300 (525)
                      .+..+++|+.|++++|. . .+......+++|++|++++|.  +..+..++.+++|+.|++++|.+++. ++..+.++++
T Consensus       437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~  515 (768)
T 3rgz_A          437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLEN  515 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTT
T ss_pred             HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc-CChHHhcCCC
Confidence            23455667777776665 1 111112245667777776666  34455566667777777766666653 3444556666


Q ss_pred             CcEEEecCccchh---HhhhcCcccceEccccccchhhh-----------------------------------------
Q 009796          301 LEDLSIISLETLE---RIMISSNRLMHLEVYNCSGLNRI-----------------------------------------  336 (525)
Q Consensus       301 Le~L~L~~c~~l~---~~~~~~~~L~~L~l~~c~~L~~l-----------------------------------------  336 (525)
                      |+.|+|+++....   .....+++|+.|++++++-...+                                         
T Consensus       516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (768)
T 3rgz_A          516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE  595 (768)
T ss_dssp             CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred             CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence            7777776664321   11223456666666553210000                                         


Q ss_pred             --------------------------------cccCCCcceEEEecCCC----CcccccCCCCceEEEEeeecCChhccc
Q 009796          337 --------------------------------NVDAPNLVSFDFEDNPI----PIVSTNAPCPLNVLFSNFGDIDTHWYL  380 (525)
Q Consensus       337 --------------------------------~~~~p~L~~l~~~g~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~  380 (525)
                                                      ....++|+.++++++.+    |..++++++|+.+++++ +.+    .+
T Consensus       596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~-N~l----~g  670 (768)
T 3rgz_A          596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH-NDI----SG  670 (768)
T ss_dssp             CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS-SCC----CS
T ss_pred             cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC-Ccc----CC
Confidence                                            01124566666666543    34555677777777763 222    22


Q ss_pred             cHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccC
Q 009796          381 NLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMD  437 (525)
Q Consensus       381 ~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~  437 (525)
                      .++.-+.++++|+.|+|++|...+.  +|+      .+..+..|++|+|..|.+.++
T Consensus       671 ~ip~~l~~L~~L~~LdLs~N~l~g~--ip~------~l~~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          671 SIPDEVGDLRGLNILDLSSNKLDGR--IPQ------AMSALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEEC--CCG------GGGGCCCCSEEECCSSEEEEE
T ss_pred             CCChHHhCCCCCCEEECCCCcccCc--CCh------HHhCCCCCCEEECcCCccccc
Confidence            3444556777777777777766655  441      344567777777777655554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.71  E-value=1.1e-17  Score=184.66  Aligned_cols=283  Identities=14%  Similarity=0.025  Sum_probs=175.8

Q ss_pred             cCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEE
Q 009796          158 FSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI  236 (525)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~  236 (525)
                      ..+++|++|+|++|.+.. .+.+.++++|++|+|++|.+++ .++..+..+++|++|++++|......+...+++|+.|+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~  275 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS  275 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS-CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC-cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence            578899999999998877 4448889999999999998853 25667889999999999999765444444678999999


Q ss_pred             Eeeec--cccceEEEe-CCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc
Q 009796          237 LRFTY--QELESVEIA-VPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET  311 (525)
Q Consensus       237 l~~c~--~~l~~~~~~-~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~  311 (525)
                      +++|.  ..++..... +++|++|++++|.  ...+..++.+++|+.|+++++.+++......+.++++|++|+++++..
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence            99886  122222223 5899999999988  456677889999999999999887654445578889999999988753


Q ss_pred             hhHhh---hcC-cccceEccccccch----hh-------------------------hcccCCCcceEEEecCCC----C
Q 009796          312 LERIM---ISS-NRLMHLEVYNCSGL----NR-------------------------INVDAPNLVSFDFEDNPI----P  354 (525)
Q Consensus       312 l~~~~---~~~-~~L~~L~l~~c~~L----~~-------------------------l~~~~p~L~~l~~~g~~~----~  354 (525)
                      ...+.   ... ++|+.|+++++.--    ..                         ....+++|+.|+++++.+    |
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  435 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP  435 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence            21111   112 25666666653210    00                         111234444444444321    2


Q ss_pred             cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796          355 IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL  434 (525)
Q Consensus       355 ~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~  434 (525)
                      ..+..+++|+.++++. +..    .+..+..+..+++|++|+++.|.....  +|     . .+..+++|++|+|..|..
T Consensus       436 ~~l~~l~~L~~L~L~~-n~l----~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p-----~-~l~~l~~L~~L~L~~N~l  502 (768)
T 3rgz_A          436 SSLGSLSKLRDLKLWL-NML----EGEIPQELMYVKTLETLILDFNDLTGE--IP-----S-GLSNCTNLNWISLSNNRL  502 (768)
T ss_dssp             GGGGGCTTCCEEECCS-SCC----CSCCCGGGGGCTTCCEEECCSSCCCSC--CC-----G-GGGGCTTCCEEECCSSCC
T ss_pred             HHHhcCCCCCEEECCC-Ccc----cCcCCHHHcCCCCceEEEecCCcccCc--CC-----H-HHhcCCCCCEEEccCCcc
Confidence            2333444455555442 111    111223344556666666665554433  22     1 344567777777777643


Q ss_pred             ccCCCchhHHHHHHhHhhhccccceeec
Q 009796          435 YMDVVPSEYEILLDDLFWIFYPKNLCLS  462 (525)
Q Consensus       435 ~~~~~~~~~~~~~~~Ll~~~~l~~l~l~  462 (525)
                      .+.        +...+-..+.+++|.+.
T Consensus       503 ~~~--------~p~~~~~l~~L~~L~L~  522 (768)
T 3rgz_A          503 TGE--------IPKWIGRLENLAILKLS  522 (768)
T ss_dssp             CSC--------CCGGGGGCTTCCEEECC
T ss_pred             CCc--------CChHHhcCCCCCEEECC
Confidence            322        11223334567777773

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.71  E-value=8.6e-18  Score=175.26  Aligned_cols=280  Identities=18%  Similarity=0.097  Sum_probs=171.3

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le  211 (525)
                      .+++.|++..  + ......|..+..+++|++|+|++|.+..  +..+.++++|++|+|++|.++.- ....+.++++|+
T Consensus        32 ~~l~~L~L~~--n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~  107 (477)
T 2id5_A           32 TETRLLDLGK--N-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLT  107 (477)
T ss_dssp             TTCSEEECCS--S-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCC
T ss_pred             CCCcEEECCC--C-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCC
Confidence            3567777654  1 1111224456677888888888887766  55677788888888888776321 122356778888


Q ss_pred             EEEEeecCCCce--eecccCCCccEEEEeeeccccceE---E-EeCCCccEEEecccc-c-cceeeccCCCCccEEEeeC
Q 009796          212 DLSFFYCFGLKR--LRISEAHKLKSLILRFTYQELESV---E-IAVPSLQQLELSFSR-V-PRLLDVAECPHLRKLVLFL  283 (525)
Q Consensus       212 ~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~~~l~~~---~-~~~~~L~~L~l~~~~-~-~~~~~~~~l~~L~~L~L~~  283 (525)
                      +|+|++|.....  ..+..+++|+.|++++|.  +..+   . ..+++|++|+++++. . .....+..+++|+.|++.+
T Consensus       108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  185 (477)
T 2id5_A          108 KLDISENKIVILLDYMFQDLYNLKSLEVGDND--LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH  185 (477)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEEECCTT--CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred             EEECCCCccccCChhHccccccCCEEECCCCc--cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence            888877754222  124456788888887774  2222   1 246788888888776 2 2223467778888888888


Q ss_pred             CCCChhhhhhhhcCCCCCcEEEecCccchhHhhh---cCcccceEccccccchhhh----cccCCCcceEEEecCCCC--
Q 009796          284 PHFNDQEFHPLISKFPLLEDLSIISLETLERIMI---SSNRLMHLEVYNCSGLNRI----NVDAPNLVSFDFEDNPIP--  354 (525)
Q Consensus       284 ~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~---~~~~L~~L~l~~c~~L~~l----~~~~p~L~~l~~~g~~~~--  354 (525)
                      +.+++. ....+.++++|+.|+++++..+..+..   ...+|+.|+++++. +..+    ....++|+.|+++++.+.  
T Consensus       186 n~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  263 (477)
T 2id5_A          186 LNINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTI  263 (477)
T ss_dssp             CCCCEE-CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred             CcCcEe-ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCcc
Confidence            777653 334466778888888887655433322   23467777777653 2221    235677888888777653  


Q ss_pred             --cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796          355 --IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (525)
Q Consensus       355 --~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~  432 (525)
                        ..+..+++|+.++++. +.+..    .....+..+++|+.|+|+.|....   +|+.     .+..+++|+.|.|.+|
T Consensus       264 ~~~~~~~l~~L~~L~L~~-n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~---~~~~-----~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          264 EGSMLHELLRLQEIQLVG-GQLAV----VEPYAFRGLNYLRVLNVSGNQLTT---LEES-----VFHSVGNLETLILDSN  330 (477)
T ss_dssp             CTTSCTTCTTCCEEECCS-SCCSE----ECTTTBTTCTTCCEEECCSSCCSC---CCGG-----GBSCGGGCCEEECCSS
T ss_pred             ChhhccccccCCEEECCC-Cccce----ECHHHhcCcccCCEEECCCCcCce---eCHh-----HcCCCcccCEEEccCC
Confidence              2344577788888764 22222    122334567788888887665543   2222     2344677888888776


Q ss_pred             ee
Q 009796          433 SL  434 (525)
Q Consensus       433 ~~  434 (525)
                      .+
T Consensus       331 ~l  332 (477)
T 2id5_A          331 PL  332 (477)
T ss_dssp             CE
T ss_pred             Cc
Confidence            44

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.70  E-value=9.4e-17  Score=166.87  Aligned_cols=164  Identities=17%  Similarity=0.237  Sum_probs=74.1

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .++++|+++.  +  ....+|. +..+++|++|++++|.+.....+.++++|++|++++|.+.+-  .. +..+++|++|
T Consensus        68 ~~L~~L~Ls~--n--~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L  139 (466)
T 1o6v_A           68 NNLTQINFSN--N--QLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--DP-LKNLTNLNRL  139 (466)
T ss_dssp             TTCCEEECCS--S--CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEE
T ss_pred             cCCCEEECCC--C--ccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC--hH-HcCCCCCCEE
Confidence            3556665543  1  1222332 445556666666666555522255566666666665555221  11 4555666666


Q ss_pred             EEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhh
Q 009796          214 SFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHP  293 (525)
Q Consensus       214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~  293 (525)
                      ++++|.....-.+..+++|+.|++.++...+.. ...+++|+.|+++++.......+..+++|+.|+++++.+++..  .
T Consensus       140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~  216 (466)
T 1o6v_A          140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--P  216 (466)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G
T ss_pred             ECCCCccCCChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccc--c
Confidence            665553211112334445555554322211111 1134555555555554111123445555555555555544421  1


Q ss_pred             hhcCCCCCcEEEecCc
Q 009796          294 LISKFPLLEDLSIISL  309 (525)
Q Consensus       294 ll~~~~~Le~L~L~~c  309 (525)
                       +..+++|+.|+++++
T Consensus       217 -~~~l~~L~~L~l~~n  231 (466)
T 1o6v_A          217 -LGILTNLDELSLNGN  231 (466)
T ss_dssp             -GGGCTTCCEEECCSS
T ss_pred             -ccccCCCCEEECCCC
Confidence             334455555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.69  E-value=4.4e-17  Score=168.73  Aligned_cols=285  Identities=14%  Similarity=0.065  Sum_probs=166.4

Q ss_pred             cccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHH-HHHhCCcCccEEEEeecCCCceee---cccC
Q 009796          156 TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQ-SLVRECRVLEDLSFFYCFGLKRLR---ISEA  229 (525)
Q Consensus       156 ~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~-~ll~~c~~Le~L~L~~c~~l~~l~---i~~l  229 (525)
                      .+..+++|++|+|++|.+..  +..+.++++|++|+|++|.+++..+. ..+..+++|++|++++|.......   +.++
T Consensus        74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  153 (455)
T 3v47_A           74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM  153 (455)
T ss_dssp             TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred             cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence            44556666666666666554  44556666666666666665432111 124556666666666665322211   3455


Q ss_pred             CCccEEEEeeec-cccceEE---EeCCCccEEEecccc-ccc-e--------eeccCCCCccEEEeeCCCCChhhhhhhh
Q 009796          230 HKLKSLILRFTY-QELESVE---IAVPSLQQLELSFSR-VPR-L--------LDVAECPHLRKLVLFLPHFNDQEFHPLI  295 (525)
Q Consensus       230 ~~L~~L~l~~c~-~~l~~~~---~~~~~L~~L~l~~~~-~~~-~--------~~~~~l~~L~~L~L~~~~~~~~~~~~ll  295 (525)
                      ++|+.|++++|. .....-.   ...++|+.|+++++. ... .        ..+..+++|+.|+++++.+++.....+.
T Consensus       154 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  233 (455)
T 3v47_A          154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF  233 (455)
T ss_dssp             TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH
T ss_pred             CcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh
Confidence            666666666664 1111000   122456666666655 111 0        0123456788888888888775333322


Q ss_pred             --cCCCCCcEEEecCccchhH---------------hhhcCcccceEccccccch---hhhcccCCCcceEEEecCCCC-
Q 009796          296 --SKFPLLEDLSIISLETLER---------------IMISSNRLMHLEVYNCSGL---NRINVDAPNLVSFDFEDNPIP-  354 (525)
Q Consensus       296 --~~~~~Le~L~L~~c~~l~~---------------~~~~~~~L~~L~l~~c~~L---~~l~~~~p~L~~l~~~g~~~~-  354 (525)
                        ...++|+.|+++++.....               .....++|+.|+++++.--   .......++|+.|.++++.+. 
T Consensus       234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  313 (455)
T 3v47_A          234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK  313 (455)
T ss_dssp             HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred             ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence              2237788888877632111               1112357888888875421   222245688999999888764 


Q ss_pred             ---cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEE
Q 009796          355 ---IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMES  431 (525)
Q Consensus       355 ---~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~  431 (525)
                         ..+.++++|+.++++. +.+.    ......+..+++|++|+++.|.....  .|     . .+..+++|++|+|.+
T Consensus       314 ~~~~~~~~l~~L~~L~Ls~-N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~-----~-~~~~l~~L~~L~L~~  380 (455)
T 3v47_A          314 IDDNAFWGLTHLLKLNLSQ-NFLG----SIDSRMFENLDKLEVLDLSYNHIRAL--GD-----Q-SFLGLPNLKELALDT  380 (455)
T ss_dssp             ECTTTTTTCTTCCEEECCS-SCCC----EECGGGGTTCTTCCEEECCSSCCCEE--CT-----T-TTTTCTTCCEEECCS
T ss_pred             cChhHhcCcccCCEEECCC-CccC----CcChhHhcCcccCCEEECCCCccccc--Ch-----h-hccccccccEEECCC
Confidence               3455788999999985 3222    22344567899999999998877654  23     2 466789999999998


Q ss_pred             eeeccCCCchhHHHHHHhH-hhhccccceeec
Q 009796          432 FSLYMDVVPSEYEILLDDL-FWIFYPKNLCLS  462 (525)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~L-l~~~~l~~l~l~  462 (525)
                      |.+..         +.... -..+.++++.+.
T Consensus       381 N~l~~---------~~~~~~~~l~~L~~L~l~  403 (455)
T 3v47_A          381 NQLKS---------VPDGIFDRLTSLQKIWLH  403 (455)
T ss_dssp             SCCSC---------CCTTTTTTCTTCCEEECC
T ss_pred             Ccccc---------CCHhHhccCCcccEEEcc
Confidence            84432         11222 234578999885

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.69  E-value=1.8e-17  Score=172.80  Aligned_cols=285  Identities=16%  Similarity=0.058  Sum_probs=206.7

Q ss_pred             CcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee-
Q 009796          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-  225 (525)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~-  225 (525)
                      ....+|..+.  ++++.|+|++|.+..  +..+.++++|++|+|++|.++.. .+..+.++++|++|+|++|.. ..+. 
T Consensus        22 ~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~   97 (477)
T 2id5_A           22 RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRL-KLIPL   97 (477)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCC-CSCCT
T ss_pred             CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcC-CccCc
Confidence            3445666553  589999999999887  56788999999999999987431 234478899999999999863 3332 


Q ss_pred             --cccCCCccEEEEeeeccccceE----EEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcC
Q 009796          226 --ISEAHKLKSLILRFTYQELESV----EIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISK  297 (525)
Q Consensus       226 --i~~l~~L~~L~l~~c~~~l~~~----~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~  297 (525)
                        +.++++|+.|++++|.  +..+    ...+++|++|+++++.  ...+..++.+++|+.|+++++.+++. ....+.+
T Consensus        98 ~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~  174 (477)
T 2id5_A           98 GVFTGLSNLTKLDISENK--IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSH  174 (477)
T ss_dssp             TSSTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHTT
T ss_pred             ccccCCCCCCEEECCCCc--cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhcc
Confidence              4568999999999985  3222    2258999999999988  33345788999999999999998863 4456789


Q ss_pred             CCCCcEEEecCccchhH---hhhcCcccceEccccccchhhhc---ccCCCcceEEEecCCCC----cccccCCCCceEE
Q 009796          298 FPLLEDLSIISLETLER---IMISSNRLMHLEVYNCSGLNRIN---VDAPNLVSFDFEDNPIP----IVSTNAPCPLNVL  367 (525)
Q Consensus       298 ~~~Le~L~L~~c~~l~~---~~~~~~~L~~L~l~~c~~L~~l~---~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~  367 (525)
                      +++|+.|++.++.....   ....+++|+.|+++++..+..+.   ...++|+.|.++++.+.    ..+..+++|+.++
T Consensus       175 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  254 (477)
T 2id5_A          175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN  254 (477)
T ss_dssp             CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEE
T ss_pred             cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeE
Confidence            99999999998753211   12235789999999877654332   23458999999998764    2345789999999


Q ss_pred             EEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHH
Q 009796          368 FSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILL  447 (525)
Q Consensus       368 l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~  447 (525)
                      ++. +.+...    ....+..+++|+.|.|+.|.....  .|     . .+..+++|++|+|..|.+..         +.
T Consensus       255 Ls~-n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~--~~-----~-~~~~l~~L~~L~L~~N~l~~---------~~  312 (477)
T 2id5_A          255 LSY-NPISTI----EGSMLHELLRLQEIQLVGGQLAVV--EP-----Y-AFRGLNYLRVLNVSGNQLTT---------LE  312 (477)
T ss_dssp             CCS-SCCCEE----CTTSCTTCTTCCEEECCSSCCSEE--CT-----T-TBTTCTTCCEEECCSSCCSC---------CC
T ss_pred             CCC-CcCCcc----ChhhccccccCCEEECCCCccceE--CH-----H-HhcCcccCCEEECCCCcCce---------eC
Confidence            985 333222    223457889999999998876654  23     1 45678999999999884432         11


Q ss_pred             HhH-hhhccccceeec
Q 009796          448 DDL-FWIFYPKNLCLS  462 (525)
Q Consensus       448 ~~L-l~~~~l~~l~l~  462 (525)
                      ... -.++.+++|.+.
T Consensus       313 ~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          313 ESVFHSVGNLETLILD  328 (477)
T ss_dssp             GGGBSCGGGCCEEECC
T ss_pred             HhHcCCCcccCEEEcc
Confidence            122 234578999884

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.68  E-value=3e-16  Score=163.05  Aligned_cols=270  Identities=14%  Similarity=0.150  Sum_probs=172.7

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .++++|++..  +  ....++. +..+++|++|++++|.+...+.+.++++|++|++++|.+.+-  . .+..+++|++|
T Consensus        90 ~~L~~L~l~~--n--~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L  161 (466)
T 1o6v_A           90 TKLVDILMNN--N--QIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--S-ALSGLTSLQQL  161 (466)
T ss_dssp             TTCCEEECCS--S--CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCC--G-GGTTCTTCSEE
T ss_pred             ccCCEEECCC--C--ccccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCC--h-hhccCCcccEe
Confidence            5899998865  2  2334444 778999999999999988744488999999999999998432  2 26788999999


Q ss_pred             EEeecCCCceeecccCCCccEEEEeeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhh
Q 009796          214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFH  292 (525)
Q Consensus       214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~  292 (525)
                      ++.++. .....+..+++|+.|++++|. ..+.. ...+++|++|+++++.......++.+++|+.|+++++.+++.   
T Consensus       162 ~l~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---  236 (466)
T 1o6v_A          162 SFGNQV-TDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI---  236 (466)
T ss_dssp             EEEESC-CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---
T ss_pred             ecCCcc-cCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---
Confidence            986432 222335667888888888885 22221 125678888888887722222367778888888888777652   


Q ss_pred             hhhcCCCCCcEEEecCccchhHh-hhcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC--cccccCCCCceEE
Q 009796          293 PLISKFPLLEDLSIISLETLERI-MISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP--IVSTNAPCPLNVL  367 (525)
Q Consensus       293 ~ll~~~~~Le~L~L~~c~~l~~~-~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~--~~~~~~~~L~~l~  367 (525)
                      ..+..+++|+.|+++++...... ...+++|+.|+++++.  .+.. ....++|+.|.++++.+.  ..+..+++|+.++
T Consensus       237 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~  315 (466)
T 1o6v_A          237 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLT  315 (466)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEE
T ss_pred             hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEE
Confidence            23567778888888776432111 2235677777777643  2222 235567777777776553  2344577777777


Q ss_pred             EEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796          368 FSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL  434 (525)
Q Consensus       368 l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~  434 (525)
                      ++. +.+...    ..  +..+++|+.|.++.|.....   +       .+..+++|+.|.+..|..
T Consensus       316 L~~-n~l~~~----~~--~~~l~~L~~L~l~~n~l~~~---~-------~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          316 LYF-NNISDI----SP--VSSLTKLQRLFFYNNKVSDV---S-------SLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             CCS-SCCSCC----GG--GGGCTTCCEEECCSSCCCCC---G-------GGTTCTTCCEEECCSSCC
T ss_pred             CcC-CcCCCc----hh--hccCccCCEeECCCCccCCc---h-------hhccCCCCCEEeCCCCcc
Confidence            764 222211    11  45677777777776544332   1       344566777777776643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.67  E-value=5.8e-16  Score=164.26  Aligned_cols=180  Identities=13%  Similarity=0.074  Sum_probs=87.1

Q ss_pred             CCCccEEEeeCCCCChhhhh--hhhcCCCCCcEEEecCccch--h---HhhhcCcccceEccccccchhhhc---ccCCC
Q 009796          273 CPHLRKLVLFLPHFNDQEFH--PLISKFPLLEDLSIISLETL--E---RIMISSNRLMHLEVYNCSGLNRIN---VDAPN  342 (525)
Q Consensus       273 l~~L~~L~L~~~~~~~~~~~--~ll~~~~~Le~L~L~~c~~l--~---~~~~~~~~L~~L~l~~c~~L~~l~---~~~p~  342 (525)
                      +++|+.|+++++.+++....  ..+..+++|+.|+++++..-  .   .....+++|+.|+++++. +..+.   ...++
T Consensus       333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~  411 (549)
T 2z81_A          333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEK  411 (549)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTT
T ss_pred             CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhccccc
Confidence            44455555555554443221  11344455555555544321  0   112223455555555431 22211   12345


Q ss_pred             cceEEEecCCCC-cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCC
Q 009796          343 LVSFDFEDNPIP-IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQ  421 (525)
Q Consensus       343 L~~l~~~g~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~  421 (525)
                      |+.|.++++.+. +...-.++|+.++++. +.+.        .++..+++|++|+++.|...  . +|       ....+
T Consensus       412 L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~-N~l~--------~~~~~l~~L~~L~Ls~N~l~--~-ip-------~~~~l  472 (549)
T 2z81_A          412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSN-NNLD--------SFSLFLPRLQELYISRNKLK--T-LP-------DASLF  472 (549)
T ss_dssp             CCEEECTTSCCSCCCTTSCTTCSEEECCS-SCCS--------CCCCCCTTCCEEECCSSCCS--S-CC-------CGGGC
T ss_pred             ccEEECCCCCcccccchhcCCceEEECCC-CChh--------hhcccCChhcEEECCCCccC--c-CC-------CcccC
Confidence            555555555432 1111124566666653 2221        12357889999999987665  2 55       23457


Q ss_pred             cccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecCC-CCCchhhHHHHHHHhh
Q 009796          422 VESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPE-NWRYRPFVMWFYDHLQ  480 (525)
Q Consensus       422 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~~l~~l~l~~~-~~~~~~~~~~~~~~~~  480 (525)
                      ++|++|+|..|.+.+..        ...+-..+.++++.+..- .....+..+++..++.
T Consensus       473 ~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~  524 (549)
T 2z81_A          473 PVLLVMKISRNQLKSVP--------DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN  524 (549)
T ss_dssp             TTCCEEECCSSCCCCCC--------TTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred             ccCCEEecCCCccCCcC--------HHHHhcCcccCEEEecCCCccCCCccHHHHHHHHH
Confidence            89999999988543321        112334457888888433 1123444555544543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.67  E-value=5.5e-17  Score=174.30  Aligned_cols=82  Identities=16%  Similarity=0.089  Sum_probs=46.4

Q ss_pred             ccCCCccEEEEeeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhh-hhhhhcCCCCCcEE
Q 009796          227 SEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQE-FHPLISKFPLLEDL  304 (525)
Q Consensus       227 ~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~ll~~~~~Le~L  304 (525)
                      ..+++|+.|++.+|. ..++.+  .+++|++|+++++.......++.+++|+.|+++++.+++.. ....+.++++|++|
T Consensus       304 ~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L  381 (606)
T 3vq2_A          304 PKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL  381 (606)
T ss_dssp             CTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred             cccccCCEEEcccccCcccccC--CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence            345577777777776 333332  66777777777775222335556666777776666655421 12334555566666


Q ss_pred             EecCcc
Q 009796          305 SIISLE  310 (525)
Q Consensus       305 ~L~~c~  310 (525)
                      +++++.
T Consensus       382 ~L~~n~  387 (606)
T 3vq2_A          382 DLSFNG  387 (606)
T ss_dssp             ECCSCS
T ss_pred             ECCCCc
Confidence            665543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.67  E-value=1e-16  Score=172.94  Aligned_cols=170  Identities=10%  Similarity=0.124  Sum_probs=120.6

Q ss_pred             cCCeEEEEEeecCCCCccc-----------------CCcccc--CCCCccEEEecCCcCCC--CCCCCCCCcccEEEece
Q 009796          134 NGVKELDFEVITDKNSVNA-----------------LPQTIF--SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDE  192 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~-----------------lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~  192 (525)
                      .++++|+++.  +. ....                 +|..+.  .+++|++|+|++|.+.+  |..+.++++|++|+|++
T Consensus       206 ~~L~~L~Ls~--n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          206 TKLRQFYMGN--SP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC  282 (636)
T ss_dssp             TTCCEEEEES--CC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred             cCCCEEECcC--Cc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence            5899999987  22 2222                 899998  99999999999998877  78889999999999999


Q ss_pred             ee-echHHHHHHHhC------CcCccEEEEeecCCCcee----ecccCCCccEEEEeeec-c-ccceEEEeCCCccEEEe
Q 009796          193 VY-VNDQMVQSLVRE------CRVLEDLSFFYCFGLKRL----RISEAHKLKSLILRFTY-Q-ELESVEIAVPSLQQLEL  259 (525)
Q Consensus       193 ~~-~~~~~l~~ll~~------c~~Le~L~L~~c~~l~~l----~i~~l~~L~~L~l~~c~-~-~l~~~~~~~~~L~~L~l  259 (525)
                      |. ++...++..+..      +++|++|++++|... .+    .+..+++|+.|++++|. . .++ ....+++|+.|++
T Consensus       283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L  360 (636)
T 4eco_A          283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL  360 (636)
T ss_dssp             CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred             CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence            98 665345554544      499999999998654 33    24577889999998886 2 333 2225677788888


Q ss_pred             cccc-ccceeeccCCCC-ccEEEeeCCCCChhhhhhhhcCC--CCCcEEEecCcc
Q 009796          260 SFSR-VPRLLDVAECPH-LRKLVLFLPHFNDQEFHPLISKF--PLLEDLSIISLE  310 (525)
Q Consensus       260 ~~~~-~~~~~~~~~l~~-L~~L~L~~~~~~~~~~~~ll~~~--~~Le~L~L~~c~  310 (525)
                      +++. ...+..++.+++ |+.|+++++.++.  ++..+...  ++|+.|+++++.
T Consensus       361 ~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~  413 (636)
T 4eco_A          361 AYNQITEIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNE  413 (636)
T ss_dssp             CSSEEEECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSC
T ss_pred             CCCccccccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCCc
Confidence            7776 444455667777 7777777777663  33333332  256666666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.66  E-value=8.5e-17  Score=172.29  Aligned_cols=341  Identities=15%  Similarity=0.064  Sum_probs=206.9

Q ss_pred             ccceEEEEEeeccc------cCCchhHHHHHHHHHH--cCCeEEEEEeecCCCCcccCCccccC-CCC-ccEEEecCCc-
Q 009796          104 PMQKLRISVSLLEV------KESSPLFDKWVELAME--NGVKELDFEVITDKNSVNALPQTIFS-AKL-LTSLKLFGCK-  172 (525)
Q Consensus       104 ~l~~l~l~~~~~~~------~~~~~~~~~wl~~~~~--~~l~~L~l~~~~~~~~~~~lp~~l~~-~~~-L~~L~L~~~~-  172 (525)
                      .++++.+.....-.      .........|+.....  +++++|++..  +.. ....+..+.. +++ |++|+|++|. 
T Consensus        74 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~--~~i-~~~~~~~l~~~~~~~L~~L~L~~~~~  150 (592)
T 3ogk_B           74 NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRR--MIV-SDLDLDRLAKARADDLETLKLDKCSG  150 (592)
T ss_dssp             TCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEES--CBC-CHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred             CCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeec--cEe-cHHHHHHHHHhccccCcEEECcCCCC
Confidence            47777775421100      0122334556665543  4788888875  211 1111222222 344 8888888875 


Q ss_pred             CCC---CCCCCCCCcccEEEeceeeechH---HHHHHHhCCcCccEEEEeecCCC--c--eee--cccCCCccEEEEeee
Q 009796          173 LEQ---PSHCANLQSLKKLSLDEVYVNDQ---MVQSLVRECRVLEDLSFFYCFGL--K--RLR--ISEAHKLKSLILRFT  240 (525)
Q Consensus       173 l~~---~~~~~~l~~L~~L~L~~~~~~~~---~l~~ll~~c~~Le~L~L~~c~~l--~--~l~--i~~l~~L~~L~l~~c  240 (525)
                      +..   .....+|++|++|+|++|.+++.   .+..+..++++|++|++++|..-  .  .+.  +.++++|+.|++.+|
T Consensus       151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~  230 (592)
T 3ogk_B          151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF  230 (592)
T ss_dssp             EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred             cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence            221   22334688888888888877332   26677788888888888777542  1  111  235788999998888


Q ss_pred             c-cccceEEEeCCCccEEEecccc-----ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchh-
Q 009796          241 Y-QELESVEIAVPSLQQLELSFSR-----VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLE-  313 (525)
Q Consensus       241 ~-~~l~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~-  313 (525)
                      . ..+......+++|++|.+++..     ......++.+++|+.|.+..+.  ...+..++..+++|++|+|++|. +. 
T Consensus       231 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~Ls~~~-l~~  307 (592)
T 3ogk_B          231 EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKLDLLYAL-LET  307 (592)
T ss_dssp             BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEEEETTCC-CCH
T ss_pred             cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhhcCCCcEEecCCCc-CCH
Confidence            6 3344334467889998887543     1233466788899999887643  33367778899999999999987 32 


Q ss_pred             ----HhhhcCcccceEcccccc---chhhhcccCCCcceEEEe-c---------CC-CC----cc-cccCCCCceEEEEe
Q 009796          314 ----RIMISSNRLMHLEVYNCS---GLNRINVDAPNLVSFDFE-D---------NP-IP----IV-STNAPCPLNVLFSN  370 (525)
Q Consensus       314 ----~~~~~~~~L~~L~l~~c~---~L~~l~~~~p~L~~l~~~-g---------~~-~~----~~-~~~~~~L~~l~l~~  370 (525)
                          .+...+++|+.|++..+-   .+..+...+++|+.|++. |         +. +.    .. ...+++|+.+++..
T Consensus       308 ~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~  387 (592)
T 3ogk_B          308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV  387 (592)
T ss_dssp             HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred             HHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence                223457899999998532   234454568999999999 3         32 22    11 12489999999953


Q ss_pred             eecCChhccccHHHHHHhccccceEEEEEE----eeeeeeeecccc-ccCCCCCCCcccceEEEEEeeeccCCCchhHHH
Q 009796          371 FGDIDTHWYLNLMEFIGAFNQIGELHLSLN----YKQVLFNIDEFR-SCHPSLPLQVESLSLFMESFSLYMDVVPSEYEI  445 (525)
Q Consensus       371 ~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~----~~~~~~~lp~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~  445 (525)
                       ..+..   ..+..+..++++|++|+++.+    ....   .|.+. ... .+..+++|++|.|..+.-.  ..   ..+
T Consensus       388 -~~l~~---~~~~~l~~~~~~L~~L~l~~~~~~n~l~~---~p~~~~~~~-~~~~~~~L~~L~L~~~~~~--l~---~~~  454 (592)
T 3ogk_B          388 -SDITN---ESLESIGTYLKNLCDFRLVLLDREERITD---LPLDNGVRS-LLIGCKKLRRFAFYLRQGG--LT---DLG  454 (592)
T ss_dssp             -SCCCH---HHHHHHHHHCCSCCEEEEEECSCCSCCSS---CCCHHHHHH-HHHHCTTCCEEEEECCGGG--CC---HHH
T ss_pred             -CCccH---HHHHHHHhhCCCCcEEEEeecCCCccccC---chHHHHHHH-HHHhCCCCCEEEEecCCCC--cc---HHH
Confidence             33333   234455567999999999843    2221   11000 000 1334789999999764100  11   222


Q ss_pred             HHHhHhhhccccceeecC
Q 009796          446 LLDDLFWIFYPKNLCLSP  463 (525)
Q Consensus       446 ~~~~Ll~~~~l~~l~l~~  463 (525)
                      +....-.++.+++|.+..
T Consensus       455 ~~~~~~~~~~L~~L~L~~  472 (592)
T 3ogk_B          455 LSYIGQYSPNVRWMLLGY  472 (592)
T ss_dssp             HHHHHHSCTTCCEEEECS
T ss_pred             HHHHHHhCccceEeeccC
Confidence            222222356799999953

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.66  E-value=1.3e-16  Score=171.39  Aligned_cols=148  Identities=24%  Similarity=0.270  Sum_probs=61.7

Q ss_pred             CCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee---cccCCCccE
Q 009796          159 SAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKLKS  234 (525)
Q Consensus       159 ~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~---i~~l~~L~~  234 (525)
                      .+++|++|++++|.+.. |..+..+++|++|++++|.+... .+..+..+++|++|++++|.....+.   +..+++|+.
T Consensus       276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  354 (606)
T 3t6q_A          276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE  354 (606)
T ss_dssp             TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred             cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence            34455555555554444 34444445555555555444211 11223444555555554443221111   223444555


Q ss_pred             EEEeeeccccceEE------EeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEe
Q 009796          235 LILRFTYQELESVE------IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI  306 (525)
Q Consensus       235 L~l~~c~~~l~~~~------~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L  306 (525)
                      |++++|.  +..+.      ..+++|++|+++++.  ...+..++.+++|+.|+++++.+++......+.++++|+.|++
T Consensus       355 L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  432 (606)
T 3t6q_A          355 LDLSHDD--IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL  432 (606)
T ss_dssp             EECCSSC--CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred             EECCCCc--cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence            5554443  11111      124444555544444  1122234444445555554444433222223344444555554


Q ss_pred             cCc
Q 009796          307 ISL  309 (525)
Q Consensus       307 ~~c  309 (525)
                      +++
T Consensus       433 ~~n  435 (606)
T 3t6q_A          433 SHS  435 (606)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.65  E-value=1.5e-16  Score=170.97  Aligned_cols=257  Identities=15%  Similarity=0.089  Sum_probs=185.0

Q ss_pred             ccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEE
Q 009796          157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI  236 (525)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~  236 (525)
                      +..+++|+.|+++++.+...+.+..+++|++|++++|.+.  .++.+  .+++|++|++++|.......+..+++|+.|+
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  356 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD  356 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence            5567899999999998877337788899999999999872  23433  8899999999999777777777889999999


Q ss_pred             EeeeccccceE------EEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCc
Q 009796          237 LRFTYQELESV------EIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL  309 (525)
Q Consensus       237 l~~c~~~l~~~------~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c  309 (525)
                      +++|.  +..+      ...+++|++|++++|. ...+..+..+++|+.|+++++.+++......+.++++|+.|+++++
T Consensus       357 ls~n~--l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          357 LSRNA--LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             CCSSC--EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred             CcCCc--cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence            99885  2222      1267899999999988 4445678889999999999988877533356788999999999988


Q ss_pred             cchhH---hhhcCcccceEccccccchh----hhcccCCCcceEEEecCCCC----cccccCCCCceEEEEeeecCChhc
Q 009796          310 ETLER---IMISSNRLMHLEVYNCSGLN----RINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHW  378 (525)
Q Consensus       310 ~~l~~---~~~~~~~L~~L~l~~c~~L~----~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~  378 (525)
                      .....   ....+++|+.|+++++.--.    ......++|+.|.++++.+.    ..+..+++|+.++++. +.+..  
T Consensus       435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~--  511 (606)
T 3vq2_A          435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH-NNLLF--  511 (606)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSC--
T ss_pred             CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC-CcCCC--
Confidence            64322   22345788899888864221    12235678888888887653    3445678888888874 22222  


Q ss_pred             cccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCc-ccceEEEEEee
Q 009796          379 YLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQV-ESLSLFMESFS  433 (525)
Q Consensus       379 ~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~-~L~~L~L~~~~  433 (525)
                        ..+..+..+++|++|+++.|....   +|+      .+..++ +|++|.+.+|.
T Consensus       512 --~~~~~~~~l~~L~~L~l~~N~l~~---~p~------~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          512 --LDSSHYNQLYSLSTLDCSFNRIET---SKG------ILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             --EEGGGTTTCTTCCEEECTTSCCCC---EES------CGGGSCTTCCEEECCSCC
T ss_pred             --cCHHHccCCCcCCEEECCCCcCcc---cCH------hHhhhcccCcEEEccCCC
Confidence              233455778888888888776652   442      234454 58888888873

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=2.4e-16  Score=173.86  Aligned_cols=171  Identities=12%  Similarity=0.095  Sum_probs=121.5

Q ss_pred             cCCeEEEEEeecCCCCcc----------------cCCcccc--CCCCccEEEecCCcCCC--CCCCCCCCcccEEEecee
Q 009796          134 NGVKELDFEVITDKNSVN----------------ALPQTIF--SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEV  193 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~  193 (525)
                      .+++.|+++.  +.....                .+|..+.  .+++|++|+|++|.+.+  |..+.++++|++|+|++|
T Consensus       448 ~~L~~L~Ls~--N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          448 TKLQIIYFAN--SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             TTCCEEEEES--CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             CCCCEEECcC--CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            4899999987  222210                2888887  89999999999998776  778899999999999999


Q ss_pred             e-echHHHHHHHh-------CCcCccEEEEeecCCCceee----cccCCCccEEEEeeec-cccceEEEeCCCccEEEec
Q 009796          194 Y-VNDQMVQSLVR-------ECRVLEDLSFFYCFGLKRLR----ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELS  260 (525)
Q Consensus       194 ~-~~~~~l~~ll~-------~c~~Le~L~L~~c~~l~~l~----i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~  260 (525)
                      . ++...++..+.       .+|+|++|+|++|... .++    +..+++|+.|++++|. ..++ ....+++|+.|+++
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD  603 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence            8 65423444344       4559999999998754 432    4567889999998886 3233 11257788888888


Q ss_pred             ccc-ccceeeccCCCC-ccEEEeeCCCCChhhhhhhhcCCC--CCcEEEecCcc
Q 009796          261 FSR-VPRLLDVAECPH-LRKLVLFLPHFNDQEFHPLISKFP--LLEDLSIISLE  310 (525)
Q Consensus       261 ~~~-~~~~~~~~~l~~-L~~L~L~~~~~~~~~~~~ll~~~~--~Le~L~L~~c~  310 (525)
                      +|. ...+..+..+++ |+.|+|++|.++.  ++..+...+  +|+.|+|+++.
T Consensus       604 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~  655 (876)
T 4ecn_A          604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNK  655 (876)
T ss_dssp             SSCCSCCCTTSCEECTTCCEEECCSSCCCS--CCSCCCTTCSSCEEEEECCSSC
T ss_pred             CCccccchHHHhhccccCCEEECcCCCCCc--CchhhhccccCCCCEEECcCCc
Confidence            887 545556777787 8888888887763  344444433  36666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.64  E-value=3.4e-17  Score=169.79  Aligned_cols=320  Identities=16%  Similarity=0.128  Sum_probs=202.5

Q ss_pred             HHHcCCeEEEEEeecCCCCc---ccCCccccCCCCccEEEecCCcCCC--C-CCCCCCC----cccEEEeceeeech---
Q 009796          131 AMENGVKELDFEVITDKNSV---NALPQTIFSAKLLTSLKLFGCKLEQ--P-SHCANLQ----SLKKLSLDEVYVND---  197 (525)
Q Consensus       131 ~~~~~l~~L~l~~~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~l~~--~-~~~~~l~----~L~~L~L~~~~~~~---  197 (525)
                      ...+++++|++..  +....   ..++..+..+++|++|+|++|.+..  + .....++    +|++|+|++|.+++   
T Consensus        25 ~~~~~L~~L~L~~--~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~  102 (461)
T 1z7x_W           25 PLLQQCQVVRLDD--CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  102 (461)
T ss_dssp             HHHTTCSEEEEES--SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             hhcCCccEEEccC--CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence            3446899999886  22221   2456667778999999999988754  1 1223344    79999999998854   


Q ss_pred             HHHHHHHhCCcCccEEEEeecCCCce----ee---cccCCCccEEEEeeec-cc-----cceEEEeCCCccEEEecccc-
Q 009796          198 QMVQSLVRECRVLEDLSFFYCFGLKR----LR---ISEAHKLKSLILRFTY-QE-----LESVEIAVPSLQQLELSFSR-  263 (525)
Q Consensus       198 ~~l~~ll~~c~~Le~L~L~~c~~l~~----l~---i~~l~~L~~L~l~~c~-~~-----l~~~~~~~~~L~~L~l~~~~-  263 (525)
                      ..+...+..+++|++|++++|.....    +.   ....++|++|++++|. ..     +......+++|++|+++++. 
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence            35667788899999999998874211    10   1123579999998886 11     11111246899999999887 


Q ss_pred             -ccceeecc-----CCCCccEEEeeCCCCChhh---hhhhhcCCCCCcEEEecCccchhHh---------hhcCcccceE
Q 009796          264 -VPRLLDVA-----ECPHLRKLVLFLPHFNDQE---FHPLISKFPLLEDLSIISLETLERI---------MISSNRLMHL  325 (525)
Q Consensus       264 -~~~~~~~~-----~l~~L~~L~L~~~~~~~~~---~~~ll~~~~~Le~L~L~~c~~l~~~---------~~~~~~L~~L  325 (525)
                       ......+.     ..++|+.|+++++.+++..   +...+..+++|++|+++++.. +..         ...+++|++|
T Consensus       183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~~~~~~~~L~~L  261 (461)
T 1z7x_W          183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL-GDVGMAELCPGLLHPSSRLRTL  261 (461)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEE
T ss_pred             chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC-ChHHHHHHHHHHhcCCCCceEE
Confidence             11111121     3568999999988887753   455567789999999998752 221         1135789999


Q ss_pred             ccccccchh--------hhcccCCCcceEEEecCCCC----cccc-----cCCCCceEEEEeeecCChhccccHHHHHHh
Q 009796          326 EVYNCSGLN--------RINVDAPNLVSFDFEDNPIP----IVST-----NAPCPLNVLFSNFGDIDTHWYLNLMEFIGA  388 (525)
Q Consensus       326 ~l~~c~~L~--------~l~~~~p~L~~l~~~g~~~~----~~~~-----~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~  388 (525)
                      ++++|. +.        ......++|+.|+++++.+.    ..+.     +.++|+.++++. +.+.......+...+..
T Consensus       262 ~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~  339 (461)
T 1z7x_W          262 WIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS-CSFTAACCSHFSSVLAQ  339 (461)
T ss_dssp             ECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCBGGGHHHHHHHHHH
T ss_pred             ECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC-CCCchHHHHHHHHHHhh
Confidence            998873 21        11224688999999888653    0111     236889999875 33443333345666778


Q ss_pred             ccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeec
Q 009796          389 FNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLS  462 (525)
Q Consensus       389 l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~~l~~l~l~  462 (525)
                      +++|++|+++.|...... + ..+... .....++|++|.|.+|..    .......+...+-.++.++++.+.
T Consensus       340 ~~~L~~L~Ls~n~i~~~~-~-~~l~~~-l~~~~~~L~~L~L~~n~i----~~~~~~~l~~~l~~~~~L~~L~l~  406 (461)
T 1z7x_W          340 NRFLLELQISNNRLEDAG-V-RELCQG-LGQPGSVLRVLWLADCDV----SDSSCSSLAATLLANHSLRELDLS  406 (461)
T ss_dssp             CSSCCEEECCSSBCHHHH-H-HHHHHH-HTSTTCCCCEEECTTSCC----CHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             CCCccEEEccCCcccccc-H-HHHHHH-HcCCCCceEEEECCCCCC----ChhhHHHHHHHHHhCCCccEEECC
Confidence            899999998877654431 1 111111 001256888888887732    222233455566666788888883

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.63  E-value=3.6e-16  Score=167.98  Aligned_cols=268  Identities=19%  Similarity=0.182  Sum_probs=184.8

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le  211 (525)
                      .++++|++..    .....+|..+..+++|++|++++|.+..  +..+..+++|++|++++|.+........+..+++|+
T Consensus       278 ~~L~~L~l~~----n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          278 SGLQELDLTA----THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             TTCSEEECTT----SCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             cCCCEEeccC----CccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence            4788888765    2334788889999999999999999887  567889999999999999764222233467899999


Q ss_pred             EEEEeecCCCcee----ecccCCCccEEEEeeeccccceE----EEeCCCccEEEecccc--cc-ceeeccCCCCccEEE
Q 009796          212 DLSFFYCFGLKRL----RISEAHKLKSLILRFTYQELESV----EIAVPSLQQLELSFSR--VP-RLLDVAECPHLRKLV  280 (525)
Q Consensus       212 ~L~L~~c~~l~~l----~i~~l~~L~~L~l~~c~~~l~~~----~~~~~~L~~L~l~~~~--~~-~~~~~~~l~~L~~L~  280 (525)
                      +|++++|......    .+..+++|+.|++++|.  +..+    ...+++|++|+++++.  .. .+..++.+++|+.|+
T Consensus       354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  431 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN  431 (606)
T ss_dssp             EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS--CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred             EEECCCCccccccCcchhcccCCCCCEEECCCCc--CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence            9999998754332    35578999999999985  3222    1257999999999998  22 233488999999999


Q ss_pred             eeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCC----Ccc
Q 009796          281 LFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPI----PIV  356 (525)
Q Consensus       281 L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~----~~~  356 (525)
                      ++++.+++. ....+.++++|++|+++++...... ....              ......++|+.|.++++.+    |..
T Consensus       432 l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~--------------~~~~~l~~L~~L~Ls~n~l~~~~~~~  495 (606)
T 3t6q_A          432 LSHSLLDIS-SEQLFDGLPALQHLNLQGNHFPKGN-IQKT--------------NSLQTLGRLEILVLSFCDLSSIDQHA  495 (606)
T ss_dssp             CTTCCCBTT-CTTTTTTCTTCCEEECTTCBCGGGE-ECSS--------------CGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred             CCCCccCCc-CHHHHhCCCCCCEEECCCCCCCccc-cccc--------------hhhccCCCccEEECCCCccCccChhh
Confidence            999998764 4556788999999999997532210 0000              0001233444444444433    234


Q ss_pred             cccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeecc
Q 009796          357 STNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYM  436 (525)
Q Consensus       357 ~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~  436 (525)
                      +..+++|+.+++++ +.+..    .....+.++++| .|+++.|.....  .| .     .+..+++|+.|.|.+|....
T Consensus       496 ~~~l~~L~~L~Ls~-N~l~~----~~~~~l~~l~~L-~L~L~~N~l~~~--~~-~-----~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          496 FTSLKMMNHVDLSH-NRLTS----SSIEALSHLKGI-YLNLASNHISII--LP-S-----LLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             TTTCTTCCEEECCS-SCCCG----GGGGGGTTCCSC-EEECCSSCCCCC--CG-G-----GHHHHHTSSEEECTTCCEEC
T ss_pred             hccccCCCEEECCC-CccCc----CChhHhCccccc-EEECcCCccccc--CH-h-----hcccCCCCCEEeCCCCCccc
Confidence            55678889999874 33322    233455677788 788887766542  22 1     23457889999999885544


Q ss_pred             C
Q 009796          437 D  437 (525)
Q Consensus       437 ~  437 (525)
                      +
T Consensus       562 ~  562 (606)
T 3t6q_A          562 T  562 (606)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.63  E-value=3.7e-16  Score=158.49  Aligned_cols=268  Identities=15%  Similarity=0.097  Sum_probs=148.1

Q ss_pred             cCCeEEEEEeecCCCCcccCC-ccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796          134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L  210 (525)
                      +++++|++..  +  ....++ ..+..+++|++|+|++|.+..  +..+.++++|++|+|++|.++. ....++.++++|
T Consensus        69 ~~L~~L~L~~--n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L  143 (390)
T 3o6n_A           69 RQVELLNLND--L--QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKL  143 (390)
T ss_dssp             CCCSEEECTT--S--CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             ccCcEEECCC--C--cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCC
Confidence            4667666643  1  122233 345566777777777776665  3345667777777777776631 112234566777


Q ss_pred             cEEEEeecCCCce--eecccCCCccEEEEeeeccccceEEE-eCCCccEEEeccccccceeeccCCCCccEEEeeCCCCC
Q 009796          211 EDLSFFYCFGLKR--LRISEAHKLKSLILRFTYQELESVEI-AVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFN  287 (525)
Q Consensus       211 e~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~  287 (525)
                      ++|++++|.....  -.+..+++|+.|++++|.  +..+.. .+++|+.|+++++...   .+...++|+.|+++++.++
T Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~L~~L~l~~n~l~  218 (390)
T 3o6n_A          144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLLS---TLAIPIAVEELDASHNSIN  218 (390)
T ss_dssp             CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBCCGGGCTTCSEEECCSSCCS---EEECCSSCSEEECCSSCCC
T ss_pred             cEEECCCCccCccChhhccCCCCCCEEECCCCc--CCccccccccccceeeccccccc---ccCCCCcceEEECCCCeee
Confidence            7777776643221  123455677777777664  222222 3567777777666511   2234456777777777665


Q ss_pred             hhhhhhhhcCCCCCcEEEecCccchhH-hhhcCcccceEccccccc--h-hhhcccCCCcceEEEecCCCC---cccccC
Q 009796          288 DQEFHPLISKFPLLEDLSIISLETLER-IMISSNRLMHLEVYNCSG--L-NRINVDAPNLVSFDFEDNPIP---IVSTNA  360 (525)
Q Consensus       288 ~~~~~~ll~~~~~Le~L~L~~c~~l~~-~~~~~~~L~~L~l~~c~~--L-~~l~~~~p~L~~l~~~g~~~~---~~~~~~  360 (525)
                      ..  .  ....++|+.|+++++..... ....+++|+.|+++++.-  + .......++|+.|.++++.+.   .....+
T Consensus       219 ~~--~--~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l  294 (390)
T 3o6n_A          219 VV--R--GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI  294 (390)
T ss_dssp             EE--E--CCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCC
T ss_pred             ec--c--ccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCC
Confidence            52  1  12346777777777643111 112346777777776531  1 111234567777777776553   222346


Q ss_pred             CCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796          361 PCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (525)
Q Consensus       361 ~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~  432 (525)
                      ++|+.++++. +.+..     +...+..+++|+.|+++.|.....           .+..+++|+.|.|.+|
T Consensus       295 ~~L~~L~L~~-n~l~~-----~~~~~~~l~~L~~L~L~~N~i~~~-----------~~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          295 PTLKVLDLSH-NHLLH-----VERNQPQFDRLENLYLDHNSIVTL-----------KLSTHHTLKNLTLSHN  349 (390)
T ss_dssp             TTCCEEECCS-SCCCC-----CGGGHHHHTTCSEEECCSSCCCCC-----------CCCTTCCCSEEECCSS
T ss_pred             CCCCEEECCC-Cccee-----cCccccccCcCCEEECCCCcccee-----------CchhhccCCEEEcCCC
Confidence            7777777764 22221     222245667777777776654321           2445667777777766

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.63  E-value=1.1e-15  Score=151.17  Aligned_cols=148  Identities=22%  Similarity=0.264  Sum_probs=115.3

Q ss_pred             CCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee--ecccCCCccEEE
Q 009796          160 AKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLI  236 (525)
Q Consensus       160 ~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l--~i~~l~~L~~L~  236 (525)
                      .++++.|+|++|.+.. +..+..+++|++|+|++|.+.  .++..+..+++|++|+|++|... .+  .+.++++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            4789999999999988 777888999999999999885  35556788999999999999653 33  255789999999


Q ss_pred             Eeeec--cccceEE---------EeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEE
Q 009796          237 LRFTY--QELESVE---------IAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL  304 (525)
Q Consensus       237 l~~c~--~~l~~~~---------~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L  304 (525)
                      +++|.  ..++...         ..+++|++|++++|. ...+..++.+++|+.|++++|.+++  +...+.++++|+.|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEE
Confidence            99986  2222111         148889999998887 5555678888889999998888875  44456788888888


Q ss_pred             EecCccch
Q 009796          305 SIISLETL  312 (525)
Q Consensus       305 ~L~~c~~l  312 (525)
                      ++++|...
T Consensus       235 ~Ls~n~~~  242 (328)
T 4fcg_A          235 DLRGCTAL  242 (328)
T ss_dssp             ECTTCTTC
T ss_pred             ECcCCcch
Confidence            88886543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.62  E-value=6.9e-17  Score=173.04  Aligned_cols=245  Identities=20%  Similarity=0.228  Sum_probs=143.5

Q ss_pred             hhHHHHHHHHHH--cCCeEEEEEeecCCCCcccCCcccc-CCCCccEEEecCC-cCCC---CCCCCCCCcccEEEeceee
Q 009796          122 PLFDKWVELAME--NGVKELDFEVITDKNSVNALPQTIF-SAKLLTSLKLFGC-KLEQ---PSHCANLQSLKKLSLDEVY  194 (525)
Q Consensus       122 ~~~~~wl~~~~~--~~l~~L~l~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~-~l~~---~~~~~~l~~L~~L~L~~~~  194 (525)
                      ..+..|+.....  +++++|++..  +.. ....+..+. .+++|++|+|++| .+..   +....++++|++|+|++|.
T Consensus        91 ~~~~~~l~~l~~~~~~L~~L~L~~--~~~-~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B           91 GYVYPWIEAMSSSYTWLEEIRLKR--MVV-TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             CBCHHHHHHHHHHCTTCCEEEEES--CBC-CHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             chhhHHHHHHHHhCCCCCeEEeeC--cEE-cHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            344566665543  3788888775  211 111222232 5778888888877 3332   2233467888888888777


Q ss_pred             ech---HHHHHHHhCCcCccEEEEeecC-CCceee----cccCCCccEEEEeeec--cccceEEEeCCCccEEEecccc-
Q 009796          195 VND---QMVQSLVRECRVLEDLSFFYCF-GLKRLR----ISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR-  263 (525)
Q Consensus       195 ~~~---~~l~~ll~~c~~Le~L~L~~c~-~l~~l~----i~~l~~L~~L~l~~c~--~~l~~~~~~~~~L~~L~l~~~~-  263 (525)
                      +++   ..+..+...|++|++|++++|. .+..-.    +.++++|++|++.+|.  ..+..+...+++|++|.+.++. 
T Consensus       168 i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  247 (594)
T 2p1m_B          168 VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA  247 (594)
T ss_dssp             EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC
T ss_pred             cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC
Confidence            632   2344455577788888887775 121111    1235888888888774  1222222245666666543321 


Q ss_pred             -------------------------------ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc-
Q 009796          264 -------------------------------VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET-  311 (525)
Q Consensus       264 -------------------------------~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~-  311 (525)
                                                     ...+..+..+++|+.|+++++.+++..+..++.++++|++|++.+|.. 
T Consensus       248 ~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~  327 (594)
T 2p1m_B          248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIED  327 (594)
T ss_dssp             CCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHH
T ss_pred             ccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCH
Confidence                                           111222235788999999888888877777788899999999998732 


Q ss_pred             --hhHhhhcCcccceEcccc--------ccch-----hhhcccCCCcceEEEecCCCC----cccc-cCCCCceEEEE
Q 009796          312 --LERIMISSNRLMHLEVYN--------CSGL-----NRINVDAPNLVSFDFEDNPIP----IVST-NAPCPLNVLFS  369 (525)
Q Consensus       312 --l~~~~~~~~~L~~L~l~~--------c~~L-----~~l~~~~p~L~~l~~~g~~~~----~~~~-~~~~L~~l~l~  369 (525)
                        +..+...+++|+.|++..        |..+     ..+...+|+|+.|.+..+.+.    ..+. .+++|+.+++.
T Consensus       328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence              222333478888888833        3333     223334677777765555443    1111 36677777776

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.61  E-value=5.9e-16  Score=160.21  Aligned_cols=288  Identities=12%  Similarity=0.060  Sum_probs=183.3

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--C--CCCCCCCcccEEEeceeeechHHHHHHHhCCcC
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--P--SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV  209 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~  209 (525)
                      .++++|+++.  + ......|..+..+++|++|+|++|.+..  +  ..+..+++|++|+|++|.+.......++.++++
T Consensus        79 ~~L~~L~Ls~--n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  155 (455)
T 3v47_A           79 SSLIILKLDY--N-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR  155 (455)
T ss_dssp             TTCCEEECTT--C-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred             ccCCEEeCCC--C-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence            5789998865  2 2233446778889999999999999986  3  337889999999999999854322344788999


Q ss_pred             ccEEEEeecCCCcee--ecccC--CCccEEEEeeec-cccceE---------EEeCCCccEEEecccc--ccceeecc--
Q 009796          210 LEDLSFFYCFGLKRL--RISEA--HKLKSLILRFTY-QELESV---------EIAVPSLQQLELSFSR--VPRLLDVA--  271 (525)
Q Consensus       210 Le~L~L~~c~~l~~l--~i~~l--~~L~~L~l~~c~-~~l~~~---------~~~~~~L~~L~l~~~~--~~~~~~~~--  271 (525)
                      |++|++++|......  .+..+  ++|+.|++++|. ..+...         ....++|++|+++++.  ...+..+.  
T Consensus       156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  235 (455)
T 3v47_A          156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA  235 (455)
T ss_dssp             CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred             ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence            999999998642211  12222  678888888775 221111         1134678888888886  22222222  


Q ss_pred             -CCCCccEEEeeCCCCChhhhh---------hhh--cCCCCCcEEEecCccchh---HhhhcCcccceEccccccc--h-
Q 009796          272 -ECPHLRKLVLFLPHFNDQEFH---------PLI--SKFPLLEDLSIISLETLE---RIMISSNRLMHLEVYNCSG--L-  333 (525)
Q Consensus       272 -~l~~L~~L~L~~~~~~~~~~~---------~ll--~~~~~Le~L~L~~c~~l~---~~~~~~~~L~~L~l~~c~~--L-  333 (525)
                       ..++|+.|+++++...+..+.         ..+  ...++|+.|+++++....   .....+++|+.|+++++.-  + 
T Consensus       236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  315 (455)
T 3v47_A          236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID  315 (455)
T ss_dssp             TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence             236677777766543321110         001  123577777777764321   1122346777777776431  1 


Q ss_pred             hhhcccCCCcceEEEecCCCC----cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeec
Q 009796          334 NRINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNID  409 (525)
Q Consensus       334 ~~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp  409 (525)
                      .......++|+.|.++++.+.    ..+.++++|+.+++++ +.+..    .....+..+++|++|+++.|....   +|
T Consensus       316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~---~~  387 (455)
T 3v47_A          316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY-NHIRA----LGDQSFLGLPNLKELALDTNQLKS---VP  387 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS-SCCCE----ECTTTTTTCTTCCEEECCSSCCSC---CC
T ss_pred             hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC-Ccccc----cChhhccccccccEEECCCCcccc---CC
Confidence            111234678888888887663    3455689999999985 33322    223456789999999999877664   33


Q ss_pred             cccccCCCCCCCcccceEEEEEeeeccC
Q 009796          410 EFRSCHPSLPLQVESLSLFMESFSLYMD  437 (525)
Q Consensus       410 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~  437 (525)
                      +.     .+..+++|++|.|.+|....+
T Consensus       388 ~~-----~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          388 DG-----IFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             TT-----TTTTCTTCCEEECCSSCBCCC
T ss_pred             Hh-----HhccCCcccEEEccCCCcccC
Confidence            21     346689999999999866655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=5.8e-16  Score=170.81  Aligned_cols=279  Identities=10%  Similarity=0.040  Sum_probs=187.5

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCc-CCC---CC-------CCCCCCcccEEEeceeeechHHHHH
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCK-LEQ---PS-------HCANLQSLKKLSLDEVYVNDQMVQS  202 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~---~~-------~~~~l~~L~~L~L~~~~~~~~~l~~  202 (525)
                      .+++.|++..   ......+|..+..+++|+.|+|++|. +.+   |.       .+..+++|++|+|++|.+.  .++.
T Consensus       491 ~~L~~L~Ls~---N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~  565 (876)
T 4ecn_A          491 KDLTDVELYN---CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPA  565 (876)
T ss_dssp             TTCCEEEEES---CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCC
T ss_pred             CCCCEEECcC---CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCC
Confidence            5899999986   23356789899999999999999997 653   33       3345669999999999986  3555


Q ss_pred             --HHhCCcCccEEEEeecCCCcee-ecccCCCccEEEEeeec-cccceEEEeCCC-ccEEEecccc-ccceeeccCCC--
Q 009796          203 --LVRECRVLEDLSFFYCFGLKRL-RISEAHKLKSLILRFTY-QELESVEIAVPS-LQQLELSFSR-VPRLLDVAECP--  274 (525)
Q Consensus       203 --ll~~c~~Le~L~L~~c~~l~~l-~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~-L~~L~l~~~~-~~~~~~~~~l~--  274 (525)
                        .+.++++|++|+|++|... .+ .+..+++|+.|++++|. ..++.....+++ |+.|++++|. ...+..+..++  
T Consensus       566 ~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~  644 (876)
T 4ecn_A          566 SASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY  644 (876)
T ss_dssp             HHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred             hhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence              7889999999999998753 33 45567899999999986 322222235677 9999999988 44455555554  


Q ss_pred             CccEEEeeCCCCChhhhhhh---hc--CCCCCcEEEecCccch--hH-hhhcCcccceEccccccchhhhcc--------
Q 009796          275 HLRKLVLFLPHFNDQEFHPL---IS--KFPLLEDLSIISLETL--ER-IMISSNRLMHLEVYNCSGLNRINV--------  338 (525)
Q Consensus       275 ~L~~L~L~~~~~~~~~~~~l---l~--~~~~Le~L~L~~c~~l--~~-~~~~~~~L~~L~l~~c~~L~~l~~--------  338 (525)
                      +|+.|++++|.+++. ++.+   +.  .+++|+.|+|+++...  .. +...+++|+.|+++++. +..+..        
T Consensus       645 ~L~~L~Ls~N~l~g~-ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~  722 (876)
T 4ecn_A          645 VMGSVDFSYNKIGSE-GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDG  722 (876)
T ss_dssp             CEEEEECCSSCTTTT-SSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTS
T ss_pred             CCCEEECcCCcCCCc-cccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccc
Confidence            488999988888763 2211   11  3457888888876532  11 12245778888887742 222221        


Q ss_pred             ---cCCCcceEEEecCCCC---cccc--cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEe------eee
Q 009796          339 ---DAPNLVSFDFEDNPIP---IVST--NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNY------KQV  404 (525)
Q Consensus       339 ---~~p~L~~l~~~g~~~~---~~~~--~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~------~~~  404 (525)
                         ++++|+.|.++++.+.   ..+.  .+++|+.|+++. +.+..     ++.-+.++++|+.|+|+.|.      ...
T Consensus       723 ~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~-N~L~~-----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~  796 (876)
T 4ecn_A          723 NYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY-NCFSS-----FPTQPLNSSQLKAFGIRHQRDAEGNRILR  796 (876)
T ss_dssp             CCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCS-SCCSS-----CCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred             cccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCC-CCCCc-----cchhhhcCCCCCEEECCCCCCcccccccc
Confidence               1127888888877653   3343  678888888874 22222     23335578888888887633      222


Q ss_pred             eeeeccccccCCCCCCCcccceEEEEEeee
Q 009796          405 LFNIDEFRSCHPSLPLQVESLSLFMESFSL  434 (525)
Q Consensus       405 ~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~  434 (525)
                      .  +|      ..+..+++|++|.|.+|.+
T Consensus       797 ~--ip------~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          797 Q--WP------TGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             C--CC------TTGGGCSSCCEEECCSSCC
T ss_pred             c--Ch------HHHhcCCCCCEEECCCCCC
Confidence            2  33      1455678888888887754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.60  E-value=4.2e-16  Score=168.10  Aligned_cols=280  Identities=10%  Similarity=0.055  Sum_probs=192.0

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCc-CCC---CCCCCCC------CcccEEEeceeeechHHHHH-
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCK-LEQ---PSHCANL------QSLKKLSLDEVYVNDQMVQS-  202 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~---~~~~~~l------~~L~~L~L~~~~~~~~~l~~-  202 (525)
                      .++++|++..   ......+|..+.++++|++|+|++|. +.+   |..++.+      ++|++|+|++|.++  .++. 
T Consensus       249 ~~L~~L~L~~---n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~  323 (636)
T 4eco_A          249 KDLTDVEVYN---CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVE  323 (636)
T ss_dssp             TTCCEEEEEC---CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCH
T ss_pred             CCCCEEEecC---CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCch
Confidence            5899999986   23356789999999999999999998 763   4444444      99999999999986  3555 


Q ss_pred             -HHhCCcCccEEEEeecCCCcee-ecccCCCccEEEEeeec-cccceEEEeCCC-ccEEEecccc-ccceeeccCCC--C
Q 009796          203 -LVRECRVLEDLSFFYCFGLKRL-RISEAHKLKSLILRFTY-QELESVEIAVPS-LQQLELSFSR-VPRLLDVAECP--H  275 (525)
Q Consensus       203 -ll~~c~~Le~L~L~~c~~l~~l-~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~-L~~L~l~~~~-~~~~~~~~~l~--~  275 (525)
                       .+.++++|++|++++|.....+ .+..+++|+.|++++|. ..++.....+++ |++|+++++. ...+..++.++  +
T Consensus       324 ~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~  403 (636)
T 4eco_A          324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV  403 (636)
T ss_dssp             HHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred             hhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence             7889999999999998754233 34467899999999886 222222235677 9999999988 54455555544  8


Q ss_pred             ccEEEeeCCCCChhhhhhhhc-------CCCCCcEEEecCccch--h-HhhhcCcccceEccccccchhhhccc------
Q 009796          276 LRKLVLFLPHFNDQEFHPLIS-------KFPLLEDLSIISLETL--E-RIMISSNRLMHLEVYNCSGLNRINVD------  339 (525)
Q Consensus       276 L~~L~L~~~~~~~~~~~~ll~-------~~~~Le~L~L~~c~~l--~-~~~~~~~~L~~L~l~~c~~L~~l~~~------  339 (525)
                      |+.|+++++.+++. .+..+.       .+++|+.|+++++..-  . .+...+++|+.|+++++. +..+...      
T Consensus       404 L~~L~Ls~N~l~~~-~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~  481 (636)
T 4eco_A          404 MSAIDFSYNEIGSV-DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDEN  481 (636)
T ss_dssp             EEEEECCSSCTTTT-TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETT
T ss_pred             cCEEECcCCcCCCc-chhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhcccc
Confidence            99999998888764 222233       5678889999886532  1 122235788888888753 2222211      


Q ss_pred             -----CCCcceEEEecCCCC---cccc--cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEe------ee
Q 009796          340 -----APNLVSFDFEDNPIP---IVST--NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNY------KQ  403 (525)
Q Consensus       340 -----~p~L~~l~~~g~~~~---~~~~--~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~------~~  403 (525)
                           +++|+.|.++++.+.   ..+.  .+++|+.++++. +.+..     ++..+.++++|+.|++++|.      ..
T Consensus       482 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~-----ip~~~~~l~~L~~L~Ls~N~~ls~N~l~  555 (636)
T 4eco_A          482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY-NSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTL  555 (636)
T ss_dssp             EECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCS-SCCSS-----CCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred             ccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCC-CCCCC-----cChhhhcCCCCCEEECCCCcccccCccc
Confidence                 127888888887653   3343  678888888874 33222     23345678888888886432      22


Q ss_pred             eeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796          404 VLFNIDEFRSCHPSLPLQVESLSLFMESFSL  434 (525)
Q Consensus       404 ~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~  434 (525)
                      ..  +|     . .+..+++|+.|+|..|.+
T Consensus       556 ~~--~p-----~-~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          556 RE--WP-----E-GITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CC--CC-----T-TGGGCSSCCEEECCSSCC
T ss_pred             cc--Ch-----H-HHhcCCCCCEEECCCCcC
Confidence            22  44     1 455678888888888744

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.60  E-value=4.7e-15  Score=157.24  Aligned_cols=307  Identities=13%  Similarity=0.070  Sum_probs=180.3

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le  211 (525)
                      ..+++|+++.  + ......|..+..+++|++|+|++|.+..  +..+.++++|++|+|++|.+... ....++++++|+
T Consensus        26 ~~L~~L~Ls~--n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~  101 (549)
T 2z81_A           26 AAMKSLDLSF--N-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLK  101 (549)
T ss_dssp             TTCCEEECCS--S-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCC
T ss_pred             CCccEEECcC--C-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCc
Confidence            4688888765  2 1222335567778889999999888877  45678888899999988887432 344577888999


Q ss_pred             EEEEeecCCCc-e--eecccCCCccEEEEeeeccccceEE----EeCCCccEEEecccc--ccceeeccCCCCccEEEee
Q 009796          212 DLSFFYCFGLK-R--LRISEAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLF  282 (525)
Q Consensus       212 ~L~L~~c~~l~-~--l~i~~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~  282 (525)
                      +|++++|.... .  -.+.++++|+.|++++|. .+..+.    ..+++|++|+++++.  ...+..++.+++|+.|+++
T Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE-TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH  180 (549)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             EEECCCCcccccchhhhhhccCCccEEECCCCc-cccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence            99998886432 1  234567888888888885 233321    247788888888887  3345567777788888887


Q ss_pred             CCCCChhhhhhhhcCCCCCcEEEecCccchhH------hhhcCcccceEcccccc-------chhhhc------------
Q 009796          283 LPHFNDQEFHPLISKFPLLEDLSIISLETLER------IMISSNRLMHLEVYNCS-------GLNRIN------------  337 (525)
Q Consensus       283 ~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~------~~~~~~~L~~L~l~~c~-------~L~~l~------------  337 (525)
                      .+.+... ...++..+++|+.|+++++.....      +...++.|+.|.+.++.       .+....            
T Consensus       181 ~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~  259 (549)
T 2z81_A          181 LSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD  259 (549)
T ss_dssp             CSBSTTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred             cCccccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence            7766542 233345677777777777542211      11113455555554421       001111            


Q ss_pred             ------------------ccCCCcceEEEecCCCCcc---------cccCCCCceEEEEeeecCChhccccHHHHHHhcc
Q 009796          338 ------------------VDAPNLVSFDFEDNPIPIV---------STNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFN  390 (525)
Q Consensus       338 ------------------~~~p~L~~l~~~g~~~~~~---------~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~  390 (525)
                                        ...++|+.+.+.+..++..         ....++|+.++++. +.+    ......+++.++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~-n~l----~~ip~~~~~~l~  334 (549)
T 2z81_A          260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN-SKV----FLVPCSFSQHLK  334 (549)
T ss_dssp             SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES-SCC----CCCCHHHHHHCT
T ss_pred             cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc-Ccc----ccCCHHHHhcCc
Confidence                              1234455555544443311         01134566666653 211    122334556788


Q ss_pred             ccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeec
Q 009796          391 QIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLS  462 (525)
Q Consensus       391 ~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~~l~~l~l~  462 (525)
                      +|+.|+++.|.....+  |+.  .. .+..+++|++|.|..|.+..      .......+-..+.+++|.+.
T Consensus       335 ~L~~L~Ls~N~l~~~~--~~~--~~-~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~~~l~~L~~L~Ls  395 (549)
T 2z81_A          335 SLEFLDLSENLMVEEY--LKN--SA-CKGAWPSLQTLVLSQNHLRS------MQKTGEILLTLKNLTSLDIS  395 (549)
T ss_dssp             TCCEEECCSSCCCHHH--HHH--HT-CTTSSTTCCEEECTTSCCCC------HHHHHHHGGGCTTCCEEECT
T ss_pred             cccEEEccCCcccccc--ccc--hh-hhhccccCcEEEccCCcccc------cccchhhhhcCCCCCEEECC
Confidence            8888888877765542  110  01 34567888888888773211      11111223344568888873

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.60  E-value=4.8e-16  Score=157.60  Aligned_cols=287  Identities=19%  Similarity=0.136  Sum_probs=185.5

Q ss_pred             cCCeEEEEEeecCCCCcccCCccc-cCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796          134 NGVKELDFEVITDKNSVNALPQTI-FSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L  210 (525)
                      .+++.+++..    .....+|..+ ..+++|++|+|++|.+..  +..+..+++|++|+|++|.++.. .+..+.++++|
T Consensus        45 ~~l~~l~l~~----~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L  119 (390)
T 3o6n_A           45 NNQKIVTFKN----STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLL  119 (390)
T ss_dssp             CCCSEEEEES----CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             CCceEEEecC----CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCC
Confidence            5788888765    2344566654 457889999999888776  44678888999999988887421 23446778889


Q ss_pred             cEEEEeecCCCceee---cccCCCccEEEEeeec-cccceE-EEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCC
Q 009796          211 EDLSFFYCFGLKRLR---ISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLP  284 (525)
Q Consensus       211 e~L~L~~c~~l~~l~---i~~l~~L~~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~  284 (525)
                      ++|++++|.. ..+.   +..+++|+.|++++|. ..+..- ...+++|++|+++++. ...  .++.+++|+.|+++++
T Consensus       120 ~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          120 TVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN  196 (390)
T ss_dssp             CEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSS
T ss_pred             CEEECCCCcc-CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccc
Confidence            9999988854 2333   3457888888888885 222111 1256888888888887 222  4677888888888888


Q ss_pred             CCChhhhhhhhcCCCCCcEEEecCccchhHhhhcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC----cccc
Q 009796          285 HFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP----IVST  358 (525)
Q Consensus       285 ~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~----~~~~  358 (525)
                      .++.      +...++|+.|+++++..-.......++|+.|+++++.  ....+ ...++|+.|.++++.+.    ..+.
T Consensus       197 ~l~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          197 LLST------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL-LNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             CCSE------EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGG-GGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             cccc------cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHH-cCCCCccEEECCCCcCCCcChhHcc
Confidence            7765      2345678888888765322112224678888887753  22222 45678888888887653    3445


Q ss_pred             cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCC
Q 009796          359 NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDV  438 (525)
Q Consensus       359 ~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  438 (525)
                      .+++|+.++++. +.+..     +......+++|++|+++.|....   +|+      .+..+++|++|.|.+|....- 
T Consensus       270 ~l~~L~~L~L~~-n~l~~-----~~~~~~~l~~L~~L~L~~n~l~~---~~~------~~~~l~~L~~L~L~~N~i~~~-  333 (390)
T 3o6n_A          270 KMQRLERLYISN-NRLVA-----LNLYGQPIPTLKVLDLSHNHLLH---VER------NQPQFDRLENLYLDHNSIVTL-  333 (390)
T ss_dssp             TCSSCCEEECCS-SCCCE-----EECSSSCCTTCCEEECCSSCCCC---CGG------GHHHHTTCSEEECCSSCCCCC-
T ss_pred             ccccCCEEECCC-CcCcc-----cCcccCCCCCCCEEECCCCccee---cCc------cccccCcCCEEECCCCcccee-
Confidence            678888888874 22222     11122567888888888776542   331      344567888888887733211 


Q ss_pred             CchhHHHHHHhHhhhccccceee
Q 009796          439 VPSEYEILLDDLFWIFYPKNLCL  461 (525)
Q Consensus       439 ~~~~~~~~~~~Ll~~~~l~~l~l  461 (525)
                                .+-..+.++++.+
T Consensus       334 ----------~~~~~~~L~~L~l  346 (390)
T 3o6n_A          334 ----------KLSTHHTLKNLTL  346 (390)
T ss_dssp             ----------CCCTTCCCSEEEC
T ss_pred             ----------CchhhccCCEEEc
Confidence                      1223346777777

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.60  E-value=6.1e-16  Score=159.94  Aligned_cols=270  Identities=15%  Similarity=0.097  Sum_probs=145.3

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .++++|+++.  +.  ...+|  +..+++|++|++++|.+...+ ++++++|++|++++|.++.  ++  ++.+++|++|
T Consensus        64 ~~L~~L~Ls~--n~--l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L  132 (457)
T 3bz5_A           64 TGLTKLICTS--NN--ITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYL  132 (457)
T ss_dssp             TTCSEEECCS--SC--CSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEE
T ss_pred             CCCCEEEccC--Cc--CCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEE
Confidence            4677777665  21  12233  556677777777777776632 5667777777777776643  11  5667777777


Q ss_pred             EEeecCCCceeecccCCCccEEEEeeeccccceEEE-eCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhh
Q 009796          214 SFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEI-AVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF  291 (525)
Q Consensus       214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~  291 (525)
                      ++++|.. ..+.+..+++|+.|++++|. .+..+.+ .+++|++|+++++. ...+  ++.+++|+.|+++++.+++.  
T Consensus       133 ~l~~N~l-~~l~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~--  206 (457)
T 3bz5_A          133 NCARNTL-TEIDVSHNTQLTELDCHLNK-KITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL--  206 (457)
T ss_dssp             ECTTSCC-SCCCCTTCTTCCEEECTTCS-CCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC--
T ss_pred             ECCCCcc-ceeccccCCcCCEEECCCCC-cccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee--
Confidence            7776643 33455566777777777664 2222222 45667777776666 2222  56666666666666666552  


Q ss_pred             hhhhcCCCCCcEEEecCccchhHhh-hcCcccceEccccc----------cchhhhcccCCCcceEEEecCCCC--cccc
Q 009796          292 HPLISKFPLLEDLSIISLETLERIM-ISSNRLMHLEVYNC----------SGLNRINVDAPNLVSFDFEDNPIP--IVST  358 (525)
Q Consensus       292 ~~ll~~~~~Le~L~L~~c~~l~~~~-~~~~~L~~L~l~~c----------~~L~~l~~~~p~L~~l~~~g~~~~--~~~~  358 (525)
                        -+..+++|+.|+++++.. +.+. ..+++|+.|+++++          ++++.+....++|+.++++++...  +...
T Consensus       207 --~l~~l~~L~~L~Ls~N~l-~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~  283 (457)
T 3bz5_A          207 --DLNQNIQLTFLDCSSNKL-TEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAE  283 (457)
T ss_dssp             --CCTTCTTCSEEECCSSCC-SCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred             --ccccCCCCCEEECcCCcc-cccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccccc
Confidence              145566666666666532 1111 12345555555542          223333333344444444444321  2233


Q ss_pred             cCCCCceEEEEeeecCChhcc--ccHHH-HHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796          359 NAPCPLNVLFSNFGDIDTHWY--LNLME-FIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL  434 (525)
Q Consensus       359 ~~~~L~~l~l~~~~~~~~~~~--~~l~~-~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~  434 (525)
                      .+++|+.++++..........  ..+.. -+..+++|+.|.++.|.....           .+..+++|+.|++..|.+
T Consensus       284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-----------~l~~l~~L~~L~l~~N~l  351 (457)
T 3bz5_A          284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-----------DVSHNTKLKSLSCVNAHI  351 (457)
T ss_dssp             TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-----------CCTTCTTCSEEECCSSCC
T ss_pred             ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-----------ccccCCcCcEEECCCCCC
Confidence            456677777653111100000  00000 034556777777776654431           245567778888777643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.60  E-value=1.8e-15  Score=168.54  Aligned_cols=135  Identities=17%  Similarity=0.106  Sum_probs=62.5

Q ss_pred             CccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHH-HHHhCCcCccEEEEeecCCCce---eecc
Q 009796          154 PQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQ-SLVRECRVLEDLSFFYCFGLKR---LRIS  227 (525)
Q Consensus       154 p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~-~ll~~c~~Le~L~L~~c~~l~~---l~i~  227 (525)
                      |..+.++++|++|+|++|.+..  +..+.++++|++|+|++|.+.+..+. ..+.++++|++|+|++|.....   -.+.
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~  145 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG  145 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred             HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence            3344455555555555555544  44455555555555555554321111 1244555555555555543221   1133


Q ss_pred             cCCCccEEEEeeec-cccceEEE-eC--CCccEEEecccc--ccceeeccCCCC------ccEEEeeCCCCCh
Q 009796          228 EAHKLKSLILRFTY-QELESVEI-AV--PSLQQLELSFSR--VPRLLDVAECPH------LRKLVLFLPHFND  288 (525)
Q Consensus       228 ~l~~L~~L~l~~c~-~~l~~~~~-~~--~~L~~L~l~~~~--~~~~~~~~~l~~------L~~L~L~~~~~~~  288 (525)
                      ++++|+.|++++|. .....-.+ .+  ++|+.|+++++.  ...+..++.+++      |+.|+++++.+++
T Consensus       146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  218 (844)
T 3j0a_A          146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV  218 (844)
T ss_dssp             TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred             hCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence            45555555555553 11100000 11  455555555555  222333344443      6666666665443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.59  E-value=4.3e-16  Score=153.02  Aligned_cols=241  Identities=15%  Similarity=0.024  Sum_probs=127.6

Q ss_pred             cCCeEEEEEeecCCCC-cccCCccccCCCCccEEEecC-CcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcC
Q 009796          134 NGVKELDFEVITDKNS-VNALPQTIFSAKLLTSLKLFG-CKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV  209 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~-~~~lp~~l~~~~~L~~L~L~~-~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~  209 (525)
                      .+|++|++..  .... ...+|..+..+++|++|+|++ +.+.+  |..+.++++|++|+|++|.++. .++..+..+++
T Consensus        50 ~~l~~L~L~~--~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSG--LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEEC--CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTT
T ss_pred             ceEEEEECCC--CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCC
Confidence            3567777665  1111 115677777777788888874 66554  5566777777777777777632 13334566777


Q ss_pred             ccEEEEeecCCCcee--ecccCCCccEEEEeeec-c-ccceEEEeCC-CccEEEecccc--ccceeeccCCCCccEEEee
Q 009796          210 LEDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-Q-ELESVEIAVP-SLQQLELSFSR--VPRLLDVAECPHLRKLVLF  282 (525)
Q Consensus       210 Le~L~L~~c~~l~~l--~i~~l~~L~~L~l~~c~-~-~l~~~~~~~~-~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~  282 (525)
                      |++|++++|.....+  .+..+++|+.|++++|. . .+......++ +|++|+++++.  ...+..++.++ |+.|+++
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            777777776432221  23345566666666553 0 1111111222 45555555544  22333344443 5555555


Q ss_pred             CCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCCcccccCCC
Q 009796          283 LPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPC  362 (525)
Q Consensus       283 ~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~  362 (525)
                      ++.+++. ....+.++++|+.|+++++....                                       .+..+..+++
T Consensus       206 ~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~---------------------------------------~~~~~~~l~~  245 (313)
T 1ogq_A          206 RNMLEGD-ASVLFGSDKNTQKIHLAKNSLAF---------------------------------------DLGKVGLSKN  245 (313)
T ss_dssp             SSEEEEC-CGGGCCTTSCCSEEECCSSEECC---------------------------------------BGGGCCCCTT
T ss_pred             CCcccCc-CCHHHhcCCCCCEEECCCCceee---------------------------------------ecCcccccCC
Confidence            5444432 23334444444444444422100                                       0011223455


Q ss_pred             CceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796          363 PLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (525)
Q Consensus       363 L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~  432 (525)
                      |++++++. +.+.    +..+..+..+++|+.|+++.|...+.  +|       ....+++|+.|.+.+|
T Consensus       246 L~~L~Ls~-N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~--ip-------~~~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          246 LNGLDLRN-NRIY----GTLPQGLTQLKFLHSLNVSFNNLCGE--IP-------QGGNLQRFDVSAYANN  301 (313)
T ss_dssp             CCEEECCS-SCCE----ECCCGGGGGCTTCCEEECCSSEEEEE--CC-------CSTTGGGSCGGGTCSS
T ss_pred             CCEEECcC-Cccc----CcCChHHhcCcCCCEEECcCCccccc--CC-------CCccccccChHHhcCC
Confidence            66666653 2111    12334456788888888888777765  33       3456778888877766

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.59  E-value=1.9e-15  Score=156.22  Aligned_cols=295  Identities=17%  Similarity=0.136  Sum_probs=206.6

Q ss_pred             HcCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796          133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (525)
Q Consensus       133 ~~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~  212 (525)
                      ..++++|+++.  +.  ...+| .+..+++|++|+|++|.+...+ ++.+++|++|++++|.++.-  +  ++++++|++
T Consensus        41 l~~L~~L~Ls~--n~--l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~  110 (457)
T 3bz5_A           41 LATLTSLDCHN--SS--ITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL--D--VTPLTKLTY  110 (457)
T ss_dssp             HTTCCEEECCS--SC--CCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC--C--CTTCTTCCE
T ss_pred             cCCCCEEEccC--CC--cccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee--e--cCCCCcCCE
Confidence            36899999876  22  22345 6788999999999999988732 78899999999999998542  2  788999999


Q ss_pred             EEEeecCCCceeecccCCCccEEEEeeeccccceEEE-eCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhh
Q 009796          213 LSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEI-AVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEF  291 (525)
Q Consensus       213 L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~  291 (525)
                      |++++|.. ..+.+..+++|+.|++++|.  +..+.+ .+++|++|+++++.......++.+++|+.|+++++.+++-  
T Consensus       111 L~L~~N~l-~~l~~~~l~~L~~L~l~~N~--l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l--  185 (457)
T 3bz5_A          111 LNCDTNKL-TKLDVSQNPLLTYLNCARNT--LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--  185 (457)
T ss_dssp             EECCSSCC-SCCCCTTCTTCCEEECTTSC--CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC--
T ss_pred             EECCCCcC-CeecCCCCCcCCEEECCCCc--cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee--
Confidence            99999853 44667888999999999996  333334 6899999999999622223688999999999999999883  


Q ss_pred             hhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhc-ccCCCcceEEEecCCCC-cccccCCCCceEEEE
Q 009796          292 HPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRIN-VDAPNLVSFDFEDNPIP-IVSTNAPCPLNVLFS  369 (525)
Q Consensus       292 ~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~-~~~p~L~~l~~~g~~~~-~~~~~~~~L~~l~l~  369 (525)
                      +  +..+++|+.|+++++..-..-...+++|+.|+++++. +..+. ...++|+.|.++++.+. .....+++|+.+++.
T Consensus       186 ~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~  262 (457)
T 3bz5_A          186 D--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI  262 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred             c--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEecc
Confidence            3  6789999999999875322112235789999998853 32222 35689999999988764 334456667666553


Q ss_pred             eeecCCh------hccccHHHHHHhccccceEEEEEEeeeeeeeeccc---cccCCCCCCCcccceEEEEEeeeccCCCc
Q 009796          370 NFGDIDT------HWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEF---RSCHPSLPLQVESLSLFMESFSLYMDVVP  440 (525)
Q Consensus       370 ~~~~~~~------~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  440 (525)
                      . .....      ...+.++  ...+++|+.|+++.|.....  +|..   +... .+...++|++|.+..|.+.+    
T Consensus       263 ~-n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~--l~~~~~~L~~L-~l~~~~~L~~L~L~~N~l~~----  332 (457)
T 3bz5_A          263 Q-TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL--LDCQAAGITEL-DLSQNPKLVYLYLNNTELTE----  332 (457)
T ss_dssp             T-CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE--EECTTCCCSCC-CCTTCTTCCEEECTTCCCSC----
T ss_pred             C-CCCCEEECCCCccCCccc--ccccccCCEEECCCCcccce--eccCCCcceEe-chhhcccCCEEECCCCcccc----
Confidence            2 11110      0111111  35679999999998765554  3321   1112 35567889999998884322    


Q ss_pred             hhHHHHHHhHhhhccccceeec
Q 009796          441 SEYEILLDDLFWIFYPKNLCLS  462 (525)
Q Consensus       441 ~~~~~~~~~Ll~~~~l~~l~l~  462 (525)
                           +  .+-.++.++++.+.
T Consensus       333 -----l--~l~~l~~L~~L~l~  347 (457)
T 3bz5_A          333 -----L--DVSHNTKLKSLSCV  347 (457)
T ss_dssp             -----C--CCTTCTTCSEEECC
T ss_pred             -----c--ccccCCcCcEEECC
Confidence                 1  13345578888873

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.59  E-value=2e-15  Score=164.34  Aligned_cols=286  Identities=15%  Similarity=0.059  Sum_probs=143.5

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCC--CccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcC
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAK--LLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV  209 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~--~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~  209 (525)
                      ..+++|++..  + ......|..+..++  +|++|+|++|.+..  +..+..+++|++|+|++|.+... ....+.++++
T Consensus       222 ~~L~~L~L~~--n-~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~  297 (680)
T 1ziw_A          222 TSIRNLSLSN--S-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFN  297 (680)
T ss_dssp             SCCCEEECTT--S-CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTCTT
T ss_pred             ccccEEEccC--C-cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc-ChhhhcCCCC
Confidence            4677777654  1 11222233444443  37777777766655  34456667777777766655221 1223444555


Q ss_pred             ccEEEEee---------------------------------cCCCc--eeecccCCCccEEEEeeeccccceEE------
Q 009796          210 LEDLSFFY---------------------------------CFGLK--RLRISEAHKLKSLILRFTYQELESVE------  248 (525)
Q Consensus       210 Le~L~L~~---------------------------------c~~l~--~l~i~~l~~L~~L~l~~c~~~l~~~~------  248 (525)
                      |++|++.+                                 |....  ...+.++++|+.|++++|......+.      
T Consensus       298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~  377 (680)
T 1ziw_A          298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS  377 (680)
T ss_dssp             CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG
T ss_pred             ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcc
Confidence            55555544                                 32111  01122344555555544421111111      


Q ss_pred             EeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchh---HhhhcCcccc
Q 009796          249 IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLE---RIMISSNRLM  323 (525)
Q Consensus       249 ~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~---~~~~~~~~L~  323 (525)
                      ...++|+.|+++++.  ...+..+..+++|+.|+++++.+++......+.++++|+.|+++++....   .....+++|+
T Consensus       378 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~  457 (680)
T 1ziw_A          378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ  457 (680)
T ss_dssp             GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC
T ss_pred             cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccc
Confidence            012456666666665  22234566777888888887777654333556677788888887765311   1112246677


Q ss_pred             eEcccccc--chh---hhcccCCCcceEEEecCCCC----cccccCCCCceEEEEeeecCChhcccc----HHHHHHhcc
Q 009796          324 HLEVYNCS--GLN---RINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHWYLN----LMEFIGAFN  390 (525)
Q Consensus       324 ~L~l~~c~--~L~---~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~----l~~~l~~l~  390 (525)
                      .|.+.++.  .+.   .....+++|+.|.++++.+.    ..+..+++|+.++++. +.+.......    ....+..++
T Consensus       458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~  536 (680)
T 1ziw_A          458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLS  536 (680)
T ss_dssp             EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTTTCT
T ss_pred             cchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCC-CCccccchhhccCCcchhhcCCC
Confidence            77666542  111   11124566777777666543    2234566777777764 2222211100    001245566


Q ss_pred             ccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796          391 QIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (525)
Q Consensus       391 ~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~  432 (525)
                      +|+.|+++.|....   +|..     .+..+++|+.|+|..|
T Consensus       537 ~L~~L~L~~N~l~~---i~~~-----~~~~l~~L~~L~Ls~N  570 (680)
T 1ziw_A          537 HLHILNLESNGFDE---IPVE-----VFKDLFELKIIDLGLN  570 (680)
T ss_dssp             TCCEEECCSSCCCC---CCTT-----TTTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCCCCC---CCHH-----HcccccCcceeECCCC
Confidence            66666666555441   3311     2344566666666555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.58  E-value=8.8e-15  Score=163.05  Aligned_cols=264  Identities=16%  Similarity=0.128  Sum_probs=161.0

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCC--CCCCCcccEEEeceeeechHHHHHHHhCCcC
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSH--CANLQSLKKLSLDEVYVNDQMVQSLVRECRV  209 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~  209 (525)
                      .+++.|+++.   .......|..+.++++|++|+|++|.+..  +..  +.++++|++|+|++|.+........++++++
T Consensus        73 ~~L~~L~Ls~---N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~  149 (844)
T 3j0a_A           73 PNLRILDLGS---SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS  149 (844)
T ss_dssp             TTCCEEECTT---CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred             CCCCEEECCC---CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence            3678877754   12223346677788888888888887765  332  6788888888888887743333345678888


Q ss_pred             ccEEEEeecCCCc---------------eee-------------cccCCC------ccEEEEeeec--c-----------
Q 009796          210 LEDLSFFYCFGLK---------------RLR-------------ISEAHK------LKSLILRFTY--Q-----------  242 (525)
Q Consensus       210 Le~L~L~~c~~l~---------------~l~-------------i~~l~~------L~~L~l~~c~--~-----------  242 (525)
                      |++|++++|....               .+.             +..+++      |+.|++++|.  .           
T Consensus       150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~  229 (844)
T 3j0a_A          150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS  229 (844)
T ss_dssp             CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred             CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence            8888888774311               010             111222      6777777663  0           


Q ss_pred             --ccceEEE-------------------------eCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhh
Q 009796          243 --ELESVEI-------------------------AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHP  293 (525)
Q Consensus       243 --~l~~~~~-------------------------~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~  293 (525)
                        .+..+.+                         ..++|+.|+++++.  ...+..++.+++|+.|+|+++.+++. ...
T Consensus       230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~  308 (844)
T 3j0a_A          230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-ADE  308 (844)
T ss_dssp             SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE-CTT
T ss_pred             cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC-ChH
Confidence              0001110                         12678888888887  33345678899999999999988764 345


Q ss_pred             hhcCCCCCcEEEecCccchh---HhhhcCcccceEccccccchhhh----cccCCCcceEEEecCCCCcccccCCCCceE
Q 009796          294 LISKFPLLEDLSIISLETLE---RIMISSNRLMHLEVYNCSGLNRI----NVDAPNLVSFDFEDNPIPIVSTNAPCPLNV  366 (525)
Q Consensus       294 ll~~~~~Le~L~L~~c~~l~---~~~~~~~~L~~L~l~~c~~L~~l----~~~~p~L~~l~~~g~~~~~~~~~~~~L~~l  366 (525)
                      .+.++++|++|+|+++....   ......++|+.|+++++. +..+    ....++|+.|.++++.+. .+..+++|+.+
T Consensus       309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~L~~L  386 (844)
T 3j0a_A          309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDI  386 (844)
T ss_dssp             TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSC-CCSSCCSCSEE
T ss_pred             HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCCCC-cccCCCCcchh
Confidence            57788999999998875311   112235678888888752 3222    134577888888777543 11225566666


Q ss_pred             EEEeeecCCh-----------------hccccHHHHHHhccccceEEEEEEeeee
Q 009796          367 LFSNFGDIDT-----------------HWYLNLMEFIGAFNQIGELHLSLNYKQV  404 (525)
Q Consensus       367 ~l~~~~~~~~-----------------~~~~~l~~~l~~l~~L~~L~L~~~~~~~  404 (525)
                      +++. +.+..                 ........++.++++|+.|+++.|....
T Consensus       387 ~l~~-N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~  440 (844)
T 3j0a_A          387 FLSG-NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS  440 (844)
T ss_dssp             EEES-CCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred             ccCC-CCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccc
Confidence            6553 11110                 0000123445678888888888776653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.58  E-value=1.6e-14  Score=152.04  Aligned_cols=123  Identities=15%  Similarity=0.093  Sum_probs=66.6

Q ss_pred             cCCCCCcEEEecCccchhHh---hhcCcccceEcccccc--chhh---hcccCCCcceEEEecCCCCc-----ccccCCC
Q 009796          296 SKFPLLEDLSIISLETLERI---MISSNRLMHLEVYNCS--GLNR---INVDAPNLVSFDFEDNPIPI-----VSTNAPC  362 (525)
Q Consensus       296 ~~~~~Le~L~L~~c~~l~~~---~~~~~~L~~L~l~~c~--~L~~---l~~~~p~L~~l~~~g~~~~~-----~~~~~~~  362 (525)
                      ..+++|++|+++++.....+   ...+++|+.|+++++.  .+..   .....++|+.|+++++.+..     .+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            46677777777776432211   1234667777777643  1111   12356777777777765431     1334667


Q ss_pred             CceEEEEeeecCChhccccHHHHHHhc-cccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeec
Q 009796          363 PLNVLFSNFGDIDTHWYLNLMEFIGAF-NQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLY  435 (525)
Q Consensus       363 L~~l~l~~~~~~~~~~~~~l~~~l~~l-~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~  435 (525)
                      |+.++++. +.+...       .+..+ ++|+.|+++.|...  . +|+.      +..+++|++|.|.+|.+.
T Consensus       401 L~~L~Ls~-N~l~~~-------~~~~l~~~L~~L~Ls~N~l~--~-ip~~------~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          401 LLSLNMSS-NILTDT-------IFRCLPPRIKVLDLHSNKIK--S-IPKQ------VVKLEALQELNVASNQLK  457 (520)
T ss_dssp             CCEEECCS-SCCCGG-------GGGSCCTTCCEEECCSSCCC--C-CCGG------GGGCTTCCEEECCSSCCC
T ss_pred             CCEEECcC-CCCCcc-------hhhhhcccCCEEECCCCccc--c-cchh------hhcCCCCCEEECCCCcCC
Confidence            77777764 222211       11222 57777777766554  2 4422      334677777777766443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.57  E-value=4.6e-15  Score=158.97  Aligned_cols=271  Identities=14%  Similarity=0.083  Sum_probs=176.1

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le  211 (525)
                      .+++.|++..  + ......|..+..+++|++|+|++|.+..  +..++++++|++|+|++|.++. ....++.++++|+
T Consensus        75 ~~L~~L~L~~--n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~  150 (597)
T 3oja_B           75 RQVELLNLND--L-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLT  150 (597)
T ss_dssp             CCCSEEECTT--S-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             CCCcEEECCC--C-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCC
Confidence            5788888764  1 1122233466778889999999888877  4456788899999998888742 1223457788899


Q ss_pred             EEEEeecCCCcee--ecccCCCccEEEEeeeccccceEEE-eCCCccEEEeccccccceeeccCCCCccEEEeeCCCCCh
Q 009796          212 DLSFFYCFGLKRL--RISEAHKLKSLILRFTYQELESVEI-AVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFND  288 (525)
Q Consensus       212 ~L~L~~c~~l~~l--~i~~l~~L~~L~l~~c~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~  288 (525)
                      +|+|++|......  .+.++++|+.|++++|.  +..+.. .+++|+.|+++++..   ..+...++|+.|+++++.++.
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~l~~L~~L~l~~n~l---~~l~~~~~L~~L~ls~n~l~~  225 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLL---STLAIPIAVEELDASHNSINV  225 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSBCCGGGCTTCSEEECCSSCC---SEEECCTTCSEEECCSSCCCE
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCCcChhhhhhhhhhhcccCcc---ccccCCchhheeeccCCcccc
Confidence            9999888543222  24567888888888885  333322 467888888877751   123445677777777777665


Q ss_pred             hhhhhhhcCCCCCcEEEecCccchhH-hhhcCcccceEccccccc--h-hhhcccCCCcceEEEecCCCC---cccccCC
Q 009796          289 QEFHPLISKFPLLEDLSIISLETLER-IMISSNRLMHLEVYNCSG--L-NRINVDAPNLVSFDFEDNPIP---IVSTNAP  361 (525)
Q Consensus       289 ~~~~~ll~~~~~Le~L~L~~c~~l~~-~~~~~~~L~~L~l~~c~~--L-~~l~~~~p~L~~l~~~g~~~~---~~~~~~~  361 (525)
                      .  ..  ...++|+.|+|+++..... ....+++|+.|+++++.-  + .......++|+.|.++++.+.   .....++
T Consensus       226 ~--~~--~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  301 (597)
T 3oja_B          226 V--RG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP  301 (597)
T ss_dssp             E--EC--SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCT
T ss_pred             c--cc--ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCC
Confidence            2  11  1235778888877643211 122356778888777531  1 112235678888888887664   2334588


Q ss_pred             CCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796          362 CPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL  434 (525)
Q Consensus       362 ~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~  434 (525)
                      +|+.|+++. +.+.     .++..+..+++|+.|+|+.|.+...           .+..+++|++|.|.+|.+
T Consensus       302 ~L~~L~Ls~-N~l~-----~i~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          302 TLKVLDLSH-NHLL-----HVERNQPQFDRLENLYLDHNSIVTL-----------KLSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             TCCEEECCS-SCCC-----CCGGGHHHHTTCSEEECCSSCCCCC-----------CCCTTCCCSEEECCSSCE
T ss_pred             CCcEEECCC-CCCC-----ccCcccccCCCCCEEECCCCCCCCc-----------ChhhcCCCCEEEeeCCCC
Confidence            999999985 3222     1333457889999999998775432           255678999999998843

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.57  E-value=2e-16  Score=164.00  Aligned_cols=316  Identities=16%  Similarity=0.089  Sum_probs=207.6

Q ss_pred             CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC------CCCCCCCCcccEEEeceeeechHHHHHHHhCCc
Q 009796          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECR  208 (525)
Q Consensus       135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~  208 (525)
                      .+++|+++.  .......+...+..+++|++|+|++|.+..      +..+..+++|++|+|++|.+++..+..+...++
T Consensus         4 ~l~~L~Ls~--~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            4 DIQSLDIQC--EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEES--CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             cceehhhhh--cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            567788865  222222333335578999999999999874      344567899999999999997777777777777


Q ss_pred             ----CccEEEEeecCCCc------eeecccCCCccEEEEeeec---cccceEEE----eCCCccEEEecccc-cc-----
Q 009796          209 ----VLEDLSFFYCFGLK------RLRISEAHKLKSLILRFTY---QELESVEI----AVPSLQQLELSFSR-VP-----  265 (525)
Q Consensus       209 ----~Le~L~L~~c~~l~------~l~i~~l~~L~~L~l~~c~---~~l~~~~~----~~~~L~~L~l~~~~-~~-----  265 (525)
                          +|++|++++|....      .-.+..+++|++|++++|.   .....+..    ..++|++|++++|. ..     
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                79999999996432      1224568999999999986   11111111    24579999999997 21     


Q ss_pred             ceeeccCCCCccEEEeeCCCCChhhhhhhhc----CCCCCcEEEecCccch-------hHhhhcCcccceEccccccchh
Q 009796          266 RLLDVAECPHLRKLVLFLPHFNDQEFHPLIS----KFPLLEDLSIISLETL-------ERIMISSNRLMHLEVYNCSGLN  334 (525)
Q Consensus       266 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~----~~~~Le~L~L~~c~~l-------~~~~~~~~~L~~L~l~~c~~L~  334 (525)
                      ....+..+++|+.|+++++.+++.....+..    ..++|++|++++|..-       ......+++|++|+++++. +.
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~  240 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LG  240 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CC
Confidence            2345677899999999999988754444332    4679999999998532       1222246899999999874 21


Q ss_pred             ---------hhcccCCCcceEEEecCCCCc--------ccccCCCCceEEEEeeecCChhccccHHHHHH-hccccceEE
Q 009796          335 ---------RINVDAPNLVSFDFEDNPIPI--------VSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIG-AFNQIGELH  396 (525)
Q Consensus       335 ---------~l~~~~p~L~~l~~~g~~~~~--------~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~-~l~~L~~L~  396 (525)
                               .+....++|+.|.++++.+..        .+..+++|+.++++. +.+.......+...+. ..++|++|+
T Consensus       241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~  319 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEPGCQLESLW  319 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC-CCCchHHHHHHHHHhccCCccceeeE
Confidence                     122247899999999987642        122478999999975 3333222222222222 336999999


Q ss_pred             EEEEeeeeee--eeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhh-hccccceeecCC
Q 009796          397 LSLNYKQVLF--NIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFW-IFYPKNLCLSPE  464 (525)
Q Consensus       397 L~~~~~~~~~--~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~-~~~l~~l~l~~~  464 (525)
                      ++.|......  .++     . .+..+++|++|+|..|..    .......+...+-. .+.+++|.+...
T Consensus       320 L~~n~l~~~~~~~l~-----~-~l~~~~~L~~L~Ls~n~i----~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          320 VKSCSFTAACCSHFS-----S-VLAQNRFLLELQISNNRL----EDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             CTTSCCBGGGHHHHH-----H-HHHHCSSCCEEECCSSBC----HHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cCCCCCchHHHHHHH-----H-HHhhCCCccEEEccCCcc----ccccHHHHHHHHcCCCCceEEEECCCC
Confidence            9987755431  011     1 234568999999998832    11122333333332 457899998443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.57  E-value=8.1e-15  Score=146.45  Aligned_cols=257  Identities=15%  Similarity=0.122  Sum_probs=140.7

Q ss_pred             ccCCccccCCCCccEEEecCCcCCC-C-CCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce--eec
Q 009796          151 NALPQTIFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR--LRI  226 (525)
Q Consensus       151 ~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~--l~i  226 (525)
                      ..+|..+.  ++|++|++++|.+.. + ..+.++++|++|+|++|.++.- ....+.++++|++|++++|....-  -.+
T Consensus        44 ~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  120 (353)
T 2z80_A           44 NSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWF  120 (353)
T ss_dssp             SSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHH
T ss_pred             cccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhHh
Confidence            34554443  366777777766665 2 3456677777777776665321 122345666777777766643211  113


Q ss_pred             ccCCCccEEEEeeec-cccce--EEEeCCCccEEEecccc---ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCC
Q 009796          227 SEAHKLKSLILRFTY-QELES--VEIAVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPL  300 (525)
Q Consensus       227 ~~l~~L~~L~l~~c~-~~l~~--~~~~~~~L~~L~l~~~~---~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~  300 (525)
                      .++++|+.|++++|. ..+..  ....+++|++|+++++.   ...+..++.+++|+.|+++++.+++. ....+.++++
T Consensus       121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~  199 (353)
T 2z80_A          121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLKSIQN  199 (353)
T ss_dssp             TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSE
T ss_pred             CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-CHHHHhcccc
Confidence            445666666666664 22222  11245667777776663   11223566677777777777766653 2344566677


Q ss_pred             CcEEEecCccchhHhh----hcCcccceEccccccchhhhcccCCCcceEEEecCCCCcccccCCCCceEEEEeeecCCh
Q 009796          301 LEDLSIISLETLERIM----ISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDT  376 (525)
Q Consensus       301 Le~L~L~~c~~l~~~~----~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~  376 (525)
                      |++|+++++.. +.+.    ..+++|+.|+++++. +..+..  ..+           ......+.++.+++.. ..+.+
T Consensus       200 L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~--~~l-----------~~~~~~~~l~~l~L~~-~~l~~  263 (353)
T 2z80_A          200 VSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTD-LDTFHF--SEL-----------STGETNSLIKKFTFRN-VKITD  263 (353)
T ss_dssp             EEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCB-CTTCCC--C-----------------CCCCCCEEEEES-CBCCH
T ss_pred             CCeecCCCCcc-ccchhhhhhhcccccEEECCCCc-cccccc--ccc-----------ccccccchhhcccccc-ccccC
Confidence            77777766542 1111    112344444444321 111000  000           0011245677777775 34444


Q ss_pred             hccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeec
Q 009796          377 HWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLY  435 (525)
Q Consensus       377 ~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~  435 (525)
                      .....++..+..+++|++|+++.|....   +|+.     .+..+++|++|+|.+|...
T Consensus       264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~---i~~~-----~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          264 ESLFQVMKLLNQISGLLELEFSRNQLKS---VPDG-----IFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             HHHHHHHHHHHTCTTCCEEECCSSCCCC---CCTT-----TTTTCTTCCEEECCSSCBC
T ss_pred             cchhhhHHHHhcccCCCEEECCCCCCCc---cCHH-----HHhcCCCCCEEEeeCCCcc
Confidence            3333456678899999999999887662   5522     1356899999999998443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.57  E-value=7.6e-16  Score=165.00  Aligned_cols=287  Identities=19%  Similarity=0.138  Sum_probs=202.6

Q ss_pred             cCCeEEEEEeecCCCCcccCCccc-cCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796          134 NGVKELDFEVITDKNSVNALPQTI-FSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L  210 (525)
                      .+++.+++..    .....+|..+ ..+++|++|+|++|.+..  +..+..+++|++|+|++|.++. ..+..++++++|
T Consensus        51 ~~l~~l~l~~----~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L  125 (597)
T 3oja_B           51 NNQKIVTFKN----STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLL  125 (597)
T ss_dssp             CCCSEEEESS----CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCceEEEeeC----CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCC
Confidence            5788888754    2345566654 458999999999999887  4578899999999999998843 223456889999


Q ss_pred             cEEEEeecCCCceee---cccCCCccEEEEeeec-cccce-EEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCC
Q 009796          211 EDLSFFYCFGLKRLR---ISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLP  284 (525)
Q Consensus       211 e~L~L~~c~~l~~l~---i~~l~~L~~L~l~~c~-~~l~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~  284 (525)
                      ++|+|++|.. ..++   +.++++|+.|++++|. ..+.. ....+++|++|+++++. ...  .++.+++|+.|+++++
T Consensus       126 ~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          126 TVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN  202 (597)
T ss_dssp             CEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSS
T ss_pred             CEEEeeCCCC-CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccC
Confidence            9999999864 3333   3568999999999986 22221 12257899999999987 222  4678899999999998


Q ss_pred             CCChhhhhhhhcCCCCCcEEEecCccchhHhhhcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC----cccc
Q 009796          285 HFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP----IVST  358 (525)
Q Consensus       285 ~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~----~~~~  358 (525)
                      .+++      +...++|+.|+++++..-.......++|+.|+++++.  .... ....++|+.|.++++.+.    ..+.
T Consensus       203 ~l~~------l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          203 LLST------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             CCSE------EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             cccc------ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChh-hccCCCCCEEECCCCccCCCCHHHhc
Confidence            8776      3456789999999875322222234689999998853  2222 246789999999998764    4556


Q ss_pred             cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCC
Q 009796          359 NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDV  438 (525)
Q Consensus       359 ~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  438 (525)
                      .+++|+.|+++. +.+..     +......+++|+.|+|+.|....   +|+      .+..+++|++|.|.+|.+..- 
T Consensus       276 ~l~~L~~L~Ls~-N~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~---i~~------~~~~l~~L~~L~L~~N~l~~~-  339 (597)
T 3oja_B          276 KMQRLERLYISN-NRLVA-----LNLYGQPIPTLKVLDLSHNHLLH---VER------NQPQFDRLENLYLDHNSIVTL-  339 (597)
T ss_dssp             TCSSCCEEECTT-SCCCE-----EECSSSCCTTCCEEECCSSCCCC---CGG------GHHHHTTCSEEECCSSCCCCC-
T ss_pred             CccCCCEEECCC-CCCCC-----CCcccccCCCCcEEECCCCCCCc---cCc------ccccCCCCCEEECCCCCCCCc-
Confidence            789999999974 22222     12233568899999999887662   442      345678999999998844321 


Q ss_pred             CchhHHHHHHhHhhhccccceee
Q 009796          439 VPSEYEILLDDLFWIFYPKNLCL  461 (525)
Q Consensus       439 ~~~~~~~~~~~Ll~~~~l~~l~l  461 (525)
                                .+-..+.+++|.+
T Consensus       340 ----------~~~~~~~L~~L~l  352 (597)
T 3oja_B          340 ----------KLSTHHTLKNLTL  352 (597)
T ss_dssp             ----------CCCTTCCCSEEEC
T ss_pred             ----------ChhhcCCCCEEEe
Confidence                      1223457888888

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.57  E-value=2e-15  Score=160.75  Aligned_cols=172  Identities=13%  Similarity=0.011  Sum_probs=84.8

Q ss_pred             CCCCccEEEeeCCCCChhh-hhhhhcCCCCCcEEEecCccchh--HhhhcCcccceEccccccchh----hhcccCCCcc
Q 009796          272 ECPHLRKLVLFLPHFNDQE-FHPLISKFPLLEDLSIISLETLE--RIMISSNRLMHLEVYNCSGLN----RINVDAPNLV  344 (525)
Q Consensus       272 ~l~~L~~L~L~~~~~~~~~-~~~ll~~~~~Le~L~L~~c~~l~--~~~~~~~~L~~L~l~~c~~L~----~l~~~~p~L~  344 (525)
                      .+++|+.|+++++.+++.. ....+.++++|++|+++++....  .....+++|+.|++.++.-..    ......++|+
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  424 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  424 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence            4444555555444444321 12233445555555555543211  001123455555555532110    1123456666


Q ss_pred             eEEEecCCCC----cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCC
Q 009796          345 SFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPL  420 (525)
Q Consensus       345 ~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~  420 (525)
                      .|.++++.+.    ..+..+++|+.++++. +.+.   ...++..+..+++|+.|+++.|.....  .|     . .+..
T Consensus       425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~---~~~~p~~~~~l~~L~~L~l~~n~l~~~--~~-----~-~~~~  492 (570)
T 2z63_A          425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAG-NSFQ---ENFLPDIFTELRNLTFLDLSQCQLEQL--SP-----T-AFNS  492 (570)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTT-CEEG---GGEECSCCTTCTTCCEEECTTSCCCEE--CT-----T-TTTT
T ss_pred             EEeCcCCcccccchhhhhcCCcCcEEECcC-CcCc---cccchhhhhcccCCCEEECCCCccccC--Ch-----h-hhhc
Confidence            6666665432    2334566777777653 1111   011223456677778777777665543  23     1 4566


Q ss_pred             CcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecC
Q 009796          421 QVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSP  463 (525)
Q Consensus       421 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll~~~~l~~l~l~~  463 (525)
                      +++|++|.|.+|.+.+..        ...+-..+.++++.+..
T Consensus       493 l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~  527 (570)
T 2z63_A          493 LSSLQVLNMASNQLKSVP--------DGIFDRLTSLQKIWLHT  527 (570)
T ss_dssp             CTTCCEEECCSSCCSCCC--------TTTTTTCTTCCEEECCS
T ss_pred             ccCCCEEeCCCCcCCCCC--------HHHhhcccCCcEEEecC
Confidence            788888888877433220        01223345688888743

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.56  E-value=2.2e-15  Score=149.45  Aligned_cols=250  Identities=15%  Similarity=0.179  Sum_probs=154.7

Q ss_pred             HHHHHHHHc-CCeEEEEEeecCCCCcccCCccccCC--CCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHH
Q 009796          126 KWVELAMEN-GVKELDFEVITDKNSVNALPQTIFSA--KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQ  201 (525)
Q Consensus       126 ~wl~~~~~~-~l~~L~l~~~~~~~~~~~lp~~l~~~--~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~  201 (525)
                      +|-..+..+ .++.+++..  ...    -+..+...  ++++.|+++++.+.. ++....+++|++|+|++|.+++..+.
T Consensus        38 ~W~~~~~~~~~~~~l~l~~--~~~----~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~  111 (336)
T 2ast_B           38 RWYRLASDESLWQTLDLTG--KNL----HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH  111 (336)
T ss_dssp             HHHHHHTCSTTSSEEECTT--CBC----CHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHH
T ss_pred             HHHHHhcCchhheeecccc--ccC----CHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHH
Confidence            455444322 477777654  111    13444455  899999999998887 55577899999999999999877788


Q ss_pred             HHHhCCcCccEEEEeecCCCcee--ecccCCCccEEEEeeec--c--ccceEEEeCCCccEEEeccc-c-c--cceeecc
Q 009796          202 SLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLILRFTY--Q--ELESVEIAVPSLQQLELSFS-R-V--PRLLDVA  271 (525)
Q Consensus       202 ~ll~~c~~Le~L~L~~c~~l~~l--~i~~l~~L~~L~l~~c~--~--~l~~~~~~~~~L~~L~l~~~-~-~--~~~~~~~  271 (525)
                      ..+..|++|++|++++|......  .+..+++|++|++++|.  .  .+..+...+++|++|++++| . .  ..+..++
T Consensus       112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  191 (336)
T 2ast_B          112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  191 (336)
T ss_dssp             HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence            99999999999999999642221  24457888888888884  1  12222235777777777777 4 1  1344466


Q ss_pred             CCC-CccEEEeeCC--CCChhhhhhhhcCCCCCcEEEecCccchhHhh----hcCcccceEccccccchhhhcccCCCcc
Q 009796          272 ECP-HLRKLVLFLP--HFNDQEFHPLISKFPLLEDLSIISLETLERIM----ISSNRLMHLEVYNCSGLNRINVDAPNLV  344 (525)
Q Consensus       272 ~l~-~L~~L~L~~~--~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~----~~~~~L~~L~l~~c~~L~~l~~~~p~L~  344 (525)
                      .++ +|+.|+++++  .+++..+...+.++++|++|++++|..++...    ..+++|++|++++|..+..-.       
T Consensus       192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-------  264 (336)
T 2ast_B          192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-------  264 (336)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-------
T ss_pred             hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH-------
Confidence            677 7777777777  56655566666777777777777765432211    113445555554443211000       


Q ss_pred             eEEEecCCCCcccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeee
Q 009796          345 SFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVL  405 (525)
Q Consensus       345 ~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~  405 (525)
                               ...+.++++|+.++++++  +.   ...+..+...++.|   +++.+.....
T Consensus       265 ---------~~~l~~~~~L~~L~l~~~--i~---~~~~~~l~~~l~~L---~l~~n~l~~~  308 (336)
T 2ast_B          265 ---------LLELGEIPTLKTLQVFGI--VP---DGTLQLLKEALPHL---QINCSHFTTI  308 (336)
T ss_dssp             ---------GGGGGGCTTCCEEECTTS--SC---TTCHHHHHHHSTTS---EESCCCSCCT
T ss_pred             ---------HHHHhcCCCCCEEeccCc--cC---HHHHHHHHhhCcce---EEecccCccc
Confidence                     012345778888888642  21   11233343444444   5776665544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.56  E-value=4e-14  Score=151.05  Aligned_cols=255  Identities=19%  Similarity=0.149  Sum_probs=185.8

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~  212 (525)
                      .+++.|++..    .....+|..+.  ++|++|+|++|.+.. +.   .+++|++|+|++|.++.  ++.   .+++|++
T Consensus        40 ~~l~~L~ls~----n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~  105 (622)
T 3g06_A           40 NGNAVLNVGE----SGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLE  105 (622)
T ss_dssp             HCCCEEECCS----SCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC--CCC---CCTTCCE
T ss_pred             CCCcEEEecC----CCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc--CCC---CCCCCCE
Confidence            4788888765    23347777665  799999999999887 43   68999999999998842  222   6899999


Q ss_pred             EEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhh
Q 009796          213 LSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF  291 (525)
Q Consensus       213 L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~  291 (525)
                      |++++|.. ..++. .+++|+.|++++|.  +..+....++|++|++++|. ...+   ..+++|+.|+++++.++.  +
T Consensus       106 L~Ls~N~l-~~l~~-~l~~L~~L~L~~N~--l~~lp~~l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~~N~l~~--l  176 (622)
T 3g06_A          106 LSIFSNPL-THLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLTS--L  176 (622)
T ss_dssp             EEECSCCC-CCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--C
T ss_pred             EECcCCcC-CCCCC-CCCCcCEEECCCCC--CCcCCCCCCCCCEEECcCCcCCCcC---CccCCCCEEECCCCCCCC--C
Confidence            99998853 33333 46899999999885  44444456999999999997 3222   245789999999998886  3


Q ss_pred             hhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCCcccccCCCCceEEEEee
Q 009796          292 HPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNF  371 (525)
Q Consensus       292 ~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~  371 (525)
                      +   ..+++|+.|+++++. ++.+....++|+.|.+.++. +..+....++|+.|.++++.+......+++|+.+++++ 
T Consensus       177 ~---~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~-  250 (622)
T 3g06_A          177 P---MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSG-  250 (622)
T ss_dssp             C---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS-
T ss_pred             c---ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCC-
Confidence            3   567899999999875 44444445789999988753 55555556889999999887652114578899999985 


Q ss_pred             ecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796          372 GDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL  434 (525)
Q Consensus       372 ~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~  434 (525)
                      +.+..     ++   ..+++|+.|+++.|.+.  . +|+      .+..+++|+.|.|.+|.+
T Consensus       251 N~L~~-----lp---~~~~~L~~L~Ls~N~L~--~-lp~------~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          251 NRLTS-----LP---MLPSGLLSLSVYRNQLT--R-LPE------SLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             SCCSC-----CC---CCCTTCCEEECCSSCCC--S-CCG------GGGGSCTTCEEECCSCCC
T ss_pred             CCCCc-----CC---cccccCcEEeCCCCCCC--c-CCH------HHhhccccCEEEecCCCC
Confidence            33321     11   26789999999988766  2 552      355679999999999843

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.56  E-value=3e-14  Score=151.51  Aligned_cols=123  Identities=14%  Similarity=0.077  Sum_probs=67.0

Q ss_pred             cCCCCCcEEEecCccchhHhh---hcCcccceEcccccc--chhh---hcccCCCcceEEEecCCCC-----cccccCCC
Q 009796          296 SKFPLLEDLSIISLETLERIM---ISSNRLMHLEVYNCS--GLNR---INVDAPNLVSFDFEDNPIP-----IVSTNAPC  362 (525)
Q Consensus       296 ~~~~~Le~L~L~~c~~l~~~~---~~~~~L~~L~l~~c~--~L~~---l~~~~p~L~~l~~~g~~~~-----~~~~~~~~  362 (525)
                      ..+++|++|+++++.....+.   ...++|+.|+++++.  .+..   .....++|+.|+++++.+.     ..+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            466777777777664322111   224567777777642  1111   1234577777777766542     12334677


Q ss_pred             CceEEEEeeecCChhccccHHHHHHhc-cccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeec
Q 009796          363 PLNVLFSNFGDIDTHWYLNLMEFIGAF-NQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLY  435 (525)
Q Consensus       363 L~~l~l~~~~~~~~~~~~~l~~~l~~l-~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~  435 (525)
                      |+.++++. +.+..       ..+..+ ++|+.|+++.|...  . +|+      .+..+++|++|+|.+|.+.
T Consensus       430 L~~L~l~~-n~l~~-------~~~~~l~~~L~~L~L~~N~l~--~-ip~------~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          430 ILVLNLSS-NMLTG-------SVFRCLPPKVKVLDLHNNRIM--S-IPK------DVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             CCEEECCS-SCCCG-------GGGSSCCTTCSEEECCSSCCC--C-CCT------TTTSSCCCSEEECCSSCCC
T ss_pred             CCEEECCC-CCCCc-------chhhhhcCcCCEEECCCCcCc--c-cCh------hhcCCCCCCEEECCCCCCC
Confidence            77777764 22221       112233 57777777766554  2 442      3335677777777776443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.55  E-value=7.6e-15  Score=154.60  Aligned_cols=120  Identities=18%  Similarity=0.130  Sum_probs=67.8

Q ss_pred             cCCeEEEEEeecCCCCcccCC-ccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796          134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L  210 (525)
                      .++++|+++.  +  ....++ ..+..+++|++|+|++|.+..  +..+.++++|++|+|++|.++.  ++..  .+++|
T Consensus        21 ~~L~~L~Ls~--n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L   92 (520)
T 2z7x_B           21 QKTTILNISQ--N--YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNL   92 (520)
T ss_dssp             TTCSEEECCS--S--CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE--EECC--CCCCC
T ss_pred             ccccEEECCC--C--cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee--cCcc--ccCCc
Confidence            4666666654  1  122233 355566777777777776665  4456667777777777776631  2221  56777


Q ss_pred             cEEEEeecCCCc-e--eecccCCCccEEEEeeeccccceEE-EeCCCc--cEEEecccc
Q 009796          211 EDLSFFYCFGLK-R--LRISEAHKLKSLILRFTYQELESVE-IAVPSL--QQLELSFSR  263 (525)
Q Consensus       211 e~L~L~~c~~l~-~--l~i~~l~~L~~L~l~~c~~~l~~~~-~~~~~L--~~L~l~~~~  263 (525)
                      ++|++++|.... .  -.+..+++|+.|++++|.  +.... ..+++|  +.|+++++.
T Consensus        93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH--LEKSSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS--CCGGGGGGGTTSCEEEEEEEECT
T ss_pred             cEEeccCCccccccchhhhccCCcceEEEecCcc--cchhhccccccceeeEEEeeccc
Confidence            777777765432 1  234456677777777764  21111 134555  777776653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.55  E-value=1.2e-14  Score=154.73  Aligned_cols=245  Identities=15%  Similarity=0.114  Sum_probs=123.7

Q ss_pred             ccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCcc
Q 009796          155 QTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLK  233 (525)
Q Consensus       155 ~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~  233 (525)
                      ..+..+++|++|++++|.+.. +..+..+ +|++|++++|.+..  ++.  ..+++|++|++.+|..........+++|+
T Consensus       276 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~  350 (570)
T 2z63_A          276 DLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLE  350 (570)
T ss_dssp             TTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCC
T ss_pred             hhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcCCccccccccccCCCCC
Confidence            333444555555555554444 3344444 55555555554421  111  24455555555555433333333445555


Q ss_pred             EEEEeeeccccceEE------EeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEe
Q 009796          234 SLILRFTYQELESVE------IAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI  306 (525)
Q Consensus       234 ~L~l~~c~~~l~~~~------~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L  306 (525)
                      .|++++|.  +..+.      ..+++|++|+++++. ...+..+..+++|+.|+++++.+++......+.++++|++|++
T Consensus       351 ~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          351 FLDLSRNG--LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             EEECCSSC--CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             EEeCcCCc--cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence            55555543  11110      134555555555554 2222234555555555555554443222223444555555555


Q ss_pred             cCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCC-----CcccccCCCCceEEEEeeecCChhcccc
Q 009796          307 ISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPI-----PIVSTNAPCPLNVLFSNFGDIDTHWYLN  381 (525)
Q Consensus       307 ~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~  381 (525)
                      ++|......                  .......++|+.|.+.++.+     |..+..+++|+.++++. +.+..    .
T Consensus       429 ~~n~l~~~~------------------~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~-n~l~~----~  485 (570)
T 2z63_A          429 SHTHTRVAF------------------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQ----L  485 (570)
T ss_dssp             TTSCCEECC------------------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT-SCCCE----E
T ss_pred             cCCcccccc------------------hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC-Ccccc----C
Confidence            544321110                  11112345555555555432     33455688889998874 22222    2


Q ss_pred             HHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccC
Q 009796          382 LMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMD  437 (525)
Q Consensus       382 l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~  437 (525)
                      .+..+..+++|+.|+++.|.....  .|     . .+..+++|+.|++.+|....+
T Consensus       486 ~~~~~~~l~~L~~L~l~~n~l~~~--~~-----~-~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          486 SPTAFNSLSSLQVLNMASNQLKSV--PD-----G-IFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCC--CT-----T-TTTTCTTCCEEECCSSCBCCC
T ss_pred             ChhhhhcccCCCEEeCCCCcCCCC--CH-----H-HhhcccCCcEEEecCCcccCC
Confidence            234457889999999998766543  22     1 356789999999999866554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.54  E-value=7.9e-15  Score=145.10  Aligned_cols=248  Identities=14%  Similarity=0.053  Sum_probs=122.7

Q ss_pred             ccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeeccc
Q 009796          151 NALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISE  228 (525)
Q Consensus       151 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~  228 (525)
                      ..+|..+.  ++|+.|+|++|.+..  +..+.++++|++|+|++|.++.- .+..+..+++|++|++++|.. ..++..-
T Consensus        44 ~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~  119 (330)
T 1xku_A           44 EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQL-KELPEKM  119 (330)
T ss_dssp             CSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCC-SBCCSSC
T ss_pred             cccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEEECCCCcC-CccChhh
Confidence            34554432  567777777777766  33566777777777777766321 123356677777777777642 2332222


Q ss_pred             CCCccEEEEeeec-cccceE-EEeCCCccEEEecccc-c---cceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCc
Q 009796          229 AHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-V---PRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE  302 (525)
Q Consensus       229 l~~L~~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~-~---~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le  302 (525)
                      .++|+.|++++|. ..+..- ...+++|+.|+++++. .   ..+..++.+++|+.|+++++.++.  ++..+  .++|+
T Consensus       120 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~--~~~L~  195 (330)
T 1xku_A          120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQGL--PPSLT  195 (330)
T ss_dssp             CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCSSC--CTTCS
T ss_pred             cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCccc--cccCC
Confidence            3566666666553 111110 1134555555555554 1   222334455555555555555443  11111  14555


Q ss_pred             EEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCC----cccccCCCCceEEEEeeecCChhc
Q 009796          303 DLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHW  378 (525)
Q Consensus       303 ~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~  378 (525)
                      +|+++++.. +.+.                 .......++|+.|.++++.+.    ..+..+++|+.++++. +.+.   
T Consensus       196 ~L~l~~n~l-~~~~-----------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~---  253 (330)
T 1xku_A          196 ELHLDGNKI-TKVD-----------------AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN-NKLV---  253 (330)
T ss_dssp             EEECTTSCC-CEEC-----------------TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS-SCCS---
T ss_pred             EEECCCCcC-CccC-----------------HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC-CcCc---
Confidence            555554321 0000                 011123455555555555442    1344566777777764 2222   


Q ss_pred             cccHHHHHHhccccceEEEEEEeeeeeeeeccccccC-CCCCCCcccceEEEEEee
Q 009796          379 YLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCH-PSLPLQVESLSLFMESFS  433 (525)
Q Consensus       379 ~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~-~~~~~~~~L~~L~L~~~~  433 (525)
                        .++..+..+++|++|+++.|.+..   +|...+.. ........++.|.+.+|.
T Consensus       254 --~lp~~l~~l~~L~~L~l~~N~i~~---~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          254 --KVPGGLADHKYIQVVYLHNNNISA---IGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             --SCCTTTTTCSSCCEEECCSSCCCC---CCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             --cCChhhccCCCcCEEECCCCcCCc---cChhhcCCcccccccccccceEeecCc
Confidence              122234566777777777665543   22222211 011234666777777663

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.52  E-value=1.7e-14  Score=141.83  Aligned_cols=225  Identities=14%  Similarity=0.126  Sum_probs=113.1

Q ss_pred             CCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEe
Q 009796          161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR  238 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~  238 (525)
                      ++|++|+|++|.+..  +..+..+++|++|+|++|.++...  . +..+++|++|++++|. +..+.  ..++|+.|+++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~--~~~~L~~L~l~  107 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL--VGPSIETLHAA  107 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE--ECTTCCEEECC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc--CCCCcCEEECC
Confidence            345555555555444  123444555555555555442110  0 3445555555555543 12221  12555555555


Q ss_pred             eeccccceEEE-eCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHh
Q 009796          239 FTYQELESVEI-AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERI  315 (525)
Q Consensus       239 ~c~~~l~~~~~-~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~  315 (525)
                      +|.  +..+.. .+++|++|+++++.  ...+..++.+++|+.|+++++.+++.....+...+++|++|+++++.. +.+
T Consensus       108 ~n~--l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~  184 (317)
T 3o53_A          108 NNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDV  184 (317)
T ss_dssp             SSC--CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEE
T ss_pred             CCc--cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-ccc
Confidence            553  222221 34556666666655  222334555666666666666665543334444556666666665532 111


Q ss_pred             h--hcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC---cccccCCCCceEEEEeeecCChhccccHHHHHHh
Q 009796          316 M--ISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP---IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGA  388 (525)
Q Consensus       316 ~--~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~  388 (525)
                      .  ...++|+.|+++++.  .+..-....++|+.|.++++.+.   ..+..+++|+.+++++ +.+.   ...+..++..
T Consensus       185 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~-N~~~---~~~~~~~~~~  260 (317)
T 3o53_A          185 KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG-NGFH---CGTLRDFFSK  260 (317)
T ss_dssp             ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT-CCCB---HHHHHHHHHT
T ss_pred             ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC-CCcc---CcCHHHHHhc
Confidence            0  113455556555532  11111224566777777776553   3344577888888874 2222   1346677788


Q ss_pred             ccccceEEEE
Q 009796          389 FNQIGELHLS  398 (525)
Q Consensus       389 l~~L~~L~L~  398 (525)
                      +++|+.|.+.
T Consensus       261 ~~~L~~l~l~  270 (317)
T 3o53_A          261 NQRVQTVAKQ  270 (317)
T ss_dssp             CHHHHHHHHH
T ss_pred             cccceEEECC
Confidence            8888877766

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.51  E-value=4.8e-14  Score=137.82  Aligned_cols=220  Identities=16%  Similarity=0.111  Sum_probs=153.0

Q ss_pred             CcccCCccccCCCCccEEEecCCcCCC-CC-CCCCCCcccEEEeceeeech-HHHHHHHhCCcCccEEEEeecCCCce-e
Q 009796          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-PS-HCANLQSLKKLSLDEVYVND-QMVQSLVRECRVLEDLSFFYCFGLKR-L  224 (525)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~-~~~~l~~L~~L~L~~~~~~~-~~l~~ll~~c~~Le~L~L~~c~~l~~-l  224 (525)
                      ....+|..+.  ++|++|+|++|.+.. +. .+.++++|++|+|++|.++. ......+..+++|++|++++|....- .
T Consensus        18 ~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~   95 (306)
T 2z66_A           18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS   95 (306)
T ss_dssp             CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE
T ss_pred             CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChh
Confidence            3455666543  689999999999887 43 46889999999999998732 11223355789999999999864221 1


Q ss_pred             ecccCCCccEEEEeeec-cccce--EEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCC
Q 009796          225 RISEAHKLKSLILRFTY-QELES--VEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFP  299 (525)
Q Consensus       225 ~i~~l~~L~~L~l~~c~-~~l~~--~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~  299 (525)
                      .+..+++|+.|++++|. ..+..  ....+++|++|+++++.  ...+..++.+++|+.|+++++.+++...+..+..++
T Consensus        96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  175 (306)
T 2z66_A           96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  175 (306)
T ss_dssp             EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence            24568999999999886 22222  22357899999999987  334456788899999999999887654666788899


Q ss_pred             CCcEEEecCccchh---HhhhcCcccceEcccccc--chhh-hcccCCCcceEEEecCCCC----cccccC-CCCceEEE
Q 009796          300 LLEDLSIISLETLE---RIMISSNRLMHLEVYNCS--GLNR-INVDAPNLVSFDFEDNPIP----IVSTNA-PCPLNVLF  368 (525)
Q Consensus       300 ~Le~L~L~~c~~l~---~~~~~~~~L~~L~l~~c~--~L~~-l~~~~p~L~~l~~~g~~~~----~~~~~~-~~L~~l~l  368 (525)
                      +|+.|+++++....   ......++|+.|+++++.  .+.. .....++|+.|+++++.+.    ..+..+ ++|+.+++
T Consensus       176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L  255 (306)
T 2z66_A          176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  255 (306)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred             CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence            99999999875321   112235788888888753  1211 1234678888888887653    233345 47888888


Q ss_pred             Ee
Q 009796          369 SN  370 (525)
Q Consensus       369 ~~  370 (525)
                      ++
T Consensus       256 ~~  257 (306)
T 2z66_A          256 TQ  257 (306)
T ss_dssp             TT
T ss_pred             cC
Confidence            64

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.51  E-value=1.8e-14  Score=150.14  Aligned_cols=226  Identities=14%  Similarity=0.131  Sum_probs=143.9

Q ss_pred             CCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEe
Q 009796          161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR  238 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~  238 (525)
                      ++|++|+|++|.+..  +..+..+++|++|+|++|.++... +  +..+++|++|+|++|. +..+..  .++|+.|+++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~~--~~~L~~L~L~  107 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELLV--GPSIETLHAA  107 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEEE--CTTCCEEECC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCCC--CCCcCEEECc
Confidence            477778887777766  345677777888888777763211 1  6677778888877774 233322  3778888887


Q ss_pred             eeccccceEE-EeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHh
Q 009796          239 FTYQELESVE-IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERI  315 (525)
Q Consensus       239 ~c~~~l~~~~-~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~  315 (525)
                      +|.  +..+. ..+++|+.|++++|.  ...+..++.+++|+.|+|++|.+++.....+..++++|+.|+|+++......
T Consensus       108 ~N~--l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~  185 (487)
T 3oja_A          108 NNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (487)
T ss_dssp             SSC--CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CCc--CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence            774  33332 246778888888877  3345567778888888888888877544555557788888888876521111


Q ss_pred             -hhcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC---cccccCCCCceEEEEeeecCChhccccHHHHHHhc
Q 009796          316 -MISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP---IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAF  389 (525)
Q Consensus       316 -~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l  389 (525)
                       ...+++|+.|+++++.  .+..-....++|+.|.++++.+.   ..+..+++|+.+++++ +.+.   ...++.++..+
T Consensus       186 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~-N~l~---c~~~~~~~~~l  261 (487)
T 3oja_A          186 GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG-NGFH---CGTLRDFFSKN  261 (487)
T ss_dssp             CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT-CCBC---HHHHHHHHTTC
T ss_pred             ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCC-CCCc---CcchHHHHHhC
Confidence             1125677778777643  12111235678888888887653   3444678899999874 2222   23455667777


Q ss_pred             cccceEEEE
Q 009796          390 NQIGELHLS  398 (525)
Q Consensus       390 ~~L~~L~L~  398 (525)
                      +.|+.+.+.
T Consensus       262 ~~L~~l~~~  270 (487)
T 3oja_A          262 QRVQTVAKQ  270 (487)
T ss_dssp             HHHHHHHHH
T ss_pred             CCCcEEecc
Confidence            777766553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.51  E-value=3.2e-14  Score=142.08  Aligned_cols=170  Identities=16%  Similarity=0.178  Sum_probs=130.9

Q ss_pred             cCCeEEEEEeecCCCCcccCCc-cccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796          134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L  210 (525)
                      .++++|++..  +  ....+|. .+..+++|++|++++|.+..  +..+.++++|++|+|++|.++. .....+.++++|
T Consensus        52 ~~L~~L~l~~--n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L  126 (353)
T 2z80_A           52 EAVKSLDLSN--N--RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSL  126 (353)
T ss_dssp             TTCCEEECTT--S--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTC
T ss_pred             ccCcEEECCC--C--cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccC
Confidence            4789998865  2  2334554 67789999999999999887  4568899999999999998853 223457899999


Q ss_pred             cEEEEeecCCCc--e-eecccCCCccEEEEeeeccccceEE----EeCCCccEEEecccc--ccceeeccCCCCccEEEe
Q 009796          211 EDLSFFYCFGLK--R-LRISEAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVL  281 (525)
Q Consensus       211 e~L~L~~c~~l~--~-l~i~~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L  281 (525)
                      ++|++++|....  . -.+..+++|+.|++++|. .+..+.    ..+++|++|+++++.  ...+..++.+++|+.|++
T Consensus       127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  205 (353)
T 2z80_A          127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL  205 (353)
T ss_dssp             SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             CEEECCCCCCcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence            999999985432  1 134568999999999984 233331    257899999999998  334567889999999999


Q ss_pred             eCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796          282 FLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       282 ~~~~~~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      +++.++.. ....+..+++|+.|+++++.
T Consensus       206 ~~n~l~~~-~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          206 HMKQHILL-LEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             ECSCSTTH-HHHHHHHTTTEEEEEEESCB
T ss_pred             CCCccccc-hhhhhhhcccccEEECCCCc
Confidence            99998653 34456678999999999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.48  E-value=6.2e-14  Score=152.61  Aligned_cols=269  Identities=16%  Similarity=0.126  Sum_probs=129.8

Q ss_pred             ccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce--eecccCCCc
Q 009796          157 IFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR--LRISEAHKL  232 (525)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~--l~i~~l~~L  232 (525)
                      +..+++|++|+|++|.+..  +..+.++++|++|+|++|.+..- ....++++++|++|++++|.....  -.+.++++|
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  123 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL  123 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence            4445555555555555544  33344555555555555544210 111244555555555555532111  123344555


Q ss_pred             cEEEEeeec-cccc-eEEEeCCCccEEEecccc--ccceee--ccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEe
Q 009796          233 KSLILRFTY-QELE-SVEIAVPSLQQLELSFSR--VPRLLD--VAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI  306 (525)
Q Consensus       233 ~~L~l~~c~-~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L  306 (525)
                      +.|++++|. .... .....+++|++|+++++.  ...+..  ...+++|+.|+++++.+++. ....+..+++|+.|++
T Consensus       124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l  202 (680)
T 1ziw_A          124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFL  202 (680)
T ss_dssp             CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB-CTTGGGGSSEECEEEC
T ss_pred             CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc-Chhhhhhhhhhhhhhc
Confidence            555555553 1111 111134555555555554  111111  12335555555555554442 2233444555555555


Q ss_pred             cCccchhHh------hhcCcccceEccccccch----hhh-cccCCCcceEEEecCCCC----cccccCCCCceEEEEee
Q 009796          307 ISLETLERI------MISSNRLMHLEVYNCSGL----NRI-NVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNF  371 (525)
Q Consensus       307 ~~c~~l~~~------~~~~~~L~~L~l~~c~~L----~~l-~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~  371 (525)
                      .++......      ....++|+.|+++++.--    ..+ ....++|+.|+++++.+.    ..+..+++|+.++++. 
T Consensus       203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-  281 (680)
T 1ziw_A          203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY-  281 (680)
T ss_dssp             TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-
T ss_pred             cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC-
Confidence            544321110      012356777777764311    011 011245888888887653    3455678888888874 


Q ss_pred             ecCChhccccHHHHHHhccccceEEEEEEeeeeee---eeccccccCCCCCCCcccceEEEEEeee
Q 009796          372 GDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLF---NIDEFRSCHPSLPLQVESLSLFMESFSL  434 (525)
Q Consensus       372 ~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~---~lp~~~~~~~~~~~~~~L~~L~L~~~~~  434 (525)
                      +.+.    ......+..+++|+.|+++.+.....+   .+|. +... .+..+++|++|.+..+..
T Consensus       282 n~l~----~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~-i~~~-~~~~l~~L~~L~l~~n~l  341 (680)
T 1ziw_A          282 NNIQ----HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK-IDDF-SFQWLKCLEHLNMEDNDI  341 (680)
T ss_dssp             CCBS----EECTTTTTTCTTCCEEECTTCBCCC------CCE-ECTT-TTTTCTTCCEEECCSCCB
T ss_pred             CccC----ccChhhhcCCCCccEEeccchhhhcccccccccc-cChh-hcccCCCCCEEECCCCcc
Confidence            2222    223344577888888888644322110   0221 1111 456788999999987744

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.48  E-value=2.2e-14  Score=141.96  Aligned_cols=238  Identities=12%  Similarity=0.003  Sum_probs=114.4

Q ss_pred             CCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEe
Q 009796          161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR  238 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~  238 (525)
                      ++|++|++++|.+..  +..+.++++|++|+|++|.++.- ....+.++++|++|++++|.. ..++..-.+        
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~--------  123 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNHL-VEIPPNLPS--------  123 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSCC-CSCCSSCCT--------
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCcC-CccCccccc--------
Confidence            456666666665554  33455666666666666655211 122345556666666655532 122211123        


Q ss_pred             eeccccceEEEeCCCccEEEecccc-ccc-eeeccCCCCccEEEeeCCCCChh-hhhhhhcCCCCCcEEEecCccchhHh
Q 009796          239 FTYQELESVEIAVPSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLPHFNDQ-EFHPLISKFPLLEDLSIISLETLERI  315 (525)
Q Consensus       239 ~c~~~l~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~l~~L~~L~L~~~~~~~~-~~~~ll~~~~~Le~L~L~~c~~l~~~  315 (525)
                                    +|++|+++++. ... +..++.+++|+.|+++++.++.. .....+..+ +|+.|+++++.. +.+
T Consensus       124 --------------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l-~~l  187 (332)
T 2ft3_A          124 --------------SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL-TGI  187 (332)
T ss_dssp             --------------TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC-SSC
T ss_pred             --------------cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC-Ccc
Confidence                          44444444444 111 12244555555555555554321 112223333 555555554431 111


Q ss_pred             hh-cCcccceEcccccc--chh-hhcccCCCcceEEEecCCCC----cccccCCCCceEEEEeeecCChhccccHHHHHH
Q 009796          316 MI-SSNRLMHLEVYNCS--GLN-RINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIG  387 (525)
Q Consensus       316 ~~-~~~~L~~L~l~~c~--~L~-~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~  387 (525)
                      .. .+++|+.|+++++.  .+. ......++|+.|.++++.+.    ..+..+++|+.++++. +.+.     .++..+.
T Consensus       188 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~-----~lp~~l~  261 (332)
T 2ft3_A          188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN-NKLS-----RVPAGLP  261 (332)
T ss_dssp             CSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS-SCCC-----BCCTTGG
T ss_pred             CccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC-CcCe-----ecChhhh
Confidence            11 12345555554432  110 11123456666666665542    2345677888888874 2222     1223356


Q ss_pred             hccccceEEEEEEeeeeeeeeccccccC-CCCCCCcccceEEEEEee
Q 009796          388 AFNQIGELHLSLNYKQVLFNIDEFRSCH-PSLPLQVESLSLFMESFS  433 (525)
Q Consensus       388 ~l~~L~~L~L~~~~~~~~~~lp~~~~~~-~~~~~~~~L~~L~L~~~~  433 (525)
                      .+++|+.|+++.|.+..   +|...... .....+..|+.|.+.+|.
T Consensus       262 ~l~~L~~L~l~~N~l~~---~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITK---VGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             GCTTCCEEECCSSCCCB---CCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             cCccCCEEECCCCCCCc---cChhHccccccccccccccceEeecCc
Confidence            78888888888776654   22222111 011235678888888773

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.47  E-value=8e-14  Score=143.59  Aligned_cols=212  Identities=17%  Similarity=0.157  Sum_probs=131.8

Q ss_pred             CcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee--
Q 009796          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--  224 (525)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l--  224 (525)
                      ....+|..+.  ++++.|+|++|.+..  +..+.++++|++|+|++|.+..- ....+.++++|++|+|++|.. ..+  
T Consensus        54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l-~~~~~  129 (440)
T 3zyj_A           54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRL-TTIPN  129 (440)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCC-SSCCT
T ss_pred             CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcC-CeeCH
Confidence            3455666554  578888888888776  46677888888888888877321 123466788888888888753 222  


Q ss_pred             -ecccCCCccEEEEeeeccccceEE----EeCCCccEEEecccc--cc-ceeeccCCCCccEEEeeCCCCChhhhhhhhc
Q 009796          225 -RISEAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSR--VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLIS  296 (525)
Q Consensus       225 -~i~~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~--~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~  296 (525)
                       .+..+++|+.|++++|.  +..+.    ..+++|++|+++++.  .. ....+.++++|+.|+++++.++.  ++ .+.
T Consensus       130 ~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~  204 (440)
T 3zyj_A          130 GAFVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLT  204 (440)
T ss_dssp             TTSCSCSSCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCT
T ss_pred             hHhhccccCceeeCCCCc--ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccC
Confidence             24466788888888774  33221    146788888887754  21 22246777888888888877765  22 256


Q ss_pred             CCCCCcEEEecCccchh---HhhhcCcccceEccccccchhhh----cccCCCcceEEEecCCCC----cccccCCCCce
Q 009796          297 KFPLLEDLSIISLETLE---RIMISSNRLMHLEVYNCSGLNRI----NVDAPNLVSFDFEDNPIP----IVSTNAPCPLN  365 (525)
Q Consensus       297 ~~~~Le~L~L~~c~~l~---~~~~~~~~L~~L~l~~c~~L~~l----~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~  365 (525)
                      .+++|+.|+|+++....   .....+++|+.|++.++. +..+    ....++|+.|+++++.+.    ..+..+++|+.
T Consensus       205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  283 (440)
T 3zyj_A          205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER  283 (440)
T ss_dssp             TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred             CCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence            67778888887764211   111224566666666532 2111    124567777777776553    22335677777


Q ss_pred             EEEEe
Q 009796          366 VLFSN  370 (525)
Q Consensus       366 l~l~~  370 (525)
                      ++++.
T Consensus       284 L~L~~  288 (440)
T 3zyj_A          284 IHLHH  288 (440)
T ss_dssp             EECCS
T ss_pred             EEcCC
Confidence            77764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.46  E-value=3.6e-13  Score=143.68  Aligned_cols=235  Identities=16%  Similarity=0.068  Sum_probs=158.1

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~  212 (525)
                      .+++.|++..  +  ....+|.   .+++|++|+|++|.+.. +.   .+++|++|+|++|.++.  ++.   .+++|++
T Consensus        61 ~~L~~L~L~~--N--~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~  125 (622)
T 3g06_A           61 AHITTLVIPD--N--NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH--LPA---LPSGLCK  125 (622)
T ss_dssp             TTCSEEEECS--C--CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC--CCC---CCTTCCE
T ss_pred             CCCcEEEecC--C--CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC--CCC---CCCCcCE
Confidence            5899999876  2  2335665   46899999999998886 33   78999999999998742  121   5788999


Q ss_pred             EEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhh
Q 009796          213 LSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF  291 (525)
Q Consensus       213 L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~  291 (525)
                      |++++|.. ..++. .+++|+.|++++|.  +..+....++|+.|+++++. ...+   ..+++|+.|++++|.+++  +
T Consensus       126 L~L~~N~l-~~lp~-~l~~L~~L~Ls~N~--l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~--l  196 (622)
T 3g06_A          126 LWIFGNQL-TSLPV-LPPGLQELSVSDNQ--LASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS--L  196 (622)
T ss_dssp             EECCSSCC-SCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--C
T ss_pred             EECCCCCC-CcCCC-CCCCCCEEECcCCc--CCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC--C
Confidence            99988853 33333 25889999999885  33332345788888888887 3333   556788888888887765  2


Q ss_pred             hhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCC-cccccCCCCceEEEEe
Q 009796          292 HPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP-IVSTNAPCPLNVLFSN  370 (525)
Q Consensus       292 ~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~  370 (525)
                      +   ...++|+.|+++++. ++.+...+++|+.|+++++ ++..+....++|+.|.++++.+. +.. .+++|+.+++++
T Consensus       197 ~---~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~L~~lp~-~~~~L~~L~Ls~  270 (622)
T 3g06_A          197 P---TLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPM-LPSGLLSLSVYR  270 (622)
T ss_dssp             C---CCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCS
T ss_pred             C---CccchhhEEECcCCc-ccccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCCCCcCCc-ccccCcEEeCCC
Confidence            2   234678888887764 3333333467888887764 45555556677888888777654 111 466778888764


Q ss_pred             eecCChhccccHHHHHHhccccceEEEEEEeeee
Q 009796          371 FGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQV  404 (525)
Q Consensus       371 ~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~  404 (525)
                       +.+.     .++..+.++++|+.|+|+.|.+..
T Consensus       271 -N~L~-----~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          271 -NQLT-----RLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             -SCCC-----SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             -CCCC-----cCCHHHhhccccCEEEecCCCCCC
Confidence             2222     123345677888888887776654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.46  E-value=8.5e-14  Score=143.90  Aligned_cols=212  Identities=19%  Similarity=0.161  Sum_probs=115.9

Q ss_pred             cccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--
Q 009796          150 VNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--  225 (525)
Q Consensus       150 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~--  225 (525)
                      ...+|..+.  ++|++|+|++|.+..  +..+.++++|++|+|++|.+..- ....+.++++|++|+|++|.. ..+.  
T Consensus        66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~  141 (452)
T 3zyi_A           66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWL-TVIPSG  141 (452)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC-SBCCTT
T ss_pred             cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcC-CccChh
Confidence            344554433  567777777777665  45566777777777777766321 123356677777777777653 2221  


Q ss_pred             -cccCCCccEEEEeeeccccceEE----EeCCCccEEEecccc--ccc-eeeccCCCCccEEEeeCCCCChhhhhhhhcC
Q 009796          226 -ISEAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSR--VPR-LLDVAECPHLRKLVLFLPHFNDQEFHPLISK  297 (525)
Q Consensus       226 -i~~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~--~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~  297 (525)
                       +..+++|+.|++++|.  +..+.    ..+++|++|+++++.  ... ...+..+++|+.|+++++.+++  ++ .+..
T Consensus       142 ~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~  216 (452)
T 3zyi_A          142 AFEYLSKLRELWLRNNP--IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-NLTP  216 (452)
T ss_dssp             TSSSCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--CC-CCTT
T ss_pred             hhcccCCCCEEECCCCC--cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--cc-cccc
Confidence             3346677777777664  22221    145667777776644  111 1235666677777777666654  22 2455


Q ss_pred             CCCCcEEEecCccch---hHhhhcCcccceEccccccc--h-hhhcccCCCcceEEEecCCCC----cccccCCCCceEE
Q 009796          298 FPLLEDLSIISLETL---ERIMISSNRLMHLEVYNCSG--L-NRINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVL  367 (525)
Q Consensus       298 ~~~Le~L~L~~c~~l---~~~~~~~~~L~~L~l~~c~~--L-~~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~  367 (525)
                      +++|+.|+|+++...   ......+++|+.|+++++.-  + .......++|+.|+++++.+.    ..+..+++|+.++
T Consensus       217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  296 (452)
T 3zyi_A          217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH  296 (452)
T ss_dssp             CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred             cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence            666777776665321   11112234555555554321  1 111123466666666666542    2233466677777


Q ss_pred             EEe
Q 009796          368 FSN  370 (525)
Q Consensus       368 l~~  370 (525)
                      ++.
T Consensus       297 L~~  299 (452)
T 3zyi_A          297 LHH  299 (452)
T ss_dssp             CCS
T ss_pred             ccC
Confidence            753

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.45  E-value=6.3e-13  Score=131.35  Aligned_cols=252  Identities=13%  Similarity=0.090  Sum_probs=128.6

Q ss_pred             cCCeEEEEEeecCCCCcccCCc-cccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796          134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L  210 (525)
                      ..++.|++..  +  ....++. .+..+++|++|+|++|.+..  +..+..+++|++|+|++|.++.  ++.  ...++|
T Consensus        52 ~~l~~L~L~~--n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~--~~~~~L  123 (330)
T 1xku_A           52 PDTALLDLQN--N--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTL  123 (330)
T ss_dssp             TTCCEEECCS--S--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTC
T ss_pred             CCCeEEECCC--C--cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cCh--hhcccc
Confidence            3566666544  1  1223333 45566677777777766665  4456666777777777666531  111  112566


Q ss_pred             cEEEEeecCCCcee--ecccCCCccEEEEeeec-cc--cc-eEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeC
Q 009796          211 EDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QE--LE-SVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFL  283 (525)
Q Consensus       211 e~L~L~~c~~l~~l--~i~~l~~L~~L~l~~c~-~~--l~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~  283 (525)
                      ++|++++|......  .+.++++|+.|++++|. ..  .. .....+++|++|+++++. ...+..+  .++|+.|++++
T Consensus       124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~  201 (330)
T 1xku_A          124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDG  201 (330)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTT
T ss_pred             cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCC
Confidence            66666666432111  13445666666666664 10  11 111235666666666665 2222222  25666666666


Q ss_pred             CCCChhhhhhhhcCCCCCcEEEecCccchhH---hhhcCcccceEccccccchhhh---cccCCCcceEEEecCCCC---
Q 009796          284 PHFNDQEFHPLISKFPLLEDLSIISLETLER---IMISSNRLMHLEVYNCSGLNRI---NVDAPNLVSFDFEDNPIP---  354 (525)
Q Consensus       284 ~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~---~~~~~~~L~~L~l~~c~~L~~l---~~~~p~L~~l~~~g~~~~---  354 (525)
                      +.+++. ....+.++++|+.|+++++.....   ....+++|+.|+++++. +..+   ....++|+.|.++++.+.   
T Consensus       202 n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          202 NKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIG  279 (330)
T ss_dssp             SCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             CcCCcc-CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccC
Confidence            666553 233455666666666666532111   11224566666666642 2121   134567777777776553   


Q ss_pred             -cccc------cCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEE
Q 009796          355 -IVST------NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLN  400 (525)
Q Consensus       355 -~~~~------~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~  400 (525)
                       ..+.      ..++++.+++.+ +.....  ...+..+..+++++.++++.|
T Consensus       280 ~~~f~~~~~~~~~~~l~~l~l~~-N~~~~~--~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          280 SNDFCPPGYNTKKASYSGVSLFS-NPVQYW--EIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             TTSSSCSSCCTTSCCCSEEECCS-SSSCGG--GSCGGGGTTCCCGGGEEC---
T ss_pred             hhhcCCcccccccccccceEeec-Cccccc--ccCccccccccceeEEEeccc
Confidence             1111      135677788764 333221  112234566788888887754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.45  E-value=3.6e-13  Score=143.19  Aligned_cols=152  Identities=13%  Similarity=0.058  Sum_probs=107.6

Q ss_pred             cCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc--hhHh---hhcCcccceEccccccchh----hhcccCC
Q 009796          271 AECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET--LERI---MISSNRLMHLEVYNCSGLN----RINVDAP  341 (525)
Q Consensus       271 ~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~--l~~~---~~~~~~L~~L~l~~c~~L~----~l~~~~p  341 (525)
                      +.+++|+.|+++++.+++. ....+.++++|+.|+++++..  +..+   ....++|+.|+++++.--.    ......+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            6788999999999999874 455678999999999998753  2222   2346889999999864211    1223468


Q ss_pred             CcceEEEecCCCCc-ccccC-CCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCC
Q 009796          342 NLVSFDFEDNPIPI-VSTNA-PCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLP  419 (525)
Q Consensus       342 ~L~~l~~~g~~~~~-~~~~~-~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~  419 (525)
                      +|+.|.++++.+.. ....+ ++|+.++++. +.+.     .++..+..+++|+.|+++.|....   +|+.     .+.
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~-N~l~-----~ip~~~~~l~~L~~L~L~~N~l~~---l~~~-----~~~  494 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHN-NRIM-----SIPKDVTHLQALQELNVASNQLKS---VPDG-----VFD  494 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCCTTCSEEECCS-SCCC-----CCCTTTTSSCCCSEEECCSSCCCC---CCTT-----STT
T ss_pred             cCCEEECCCCCCCcchhhhhcCcCCEEECCC-CcCc-----ccChhhcCCCCCCEEECCCCCCCC---CCHH-----HHh
Confidence            99999999987642 22233 6899999985 3332     122223488999999999887763   5522     256


Q ss_pred             CCcccceEEEEEeeeccC
Q 009796          420 LQVESLSLFMESFSLYMD  437 (525)
Q Consensus       420 ~~~~L~~L~L~~~~~~~~  437 (525)
                      .+++|++|+|.+|....+
T Consensus       495 ~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          495 RLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             TCTTCCCEECCSCCBCCC
T ss_pred             cCCCCCEEEecCCCcCCC
Confidence            789999999999855544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.45  E-value=2.5e-13  Score=140.41  Aligned_cols=211  Identities=17%  Similarity=0.138  Sum_probs=155.3

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le  211 (525)
                      .+++.|++..  + ......|..+..+++|++|+|++|.+..  +..+.++++|++|+|++|.++.- ....+.++++|+
T Consensus        75 ~~l~~L~L~~--n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~  150 (452)
T 3zyi_A           75 SNTRYLNLME--N-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLR  150 (452)
T ss_dssp             TTCSEEECCS--S-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCC
T ss_pred             CCccEEECcC--C-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCC
Confidence            4788888865  2 2222335567789999999999998887  56778899999999999987421 233467899999


Q ss_pred             EEEEeecCCCcee---ecccCCCccEEEEeeeccccceEEE----eCCCccEEEeccccccceeeccCCCCccEEEeeCC
Q 009796          212 DLSFFYCFGLKRL---RISEAHKLKSLILRFTYQELESVEI----AVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLP  284 (525)
Q Consensus       212 ~L~L~~c~~l~~l---~i~~l~~L~~L~l~~c~~~l~~~~~----~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~  284 (525)
                      +|+|++|.. ..+   .+..+++|+.|++++|. .+..+..    .+++|++|++++|.......+..+++|+.|+|++|
T Consensus       151 ~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          151 ELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN  228 (452)
T ss_dssp             EEECCSCCC-CEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTS
T ss_pred             EEECCCCCc-ceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCC
Confidence            999999864 333   24567999999999876 4444432    57899999999998322346888999999999999


Q ss_pred             CCChhhhhhhhcCCCCCcEEEecCccchh---HhhhcCcccceEccccccchhhh----cccCCCcceEEEecCC
Q 009796          285 HFNDQEFHPLISKFPLLEDLSIISLETLE---RIMISSNRLMHLEVYNCSGLNRI----NVDAPNLVSFDFEDNP  352 (525)
Q Consensus       285 ~~~~~~~~~ll~~~~~Le~L~L~~c~~l~---~~~~~~~~L~~L~l~~c~~L~~l----~~~~p~L~~l~~~g~~  352 (525)
                      .+++. ....+.++++|+.|+|+++....   .....+++|+.|+++++. +..+    ....++|+.|.+.+++
T Consensus       229 ~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          229 HFPEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CCSEE-CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             cCccc-CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence            98874 45567889999999999875321   112235789999998752 3322    2346889999998885

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.45  E-value=5.8e-14  Score=137.77  Aligned_cols=191  Identities=12%  Similarity=0.032  Sum_probs=140.7

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le  211 (525)
                      .++++|++..  .......+|..+..+++|++|+|++|.+.+  +..+.++++|++|+|++|.+.. .++..+..+++|+
T Consensus        76 ~~L~~L~L~~--~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~  152 (313)
T 1ogq_A           76 PYLNFLYIGG--INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLV  152 (313)
T ss_dssp             TTCSEEEEEE--ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCC
T ss_pred             CCCCeeeCCC--CCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCCCC
Confidence            5899999983  123345788889999999999999999975  7778899999999999999853 2345578899999


Q ss_pred             EEEEeecCCCcee--ecccCC-CccEEEEeeec-c-ccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCC
Q 009796          212 DLSFFYCFGLKRL--RISEAH-KLKSLILRFTY-Q-ELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLP  284 (525)
Q Consensus       212 ~L~L~~c~~l~~l--~i~~l~-~L~~L~l~~c~-~-~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~  284 (525)
                      +|++++|.....+  .+..++ +|+.|++++|. . ........++ |+.|+++++.  ...+..++.+++|+.|+++++
T Consensus       153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  231 (313)
T 1ogq_A          153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence            9999999754333  244566 99999999986 1 1111111233 9999999998  456667889999999999999


Q ss_pred             CCChhhhhhhhcCCCCCcEEEecCccchhH---hhhcCcccceEccccc
Q 009796          285 HFNDQEFHPLISKFPLLEDLSIISLETLER---IMISSNRLMHLEVYNC  330 (525)
Q Consensus       285 ~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~---~~~~~~~L~~L~l~~c  330 (525)
                      .+++. +.. +..+++|++|+++++.....   .....++|+.|+++++
T Consensus       232 ~l~~~-~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          232 SLAFD-LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             EECCB-GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             ceeee-cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence            98864 223 67889999999998753212   1222455666666553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.43  E-value=3.3e-13  Score=139.32  Aligned_cols=237  Identities=17%  Similarity=0.087  Sum_probs=129.9

Q ss_pred             CCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeee
Q 009796          161 KLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFT  240 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c  240 (525)
                      ++|++|++++|.+...+.+.++++|++|++++|.++.  ++.   ..++|++|++++|....--.+.++++|+.|++++|
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cCC---CcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence            4677777777766662246667777777777776532  111   22467777777764322113455677777777777


Q ss_pred             ccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhcC
Q 009796          241 YQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISS  319 (525)
Q Consensus       241 ~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~~  319 (525)
                      .  +..+....++|++|++++|. ...+ .++.+++|+.|+++++.+++  ++.   ..++|+.|+++++. ++.+....
T Consensus       206 ~--l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~--l~~---~~~~L~~L~l~~N~-l~~l~~~~  276 (454)
T 1jl5_A          206 S--LKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT--LPD---LPPSLEALNVRDNY-LTDLPELP  276 (454)
T ss_dssp             C--CSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--CCS---CCTTCCEEECCSSC-CSCCCCCC
T ss_pred             c--CCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc--ccc---cccccCEEECCCCc-ccccCccc
Confidence            4  22222223577788887777 3333 47777788888887777665  222   24677777777654 22232234


Q ss_pred             cccceEccccccchhhhcccCCCcceEEEecCCCCcccccC-CCCceEEEEeeecCChhccccHHHHHHhccccceEEEE
Q 009796          320 NRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNA-PCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLS  398 (525)
Q Consensus       320 ~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~  398 (525)
                      ++|+.|+++++. +..+....++|+.|.++++.+.. +... ++|+.++++. +.+..        +...+++|++|+++
T Consensus       277 ~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~-N~l~~--------lp~~~~~L~~L~L~  345 (454)
T 1jl5_A          277 QSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRS-LCDLPPSLEELNVSN-NKLIE--------LPALPPRLERLIAS  345 (454)
T ss_dssp             TTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSE-ECCCCTTCCEEECCS-SCCSC--------CCCCCTTCCEEECC
T ss_pred             CcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCc-ccCCcCcCCEEECCC-Ccccc--------ccccCCcCCEEECC
Confidence            567777776643 32222223566666666654431 1122 3566666653 22111        11224666666666


Q ss_pred             EEeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009796          399 LNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL  434 (525)
Q Consensus       399 ~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~~  434 (525)
                      .|....   +|       .  .+.+|++|++..|.+
T Consensus       346 ~N~l~~---lp-------~--~l~~L~~L~L~~N~l  369 (454)
T 1jl5_A          346 FNHLAE---VP-------E--LPQNLKQLHVEYNPL  369 (454)
T ss_dssp             SSCCSC---CC-------C--CCTTCCEEECCSSCC
T ss_pred             CCcccc---cc-------c--hhhhccEEECCCCCC
Confidence            554431   33       1  245666666665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.43  E-value=5e-13  Score=137.60  Aligned_cols=212  Identities=14%  Similarity=0.103  Sum_probs=152.6

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le  211 (525)
                      .+++.|++..  + ......+..+..+++|++|+|++|.+..  +..+.++++|++|+|++|.++.- ....+..+++|+
T Consensus        64 ~~l~~L~L~~--n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~  139 (440)
T 3zyj_A           64 TNTRLLNLHE--N-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLK  139 (440)
T ss_dssp             TTCSEEECCS--C-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCC
T ss_pred             CCCcEEEccC--C-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCc
Confidence            4788888765  2 1122233566788999999999998877  45678899999999999987421 123467889999


Q ss_pred             EEEEeecCCCcee---ecccCCCccEEEEeeeccccceEE----EeCCCccEEEeccccccceeeccCCCCccEEEeeCC
Q 009796          212 DLSFFYCFGLKRL---RISEAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLP  284 (525)
Q Consensus       212 ~L~L~~c~~l~~l---~i~~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~  284 (525)
                      +|+|++|.. ..+   .+..+++|+.|++++|. .+..+.    ..+++|++|++++|.......+..+++|+.|+|++|
T Consensus       140 ~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          140 ELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN  217 (440)
T ss_dssp             EEECCSCCC-CEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred             eeeCCCCcc-cccCHHHhhhCcccCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC
Confidence            999998864 332   24567899999999876 444332    257899999999998222235788999999999999


Q ss_pred             CCChhhhhhhhcCCCCCcEEEecCccchh---HhhhcCcccceEccccccchhhh----cccCCCcceEEEecCCC
Q 009796          285 HFNDQEFHPLISKFPLLEDLSIISLETLE---RIMISSNRLMHLEVYNCSGLNRI----NVDAPNLVSFDFEDNPI  353 (525)
Q Consensus       285 ~~~~~~~~~ll~~~~~Le~L~L~~c~~l~---~~~~~~~~L~~L~l~~c~~L~~l----~~~~p~L~~l~~~g~~~  353 (525)
                      .+++. ....+.++++|+.|+|+++....   .....+++|+.|+++++. +..+    ....++|+.+.+.+++.
T Consensus       218 ~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          218 HLSAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             ccCcc-ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCCc
Confidence            88874 35567889999999999875311   112235789999998853 3222    23568999999998863

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.42  E-value=6.7e-14  Score=137.63  Aligned_cols=232  Identities=13%  Similarity=0.025  Sum_probs=154.9

Q ss_pred             CccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEee
Q 009796          162 LLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRF  239 (525)
Q Consensus       162 ~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~  239 (525)
                      +++.++++.+.+..  ......+++|++|+|++|.++.. ....+..+++|++|++++|.......+..+++|+.|++++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCS
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcC
Confidence            34455555555443  23345678999999999988532 3456789999999999999765555677889999999999


Q ss_pred             eccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhhc
Q 009796          240 TYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMIS  318 (525)
Q Consensus       240 c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~~  318 (525)
                      |.  +..+. ..++|++|+++++. ...  ....+++|+.|+++++.+++. ....+.++++|+.|+++++...      
T Consensus        90 n~--l~~l~-~~~~L~~L~l~~n~l~~~--~~~~~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~------  157 (317)
T 3o53_A           90 NY--VQELL-VGPSIETLHAANNNISRV--SCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEID------  157 (317)
T ss_dssp             SE--EEEEE-ECTTCCEEECCSSCCSEE--EECCCSSCEEEECCSSCCCSG-GGBCTGGGSSEEEEECTTSCCC------
T ss_pred             Cc--ccccc-CCCCcCEEECCCCccCCc--CccccCCCCEEECCCCCCCCc-cchhhhccCCCCEEECCCCCCC------
Confidence            85  44433 45899999999988 222  234578999999999998873 3335677889999999986421      


Q ss_pred             CcccceEccccccchhhhcccCCCcceEEEecCCCC--cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEE
Q 009796          319 SNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP--IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELH  396 (525)
Q Consensus       319 ~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~  396 (525)
                           .+..      ..+....++|+.|.++++.+.  .....+++|+.++++. +.+...     ...+..+++|+.|+
T Consensus       158 -----~~~~------~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~-N~l~~l-----~~~~~~l~~L~~L~  220 (317)
T 3o53_A          158 -----TVNF------AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS-NKLAFM-----GPEFQSAAGVTWIS  220 (317)
T ss_dssp             -----EEEG------GGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS-SCCCEE-----CGGGGGGTTCSEEE
T ss_pred             -----cccH------HHHhhccCcCCEEECCCCcCcccccccccccCCEEECCC-CcCCcc-----hhhhcccCcccEEE
Confidence                 1110      011112334444444444332  1112367888888874 333221     11256889999999


Q ss_pred             EEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796          397 LSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (525)
Q Consensus       397 L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~  432 (525)
                      ++.|....   +|      ..+..+++|++|.|.+|
T Consensus       221 L~~N~l~~---l~------~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          221 LRNNKLVL---IE------KALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             CTTSCCCE---EC------TTCCCCTTCCEEECTTC
T ss_pred             CcCCcccc---hh------hHhhcCCCCCEEEccCC
Confidence            99887663   55      24667899999999988

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.42  E-value=1.8e-13  Score=135.42  Aligned_cols=185  Identities=15%  Similarity=0.074  Sum_probs=122.7

Q ss_pred             cCCeEEEEEeecCCCCcccC-CccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796          134 NGVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L  210 (525)
                      .+++.|++..  +  ....+ |..+..+++|++|+|++|.+..  +..+.++++|++|+|++|.++.  ++.  ...++|
T Consensus        54 ~~l~~L~l~~--n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L  125 (332)
T 2ft3_A           54 PDTTLLDLQN--N--DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSL  125 (332)
T ss_dssp             TTCCEEECCS--S--CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTC
T ss_pred             CCCeEEECCC--C--cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccC
Confidence            4788888765  2  12233 4467789999999999998887  5678889999999999998742  221  123799


Q ss_pred             cEEEEeecCCCce--eecccCCCccEEEEeeec-cc--cceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCC
Q 009796          211 EDLSFFYCFGLKR--LRISEAHKLKSLILRFTY-QE--LESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLP  284 (525)
Q Consensus       211 e~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~-~~--l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~  284 (525)
                      ++|++++|.....  -.+.++++|+.|++++|. ..  .....+...+|++|+++++. ...+..+  .++|+.|+++++
T Consensus       126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n  203 (332)
T 2ft3_A          126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHN  203 (332)
T ss_dssp             CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSS
T ss_pred             CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccc--cCCCCEEECCCC
Confidence            9999998864322  225568899999999886 11  11112222288889988887 3333332  268889999888


Q ss_pred             CCChhhhhhhhcCCCCCcEEEecCccchhH---hhhcCcccceEcccc
Q 009796          285 HFNDQEFHPLISKFPLLEDLSIISLETLER---IMISSNRLMHLEVYN  329 (525)
Q Consensus       285 ~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~---~~~~~~~L~~L~l~~  329 (525)
                      .+++. ....+.++++|+.|+++++..-..   ....+++|+.|++++
T Consensus       204 ~i~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  250 (332)
T 2ft3_A          204 KIQAI-ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN  250 (332)
T ss_dssp             CCCCC-CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred             cCCcc-CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence            88763 234567788889888887642111   112234555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.41  E-value=9.5e-13  Score=135.85  Aligned_cols=267  Identities=15%  Similarity=0.092  Sum_probs=169.1

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~  212 (525)
                      .++++|++..  +.  ...+| .+..+++|++|++++|.+.. +..   .++|++|++++|.+..  ++ -+.++++|++
T Consensus       131 ~~L~~L~L~~--n~--l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~  199 (454)
T 1jl5_A          131 PLLEYLGVSN--NQ--LEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE--LP-ELQNLPFLTA  199 (454)
T ss_dssp             TTCCEEECCS--SC--CSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS--CC-CCTTCTTCCE
T ss_pred             CCCCEEECcC--CC--CCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCc--Cc-cccCCCCCCE
Confidence            4788888765  22  23477 58889999999999999886 332   4699999999998843  33 2688999999


Q ss_pred             EEEeecCCCceeecccCCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhh
Q 009796          213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE  290 (525)
Q Consensus       213 L~L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~  290 (525)
                      |++++|.... ++.. .++|+.|++++|. ..++. ...+++|++|+++++. ...+   ..+++|+.|+++++.+++  
T Consensus       200 L~l~~N~l~~-l~~~-~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~---~~~~~L~~L~l~~N~l~~--  271 (454)
T 1jl5_A          200 IYADNNSLKK-LPDL-PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLP---DLPPSLEALNVRDNYLTD--  271 (454)
T ss_dssp             EECCSSCCSS-CCCC-CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCC---SCCTTCCEEECCSSCCSC--
T ss_pred             EECCCCcCCc-CCCC-cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccc---ccccccCEEECCCCcccc--
Confidence            9999986432 2211 3689999999996 33332 2268999999999987 3222   234789999999998876  


Q ss_pred             hhhhhcCCCCCcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCCcccccCCCCceEEEEe
Q 009796          291 FHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSN  370 (525)
Q Consensus       291 ~~~ll~~~~~Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~L~~l~l~~  370 (525)
                      ++.   ..++|+.|+++++. ++.+....++|+.|+++++. +..+....++|+.|.++++.+......+++|+.+++++
T Consensus       272 l~~---~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~  346 (454)
T 1jl5_A          272 LPE---LPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASF  346 (454)
T ss_dssp             CCC---CCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSC-CSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             cCc---ccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCc-CCcccCCcCcCCEEECCCCccccccccCCcCCEEECCC
Confidence            232   34889999999875 33332234689999998753 33333223589999998876542111368899999974


Q ss_pred             eecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccC------CC-CCCCcccceEEEEEee
Q 009796          371 FGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCH------PS-LPLQVESLSLFMESFS  433 (525)
Q Consensus       371 ~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~------~~-~~~~~~L~~L~L~~~~  433 (525)
                       +.+..     ++.   .+++|++|+++.|.......+|..+...      .. ...+++|++|++.+|.
T Consensus       347 -N~l~~-----lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          347 -NHLAE-----VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             -SCCSC-----CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred             -Ccccc-----ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence             32221     111   4789999999988776521144221110      00 0012678888888773

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.41  E-value=2.3e-13  Score=132.97  Aligned_cols=240  Identities=16%  Similarity=0.073  Sum_probs=155.6

Q ss_pred             cEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce----eecccCCCccEEEEe
Q 009796          164 TSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR----LRISEAHKLKSLILR  238 (525)
Q Consensus       164 ~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~----l~i~~l~~L~~L~l~  238 (525)
                      +.++.+++.+.. |...  .++|++|+|++|.++. .....+.++++|++|++++|.....    ....++++|+.|+++
T Consensus        10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccCCCCC--CCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            577888877776 4322  4799999999998842 1223467899999999999864321    223357899999999


Q ss_pred             eec-cccceEEEeCCCccEEEecccc-ccce--eeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhH
Q 009796          239 FTY-QELESVEIAVPSLQQLELSFSR-VPRL--LDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLER  314 (525)
Q Consensus       239 ~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~--~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~  314 (525)
                      +|. ..+......+++|++|+++++. ...+  ..+..+++|+.|+++++.+++. ....+.++++|++|+++++.....
T Consensus        87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCcCCCEEECCCCccccc
Confidence            986 2233323468899999999987 2222  3678889999999998887653 445577888999999988643221


Q ss_pred             hhhcCcccceEccccccchhhhcccCCCcceEEEecCCCC----cccccCCCCceEEEEeeecCChhccccHHHHHHhcc
Q 009796          315 IMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFN  390 (525)
Q Consensus       315 ~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~  390 (525)
                      ...                 ......++|+.|.++++.+.    ..+..+++|+.+++++ +.+...    ....+..++
T Consensus       166 ~~~-----------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~----~~~~~~~l~  223 (306)
T 2z66_A          166 FLP-----------------DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH-NNFFSL----DTFPYKCLN  223 (306)
T ss_dssp             EEC-----------------SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCSBC----CSGGGTTCT
T ss_pred             cch-----------------hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC-CccCcc----ChhhccCcc
Confidence            000                 00112334444444444332    2344577888888864 222221    112246789


Q ss_pred             ccceEEEEEEeeeeeeeeccccccCCCCCCC-cccceEEEEEeeeccC
Q 009796          391 QIGELHLSLNYKQVLFNIDEFRSCHPSLPLQ-VESLSLFMESFSLYMD  437 (525)
Q Consensus       391 ~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~-~~L~~L~L~~~~~~~~  437 (525)
                      +|+.|+++.|.....  .|     . .+..+ .+|++|+|.+|....+
T Consensus       224 ~L~~L~L~~N~l~~~--~~-----~-~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          224 SLQVLDYSLNHIMTS--KK-----Q-ELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TCCEEECTTSCCCBC--SS-----S-SCCCCCTTCCEEECTTCCEECS
T ss_pred             cCCEeECCCCCCccc--CH-----H-HHHhhhccCCEEEccCCCeecc
Confidence            999999998876654  22     1 34455 4899999998865544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.39  E-value=9.1e-13  Score=127.33  Aligned_cols=199  Identities=16%  Similarity=0.103  Sum_probs=131.2

Q ss_pred             cccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee---
Q 009796          150 VNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL---  224 (525)
Q Consensus       150 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l---  224 (525)
                      ...+|..+  .++|++|++++|.+..  +..+..+++|++|+|++|.++.- ....+.++++|++|++++|..+..+   
T Consensus        23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~   99 (285)
T 1ozn_A           23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (285)
T ss_dssp             CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHH
Confidence            34556543  3689999999998887  45678899999999999987421 1334678899999999998755544   


Q ss_pred             ecccCCCccEEEEeeec-cccc-eEEEeCCCccEEEecccc-ccc-eeeccCCCCccEEEeeCCCCChhhhhhhhcCCCC
Q 009796          225 RISEAHKLKSLILRFTY-QELE-SVEIAVPSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPL  300 (525)
Q Consensus       225 ~i~~l~~L~~L~l~~c~-~~l~-~~~~~~~~L~~L~l~~~~-~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~  300 (525)
                      .+..+++|+.|++++|. ..+. .....+++|++|+++++. ... ...++.+++|+.|+++++.+++. ....+.++++
T Consensus       100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~  178 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHS  178 (285)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTT
T ss_pred             HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCccc
Confidence            34467889999998885 2221 112247888888888887 222 23477888888888888887752 3334677888


Q ss_pred             CcEEEecCccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCC----cccccCCCCceEEEEe
Q 009796          301 LEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP----IVSTNAPCPLNVLFSN  370 (525)
Q Consensus       301 Le~L~L~~c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~  370 (525)
                      |+.|+++++...           .+..       ......++|+.|.++++.+.    ..+..+++|+.++++.
T Consensus       179 L~~L~l~~n~l~-----------~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  234 (285)
T 1ozn_A          179 LDRLLLHQNRVA-----------HVHP-------HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (285)
T ss_dssp             CCEEECCSSCCC-----------EECT-------TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             cCEEECCCCccc-----------ccCH-------hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence            888888875421           1100       00012345555555555432    2244678888888874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.38  E-value=2.3e-12  Score=126.06  Aligned_cols=162  Identities=15%  Similarity=0.175  Sum_probs=88.3

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .++++|++..  +  ....+| .+..+++|++|+|++|.+.....+..+++|++|+|++|.+..-  . .+..+++|++|
T Consensus        41 ~~L~~L~l~~--~--~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L  112 (308)
T 1h6u_A           41 DGITTLSAFG--T--GVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTL  112 (308)
T ss_dssp             HTCCEEECTT--S--CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEE
T ss_pred             CCcCEEEeeC--C--CccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEE
Confidence            4777777654  1  222344 4566777888888887776622267777788888877776321  1 25667777777


Q ss_pred             EEeecCCCceeecccCCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhh
Q 009796          214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF  291 (525)
Q Consensus       214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~  291 (525)
                      ++++|.......+..+++|+.|++++|. ..+.. ...+++|++|++++|. ...+ .+..+++|+.|+++++.+++.  
T Consensus       113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~--  188 (308)
T 1h6u_A          113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDI--  188 (308)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC--
T ss_pred             ECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh-hhcCCCCCCEEECCCCccCcC--
Confidence            7777754222224455666666666654 11111 1134555555555554 1111 145555555555555555442  


Q ss_pred             hhhhcCCCCCcEEEecC
Q 009796          292 HPLISKFPLLEDLSIIS  308 (525)
Q Consensus       292 ~~ll~~~~~Le~L~L~~  308 (525)
                      .. +..+++|++|++++
T Consensus       189 ~~-l~~l~~L~~L~L~~  204 (308)
T 1h6u_A          189 SP-LASLPNLIEVHLKN  204 (308)
T ss_dssp             GG-GGGCTTCCEEECTT
T ss_pred             hh-hcCCCCCCEEEccC
Confidence            11 34445555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.38  E-value=5.1e-13  Score=129.12  Aligned_cols=171  Identities=16%  Similarity=0.097  Sum_probs=121.9

Q ss_pred             cCCeEEEEEeecCCCCcccCC-ccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceee-echHHHHHHHhCCcC
Q 009796          134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVY-VNDQMVQSLVRECRV  209 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~c~~  209 (525)
                      .++++|++..    .....++ ..+..+++|++|+|++|.+..  +..+.++++|++|++++|. +..- ....+..+++
T Consensus        32 ~~l~~L~l~~----n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~  106 (285)
T 1ozn_A           32 AASQRIFLHG----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGR  106 (285)
T ss_dssp             TTCSEEECTT----SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTT
T ss_pred             CCceEEEeeC----CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcC
Confidence            4788888754    1222344 456678899999999998876  5667889999999999986 4321 1334677899


Q ss_pred             ccEEEEeecCCCce--eecccCCCccEEEEeeec-cccceE-EEeCCCccEEEecccc-ccce-eeccCCCCccEEEeeC
Q 009796          210 LEDLSFFYCFGLKR--LRISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFL  283 (525)
Q Consensus       210 Le~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~-~~~~-~~~~~l~~L~~L~L~~  283 (525)
                      |++|++++|.....  -.+..+++|+.|++++|. ..+..- ...+++|++|+++++. ...+ ..+..+++|+.|++++
T Consensus       107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  186 (285)
T 1ozn_A          107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ  186 (285)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence            99999998864332  224567899999999885 222211 1257899999999987 3222 3478889999999999


Q ss_pred             CCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796          284 PHFNDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       284 ~~~~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      +.+++. ....+.++++|+.|+++++.
T Consensus       187 n~l~~~-~~~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          187 NRVAHV-HPHAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             SCCCEE-CTTTTTTCTTCCEEECCSSC
T ss_pred             Cccccc-CHhHccCcccccEeeCCCCc
Confidence            988774 34556788999999998864

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.38  E-value=1.4e-12  Score=127.46  Aligned_cols=185  Identities=17%  Similarity=0.218  Sum_probs=107.2

Q ss_pred             CCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEe
Q 009796          159 SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR  238 (525)
Q Consensus       159 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~  238 (525)
                      .+++|++|++++|.+...+.+..+++|++|+|++|.+.+-  .. +..+++|++|++++|..-..-.+..+++|+.|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCC--hh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence            3566777777777666533556677777777777766321  12 56677777777777653222234456677777777


Q ss_pred             eec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc--hhHh
Q 009796          239 FTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET--LERI  315 (525)
Q Consensus       239 ~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~--l~~~  315 (525)
                      +|. ..+.. ...+++|++|+++++.......++.+++|+.|+++++.+++-  .. +.++++|+.|+++++..  +.. 
T Consensus       116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~-  190 (308)
T 1h6u_A          116 STQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TP-LANLSKLTTLKADDNKISDISP-  190 (308)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred             CCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC--hh-hcCCCCCCEEECCCCccCcChh-
Confidence            765 22222 124667777777777611112266677777777777766652  22 56677777777776542  111 


Q ss_pred             hhcCcccceEcccccc--chhhhcccCCCcceEEEecCC
Q 009796          316 MISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNP  352 (525)
Q Consensus       316 ~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~  352 (525)
                      ...+++|++|+++++.  .+..+ ...++|+.|.++++.
T Consensus       191 l~~l~~L~~L~L~~N~l~~~~~l-~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          191 LASLPNLIEVHLKNNQISDVSPL-ANTSNLFIVTLTNQT  228 (308)
T ss_dssp             GGGCTTCCEEECTTSCCCBCGGG-TTCTTCCEEEEEEEE
T ss_pred             hcCCCCCCEEEccCCccCccccc-cCCCCCCEEEccCCe
Confidence            1234567777776643  22222 345677777776654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.37  E-value=1.1e-12  Score=136.64  Aligned_cols=207  Identities=20%  Similarity=0.189  Sum_probs=150.1

Q ss_pred             CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEE
Q 009796          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLS  214 (525)
Q Consensus       135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~  214 (525)
                      +++.|+++.  + ......|..+..+++|++|+|++|.+.....+..+++|++|+|++|.++.      +...++|++|+
T Consensus        35 ~L~~L~Ls~--n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~  105 (487)
T 3oja_A           35 NVKELDLSG--N-PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLH  105 (487)
T ss_dssp             GCCEEECCS--S-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEE
T ss_pred             CccEEEeeC--C-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEE
Confidence            789999876  2 22223345777899999999999998872238899999999999998843      12348999999


Q ss_pred             EeecCCCceeecccCCCccEEEEeeec-cccceEE-EeCCCccEEEecccc--ccceeecc-CCCCccEEEeeCCCCChh
Q 009796          215 FFYCFGLKRLRISEAHKLKSLILRFTY-QELESVE-IAVPSLQQLELSFSR--VPRLLDVA-ECPHLRKLVLFLPHFNDQ  289 (525)
Q Consensus       215 L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~-~~~~~L~~L~l~~~~--~~~~~~~~-~l~~L~~L~L~~~~~~~~  289 (525)
                      +++|.. ..+....+++|+.|++++|. ..+.... ..+++|+.|++++|.  ...+..+. .+++|+.|+|++|.+++.
T Consensus       106 L~~N~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          106 AANNNI-SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             CCSSCC-CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CcCCcC-CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            999864 33444557999999999997 3333333 358999999999998  32344454 789999999999999873


Q ss_pred             hhhhhhcCCCCCcEEEecCccc--hhHhhhcCcccceEcccccc--chhhhcccCCCcceEEEecCCCC
Q 009796          290 EFHPLISKFPLLEDLSIISLET--LERIMISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP  354 (525)
Q Consensus       290 ~~~~ll~~~~~Le~L~L~~c~~--l~~~~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g~~~~  354 (525)
                        .. ...+++|+.|+|+++..  +......+++|+.|+++++.  .+.......++|+.|.++++.+.
T Consensus       185 --~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          185 --KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             --EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             --cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence              22 34689999999998753  21122345789999998843  22222234588999999988754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.36  E-value=7.6e-13  Score=142.44  Aligned_cols=80  Identities=16%  Similarity=0.157  Sum_probs=45.4

Q ss_pred             CCeEEEEEeecCCCCcccCCcc-ccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796          135 GVKELDFEVITDKNSVNALPQT-IFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (525)
Q Consensus       135 ~l~~L~l~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le  211 (525)
                      ++++|+|+.    .....+|.. +.++++|++|+|++|.+..  +..++++++|++|+|++|.+....++..+..+++|+
T Consensus       101 ~L~~L~Ls~----N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  176 (635)
T 4g8a_A          101 HLSTLILTG----NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  176 (635)
T ss_dssp             TCCEEECTT----CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             CCCEEEccC----CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence            566666643    122344433 3456677777777766665  234566677777777766653322334455666666


Q ss_pred             EEEEeec
Q 009796          212 DLSFFYC  218 (525)
Q Consensus       212 ~L~L~~c  218 (525)
                      +|++++|
T Consensus       177 ~L~L~~N  183 (635)
T 4g8a_A          177 HLDLSSN  183 (635)
T ss_dssp             EEECCSS
T ss_pred             hhcccCc
Confidence            6666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.35  E-value=4.1e-13  Score=135.74  Aligned_cols=91  Identities=13%  Similarity=0.175  Sum_probs=55.6

Q ss_pred             ccCCccccCCCCccEEEecCCcCCC------CCCCCCCCcccEEEeceeeec---h---HH---HHHHHhCCcCccEEEE
Q 009796          151 NALPQTIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYVN---D---QM---VQSLVRECRVLEDLSF  215 (525)
Q Consensus       151 ~~lp~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~---~---~~---l~~ll~~c~~Le~L~L  215 (525)
                      ..++..+..+++|++|+|++|.+..      ...+..+++|++|+|++|.++   +   ..   +...+..+++|++|+|
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            3455666677788888888887664      123556788888888776431   1   11   2233567788888888


Q ss_pred             eecCCCc----ee--ecccCCCccEEEEeeec
Q 009796          216 FYCFGLK----RL--RISEAHKLKSLILRFTY  241 (525)
Q Consensus       216 ~~c~~l~----~l--~i~~l~~L~~L~l~~c~  241 (525)
                      ++|....    .+  .+..+++|+.|++++|.
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            7775432    11  12345667777766664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.34  E-value=7.3e-13  Score=133.90  Aligned_cols=175  Identities=17%  Similarity=0.149  Sum_probs=97.9

Q ss_pred             cCCeEEEEEeecCCC---CcccCCccccCCCCccEEEecCCcCCC-----CCC-------CCCCCcccEEEeceeeechH
Q 009796          134 NGVKELDFEVITDKN---SVNALPQTIFSAKLLTSLKLFGCKLEQ-----PSH-------CANLQSLKKLSLDEVYVNDQ  198 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~---~~~~lp~~l~~~~~L~~L~L~~~~l~~-----~~~-------~~~l~~L~~L~L~~~~~~~~  198 (525)
                      .++++|++..  +..   ....++..+..+++|++|+|++|.+..     |..       +..+++|++|+|++|.+++.
T Consensus        32 ~~L~~L~L~~--n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           32 DSVKEIVLSG--NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             SCCCEEECTT--SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             CCccEEECCC--CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            4788888764  111   111234446678899999998875442     122       25788999999999988443


Q ss_pred             ---HHHHHHhCCcCccEEEEeecCCCce----ee--cccC---------CCccEEEEeeec-c--ccceE---EEeCCCc
Q 009796          199 ---MVQSLVRECRVLEDLSFFYCFGLKR----LR--ISEA---------HKLKSLILRFTY-Q--ELESV---EIAVPSL  254 (525)
Q Consensus       199 ---~l~~ll~~c~~Le~L~L~~c~~l~~----l~--i~~l---------~~L~~L~l~~c~-~--~l~~~---~~~~~~L  254 (525)
                         .+...+..+++|++|+|++|.....    +.  +..+         ++|+.|++++|. .  .+..+   ...+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               3556678899999999988864211    10  1122         566666666664 1  11111   1134555


Q ss_pred             cEEEecccccc-------ceeeccCCCCccEEEeeCCCCChh---hhhhhhcCCCCCcEEEecCcc
Q 009796          255 QQLELSFSRVP-------RLLDVAECPHLRKLVLFLPHFNDQ---EFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       255 ~~L~l~~~~~~-------~~~~~~~l~~L~~L~L~~~~~~~~---~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      ++|++++|...       .+..+..+++|+.|+|++|.+++.   .+...+..+++|++|+|++|.
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            55555555411       111444555555555555555431   123334555555555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.33  E-value=9e-13  Score=126.52  Aligned_cols=171  Identities=16%  Similarity=0.124  Sum_probs=122.8

Q ss_pred             HcCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796          133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (525)
Q Consensus       133 ~~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~  212 (525)
                      ..++++|++..  +  ....+ ..+..+++|++|++++|.+...+.+..+++|++|+|++|.++.- ....+.++++|++
T Consensus        40 l~~L~~L~l~~--~--~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  113 (272)
T 3rfs_A           40 LNSIDQIIANN--S--DIKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKE  113 (272)
T ss_dssp             HTTCCEEECTT--S--CCCCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred             ccceeeeeeCC--C--Ccccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCE
Confidence            46788888754  1  12223 34677899999999999888766778899999999999987421 2334678899999


Q ss_pred             EEEeecCCCceee--cccCCCccEEEEeeec-cccceEE-EeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCC
Q 009796          213 LSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELESVE-IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHF  286 (525)
Q Consensus       213 L~L~~c~~l~~l~--i~~l~~L~~L~l~~c~-~~l~~~~-~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~  286 (525)
                      |++++|.......  +.++++|+.|++++|. ..+..-. ..+++|+.|++++|.  ...+..++.+++|+.|++++|.+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            9999886432222  4567899999999885 2222111 257889999999887  22233467888999999998888


Q ss_pred             ChhhhhhhhcCCCCCcEEEecCcc
Q 009796          287 NDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       287 ~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      ++. ....+.++++|+.|+++++.
T Consensus       194 ~~~-~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          194 KSV-PDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             SCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             Ccc-CHHHHhCCcCCCEEEccCCC
Confidence            763 34556788899999998864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.32  E-value=1.8e-13  Score=134.24  Aligned_cols=237  Identities=16%  Similarity=0.059  Sum_probs=139.1

Q ss_pred             CCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHH-------hCCcCccEEEEeecCCCceee--c--cc
Q 009796          160 AKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLV-------RECRVLEDLSFFYCFGLKRLR--I--SE  228 (525)
Q Consensus       160 ~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll-------~~c~~Le~L~L~~c~~l~~l~--i--~~  228 (525)
                      .++|+.|++++|.+..|.....  .|+.|+|+++.+....+...+       .++++|++|++++|......+  +  ..
T Consensus        42 ~~~L~~l~l~~n~l~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           42 GRSLEYLLKRVDTEADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             EEECTTHHHHCCTTCCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CCCceeEeecccccccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            4678888888887722333322  288888888877322222222       268899999999987543222  2  56


Q ss_pred             CCCccEEEEeeec-cccceEEEe-----CCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhh-hh-hh-hcC
Q 009796          229 AHKLKSLILRFTY-QELESVEIA-----VPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQE-FH-PL-ISK  297 (525)
Q Consensus       229 l~~L~~L~l~~c~-~~l~~~~~~-----~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~-~l-l~~  297 (525)
                      +++|+.|++++|. .........     .++|++|+++++.  ...+..++.+++|+.|++++|.+.+.. .. .+ +.+
T Consensus       120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            7899999999886 222211112     2889999999888  333357888999999999998877641 22 22 378


Q ss_pred             CCCCcEEEecCccch--hHhh----hcCcccceEccccccchhhhcccCCCcceEEEecCCCC-cccccCCCCceEEEEe
Q 009796          298 FPLLEDLSIISLETL--ERIM----ISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP-IVSTNAPCPLNVLFSN  370 (525)
Q Consensus       298 ~~~Le~L~L~~c~~l--~~~~----~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~  370 (525)
                      +++|++|+++++..-  ..+.    ...++|+.|+++++. +...                .+ .....+++|+.++++.
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~----------------~~~~~~~~l~~L~~L~Ls~  262 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDA----------------AGAPSCDWPSQLNSLNLSF  262 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSS----------------CCCSCCCCCTTCCEEECTT
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcc----------------cchhhhhhcCCCCEEECCC
Confidence            889999999886421  1111    122455555555432 1110                00 1112355666666653


Q ss_pred             eecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009796          371 FGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS  433 (525)
Q Consensus       371 ~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~~  433 (525)
                       +.+..     ++..+.  ++|+.|+++.|....   +|       .+..+++|++|.|.+|.
T Consensus       263 -N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~---~p-------~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          263 -TGLKQ-----VPKGLP--AKLSVLDLSYNRLDR---NP-------SPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             -SCCSS-----CCSSCC--SEEEEEECCSSCCCS---CC-------CTTTSCEEEEEECTTCT
T ss_pred             -CccCh-----hhhhcc--CCceEEECCCCCCCC---Ch-------hHhhCCCCCEEeccCCC
Confidence             22221     111011  677777777665543   22       34556777777777663

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.30  E-value=5.2e-12  Score=118.67  Aligned_cols=154  Identities=14%  Similarity=0.088  Sum_probs=99.1

Q ss_pred             cccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceee-echHHHHHHHhCCcCccEEEEeecCCCceee-
Q 009796          150 VNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVY-VNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-  225 (525)
Q Consensus       150 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~-  225 (525)
                      ...+|. +  .++|++|++++|.+..  +..+.++++|++|++++|. ++.- ....+.++++|++|++++|..+..+. 
T Consensus        23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            344555 2  2378999999998877  3467789999999999886 5221 11235778899999998855555544 


Q ss_pred             --cccCCCccEEEEeeec-cccceEEEeCCCcc---EEEeccc-c-ccc-eeeccCCCCcc-EEEeeCCCCChhhhhhhh
Q 009796          226 --ISEAHKLKSLILRFTY-QELESVEIAVPSLQ---QLELSFS-R-VPR-LLDVAECPHLR-KLVLFLPHFNDQEFHPLI  295 (525)
Q Consensus       226 --i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~---~L~l~~~-~-~~~-~~~~~~l~~L~-~L~L~~~~~~~~~~~~ll  295 (525)
                        +.++++|+.|++++|. ..++. ...+++|+   +|+++++ . ... +..+..+++|+ .|+++++.++.- ....+
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-~~~~~  176 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-QGYAF  176 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-CTTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-CHhhc
Confidence              3357888888888885 33332 12455665   7777777 4 222 22466777777 777777777631 22233


Q ss_pred             cCCCCCcEEEecCcc
Q 009796          296 SKFPLLEDLSIISLE  310 (525)
Q Consensus       296 ~~~~~Le~L~L~~c~  310 (525)
                      .. ++|+.|+++++.
T Consensus       177 ~~-~~L~~L~L~~n~  190 (239)
T 2xwt_C          177 NG-TKLDAVYLNKNK  190 (239)
T ss_dssp             TT-CEEEEEECTTCT
T ss_pred             CC-CCCCEEEcCCCC
Confidence            33 677777777653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.30  E-value=2.2e-12  Score=123.75  Aligned_cols=168  Identities=14%  Similarity=0.076  Sum_probs=120.0

Q ss_pred             cCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--cccCCCccEE
Q 009796          158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSL  235 (525)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~--i~~l~~L~~L  235 (525)
                      ..+++|+.|.+++|.+.....+..+++|++|+|++|.+.+  +. .+..+++|++|++++|.......  +..+++|+.|
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            4578999999999998876678889999999999999843  22 46789999999999986432221  4567899999


Q ss_pred             EEeeec-cccceE-EEeCCCccEEEecccc-c-cceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc
Q 009796          236 ILRFTY-QELESV-EIAVPSLQQLELSFSR-V-PRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET  311 (525)
Q Consensus       236 ~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~-~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~  311 (525)
                      ++++|. ..+..- ...+++|++|++++|. . ..+..++.+++|+.|+++++.+++. ....+.++++|+.|+++++..
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCcC
Confidence            999886 222211 1257889999999887 2 2233467889999999999888753 345567888999999988642


Q ss_pred             hhH---hhhcCcccceEcccc
Q 009796          312 LER---IMISSNRLMHLEVYN  329 (525)
Q Consensus       312 l~~---~~~~~~~L~~L~l~~  329 (525)
                      ...   ....+++|+.|++.+
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCS
T ss_pred             CccCHHHHhCCcCCCEEEccC
Confidence            111   111234555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.29  E-value=5.2e-12  Score=121.37  Aligned_cols=137  Identities=15%  Similarity=0.081  Sum_probs=93.7

Q ss_pred             CcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee--
Q 009796          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--  224 (525)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l--  224 (525)
                      ....+|..+.  ++|++|++++|.+..  +..+.++++|++|+|++|.+..- ....+.++++|++|++++|......  
T Consensus        18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (276)
T 2z62_A           18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALG   94 (276)
T ss_dssp             CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChh
Confidence            3455666543  579999999998887  34778899999999999987321 1234677899999999888642221  


Q ss_pred             ecccCCCccEEEEeeec-cccceEEE-eCCCccEEEecccc-c--cceeeccCCCCccEEEeeCCCCCh
Q 009796          225 RISEAHKLKSLILRFTY-QELESVEI-AVPSLQQLELSFSR-V--PRLLDVAECPHLRKLVLFLPHFND  288 (525)
Q Consensus       225 ~i~~l~~L~~L~l~~c~-~~l~~~~~-~~~~L~~L~l~~~~-~--~~~~~~~~l~~L~~L~L~~~~~~~  288 (525)
                      .+.++++|+.|++.+|. ..+....+ .+++|++|+++++. .  ..+..++.+++|+.|+++++.+++
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence            24467788888887775 22222222 46777777777776 2  235567777777777777777765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.29  E-value=1.3e-12  Score=128.04  Aligned_cols=149  Identities=20%  Similarity=0.106  Sum_probs=81.8

Q ss_pred             CCCCccEEEecCCcCCC--CCCC--CCCCcccEEEeceeeechHHHHHHHhC-----CcCccEEEEeecCCCcee--ecc
Q 009796          159 SAKLLTSLKLFGCKLEQ--PSHC--ANLQSLKKLSLDEVYVNDQMVQSLVRE-----CRVLEDLSFFYCFGLKRL--RIS  227 (525)
Q Consensus       159 ~~~~L~~L~L~~~~l~~--~~~~--~~l~~L~~L~L~~~~~~~~~l~~ll~~-----c~~Le~L~L~~c~~l~~l--~i~  227 (525)
                      .+++|++|+|++|.+.+  +..+  ..+++|++|+|++|.++..  +..+..     +++|++|++++|......  .+.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence            57788888888888775  4443  7788888888888887432  122222     278888888877542211  234


Q ss_pred             cCCCccEEEEeeec-cc----cceEE-EeCCCccEEEecccc-cc---ce-eeccCCCCccEEEeeCCCCChhhhhhhhc
Q 009796          228 EAHKLKSLILRFTY-QE----LESVE-IAVPSLQQLELSFSR-VP---RL-LDVAECPHLRKLVLFLPHFNDQEFHPLIS  296 (525)
Q Consensus       228 ~l~~L~~L~l~~c~-~~----l~~~~-~~~~~L~~L~l~~~~-~~---~~-~~~~~l~~L~~L~L~~~~~~~~~~~~ll~  296 (525)
                      .+++|+.|++++|. .+    ...+. ..+++|++|++++|. ..   .+ ..+..+++|+.|++++|.+++......+.
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence            55666666666664 11    00111 234555555555555 11   11 11234455555665555555432112233


Q ss_pred             CCCCCcEEEecCc
Q 009796          297 KFPLLEDLSIISL  309 (525)
Q Consensus       297 ~~~~Le~L~L~~c  309 (525)
                      .+++|+.|+++++
T Consensus       251 ~l~~L~~L~Ls~N  263 (312)
T 1wwl_A          251 WPSQLNSLNLSFT  263 (312)
T ss_dssp             CCTTCCEEECTTS
T ss_pred             hcCCCCEEECCCC
Confidence            4455555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.29  E-value=5.3e-12  Score=120.95  Aligned_cols=154  Identities=19%  Similarity=0.162  Sum_probs=92.3

Q ss_pred             ccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee---
Q 009796          151 NALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---  225 (525)
Q Consensus       151 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~---  225 (525)
                      ..+|..+.  ++|++|+|++|.+..  +..+.++++|++|+|++|.++. .....+..+++|++|++++|.. ..+.   
T Consensus        29 ~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~  104 (270)
T 2o6q_A           29 TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL-QALPIGV  104 (270)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCC-CCCCTTT
T ss_pred             CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcC-CcCCHhH
Confidence            34554443  567888888887766  3356778888888888777632 1123346677888888877753 2222   


Q ss_pred             cccCCCccEEEEeeec-cccceE-EEeCCCccEEEecccc-ccce-eeccCCCCccEEEeeCCCCChhhhhhhhcCCCCC
Q 009796          226 ISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLL  301 (525)
Q Consensus       226 i~~l~~L~~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~-~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~L  301 (525)
                      +.++++|+.|++++|. ..+..- ...+++|++|+++++. ...+ ..++.+++|+.|+++++.++.. ....+.++++|
T Consensus       105 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L  183 (270)
T 2o6q_A          105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKLTEL  183 (270)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTC
T ss_pred             cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe-ChhHhccCCCc
Confidence            3356777777777764 111111 1245677777777766 2222 2356677777777777766552 22335566777


Q ss_pred             cEEEecCc
Q 009796          302 EDLSIISL  309 (525)
Q Consensus       302 e~L~L~~c  309 (525)
                      ++|+|+++
T Consensus       184 ~~L~L~~N  191 (270)
T 2o6q_A          184 KTLKLDNN  191 (270)
T ss_dssp             CEEECCSS
T ss_pred             CEEECCCC
Confidence            77777664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.28  E-value=1.3e-11  Score=119.55  Aligned_cols=149  Identities=19%  Similarity=0.121  Sum_probs=92.8

Q ss_pred             ccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEE
Q 009796          157 IFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL  235 (525)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L  235 (525)
                      +..+++++.++++++.+.. |..+  .++|+.|+|++|.++.- ....+..+++|++|++++|..........+++|+.|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL   82 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence            3456677777777777765 3333  36777888877776321 123456677778887777653222222456777777


Q ss_pred             EEeeec-cccceEEEeCCCccEEEecccc-cc-ceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCc
Q 009796          236 ILRFTY-QELESVEIAVPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL  309 (525)
Q Consensus       236 ~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c  309 (525)
                      ++++|. ..+......+++|++|+++++. .. .+..++.+++|+.|+++++.++.. ....+..+++|+.|+|+++
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTS
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCC
Confidence            777775 2222222346777777777777 22 234577778888888887777652 3445567777888877764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.27  E-value=2.7e-12  Score=125.66  Aligned_cols=180  Identities=21%  Similarity=0.134  Sum_probs=109.9

Q ss_pred             hhHHHHHHHHHHcCCeEEEEEeecCCCCcccCCccc--cCCCCccEEEecCCcCCC--C----CCCCCCCcccEEEecee
Q 009796          122 PLFDKWVELAMENGVKELDFEVITDKNSVNALPQTI--FSAKLLTSLKLFGCKLEQ--P----SHCANLQSLKKLSLDEV  193 (525)
Q Consensus       122 ~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~L~~~  193 (525)
                      ..+..........++++|++..  + ......|..+  ..+++|++|+|++|.+..  +    .....+++|++|+|++|
T Consensus        79 ~~~~~~~~~~~~~~L~~L~l~~--n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n  155 (310)
T 4glp_A           79 QLLVGALRVLAYSRLKELTLED--L-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA  155 (310)
T ss_dssp             HHHHHHHHHHHHSCCCEEEEES--C-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred             HHHHHHHHhcccCceeEEEeeC--C-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence            4455555555556788888875  2 2233455555  667888888888887765  1    22246788888888888


Q ss_pred             eechHHHHHHHhCCcCccEEEEeecCCCce------eecccCCCccEEEEeeec-cccceE----EEeCCCccEEEeccc
Q 009796          194 YVNDQMVQSLVRECRVLEDLSFFYCFGLKR------LRISEAHKLKSLILRFTY-QELESV----EIAVPSLQQLELSFS  262 (525)
Q Consensus       194 ~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~------l~i~~l~~L~~L~l~~c~-~~l~~~----~~~~~~L~~L~l~~~  262 (525)
                      .+... ....++++++|++|+|++|.....      ..+..+++|+.|++++|. ..+...    ...+++|++|++++|
T Consensus       156 ~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          156 HSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN  234 (310)
T ss_dssp             SSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred             Ccchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence            77321 223456778888888888864321      122356778888887775 222221    124577777777777


Q ss_pred             c--ccceeeccCC---CCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCc
Q 009796          263 R--VPRLLDVAEC---PHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL  309 (525)
Q Consensus       263 ~--~~~~~~~~~l---~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c  309 (525)
                      .  ...+..++.+   ++|+.|++++|.++.  ++..+  +++|+.|+|+++
T Consensus       235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~--~~~L~~L~Ls~N  282 (310)
T 4glp_A          235 SLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGL--PAKLRVLDLSSN  282 (310)
T ss_dssp             CCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCC--CSCCSCEECCSC
T ss_pred             CCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhhh--cCCCCEEECCCC
Confidence            7  2223344444   577777777777763  23222  257777777764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.27  E-value=8.4e-12  Score=119.55  Aligned_cols=171  Identities=18%  Similarity=0.131  Sum_probs=127.4

Q ss_pred             cCCeEEEEEeecCCCCcccCCc-cccCCCCccEEEecCCcCCC-C-CCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796          134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L  210 (525)
                      .++++|++..  +  ....++. .+..+++|++|+|++|.+.. + ..+..+++|++|+|++|.+..- ....+..+++|
T Consensus        37 ~~l~~L~l~~--n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L  111 (270)
T 2o6q_A           37 ADTKKLDLQS--N--KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNL  111 (270)
T ss_dssp             TTCSEEECCS--S--CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSC
T ss_pred             CCCCEEECcC--C--CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCC
Confidence            4688888865  2  2334444 56789999999999999887 3 3457899999999999988421 12446789999


Q ss_pred             cEEEEeecCCCce--eecccCCCccEEEEeeec-cccceE-EEeCCCccEEEecccc-cc-ceeeccCCCCccEEEeeCC
Q 009796          211 EDLSFFYCFGLKR--LRISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLP  284 (525)
Q Consensus       211 e~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~-~~-~~~~~~~l~~L~~L~L~~~  284 (525)
                      ++|++++|.....  -.+..+++|+.|++++|. ..+..- ...+++|++|+++++. .. .+..+..+++|+.|+++++
T Consensus       112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence            9999999864222  224568999999999996 222221 1257999999999998 32 2335788999999999999


Q ss_pred             CCChhhhhhhhcCCCCCcEEEecCcc
Q 009796          285 HFNDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       285 ~~~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      .++.. ....+..+++|+.|+|++++
T Consensus       192 ~l~~~-~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          192 QLKRV-PEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             cCCcC-CHHHhccccCCCEEEecCCC
Confidence            98863 34557789999999998854

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.26  E-value=6.3e-12  Score=118.07  Aligned_cols=190  Identities=11%  Similarity=-0.000  Sum_probs=127.5

Q ss_pred             cCCeEEEEEeecCCCCcccCCc-cccCCCCccEEEecCCc-CCC--CCCCCCCCcccEEEece-eeechHHHHHHHhCCc
Q 009796          134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCK-LEQ--PSHCANLQSLKKLSLDE-VYVNDQMVQSLVRECR  208 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~-l~~--~~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~c~  208 (525)
                      .++++|++..  +  ....+|. .+..+++|++|++++|. +..  +..+.++++|++|++++ |.+..- ....+.+++
T Consensus        31 ~~l~~L~l~~--n--~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~  105 (239)
T 2xwt_C           31 PSTQTLKLIE--T--HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELP  105 (239)
T ss_dssp             TTCCEEEEES--C--CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCT
T ss_pred             CcccEEEEeC--C--cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCC
Confidence            3788888876  2  2334554 55678999999999997 766  34678899999999998 766321 123467899


Q ss_pred             CccEEEEeecCCCceeecccCCCcc---EEEEeeeccccceEE----EeCCCcc-EEEecccc-ccceeeccCCCCccEE
Q 009796          209 VLEDLSFFYCFGLKRLRISEAHKLK---SLILRFTYQELESVE----IAVPSLQ-QLELSFSR-VPRLLDVAECPHLRKL  279 (525)
Q Consensus       209 ~Le~L~L~~c~~l~~l~i~~l~~L~---~L~l~~c~~~l~~~~----~~~~~L~-~L~l~~~~-~~~~~~~~~l~~L~~L  279 (525)
                      +|++|++++|....--.+..+++|+   .|++++|. .+..+.    ..+++|+ +|+++++. ...+......++|+.|
T Consensus       106 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~-~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L  184 (239)
T 2xwt_C          106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP-YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAV  184 (239)
T ss_dssp             TCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCT-TCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEE
T ss_pred             CCCEEeCCCCCCccccccccccccccccEEECCCCc-chhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEE
Confidence            9999999998643211244567777   99999983 233332    2578999 99999887 3333332233789999


Q ss_pred             EeeCCC-CChhhhhhhhcCC-CCCcEEEecCccchhHhhh-cCcccceEcccccc
Q 009796          280 VLFLPH-FNDQEFHPLISKF-PLLEDLSIISLETLERIMI-SSNRLMHLEVYNCS  331 (525)
Q Consensus       280 ~L~~~~-~~~~~~~~ll~~~-~~Le~L~L~~c~~l~~~~~-~~~~L~~L~l~~c~  331 (525)
                      +++++. ++.. ....+.++ ++|+.|+++++. ++.+.. .+++|+.|.+.++.
T Consensus       185 ~L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          185 YLNKNKYLTVI-DKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTW  237 (239)
T ss_dssp             ECTTCTTCCEE-CTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC-
T ss_pred             EcCCCCCcccC-CHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCcc
Confidence            999994 7752 34557778 899999999854 222211 34566666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.25  E-value=4.2e-12  Score=122.07  Aligned_cols=170  Identities=21%  Similarity=0.194  Sum_probs=116.1

Q ss_pred             cCCeEEEEEeecCCCCcccCCc-cccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796          134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L  210 (525)
                      .++++|+++.    .....++. .+..+++|++|++++|.+..  +..+.++++|++|+|++|.+... ....+.++++|
T Consensus        28 ~~l~~L~ls~----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSF----NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTT----CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTC
T ss_pred             CCccEEECCC----CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccc
Confidence            3688888754    12233333 56678899999999998876  44678899999999999987322 12346788999


Q ss_pred             cEEEEeecCCC--ceeecccCCCccEEEEeeec-cc--cceEEEeCCCccEEEecccc--ccceeeccCCCCcc----EE
Q 009796          211 EDLSFFYCFGL--KRLRISEAHKLKSLILRFTY-QE--LESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLR----KL  279 (525)
Q Consensus       211 e~L~L~~c~~l--~~l~i~~l~~L~~L~l~~c~-~~--l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~----~L  279 (525)
                      ++|++++|...  ....+..+++|+.|++++|. ..  +......+++|++|+++++.  ...+..+..+++|+    .|
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L  182 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence            99999888542  23346678899999999886 22  22222357899999999987  22223455555555    78


Q ss_pred             EeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796          280 VLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       280 ~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      +++++.+++.  ........+|+.|+++++.
T Consensus       183 ~ls~n~l~~~--~~~~~~~~~L~~L~L~~n~  211 (276)
T 2z62_A          183 DLSLNPMNFI--QPGAFKEIRLKELALDTNQ  211 (276)
T ss_dssp             ECCSSCCCEE--CTTSSCSCCEEEEECCSSC
T ss_pred             ecCCCccccc--CccccCCCcccEEECCCCc
Confidence            8888888763  2222334478888888764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.23  E-value=2.2e-11  Score=118.00  Aligned_cols=164  Identities=24%  Similarity=0.237  Sum_probs=120.5

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .+++.|++..  +  ....++ .+..+++|++|++++|.+.....+..+++|++|+|++|.++.  ++. +..+++|++|
T Consensus        46 ~~L~~L~l~~--~--~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           46 NSIDQIIANN--S--DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSL  117 (291)
T ss_dssp             HTCCEEECTT--S--CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEE
T ss_pred             CcccEEEccC--C--CcccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEE
Confidence            5788888764  2  223343 367789999999999998883338889999999999998843  222 7889999999


Q ss_pred             EEeecCCCceeecccCCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhh
Q 009796          214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF  291 (525)
Q Consensus       214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~  291 (525)
                      ++++|.....-.+..+++|+.|++++|. ..+. ....+++|+.|++++|. ...+ .+..+++|+.|++++|.+++  +
T Consensus       118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~L~~N~i~~--l  193 (291)
T 1h6t_A          118 SLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD--L  193 (291)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCB--C
T ss_pred             ECCCCcCCCChhhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEccCCccccch-hhcCCCccCEEECCCCcCCC--C
Confidence            9999864332335567899999999886 2221 12257889999998888 2222 28888899999998888876  3


Q ss_pred             hhhhcCCCCCcEEEecCcc
Q 009796          292 HPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       292 ~~ll~~~~~Le~L~L~~c~  310 (525)
                      .. +..+++|+.|+++++.
T Consensus       194 ~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          194 RA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             GG-GTTCTTCSEEEEEEEE
T ss_pred             hh-hccCCCCCEEECcCCc
Confidence            33 6788888888888754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.22  E-value=2.5e-11  Score=117.63  Aligned_cols=146  Identities=16%  Similarity=0.164  Sum_probs=112.9

Q ss_pred             cCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEE
Q 009796          158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL  237 (525)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l  237 (525)
                      ..+++|+.|++++|.+...+.+..+++|++|+|++|.+++-  .. +..+++|++|++++|.....-.+..+++|+.|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L  119 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL  119 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred             hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence            35789999999999988755678899999999999998432  22 7899999999999986533233667899999999


Q ss_pred             eeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796          238 RFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       238 ~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      ++|. ..+.. ...+++|+.|++++|.......++.+++|+.|++++|.+++.  .. +..+++|+.|+++++.
T Consensus       120 ~~n~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          120 EHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             TTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC
T ss_pred             CCCcCCCChh-hcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccc--hh-hcCCCccCEEECCCCc
Confidence            9886 22221 125788999999988822225678889999999999988873  22 7788999999998864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.22  E-value=8e-12  Score=125.09  Aligned_cols=157  Identities=15%  Similarity=0.097  Sum_probs=89.8

Q ss_pred             CccccCCCCccEEEecCCcCCC-C-----CCCCCCC-cccEEEeceeeech---HHHHHHHhCC-cCccEEEEeecCCCc
Q 009796          154 PQTIFSAKLLTSLKLFGCKLEQ-P-----SHCANLQ-SLKKLSLDEVYVND---QMVQSLVREC-RVLEDLSFFYCFGLK  222 (525)
Q Consensus       154 p~~l~~~~~L~~L~L~~~~l~~-~-----~~~~~l~-~L~~L~L~~~~~~~---~~l~~ll~~c-~~Le~L~L~~c~~l~  222 (525)
                      |..+...++|++|+|++|.+.. +     ..+..++ +|++|+|++|.+++   ..+..++..+ ++|++|+|++|....
T Consensus        15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~   94 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY   94 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence            3333344568888888887765 2     3445677 78888888887743   3344444444 888888888876321


Q ss_pred             eee------cccC-CCccEEEEeeec-cccce--EE--E-e-CCCccEEEecccc-c-----cceeeccCCC-CccEEEe
Q 009796          223 RLR------ISEA-HKLKSLILRFTY-QELES--VE--I-A-VPSLQQLELSFSR-V-----PRLLDVAECP-HLRKLVL  281 (525)
Q Consensus       223 ~l~------i~~l-~~L~~L~l~~c~-~~l~~--~~--~-~-~~~L~~L~l~~~~-~-----~~~~~~~~l~-~L~~L~L  281 (525)
                      ...      +..+ ++|+.|++++|. .....  +.  + . .++|++|++++|. .     .....+..++ +|+.|+|
T Consensus        95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L  174 (362)
T 3goz_A           95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL  174 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence            110      2233 677777777775 11111  10  0 1 2477777777766 1     1112233444 6777777


Q ss_pred             eCCCCChhh---hhhhhcCC-CCCcEEEecCcc
Q 009796          282 FLPHFNDQE---FHPLISKF-PLLEDLSIISLE  310 (525)
Q Consensus       282 ~~~~~~~~~---~~~ll~~~-~~Le~L~L~~c~  310 (525)
                      ++|.+++..   +...+..+ ++|++|+|+++.
T Consensus       175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  207 (362)
T 3goz_A          175 RGNNLASKNCAELAKFLASIPASVTSLDLSANL  207 (362)
T ss_dssp             TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence            777665532   23344455 377777777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.21  E-value=2.3e-11  Score=117.83  Aligned_cols=165  Identities=21%  Similarity=0.105  Sum_probs=121.4

Q ss_pred             CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (525)
Q Consensus       135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~  212 (525)
                      +++++++..    .....+|..+.  ++++.|+|++|.+..  +..+..+++|++|+|++|.++.-  .. ...+++|++
T Consensus        11 ~l~~l~~~~----~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~   81 (290)
T 1p9a_G           11 SHLEVNCDK----RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QV-DGTLPVLGT   81 (290)
T ss_dssp             TCCEEECTT----SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--EC-CSCCTTCCE
T ss_pred             CccEEECCC----CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc--cC-CCCCCcCCE
Confidence            466666543    23446676654  689999999999887  56788899999999999988321  11 268899999


Q ss_pred             EEEeecCCCceee--cccCCCccEEEEeeec-cccceE-EEeCCCccEEEecccc-c-cceeeccCCCCccEEEeeCCCC
Q 009796          213 LSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-V-PRLLDVAECPHLRKLVLFLPHF  286 (525)
Q Consensus       213 L~L~~c~~l~~l~--i~~l~~L~~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~-~-~~~~~~~~l~~L~~L~L~~~~~  286 (525)
                      |++++|... .++  +.++++|+.|++++|. ..+..- ...+++|++|+++++. . ..+..+..+++|+.|+|++|.+
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            999998642 222  3467899999999986 222211 2257899999999998 2 2334467899999999999998


Q ss_pred             ChhhhhhhhcCCCCCcEEEecCcc
Q 009796          287 NDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       287 ~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      +.- ....+.++++|+.|+|+++.
T Consensus       161 ~~l-~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          161 TEL-PAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             SCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             Ccc-CHHHhcCcCCCCEEECCCCc
Confidence            852 34567789999999999853

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.20  E-value=2.3e-11  Score=110.62  Aligned_cols=145  Identities=18%  Similarity=0.237  Sum_probs=73.0

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .++++|++..  +  ....+| .+..+++|++|++++|.+...+.+..+++|++|++++|.++.... ..++.+++|++|
T Consensus        44 ~~L~~L~l~~--n--~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L  117 (197)
T 4ezg_A           44 NSLTYITLAN--I--NVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLL  117 (197)
T ss_dssp             HTCCEEEEES--S--CCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEE
T ss_pred             CCccEEeccC--C--CccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccC-hhhcCCCCCCEE
Confidence            3566666654  1  112344 455566666666666655444455556666666666665532211 124455555555


Q ss_pred             EEeecCCCc--eeecccCCCccEEEEeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhh
Q 009796          214 SFFYCFGLK--RLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE  290 (525)
Q Consensus       214 ~L~~c~~l~--~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~  290 (525)
                      ++++|....  .-.+..                      +++|++|++++|. ......++.+++|+.|+++++.+++- 
T Consensus       118 ~Ls~n~i~~~~~~~l~~----------------------l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~-  174 (197)
T 4ezg_A          118 DISHSAHDDSILTKINT----------------------LPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-  174 (197)
T ss_dssp             ECCSSBCBGGGHHHHTT----------------------CSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCC-
T ss_pred             EecCCccCcHhHHHHhh----------------------CCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcCh-
Confidence            555554322  111223                      3444444444443 11112455666666666666666552 


Q ss_pred             hhhhhcCCCCCcEEEecCc
Q 009796          291 FHPLISKFPLLEDLSIISL  309 (525)
Q Consensus       291 ~~~ll~~~~~Le~L~L~~c  309 (525)
                       . .+..+++|+.|++++.
T Consensus       175 -~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          175 -R-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             -T-TGGGCSSCCEEEECBC
T ss_pred             -H-HhccCCCCCEEEeeCc
Confidence             2 3455666666666653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.20  E-value=1.6e-11  Score=116.30  Aligned_cols=167  Identities=17%  Similarity=0.135  Sum_probs=118.0

Q ss_pred             CeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          136 VKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       136 l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .+++++..    .....+|..+.  ++|+.|+|++|.+..  +..+.++++|++|+|++|.+... ....+..+++|++|
T Consensus        16 ~~~l~~~~----~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L   88 (251)
T 3m19_A           16 KKEVDCQG----KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTL   88 (251)
T ss_dssp             GTEEECTT----CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CeEEecCC----CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEE
Confidence            44555432    33456666554  589999999999887  45678899999999999988431 23446788999999


Q ss_pred             EEeecCCCce--eecccCCCccEEEEeeec-cccceEE-EeCCCccEEEecccc-ccce-eeccCCCCccEEEeeCCCCC
Q 009796          214 SFFYCFGLKR--LRISEAHKLKSLILRFTY-QELESVE-IAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFLPHFN  287 (525)
Q Consensus       214 ~L~~c~~l~~--l~i~~l~~L~~L~l~~c~-~~l~~~~-~~~~~L~~L~l~~~~-~~~~-~~~~~l~~L~~L~L~~~~~~  287 (525)
                      ++++|.....  -.+.++++|+.|++++|. ..+..-. ..+++|+.|+++++. ...+ ..++.+++|+.|+|++|.++
T Consensus        89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            9998864321  123467899999998885 2222211 247889999998888 3333 35788889999999988887


Q ss_pred             hhhhhhhhcCCCCCcEEEecCcc
Q 009796          288 DQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       288 ~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      +. ....+.++++|+.|+|+++.
T Consensus       169 ~~-~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          169 SV-PHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CC-CTTTTTTCTTCCEEECCSCC
T ss_pred             cc-CHHHHhCCCCCCEEEeeCCc
Confidence            53 33456788889999988754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.20  E-value=1.1e-11  Score=121.37  Aligned_cols=151  Identities=19%  Similarity=0.057  Sum_probs=96.8

Q ss_pred             CCCCccEEEecCCcCCC--CCCC--CCCCcccEEEeceeeechH--HHH-HHHhCCcCccEEEEeecCCCcee--ecccC
Q 009796          159 SAKLLTSLKLFGCKLEQ--PSHC--ANLQSLKKLSLDEVYVNDQ--MVQ-SLVRECRVLEDLSFFYCFGLKRL--RISEA  229 (525)
Q Consensus       159 ~~~~L~~L~L~~~~l~~--~~~~--~~l~~L~~L~L~~~~~~~~--~l~-~ll~~c~~Le~L~L~~c~~l~~l--~i~~l  229 (525)
                      .+++|++|++++|.+..  +..+  ..+++|++|+|++|.++..  .+. .-+..+++|++|++++|......  .+.++
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            35679999999998876  4554  8899999999999998431  111 22457999999999998653222  23467


Q ss_pred             CCccEEEEeeec-cc---cce-E-EEeCCCccEEEecccc-cccee----eccCCCCccEEEeeCCCCChhhhhhhhcCC
Q 009796          230 HKLKSLILRFTY-QE---LES-V-EIAVPSLQQLELSFSR-VPRLL----DVAECPHLRKLVLFLPHFNDQEFHPLISKF  298 (525)
Q Consensus       230 ~~L~~L~l~~c~-~~---l~~-~-~~~~~~L~~L~l~~~~-~~~~~----~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~  298 (525)
                      ++|+.|++++|. ..   +.. . ...+++|++|++++|. ...+.    .++.+++|+.|+|++|.+++.. +..+..+
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~  247 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATV-NPSAPRC  247 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC-CSCCSSC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccc-hhhHHhc
Confidence            888888888875 11   111 1 1246677777777776 21111    2456677777777777776531 2222233


Q ss_pred             ---CCCcEEEecCcc
Q 009796          299 ---PLLEDLSIISLE  310 (525)
Q Consensus       299 ---~~Le~L~L~~c~  310 (525)
                         ++|++|+|+++.
T Consensus       248 ~~~~~L~~L~Ls~N~  262 (310)
T 4glp_A          248 MWSSALNSLNLSFAG  262 (310)
T ss_dssp             CCCTTCCCEECCSSC
T ss_pred             cCcCcCCEEECCCCC
Confidence               577777776653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.19  E-value=2.7e-11  Score=110.20  Aligned_cols=127  Identities=16%  Similarity=0.258  Sum_probs=88.6

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le  211 (525)
                      .++++|++..  +   ....+..+..+++|++|++++|.+..  +..+..+++|++|++++|.+++.. ...+..+++|+
T Consensus        66 ~~L~~L~l~~--n---~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~  139 (197)
T 4ezg_A           66 HNIKDLTINN--I---HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI-LTKINTLPKVN  139 (197)
T ss_dssp             TTCSEEEEES--C---CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGG-HHHHTTCSSCC
T ss_pred             CCCCEEEccC--C---CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHh-HHHHhhCCCCC
Confidence            5899999987  2   22333467789999999999999986  777889999999999999996543 35578999999


Q ss_pred             EEEEeecCCCceee-cccCCCccEEEEeeeccccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCCh
Q 009796          212 DLSFFYCFGLKRLR-ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFND  288 (525)
Q Consensus       212 ~L~L~~c~~l~~l~-i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~  288 (525)
                      +|++++|..+..+. +.++++                      |++|++++|.......+..+++|+.|+++++.+.+
T Consensus       140 ~L~L~~n~~i~~~~~l~~l~~----------------------L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          140 SIDLSYNGAITDIMPLKTLPE----------------------LKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             EEECCSCTBCCCCGGGGGCSS----------------------CCEEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred             EEEccCCCCccccHhhcCCCC----------------------CCEEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence            99999997444332 333444                      44555554441111156677778888887777654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.19  E-value=1.2e-10  Score=125.20  Aligned_cols=125  Identities=22%  Similarity=0.257  Sum_probs=79.6

Q ss_pred             cCCeEEEEEeecCCCCcccCCc-cccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796          134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L  210 (525)
                      ..+++|+|+.    .....+|. .+.++++|++|+|++|.+..  +..+.++++|++|+|++|.++.- ....+.++++|
T Consensus        52 ~~~~~LdLs~----N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSF----NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTT----SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTC
T ss_pred             cCCCEEEeeC----CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCC
Confidence            3677777754    22334443 45667888888888887776  34567788888888888876321 12346677888


Q ss_pred             cEEEEeecCC--CceeecccCCCccEEEEeeec-cc--cceEEEeCCCccEEEecccc
Q 009796          211 EDLSFFYCFG--LKRLRISEAHKLKSLILRFTY-QE--LESVEIAVPSLQQLELSFSR  263 (525)
Q Consensus       211 e~L~L~~c~~--l~~l~i~~l~~L~~L~l~~c~-~~--l~~~~~~~~~L~~L~l~~~~  263 (525)
                      ++|++++|..  +....+.++++|+.|++++|. ..  .......+++|++|+++++.
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            8888887743  222335567788888888775 11  11222246778888887775

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.18  E-value=1.1e-11  Score=124.01  Aligned_cols=253  Identities=9%  Similarity=0.035  Sum_probs=138.1

Q ss_pred             EEEecCCcCCC--CCCCCCCCcccEEEeceeeechH---HHHHHHhCCc-CccEEEEeecCCCce--eeccc-----CCC
Q 009796          165 SLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQ---MVQSLVRECR-VLEDLSFFYCFGLKR--LRISE-----AHK  231 (525)
Q Consensus       165 ~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~---~l~~ll~~c~-~Le~L~L~~c~~l~~--l~i~~-----l~~  231 (525)
                      .++++.+.+.+  +......++|++|+|++|.+++.   .+...+..++ +|++|+|++|..-..  -.+..     +++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45778888877  44445556699999999998443   3445677888 999999999854221  11222     278


Q ss_pred             ccEEEEeeec-cccce--E---EEeC-CCccEEEecccc-cc-ceee----ccC-CCCccEEEeeCCCCChhh---hhhh
Q 009796          232 LKSLILRFTY-QELES--V---EIAV-PSLQQLELSFSR-VP-RLLD----VAE-CPHLRKLVLFLPHFNDQE---FHPL  294 (525)
Q Consensus       232 L~~L~l~~c~-~~l~~--~---~~~~-~~L~~L~l~~~~-~~-~~~~----~~~-l~~L~~L~L~~~~~~~~~---~~~l  294 (525)
                      |+.|++++|. .....  +   .... ++|++|++++|. .. ....    +.. .++|+.|+|++|.+++..   +...
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999998886 11111  1   0123 788888888887 21 1111    333 358888888888877533   3334


Q ss_pred             hcCCC-CCcEEEecCccchh-------HhhhcC-cccceEccccccchhhhcccCCCcceEEEecCCCCccccc-CCCCc
Q 009796          295 ISKFP-LLEDLSIISLETLE-------RIMISS-NRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTN-APCPL  364 (525)
Q Consensus       295 l~~~~-~Le~L~L~~c~~l~-------~~~~~~-~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~-~~~L~  364 (525)
                      +...+ +|++|+|++|..-.       .....+ ++|+.|+++++. +......            .++..+.. .++|+
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~------------~l~~~l~~~~~~L~  228 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYA------------ELAYIFSSIPNHVV  228 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHH------------HHHHHHHHSCTTCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHH------------HHHHHHhcCCCCce
Confidence            45555 88888888874211       111112 356666665543 1110000            00001111 24566


Q ss_pred             eEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeee-eccccccCCCCCCCcccceEEEEEee
Q 009796          365 NVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFN-IDEFRSCHPSLPLQVESLSLFMESFS  433 (525)
Q Consensus       365 ~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~-lp~~~~~~~~~~~~~~L~~L~L~~~~  433 (525)
                      .++++. +.+.......+..++..+++|++|.++.|....... .-..+. . .++.+++|+.|++.+|.
T Consensus       229 ~L~Ls~-N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~-~-~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          229 SLNLCL-NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG-A-AFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             EEECCS-SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH-T-TSTTCCEEEEECTTSCB
T ss_pred             EEECcC-CCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH-H-HhccCCceEEEecCCCc
Confidence            666654 333332223334445666777777777665221100 000000 1 34566677777777663

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.16  E-value=4.5e-11  Score=127.26  Aligned_cols=167  Identities=22%  Similarity=0.229  Sum_probs=123.1

Q ss_pred             HcCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccE
Q 009796          133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (525)
Q Consensus       133 ~~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~  212 (525)
                      ..+|+.|++..    .....+| .+..+++|+.|+|++|.+.....+..+++|+.|+|++|.+..  ++ .+..+++|++
T Consensus        42 L~~L~~L~l~~----n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~  113 (605)
T 1m9s_A           42 LNSIDQIIANN----SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKS  113 (605)
T ss_dssp             HTTCCCCBCTT----CCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCE
T ss_pred             CCCCCEEECcC----CCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCE
Confidence            35788887754    1223344 577889999999999998873337889999999999998843  22 3678999999


Q ss_pred             EEEeecCCCceeecccCCCccEEEEeeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhh
Q 009796          213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEF  291 (525)
Q Consensus       213 L~L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~  291 (525)
                      |+|++|.....-.+..+++|+.|+|++|. ..+. ....+++|+.|++++|.......+..+++|+.|+|++|.+++  +
T Consensus       114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~--l  190 (605)
T 1m9s_A          114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--L  190 (605)
T ss_dssp             EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCG-GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--C
T ss_pred             EEecCCCCCCCccccCCCccCEEECCCCccCCch-hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC--C
Confidence            99999865433335678899999999886 2221 122578999999999882211228889999999999998887  3


Q ss_pred             hhhhcCCCCCcEEEecCccc
Q 009796          292 HPLISKFPLLEDLSIISLET  311 (525)
Q Consensus       292 ~~ll~~~~~Le~L~L~~c~~  311 (525)
                       ..+..+++|+.|+|+++..
T Consensus       191 -~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          191 -RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             -GGGTTCTTCSEEECCSEEE
T ss_pred             -hHHccCCCCCEEEccCCcC
Confidence             3467889999999988653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.16  E-value=2.9e-11  Score=128.78  Aligned_cols=166  Identities=17%  Similarity=0.176  Sum_probs=122.5

Q ss_pred             cCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEE
Q 009796          158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL  237 (525)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l  237 (525)
                      ..+++|+.|++++|.+...+.+..+++|+.|+|++|.+..-  .. +..+++|+.|+|++|.....-.+..+++|+.|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL  116 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred             hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCC--hh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence            45678899999999887755678899999999999988432  12 7889999999999886433224567789999999


Q ss_pred             eeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc--hhH
Q 009796          238 RFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET--LER  314 (525)
Q Consensus       238 ~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~--l~~  314 (525)
                      ++|. ..+.. ...+++|+.|++++|.......++.+++|+.|+|++|.+++.  .. +..+++|+.|+|+++..  +..
T Consensus       117 s~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~i~~l~~  192 (605)
T 1m9s_A          117 EHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNHISDLRA  192 (605)
T ss_dssp             TTSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred             cCCCCCCCcc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCc--hh-hccCCCCCEEECcCCCCCCChH
Confidence            9886 22221 225789999999998822225688899999999999988874  22 78889999999998743  211


Q ss_pred             hhhcCcccceEcccccc
Q 009796          315 IMISSNRLMHLEVYNCS  331 (525)
Q Consensus       315 ~~~~~~~L~~L~l~~c~  331 (525)
                       ...+++|+.|++++++
T Consensus       193 -l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          193 -LAGLKNLDVLELFSQE  208 (605)
T ss_dssp             -GTTCTTCSEEECCSEE
T ss_pred             -HccCCCCCEEEccCCc
Confidence             2235788888888753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.10  E-value=1.2e-10  Score=110.92  Aligned_cols=146  Identities=14%  Similarity=0.111  Sum_probs=96.7

Q ss_pred             ccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEE
Q 009796          157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI  236 (525)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~  236 (525)
                      +..+++|++|++++|.+...+.+..+++|++|+|++|.+++-  .. +..+++|++|++++|..-.--.+.. ++|+.|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~  112 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLF  112 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEE
T ss_pred             hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCccCCcCcccc-CcccEEE
Confidence            345677788888877776633566777888888887777332  12 6777888888887775322111223 6777777


Q ss_pred             Eeeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796          237 LRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       237 l~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      +++|. ..+.. ...+++|+.|+++++.......++.+++|+.|++++|.+++.   ..+..+++|+.|+++++.
T Consensus       113 L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          113 LDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CCSSCCSBSGG-GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred             ccCCccCCChh-hcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc
Confidence            77775 22221 124678888888887722123577888888888888888773   456778888888888754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.04  E-value=2.1e-10  Score=108.48  Aligned_cols=151  Identities=21%  Similarity=0.153  Sum_probs=112.1

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le  211 (525)
                      ..++.|++..  + ......+..+..+++|++|+|++|.+..  +..+..+++|++|+|++|.++.- ....+..+++|+
T Consensus        35 ~~l~~L~L~~--n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~  110 (251)
T 3m19_A           35 ADTEKLDLQS--T-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLD  110 (251)
T ss_dssp             TTCCEEECTT--S-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCC
T ss_pred             CCCCEEEccC--C-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCC
Confidence            3688888764  1 1222334456788999999999999887  45578899999999999988421 234567899999


Q ss_pred             EEEEeecCCCceee---cccCCCccEEEEeeec-cccceEEE-eCCCccEEEecccc--ccceeeccCCCCccEEEeeCC
Q 009796          212 DLSFFYCFGLKRLR---ISEAHKLKSLILRFTY-QELESVEI-AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLP  284 (525)
Q Consensus       212 ~L~L~~c~~l~~l~---i~~l~~L~~L~l~~c~-~~l~~~~~-~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~  284 (525)
                      +|+|++|.. ..+.   +.++++|+.|++++|. ..+..-.+ .+++|++|+++++.  ...+..+..+++|+.|++++|
T Consensus       111 ~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          111 KLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             EEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCcC-CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            999999854 3332   4567999999999996 22222112 57999999999998  333346888999999999999


Q ss_pred             CCChh
Q 009796          285 HFNDQ  289 (525)
Q Consensus       285 ~~~~~  289 (525)
                      .++.+
T Consensus       190 ~~~c~  194 (251)
T 3m19_A          190 QFDCS  194 (251)
T ss_dssp             CBCTT
T ss_pred             ceeCC
Confidence            88764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.03  E-value=9.1e-10  Score=109.53  Aligned_cols=215  Identities=13%  Similarity=0.095  Sum_probs=123.4

Q ss_pred             cccCCccccCCCCccEEEecCCcCCC-C-CCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--
Q 009796          150 VNALPQTIFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--  225 (525)
Q Consensus       150 ~~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~--  225 (525)
                      ...+|..+  .+++++|+|++|.++. + ..+.++++|++|+|++|.+....-...+.++++|.++...++..+..+.  
T Consensus        21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~   98 (350)
T 4ay9_X           21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   98 (350)
T ss_dssp             CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred             CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence            34566655  3578888888888877 4 3567888888888888875221112235677787776666665555553  


Q ss_pred             -cccCCCccEEEEeeec-cccceE-EEeCCCccEEEecccc--ccc-eeeccCC-CCccEEEeeCCCCChhhhhhhhcCC
Q 009796          226 -ISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR--VPR-LLDVAEC-PHLRKLVLFLPHFNDQEFHPLISKF  298 (525)
Q Consensus       226 -i~~l~~L~~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~--~~~-~~~~~~l-~~L~~L~L~~~~~~~~~~~~ll~~~  298 (525)
                       +..+++|+.|++++|. ..+... .....++..|++.++.  ... ...+..+ ..++.|+++++.++.  +.......
T Consensus        99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f~~  176 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAFNG  176 (350)
T ss_dssp             SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSSTT
T ss_pred             hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhccc
Confidence             3467888888888885 222222 1245566777776544  111 1233444 357778888887765  33323344


Q ss_pred             CCCcEEEecCccchhHhhh----cCcccceEccccccchhhhccc-CCCcceEEEecCCCC---cccccCCCCceEEEE
Q 009796          299 PLLEDLSIISLETLERIMI----SSNRLMHLEVYNCSGLNRINVD-APNLVSFDFEDNPIP---IVSTNAPCPLNVLFS  369 (525)
Q Consensus       299 ~~Le~L~L~~c~~l~~~~~----~~~~L~~L~l~~c~~L~~l~~~-~p~L~~l~~~g~~~~---~~~~~~~~L~~l~l~  369 (525)
                      .+|++|.+.++..++.+..    ..++|+.|++++. +++.+... ..+|+.|+..+...-   .++.++++|+.+++.
T Consensus       177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT  254 (350)
T ss_dssp             EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred             cchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence            5677777776655544432    2456667776653 24333222 334555554443211   123345666666664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.02  E-value=1.4e-10  Score=102.38  Aligned_cols=127  Identities=22%  Similarity=0.177  Sum_probs=73.8

Q ss_pred             CCccEEEecCCcCC--C-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEE
Q 009796          161 KLLTSLKLFGCKLE--Q-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL  237 (525)
Q Consensus       161 ~~L~~L~L~~~~l~--~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l  237 (525)
                      ++|++|++++|.+.  . +..+..+++|++|++++|.++..   ..+..+++|++|++++|.....              
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~--------------   86 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG--------------   86 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC--------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH--------------
Confidence            56777777777766  2 44456667777777776665321   3344455555555555432111              


Q ss_pred             eeeccccceEEEeCCCccEEEecccc-ccc--eeeccCCCCccEEEeeCCCCChhhh--hhhhcCCCCCcEEEecCcc
Q 009796          238 RFTYQELESVEIAVPSLQQLELSFSR-VPR--LLDVAECPHLRKLVLFLPHFNDQEF--HPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       238 ~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~l~~L~~L~L~~~~~~~~~~--~~ll~~~~~Le~L~L~~c~  310 (525)
                            ++.....+++|++|++++|. ...  ...+..+++|+.|++++|.+++...  ...+..+++|+.|++.+|.
T Consensus        87 ------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           87 ------LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             ------CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             ------HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence                  11111135666666666666 221  2466777888888888887765311  2356778888888877754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.98  E-value=1.3e-10  Score=110.72  Aligned_cols=143  Identities=13%  Similarity=0.068  Sum_probs=110.4

Q ss_pred             CCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEee
Q 009796          160 AKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRF  239 (525)
Q Consensus       160 ~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~  239 (525)
                      +.+++.++++++.+.....+..+++|++|++++|.++.  ++ -+..+++|++|++++|.......+..+++|+.|++++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence            45677778888877763356779999999999998843  22 3678999999999998643333367789999999999


Q ss_pred             ec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796          240 TY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       240 c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      |. ..+..+..  ++|+.|++++|.......++.+++|+.|++++|.+++.  . .+..+++|+.|+++++.
T Consensus        95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A           95 NRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             SCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSC
T ss_pred             CccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCc
Confidence            97 33333332  89999999999822234688999999999999999873  3 47788999999999864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.97  E-value=3.5e-10  Score=103.60  Aligned_cols=135  Identities=18%  Similarity=0.143  Sum_probs=78.9

Q ss_pred             cccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--
Q 009796          150 VNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--  225 (525)
Q Consensus       150 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~--  225 (525)
                      ...+|..+  .++|++|++++|.+..  +..+..+++|++|++++|.+.. .....+..+++|++|++++|... .+.  
T Consensus        19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~   94 (208)
T 2o6s_A           19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQ-SLPNG   94 (208)
T ss_dssp             CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred             ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCC-ccCHh
Confidence            34555444  3578999999988877  3346788899999998887742 12234567788888888877532 221  


Q ss_pred             -cccCCCccEEEEeeeccccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEE
Q 009796          226 -ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL  304 (525)
Q Consensus       226 -i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L  304 (525)
                       +..+++|+.|++++|.  +..                  ..+..++.+++|+.|+++++.+++. ....+.++++|++|
T Consensus        95 ~~~~l~~L~~L~L~~N~--l~~------------------~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L  153 (208)
T 2o6s_A           95 VFDKLTQLKELALNTNQ--LQS------------------LPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYI  153 (208)
T ss_dssp             TTTTCTTCCEEECCSSC--CCC------------------CCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEE
T ss_pred             HhcCccCCCEEEcCCCc--Ccc------------------cCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEE
Confidence             2344555555555543  111                  1111245556666666666655542 22334556666666


Q ss_pred             EecCc
Q 009796          305 SIISL  309 (525)
Q Consensus       305 ~L~~c  309 (525)
                      +++++
T Consensus       154 ~l~~N  158 (208)
T 2o6s_A          154 WLHDN  158 (208)
T ss_dssp             ECCSC
T ss_pred             EecCC
Confidence            66654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.96  E-value=2.1e-09  Score=113.31  Aligned_cols=151  Identities=14%  Similarity=0.018  Sum_probs=102.2

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .+++.|++..  +  ....+|..++  ++|++|+|++|.+...+  ..+++|++|+|++|.++.  ++. +..  +|++|
T Consensus        59 ~~L~~L~Ls~--n--~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L  125 (571)
T 3cvr_A           59 NQFSELQLNR--L--NLSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LPA--SLKHL  125 (571)
T ss_dssp             TTCSEEECCS--S--CCSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEE
T ss_pred             CCccEEEeCC--C--CCCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hhc--CCCEE
Confidence            4888888865  2  2234777664  78999999999888722  568899999999998843  333 332  89999


Q ss_pred             EEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhh
Q 009796          214 SFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFH  292 (525)
Q Consensus       214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~  292 (525)
                      ++++|... .++. .+++|+.|++++|.  +..+....++|+.|++++|. ...+. +.  ++|+.|+|++|.++.  ++
T Consensus       126 ~Ls~N~l~-~lp~-~l~~L~~L~Ls~N~--l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~--lp  196 (571)
T 3cvr_A          126 DVDNNQLT-MLPE-LPALLEYINADNNQ--LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES--LP  196 (571)
T ss_dssp             ECCSSCCS-CCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS--CC
T ss_pred             ECCCCcCC-CCCC-cCccccEEeCCCCc--cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc--hh
Confidence            99888642 2333 56888888888886  22222256788888888887 33433 44  788888888888774  33


Q ss_pred             hhhcCCCCC-------cEEEecCc
Q 009796          293 PLISKFPLL-------EDLSIISL  309 (525)
Q Consensus       293 ~ll~~~~~L-------e~L~L~~c  309 (525)
                      . +..  +|       +.|+|+++
T Consensus       197 ~-~~~--~L~~~~~~L~~L~Ls~N  217 (571)
T 3cvr_A          197 A-VPV--RNHHSEETEIFFRCREN  217 (571)
T ss_dssp             C-CC----------CCEEEECCSS
T ss_pred             h-HHH--hhhcccccceEEecCCC
Confidence            3 222  55       77777764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.94  E-value=1.4e-10  Score=100.21  Aligned_cols=125  Identities=18%  Similarity=0.129  Sum_probs=75.4

Q ss_pred             CCCccEEEecCCcCC--C-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEE
Q 009796          160 AKLLTSLKLFGCKLE--Q-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI  236 (525)
Q Consensus       160 ~~~L~~L~L~~~~l~--~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~  236 (525)
                      .++|+.|++++|.+.  . +..+..+++|++|++++|.++..   ..+..+++|++|++++|.....             
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-------------   79 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG-------------   79 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-------------
Confidence            367888888888887  3 56667788888888888877432   3355666666666666543211             


Q ss_pred             EeeeccccceEEEeCCCccEEEecccc-cc--ceeeccCCCCccEEEeeCCCCChhhh--hhhhcCCCCCcEEEec
Q 009796          237 LRFTYQELESVEIAVPSLQQLELSFSR-VP--RLLDVAECPHLRKLVLFLPHFNDQEF--HPLISKFPLLEDLSII  307 (525)
Q Consensus       237 l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~--~~~~~~~l~~L~~L~L~~~~~~~~~~--~~ll~~~~~Le~L~L~  307 (525)
                             ++.....+++|++|++++|. ..  .+..++.+++|+.|++++|.+++...  ...+..+++|+.|+++
T Consensus        80 -------~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           80 -------LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             -------THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             -------HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence                   11111124556666665555 21  12456677777777777776665311  1356667777777664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.93  E-value=2.9e-09  Score=105.90  Aligned_cols=208  Identities=11%  Similarity=-0.002  Sum_probs=137.1

Q ss_pred             cCCeEEEEEeecCCCCcccCCcc-ccCCCCccEEEecCCcCCC---CCCCCCCCcccE-EEeceeeechHHHHHHHhCCc
Q 009796          134 NGVKELDFEVITDKNSVNALPQT-IFSAKLLTSLKLFGCKLEQ---PSHCANLQSLKK-LSLDEVYVNDQMVQSLVRECR  208 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~-L~L~~~~~~~~~l~~ll~~c~  208 (525)
                      .++++|+|+.    .....+|.. +.++++|++|+|++|.+..   +..+.++++|+. +.+..+.+.. ..+..+.+++
T Consensus        30 ~~l~~L~Ls~----N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~  104 (350)
T 4ay9_X           30 RNAIELRFVL----TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP  104 (350)
T ss_dssp             TTCSEEEEES----CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred             CCCCEEEccC----CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence            4789999876    234467764 5678999999999998755   345678888876 4555565521 1133467899


Q ss_pred             CccEEEEeecCCCce--eecccCCCccEEEEeeeccccceEEE----e-CCCccEEEecccc-ccceeeccCCCCccEEE
Q 009796          209 VLEDLSFFYCFGLKR--LRISEAHKLKSLILRFTYQELESVEI----A-VPSLQQLELSFSR-VPRLLDVAECPHLRKLV  280 (525)
Q Consensus       209 ~Le~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~~~l~~~~~----~-~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~  280 (525)
                      +|++|++++|.....  .......++..|++.++. .+..+..    . ...++.|+++++. ...+......++|+.|.
T Consensus       105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~  183 (350)
T 4ay9_X          105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN  183 (350)
T ss_dssp             TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred             ccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhccccccccCCChhhccccchhHHh
Confidence            999999999864322  222234567788887665 4444432    2 3468889999987 44444445567788898


Q ss_pred             eeC-CCCChhhhhhhhcCCCCCcEEEecCccchhHhhh-cCcccceEccccccchhhhc--ccCCCcceEEEe
Q 009796          281 LFL-PHFNDQEFHPLISKFPLLEDLSIISLETLERIMI-SSNRLMHLEVYNCSGLNRIN--VDAPNLVSFDFE  349 (525)
Q Consensus       281 L~~-~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~-~~~~L~~L~l~~c~~L~~l~--~~~p~L~~l~~~  349 (525)
                      +.. +.++. .....+.++++|+.|+|+++. ++.+.. .+.+|++|.+.++.+++.+.  ...++|+.+.+.
T Consensus       184 l~~~n~l~~-i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          184 LSDNNNLEE-LPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT  254 (350)
T ss_dssp             CTTCTTCCC-CCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred             hccCCcccC-CCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence            865 44443 234567888999999999864 444322 25678888888877776654  234666666653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.92  E-value=1.4e-09  Score=101.21  Aligned_cols=135  Identities=16%  Similarity=0.115  Sum_probs=83.6

Q ss_pred             CcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee-
Q 009796          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-  225 (525)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~-  225 (525)
                      ....+|..+.  ++|++|+|++|.+..  +..+.++++|++|+|++|.+..- ....+.++++|++|+|++|.. ..+. 
T Consensus        30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l-~~l~~  105 (229)
T 3e6j_A           30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQL-TVLPS  105 (229)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCT
T ss_pred             CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcC-CccCh
Confidence            3445665443  778888888888776  45567788888888888877321 123356677788888877743 2221 


Q ss_pred             --cccCCCccEEEEeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCc
Q 009796          226 --ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE  302 (525)
Q Consensus       226 --i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le  302 (525)
                        +..++                      +|+.|+++++. ...+..+..+++|+.|+|++|.++.- ....+..+++|+
T Consensus       106 ~~~~~l~----------------------~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~  162 (229)
T 3e6j_A          106 AVFDRLV----------------------HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLT  162 (229)
T ss_dssp             TTTTTCT----------------------TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred             hHhCcch----------------------hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCC
Confidence              22334                      44555555444 33344556677777777777776642 234466677777


Q ss_pred             EEEecCcc
Q 009796          303 DLSIISLE  310 (525)
Q Consensus       303 ~L~L~~c~  310 (525)
                      .|++.+.+
T Consensus       163 ~L~l~~N~  170 (229)
T 3e6j_A          163 HAYLFGNP  170 (229)
T ss_dssp             EEECTTSC
T ss_pred             EEEeeCCC
Confidence            77777643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.91  E-value=1.2e-09  Score=101.07  Aligned_cols=133  Identities=14%  Similarity=0.128  Sum_probs=73.3

Q ss_pred             cCCccccCCCCccEEEecCCcCCC-C--CCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee--ec
Q 009796          152 ALPQTIFSAKLLTSLKLFGCKLEQ-P--SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RI  226 (525)
Q Consensus       152 ~lp~~l~~~~~L~~L~L~~~~l~~-~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l--~i  226 (525)
                      .+|..+.  ..+++|+|++|.+.. +  ..+..+++|++|+|++|.++.- ....+.++++|++|+|++|......  .+
T Consensus        25 ~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  101 (220)
T 2v70_A           25 KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLENVQHKMF  101 (220)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCGGGG
T ss_pred             cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccCccCHhHh
Confidence            4554432  345666777666655 1  2245666666666666665221 1123455566666666655431111  12


Q ss_pred             ccCCCccEEEEeeeccccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEE
Q 009796          227 SEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL  304 (525)
Q Consensus       227 ~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L  304 (525)
                      .                      .+++|++|+++++.  ...+..+..+++|+.|+|++|.+++. .+..+..+++|+.|
T Consensus       102 ~----------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L  158 (220)
T 2v70_A          102 K----------------------GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTL  158 (220)
T ss_dssp             T----------------------TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEE
T ss_pred             c----------------------CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEE
Confidence            2                      34556666666655  22234566777777777777777653 24456667777777


Q ss_pred             EecCcc
Q 009796          305 SIISLE  310 (525)
Q Consensus       305 ~L~~c~  310 (525)
                      +|+++.
T Consensus       159 ~L~~N~  164 (220)
T 2v70_A          159 NLLANP  164 (220)
T ss_dssp             ECCSCC
T ss_pred             EecCcC
Confidence            777643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.90  E-value=4.9e-09  Score=110.45  Aligned_cols=175  Identities=15%  Similarity=0.063  Sum_probs=117.6

Q ss_pred             CCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEee
Q 009796          161 KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRF  239 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~  239 (525)
                      .+|+.|+|++|.+.. |..+  +++|++|+|++|.++.  ++   ..+++|++|++++|... .++.- ..+|+.|++++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~-~ip~l-~~~L~~L~Ls~  129 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLS-TLPEL-PASLKHLDVDN  129 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCS-CCCCC-CTTCCEEECCS
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCC-Ccchh-hcCCCEEECCC
Confidence            489999999999887 4433  4899999999999852  33   56899999999998542 23321 13899999999


Q ss_pred             ec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhhh
Q 009796          240 TY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMI  317 (525)
Q Consensus       240 c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~  317 (525)
                      |. ..++.   .+++|+.|++++|. ...+.   .+++|+.|+|++|.+++  ++. +.  ++|+.|+|+++. ++.+..
T Consensus       130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~-L~~lp~  197 (571)
T 3cvr_A          130 NQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL-LESLPA  197 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC-CSSCCC
T ss_pred             CcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC-CCchhh
Confidence            86 33443   67899999999988 33332   57889999999998877  344 33  889999998853 222111


Q ss_pred             cCcccceEccccccchhhhcccCCCcceEEEecCCC---CcccccCCCCceEEEEe
Q 009796          318 SSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPI---PIVSTNAPCPLNVLFSN  370 (525)
Q Consensus       318 ~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~---~~~~~~~~~L~~l~l~~  370 (525)
                      -..+|              ....+.|+.|.++++.+   |..+..+++|+.++++.
T Consensus       198 ~~~~L--------------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~  239 (571)
T 3cvr_A          198 VPVRN--------------HHSEETEIFFRCRENRITHIPENILSLDPTCTIILED  239 (571)
T ss_dssp             CC----------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCS
T ss_pred             HHHhh--------------hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeC
Confidence            00112              11122335566655544   34455688899998874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.88  E-value=7.4e-10  Score=97.69  Aligned_cols=105  Identities=23%  Similarity=0.100  Sum_probs=77.0

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .++++|++..  +......+|..+..+++|++|++++|.+.....+..+++|++|+|++|.+... ++..+.++++|++|
T Consensus        24 ~~L~~L~l~~--n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDN--CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCS--CBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred             ccCCEEECCC--CCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence            4799999876  32222478888888999999999999988766778899999999999998542 56677789999999


Q ss_pred             EEeecCCCce---eecccCCCccEEEEeeec
Q 009796          214 SFFYCFGLKR---LRISEAHKLKSLILRFTY  241 (525)
Q Consensus       214 ~L~~c~~l~~---l~i~~l~~L~~L~l~~c~  241 (525)
                      ++++|.....   ..+..+++|+.|++++|.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence            9999854221   123344555555555443

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.86  E-value=1.1e-09  Score=76.21  Aligned_cols=40  Identities=15%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             CCCccCCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhhh
Q 009796            5 VDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQ   44 (525)
Q Consensus         5 ~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw   44 (525)
                      .+.+.++.||+||+.+||+|||.+|+++++.|||+|+.+.
T Consensus         4 ~~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             -----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            3457899999999999999999999999999999999763

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.85  E-value=1.8e-09  Score=98.78  Aligned_cols=140  Identities=15%  Similarity=0.114  Sum_probs=91.6

Q ss_pred             cEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee---cccCCCccEEEEee
Q 009796          164 TSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKLKSLILRF  239 (525)
Q Consensus       164 ~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~---i~~l~~L~~L~l~~  239 (525)
                      +.++.+++.+.. |..  -.++|++|+++++.++. .....+..+++|++|++++|.. ..+.   +..           
T Consensus        10 ~~v~c~~~~l~~~p~~--~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~-----------   74 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTG--IPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNK-----------   74 (208)
T ss_dssp             TEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTT-----------
T ss_pred             CEEEecCCCccCCCCC--CCCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCcc-CccChhhcCC-----------
Confidence            466677766655 322  25689999999998742 1233456788888888887743 2221   122           


Q ss_pred             eccccceEEEeCCCccEEEecccc-cc-ceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccch--h-H
Q 009796          240 TYQELESVEIAVPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL--E-R  314 (525)
Q Consensus       240 c~~~l~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l--~-~  314 (525)
                                 +++|++|+++++. .. .+..++.+++|+.|+++++.+++. ....+.++++|++|+++++...  . .
T Consensus        75 -----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~  142 (208)
T 2o6s_A           75 -----------LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL-PDGVFDKLTQLKDLRLYQNQLKSVPDG  142 (208)
T ss_dssp             -----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             -----------CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCccc-CHhHhccCCcCCEEECCCCccceeCHH
Confidence                       3455555555555 21 222467899999999999988863 3445788999999999987431  1 1


Q ss_pred             hhhcCcccceEccccc
Q 009796          315 IMISSNRLMHLEVYNC  330 (525)
Q Consensus       315 ~~~~~~~L~~L~l~~c  330 (525)
                      .....++|+.|++.+.
T Consensus       143 ~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          143 VFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             TTTTCTTCCEEECCSC
T ss_pred             HhccCCCccEEEecCC
Confidence            1223578999999884

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.82  E-value=4.6e-09  Score=97.72  Aligned_cols=141  Identities=13%  Similarity=0.104  Sum_probs=94.7

Q ss_pred             ccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeec
Q 009796          163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY  241 (525)
Q Consensus       163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~  241 (525)
                      -+.++.+++.+.. |...  .++|++|+|++|.+..- ....+.++++|++|+|++|.. ..+....             
T Consensus        21 ~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~~~-------------   83 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPVGV-------------   83 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTT-------------
T ss_pred             CCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcChhh-------------
Confidence            5678888887776 4433  38999999999988431 234467788888888888753 2222110             


Q ss_pred             cccceEEEeCCCccEEEecccc-cc-ceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHh----
Q 009796          242 QELESVEIAVPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERI----  315 (525)
Q Consensus       242 ~~l~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~----  315 (525)
                            ...+++|+.|+++++. .. .+..++.+++|+.|+|++|.++.  ++..+.++++|+.|+|+++.. ..+    
T Consensus        84 ------~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l-~~~~~~~  154 (229)
T 3e6j_A           84 ------FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQL-KSIPHGA  154 (229)
T ss_dssp             ------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCC-CCCCTTT
T ss_pred             ------cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcC-CccCHHH
Confidence                  0123455555555555 21 22346889999999999999984  555668999999999998642 222    


Q ss_pred             hhcCcccceEcccc
Q 009796          316 MISSNRLMHLEVYN  329 (525)
Q Consensus       316 ~~~~~~L~~L~l~~  329 (525)
                      ....++|+.|++.+
T Consensus       155 ~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          155 FDRLSSLTHAYLFG  168 (229)
T ss_dssp             TTTCTTCCEEECTT
T ss_pred             HhCCCCCCEEEeeC
Confidence            22357888888876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.82  E-value=1.9e-09  Score=93.05  Aligned_cols=105  Identities=23%  Similarity=0.180  Sum_probs=77.3

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .++++|++..  +......+|..+..+++|++|++++|.+.....+..+++|++|+|++|.+... ++..+..+++|++|
T Consensus        17 ~~l~~L~l~~--n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDN--SRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTT--CBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred             ccCeEEEccC--CcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence            4688888765  22222467887788999999999999888766678899999999999998542 66777889999999


Q ss_pred             EEeecCCCce---eecccCCCccEEEEeeec
Q 009796          214 SFFYCFGLKR---LRISEAHKLKSLILRFTY  241 (525)
Q Consensus       214 ~L~~c~~l~~---l~i~~l~~L~~L~l~~c~  241 (525)
                      ++++|.....   ..+..+++|+.|++++|.
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            9999864221   123345555555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.82  E-value=4e-09  Score=97.52  Aligned_cols=135  Identities=15%  Similarity=0.214  Sum_probs=83.3

Q ss_pred             CcccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee-
Q 009796          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-  225 (525)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~-  225 (525)
                      ....+|..+.  ++|+.|+|++|.+..  +..+..+++|++|+|++|.+..- .+..+.++++|++|+|++|... .+. 
T Consensus        22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~-~l~~   97 (220)
T 2v9t_B           22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKIT-ELPK   97 (220)
T ss_dssp             CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred             CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCC-ccCH
Confidence            3445665543  678888888888776  34667788888888888877321 1233566777777777776432 211 


Q ss_pred             --cccCCCccEEEEeeeccccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCC
Q 009796          226 --ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLL  301 (525)
Q Consensus       226 --i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~L  301 (525)
                        +.+                      +++|+.|+++++.  ...+..+..+++|+.|+|++|.++.. ....+..+++|
T Consensus        98 ~~f~~----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L  154 (220)
T 2v9t_B           98 SLFEG----------------------LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAI  154 (220)
T ss_dssp             TTTTT----------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTC
T ss_pred             hHccC----------------------CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCC
Confidence              123                      3455555555554  22233566777777777777777653 23345667777


Q ss_pred             cEEEecCcc
Q 009796          302 EDLSIISLE  310 (525)
Q Consensus       302 e~L~L~~c~  310 (525)
                      +.|+|++.+
T Consensus       155 ~~L~L~~N~  163 (220)
T 2v9t_B          155 QTMHLAQNP  163 (220)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEeCCCC
Confidence            777777643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.79  E-value=5.5e-09  Score=96.56  Aligned_cols=139  Identities=12%  Similarity=0.057  Sum_probs=91.7

Q ss_pred             cEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee---ecccCCCccEEEEee
Q 009796          164 TSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL---RISEAHKLKSLILRF  239 (525)
Q Consensus       164 ~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l---~i~~l~~L~~L~l~~  239 (525)
                      +.++++++.+.. |...  .++|+.|+|++|.+..- ....+..+++|++|+|++|.. ..+   .+.+           
T Consensus        14 ~~v~c~~~~l~~iP~~l--~~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~-----------   78 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL--PETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQI-SELAPDAFQG-----------   78 (220)
T ss_dssp             TEEECTTSCCSSCCSSC--CTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCC-CEECTTTTTT-----------
T ss_pred             CEEEcCCCCcCcCCCcc--CcCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcC-CCcCHHHhhC-----------
Confidence            577888887776 4333  26899999998887321 122356677788888877653 222   1222           


Q ss_pred             eccccceEEEeCCCccEEEecccc-ccc-eeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccch--h-H
Q 009796          240 TYQELESVEIAVPSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL--E-R  314 (525)
Q Consensus       240 c~~~l~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l--~-~  314 (525)
                                 +++|++|+++++. ... +..+..+++|+.|+|++|.+++. ....+.++++|+.|+|+++..-  . .
T Consensus        79 -----------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~  146 (220)
T 2v9t_B           79 -----------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL-RVDAFQDLHNLNLLSLYDNKLQTIAKG  146 (220)
T ss_dssp             -----------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             -----------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe-CHHHcCCCCCCCEEECCCCcCCEECHH
Confidence                       4556666666665 222 23468899999999999999874 3456788999999999987531  1 1


Q ss_pred             hhhcCcccceEcccc
Q 009796          315 IMISSNRLMHLEVYN  329 (525)
Q Consensus       315 ~~~~~~~L~~L~l~~  329 (525)
                      .....++|+.|++.+
T Consensus       147 ~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B          147 TFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             TTTTCTTCCEEECCS
T ss_pred             HHhCCCCCCEEEeCC
Confidence            122356788888877

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.75  E-value=9.8e-09  Score=94.85  Aligned_cols=128  Identities=13%  Similarity=0.063  Sum_probs=89.1

Q ss_pred             cCCeEEEEEeecCCCCcccC-C-ccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcC
Q 009796          134 NGVKELDFEVITDKNSVNAL-P-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV  209 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~l-p-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~  209 (525)
                      ..+++|+++.  +.  ...+ | ..+..+++|++|+|++|.+..  +..+.++++|++|+|++|.++.- ....+.++++
T Consensus        32 ~~~~~L~L~~--N~--l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~  106 (220)
T 2v70_A           32 QYTAELRLNN--NE--FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLES  106 (220)
T ss_dssp             TTCSEEECCS--SC--CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSS
T ss_pred             CCCCEEEcCC--Cc--CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcC
Confidence            3577888765  22  2233 2 335678999999999999987  44788999999999999998421 2344678999


Q ss_pred             ccEEEEeecCCCce--eecccCCCccEEEEeeeccccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCC
Q 009796          210 LEDLSFFYCFGLKR--LRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPH  285 (525)
Q Consensus       210 Le~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~  285 (525)
                      |++|+|++|.....  -.+.+                      +++|+.|+++++.  ...+..+..+++|+.|++++|.
T Consensus       107 L~~L~Ls~N~l~~~~~~~~~~----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          107 LKTLMLRSNRITCVGNDSFIG----------------------LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CCEEECTTSCCCCBCTTSSTT----------------------CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCEEECCCCcCCeECHhHcCC----------------------CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            99999999864221  11223                      3555555565555  2224567788889999998887


Q ss_pred             CCh
Q 009796          286 FND  288 (525)
Q Consensus       286 ~~~  288 (525)
                      ++.
T Consensus       165 l~c  167 (220)
T 2v70_A          165 FNC  167 (220)
T ss_dssp             EEC
T ss_pred             CcC
Confidence            764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.75  E-value=6.4e-09  Score=103.85  Aligned_cols=153  Identities=20%  Similarity=0.161  Sum_probs=100.4

Q ss_pred             cccCCccccCCCCccEEEecCCcCCC--CCCCC-CCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee-
Q 009796          150 VNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCA-NLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-  225 (525)
Q Consensus       150 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~-  225 (525)
                      ...+|..+.  +.++.|+|++|.+..  +..+. ++++|++|+|++|.++.- ....+.++++|++|+|++|.. ..+. 
T Consensus        30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l-~~~~~  105 (361)
T 2xot_A           30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHL-HTLDE  105 (361)
T ss_dssp             CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC-CEECT
T ss_pred             cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcC-CcCCH
Confidence            445666543  458899999998887  33444 899999999999987321 123467889999999998864 3332 


Q ss_pred             --cccCCCccEEEEeeeccccceEE----EeCCCccEEEecccc-ccceee-c---cCCCCccEEEeeCCCCChhhhhhh
Q 009796          226 --ISEAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSR-VPRLLD-V---AECPHLRKLVLFLPHFNDQEFHPL  294 (525)
Q Consensus       226 --i~~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~-~~~~~~-~---~~l~~L~~L~L~~~~~~~~~~~~l  294 (525)
                        +.++++|+.|++++|.  +..+.    ..+++|+.|+++++. ...+.. +   ..+++|+.|+|++|.++.- ....
T Consensus       106 ~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~  182 (361)
T 2xot_A          106 FLFSDLQALEVLLLYNNH--IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL-PLTD  182 (361)
T ss_dssp             TTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC-CHHH
T ss_pred             HHhCCCcCCCEEECCCCc--ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc-CHHH
Confidence              4467888888888875  33321    246788888888877 333322 2   5678888888888877752 2233


Q ss_pred             hcCCCC--CcEEEecCc
Q 009796          295 ISKFPL--LEDLSIISL  309 (525)
Q Consensus       295 l~~~~~--Le~L~L~~c  309 (525)
                      +..++.  |+.|+|.+.
T Consensus       183 ~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          183 LQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             HHHSCHHHHTTEECCSS
T ss_pred             hhhccHhhcceEEecCC
Confidence            445555  366777764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.74  E-value=2.2e-09  Score=95.46  Aligned_cols=132  Identities=17%  Similarity=0.129  Sum_probs=80.0

Q ss_pred             ccCCCCccEEEecCCcCCCCCCCCC-CCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEE
Q 009796          157 IFSAKLLTSLKLFGCKLEQPSHCAN-LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL  235 (525)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~~~~~~~-l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L  235 (525)
                      +..+.+|+.|++++|.+...+.+.. .++|++|+|++|.++.  + ..+..+++|++|++++|.. ..+..         
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l-~~~~~---------   81 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRI-CRIGE---------   81 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCC-CEECS---------
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcc-cccCc---------
Confidence            3457788888888887776222333 3478888888777642  1 2345566666666666542 11110         


Q ss_pred             EEeeeccccceEEEeCCCccEEEecccc-cccee--eccCCCCccEEEeeCCCCChhh--hhhhhcCCCCCcEEEecCcc
Q 009796          236 ILRFTYQELESVEIAVPSLQQLELSFSR-VPRLL--DVAECPHLRKLVLFLPHFNDQE--FHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       236 ~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~--~~~~l~~L~~L~L~~~~~~~~~--~~~ll~~~~~Le~L~L~~c~  310 (525)
                                .+...+++|++|++++|. ...+.  .++.+++|+.|++++|.++...  ....+..+++|+.|+++.+.
T Consensus        82 ----------~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           82 ----------GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             ----------CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             ----------chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence                      001135566666666665 22232  5677888888888888776421  11247788899999888765


Q ss_pred             c
Q 009796          311 T  311 (525)
Q Consensus       311 ~  311 (525)
                      .
T Consensus       152 ~  152 (176)
T 1a9n_A          152 L  152 (176)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.72  E-value=2.9e-09  Score=94.66  Aligned_cols=130  Identities=13%  Similarity=0.055  Sum_probs=82.6

Q ss_pred             CCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEE
Q 009796          178 HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQL  257 (525)
Q Consensus       178 ~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L  257 (525)
                      .+.++++|+.|++++|.++.  ++.+...+++|++|++++|....--.+                      ..+++|++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l----------------------~~l~~L~~L   69 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGF----------------------PLLRRLKTL   69 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCC----------------------CCCSSCCEE
T ss_pred             hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCccccc----------------------ccCCCCCEE
Confidence            34556777788887777642  223333344666666666542110011                      135677777


Q ss_pred             Eecccc-cccee-eccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccch--hH----hhhcCcccceEcccc
Q 009796          258 ELSFSR-VPRLL-DVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL--ER----IMISSNRLMHLEVYN  329 (525)
Q Consensus       258 ~l~~~~-~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l--~~----~~~~~~~L~~L~l~~  329 (525)
                      ++++|. ...+. .++.+++|+.|++++|.++.-.....+..+++|+.|+++++...  ..    +...+++|+.|+++.
T Consensus        70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             ECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             ECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence            777776 32332 34889999999999999976221236788999999999997632  11    233468899999887


Q ss_pred             cc
Q 009796          330 CS  331 (525)
Q Consensus       330 c~  331 (525)
                      +.
T Consensus       150 n~  151 (176)
T 1a9n_A          150 VK  151 (176)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.68  E-value=6.5e-10  Score=101.03  Aligned_cols=136  Identities=18%  Similarity=0.194  Sum_probs=83.3

Q ss_pred             cccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccC
Q 009796          150 VNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEA  229 (525)
Q Consensus       150 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l  229 (525)
                      ...+|..+..+++|++|++++|.+...+.+.++++|++|++++|.+.  .++..+..+++|++|++++|....--.+..+
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l  114 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKL  114 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccC
Confidence            34455567778888888888887776236677788888888888774  2444555667788888877743221122334


Q ss_pred             CCccEEEEeeeccccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChh---------hhhhhhcCCCC
Q 009796          230 HKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQ---------EFHPLISKFPL  300 (525)
Q Consensus       230 ~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~---------~~~~ll~~~~~  300 (525)
                      ++|+.|++++|.  +..+                 +....+..+++|+.|++++|.+++.         .....+..+++
T Consensus       115 ~~L~~L~l~~N~--i~~~-----------------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~  175 (198)
T 1ds9_A          115 VNLRVLYMSNNK--ITNW-----------------GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN  175 (198)
T ss_dssp             HHSSEEEESEEE--CCCH-----------------HHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSS
T ss_pred             CCCCEEECCCCc--CCch-----------------hHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCC
Confidence            555555555553  1000                 0112456677777777777766443         12234677888


Q ss_pred             CcEEEe
Q 009796          301 LEDLSI  306 (525)
Q Consensus       301 Le~L~L  306 (525)
                      |+.|+-
T Consensus       176 L~~Ld~  181 (198)
T 1ds9_A          176 LKKLDG  181 (198)
T ss_dssp             CSEECC
T ss_pred             cEEECC
Confidence            888873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.65  E-value=3.8e-09  Score=105.73  Aligned_cols=60  Identities=18%  Similarity=0.096  Sum_probs=33.5

Q ss_pred             CCCccEEEecccc-c-----cceeeccCCCCccEEEeeCCCCChhhh---hhhhcCCCCCcEEEecCcc
Q 009796          251 VPSLQQLELSFSR-V-----PRLLDVAECPHLRKLVLFLPHFNDQEF---HPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       251 ~~~L~~L~l~~~~-~-----~~~~~~~~l~~L~~L~L~~~~~~~~~~---~~ll~~~~~Le~L~L~~c~  310 (525)
                      .++|++|++++|. .     .....+...++|+.|+|++|.+++...   ...+...++|++|+|+++.
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            4556666665555 1     112234555667777777777766432   2334455667777776654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.63  E-value=9.4e-10  Score=116.32  Aligned_cols=186  Identities=16%  Similarity=0.107  Sum_probs=121.8

Q ss_pred             cCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeee------------chHHHHHHHhCCcCccEEE-EeecCC--C
Q 009796          158 FSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYV------------NDQMVQSLVRECRVLEDLS-FFYCFG--L  221 (525)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~------------~~~~l~~ll~~c~~Le~L~-L~~c~~--l  221 (525)
                      ..+++|+.|+|++|.+.. |..+++|++|+.|+++++..            ....++..++.+++|+.|+ ++.+..  +
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            467899999999998877 78888899999999876641            1123445667777888877 443311  1


Q ss_pred             cee-----eccc--CCCccEEEEeeec-cccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhh
Q 009796          222 KRL-----RISE--AHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFH  292 (525)
Q Consensus       222 ~~l-----~i~~--l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~  292 (525)
                      ..+     .+..  ...|+.|++++|. ..++. ...+++|+.|++++|. ...|..++.+++|+.|+|++|.+++  ++
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence            110     0111  1367888888876 33433 2357788888888887 5556678888888888888888876  44


Q ss_pred             hhhcCCCCCcEEEecCccc--h--hHhhhcCcccceEcccccc------chhhhcccCCCcceEE
Q 009796          293 PLISKFPLLEDLSIISLET--L--ERIMISSNRLMHLEVYNCS------GLNRINVDAPNLVSFD  347 (525)
Q Consensus       293 ~ll~~~~~Le~L~L~~c~~--l--~~~~~~~~~L~~L~l~~c~------~L~~l~~~~p~L~~l~  347 (525)
                       .+.++++|+.|+|+++..  +  ......+++|+.|++++.+      ....+....|+|+.|+
T Consensus       503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence             567888888888887643  2  1222235778888887743      1122223467777764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.60  E-value=1.3e-08  Score=101.54  Aligned_cols=150  Identities=19%  Similarity=0.152  Sum_probs=108.4

Q ss_pred             cCCeEEEEEeecCCCCcccCCcccc--CCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcC
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIF--SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV  209 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~  209 (525)
                      ..++.|+|+.    .....++...+  .+++|++|+|++|.+..  +..+.++++|++|+|++|.+..- ....+.++++
T Consensus        39 ~~l~~L~Ls~----N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~  113 (361)
T 2xot_A           39 SYTALLDLSH----NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQA  113 (361)
T ss_dssp             TTCSEEECCS----SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTT
T ss_pred             CCCCEEECCC----CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcC
Confidence            3578888765    22334544443  78999999999999987  45688999999999999988421 2334678999


Q ss_pred             ccEEEEeecCCCce--eecccCCCccEEEEeeec-cccceEE----EeCCCccEEEecccc-ccc-eeeccCCCC--ccE
Q 009796          210 LEDLSFFYCFGLKR--LRISEAHKLKSLILRFTY-QELESVE----IAVPSLQQLELSFSR-VPR-LLDVAECPH--LRK  278 (525)
Q Consensus       210 Le~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c~-~~l~~~~----~~~~~L~~L~l~~~~-~~~-~~~~~~l~~--L~~  278 (525)
                      |++|+|++|.....  -.+.++++|+.|++++|. ..+..-.    ..+++|+.|+++++. ... ...+..++.  ++.
T Consensus       114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~  193 (361)
T 2xot_A          114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG  193 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTT
T ss_pred             CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcce
Confidence            99999999875322  235578999999999996 3322211    358999999999998 222 235666776  488


Q ss_pred             EEeeCCCCCh
Q 009796          279 LVLFLPHFND  288 (525)
Q Consensus       279 L~L~~~~~~~  288 (525)
                      |+|.+|.+.-
T Consensus       194 l~l~~N~~~C  203 (361)
T 2xot_A          194 LYLHNNPLEC  203 (361)
T ss_dssp             EECCSSCEEC
T ss_pred             EEecCCCccC
Confidence            9999988764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.55  E-value=7.8e-08  Score=84.28  Aligned_cols=91  Identities=16%  Similarity=0.207  Sum_probs=70.7

Q ss_pred             ccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceee-echHHHHHHHhC---CcCccEEEEeecCCCcee
Q 009796          151 NALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVY-VNDQMVQSLVRE---CRVLEDLSFFYCFGLKRL  224 (525)
Q Consensus       151 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~---c~~Le~L~L~~c~~l~~l  224 (525)
                      ..+|......-.|++|++++|.++.  ...+.+|++|++|+|++|. +++..+..+...   |++|++|+|++|..++.-
T Consensus        51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            4566544445679999999998776  4455789999999999996 588888887653   789999999999887653


Q ss_pred             e---cccCCCccEEEEeeec
Q 009796          225 R---ISEAHKLKSLILRFTY  241 (525)
Q Consensus       225 ~---i~~l~~L~~L~l~~c~  241 (525)
                      .   +..+++|++|++++|.
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCT
T ss_pred             HHHHHhcCCCCCEEECCCCC
Confidence            2   3457888888888776

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.52  E-value=4.9e-08  Score=88.05  Aligned_cols=65  Identities=20%  Similarity=0.167  Sum_probs=31.3

Q ss_pred             ccCCccccCCCCccEEEecCCcCCC-CC--CCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeec
Q 009796          151 NALPQTIFSAKLLTSLKLFGCKLEQ-PS--HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYC  218 (525)
Q Consensus       151 ~~lp~~l~~~~~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c  218 (525)
                      ..+|..+..  +|++|++++|.+.. +.  .+..+++|++|+|++|.++.- .+..+.++++|++|+|++|
T Consensus        21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSC
T ss_pred             CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCC
Confidence            344443332  56666666665554 22  245566666666666555211 1222344455555555444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.47  E-value=2.3e-08  Score=90.64  Aligned_cols=109  Identities=17%  Similarity=0.189  Sum_probs=67.4

Q ss_pred             CCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEE
Q 009796          178 HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQL  257 (525)
Q Consensus       178 ~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L  257 (525)
                      .+..+++|++|+|++|.+..  ++ .+..+++|++|++++|..                     ..++.....+++|++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l---------------------~~l~~~~~~~~~L~~L   98 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLI---------------------KKIENLDAVADTLEEL   98 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEE---------------------CSCSSHHHHHHHCSEE
T ss_pred             HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCc---------------------ccccchhhcCCcCCEE
Confidence            45566677777777776632  22 344556666666666532                     1111111123556666


Q ss_pred             Eecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc
Q 009796          258 ELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET  311 (525)
Q Consensus       258 ~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~  311 (525)
                      ++++|. ...+ .++.+++|+.|+++++.+++-.....+..+++|++|+++++..
T Consensus        99 ~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           99 WISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             ECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            666555 2222 5677889999999999988732334678899999999998753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.45  E-value=4.7e-07  Score=89.81  Aligned_cols=204  Identities=18%  Similarity=0.143  Sum_probs=107.1

Q ss_pred             HHHHHHHHHhhccccCCcccceEEEEEeeccccCCchhHHHHHHHH-HHcCCeEEEEEeecCCC------CcccCCcccc
Q 009796           86 KFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELA-MENGVKELDFEVITDKN------SVNALPQTIF  158 (525)
Q Consensus        86 ~~~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wl~~~-~~~~l~~L~l~~~~~~~------~~~~lp~~l~  158 (525)
                      .+.+.+.++|..  .....|+.+.+..-..+.......+..++..+ ..++|+.|.+.......      ....+...+.
T Consensus        92 ~~~~~~~~fl~~--~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~  169 (362)
T 2ra8_A           92 EGVNLMDKILKD--KKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD  169 (362)
T ss_dssp             TTCCHHHHHHHC--TTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH
T ss_pred             cHHHHHHHHhcC--CCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHh
Confidence            344555566621  22345777776632211001112333443322 23589999875411000      0113444455


Q ss_pred             CCCCccEEEecCCc-CCCCCCCCCCCcccEEEeceeeechHHHHHHHh-CCcCccEEEEeecCC-------Ccee----e
Q 009796          159 SAKLLTSLKLFGCK-LEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVR-ECRVLEDLSFFYCFG-------LKRL----R  225 (525)
Q Consensus       159 ~~~~L~~L~L~~~~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~-~c~~Le~L~L~~c~~-------l~~l----~  225 (525)
                      .+++|+.|.|++|. +..+.  ..+++|++|+|..+.++...+..+.. .+|+|++|+|..+..       +..+    .
T Consensus       170 ~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             TCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             cCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            67899999998873 32222  24889999999988887766766653 689999999864211       1110    1


Q ss_pred             cccCCCccEEEEeeeccccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhh---cCCCCCc
Q 009796          226 ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLI---SKFPLLE  302 (525)
Q Consensus       226 i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll---~~~~~Le  302 (525)
                      ...+|+|+.|++.+|.  +....               .......+.+++|+.|+|+.+.+++.....+.   .++++|+
T Consensus       248 ~~~~p~Lr~L~L~~~~--i~~~~---------------~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~  310 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAE--EQNVV---------------VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK  310 (362)
T ss_dssp             TTTCTTCCEEEEESCT--THHHH---------------HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred             cCCCCCcCEEeCCCCC--CchHH---------------HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence            1124455555554443  00000               00000113456777777777777665433332   4467777


Q ss_pred             EEEecCcc
Q 009796          303 DLSIISLE  310 (525)
Q Consensus       303 ~L~L~~c~  310 (525)
                      .|+|+.|.
T Consensus       311 ~L~L~~n~  318 (362)
T 2ra8_A          311 FINMKYNY  318 (362)
T ss_dssp             EEECCSBB
T ss_pred             EEECCCCc
Confidence            77777664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.44  E-value=1.6e-07  Score=99.20  Aligned_cols=117  Identities=16%  Similarity=0.159  Sum_probs=59.5

Q ss_pred             cccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee--ecccCCCccEEEEeeec-cccceEEEeCCCccEEEec
Q 009796          184 SLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELS  260 (525)
Q Consensus       184 ~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l--~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~  260 (525)
                      .|+.|+|++|.++.  ++. +..+++|++|+|++|... .+  .+.++++|+.|++++|. ..++ ....+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence            46667777766632  333 566667777777666432 22  23344555555555553 1222 01134555555555


Q ss_pred             ccc-ccc--eeeccCCCCccEEEeeCCCCChh--hhhhhhcCCCCCcEEE
Q 009796          261 FSR-VPR--LLDVAECPHLRKLVLFLPHFNDQ--EFHPLISKFPLLEDLS  305 (525)
Q Consensus       261 ~~~-~~~--~~~~~~l~~L~~L~L~~~~~~~~--~~~~ll~~~~~Le~L~  305 (525)
                      +|. ...  +..++.+++|+.|+|++|.+++.  ....+...+|+|+.|+
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            555 222  44556666666666666655542  1223334455565554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.43  E-value=2.8e-07  Score=91.46  Aligned_cols=130  Identities=17%  Similarity=0.147  Sum_probs=82.4

Q ss_pred             HHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeec---cccceEE-EeCCCccEEEecccc----cc--c--
Q 009796          199 MVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY---QELESVE-IAVPSLQQLELSFSR----VP--R--  266 (525)
Q Consensus       199 ~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~---~~l~~~~-~~~~~L~~L~l~~~~----~~--~--  266 (525)
                      .+..++..+|+|++|.|.+|.++.-..+. +++|++|++..|.   ..+..+. ..+|+|++|+++.+.    ..  .  
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            46788899999999999988543322233 6899999998775   1122222 258999999986321    00  0  


Q ss_pred             ---eeeccCCCCccEEEeeCCCCChhhhhhhh--cCCCCCcEEEecCccchhHh-----h---hcCcccceEccccc
Q 009796          267 ---LLDVAECPHLRKLVLFLPHFNDQEFHPLI--SKFPLLEDLSIISLETLERI-----M---ISSNRLMHLEVYNC  330 (525)
Q Consensus       267 ---~~~~~~l~~L~~L~L~~~~~~~~~~~~ll--~~~~~Le~L~L~~c~~l~~~-----~---~~~~~L~~L~l~~c  330 (525)
                         ....+.+|+|+.|.|..+.+++.....+.  ..+|+|++|+|+.+. ++..     .   ..+++|+.|+++.|
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC
Confidence               11123578999999988888765333333  357889999997653 3331     1   12355666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.38  E-value=2.8e-07  Score=83.11  Aligned_cols=121  Identities=17%  Similarity=0.082  Sum_probs=57.7

Q ss_pred             cEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce--eecccCCCccEEEEeee
Q 009796          164 TSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR--LRISEAHKLKSLILRFT  240 (525)
Q Consensus       164 ~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c  240 (525)
                      +.++++++.+.. |...  .++|++|+|++|.++.  ++..+.++++|++|+|++|.....  -.+.++++|+.|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            455555555554 3222  2456666666665531  223345566666666665542111  11223344444444433


Q ss_pred             ccccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCc
Q 009796          241 YQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL  309 (525)
Q Consensus       241 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c  309 (525)
                      .  +.                  ...+..+..+++|+.|+|++|.++.- ....+..+++|+.|++++.
T Consensus        89 ~--l~------------------~i~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           89 R--LR------------------CIPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             C--CC------------------BCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCSS
T ss_pred             c--cC------------------EeCHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCCC
Confidence            2  11                  11122355566666666666665542 2234555666666666653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.37  E-value=2e-08  Score=100.50  Aligned_cols=163  Identities=15%  Similarity=0.175  Sum_probs=105.7

Q ss_pred             HHHHcCCeEEEEEeecCCCCc---ccCCcccc-CCCCccEEEecCCcCCC---CCCCCCCCcccEEEeceeeechHHHHH
Q 009796          130 LAMENGVKELDFEVITDKNSV---NALPQTIF-SAKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQS  202 (525)
Q Consensus       130 ~~~~~~l~~L~l~~~~~~~~~---~~lp~~l~-~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~  202 (525)
                      ..+...++.|++..  +....   ..+...+. .+++|++|+|++|.+..   ......+++|++|+|++|.+++.....
T Consensus        68 ~~~~~~L~~L~Ls~--n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~  145 (372)
T 3un9_A           68 AEVLSSLRQLNLAG--VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD  145 (372)
T ss_dssp             HHHHTTCCEEECTT--SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred             HHHHhhCCEEEecC--CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence            34456788888765  21111   11222222 23689999999998865   233345778999999999886555444


Q ss_pred             H---H-hCCcCccEEEEeecCCCc----ee--ecccCCCccEEEEeeec---cccceE---EEeCCCccEEEecccc-c-
Q 009796          203 L---V-RECRVLEDLSFFYCFGLK----RL--RISEAHKLKSLILRFTY---QELESV---EIAVPSLQQLELSFSR-V-  264 (525)
Q Consensus       203 l---l-~~c~~Le~L~L~~c~~l~----~l--~i~~l~~L~~L~l~~c~---~~l~~~---~~~~~~L~~L~l~~~~-~-  264 (525)
                      +   + ..++.|++|+|++|..-.    .+  .+..+++|++|++++|.   .+...+   ....++|++|++++|. . 
T Consensus       146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            3   3 357889999999986421    11  12346889999999886   111111   1246789999999998 1 


Q ss_pred             ----cceeeccCCCCccEEEeeCCCCChhhhhhh
Q 009796          265 ----PRLLDVAECPHLRKLVLFLPHFNDQEFHPL  294 (525)
Q Consensus       265 ----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l  294 (525)
                          .....+...++|+.|+|++|.+++.....+
T Consensus       226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          226 TAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence                122335567999999999999998755543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.35  E-value=1.5e-07  Score=102.57  Aligned_cols=109  Identities=11%  Similarity=0.007  Sum_probs=55.2

Q ss_pred             ccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEE
Q 009796          157 IFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL  235 (525)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L  235 (525)
                      +..+++|+.|+|++|.+.. +.....+++|++|+|++|.++  .++..+.++++|++|+|++|... .            
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~------------  284 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-S------------  284 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-S------------
T ss_pred             hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-c------------
Confidence            3344555555555554444 333344555555555555443  12223344445555555444321 1            


Q ss_pred             EEeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCCh
Q 009796          236 ILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND  288 (525)
Q Consensus       236 ~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~  288 (525)
                              ++.....+++|++|++++|. ...+..++.+++|+.|+|++|.+++
T Consensus       285 --------lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          285 --------LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             --------CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             --------cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence                    11111235666666666665 4445557777777777777777765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.32  E-value=5.6e-07  Score=78.85  Aligned_cols=64  Identities=19%  Similarity=0.146  Sum_probs=36.1

Q ss_pred             ccCCCCccEEEeeCCC-CChhhhhhhhcC---CCCCcEEEecCccchhHhhh----cCcccceEccccccch
Q 009796          270 VAECPHLRKLVLFLPH-FNDQEFHPLISK---FPLLEDLSIISLETLERIMI----SSNRLMHLEVYNCSGL  333 (525)
Q Consensus       270 ~~~l~~L~~L~L~~~~-~~~~~~~~ll~~---~~~Le~L~L~~c~~l~~~~~----~~~~L~~L~l~~c~~L  333 (525)
                      +.+|++|+.|+|+++. +++..+..+...   +++|++|+|++|..+++.++    .+++|++|++++|+.+
T Consensus        81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~I  152 (176)
T 3e4g_A           81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV  152 (176)
T ss_dssp             GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTC
T ss_pred             hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCC
Confidence            4556666666666653 666555554432   34666666666665554332    2456666666666544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.32  E-value=4.7e-07  Score=80.27  Aligned_cols=35  Identities=31%  Similarity=0.308  Sum_probs=18.1

Q ss_pred             CCccEEEecCCcCCC--CCCCCCCCcccEEEeceeee
Q 009796          161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV  195 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~  195 (525)
                      ++|++|++++|.+..  +..+..+++|++|+|++|.+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l   64 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI   64 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc
Confidence            455555555555544  22234555555555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.29  E-value=8e-07  Score=87.26  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=22.0

Q ss_pred             CCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecC
Q 009796          182 LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF  219 (525)
Q Consensus       182 l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~  219 (525)
                      |++|+.|+|.. .+.. .-...+.+|++|++|++.++.
T Consensus       100 ~~~L~~l~L~~-~i~~-I~~~aF~~~~~L~~l~l~~n~  135 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKN-IEDAAFKGCDNLKICQIRKKT  135 (329)
T ss_dssp             CTTCCC-CBCT-TCCE-ECTTTTTTCTTCCEEEBCCSS
T ss_pred             cCCCcEEECCc-cccc-hhHHHhhcCcccceEEcCCCC
Confidence            78888888876 3310 001235678888888887764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.28  E-value=6.5e-07  Score=80.58  Aligned_cols=122  Identities=16%  Similarity=0.093  Sum_probs=92.2

Q ss_pred             cEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce--eecccCCCccEEEEeee
Q 009796          164 TSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR--LRISEAHKLKSLILRFT  240 (525)
Q Consensus       164 ~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~--l~i~~l~~L~~L~l~~c  240 (525)
                      ++++++++.+.. |...  .++|++|+|++|.++.-.....+..+++|++|+|++|.....  -.+.++++|+.|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            789999998876 4433  348999999999884322122467899999999999864332  23557899999999999


Q ss_pred             ccccceEE---E-eCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChh
Q 009796          241 YQELESVE---I-AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQ  289 (525)
Q Consensus       241 ~~~l~~~~---~-~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~  289 (525)
                      .  +..+.   + .+++|++|+++++.  ...+..++.+++|+.|++++|.++.+
T Consensus        89 ~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           89 K--IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             C--CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             c--CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            6  33332   2 57999999999998  33456788999999999999988754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.24  E-value=3.8e-07  Score=99.40  Aligned_cols=60  Identities=17%  Similarity=0.200  Sum_probs=50.1

Q ss_pred             eCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccc
Q 009796          250 AVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET  311 (525)
Q Consensus       250 ~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~  311 (525)
                      .+++|+.|++++|. ...+..++.+++|+.|+|++|.++.  ++..+.++++|+.|+|+++..
T Consensus       268 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          268 NLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             GGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCC
T ss_pred             CCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCcc
Confidence            56788888888887 5567788999999999999999874  555588999999999998754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.24  E-value=9.5e-07  Score=86.72  Aligned_cols=143  Identities=13%  Similarity=0.045  Sum_probs=91.8

Q ss_pred             CCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEee-----------------cCC
Q 009796          160 AKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFY-----------------CFG  220 (525)
Q Consensus       160 ~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~-----------------c~~  220 (525)
                      |++|+.|.|.. .+..  ...+.+|++|+.|++..+.+.. .-...+.+|.++.++.+..                 |..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            89999999998 6655  5668889999999998885410 0011233455454443222                 211


Q ss_pred             Cc--------------------------eeecc-------------cCCCccEEEEeeeccccceEE---E-eCCCccEE
Q 009796          221 LK--------------------------RLRIS-------------EAHKLKSLILRFTYQELESVE---I-AVPSLQQL  257 (525)
Q Consensus       221 l~--------------------------~l~i~-------------~l~~L~~L~l~~c~~~l~~~~---~-~~~~L~~L  257 (525)
                      +.                          .+.+.             .|++|+.|++.++.  +..+.   + +|++|+++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~--i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN--ATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC--CCEECTTTTTTCTTCCEE
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC--cceecHhhhhCCCCCCEE
Confidence            11                          00000             27899999998773  44442   2 68899999


Q ss_pred             Eecccc-ccceeeccCCCCcc-EEEeeCCCCChhhhhhhhcCCCCCcEEEecC
Q 009796          258 ELSFSR-VPRLLDVAECPHLR-KLVLFLPHFNDQEFHPLISKFPLLEDLSIIS  308 (525)
Q Consensus       258 ~l~~~~-~~~~~~~~~l~~L~-~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~  308 (525)
                      ++..+- .-....|.+|++|+ .+.+.. .++.- -...+.+|++|+.|++..
T Consensus       256 ~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I-~~~aF~~c~~L~~l~l~~  306 (329)
T 3sb4_A          256 KLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAI-EFGAFMGCDNLRYVLATG  306 (329)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEE-CTTTTTTCTTEEEEEECS
T ss_pred             ECCcccceehHHHhhCChhccEEEEEcc-cceEE-chhhhhCCccCCEEEeCC
Confidence            998865 22334688899999 999976 44431 245678899999999865

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.23  E-value=1.2e-06  Score=77.53  Aligned_cols=123  Identities=18%  Similarity=0.127  Sum_probs=87.9

Q ss_pred             ccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee---cccCCCccEEEEe
Q 009796          163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKLKSLILR  238 (525)
Q Consensus       163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~---i~~l~~L~~L~l~  238 (525)
                      .+.++++++.+.. |.  ...++|++|++++|.+.. .....+..+++|++|++++|.. ..+.   +..+++|+.|+++
T Consensus         9 ~~~l~~~~~~l~~~p~--~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT--GIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSSCCT--TCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCccCCC--CCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECC
Confidence            5678888887776 32  234789999999998742 1233467889999999998854 3332   3567899999999


Q ss_pred             eec-cccceEE-EeCCCccEEEecccc-ccce-eeccCCCCccEEEeeCCCCChh
Q 009796          239 FTY-QELESVE-IAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFLPHFNDQ  289 (525)
Q Consensus       239 ~c~-~~l~~~~-~~~~~L~~L~l~~~~-~~~~-~~~~~l~~L~~L~L~~~~~~~~  289 (525)
                      +|. ..+..-. ..+++|++|+++++. ...+ ..+..+++|+.|++++|.++..
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            886 2222211 257899999999988 3333 3367899999999999988763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.21  E-value=9.2e-07  Score=79.66  Aligned_cols=116  Identities=17%  Similarity=0.143  Sum_probs=77.3

Q ss_pred             CcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--
Q 009796          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--  225 (525)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~--  225 (525)
                      ....+|..+.  ++|++|+|++|.+.. +..+.++++|++|+|++|.++.- ....+.++++|++|+|++|.. ..+.  
T Consensus        21 ~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l-~~i~~~   96 (193)
T 2wfh_A           21 GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRL-RCIPPR   96 (193)
T ss_dssp             CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CBCCTT
T ss_pred             CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCcc-CEeCHH
Confidence            3446666553  589999999998887 67788899999999999988421 223467889999999998864 2222  


Q ss_pred             -cccCCCccEEEEeeeccccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCCh
Q 009796          226 -ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFND  288 (525)
Q Consensus       226 -i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~  288 (525)
                       +.++++|+.|++++|.  +.                  ...+..+..+++|+.|++++|.+..
T Consensus        97 ~f~~l~~L~~L~L~~N~--l~------------------~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           97 TFDGLKSLRLLSLHGND--IS------------------VVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             TTTTCTTCCEEECCSSC--CC------------------BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             HhCCCCCCCEEECCCCC--CC------------------eeChhhhhcCccccEEEeCCCCeec
Confidence             3344555555555442  11                  1111246677888888888777643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.14  E-value=6.1e-06  Score=83.18  Aligned_cols=142  Identities=15%  Similarity=0.166  Sum_probs=71.1

Q ss_pred             CccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee---ecccCCCccEEE
Q 009796          162 LLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL---RISEAHKLKSLI  236 (525)
Q Consensus       162 ~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l---~i~~l~~L~~L~  236 (525)
                      +|+.+.+.. .+..  ...+.+|++|+.++|..+.+..  +..-.-.|.+|+++.|..+  +..+   ...+|++|+.+.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~--I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~  232 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK--LPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIE  232 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE--ECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEE
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE--echhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEe
Confidence            466666654 2222  3445666667777666554411  0000112566666666532  2322   233566777776


Q ss_pred             EeeeccccceEEEeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCCh----hhhhhhhcCCCCCcEEEecC
Q 009796          237 LRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND----QEFHPLISKFPLLEDLSIIS  308 (525)
Q Consensus       237 l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~----~~~~~ll~~~~~Le~L~L~~  308 (525)
                      +..+...+..-.+...+|+.+.+...- .-....|.+|++|+.+.+..+.+..    ......+.+|++|+.+.|..
T Consensus       233 l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~  309 (401)
T 4fdw_A          233 IPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE  309 (401)
T ss_dssp             CCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred             cCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence            654221111111222566777664433 1123356677777777776655431    11234466777777777753

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.95  E-value=4.1e-06  Score=79.41  Aligned_cols=36  Identities=14%  Similarity=0.520  Sum_probs=34.1

Q ss_pred             ccCCCCCHHHHHHHhcCCChHHHH-HHhhhchhhhhh
Q 009796            8 DHISDLPTFIIHHIMSFLSPKDVV-RTGILSTTWRKF   43 (525)
Q Consensus         8 D~is~LPd~iL~~Ils~L~~~d~~-r~s~vSrrWr~l   43 (525)
                      ..+..||||+|.+||++||.++++ |+++|||+|+.+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            468899999999999999999999 999999999986

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.95  E-value=2e-06  Score=80.49  Aligned_cols=35  Identities=31%  Similarity=0.573  Sum_probs=32.7

Q ss_pred             cCCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhh
Q 009796            9 HISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF   43 (525)
Q Consensus         9 ~is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~l   43 (525)
                      -|++||+||+.+||+||+.+|+++++.|||+||.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999964

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.92  E-value=7.8e-06  Score=72.14  Aligned_cols=67  Identities=15%  Similarity=0.156  Sum_probs=42.7

Q ss_pred             cccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecC
Q 009796          150 VNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF  219 (525)
Q Consensus       150 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~  219 (525)
                      ...+|..+.  ++|++|+|++|.+..  +..+.++++|++|+|++|.++.- ....+.++++|++|+|++|.
T Consensus        24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCc
Confidence            345565543  677788888777766  44566777778888777776321 12234566777777777664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.90  E-value=1.2e-05  Score=70.60  Aligned_cols=87  Identities=18%  Similarity=0.226  Sum_probs=50.8

Q ss_pred             cccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee--
Q 009796          150 VNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--  225 (525)
Q Consensus       150 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~--  225 (525)
                      ...+|..+.  ++|++|+|++|.+..  +..+.++++|++|+|++|.++. .....+.++++|++|+|++|.. ..+.  
T Consensus        21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l-~~~~~~   96 (170)
T 3g39_A           21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQL-KSIPRG   96 (170)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC-CCCCTT
T ss_pred             cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCcc-CEeCHH
Confidence            344565543  677788888877776  4456777788888888777632 1123345677777777777643 2221  


Q ss_pred             -cccCCCccEEEEeee
Q 009796          226 -ISEAHKLKSLILRFT  240 (525)
Q Consensus       226 -i~~l~~L~~L~l~~c  240 (525)
                       +..+++|+.|++++|
T Consensus        97 ~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           97 AFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TTTTCTTCCEEECCSS
T ss_pred             HhcCCCCCCEEEeCCC
Confidence             223444555544444

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.66  E-value=1.3e-05  Score=82.20  Aligned_cols=41  Identities=27%  Similarity=0.454  Sum_probs=37.4

Q ss_pred             CCCCccCCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhhh
Q 009796            4 TVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQ   44 (525)
Q Consensus         4 ~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw   44 (525)
                      .-..|.|+.||+|++.+||+||+.+|+++++.|||+|+++-
T Consensus         9 ~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~   49 (464)
T 3v7d_B            9 NLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   49 (464)
T ss_dssp             CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred             ccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.66  E-value=1.7e-05  Score=70.65  Aligned_cols=115  Identities=10%  Similarity=0.063  Sum_probs=63.2

Q ss_pred             CCCCcccEEEecee-eechHHH---HHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCcc
Q 009796          180 ANLQSLKKLSLDEV-YVNDQMV---QSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQ  255 (525)
Q Consensus       180 ~~l~~L~~L~L~~~-~~~~~~l---~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~  255 (525)
                      ...++|++|+|++| .+++...   ...+..++.|++|+|++|..-.. ...               .+.......++|+
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~-g~~---------------~l~~~L~~n~~L~   96 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP-VAF---------------ALAEMLKVNNTLK   96 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH-HHH---------------HHHHHHHHCSSCC
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH-HHH---------------HHHHHHHhCCCcC
Confidence            44667777777777 6644433   33345566666666666643110 000               0000001234555


Q ss_pred             EEEecccc-c-----cceeeccCCCCccEEEe--eCCCCChhh---hhhhhcCCCCCcEEEecCcc
Q 009796          256 QLELSFSR-V-----PRLLDVAECPHLRKLVL--FLPHFNDQE---FHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       256 ~L~l~~~~-~-----~~~~~~~~l~~L~~L~L--~~~~~~~~~---~~~ll~~~~~Le~L~L~~c~  310 (525)
                      +|++++|. .     .....+...++|+.|+|  +++.+++..   +...+...+.|++|+|+++.
T Consensus        97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           97 SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            55555554 1     12234556677888888  778887754   34455666788888887764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.64  E-value=7.8e-05  Score=75.03  Aligned_cols=141  Identities=12%  Similarity=0.122  Sum_probs=99.5

Q ss_pred             cccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeee--chHHHHHHHhCCcCccEEEEeecCCCceee---cccC
Q 009796          156 TIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYV--NDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEA  229 (525)
Q Consensus       156 ~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~--~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~---i~~l  229 (525)
                      .+..|.+|+.+++..+.+.. +.....+.+|+.+.|..+-.  ..    ..+.+|++|+++.+..+  +..+.   ..+ 
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-  247 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLKTIEIPEN--VSTIGQEAFRE-  247 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCCCEECCTT--CCEECTTTTTT-
T ss_pred             HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCCEEecCCC--ccCcccccccc-
Confidence            34578999999999988776 44444479999999975421  22    34678999999999764  33333   334 


Q ss_pred             CCccEEEEeeeccccceEE----EeCCCccEEEecccc-c------cceeeccCCCCccEEEeeCCCCChhhhhhhhcCC
Q 009796          230 HKLKSLILRFTYQELESVE----IAVPSLQQLELSFSR-V------PRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKF  298 (525)
Q Consensus       230 ~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~-~------~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~  298 (525)
                      .+|+.+.+..   .+..+.    .+|++|+.+.+.++. .      -....|.+|++|+.+.|.. .++.- -...+.+|
T Consensus       248 ~~L~~i~lp~---~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I-~~~aF~~c  322 (401)
T 4fdw_A          248 SGITTVKLPN---GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRIL-GQGLLGGN  322 (401)
T ss_dssp             CCCSEEEEET---TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEE-CTTTTTTC
T ss_pred             CCccEEEeCC---CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEE-hhhhhcCC
Confidence            6899999854   344442    268999999998765 2      2334688999999999974 34331 24457889


Q ss_pred             CCCcEEEecC
Q 009796          299 PLLEDLSIIS  308 (525)
Q Consensus       299 ~~Le~L~L~~  308 (525)
                      ++|+.+.|..
T Consensus       323 ~~L~~l~lp~  332 (401)
T 4fdw_A          323 RKVTQLTIPA  332 (401)
T ss_dssp             CSCCEEEECT
T ss_pred             CCccEEEECc
Confidence            9999999854

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.52  E-value=2.3e-05  Score=69.80  Aligned_cols=62  Identities=16%  Similarity=0.151  Sum_probs=41.6

Q ss_pred             CCCCccEEEecCC-cCCC------CCCCCCCCcccEEEeceeeechHH---HHHHHhCCcCccEEEEeecCC
Q 009796          159 SAKLLTSLKLFGC-KLEQ------PSHCANLQSLKKLSLDEVYVNDQM---VQSLVRECRVLEDLSFFYCFG  220 (525)
Q Consensus       159 ~~~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~L~~~~~~~~~---l~~ll~~c~~Le~L~L~~c~~  220 (525)
                      .+++|++|+|++| .+..      .......++|++|+|++|.+++..   +...+..++.|++|+|++|..
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            4567778888777 6654      223345678888888888885544   344456677888888887753

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.51  E-value=8.2e-05  Score=65.19  Aligned_cols=58  Identities=12%  Similarity=0.103  Sum_probs=31.9

Q ss_pred             CCCccEEEecccc-cc-ceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCc
Q 009796          251 VPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL  309 (525)
Q Consensus       251 ~~~L~~L~l~~~~-~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c  309 (525)
                      +++|++|+++++. .. .+..+..+++|+.|+|++|.++.- ....+.++++|+.|+|++.
T Consensus        53 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             cccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCEEEeCCC
Confidence            3445555555544 11 122345666777777776666642 2334566677777777664

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.51  E-value=2.9e-05  Score=78.94  Aligned_cols=42  Identities=24%  Similarity=0.521  Sum_probs=38.1

Q ss_pred             CCCCCCccCCCCCHH----HHHHHhcCCChHHHHHHhhhchhhhhh
Q 009796            2 DETVDADHISDLPTF----IIHHIMSFLSPKDVVRTGILSTTWRKF   43 (525)
Q Consensus         2 ~~~~~~D~is~LPd~----iL~~Ils~L~~~d~~r~s~vSrrWr~l   43 (525)
                      ++....|.|+.||+|    |+.+||+||+.++++++++|||+|+++
T Consensus         3 ~~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A            3 AIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             CCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             ChhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            445578999999999    999999999999999999999999954

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.51  E-value=4.8e-05  Score=77.47  Aligned_cols=41  Identities=32%  Similarity=0.545  Sum_probs=37.4

Q ss_pred             CCCCCccCCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhh
Q 009796            3 ETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF   43 (525)
Q Consensus         3 ~~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~l   43 (525)
                      +....|.|+.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus        12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            34467999999999999999999999999999999999964

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.48  E-value=7.5e-05  Score=65.72  Aligned_cols=82  Identities=17%  Similarity=0.210  Sum_probs=62.1

Q ss_pred             cCCeEEEEEeecCCCCcccC-CccccCCCCccEEEecCCcCCC-CC-CCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796          134 NGVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQ-PS-HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~-~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L  210 (525)
                      .+++.|+++.    .....+ |..+..+++|++|+|++|.+.. +. .+.++++|++|+|++|.+.. .....+..+++|
T Consensus        33 ~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLWLNN----NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSL  107 (174)
T ss_dssp             TTCSEEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEEeCC----CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCC
Confidence            5788888875    223344 5567789999999999999988 44 45789999999999998842 112346778899


Q ss_pred             cEEEEeecCC
Q 009796          211 EDLSFFYCFG  220 (525)
Q Consensus       211 e~L~L~~c~~  220 (525)
                      ++|+|++|..
T Consensus       108 ~~L~L~~N~~  117 (174)
T 2r9u_A          108 THIYLYNNPW  117 (174)
T ss_dssp             SEEECCSSCB
T ss_pred             CEEEeCCCCc
Confidence            9999988753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.34  E-value=0.00011  Score=72.46  Aligned_cols=90  Identities=17%  Similarity=0.159  Sum_probs=60.7

Q ss_pred             CcccCCccccCCCCccEEEecC-CcCCC-C-CCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee
Q 009796          149 SVNALPQTIFSAKLLTSLKLFG-CKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR  225 (525)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~-~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~  225 (525)
                      ....+|. +..+++|+.|+|++ |.+.. + ..+.++++|+.|+|++|.+.. ..+..+.++++|++|+|++|.. ..+.
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l-~~~~   96 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNAL-ESLS   96 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCC-SCCC
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCcc-ceeC
Confidence            3456788 77888899999986 88877 3 567889999999999988732 1234567888888888888753 2222


Q ss_pred             cc--cCCCccEEEEeeec
Q 009796          226 IS--EAHKLKSLILRFTY  241 (525)
Q Consensus       226 i~--~l~~L~~L~l~~c~  241 (525)
                      ..  ....|+.|++.+|.
T Consensus        97 ~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           97 WKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             STTTCSCCCCEEECCSSC
T ss_pred             HHHcccCCceEEEeeCCC
Confidence            11  11226666665553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.19  E-value=0.00066  Score=68.06  Aligned_cols=53  Identities=9%  Similarity=0.123  Sum_probs=23.9

Q ss_pred             CCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEec
Q 009796          251 VPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII  307 (525)
Q Consensus       251 ~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~  307 (525)
                      +.+|+.+.+..+. .-....+..++.++.+......+.+    ..+.++.+|+.+.+.
T Consensus       252 ~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~----~~F~~~~~L~~i~l~  305 (394)
T 4fs7_A          252 CTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE----KTFYGCSSLTEVKLL  305 (394)
T ss_dssp             CSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT----TTTTTCTTCCEEEEC
T ss_pred             cccceeEEcCCCcceeeccccccccccceeccCceeecc----ccccccccccccccc
Confidence            4455555554433 1112234455555555544332221    234455666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.01  E-value=0.00029  Score=69.27  Aligned_cols=74  Identities=16%  Similarity=0.155  Sum_probs=48.6

Q ss_pred             EEEecCC-cCCC-CCCCCCCCcccEEEece-eeechHHHHHHHhCCcCccEEEEeecCCCceee---cccCCCccEEEEe
Q 009796          165 SLKLFGC-KLEQ-PSHCANLQSLKKLSLDE-VYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKLKSLILR  238 (525)
Q Consensus       165 ~L~L~~~-~l~~-~~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~---i~~l~~L~~L~l~  238 (525)
                      .++++++ .+.. |. +..+++|++|+|++ |.+..- ....+.++++|++|+|++|. +..+.   +.++++|+.|+|+
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCC
Confidence            4677777 7777 66 88889999999986 877321 12346778888888888875 33332   2345555555555


Q ss_pred             eec
Q 009796          239 FTY  241 (525)
Q Consensus       239 ~c~  241 (525)
                      +|.
T Consensus        89 ~N~   91 (347)
T 2ifg_A           89 FNA   91 (347)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.84  E-value=0.00085  Score=67.24  Aligned_cols=61  Identities=3%  Similarity=0.003  Sum_probs=30.7

Q ss_pred             ccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEE
Q 009796          356 VSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMES  431 (525)
Q Consensus       356 ~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~  431 (525)
                      ++.++.+|+.++|..  .+...    -..-+.++.+|+++++..+   ... +++.     .+....+|+.+.+-.
T Consensus       315 aF~~c~~L~~i~lp~--~v~~I----~~~aF~~c~~L~~i~lp~~---l~~-I~~~-----aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          315 AFESCTSLVSIDLPY--LVEEI----GKRSFRGCTSLSNINFPLS---LRK-IGAN-----AFQGCINLKKVELPK  375 (394)
T ss_dssp             TTTTCTTCCEECCCT--TCCEE----CTTTTTTCTTCCEECCCTT---CCE-ECTT-----TBTTCTTCCEEEEEG
T ss_pred             hhcCCCCCCEEEeCC--cccEE----hHHhccCCCCCCEEEECcc---ccE-ehHH-----HhhCCCCCCEEEECC
Confidence            444567777777641  11111    1123466777777766422   111 3322     233466777777743

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.67  E-value=0.0066  Score=60.68  Aligned_cols=78  Identities=14%  Similarity=0.122  Sum_probs=39.9

Q ss_pred             CCCcceEEEecCCC--C-cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCC
Q 009796          340 APNLVSFDFEDNPI--P-IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHP  416 (525)
Q Consensus       340 ~p~L~~l~~~g~~~--~-~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~  416 (525)
                      +++|+.+.+.....  + ..+.++.+|+++.|..  .+..    .-..-+.+|.+|+++.|-.+   ... +++..    
T Consensus       287 c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~----I~~~aF~~C~~L~~i~ip~s---v~~-I~~~a----  352 (394)
T 4gt6_A          287 CPALQDIEFSSRITELPESVFAGCISLKSIDIPE--GITQ----ILDDAFAGCEQLERIAIPSS---VTK-IPESA----  352 (394)
T ss_dssp             CTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCE----ECTTTTTTCTTCCEEEECTT---CCB-CCGGG----
T ss_pred             ccccccccCCCcccccCceeecCCCCcCEEEeCC--cccE----ehHhHhhCCCCCCEEEECcc---cCE-EhHhH----
Confidence            45555555533211  1 3455677888888741  1111    11233567888888777421   112 33222    


Q ss_pred             CCCCCcccceEEEEEe
Q 009796          417 SLPLQVESLSLFMESF  432 (525)
Q Consensus       417 ~~~~~~~L~~L~L~~~  432 (525)
                       +....+|+.+.+.++
T Consensus       353 -F~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          353 -FSNCTALNNIEYSGS  367 (394)
T ss_dssp             -GTTCTTCCEEEESSC
T ss_pred             -hhCCCCCCEEEECCc
Confidence             334677887777654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.61  E-value=0.00053  Score=64.45  Aligned_cols=58  Identities=22%  Similarity=0.158  Sum_probs=29.3

Q ss_pred             CCCccEEEecCCcCCC----CCCCCCCCcccEEEeceeeech-HHHHHHHhCCcCccEEEEeecC
Q 009796          160 AKLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYVND-QMVQSLVRECRVLEDLSFFYCF  219 (525)
Q Consensus       160 ~~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~~~-~~l~~ll~~c~~Le~L~L~~c~  219 (525)
                      +++|+.|+|++|.+..    +..+..+++|+.|+|++|.+.+ ..+.. +..+ +|++|+|.+|.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNS  231 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTST
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCc
Confidence            4566666666666554    1222356666666666666522 12222 1222 55666665554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.04  E-value=0.0023  Score=60.01  Aligned_cols=15  Identities=13%  Similarity=-0.068  Sum_probs=9.5

Q ss_pred             hCCcCccEEEEeecC
Q 009796          205 RECRVLEDLSFFYCF  219 (525)
Q Consensus       205 ~~c~~Le~L~L~~c~  219 (525)
                      .++|+|++|+|++|.
T Consensus       167 ~~l~~L~~L~Ls~N~  181 (267)
T 3rw6_A          167 ENIPELLSLNLSNNR  181 (267)
T ss_dssp             HHCTTCCEEECTTSC
T ss_pred             hhCCCCCEEECCCCC
Confidence            456666666666664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.36  E-value=0.022  Score=56.81  Aligned_cols=100  Identities=16%  Similarity=0.158  Sum_probs=52.1

Q ss_pred             cCCCccEEEEeeeccccceEE-EeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEE
Q 009796          228 EAHKLKSLILRFTYQELESVE-IAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLS  305 (525)
Q Consensus       228 ~l~~L~~L~l~~c~~~l~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~  305 (525)
                      +|.+|+.+.+......+..-. .+|++|+.+.+...- .-....|.+|.+|+.+.|..+ ++. .-...+.+|.+|+++.
T Consensus       263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQ-ILDDAFAGCEQLERIA  340 (394)
T ss_dssp             TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEE
T ss_pred             ecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccE-ehHhHhhCCCCCCEEE
Confidence            456677666643221111111 246777777775443 222235677788888877432 221 1133466778888887


Q ss_pred             ecC-ccchhH-hhhcCcccceEcccc
Q 009796          306 IIS-LETLER-IMISSNRLMHLEVYN  329 (525)
Q Consensus       306 L~~-c~~l~~-~~~~~~~L~~L~l~~  329 (525)
                      |.. ...+.. ....|.+|+.+.+.+
T Consensus       341 ip~sv~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          341 IPSSVTKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             ECTTCCBCCGGGGTTCTTCCEEEESS
T ss_pred             ECcccCEEhHhHhhCCCCCCEEEECC
Confidence            743 222222 222356777776654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.98  E-value=0.048  Score=48.34  Aligned_cols=36  Identities=11%  Similarity=0.031  Sum_probs=18.8

Q ss_pred             CCCccEEEeeCCCCChhhhhh---hhcCCCCCcEEEecC
Q 009796          273 CPHLRKLVLFLPHFNDQEFHP---LISKFPLLEDLSIIS  308 (525)
Q Consensus       273 l~~L~~L~L~~~~~~~~~~~~---ll~~~~~Le~L~L~~  308 (525)
                      -+.|+.|+|+.|.|++.....   .+..-..|++|+|++
T Consensus        97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            345666666666666543332   233334466666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=91.80  E-value=0.2  Score=49.34  Aligned_cols=146  Identities=10%  Similarity=0.068  Sum_probs=77.4

Q ss_pred             cccCCCCccEEEecCCcCCC--------------CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCC-
Q 009796          156 TIFSAKLLTSLKLFGCKLEQ--------------PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG-  220 (525)
Q Consensus       156 ~l~~~~~L~~L~L~~~~l~~--------------~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~-  220 (525)
                      .+..|.+++.+.+.......              ...+..+..+..+.+......  ........|.+|+.+.+...-. 
T Consensus       153 ~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~f~~~~~l~~i~~~~~~~~  230 (379)
T 4h09_A          153 IGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT--VTAYGFSYGKNLKKITITSGVTT  230 (379)
T ss_dssp             TTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE--ECTTTTTTCSSCSEEECCTTCCE
T ss_pred             hhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE--EeecccccccccceeeeccceeE
Confidence            45567888887776542211              112233444555544332110  0012244567777776643311 


Q ss_pred             CceeecccCCCccEEEEeeeccccceEE----EeCCCccEEEecccc-ccceeeccCCCCccEEEeeCCCCChhhhhhhh
Q 009796          221 LKRLRISEAHKLKSLILRFTYQELESVE----IAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLI  295 (525)
Q Consensus       221 l~~l~i~~l~~L~~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll  295 (525)
                      +..-...+|.+|+.+.+...   +..+.    .++.+|+.+.+...- .-....|.+|++|+.+.+..+.++.- -...+
T Consensus       231 i~~~~f~~~~~L~~i~lp~~---v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I-~~~aF  306 (379)
T 4h09_A          231 LGDGAFYGMKALDEIAIPKN---VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETL-EPRVF  306 (379)
T ss_dssp             ECTTTTTTCSSCCEEEECTT---CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEE-CTTTT
T ss_pred             EccccccCCccceEEEcCCC---ccEeCccccceeehhccccccccceecccccccccccccccccccccccee-hhhhh
Confidence            11122334567777766432   22221    146677777775543 22223577888888888876655431 23456


Q ss_pred             cCCCCCcEEEec
Q 009796          296 SKFPLLEDLSII  307 (525)
Q Consensus       296 ~~~~~Le~L~L~  307 (525)
                      .+|.+|+.+.|.
T Consensus       307 ~~c~~L~~i~lp  318 (379)
T 4h09_A          307 MDCVKLSSVTLP  318 (379)
T ss_dssp             TTCTTCCEEECC
T ss_pred             cCCCCCCEEEcC
Confidence            788888888885

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=90.59  E-value=0.098  Score=46.33  Aligned_cols=21  Identities=14%  Similarity=0.270  Sum_probs=10.5

Q ss_pred             chhHHHHHHHHHHc--CCeEEEE
Q 009796          121 SPLFDKWVELAMEN--GVKELDF  141 (525)
Q Consensus       121 ~~~~~~wl~~~~~~--~l~~L~l  141 (525)
                      ..+++.++..+...  .+++|+|
T Consensus        26 ~t~v~~~l~~ll~~n~~L~~L~L   48 (197)
T 1pgv_A           26 DTDVESCINRLREDDTDLKEVNI   48 (197)
T ss_dssp             -CCHHHHHHHHHTTCSSCCEEEC
T ss_pred             CCCHHHHHHHHHhcCCCccEEEC
Confidence            34566666655442  3555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=89.29  E-value=0.27  Score=48.36  Aligned_cols=142  Identities=13%  Similarity=0.104  Sum_probs=85.3

Q ss_pred             cCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeee--chHHHHHHHhCCcCccEEEEeec-CCCceeecccCCCcc
Q 009796          158 FSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYV--NDQMVQSLVRECRVLEDLSFFYC-FGLKRLRISEAHKLK  233 (525)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~--~~~~l~~ll~~c~~Le~L~L~~c-~~l~~l~i~~l~~L~  233 (525)
                      ..+.++..+.+....... ...+..+.+|+.+.+.....  ..    ..+.+|..|+.+.+..+ ..+......+|.+|+
T Consensus       191 ~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~----~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~  266 (379)
T 4h09_A          191 PAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGD----GAFYGMKALDEIAIPKNVTSIGSFLLQNCTALK  266 (379)
T ss_dssp             CTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECT----TTTTTCSSCCEEEECTTCCEECTTTTTTCTTCC
T ss_pred             cccccccccccccceeEEeecccccccccceeeeccceeEEcc----ccccCCccceEEEcCCCccEeCccccceeehhc
Confidence            345566666655432211 34556677888887754321  22    23567888888888543 112222344567888


Q ss_pred             EEEEeeeccccceEE----EeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEec
Q 009796          234 SLILRFTYQELESVE----IAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII  307 (525)
Q Consensus       234 ~L~l~~c~~~l~~~~----~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~  307 (525)
                      .+.+...   +..+.    .+|++|+.+.+.++.  .-....|.+|.+|+.+.|..+ ++. .-...+.+|.+|+.+.+.
T Consensus       267 ~i~l~~~---i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          267 TLNFYAK---VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT-IQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEEECCC---CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCCCCCC
T ss_pred             ccccccc---ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE-EHHHHhhCCCCCCEEEEC
Confidence            8877543   33332    257889998887654  222346889999999998533 322 123457789999988875


Q ss_pred             C
Q 009796          308 S  308 (525)
Q Consensus       308 ~  308 (525)
                      .
T Consensus       342 ~  342 (379)
T 4h09_A          342 K  342 (379)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=83.00  E-value=0.76  Score=37.54  Aligned_cols=42  Identities=26%  Similarity=0.241  Sum_probs=32.0

Q ss_pred             cCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeee
Q 009796          152 ALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV  195 (525)
Q Consensus       152 ~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~  195 (525)
                      .+|..+.  .+|+.|+|++|.++.  +..+..+++|++|+|++|.+
T Consensus        24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5564432  468999999998887  44567788999999998877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	525
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	3e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-04
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	3e-04

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 8  DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF 43
          D IS LP  +  +++SFL PKD+++       WR  
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 8  DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVL 50
          D I+ LP  I   I ++L  +D++ +  +S  W K       L
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 8  DHISDLPTF----IIHHIMSFLSPKDVVRTGILSTTWRKF 43
          D I+ LP      I  +I+S+L  K +    ++   W + 
Sbjct: 9  DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	525
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.45
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.3
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.27
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.26
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.26
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.25
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.22
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.21
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.18
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.16
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.11
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.11
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.08
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.07
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.91
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.91
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.88
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.85
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.81
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.79
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.78
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.77
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.71
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.68
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.61
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.56
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.5
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.44
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.38
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.33
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.56
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.38
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.64
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.6
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.44
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.24
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.16

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=4e-14  Score=140.33  Aligned_cols=270  Identities=14%  Similarity=0.137  Sum_probs=141.4

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .++++|++..  ..  ...+ ..+..+++|++|+|++|.++..+.+.++++|++|++++|.+.+  +.. ++.+++|+.|
T Consensus        44 ~~l~~L~l~~--~~--I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~--i~~-l~~l~~L~~L  115 (384)
T d2omza2          44 DQVTTLQADR--LG--IKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGL  115 (384)
T ss_dssp             TTCCEEECCS--SC--CCCC-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CGG-GTTCTTCCEE
T ss_pred             CCCCEEECCC--CC--CCCc-cccccCCCCCEEeCcCCcCCCCccccCCccccccccccccccc--ccc-cccccccccc
Confidence            5789888865  21  2233 3566789999999999998884458889999999999998843  122 6789999999


Q ss_pred             EEeecCCCceeecccCCCccEEEEeeec-------------------------------------------cccceEEEe
Q 009796          214 SFFYCFGLKRLRISEAHKLKSLILRFTY-------------------------------------------QELESVEIA  250 (525)
Q Consensus       214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~-------------------------------------------~~l~~~~~~  250 (525)
                      ++.++.............+..+....+.                                           .........
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (384)
T d2omza2         116 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK  195 (384)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence            9887654111111111111111111110                                           000000113


Q ss_pred             CCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHh-hhcCcccceEcccc
Q 009796          251 VPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERI-MISSNRLMHLEVYN  329 (525)
Q Consensus       251 ~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~-~~~~~~L~~L~l~~  329 (525)
                      +++++.+.++++........+.+++|+.|++.++.+++  +. .+..+++|+.|+++++...... ...+++|+.|.++.
T Consensus       196 l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~  272 (384)
T d2omza2         196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA  272 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             ccccceeeccCCccCCCCcccccCCCCEEECCCCCCCC--cc-hhhcccccchhccccCccCCCCcccccccCCEeeccC
Confidence            45666666666551111234555666666666666654  22 2455666666666665321111 11235666666654


Q ss_pred             cc--chhhhcccCCCcceEEEecCCCC--cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeee
Q 009796          330 CS--GLNRINVDAPNLVSFDFEDNPIP--IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVL  405 (525)
Q Consensus       330 c~--~L~~l~~~~p~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~  405 (525)
                      +.  .+..+ ...+.++.+...++.+.  .....+++++.++++. +.+..     +. .+..+++|++|.++.|..+. 
T Consensus       273 ~~l~~~~~~-~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~-n~l~~-----l~-~l~~l~~L~~L~L~~n~l~~-  343 (384)
T d2omza2         273 NQISNISPL-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYF-NNISD-----IS-PVSSLTKLQRLFFANNKVSD-  343 (384)
T ss_dssp             SCCCCCGGG-TTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCS-SCCSC-----CG-GGGGCTTCCEEECCSSCCCC-
T ss_pred             cccCCCCcc-ccccccccccccccccccccccchhcccCeEECCC-CCCCC-----Cc-ccccCCCCCEEECCCCCCCC-
Confidence            32  22221 23344555555444432  2233455666666653 11111     11 13556666666666554332 


Q ss_pred             eeeccccccCCCCCCCcccceEEEEEe
Q 009796          406 FNIDEFRSCHPSLPLQVESLSLFMESF  432 (525)
Q Consensus       406 ~~lp~~~~~~~~~~~~~~L~~L~L~~~  432 (525)
                        +|       .+..+++|++|++.+|
T Consensus       344 --l~-------~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         344 --VS-------SLANLTNINWLSAGHN  361 (384)
T ss_dssp             --CG-------GGGGCTTCCEEECCSS
T ss_pred             --Ch-------hHcCCCCCCEEECCCC
Confidence              21       2334566666666655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.2e-15  Score=145.17  Aligned_cols=62  Identities=26%  Similarity=0.478  Sum_probs=27.4

Q ss_pred             CCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceee-echHHHHHHHhCCcCccEEEEeecCC
Q 009796          159 SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVY-VNDQMVQSLVRECRVLEDLSFFYCFG  220 (525)
Q Consensus       159 ~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~c~~Le~L~L~~c~~  220 (525)
                      .|++|++|+|++|.+..  ...++.+++|++|++++|. +++..+..++.+||+|++|++++|..
T Consensus        69 ~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~  133 (284)
T d2astb2          69 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD  133 (284)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred             hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccc
Confidence            34444444444444332  2223344444444444432 24444444444444444444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-14  Score=137.50  Aligned_cols=156  Identities=19%  Similarity=0.292  Sum_probs=77.4

Q ss_pred             CCCCccEEEecCCcCCC---CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee----cccCCC
Q 009796          159 SAKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR----ISEAHK  231 (525)
Q Consensus       159 ~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~----i~~l~~  231 (525)
                      ...+|++|++++|.+..   ...+.+|++|++|+|+++.+++..+.. ++.+++|++|++++|..++...    ..+|++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHh
Confidence            34566777776665543   233456666666666666655444433 4556666666666665554321    123455


Q ss_pred             ccEEEEeeeccccceEEEeCCCccEEEeccccccceeec-cCCCCccEEEeeCC--CCChhhhhhhhcCCCCCcEEEecC
Q 009796          232 LKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDV-AECPHLRKLVLFLP--HFNDQEFHPLISKFPLLEDLSIIS  308 (525)
Q Consensus       232 L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~L~~~--~~~~~~~~~ll~~~~~Le~L~L~~  308 (525)
                      |++|++++|. .+..                 ......+ ..+++|+.|+++++  .+++..+..++.++|+|++|++++
T Consensus       123 L~~L~ls~c~-~~~~-----------------~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~  184 (284)
T d2astb2         123 LDELNLSWCF-DFTE-----------------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  184 (284)
T ss_dssp             CCEEECCCCT-TCCH-----------------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             cccccccccc-cccc-----------------ccchhhhcccccccchhhhccccccccccccccccccccccccccccc
Confidence            5555555553 1110                 0000111 12344555555432  344444555555666666666666


Q ss_pred             ccchhHhhh----cCcccceEccccccch
Q 009796          309 LETLERIMI----SSNRLMHLEVYNCSGL  333 (525)
Q Consensus       309 c~~l~~~~~----~~~~L~~L~l~~c~~L  333 (525)
                      |..+++..+    .+++|++|++++|.++
T Consensus       185 ~~~itd~~~~~l~~~~~L~~L~L~~C~~i  213 (284)
T d2astb2         185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDI  213 (284)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred             ccCCCchhhhhhcccCcCCEEECCCCCCC
Confidence            554433221    1345555555555433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=1.3e-13  Score=136.56  Aligned_cols=268  Identities=16%  Similarity=0.194  Sum_probs=180.6

Q ss_pred             CCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEe
Q 009796          159 SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR  238 (525)
Q Consensus       159 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~  238 (525)
                      .+.+|++|+++++.+....++..+++|++|+|++|.+++  +.. ++++++|++|++++|.......+.++++|+.|++.
T Consensus        42 ~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~--l~~-l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~  118 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF  118 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             HhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCC--Ccc-ccCCccccccccccccccccccccccccccccccc
Confidence            457899999999998875567889999999999999853  222 78999999999999976444457788999999998


Q ss_pred             eec-cccceEEEeCCCccEEEec-------------------------------------------cccccceeeccCCC
Q 009796          239 FTY-QELESVEIAVPSLQQLELS-------------------------------------------FSRVPRLLDVAECP  274 (525)
Q Consensus       239 ~c~-~~l~~~~~~~~~L~~L~l~-------------------------------------------~~~~~~~~~~~~l~  274 (525)
                      ++. ..+.... ....+..+...                                           .+..........++
T Consensus       119 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (384)
T d2omza2         119 NNQITDIDPLK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT  197 (384)
T ss_dssp             SSCCCCCGGGT-TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             ccccccccccc-ccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            775 1111100 00111111110                                           00011123456788


Q ss_pred             CccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHh--hhcCcccceEcccccc--chhhhcccCCCcceEEEec
Q 009796          275 HLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERI--MISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFED  350 (525)
Q Consensus       275 ~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~--~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~l~~~g  350 (525)
                      +++.+.++.+.+++.  .. ...+++|++|+++++.. +.+  ...+++|+.|++.++.  .+..+ ...++|+.+.+++
T Consensus       198 ~~~~l~l~~n~i~~~--~~-~~~~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~L~~L~l~~  272 (384)
T d2omza2         198 NLESLIATNNQISDI--TP-LGILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGA  272 (384)
T ss_dssp             TCSEEECCSSCCCCC--GG-GGGCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCCCGGG-TTCTTCSEEECCS
T ss_pred             ccceeeccCCccCCC--Cc-ccccCCCCEEECCCCCC-CCcchhhcccccchhccccCccCCCCcc-cccccCCEeeccC
Confidence            999999999988873  22 45678999999998752 222  2246789999998854  23332 4578999999988


Q ss_pred             CCCC--cccccCCCCceEEEEeeecCChhccccHHHHHHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEE
Q 009796          351 NPIP--IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLF  428 (525)
Q Consensus       351 ~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~  428 (525)
                      +.+.  ..+..++.++.+.+.. +....     + ..+..+++++.|+++.+.....   +       .+..+++|++|+
T Consensus       273 ~~l~~~~~~~~~~~l~~l~~~~-n~l~~-----~-~~~~~~~~l~~L~ls~n~l~~l---~-------~l~~l~~L~~L~  335 (384)
T d2omza2         273 NQISNISPLAGLTALTNLELNE-NQLED-----I-SPISNLKNLTYLTLYFNNISDI---S-------PVSSLTKLQRLF  335 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCS-SCCSC-----C-GGGGGCTTCSEEECCSSCCSCC---G-------GGGGCTTCCEEE
T ss_pred             cccCCCCccccccccccccccc-ccccc-----c-cccchhcccCeEECCCCCCCCC---c-------ccccCCCCCEEE
Confidence            7664  3444677788888763 22221     1 1257889999999997766542   2       356789999999


Q ss_pred             EEEeeeccCCCchhHHHHHHhHhhhccccceeec
Q 009796          429 MESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLS  462 (525)
Q Consensus       429 L~~~~~~~~~~~~~~~~~~~~Ll~~~~l~~l~l~  462 (525)
                      +.+|.+...          ..+-.++.|+++.+.
T Consensus       336 L~~n~l~~l----------~~l~~l~~L~~L~l~  359 (384)
T d2omza2         336 FANNKVSDV----------SSLANLTNINWLSAG  359 (384)
T ss_dssp             CCSSCCCCC----------GGGGGCTTCCEEECC
T ss_pred             CCCCCCCCC----------hhHcCCCCCCEEECC
Confidence            998843221          123345689999994

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.30  E-value=4.8e-13  Score=128.86  Aligned_cols=237  Identities=14%  Similarity=0.048  Sum_probs=127.8

Q ss_pred             CCccEEEecCCcCCC----CCCCCCCCcccEEEece-eeechHHHHHHHhCCcCccEEEEeecCCCcee--ecccCCCcc
Q 009796          161 KLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDE-VYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHKLK  233 (525)
Q Consensus       161 ~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l--~i~~l~~L~  233 (525)
                      .+++.|+|+++.+.+    |..++++++|++|+|++ |.+.+ .++..++++++|++|+|++|......  .+..+++|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccc-ccccccccccccchhhhccccccccccccccchhhhc
Confidence            368999999988765    67788899999999987 45532 24555778888888888887642211  123445666


Q ss_pred             EEEEeeec--cccceEEEeCCCccEEEecccc--ccceeeccCCCCc-cEEEeeCCCCChhhhhhhhcCCCCCcEEEecC
Q 009796          234 SLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHL-RKLVLFLPHFNDQEFHPLISKFPLLEDLSIIS  308 (525)
Q Consensus       234 ~L~l~~c~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L-~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~  308 (525)
                      .+++..|.  ..++.....++.|+.++++++.  +..+..+..+..+ +.+.++.+.+++.. ...+.+.. +..+++..
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~-~~~~~~l~-~~~l~l~~  206 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI-PPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC-CGGGGGCC-CSEEECCS
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccc-cccccccc-cccccccc
Confidence            66665554  1111111134455555555444  2233333344333 44444444443321 11122221 11233333


Q ss_pred             ccchhHhhhcCcccceEccccccchhhhcccCCCcceEEEecCCCC---cccccCCCCceEEEEeeecCChhccccHHHH
Q 009796          309 LETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP---IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEF  385 (525)
Q Consensus       309 c~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~  385 (525)
                      +....                  .+.......++++.+.+.++.+.   ..+..+++|+.++++. +.+    .+.++..
T Consensus       207 ~~~~~------------------~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~-N~l----~g~iP~~  263 (313)
T d1ogqa_         207 NMLEG------------------DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN-NRI----YGTLPQG  263 (313)
T ss_dssp             SEEEE------------------CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCS-SCC----EECCCGG
T ss_pred             ccccc------------------cccccccccccccccccccccccccccccccccccccccCcc-Cee----cccCChH
Confidence            21111                  11122223445555555554432   2333567888888874 222    2234455


Q ss_pred             HHhccccceEEEEEEeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009796          386 IGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (525)
Q Consensus       386 l~~l~~L~~L~L~~~~~~~~~~lp~~~~~~~~~~~~~~L~~L~L~~~  432 (525)
                      +.++++|++|+|++|...+.  +|       ....+.+|+.+.+.+|
T Consensus       264 l~~L~~L~~L~Ls~N~l~g~--iP-------~~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         264 LTQLKFLHSLNVSFNNLCGE--IP-------QGGNLQRFDVSAYANN  301 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEE--CC-------CSTTGGGSCGGGTCSS
T ss_pred             HhCCCCCCEEECcCCccccc--CC-------CcccCCCCCHHHhCCC
Confidence            67888999999988887765  44       4556677777766655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.27  E-value=6e-12  Score=120.49  Aligned_cols=154  Identities=15%  Similarity=0.093  Sum_probs=100.8

Q ss_pred             CcccCCccccCCCCccEEEecCCcCCC-C-CCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeec
Q 009796          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRI  226 (525)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i  226 (525)
                      ....+|..+.  +++++|+|++|.++. + ..+.++++|++|+++++.+..- .+..+.+++.|++|++++|. ++.+..
T Consensus        21 ~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n~-l~~l~~   96 (305)
T d1xkua_          21 GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQ-LKELPE   96 (305)
T ss_dssp             CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC-CSBCCS
T ss_pred             CCCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-chhhhhCCCccCEecccCCc-cCcCcc
Confidence            3456777664  579999999999887 4 4678899999999999987321 13446789999999999885 444444


Q ss_pred             ccCCCccEEEEeeec-cccceEEE-eCCCccEEEecccc----ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCC
Q 009796          227 SEAHKLKSLILRFTY-QELESVEI-AVPSLQQLELSFSR----VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPL  300 (525)
Q Consensus       227 ~~l~~L~~L~l~~c~-~~l~~~~~-~~~~L~~L~l~~~~----~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~  300 (525)
                      ...+.|+.|.+..+. ..+..... ..+.+..+....+.    ......+..+++|+.+++..+.++.  +..  ..+++
T Consensus        97 ~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~--l~~--~~~~~  172 (305)
T d1xkua_          97 KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQ--GLPPS  172 (305)
T ss_dssp             SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCS--SCCTT
T ss_pred             chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc--cCc--ccCCc
Confidence            444678888877664 12211111 34556666666554    2223346667778888887776654  111  23567


Q ss_pred             CcEEEecCcc
Q 009796          301 LEDLSIISLE  310 (525)
Q Consensus       301 Le~L~L~~c~  310 (525)
                      |+.|++.++.
T Consensus       173 L~~L~l~~n~  182 (305)
T d1xkua_         173 LTELHLDGNK  182 (305)
T ss_dssp             CSEEECTTSC
T ss_pred             cCEEECCCCc
Confidence            7777777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=7.4e-12  Score=111.92  Aligned_cols=99  Identities=15%  Similarity=0.163  Sum_probs=51.3

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .++++|++..  .  ....++ .+..+++|++|++++|.+.....+.++++|++|++++|.+..  +.. +.+++.|++|
T Consensus        40 ~~l~~L~l~~--~--~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~--~~~-l~~l~~L~~L  111 (199)
T d2omxa2          40 DQVTTLQADR--L--GIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGL  111 (199)
T ss_dssp             TTCCEEECTT--S--CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CGG-GTTCTTCSEE
T ss_pred             cCCCEEECCC--C--CCCCcc-ccccCCCcCcCccccccccCcccccCCccccccccccccccc--ccc-cccccccccc
Confidence            4666666543  1  111222 344566666666666666553335566666666666665521  111 4556666666


Q ss_pred             EEeecCCCceeecccCCCccEEEEeee
Q 009796          214 SFFYCFGLKRLRISEAHKLKSLILRFT  240 (525)
Q Consensus       214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c  240 (525)
                      ++++|.......+..+++|+.|++++|
T Consensus       112 ~l~~~~~~~~~~~~~l~~L~~L~l~~n  138 (199)
T d2omxa2         112 TLFNNQITDIDPLKNLTNLNRLELSSN  138 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cccccccccccccchhhhhHHhhhhhh
Confidence            666554433223334455555555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=1.1e-11  Score=113.26  Aligned_cols=163  Identities=17%  Similarity=0.216  Sum_probs=77.1

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .+++.|++..  +  ....++ .+..+++|++|++++|.+.....+..+++|++++++++.++.  +.. +..+++|+.+
T Consensus        41 ~~L~~L~l~~--~--~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l  112 (227)
T d1h6ua2          41 DGITTLSAFG--T--GVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTL  112 (227)
T ss_dssp             HTCCEEECTT--S--CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEE
T ss_pred             CCcCEEECCC--C--CCCcch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--ccc-cccccccccc
Confidence            3566665543  1  112332 345566666666666665553335566666666666665521  111 3456666666


Q ss_pred             EEeecCCCceeecccCCCccEEEEeeeccccceE--EEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhh
Q 009796          214 SFFYCFGLKRLRISEAHKLKSLILRFTYQELESV--EIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEF  291 (525)
Q Consensus       214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~  291 (525)
                      .+++|.......+...+.++.+.+..+.  +...  ...+++|++|.++++.......++++++|+.|+++++.+++  +
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~--l  188 (227)
T d1h6ua2         113 DLTSTQITDVTPLAGLSNLQVLYLDLNQ--ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--I  188 (227)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSC--CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--C
T ss_pred             ccccccccccchhccccchhhhhchhhh--hchhhhhccccccccccccccccccchhhcccccceecccCCCccCC--C
Confidence            6665544332233333455555554443  1111  11344555555555442112234455555555555554443  1


Q ss_pred             hhhhcCCCCCcEEEecCc
Q 009796          292 HPLISKFPLLEDLSIISL  309 (525)
Q Consensus       292 ~~ll~~~~~Le~L~L~~c  309 (525)
                      .. +.++++|++|+|++|
T Consensus       189 ~~-l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         189 SP-LASLPNLIEVHLKNN  205 (227)
T ss_dssp             GG-GGGCTTCCEEECTTS
T ss_pred             hh-hcCCCCCCEEECcCC
Confidence            11 344455555555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.25  E-value=1.2e-11  Score=113.08  Aligned_cols=184  Identities=17%  Similarity=0.200  Sum_probs=138.4

Q ss_pred             cCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEE
Q 009796          158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL  237 (525)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l  237 (525)
                      ..+.+|+.|++.+|.+.....+..+++|++|++++|.+++-  .. +..+++|+.+++.+|....--.+..+++|+.+++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~--~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred             HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecc--cc-cccccccccccccccccccccccccccccccccc
Confidence            45789999999999988755678999999999999988431  11 6889999999999886432223667899999999


Q ss_pred             eeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhHhh
Q 009796          238 RFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIM  316 (525)
Q Consensus       238 ~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~  316 (525)
                      .+|. ..... ....+.++.+.++.+.......+..+++|+.|++.++.+++.  . .+.++++|++|+++++. ++.+.
T Consensus       115 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~Ls~n~-l~~l~  189 (227)
T d1h6ua2         115 TSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--T-PLANLSKLTTLKADDNK-ISDIS  189 (227)
T ss_dssp             TTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGTTCTTCCEEECCSSC-CCCCG
T ss_pred             ccccccccch-hccccchhhhhchhhhhchhhhhccccccccccccccccccc--h-hhcccccceecccCCCc-cCCCh
Confidence            8886 11111 125688899998887743444578899999999999988763  2 26789999999999874 33332


Q ss_pred             --hcCcccceEccccccchhhhc--ccCCCcceEEEec
Q 009796          317 --ISSNRLMHLEVYNCSGLNRIN--VDAPNLVSFDFED  350 (525)
Q Consensus       317 --~~~~~L~~L~l~~c~~L~~l~--~~~p~L~~l~~~g  350 (525)
                        ..+++|++|+++++ ++..+.  ..+++|+.|+++.
T Consensus       190 ~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         190 PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             hhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence              24689999999997 454442  4678999988764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=1.6e-11  Score=110.69  Aligned_cols=163  Identities=23%  Similarity=0.243  Sum_probs=111.0

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      ..+++|++..  +  ....++ .+..+++|++|+|++|.+...+....+++|++|++++|.+++  ++. +.++++|+.|
T Consensus        46 ~~L~~L~l~~--~--~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L  117 (210)
T d1h6ta2          46 NSIDQIIANN--S--DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSL  117 (210)
T ss_dssp             HTCCEEECTT--S--CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEE
T ss_pred             cCccEEECcC--C--CCCCch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--ccc-cccccccccc
Confidence            3688887654  1  122233 466788999999999988874456788999999999988743  332 6778999999


Q ss_pred             EEeecCCCceeecccCCCccEEEEeeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhh
Q 009796          214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFH  292 (525)
Q Consensus       214 ~L~~c~~l~~l~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~  292 (525)
                      ++.+|.....-.+..+++|+.+++.++. ..... ...+++|+.++++++.......++++++|+.|+++++.+++  +.
T Consensus       118 ~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~-~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~--l~  194 (210)
T d1h6ta2         118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LR  194 (210)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--CG
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccCCCCCCEEECCCCCCCC--Ch
Confidence            9988865433335566788888887775 11111 12467888888888772222246778888888888887765  33


Q ss_pred             hhhcCCCCCcEEEecC
Q 009796          293 PLISKFPLLEDLSIIS  308 (525)
Q Consensus       293 ~ll~~~~~Le~L~L~~  308 (525)
                       .+.++++|+.|+|++
T Consensus       195 -~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 -ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -GGTTCTTCSEEEEEE
T ss_pred             -hhcCCCCCCEEEccC
Confidence             366778888888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=2.1e-11  Score=108.95  Aligned_cols=148  Identities=16%  Similarity=0.186  Sum_probs=116.6

Q ss_pred             CCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEe
Q 009796          159 SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR  238 (525)
Q Consensus       159 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~  238 (525)
                      .+.++++|++++|.+.....+..+++|++|++++|.+++-  .. ++++++|++|++++|....--.+.++++|+.|+++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~  114 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF  114 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCc--cc-ccCCccccccccccccccccccccccccccccccc
Confidence            4678999999999988755678899999999999988432  22 78999999999999875443346678999999999


Q ss_pred             eec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhH
Q 009796          239 FTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLER  314 (525)
Q Consensus       239 ~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~  314 (525)
                      +|. ..... ...+++|+.|+++++.......+..+++|+.|++.++.+++  +. .+.++++|++|+++++. ++.
T Consensus       115 ~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~--l~-~l~~l~~L~~L~ls~N~-i~~  186 (199)
T d2omxa2         115 NNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD--LK-PLANLTTLERLDISSNK-VSD  186 (199)
T ss_dssp             SSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC--CG-GGTTCTTCCEEECCSSC-CCC
T ss_pred             ccccccccc-cchhhhhHHhhhhhhhhcccccccccccccccccccccccC--Cc-cccCCCCCCEEECCCCC-CCC
Confidence            886 22111 22579999999999983333458899999999999999887  33 36789999999999974 443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=2.8e-11  Score=108.99  Aligned_cols=144  Identities=18%  Similarity=0.221  Sum_probs=109.2

Q ss_pred             CCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCcee-ecccCCCccEEEE
Q 009796          159 SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL-RISEAHKLKSLIL  237 (525)
Q Consensus       159 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l-~i~~l~~L~~L~l  237 (525)
                      .+.+|+.|++++|.+.....+..+++|++|+|++|.+++  +.. ++.+++|++|++++|.. +.+ .+..+++|+.|++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~--l~~-~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC--ccc-cccCccccccccccccc-ccccccccccccccccc
Confidence            357899999999998875567889999999999998843  222 57899999999999863 333 3566789999999


Q ss_pred             eeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796          238 RFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       238 ~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      .+|. ..+.. ...+++|+.++++++.......+..+++|+.++++++.+++  +.. +.++++|++|+++++.
T Consensus       120 ~~~~~~~~~~-l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~--i~~-l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         120 EHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             TTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC
T ss_pred             cccccccccc-ccccccccccccccccccccccccccccccccccccccccc--ccc-ccCCCCCCEEECCCCC
Confidence            8886 22221 12578889999888873334457788899999999888876  332 6788899999998753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.16  E-value=1.8e-11  Score=117.48  Aligned_cols=240  Identities=15%  Similarity=0.099  Sum_probs=155.0

Q ss_pred             CCeEEEEEeecCCCCcccCCccccCCCCccEEEecC-CcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFG-CKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (525)
Q Consensus       135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~-~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le  211 (525)
                      +|.+|++... .-.....+|..+.++++|++|+|++ |.+.+  |..++++++|++|+|++|.+... ....+..++.|+
T Consensus        51 ~v~~L~L~~~-~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred             EEEEEECCCC-CCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchhhhc
Confidence            5888888762 1223457899999999999999997 57765  78899999999999999988321 234467889999


Q ss_pred             EEEEeecCCCcee--ecccCCCccEEEEeeec--cccceEEEeCCC-ccEEEecccc--ccceeeccCCCCccEEEeeCC
Q 009796          212 DLSFFYCFGLKRL--RISEAHKLKSLILRFTY--QELESVEIAVPS-LQQLELSFSR--VPRLLDVAECPHLRKLVLFLP  284 (525)
Q Consensus       212 ~L~L~~c~~l~~l--~i~~l~~L~~L~l~~c~--~~l~~~~~~~~~-L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~  284 (525)
                      .+++++|.....+  .+.++++|+.+++++|.  ..++......+. ++.+.++++.  ...+..++.+.. ..+++..+
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~  207 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSS
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            9999988654433  35678999999999886  122222223444 4788888777  333444555544 46777777


Q ss_pred             CCChhhhhhhhcCCCCCcEEEecCccchhHhhh--cCcccceEccccccchhhhcccCCCcceEEEecCCCCcccccCCC
Q 009796          285 HFNDQEFHPLISKFPLLEDLSIISLETLERIMI--SSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPC  362 (525)
Q Consensus       285 ~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~~~~--~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~~~~~~~~~~  362 (525)
                      ...+. .......+++|+.|++.++.....+..  ..+.|+.|+++++.           +     .| .+|..+.++++
T Consensus       208 ~~~~~-~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~-----------l-----~g-~iP~~l~~L~~  269 (313)
T d1ogqa_         208 MLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR-----------I-----YG-TLPQGLTQLKF  269 (313)
T ss_dssp             EEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC-----------C-----EE-CCCGGGGGCTT
T ss_pred             ccccc-ccccccccccccccccccccccccccccccccccccccCccCe-----------e-----cc-cCChHHhCCCC
Confidence            66554 455677889999999888643211110  12334444433321           1     11 23556667888


Q ss_pred             CceEEEEeeecCChhccccHHHHHHhccccceEEEEEEe
Q 009796          363 PLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNY  401 (525)
Q Consensus       363 L~~l~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~  401 (525)
                      |+.+++++ +.+.    +.+++ +.++++|+.+.+.+|.
T Consensus       270 L~~L~Ls~-N~l~----g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         270 LHSLNVSF-NNLC----GEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCEEECCS-SEEE----EECCC-STTGGGSCGGGTCSSS
T ss_pred             CCEEECcC-Cccc----ccCCC-cccCCCCCHHHhCCCc
Confidence            88888874 2222    11222 2567777777777654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.11  E-value=2.1e-10  Score=109.47  Aligned_cols=165  Identities=19%  Similarity=0.217  Sum_probs=86.9

Q ss_pred             cCCeEEEEEeecCCCCcccCCc-cccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796          134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L  210 (525)
                      ++++.|+++.    .....+|. .+..+++|++|++++|.+..  +..+.++++|++|++++|.+..  ++.  ..++.|
T Consensus        31 ~~l~~L~Ls~----N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~--l~~--~~~~~l  102 (305)
T d1xkua_          31 PDTALLDLQN----NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTL  102 (305)
T ss_dssp             TTCCEEECCS----SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTC
T ss_pred             CCCCEEECcC----CcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc--Ccc--chhhhh
Confidence            4677777765    23445665 45567888888888887776  4557778888888888876632  111  234566


Q ss_pred             cEEEEeecCCCc--ee--------------------------ecccCCCccEEEEeeeccccceEEE-eCCCccEEEecc
Q 009796          211 EDLSFFYCFGLK--RL--------------------------RISEAHKLKSLILRFTYQELESVEI-AVPSLQQLELSF  261 (525)
Q Consensus       211 e~L~L~~c~~l~--~l--------------------------~i~~l~~L~~L~l~~c~~~l~~~~~-~~~~L~~L~l~~  261 (525)
                      +.|.+.++....  ..                          ....+++|+.+++.+|.  +..+.. ..++|++|++++
T Consensus       103 ~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~--l~~l~~~~~~~L~~L~l~~  180 (305)
T d1xkua_         103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN--ITTIPQGLPPSLTELHLDG  180 (305)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC--CCSCCSSCCTTCSEEECTT
T ss_pred             hhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC--ccccCcccCCccCEEECCC
Confidence            666665543211  00                          11123445555554443  111111 234555555555


Q ss_pred             cc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCc
Q 009796          262 SR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL  309 (525)
Q Consensus       262 ~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c  309 (525)
                      +.  ...+..+..++.++.|+++++.+++. ....+.++++|++|+|+++
T Consensus       181 n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~-~~~~~~~l~~L~~L~L~~N  229 (305)
T d1xkua_         181 NKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNN  229 (305)
T ss_dssp             SCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSS
T ss_pred             CcCCCCChhHhhcccccccccccccccccc-ccccccccccceeeecccc
Confidence            44  22223445555555555555555442 1233445555555555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=9.1e-11  Score=109.75  Aligned_cols=154  Identities=21%  Similarity=0.105  Sum_probs=103.2

Q ss_pred             cccCCccccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce-eec
Q 009796          150 VNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR-LRI  226 (525)
Q Consensus       150 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~-l~i  226 (525)
                      -..+|..+.  ++|++|+|++|.+..  +..+.++++|++|+|++|.++.  ++. .+.+++|++|+|++|..... ..+
T Consensus        22 L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~N~l~~~~~~~   96 (266)
T d1p9ag_          22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQV-DGTLPVLGTLDLSHNQLQSLPLLG   96 (266)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EEC-CSCCTTCCEEECCSSCCSSCCCCT
T ss_pred             CCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--ccc-cccccccccccccccccccccccc
Confidence            345676553  578899999988876  4557788999999999887742  221 35688888888888854222 123


Q ss_pred             ccCCCccEEEEeeec-cccceE-EEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCc
Q 009796          227 SEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE  302 (525)
Q Consensus       227 ~~l~~L~~L~l~~c~-~~l~~~-~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le  302 (525)
                      .++++|+.|+++++. ..+... ....++++.|.+.++.  ...+..+..+++|+.++++++.++.. ....+..+++|+
T Consensus        97 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~-~~~~~~~l~~L~  175 (266)
T d1p9ag_          97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLD  175 (266)
T ss_dssp             TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCC
T ss_pred             ccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc-Cccccccccccc
Confidence            456788888888775 222211 1246778888888776  22233456677888888888877753 334566778888


Q ss_pred             EEEecCc
Q 009796          303 DLSIISL  309 (525)
Q Consensus       303 ~L~L~~c  309 (525)
                      +|+|+++
T Consensus       176 ~L~Ls~N  182 (266)
T d1p9ag_         176 TLLLQEN  182 (266)
T ss_dssp             EEECCSS
T ss_pred             eeecccC
Confidence            8888774

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.1e-10  Score=107.15  Aligned_cols=188  Identities=19%  Similarity=0.141  Sum_probs=121.2

Q ss_pred             CCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee-cccCCCccEEEE
Q 009796          160 AKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-ISEAHKLKSLIL  237 (525)
Q Consensus       160 ~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~-i~~l~~L~~L~l  237 (525)
                      ..++..++.+++.++. |..+  .++|++|+|++|.++.- ....+.++++|++|+|++|. ++.+. ...+++|+.|++
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~l--p~~l~~L~Ls~N~i~~l-~~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~L   84 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDL   84 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEEC
T ss_pred             cCCCeEEEccCCCCCeeCcCc--CcCCCEEECcCCcCCCc-CHHHhhcccccccccccccc-cccccccccccccccccc
Confidence            3456667888888776 4433  25899999999988421 12346789999999999985 44444 346788999999


Q ss_pred             eeec-cccceEEEeCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCccchhH
Q 009796          238 RFTY-QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLER  314 (525)
Q Consensus       238 ~~c~-~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~~l~~  314 (525)
                      ++|. ..........++|+.|+++++.  ......+..+++++.|++.++.++.- ....+..+++|+.|+++++.. +.
T Consensus        85 s~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l-~~~~~~~l~~l~~l~l~~N~l-~~  162 (266)
T d1p9ag_          85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNL-TE  162 (266)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCC-SC
T ss_pred             ccccccccccccccccccccccccccccceeecccccccccccccccccccccee-ccccccccccchhcccccccc-cc
Confidence            8886 2233333357888888888877  33344566778888888888877652 344566778888888887531 11


Q ss_pred             hhhcCcccceEccccccchhhhcccCCCcceEEEecCCC---CcccccCCCCceEEEEe
Q 009796          315 IMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPI---PIVSTNAPCPLNVLFSN  370 (525)
Q Consensus       315 ~~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~l~~~g~~~---~~~~~~~~~L~~l~l~~  370 (525)
                                +..       ......++|+.|+++++.+   |..+..+++|+.+++++
T Consensus       163 ----------~~~-------~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         163 ----------LPA-------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             ----------CCT-------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred             ----------cCc-------cccccccccceeecccCCCcccChhHCCCCCCCEEEecC
Confidence                      110       0011234555555555543   23344577788888874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=6.3e-10  Score=104.92  Aligned_cols=89  Identities=18%  Similarity=0.191  Sum_probs=55.4

Q ss_pred             CcccCCccccCCCCccEEEecCCcCCC-C-CCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee-
Q 009796          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-  225 (525)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~-  225 (525)
                      ....+|..+.  +++++|+|++|.++. + ..+.++++|++|+++++.+..- ......+++.++++.+..+..+..+. 
T Consensus        22 ~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i-~~~~~~~~~~~~~l~~~~~~~~~~l~~   98 (284)
T d1ozna_          22 GLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDP   98 (284)
T ss_dssp             CCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             CCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence            3445665553  567889999988877 3 4577888899999888876321 12234566777777766555444332 


Q ss_pred             --cccCCCccEEEEeee
Q 009796          226 --ISEAHKLKSLILRFT  240 (525)
Q Consensus       226 --i~~l~~L~~L~l~~c  240 (525)
                        +.++++|+.|++.+|
T Consensus        99 ~~~~~l~~L~~L~l~~n  115 (284)
T d1ozna_          99 ATFHGLGRLHTLHLDRC  115 (284)
T ss_dssp             TTTTTCTTCCEEECTTS
T ss_pred             hhhcccccCCEEecCCc
Confidence              334455555555544

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.3e-11  Score=76.81  Aligned_cols=35  Identities=17%  Similarity=0.392  Sum_probs=33.0

Q ss_pred             CCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhhh
Q 009796           10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQ   44 (525)
Q Consensus        10 is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw   44 (525)
                      ++.||+||+.+||+|||.+|+++++.|||+|+++-
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=6.5e-10  Score=104.84  Aligned_cols=172  Identities=16%  Similarity=0.095  Sum_probs=116.3

Q ss_pred             cCCeEEEEEeecCCCCcccCCc-cccCCCCccEEEecCCcCCC--CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCc
Q 009796          134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~L  210 (525)
                      ..+++|+|+.  +  ....+|. .+.++++|++|+++++.+..  +.....++.++.+...........-...+.++++|
T Consensus        32 ~~~~~L~Ls~--N--~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          32 AASQRIFLHG--N--RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (284)
T ss_dssp             TTCSEEECTT--S--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCEEECcC--C--cCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccC
Confidence            4678888765  2  2345554 46678999999999998876  45566788888887754432111113346788999


Q ss_pred             cEEEEeecCCC--ceeecccCCCccEEEEeeec-cccceEEE-eCCCccEEEecccc--ccceeeccCCCCccEEEeeCC
Q 009796          211 EDLSFFYCFGL--KRLRISEAHKLKSLILRFTY-QELESVEI-AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLP  284 (525)
Q Consensus       211 e~L~L~~c~~l--~~l~i~~l~~L~~L~l~~c~-~~l~~~~~-~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~  284 (525)
                      ++|++++|...  .......+++|+.+++.++. ..+..-.+ ..++|++|+++++.  ...+..+.++++|+.++++++
T Consensus       108 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhc
Confidence            99999888642  22233356788899988875 22221112 46788888888887  222345778888888888888


Q ss_pred             CCChhhhhhhhcCCCCCcEEEecCcc
Q 009796          285 HFNDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       285 ~~~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      .+++. .+..+.++++|+.|+++++.
T Consensus       188 ~l~~i-~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         188 RVAHV-HPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             CCCEE-CTTTTTTCTTCCEEECCSSC
T ss_pred             ccccc-ChhHhhhhhhcccccccccc
Confidence            88763 35567788888888888754

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=4.9e-10  Score=112.61  Aligned_cols=343  Identities=15%  Similarity=0.061  Sum_probs=196.0

Q ss_pred             ccceEEEEEeeccccCCchhHHHHHHHHHHcCCeEEEEEeecCCCC---cccCCccccCCCCccEEEecCCcCCC-----
Q 009796          104 PMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNS---VNALPQTIFSAKLLTSLKLFGCKLEQ-----  175 (525)
Q Consensus       104 ~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~---~~~lp~~l~~~~~L~~L~L~~~~l~~-----  175 (525)
                      .++++.+....    -....+..++  ...++++.|+|..  +...   ...+...+..+++|++|+|++|.+..     
T Consensus         3 ~l~~ld~~~~~----i~~~~~~~l~--~~l~~l~~L~L~~--~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~   74 (460)
T d1z7xw1           3 DIQSLDIQCEE----LSDARWAELL--PLLQQCQVVRLDD--CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC   74 (460)
T ss_dssp             EEEEEEEESCC----CCHHHHHHHH--HHHTTCSEEEEES--SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred             CCCEEEeeCCc----CChHHHHHHH--HhCCCCCEEEeCC--CCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHH
Confidence            45666665332    1133344444  2347899999987  3221   12345556788999999999998753     


Q ss_pred             -CCC-CCCCCcccEEEeceeeechHH---HHHHHhCCcCccEEEEeecCCCc------------------eee-------
Q 009796          176 -PSH-CANLQSLKKLSLDEVYVNDQM---VQSLVRECRVLEDLSFFYCFGLK------------------RLR-------  225 (525)
Q Consensus       176 -~~~-~~~l~~L~~L~L~~~~~~~~~---l~~ll~~c~~Le~L~L~~c~~l~------------------~l~-------  225 (525)
                       ... ....++|++|+|++|.+++..   +...+..+++|++|++++|..-.                  ...       
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  154 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS  154 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccc
Confidence             111 123467999999999986544   44556789999999999875300                  000       


Q ss_pred             ----------cccCCCccEEEEeeecc---ccceE----EEeCCCccEEEecccc-cc-----ceeeccCCCCccEEEee
Q 009796          226 ----------ISEAHKLKSLILRFTYQ---ELESV----EIAVPSLQQLELSFSR-VP-----RLLDVAECPHLRKLVLF  282 (525)
Q Consensus       226 ----------i~~l~~L~~L~l~~c~~---~l~~~----~~~~~~L~~L~l~~~~-~~-----~~~~~~~l~~L~~L~L~  282 (525)
                                +...+.++.+.++.+..   .....    ...-.....+....+. ..     ....+...+.++.+.+.
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~  234 (460)
T d1z7xw1         155 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG  234 (460)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred             hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchh
Confidence                      01135677777766540   01100    0112244556666554 11     11234566788888888


Q ss_pred             CCCCChhh----hhhhhcCCCCCcEEEecCccchhH-------hhhcCcccceEccccccc----h----hhhcccCCCc
Q 009796          283 LPHFNDQE----FHPLISKFPLLEDLSIISLETLER-------IMISSNRLMHLEVYNCSG----L----NRINVDAPNL  343 (525)
Q Consensus       283 ~~~~~~~~----~~~ll~~~~~Le~L~L~~c~~l~~-------~~~~~~~L~~L~l~~c~~----L----~~l~~~~p~L  343 (525)
                      .+.+....    ..........++.|+++++.....       .....+.++.+++++..-    +    +.+....+.|
T Consensus       235 ~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L  314 (460)
T d1z7xw1         235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL  314 (460)
T ss_dssp             SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred             hccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccc
Confidence            87765532    234455677888999888753211       112246777777776421    1    1222345678


Q ss_pred             ceEEEecCCCCc--------ccccCCCCceEEEEeeecCChhccccHHHHH-HhccccceEEEEEEeeeeeeeecccccc
Q 009796          344 VSFDFEDNPIPI--------VSTNAPCPLNVLFSNFGDIDTHWYLNLMEFI-GAFNQIGELHLSLNYKQVLFNIDEFRSC  414 (525)
Q Consensus       344 ~~l~~~g~~~~~--------~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~l-~~l~~L~~L~L~~~~~~~~~~lp~~~~~  414 (525)
                      +.+.+.++.+..        .....++|++|+++. +.+.......+...+ ...+.|++|+|+.|.+.... +. .+..
T Consensus       315 ~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~-N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~-~~-~l~~  391 (460)
T d1z7xw1         315 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS-CS-SLAA  391 (460)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH-HH-HHHH
T ss_pred             ccccccccchhhhhhhhcccccccccchhhhheee-ecccCcccchhhhhhhcccCCCCEEECCCCCCChHH-HH-HHHH
Confidence            888887776531        112367899999985 344433222233333 34677999999988765421 10 0000


Q ss_pred             CCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHh-hhccccceeecC
Q 009796          415 HPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLF-WIFYPKNLCLSP  463 (525)
Q Consensus       415 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~Ll-~~~~l~~l~l~~  463 (525)
                        .+...++|++|+|.+|..    ...-...+...+- ..+.++++.+.-
T Consensus       392 --~l~~~~~L~~L~Ls~N~i----~~~g~~~l~~~l~~~~~~L~~l~l~~  435 (460)
T d1z7xw1         392 --TLLANHSLRELDLSNNCL----GDAGILQLVESVRQPGCLLEQLVLYD  435 (460)
T ss_dssp             --HHHHCCCCCEEECCSSSC----CHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             --HHhcCCCCCEEECCCCcC----CHHHHHHHHHHHHhCCCccCEEECCC
Confidence              133457899999998832    2223444555553 234588998843

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.88  E-value=4e-09  Score=101.92  Aligned_cols=136  Identities=21%  Similarity=0.175  Sum_probs=86.0

Q ss_pred             HcCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCcc
Q 009796          133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (525)
Q Consensus       133 ~~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le  211 (525)
                      ..++++|+++.    ..-..+|..   .++|++|+|++|.++. |.   .+.+|+.|+++++.++.  +..   -.+.|+
T Consensus        37 ~~~l~~LdLs~----~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~l~~n~l~~--l~~---lp~~L~  101 (353)
T d1jl5a_          37 DRQAHELELNN----LGLSSLPEL---PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKA--LSD---LPPLLE  101 (353)
T ss_dssp             HHTCSEEECTT----SCCSCCCSC---CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC--CCS---CCTTCC
T ss_pred             HcCCCEEEeCC----CCCCCCCCC---CCCCCEEECCCCCCccccc---chhhhhhhhhhhcccch--hhh---hccccc
Confidence            35888888765    223456753   4689999999998886 33   35689999999987732  111   124699


Q ss_pred             EEEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCC
Q 009796          212 DLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPH  285 (525)
Q Consensus       212 ~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~  285 (525)
                      +|++++|....--....+++|+.|++.++.  +.......+.+..+.+..+.......++.++.++.+++..+.
T Consensus       102 ~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         102 YLGVSNNQLEKLPELQNSSFLKIIDVDNNS--LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred             cccccccccccccchhhhccceeecccccc--ccccccccccccchhhccccccccccccccccceeccccccc
Confidence            999998864222234457899999998775  222222345566666655543333445566666666665543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3.6e-10  Score=96.92  Aligned_cols=127  Identities=20%  Similarity=0.172  Sum_probs=67.3

Q ss_pred             cCCCCccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEE
Q 009796          158 FSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI  236 (525)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~  236 (525)
                      .++.+|++|+|++|.++. +..+..+++|++|+|++|.+..  +.. +..+++|++|++++|.. ..+..          
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~~-~~~l~~L~~L~ls~N~i-~~l~~----------   80 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LDG-FPLLRRLKTLLVNNNRI-CRIGE----------   80 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--ECC-CCCCSSCCEEECCSSCC-CEECS----------
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc--cCC-cccCcchhhhhcccccc-cCCCc----------
Confidence            455667777777777766 4444566777777777776531  111 34455555555555532 11110          


Q ss_pred             EeeeccccceEEEeCCCccEEEecccc-ccc--eeeccCCCCccEEEeeCCCCChhh--hhhhhcCCCCCcEEEec
Q 009796          237 LRFTYQELESVEIAVPSLQQLELSFSR-VPR--LLDVAECPHLRKLVLFLPHFNDQE--FHPLISKFPLLEDLSII  307 (525)
Q Consensus       237 l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~l~~L~~L~L~~~~~~~~~--~~~ll~~~~~Le~L~L~  307 (525)
                               .+...+++|+.|++++|. ...  ...+..+++|+.|++++|.++...  -..++..+|+|+.|+-.
T Consensus        81 ---------~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          81 ---------GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             ---------CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ---------cccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence                     001134555555555554 111  124556677777777777665421  12345566777766644

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=5.5e-10  Score=112.22  Aligned_cols=315  Identities=16%  Similarity=0.131  Sum_probs=187.5

Q ss_pred             CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCC------CCCCCCCCcccEEEeceeeechHHHHHHHhC--
Q 009796          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYVNDQMVQSLVRE--  206 (525)
Q Consensus       135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~--  206 (525)
                      +|+.|+++.  .......+...+..+++|++|+|++|.++.      ...+..+++|++|+|++|.+++.++..+...  
T Consensus         3 ~l~~ld~~~--~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQC--EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEES--CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeC--CcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            578888876  333333444445567899999999998764      2234678999999999999877666666543  


Q ss_pred             --CcCccEEEEeecCCCcee-------ecccCCCccEEEEeeec-c--ccce--------------EEE-----------
Q 009796          207 --CRVLEDLSFFYCFGLKRL-------RISEAHKLKSLILRFTY-Q--ELES--------------VEI-----------  249 (525)
Q Consensus       207 --c~~Le~L~L~~c~~l~~l-------~i~~l~~L~~L~l~~c~-~--~l~~--------------~~~-----------  249 (525)
                        .+.|++|+|++|.. +..       .+..+++|++|++++|. .  +...              ...           
T Consensus        81 ~~~~~L~~L~L~~n~i-t~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  159 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCL-TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  159 (460)
T ss_dssp             STTCCCCEEECTTSCC-BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             cCCCCCCEEECCCCCc-cccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhc
Confidence              45799999999863 321       13457899999998875 0  0000              000           


Q ss_pred             -------eCCCccEEEecccccc------ceeec-cCCCCccEEEeeCCCCChhh---hhhhhcCCCCCcEEEecCccch
Q 009796          250 -------AVPSLQQLELSFSRVP------RLLDV-AECPHLRKLVLFLPHFNDQE---FHPLISKFPLLEDLSIISLETL  312 (525)
Q Consensus       250 -------~~~~L~~L~l~~~~~~------~~~~~-~~l~~L~~L~L~~~~~~~~~---~~~ll~~~~~Le~L~L~~c~~l  312 (525)
                             ..+.++.+.++++...      ....+ ..-.....+.+..+.+....   ....+...+.++.+.+..+...
T Consensus       160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~  239 (460)
T d1z7xw1         160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  239 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence                   1234444444444300      00001 11123445566555544322   2334556678888888776431


Q ss_pred             h--------HhhhcCcccceEccccccch-------hhhcccCCCcceEEEecCCCC------c--cc-ccCCCCceEEE
Q 009796          313 E--------RIMISSNRLMHLEVYNCSGL-------NRINVDAPNLVSFDFEDNPIP------I--VS-TNAPCPLNVLF  368 (525)
Q Consensus       313 ~--------~~~~~~~~L~~L~l~~c~~L-------~~l~~~~p~L~~l~~~g~~~~------~--~~-~~~~~L~~l~l  368 (525)
                      .        ........++.++++++.--       .......+.+..+.++++.+.      +  .. .....|+.+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l  319 (460)
T d1z7xw1         240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV  319 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             ccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence            1        11222467888888876421       111134677888888877653      0  01 12457888888


Q ss_pred             EeeecCChhccccHHHHHHhccccceEEEEEEeeeeee--eeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHH
Q 009796          369 SNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLF--NIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEIL  446 (525)
Q Consensus       369 ~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~--~lp~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~  446 (525)
                      +. +.........+..++...++|++|+|+.|......  .+++.+     ......|++|.|..|.    ........+
T Consensus       320 ~~-~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l-----~~~~~~L~~L~Ls~n~----i~~~~~~~l  389 (460)
T d1z7xw1         320 KS-CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL-----GQPGSVLRVLWLADCD----VSDSSCSSL  389 (460)
T ss_dssp             TT-SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH-----TSTTCCCCEEECTTSC----CCHHHHHHH
T ss_pred             cc-cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhh-----hcccCCCCEEECCCCC----CChHHHHHH
Confidence            75 33444444456667788899999999987764321  011111     1124679999999883    333334556


Q ss_pred             HHhHhhhccccceeec
Q 009796          447 LDDLFWIFYPKNLCLS  462 (525)
Q Consensus       447 ~~~Ll~~~~l~~l~l~  462 (525)
                      ...+-.++.++.|.|.
T Consensus       390 ~~~l~~~~~L~~L~Ls  405 (460)
T d1z7xw1         390 AATLLANHSLRELDLS  405 (460)
T ss_dssp             HHHHHHCCCCCEEECC
T ss_pred             HHHHhcCCCCCEEECC
Confidence            6666666789999983

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.79  E-value=1.5e-09  Score=88.39  Aligned_cols=117  Identities=21%  Similarity=0.181  Sum_probs=65.2

Q ss_pred             cEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeeccc
Q 009796          164 TSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQE  243 (525)
Q Consensus       164 ~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~  243 (525)
                      |+|+|++|.++..+.+..+++|++|++++|.++.  ++..++.+++|++|++++|..-.--.+..+              
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l--------------   64 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVANL--------------   64 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCGGGTTC--------------
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccccCccccc--------------
Confidence            4677777777664456677777777777777632  333356677777777776643111112223              


Q ss_pred             cceEEEeCCCccEEEecccc-c--cceeeccCCCCccEEEeeCCCCChh--hhhhhhcCCCCCcEE
Q 009796          244 LESVEIAVPSLQQLELSFSR-V--PRLLDVAECPHLRKLVLFLPHFNDQ--EFHPLISKFPLLEDL  304 (525)
Q Consensus       244 l~~~~~~~~~L~~L~l~~~~-~--~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~ll~~~~~Le~L  304 (525)
                              ++|++|+++++. .  +....++.+++|+.|++++|.+++.  ....+...+|+|++|
T Consensus        65 --------~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          65 --------PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             --------SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             --------cccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence                    344444444443 1  1112456667777777777766542  123445556776665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.78  E-value=3.1e-09  Score=103.02  Aligned_cols=155  Identities=12%  Similarity=0.123  Sum_probs=76.5

Q ss_pred             cccCCCCccEEEecCCcCCC------CCCCCCCCcccEEEeceeeec------h---HHHHHHHhCCcCccEEEEeecCC
Q 009796          156 TIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYVN------D---QMVQSLVRECRVLEDLSFFYCFG  220 (525)
Q Consensus       156 ~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~------~---~~l~~ll~~c~~Le~L~L~~c~~  220 (525)
                      .+....+|+.|+|++|.+..      .......++|+.|+++++...      .   ..+...+..|++|++|+|++|..
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            33445556666666655432      123344566666666554320      1   11233345566666666666642


Q ss_pred             Cce----e--ecccCCCccEEEEeeecc---c-------cceE-----EEeCCCccEEEecccc-c-----cceeeccCC
Q 009796          221 LKR----L--RISEAHKLKSLILRFTYQ---E-------LESV-----EIAVPSLQQLELSFSR-V-----PRLLDVAEC  273 (525)
Q Consensus       221 l~~----l--~i~~l~~L~~L~l~~c~~---~-------l~~~-----~~~~~~L~~L~l~~~~-~-----~~~~~~~~l  273 (525)
                      -..    +  .+..+++|+.|++++|..   +       +...     ....+.|+.+.++++. .     .....+..+
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence            110    1  011345666666655530   0       0000     1134566777766654 1     111224456


Q ss_pred             CCccEEEeeCCCCChhhh----hhhhcCCCCCcEEEecCcc
Q 009796          274 PHLRKLVLFLPHFNDQEF----HPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       274 ~~L~~L~L~~~~~~~~~~----~~ll~~~~~Le~L~L~~c~  310 (525)
                      +.|+.|+++.+.++.+.+    ...+..+++|+.|+|+++.
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~  226 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT  226 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhccccccccc
Confidence            677777777777665432    2335566777777776653

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.9e-09  Score=84.53  Aligned_cols=42  Identities=31%  Similarity=0.554  Sum_probs=38.4

Q ss_pred             CCCCCCccCCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhh
Q 009796            2 DETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF   43 (525)
Q Consensus         2 ~~~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~l   43 (525)
                      ++.-..|.|+.||+||+.+||+||+.+|+++++.|||+|+.+
T Consensus        11 ~p~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             CchhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            344568999999999999999999999999999999999975

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.5e-09  Score=91.56  Aligned_cols=101  Identities=13%  Similarity=0.092  Sum_probs=69.5

Q ss_pred             CCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEE
Q 009796          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLS  214 (525)
Q Consensus       135 ~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~  214 (525)
                      ++++|+++.    .....++.....+++|++|+|++|.+...+.+..+++|++|++++|.+..- ...+..++++|++|+
T Consensus        19 ~lr~L~L~~----n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l-~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          19 RDRELDLRG----YKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELI   93 (162)
T ss_dssp             SCEEEECTT----SCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEE
T ss_pred             cCcEEECCC----CCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCC-Cccccccccccccce
Confidence            578888765    233455655566899999999999988744578899999999999988321 123456789999999


Q ss_pred             EeecCCC--cee-ecccCCCccEEEEeee
Q 009796          215 FFYCFGL--KRL-RISEAHKLKSLILRFT  240 (525)
Q Consensus       215 L~~c~~l--~~l-~i~~l~~L~~L~l~~c  240 (525)
                      +++|..-  ..+ .+..+++|+.|++++|
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             eccccccccccccccccccccchhhcCCC
Confidence            9998631  111 2334455555555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.68  E-value=2.4e-10  Score=101.65  Aligned_cols=146  Identities=18%  Similarity=0.207  Sum_probs=88.7

Q ss_pred             CeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEE
Q 009796          136 VKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSF  215 (525)
Q Consensus       136 l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L  215 (525)
                      ++.+++..  ..+....++.++..+++|++|+|++|.+...+.+..+++|++|+|++|.++.  ++.+...++.|++|++
T Consensus        25 ~~~~~l~~--~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          25 AEKVELHG--MIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWI  100 (198)
T ss_dssp             CSCEECCB--CCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEEC
T ss_pred             cceeeeec--ccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--cccccccccccccccc
Confidence            44455443  2333455667777888999999999888774456778899999999998842  2334445568888888


Q ss_pred             eecCCCcee-ecccCCCccEEEEeeec-cccceEEEeCCCccEEEeccccccceeeccCCCCccEEEeeCCCCChhh---
Q 009796          216 FYCFGLKRL-RISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQE---  290 (525)
Q Consensus       216 ~~c~~l~~l-~i~~l~~L~~L~l~~c~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~---  290 (525)
                      ++|.. ..+ .+..+++|+.|++++|. ..+..+                    ..++.+++|+.|++++|.+....   
T Consensus       101 ~~N~i-~~l~~~~~l~~L~~L~L~~N~i~~~~~~--------------------~~l~~l~~L~~L~L~~N~l~~~~~~~  159 (198)
T d1m9la_         101 SYNQI-ASLSGIEKLVNLRVLYMSNNKITNWGEI--------------------DKLAALDKLEDLLLAGNPLYNDYKEN  159 (198)
T ss_dssp             SEEEC-CCHHHHHHHHHSSEEEESEEECCCHHHH--------------------HHHTTTTTCSEEEECSSHHHHHHCTT
T ss_pred             ccccc-cccccccccccccccccccchhcccccc--------------------ccccCCCccceeecCCCccccCcccc
Confidence            88753 222 23345667777776664 111111                    13455566666666655443210   


Q ss_pred             ------hhhhhcCCCCCcEEEe
Q 009796          291 ------FHPLISKFPLLEDLSI  306 (525)
Q Consensus       291 ------~~~ll~~~~~Le~L~L  306 (525)
                            -..++..+|+|+.|+-
T Consensus       160 ~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         160 NATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             TTHHHHHHHHHHHCSSCCEESS
T ss_pred             cchhhHHHHHHHHCCCcCEeCC
Confidence                  1223567788887763

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=1.9e-09  Score=84.04  Aligned_cols=41  Identities=27%  Similarity=0.434  Sum_probs=37.2

Q ss_pred             CCccCCCCCHHHHHHHhcCCChHHHHHHhhhchhhhhhhcc
Q 009796            6 DADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTS   46 (525)
Q Consensus         6 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSrrWr~lw~~   46 (525)
                      ..|.|+.||+||+.+||+||+.+|++++++|||+|+++..+
T Consensus         2 k~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           2 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             CCCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            36899999999999999999999999999999999976443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=5.1e-08  Score=88.97  Aligned_cols=89  Identities=13%  Similarity=0.178  Sum_probs=50.9

Q ss_pred             ccCCccccCCCCccEEEecCCcCCC-C-CCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee---
Q 009796          151 NALPQTIFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---  225 (525)
Q Consensus       151 ~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~---  225 (525)
                      ..+|..++  +++++|+|++|.+.. + ..+.++++|++|++++|.+....-...+.+++.+++|.+..+..+....   
T Consensus        21 ~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          21 TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             SSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc
Confidence            34555443  366777777776665 3 3456677777777777654211111224456777777766655544433   


Q ss_pred             cccCCCccEEEEeeec
Q 009796          226 ISEAHKLKSLILRFTY  241 (525)
Q Consensus       226 i~~l~~L~~L~l~~c~  241 (525)
                      +.++++|+.|++.++.
T Consensus        99 ~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTG  114 (242)
T ss_dssp             EECCTTCCEEEEESCC
T ss_pred             ccccccccccccchhh
Confidence            2355677777777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.7e-07  Score=85.38  Aligned_cols=140  Identities=15%  Similarity=0.033  Sum_probs=84.6

Q ss_pred             cEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceee---cccCCCccEEEEee
Q 009796          164 TSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKLKSLILRF  239 (525)
Q Consensus       164 ~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~---i~~l~~L~~L~l~~  239 (525)
                      ++++.++..++. |..+  .+++++|+|++|.++.- -...+.++++|++|++++|.....+.   +.++++++.+.+..
T Consensus        11 ~~i~c~~~~l~~iP~~l--~~~l~~L~Ls~n~i~~l-~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCS--CSCCSEEEEESCCCCEE-CTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCC--CCCCCEEECcCCcCCcc-ChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            567777776665 4332  35899999999987321 12246789999999999997655443   34678889998887


Q ss_pred             eccccceE----EEeCCCccEEEeccccccceeeccC---CCCccEEEeeCCCCChhhhhhhhcCC-CCCcEEEecC
Q 009796          240 TYQELESV----EIAVPSLQQLELSFSRVPRLLDVAE---CPHLRKLVLFLPHFNDQEFHPLISKF-PLLEDLSIIS  308 (525)
Q Consensus       240 c~~~l~~~----~~~~~~L~~L~l~~~~~~~~~~~~~---l~~L~~L~L~~~~~~~~~~~~ll~~~-~~Le~L~L~~  308 (525)
                      +. .+..+    ..++++|++++++++.......+..   ++.+..+...++.+..-. ...+.++ ..++.|++.+
T Consensus        88 ~n-~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~-~~~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          88 AN-NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-RNSFVGLSFESVILWLNK  162 (242)
T ss_dssp             CT-TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC-TTSSTTSBSSCEEEECCS
T ss_pred             cc-cccccccccccccccccccccchhhhccccccccccccccccccccccccccccc-ccccccccccceeeeccc
Confidence            65 33222    2367888888888876211122333   334444444444444321 1222222 3666677665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.56  E-value=3.4e-08  Score=95.43  Aligned_cols=154  Identities=17%  Similarity=0.108  Sum_probs=88.6

Q ss_pred             ccCCCCccEEEecCCcCCC------------CCCCCCCCcccEEEeceeeechH---HHHHHHhCCcCccEEEEeecCCC
Q 009796          157 IFSAKLLTSLKLFGCKLEQ------------PSHCANLQSLKKLSLDEVYVNDQ---MVQSLVRECRVLEDLSFFYCFGL  221 (525)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~------------~~~~~~l~~L~~L~L~~~~~~~~---~l~~ll~~c~~Le~L~L~~c~~l  221 (525)
                      +...++|+.|+++++....            ...+..+++|+.|+|++|.+++.   .+...+..++.|++|++++|..-
T Consensus        55 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1          55 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccc
Confidence            3445666666666553321            01123456677777777666332   23344556677777777666431


Q ss_pred             c-----------eee----cccCCCccEEEEeeec---cccceE---EEeCCCccEEEecccc-cc------ceeeccCC
Q 009796          222 K-----------RLR----ISEAHKLKSLILRFTY---QELESV---EIAVPSLQQLELSFSR-VP------RLLDVAEC  273 (525)
Q Consensus       222 ~-----------~l~----i~~l~~L~~L~l~~c~---~~l~~~---~~~~~~L~~L~l~~~~-~~------~~~~~~~l  273 (525)
                      .           ...    ....+.|+.+.+.++.   .+...+   ...++.|++|++++|. ..      ....+..+
T Consensus       135 ~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~  214 (344)
T d2ca6a1         135 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC  214 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred             ccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcch
Confidence            0           000    0124567777776654   111111   1146778888887776 11      12235677


Q ss_pred             CCccEEEeeCCCCChhh---hhhhhcCCCCCcEEEecCcc
Q 009796          274 PHLRKLVLFLPHFNDQE---FHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       274 ~~L~~L~L~~~~~~~~~---~~~ll~~~~~Le~L~L~~c~  310 (525)
                      ++|+.|+|+++.+++..   +...+..+++|++|+|++|.
T Consensus       215 ~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             hhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence            88888888888877643   34456788888888888875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.50  E-value=5.9e-07  Score=86.16  Aligned_cols=75  Identities=16%  Similarity=0.121  Sum_probs=48.8

Q ss_pred             cCCeEEEEEeecCCCCcccCCccccCCCCccEEEecCCcCCCCCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEE
Q 009796          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (525)
Q Consensus       134 ~~l~~L~l~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L  213 (525)
                      .++++|+++.  +  .-..+|..   ..+|+.|++++|.+.....  -.++|++|++++|.+..  ++. .+.+++|++|
T Consensus        58 ~~L~~L~Ls~--N--~l~~lp~~---~~~L~~L~l~~n~l~~l~~--lp~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L  125 (353)
T d1jl5a_          58 PHLESLVASC--N--SLTELPEL---PQSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEK--LPE-LQNSSFLKII  125 (353)
T ss_dssp             TTCSEEECCS--S--CCSSCCCC---CTTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEE
T ss_pred             CCCCEEECCC--C--CCcccccc---hhhhhhhhhhhcccchhhh--hcccccccccccccccc--ccc-hhhhccceee
Confidence            4788888765  2  23356654   3578888888887765111  12468888888887732  222 3567888888


Q ss_pred             EEeecCC
Q 009796          214 SFFYCFG  220 (525)
Q Consensus       214 ~L~~c~~  220 (525)
                      ++.++..
T Consensus       126 ~l~~~~~  132 (353)
T d1jl5a_         126 DVDNNSL  132 (353)
T ss_dssp             ECCSSCC
T ss_pred             ccccccc
Confidence            8877653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.50  E-value=6.3e-09  Score=92.15  Aligned_cols=109  Identities=19%  Similarity=0.238  Sum_probs=65.9

Q ss_pred             CCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEE
Q 009796          178 HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQL  257 (525)
Q Consensus       178 ~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L  257 (525)
                      .+..+++|++|+|++|.+..  +.. +.++++|++|+|++|.. .                    .++.+....++|+.|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~i-~--------------------~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNLI-K--------------------KIENLDAVADTLEEL   98 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEEE-C--------------------SCSSHHHHHHHCCEE
T ss_pred             HHhcccccceeECcccCCCC--ccc-ccCCccccChhhccccc-c--------------------ccccccccccccccc
Confidence            34556666777776666632  111 34455666666665531 1                    111111123456666


Q ss_pred             EeccccccceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796          258 ELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       258 ~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      +++++.......+..+++|+.|++++|.+++-.....+..+++|+.|+|++++
T Consensus        99 ~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          99 WISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ECSEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccccccccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            66666521122467788999999999998873223457899999999999865

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=1.7e-07  Score=75.84  Aligned_cols=101  Identities=17%  Similarity=0.140  Sum_probs=63.1

Q ss_pred             cEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEEEecccccc
Q 009796          186 KKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVP  265 (525)
Q Consensus       186 ~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~~~  265 (525)
                      |.|+|++|.++.  +.. +..+++|++|++++|.. +.+                    +.....+++|+.|+++++...
T Consensus         1 R~L~Ls~n~l~~--l~~-l~~l~~L~~L~ls~N~l-~~l--------------------p~~~~~l~~L~~L~l~~N~i~   56 (124)
T d1dcea3           1 RVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRL-RAL--------------------PPALAALRCLEVLQASDNALE   56 (124)
T ss_dssp             SEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCC-CCC--------------------CGGGGGCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCC--Ccc-cccCCCCCEEECCCCcc-Ccc--------------------hhhhhhhhccccccccccccc
Confidence            567777777632  222 45566677777766542 222                    111113556666666666622


Q ss_pred             ceeeccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCcc
Q 009796          266 RLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (525)
Q Consensus       266 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c~  310 (525)
                      ....++.+++|+.|++++|.+++-.....+..+++|+.|++++..
T Consensus        57 ~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ccCccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCc
Confidence            223578899999999999998863223446789999999998743

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.38  E-value=8.1e-08  Score=84.39  Aligned_cols=65  Identities=18%  Similarity=0.152  Sum_probs=30.0

Q ss_pred             ccCCccccCCCCccEEEecCCcCCC---CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeec
Q 009796          151 NALPQTIFSAKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYC  218 (525)
Q Consensus       151 ~~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c  218 (525)
                      ..+|..+.  +++++|+|++|.++.   ...+.++++|+.|+|++|.+..- ....+...+.|++|+|++|
T Consensus        21 ~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          21 KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSC
T ss_pred             CccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccc
Confidence            34444432  455566666665542   23344555555555555554211 1122334444444444444

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=6.2e-08  Score=77.77  Aligned_cols=38  Identities=26%  Similarity=0.614  Sum_probs=35.4

Q ss_pred             CCccCCCCC----HHHHHHHhcCCChHHHHHHhhhchhhhhh
Q 009796            6 DADHISDLP----TFIIHHIMSFLSPKDVVRTGILSTTWRKF   43 (525)
Q Consensus         6 ~~D~is~LP----d~iL~~Ils~L~~~d~~r~s~vSrrWr~l   43 (525)
                      ..|.|+.||    |||+.+|||||+.+|++++++|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            469999999    59999999999999999999999999975

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.24  E-value=3.2e-07  Score=80.44  Aligned_cols=122  Identities=16%  Similarity=0.073  Sum_probs=91.2

Q ss_pred             ccEEEecCCcCCC-CCCCCCCCcccEEEeceeeechHHHHHHHhCCcCccEEEEeecCCCce--eecccCCCccEEEEee
Q 009796          163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR--LRISEAHKLKSLILRF  239 (525)
Q Consensus       163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c~~Le~L~L~~c~~l~~--l~i~~l~~L~~L~l~~  239 (525)
                      .+.++.+++.++. |..+  .+++++|+|++|.++.......+.++++|++|+|++|.....  -....+++|+.|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4678888888876 5443  368999999999884322234467899999999998865332  2344578999999999


Q ss_pred             eccccceE---EE-eCCCccEEEecccc--ccceeeccCCCCccEEEeeCCCCCh
Q 009796          240 TYQELESV---EI-AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFND  288 (525)
Q Consensus       240 c~~~l~~~---~~-~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~  288 (525)
                      |.  +..+   .+ +.++|++|+++++.  ...+..|..+++|++|+|+++.+..
T Consensus        88 N~--l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          88 NK--IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CC--CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cc--ccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            95  3333   22 58999999999998  3334468899999999999998764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.1e-05  Score=65.87  Aligned_cols=13  Identities=31%  Similarity=0.307  Sum_probs=7.4

Q ss_pred             CccEEEeeCCCCC
Q 009796          275 HLRKLVLFLPHFN  287 (525)
Q Consensus       275 ~L~~L~L~~~~~~  287 (525)
                      +|+.|+|++|.+.
T Consensus       104 ~l~~L~L~~Np~~  116 (156)
T d2ifga3         104 SLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCSSCCC
T ss_pred             cccccccCCCccc
Confidence            4566666665553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=7.7e-05  Score=62.25  Aligned_cols=39  Identities=15%  Similarity=0.143  Sum_probs=24.2

Q ss_pred             eccCCCCccEEEeeCCCCChhhhhhhhcCCCCCcEEEecCc
Q 009796          269 DVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL  309 (525)
Q Consensus       269 ~~~~l~~L~~L~L~~~~~~~~~~~~ll~~~~~Le~L~L~~c  309 (525)
                      .|..+++|+.|+|++|.++.- ....+.. ..|++|+|++.
T Consensus        75 ~f~~l~~L~~L~Ls~N~l~~l-~~~~~~~-~~l~~L~L~~N  113 (156)
T d2ifga3          75 AFHFTPRLSRLNLSFNALESL-SWKTVQG-LSLQELVLSGN  113 (156)
T ss_dssp             GGGSCSCCCEEECCSSCCSCC-CSTTTCS-CCCCEEECCSS
T ss_pred             cccccccccceeccCCCCccc-Chhhhcc-ccccccccCCC
Confidence            466677777777777776641 2223333 35888888764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.17  E-value=0.00011  Score=62.07  Aligned_cols=40  Identities=10%  Similarity=-0.051  Sum_probs=21.8

Q ss_pred             ccCCCCccEEEeeCCCCC---hh---hhhhhhcCCCCCcEEEecCc
Q 009796          270 VAECPHLRKLVLFLPHFN---DQ---EFHPLISKFPLLEDLSIISL  309 (525)
Q Consensus       270 ~~~l~~L~~L~L~~~~~~---~~---~~~~ll~~~~~Le~L~L~~c  309 (525)
                      +...++|++|+++++.+.   +.   .+...+...+.|+.|++++.
T Consensus        96 L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            445566666766655322   22   23444555566777766654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0001  Score=61.87  Aligned_cols=88  Identities=24%  Similarity=0.204  Sum_probs=43.6

Q ss_pred             HHHHHhCCcCccEEEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccEEEecccc-cc-ceeeccCCCCcc
Q 009796          200 VQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VP-RLLDVAECPHLR  277 (525)
Q Consensus       200 l~~ll~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~l~~L~  277 (525)
                      +..+...|++|++|+|++|.. +.+..                 +......+++|+.|+++++. .. .........+|+
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i-~~l~~-----------------~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~  118 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRL-YRLDD-----------------MSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE  118 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCC-CCCSG-----------------GGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCS
T ss_pred             hHHHHHhCCCCCEeeCCCccc-cCCch-----------------hHHHHhhCCcccccccccCccccchhhhhhhccccc
Confidence            455556788889888888853 11110                 00001123444455555444 11 111122234566


Q ss_pred             EEEeeCCCCCh------hhhhhhhcCCCCCcEEE
Q 009796          278 KLVLFLPHFND------QEFHPLISKFPLLEDLS  305 (525)
Q Consensus       278 ~L~L~~~~~~~------~~~~~ll~~~~~Le~L~  305 (525)
                      .|++.+|.++.      .....++..+|+|+.|+
T Consensus       119 ~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             eeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            66666665543      12334566677777664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.60  E-value=0.00039  Score=58.35  Aligned_cols=113  Identities=10%  Similarity=0.080  Sum_probs=58.2

Q ss_pred             CCCcccEEEecee-eechHHHHHH---HhCCcCccEEEEeecCCCceeecccCCCccEEEEeeeccccceEEEeCCCccE
Q 009796          181 NLQSLKKLSLDEV-YVNDQMVQSL---VRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQ  256 (525)
Q Consensus       181 ~l~~L~~L~L~~~-~~~~~~l~~l---l~~c~~Le~L~L~~c~~l~~l~i~~l~~L~~L~l~~c~~~l~~~~~~~~~L~~  256 (525)
                      +.|+|++|+|+++ .+++..+..+   +..+++|++|++++|.. ..-.+.               .+.......++++.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l-~~~~~~---------------~L~~~l~~~~~l~~   78 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS-NDPVAF---------------ALAEMLKVNNTLKS   78 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC-CHHHHH---------------HHHHHHHHCSSCCE
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcc-cHHHHH---------------HHHHHHhhcccchh
Confidence            4567777777663 3444444333   34566677777766632 110000               00000012345555


Q ss_pred             EEecccc------ccceeeccCCCCccEEEe--eCCCCChhh---hhhhhcCCCCCcEEEecCc
Q 009796          257 LELSFSR------VPRLLDVAECPHLRKLVL--FLPHFNDQE---FHPLISKFPLLEDLSIISL  309 (525)
Q Consensus       257 L~l~~~~------~~~~~~~~~l~~L~~L~L--~~~~~~~~~---~~~ll~~~~~Le~L~L~~c  309 (525)
                      +++.++.      ......+...++|+.++|  +.+.+.++.   +...+...++|++|++...
T Consensus        79 l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          79 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             hhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            5555544      112234556677777666  345566543   3444567788888888764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00016  Score=60.73  Aligned_cols=60  Identities=22%  Similarity=0.122  Sum_probs=39.1

Q ss_pred             CCCCccEEEecCCcCCC-C---CCCCCCCcccEEEeceeee-chHHHHHHHhCCcCccEEEEeecCC
Q 009796          159 SAKLLTSLKLFGCKLEQ-P---SHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFG  220 (525)
Q Consensus       159 ~~~~L~~L~L~~~~l~~-~---~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~c~~Le~L~L~~c~~  220 (525)
                      .+++|++|+|++|.++. .   ..+..+++|+.|+|++|.+ +-..+.. + ..+.|++|++.+|..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~Npl  127 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGNSL  127 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTSTT
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCCCc
Confidence            46778888888887765 1   2234678888888888887 3333332 2 344678888877754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.24  E-value=0.0007  Score=56.87  Aligned_cols=60  Identities=17%  Similarity=0.222  Sum_probs=30.1

Q ss_pred             CCCccEEEecCC-cCCC------CCCCCCCCcccEEEeceeeechH---HHHHHHhCCcCccEEEEeecC
Q 009796          160 AKLLTSLKLFGC-KLEQ------PSHCANLQSLKKLSLDEVYVNDQ---MVQSLVRECRVLEDLSFFYCF  219 (525)
Q Consensus       160 ~~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~L~~~~~~~~---~l~~ll~~c~~Le~L~L~~c~  219 (525)
                      .++|++|+|+++ .+..      ...+...++|++|+|++|.+++.   .+...+..++.|++|+|++|.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            355666666553 2322      11223445566666666655332   233344555666666666653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.16  E-value=0.027  Score=46.46  Aligned_cols=40  Identities=3%  Similarity=0.090  Sum_probs=22.1

Q ss_pred             CCCCceEEEEee-ecCChhccccHHHHHHhccccceEEEEE
Q 009796          360 APCPLNVLFSNF-GDIDTHWYLNLMEFIGAFNQIGELHLSL  399 (525)
Q Consensus       360 ~~~L~~l~l~~~-~~~~~~~~~~l~~~l~~l~~L~~L~L~~  399 (525)
                      .++|+.++|+.. +.++......+...+...++|++|+++.
T Consensus       101 ~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_         101 NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             CccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            455666555421 2333444444566667777777776653