Citrus Sinensis ID: 009797
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SKR2 | 541 | Synaptotagmin-1 OS=Arabid | yes | no | 0.944 | 0.916 | 0.773 | 0.0 | |
| B6ETT4 | 537 | Synaptotagmin-2 OS=Arabid | no | no | 0.956 | 0.934 | 0.706 | 0.0 | |
| Q7XA06 | 540 | Synaptotagmin-3 OS=Arabid | no | no | 0.923 | 0.898 | 0.543 | 1e-151 | |
| Q8L706 | 560 | Synaptotagmin-5 OS=Arabid | no | no | 0.887 | 0.832 | 0.308 | 5e-62 | |
| A0JJX5 | 569 | Synaptotagmin-4 OS=Arabid | no | no | 0.899 | 0.829 | 0.307 | 6e-56 | |
| Q5RAG2 | 1104 | Extended synaptotagmin-1 | yes | no | 0.878 | 0.417 | 0.251 | 1e-30 | |
| Q3U7R1 | 1092 | Extended synaptotagmin-1 | yes | no | 0.862 | 0.414 | 0.253 | 1e-30 | |
| Q5M7N9 | 889 | Extended synaptotagmin-3 | no | no | 0.542 | 0.320 | 0.296 | 3e-30 | |
| Q3TZZ7 | 845 | Extended synaptotagmin-2 | no | no | 0.784 | 0.487 | 0.249 | 4e-30 | |
| A0FGR8 | 921 | Extended synaptotagmin-2 | yes | no | 0.775 | 0.441 | 0.251 | 8e-30 |
| >sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/498 (77%), Positives = 439/498 (88%), Gaps = 2/498 (0%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG STI GFCGFGVGIS GLVIGY LF+Y P DVK+PEIR + ++D + + +MLPEIP
Sbjct: 1 MGFFSTILGFCGFGVGISLGLVIGYVLFVYLLPNDVKDPEIRSIADQDPKAMLRMLPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LWVK PD+DRVDW+N+FLE MWPYLDKAICKTAKNIAKPII EQIPKYKI+SVEFETLTL
Sbjct: 61 LWVKNPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFETLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPPTFQGMKVY+TDEKELIMEPCLKWAANPN+ + +KAFGLKATVQVVDLQVFAQPRI
Sbjct: 121 GSLPPTFQGMKVYLTDEKELIMEPCLKWAANPNILVAIKAFGLKATVQVVDLQVFAQPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
TLKPLVP+FPCFANIYVSLMEKPHVDFGLKL GADLMSIPGLYRFVQE IK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANMYLW 240
Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
PKTL VPILDP+KA+RRPVGI+HVKVV+A+ L+KKDL+G +DP+VK+K++EDK+PSKKTT
Sbjct: 241 PKTLVVPILDPAKAFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSEDKIPSKKTT 300
Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
VKHKNLNPEWNEE+ F+VRDP++Q +E +VYDWEQVG +KMGMNV+ LKE+ P+E
Sbjct: 301 VKHKNLNPEWNEEFKFSVRDPQTQVLEFSVYDWEQVGNPEKMGMNVLALKEMVPDEHKAF 360
Query: 361 TLDLLKNMDLN-DGQ-NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGG 418
TL+L K +D DGQ +K RG+L VE +YKPF EE++PK FEE+Q VQKAPE TPA GG
Sbjct: 361 TLELRKTLDGGEDGQPPDKYRGKLEVELLYKPFTEEEMPKGFEETQAVQKAPEGTPAAGG 420
Query: 419 LLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDR 478
+LVVIVH A+DVEGKHHTNPY RI F+GEERKTKHVKKNRDPRW EEF FMLEEPP ++
Sbjct: 421 MLVVIVHSAEDVEGKHHTNPYVRIYFKGEERKTKHVKKNRDPRWNEEFTFMLEEPPVREK 480
Query: 479 LHVEVCSVSSRIGLLHPK 496
LHVEV S SSRIGLLHPK
Sbjct: 481 LHVEVLSTSSRIGLLHPK 498
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Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata. Arabidopsis thaliana (taxid: 3702) |
| >sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/504 (70%), Positives = 431/504 (85%), Gaps = 2/504 (0%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG+ISTI G GFG G + G+VIGY+LFIYFQ TDV++PEI+PLVE DSET+ M PEIP
Sbjct: 1 MGIISTILGVIGFGFGTTIGIVIGYYLFIYFQSTDVEDPEIKPLVELDSETIATMFPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
+WVK PD+DR+DWLNK + MWPY+DKAICK AK+IAKPIIAEQIP YKI+SVEFE LTL
Sbjct: 61 MWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPP+FQGMKVY TD+KE+IME +KWA NPN+ + KAFGLKATVQV+DLQV+A PRI
Sbjct: 121 GSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKAFGLKATVQVIDLQVYATPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
TLKPLVP+FPCFANI+VSLM+KP VDFGLKL+GAD+M+IPGLYRFVQE+IK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYLW 240
Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
PKTL V I+DPSKA ++PVG+L VKV+KA+ LKKKDLLG SDPYVKL ++ DK+P KKT
Sbjct: 241 PKTLNVQIMDPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGKKTV 300
Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
VKH NLNPEWNEE++ V++PESQ ++L VYDWEQVGKHDK+GMNV+ LK+LTPEEP +
Sbjct: 301 VKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEPKLM 360
Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
TL+LLK+M+ + +EKSRGQLVVE YKPFK++D+P++ ++ V+KAPE TP+ GGLL
Sbjct: 361 TLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPNAVEKAPEGTPSTGGLL 420
Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
VVIVHEA+D+EGK+HTNP R+LFRGEERKTK VKKNR+PRW+E+FQF L+EPP ND+LH
Sbjct: 421 VVIVHEAEDLEGKYHTNPSVRLLFRGEERKTKRVKKNREPRWDEDFQFPLDEPPINDKLH 480
Query: 481 VEVCSVSSRIGLLHPKVLFQFYFI 504
VEV S SSR L+HPK + I
Sbjct: 481 VEVISSSSR--LIHPKETLGYVVI 502
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May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 535 bits (1377), Expect = e-151, Method: Compositional matrix adjust.
Identities = 265/488 (54%), Positives = 355/488 (72%), Gaps = 3/488 (0%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG +++ G GF +GI GL++G+F+ IY QP+ + P RPLVE L +LP+IP
Sbjct: 1 MGFFTSVLGIIGFVIGIPIGLILGFFVLIYSQPSHQEYPPARPLVETSISVLLDLLPDIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LW+K PDY+RVDW NKF+ MWPYLDKA+C ++ +P+ A+ I + IES+EFE L+L
Sbjct: 61 LWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
GTLPPT G+K Y T+EKEL+ EP +KWA NPN+ + +K L+ VQ+VDLQ FA R+
Sbjct: 121 GTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKVLSLRIRVQLVDLQFFAIVRV 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
LKPL+P FPCF + VSLMEKPHVDFGLK++G DLMSIPGLYR+VQE IK QV++MY W
Sbjct: 181 ALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYHW 240
Query: 241 PKTLEVPILDPSKA-YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKT 299
P+ LE+PILD S A ++PVG+LHV +++A NL KKDLLG SDPYVKL +T +KLP+KKT
Sbjct: 241 PQVLEIPILDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKT 300
Query: 300 TVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSV 359
T+K +NLNPEWNE + V+DP SQ ++L V+DW++VG HD++GM ++PL+++ P E
Sbjct: 301 TIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGERKE 360
Query: 360 KTLDLLKNMD-LNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGG 418
LDL+KN + + D ++K RG+L V+ Y PF+EE + + E + ++ + G
Sbjct: 361 FNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESIKRRKESREEKSSEDDDFLSQAG 420
Query: 419 LLVVIVHEAQDVEG-KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTND 477
LL V V A+DVEG K H+NPYA +LFRGE++KTK +KK RDPRW EEFQF LEEPP +
Sbjct: 421 LLSVAVQSAKDVEGKKKHSNPYAVVLFRGEKKKTKMLKKTRDPRWNEEFQFTLEEPPVKE 480
Query: 478 RLHVEVCS 485
+ VEV S
Sbjct: 481 SIRVEVMS 488
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (609), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 157/509 (30%), Positives = 257/509 (50%), Gaps = 43/509 (8%)
Query: 12 GFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPE----------IPL 61
GF VG+ GL++G + I F + ++R + +M E P
Sbjct: 2 GFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYPS 61
Query: 62 WVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLG 121
WV + ++ WLN L +WPY+D+A + K +P++ + P + S+ F LTLG
Sbjct: 62 WVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAI-VASLTFSKLTLG 120
Query: 122 TLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAF-GLKATVQVVDLQVFAQPRI 180
T+ P F G+ V D+ + +E ++W NPN+ +GVK G+ +QV ++ R+
Sbjct: 121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
+PLV FPCF + VSL EK +DF LK+VG D+ +IPGL ++E I+ V + W
Sbjct: 181 IFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITW 240
Query: 241 PKTLEVPIL--DPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK 298
P +PI+ D S +PVG+L VK+V+A NL KDL+G SDP+ K+ I + +K+
Sbjct: 241 PVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKR 300
Query: 299 TTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS 358
+ + +LNP WNE + F V D +Q + + +YD E V + +G + L EL P +
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVK 360
Query: 359 VKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK-----------------EEDLPKSFE 401
L L+K++++ ++ K+RG++ +E +Y P+ E L
Sbjct: 361 DVWLKLVKDLEIQ--RDTKNRGEVHLELLYIPYGSGNGIVNPFVTSSMTSLERVLKNDTT 418
Query: 402 ESQTVQKAPENTPAGGGLLVVIVHEA-----QDVEGKHHTNPYARILFR--GEERKTKHV 454
+ + G+L V V A QD+ GK +PY + + G + KT+ V
Sbjct: 419 DEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGK--ADPYVVLSMKKSGAKSKTRVV 476
Query: 455 KKNRDPRWEEEFQFMLEEPPTNDRLHVEV 483
+ +P W + F F++E+ +D L +EV
Sbjct: 477 NDSLNPVWNQTFDFVVED-GLHDMLVLEV 504
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 158/514 (30%), Positives = 260/514 (50%), Gaps = 42/514 (8%)
Query: 7 IFGFCGFGVGISSGLVIGYFLFIYFQPTDVKN--PEIRPLVERDSETLQQMLPE--IPLW 62
+FG G+ +S GLV+ + + + T + I + +++LP P W
Sbjct: 4 LFGLF-IGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYPSW 62
Query: 63 VKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGT 122
V +++WLN LE +WPY+++A + K+ +P++ + P + S++F TLGT
Sbjct: 63 VVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAM-LASLKFSKFTLGT 121
Query: 123 LPPTFQGMKVYVTDE--KELIMEPCLKWAANPNVTIGVKAF-GLKATVQVVDLQVFAQPR 179
+ P F G+ + ++ + ME ++W NP + + VK G+ ++V ++ R
Sbjct: 122 VAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVFR 181
Query: 180 ITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYL 239
+ KPLV FPCF + SL EK +DF LK++G +L SIPG+ ++E I+ + +
Sbjct: 182 LIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSIT 241
Query: 240 WPKTLEVPIL--DPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK 297
WP +PIL D S +PVG L VKVV+A +L KD++G SDPY + I +K
Sbjct: 242 WPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRTK 301
Query: 298 KTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEP 357
KT +LNP WNE + F V D +Q + + V+D E VG +G VPL EL P +
Sbjct: 302 KTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGKV 361
Query: 358 SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF-KEEDLPKSF--EESQTVQK---APE 411
L L+K++++ ++ K+RGQ+ +E +Y P KE L F + S T+ + PE
Sbjct: 362 KDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYSLTILEKVLKPE 419
Query: 412 NTPAGG-----------------GLLVVIVHEAQD---VEGKHHTNPYARILFRGEERKT 451
+ + G+L V V A+D V+ + + I + E K+
Sbjct: 420 SEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFVVITLKKSETKS 479
Query: 452 KH--VKKNRDPRWEEEFQFMLEEPPTNDRLHVEV 483
K V + +P W + F F++E+ +D L +EV
Sbjct: 480 KTRVVPDSLNPVWNQTFDFVVED-ALHDLLTLEV 512
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5RAG2|ESYT1_PONAB Extended synaptotagmin-1 OS=Pongo abelii GN=ESYT1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 128/508 (25%), Positives = 226/508 (44%), Gaps = 47/508 (9%)
Query: 10 FCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLV----------ERDSETLQQMLPEI 59
+ VG+S G V+ + L +Y V++ + R L + ++TL E+
Sbjct: 69 YLAGAVGLSVGFVL-FGLALYLGWRRVRDEKERSLRAARQLLDDEEQLTAKTLYMSHREL 127
Query: 60 PLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLT 119
P WV PD ++ +WLNK + +WP+L + + K P + P +++ F +
Sbjct: 128 PAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNP--HLQTFTFTRVE 185
Query: 120 LGTLPPTFQGMKVYVTDEKE-LIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQP 178
LG P G+KV+ KE ++++ + + + + + VK + KA V+ +Q+
Sbjct: 186 LGEKPLRIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVK--GMQLHGVL 243
Query: 179 RITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMY 238
R+ L+PL+ P + + + +P +D + +L+ IPGL +I +A
Sbjct: 244 RVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIAAFL 302
Query: 239 LWPKTLEVPI---LDPSKAYRRPV--GILHVKVVKAMNLKKKD------LLGASDPYVKL 287
+ P L VP+ L R P+ GI+ + ++ A L KD + G SDPY +
Sbjct: 303 VLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLTSKDKYVKGLIEGKSDPYALV 362
Query: 288 KITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVV 347
++ S+ V + LNP+W E Y V + Q +E+ V+D + M +
Sbjct: 363 RLGTQTFCSR---VIDEELNPQWGETYEVMVHEVPGQEIEVEVFDKDPDKDDFLGRMKLD 419
Query: 348 PLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQ 407
K L LD D Q + + L +E++ E L + + +Q V
Sbjct: 420 VGKVL-----QAGVLD-----DWFPLQGGQGQVHLRLEWLSLLSDAEKLEQVLQWNQGVS 469
Query: 408 KAPENTPAGGGLLVVIVHEAQDV---EGKHHTNPYARILFRGEERKTKHVKKNRDPRWEE 464
PE P +LVV + AQD+ +G NP ++ + +++K V P WEE
Sbjct: 470 SRPE--PPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSIQDVTQESKAVYSTNCPVWEE 527
Query: 465 EFQFMLEEPPTNDRLHVEVCSVSSRIGL 492
F+F L++P + + L V+V S + L
Sbjct: 528 AFRFFLQDPQSQE-LDVQVKDDSRALTL 554
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May play a role as calcium-regulated intrinsic membrane protein. Pongo abelii (taxid: 9601) |
| >sp|Q3U7R1|ESYT1_MOUSE Extended synaptotagmin-1 OS=Mus musculus GN=Esyt1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 128/504 (25%), Positives = 226/504 (44%), Gaps = 51/504 (10%)
Query: 18 SSGLVIGYFLF---IYFQPTDVKNPEIRPLV---------ER-DSETLQQMLPEIPLWVK 64
++GL +G+ LF +Y V++ + R L ER +ETL E+P WV
Sbjct: 63 AAGLSVGFVLFGLALYLGWRRVRDGKERSLRAARQLLDDEERITAETLYMSHRELPAWVS 122
Query: 65 CPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLP 124
PD ++ +WLNK + +WP+L + + K P + P +++ F + LG P
Sbjct: 123 FPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGANP--HLQTFTFTRVELGEKP 180
Query: 125 PTFQGMKVYVTDEK-ELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLK 183
G+KV+ + K +++++ + + + + + VK + KA V+ +Q+ R+ L+
Sbjct: 181 LRIIGVKVHPSQRKDQILLDLNVSYVGDVQIDVEVKKYFCKAGVK--GMQLHGVLRVILE 238
Query: 184 PLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLWPKT 243
PL P + + +++P +D + +L+ IPGL +I +A + P
Sbjct: 239 PLTGDLPIVGAVSMFFIKRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIAAFLVLPNR 297
Query: 244 LEVPI---LDPSKAYRRPV--GILHVKVVKAMNLKKKD------LLGASDPYVKLKITED 292
L VP+ L R P+ GI+ + ++ A L KD + G SDPY +++
Sbjct: 298 LLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVRVGTQ 357
Query: 293 KLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
S+ V + LNP W E Y V + Q +E+ V+ DK L +
Sbjct: 358 TFCSR---VIDEELNPHWGETYEVIVHEVPGQEIEVEVF--------DKDPDKDDFLGRM 406
Query: 353 TPEEPSVKTLDLLKN-MDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPE 411
+ V +L N L GQ + L +E++ E L + + ++ + PE
Sbjct: 407 KLDVGKVLQAGVLDNWYPLQGGQGQV---HLRLEWLSLLPDAEKLDQVLQWNRGITSRPE 463
Query: 412 NTPAGGGLLVVIVHEAQDV---EGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQF 468
P +LVV + AQD+ +G NP ++ + R++K P WEE F+F
Sbjct: 464 --PPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSVQDVTRESKATYSTNSPVWEEAFRF 521
Query: 469 MLEEPPTNDRLHVEVCSVSSRIGL 492
L++P + + L V+V S + L
Sbjct: 522 FLQDPRSQE-LDVQVKDDSRALTL 544
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 158/307 (51%), Gaps = 22/307 (7%)
Query: 56 LPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEF 115
L ++P WV PD +RV+WLNK + MWPY+ + K ++ +P++ +++ F
Sbjct: 144 LQQLPAWVNFPDVERVEWLNKVVGQMWPYIGMYVEKMFQDKVEPLVRSS--SAHLKAFTF 201
Query: 116 ETLTLGTLPPTFQGMKVYV--TDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQ 173
+ LG P G+K Y D++E+I++ L + + + + VK KA V+ V Q
Sbjct: 202 TKVHLGEKFPRINGVKSYTKNVDKREVILDLQLSYNGDVEINVEVKKM-CKAGVKGV--Q 258
Query: 174 VFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQ 233
+ R+ L PL+P P + + +++PH+D + +++ IPG+ F +I
Sbjct: 259 LHGTLRVILAPLLPDLPFVGAVTMFFIQRPHLDINWTGL-TNVLEIPGVSDFSDSMIVDM 317
Query: 234 VANMYLWPKTLEVPILDPSKA----YRRPVGILHVKVVKAMNLKKKD------LLGASDP 283
+A+ + P VP+ +A + P G+L + +++A +L KD + G SDP
Sbjct: 318 IASHLVLPNRFTVPLSSQVQAAQLRFPLPHGVLRLHLIEAEDLIPKDNYLKGIIRGKSDP 377
Query: 284 YVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMG 343
Y L+I S+ T+K +NLNP+W E Y F V + Q +E+ +YD E K D +G
Sbjct: 378 YAVLRIGNQNFKSR--TIK-ENLNPKWGEMYEFVVHEVPGQDLEVDLYD-EDPDKDDFLG 433
Query: 344 MNVVPLK 350
V+ L+
Sbjct: 434 SLVIGLE 440
|
May play a role as calcium-regulated intrinsic membrane protein. Xenopus tropicalis (taxid: 8364) |
| >sp|Q3TZZ7|ESYT2_MOUSE Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 113/453 (24%), Positives = 216/453 (47%), Gaps = 41/453 (9%)
Query: 58 EIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFET 117
++P WV PD +R +WLNK ++ MWP++ + I K + +P + + + + F
Sbjct: 106 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV--RGANAHLSTFSFTK 163
Query: 118 LTLGTLPPTFQGMKVYV--TDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVF 175
+ +G P G+KVY D++++I++ + + N + + +K + +A V+ + Q+
Sbjct: 164 VDVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVKSI--QIH 221
Query: 176 AQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVA 235
R+ L+PL+ P + + + KP ++ + +L+ IPGL +I ++
Sbjct: 222 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDIPGLNGLSDTIILDIIS 280
Query: 236 NMYLWPKTLEVPILDPSKAYRR----PVGILHVKVVKAMNLKKKD------LLGASDPYV 285
N + P + VP++ + + P G+L + ++A +L+ KD + G SDPY
Sbjct: 281 NYLVLPNRITVPLVSEVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 340
Query: 286 KLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMN 345
+++ SK V +NL+P+WNE Y V + Q +E+ ++D E K D +G
Sbjct: 341 IIRVGNQIFQSK---VIKENLSPKWNEVYEALVYEHPGQELEIELFD-EDPDKDDFLGSL 396
Query: 346 VVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQT 405
++ L E+ E + LD +D + K + L +E++ +L K + +
Sbjct: 397 MIDLIEVEKE----RLLDEWFTLD----EVPKGKLHLKLEWLTLMPDAANLDKVLADIRA 448
Query: 406 VQKAPENTPAGGGLLVVIVHEAQDV-EGK---HHTNPYARILFRGEERKTKHVKKNRDPR 461
K + LL++ + A+++ GK + NP ++ + +++K K +P
Sbjct: 449 -DKDQASDGLSSALLILYLDSARNLPSGKKINSNPNPLVQMSVGHKAQESKIRYKTSEPV 507
Query: 462 WEEEFQFMLEEPPTNDRLHVEV------CSVSS 488
WEE F F + P D L VEV CS+ S
Sbjct: 508 WEENFTFFIHNPRRQD-LEVEVKDEQHQCSLGS 539
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|A0FGR8|ESYT2_HUMAN Extended synaptotagmin-2 OS=Homo sapiens GN=ESYT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 111/442 (25%), Positives = 213/442 (48%), Gaps = 35/442 (7%)
Query: 58 EIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFET 117
++P WV PD +R +WLNK ++ MWP++ + I K + +P + + + + F
Sbjct: 182 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV--RGANTHLSTFSFTK 239
Query: 118 LTLGTLPPTFQGMKVYV--TDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVF 175
+ +G P G+KVY D++++I++ + + N + + +K + +A V+ + Q+
Sbjct: 240 VDVGQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVKSI--QIH 297
Query: 176 AQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVA 235
R+ L+PL+ P + + + KP ++ + +L+ +PGL +I ++
Sbjct: 298 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDVPGLNGLSDTIILDIIS 356
Query: 236 NMYLWPKTLEVPILDPSK--AYRRPV--GILHVKVVKAMNLKKKD------LLGASDPYV 285
N + P + VP++ + R PV G+L + ++A +L+ KD + G SDPY
Sbjct: 357 NYLVLPNRITVPLVSEVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 416
Query: 286 KLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMN 345
+++ S+ V +NL+P+WNE Y V + Q +E+ ++D E K D +G
Sbjct: 417 IIRVGNQIFQSR---VIKENLSPKWNEVYEALVYEHPGQELEIELFD-EDPDKDDFLGSL 472
Query: 346 VVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQT 405
++ L E+ E + LD +D + K + L +E++ +L K + +
Sbjct: 473 MIDLIEVEKE----RLLDEWFTLD----EVPKGKLHLRLEWLTLMPNASNLDKVLTDIK- 523
Query: 406 VQKAPENTPAGGGLLVVIVHEAQDV-EGK---HHTNPYARILFRGEERKTKHVKKNRDPR 461
K N LL++ + A+++ GK + NP ++ + +++K K +P
Sbjct: 524 ADKDQANDGLSSALLILYLDSARNLPSGKKISSNPNPVVQMSVGHKAQESKIRYKTNEPV 583
Query: 462 WEEEFQFMLEEPPTNDRLHVEV 483
WEE F F + P D L VEV
Sbjct: 584 WEENFTFFIHNPKRQD-LEVEV 604
|
May play a role as calcium-regulated intrinsic membrane protein. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | ||||||
| 224080620 | 538 | plant synaptotagmin [Populus trichocarpa | 0.942 | 0.920 | 0.830 | 0.0 | |
| 225457921 | 539 | PREDICTED: extended synaptotagmin-2 isof | 0.944 | 0.920 | 0.820 | 0.0 | |
| 359492268 | 538 | PREDICTED: extended synaptotagmin-2 isof | 0.929 | 0.907 | 0.819 | 0.0 | |
| 356538638 | 539 | PREDICTED: extended synaptotagmin-3-like | 0.942 | 0.918 | 0.822 | 0.0 | |
| 224103201 | 523 | plant synaptotagmin [Populus trichocarpa | 0.914 | 0.917 | 0.820 | 0.0 | |
| 356544874 | 539 | PREDICTED: extended synaptotagmin-2-B-li | 0.942 | 0.918 | 0.816 | 0.0 | |
| 224061983 | 538 | predicted protein [Populus trichocarpa] | 0.944 | 0.921 | 0.800 | 0.0 | |
| 449469877 | 539 | PREDICTED: synaptotagmin-2-like [Cucumis | 0.944 | 0.920 | 0.786 | 0.0 | |
| 147816784 | 539 | hypothetical protein VITISV_031706 [Viti | 0.944 | 0.920 | 0.812 | 0.0 | |
| 356564373 | 538 | PREDICTED: extended synaptotagmin-2-like | 0.944 | 0.921 | 0.788 | 0.0 |
| >gi|224080620|ref|XP_002306182.1| plant synaptotagmin [Populus trichocarpa] gi|222849146|gb|EEE86693.1| plant synaptotagmin [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/496 (83%), Positives = 461/496 (92%), Gaps = 1/496 (0%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG STI GFCGFGVGIS+GL IGY+LFIYFQP+DVK+PE+RPLVE DSETLQ+MLPEIP
Sbjct: 1 MGFFSTILGFCGFGVGISTGLTIGYYLFIYFQPSDVKDPEVRPLVEHDSETLQRMLPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LWVK PD+DR+DWLN+F++LMWPYLDKAICKTA+NIAKPIIAEQIPKYKI++VEFETLTL
Sbjct: 61 LWVKNPDHDRIDWLNRFIQLMWPYLDKAICKTAENIAKPIIAEQIPKYKIDAVEFETLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
GTLPPTF GMKVYVTDEKELIMEPC+KWA NPNVT+ VKAFGLKAT QVVDLQVFA PRI
Sbjct: 121 GTLPPTFHGMKVYVTDEKELIMEPCIKWAGNPNVTVAVKAFGLKATAQVVDLQVFASPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
TLKPLVP+FPCFANIYVSLMEKPHVDFGLKL+GADLMSIPGLYR VQE+IK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADLMSIPGLYRVVQEIIKDQVANMYLW 240
Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
PKTLEVPILDP+KA +RPVGIL VKV++AM LKKKDL+GA+DPYVK+K+TEDKLP+KKTT
Sbjct: 241 PKTLEVPILDPAKAMKRPVGILSVKVLRAMKLKKKDLMGAADPYVKVKLTEDKLPAKKTT 300
Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
VKHKNLNPEWNEE++ V+DPESQA+EL VYDWEQVGKHDKMGMNVVPLKELTPEEP +
Sbjct: 301 VKHKNLNPEWNEEFHVVVKDPESQALELRVYDWEQVGKHDKMGMNVVPLKELTPEEPKIM 360
Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
TL+LLKNMDLND QNEKSRGQL+VE YKPFKE+D+ SF+E Q QKAPE TPAGGGLL
Sbjct: 361 TLELLKNMDLNDPQNEKSRGQLMVELTYKPFKEDDVNLSFKE-QVEQKAPEGTPAGGGLL 419
Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
+VIVHEAQDVEGKHHTNPY R+LFRGEE++TKHVKKNRDPRWE+EFQ+ L++PP+N++LH
Sbjct: 420 LVIVHEAQDVEGKHHTNPYVRLLFRGEEKRTKHVKKNRDPRWEDEFQYTLDKPPSNEKLH 479
Query: 481 VEVCSVSSRIGLLHPK 496
VEV S SS IGLLHPK
Sbjct: 480 VEVISTSSGIGLLHPK 495
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457921|ref|XP_002272757.1| PREDICTED: extended synaptotagmin-2 isoform 1 [Vitis vinifera] gi|302142694|emb|CBI19897.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/496 (82%), Positives = 459/496 (92%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG++STI GFCGFGVGIS GL IGY+LFIYFQPTDVK+P +RPLVE+DS+TLQ++LPEIP
Sbjct: 1 MGIVSTILGFCGFGVGISIGLFIGYYLFIYFQPTDVKDPIVRPLVEQDSKTLQRLLPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
WVK PDYDRVDWLNKF+E MWPYLDKAICKTAKNIAKPIIAEQIPKYKI+SVEFE LTL
Sbjct: 61 QWVKNPDYDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPPTFQGMKVY TDEKELIME +KWA NPN+T+ VKAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
TLKPLVP+FPCFANI+VSLMEKPHVDFGLKL+GAD+M+IPGLYR VQELIK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLW 240
Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
PKTLEVPI+DP+KA ++PVGIL VKVV+AM LKKKD++GASDPYVK+K++EDKLPSKKTT
Sbjct: 241 PKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDIMGASDPYVKMKLSEDKLPSKKTT 300
Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
VKHKNLNPEWNEE+N V+DPESQA+E+ VYDWEQVGKHDKMGMNV+PLKELTP+EP V
Sbjct: 301 VKHKNLNPEWNEEFNMVVKDPESQALEVIVYDWEQVGKHDKMGMNVIPLKELTPDEPKVL 360
Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
TLDLLKNMD ND QNEKSRGQ+V+E +YKPFK+ ++PK E+ ++KAPE TPAGGGLL
Sbjct: 361 TLDLLKNMDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPEGTPAGGGLL 420
Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
V+IVHEAQ+VEGKHHTNPY R+LFRGEERKTK+VKKNRDPRWEEEFQFMLEEPPTNDR+H
Sbjct: 421 VIIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYVKKNRDPRWEEEFQFMLEEPPTNDRIH 480
Query: 481 VEVCSVSSRIGLLHPK 496
VEV S SSR+GLLHPK
Sbjct: 481 VEVVSTSSRMGLLHPK 496
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492268|ref|XP_003634391.1| PREDICTED: extended synaptotagmin-2 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/488 (81%), Positives = 451/488 (92%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG++STI GFCGFGVGIS GL IGY+LFIYFQPTDVK+P +RPLVE+DS+TLQ++LPEIP
Sbjct: 1 MGIVSTILGFCGFGVGISIGLFIGYYLFIYFQPTDVKDPIVRPLVEQDSKTLQRLLPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
WVK PDYDRVDWLNKF+E MWPYLDKAICKTAKNIAKPIIAEQIPKYKI+SVEFE LTL
Sbjct: 61 QWVKNPDYDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPPTFQGMKVY TDEKELIME +KWA NPN+T+ VKAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
TLKPLVP+FPCFANI+VSLMEKPHVDFGLKL+GAD+M+IPGLYR VQELIK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLW 240
Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
PKTLEVPI+DP+KA ++PVGIL VKVV+AM LKKKD++GASDPYVK+K++EDKLPSKKTT
Sbjct: 241 PKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDIMGASDPYVKMKLSEDKLPSKKTT 300
Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
VKHKNLNPEWNEE+N V+DPESQA+E+ VYDWEQVGKHDKMGMNV+PLKELTP+EP V
Sbjct: 301 VKHKNLNPEWNEEFNMVVKDPESQALEVIVYDWEQVGKHDKMGMNVIPLKELTPDEPKVL 360
Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
TLDLLKNMD ND QNEKSRGQ+V+E +YKPFK+ ++PK E+ ++KAPE TPAGGGLL
Sbjct: 361 TLDLLKNMDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPEGTPAGGGLL 420
Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
V+IVHEAQ+VEGKHHTNPY R+LFRGEERKTK+VKKNRDPRWEEEFQFMLEEPPTNDR+H
Sbjct: 421 VIIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYVKKNRDPRWEEEFQFMLEEPPTNDRIH 480
Query: 481 VEVCSVSS 488
VEV S SS
Sbjct: 481 VEVVSTSS 488
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538638|ref|XP_003537808.1| PREDICTED: extended synaptotagmin-3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 849 bits (2194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/496 (82%), Positives = 451/496 (90%), Gaps = 1/496 (0%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG TI GF GFGVGIS GLV GYFLFIYFQPT+V++PEI+PL E++ ETLQ+M PEIP
Sbjct: 1 MGFFGTILGFLGFGVGISIGLVAGYFLFIYFQPTNVEDPEIKPLAEQEQETLQRMFPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LW+K PD+DR+DWLNKF+E MWPYLDKAICKTAKNIAKPIIAEQIPKYKI+SVEFETLTL
Sbjct: 61 LWIKNPDFDRLDWLNKFVEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPPTFQGMKVYVTDEKELIMEP +KWAANPNVT+ VKAFGLKATVQVVDLQVF PRI
Sbjct: 121 GSLPPTFQGMKVYVTDEKELIMEPSVKWAANPNVTVSVKAFGLKATVQVVDLQVFLLPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
TLKPLVP+FPCFANIYVSLMEKPHVDFGLKL+GADLMSIPG+YR VQELIK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQELIKDQVANMYLW 240
Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
PKTLEV +LD SKA +RPVGILHVKV++A+ LKKKDLLGASDPYVKLK+TEDKLPSKKTT
Sbjct: 241 PKTLEVQVLDMSKALKRPVGILHVKVLQAIKLKKKDLLGASDPYVKLKLTEDKLPSKKTT 300
Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
VKHKNLNPEWNEE+N V+DP+SQ +E+ VYDWEQVGKHDKMGMNV+PLKE++PEE
Sbjct: 301 VKHKNLNPEWNEEFNMVVKDPDSQVLEINVYDWEQVGKHDKMGMNVIPLKEVSPEETKRF 360
Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
+LDLLKNMD ND QNEKSRGQ+VVE YKPFKEEDL K FEE+QTV KAPE TPAGGGLL
Sbjct: 361 SLDLLKNMDPNDVQNEKSRGQIVVELTYKPFKEEDLGKGFEETQTVPKAPEGTPAGGGLL 420
Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
VVIVHEAQDVEGK+HTNP+ R++FRGEE+KTK +KKNRDPRWE+EFQFM+EEPPTNDRLH
Sbjct: 421 VVIVHEAQDVEGKYHTNPHVRLIFRGEEKKTKRIKKNRDPRWEDEFQFMVEEPPTNDRLH 480
Query: 481 VEVCSVSSRIGLLHPK 496
VEV S SSR LLH K
Sbjct: 481 VEVVSTSSR-NLLHQK 495
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103201|ref|XP_002312964.1| plant synaptotagmin [Populus trichocarpa] gi|222849372|gb|EEE86919.1| plant synaptotagmin [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/496 (82%), Positives = 445/496 (89%), Gaps = 16/496 (3%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG +STI GFCGFGVG+S+GL IGY+LFIYFQPTDVK+PE+RPL E+DSETLQ++LPEIP
Sbjct: 1 MGFLSTISGFCGFGVGLSTGLTIGYYLFIYFQPTDVKDPEVRPLAEQDSETLQRILPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LWVK PDYDR+DWLN+F++LMWPYLDKAICKT KNIAKPIIAEQIPKYKI++VEFETLTL
Sbjct: 61 LWVKNPDYDRIDWLNRFIQLMWPYLDKAICKTVKNIAKPIIAEQIPKYKIDAVEFETLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
GTLPPTF GMKVYVTDEKELIMEPC+KWA NPNVT+ VKAFGLKAT QVVDLQVFA PRI
Sbjct: 121 GTLPPTFHGMKVYVTDEKELIMEPCIKWAGNPNVTVAVKAFGLKATAQVVDLQVFASPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
TLKPLVP+FPCFANIYVSLMEKPHVDFGLKL+GADLMSIPGLYR VQE+IK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADLMSIPGLYRVVQEIIKDQVANMYLW 240
Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
PKTLEVPILDP+ KAM LKKKDL+GASDPYVK+K+TEDKLP+KKTT
Sbjct: 241 PKTLEVPILDPA---------------KAMKLKKKDLMGASDPYVKIKLTEDKLPAKKTT 285
Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
VKHKNLNPEWNEE+N V+DPESQA+EL VYDWEQVGKHD+MGMNVVPLK+LTPEEP V
Sbjct: 286 VKHKNLNPEWNEEFNLVVKDPESQALELRVYDWEQVGKHDRMGMNVVPLKDLTPEEPKVM 345
Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
TLDLLKNMDLND QNEKSRGQL+VE YKPFKE+DL KSF++ + QKAPE TPAGGGLL
Sbjct: 346 TLDLLKNMDLNDPQNEKSRGQLMVELTYKPFKEDDLNKSFKD-EVEQKAPEGTPAGGGLL 404
Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
VV +HEAQDVEGKHHTNPY R+LFRGEE KTK VKKNRDPRWEEEFQF LEEPP N +LH
Sbjct: 405 VVTIHEAQDVEGKHHTNPYVRLLFRGEEMKTKRVKKNRDPRWEEEFQFTLEEPPVNAKLH 464
Query: 481 VEVCSVSSRIGLLHPK 496
VEV S SSRIGLLHPK
Sbjct: 465 VEVVSTSSRIGLLHPK 480
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544874|ref|XP_003540872.1| PREDICTED: extended synaptotagmin-2-B-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/496 (81%), Positives = 449/496 (90%), Gaps = 1/496 (0%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG TI GF GFGVGIS GLV GYFLFIYFQPT+V++PEI+PL E++ ETLQ+M PEIP
Sbjct: 1 MGFFGTILGFLGFGVGISIGLVSGYFLFIYFQPTNVEDPEIKPLSEQEQETLQRMFPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LW+K PD+DR+DWLNKF+E MWPYLDKAICKTAKNIAKPIIAEQIPKYKI+SVEFETLTL
Sbjct: 61 LWIKNPDFDRLDWLNKFVEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPPTFQGMKV+VTDEKELIMEP +KWA NPNVT+ VKAFGLKATVQVVDLQVF PRI
Sbjct: 121 GSLPPTFQGMKVFVTDEKELIMEPSVKWAGNPNVTVSVKAFGLKATVQVVDLQVFLLPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
TLKPLVP+FPCFANIYVSLMEKPHVDFGLKL+GADLMSIPG+YR VQELIK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQELIKDQVANMYLW 240
Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
PKTLEV +LD SKA +RPVGILHVKV++AM LKKKDLLGASDPYVKLK+TEDKLPSKKTT
Sbjct: 241 PKTLEVQVLDMSKALKRPVGILHVKVLQAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTT 300
Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
VKH NLNPEWNEE+N V+DP+SQ +E+ VYDWEQVGK DKMGMNV+PLKE++PEEP
Sbjct: 301 VKHNNLNPEWNEEFNIVVKDPDSQVLEINVYDWEQVGKRDKMGMNVIPLKEVSPEEPKRF 360
Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
TLDLLKNMD ND QNEKSRGQ+VVE YKPFKEEDL K FEE+QTV KAPE TPAGGGLL
Sbjct: 361 TLDLLKNMDPNDAQNEKSRGQIVVELTYKPFKEEDLGKGFEETQTVPKAPEGTPAGGGLL 420
Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
VVIVHEAQDVEGK+HTNP+ R++FRG+E+KTK +KKNRDPRWE+EFQFM++EPPTNDRLH
Sbjct: 421 VVIVHEAQDVEGKYHTNPHVRLIFRGDEKKTKRIKKNRDPRWEDEFQFMVDEPPTNDRLH 480
Query: 481 VEVCSVSSRIGLLHPK 496
VEV S SSR LLH K
Sbjct: 481 VEVVSTSSR-NLLHQK 495
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061983|ref|XP_002300696.1| predicted protein [Populus trichocarpa] gi|222842422|gb|EEE79969.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/496 (80%), Positives = 450/496 (90%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG++S+I GFCGFG+G S G+VIGY++FIYFQPTDVK+P +RPL+E+DS+TL ++LPEIP
Sbjct: 1 MGILSSILGFCGFGIGTSIGIVIGYYMFIYFQPTDVKDPVLRPLIEQDSKTLLRLLPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
WVK PDYDRVDWLNK +E MWPY++ AICKTA+NIAKPIIAEQIPKYKI+SVEFETLTL
Sbjct: 61 QWVKNPDYDRVDWLNKLIENMWPYINTAICKTARNIAKPIIAEQIPKYKIDSVEFETLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPP F GMKVYVTDEKELIMEP LKWA NP++TI VKAFGLKATVQVVDLQVFA PRI
Sbjct: 121 GSLPPNFPGMKVYVTDEKELIMEPVLKWAGNPDITIAVKAFGLKATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
TLKPL+P FPCFANIYVSL+EKPHVDFGLKL+GAD MSIPGLY+FVQELIK QVANMYLW
Sbjct: 181 TLKPLLPVFPCFANIYVSLLEKPHVDFGLKLLGADAMSIPGLYKFVQELIKDQVANMYLW 240
Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
PK L VPI+DPSKA +RPVGIL VKV++AM LKKKDLLGASDPYVKLK+TEDK S KTT
Sbjct: 241 PKCLVVPIMDPSKAMKRPVGILTVKVLRAMKLKKKDLLGASDPYVKLKLTEDKHHSNKTT 300
Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
VKHKNLNPEWNEE+N TV+DPESQA+E+ VYDWEQVGKHDKMGMNV+PLKELTP++P V
Sbjct: 301 VKHKNLNPEWNEEFNITVKDPESQALEVLVYDWEQVGKHDKMGMNVIPLKELTPDDPKVL 360
Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
TLDLLKNMD ND QNEKSRGQ+VVE +YKPFKE+++PK ++ V KAPE TPAGGGL
Sbjct: 361 TLDLLKNMDPNDVQNEKSRGQIVVELVYKPFKEDEIPKDIDDPNAVAKAPEGTPAGGGLF 420
Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
VVIVHEAQDVEGKHHTNPYAR+LF+GEE++TK VKK+RDPRWEEEFQF+LEE PTN+RLH
Sbjct: 421 VVIVHEAQDVEGKHHTNPYARLLFKGEEKRTKQVKKSRDPRWEEEFQFVLEEAPTNERLH 480
Query: 481 VEVCSVSSRIGLLHPK 496
VEV S SSR+GLLHPK
Sbjct: 481 VEVVSSSSRMGLLHPK 496
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469877|ref|XP_004152645.1| PREDICTED: synaptotagmin-2-like [Cucumis sativus] gi|449503958|ref|XP_004162238.1| PREDICTED: synaptotagmin-2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/496 (78%), Positives = 451/496 (90%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG++S+I GF GFG+G S GLV GY++FIYFQP+DVK+P +RPLVE+DS +L +M+PEIP
Sbjct: 1 MGLLSSILGFFGFGLGTSIGLVAGYYMFIYFQPSDVKDPVVRPLVEQDSASLLRMMPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LWVK PDYDRVDWLNKFLE+MWPYLDKAICKT +NIAKPIIAEQIPKYKI++VEF+TLTL
Sbjct: 61 LWVKNPDYDRVDWLNKFLEIMWPYLDKAICKTVRNIAKPIIAEQIPKYKIDAVEFDTLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G LPPT QGMKVY+TD+KELIMEPC+KWA NPNVT+ VKAFGLKATVQVVDLQVFA PRI
Sbjct: 121 GCLPPTLQGMKVYMTDDKELIMEPCMKWAGNPNVTVSVKAFGLKATVQVVDLQVFAIPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
TLKPLVP+FPCFA I+VSLMEKPHVDFGLKL+GAD MSIPGLYRFVQELIK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFAKIFVSLMEKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLW 240
Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
PKTLEV I+DP+ A ++PVGILHVKV++A+ LKKKDL GASDPY+KLK+TEDKLPSKKTT
Sbjct: 241 PKTLEVQIMDPANAMKKPVGILHVKVLRALKLKKKDLFGASDPYLKLKLTEDKLPSKKTT 300
Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
VKH NLNP WNEE+ F V+DPESQA+E+ +YDWEQVGKHDKMGMNVVPLKELTPEE
Sbjct: 301 VKHTNLNPVWNEEFTFVVKDPESQALEMILYDWEQVGKHDKMGMNVVPLKELTPEESKEF 360
Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
TLD+LKNMD ND QNEKSRGQ+VVE +YKPFK+++ KS ++++ VQKAP+ TPAGGGLL
Sbjct: 361 TLDVLKNMDPNDTQNEKSRGQIVVEMLYKPFKDDEALKSVDDAEAVQKAPDGTPAGGGLL 420
Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
V+++H+A+DVEGKHHTNPY R+LFRGEE++TKHVKKNRDPRW+EEFQF LEEPP ND++H
Sbjct: 421 VIMIHQAEDVEGKHHTNPYVRLLFRGEEKRTKHVKKNRDPRWDEEFQFTLEEPPVNDKIH 480
Query: 481 VEVCSVSSRIGLLHPK 496
VEV S SSRIGLLHPK
Sbjct: 481 VEVLSASSRIGLLHPK 496
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816784|emb|CAN71066.1| hypothetical protein VITISV_031706 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 836 bits (2159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/496 (81%), Positives = 452/496 (91%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG++STI GFCGFGVGIS GL IGY+LFIYFQPTDVK+P +RPLVE+DS+TLQ++LPEIP
Sbjct: 1 MGIVSTILGFCGFGVGISIGLFIGYYLFIYFQPTDVKDPIVRPLVEQDSKTLQRLLPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
WVK PDYDRVDWLNKF+E MWPYLDKAICKTAKNIAKPIIAEQIPKYKI+SVEFE LTL
Sbjct: 61 QWVKNPDYDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPPTFQGMKVY TDEKELIME +KWA NPN+T+ VKAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
TLKPLVP+FPCFANI+VSLMEKPHVDFGLKL+GAD+M+IPGLYR VQELIK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLW 240
Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
PKTLEVPI+DP+KA ++PVGIL VKVV+AM LKKKDL+GASDPYVK+K+ EDKLPSKKTT
Sbjct: 241 PKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDLMGASDPYVKMKLXEDKLPSKKTT 300
Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
VK KNLNPEWNEE+N V+DPESQA+E+ VYDWEQVGKHDKMGMNV+PLKELTP+EP V
Sbjct: 301 VKXKNLNPEWNEEFNMVVKDPESQALEVXVYDWEQVGKHDKMGMNVIPLKELTPDEPKVL 360
Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
TLDLLKN D ND QNEKSRGQ+V+E +YKPFK+ ++PK E+ ++KAP TPAGGGLL
Sbjct: 361 TLDLLKNXDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPXGTPAGGGLL 420
Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
V IVHEAQ+VEGKHHTNPY R+LFRGEERKTK+ KKNRDPRWEEEF FMLEEPPTNDR+H
Sbjct: 421 VXIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYXKKNRDPRWEEEFXFMLEEPPTNDRIH 480
Query: 481 VEVCSVSSRIGLLHPK 496
VEV S SSR+GLLHPK
Sbjct: 481 VEVVSTSSRMGLLHPK 496
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564373|ref|XP_003550429.1| PREDICTED: extended synaptotagmin-2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/496 (78%), Positives = 448/496 (90%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG++STI F GFGVG S GLVIGY+LFIYFQPTDVK+P I+PLVE+D++TLQ +LPEIP
Sbjct: 1 MGILSTIASFFGFGVGTSIGLVIGYYLFIYFQPTDVKDPVIQPLVEQDAKTLQLLLPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
W+K PDYDR+DWLNKF+ MWPYLDKAICKTA++IAKPIIAEQIPKYKI+SVEFE L+L
Sbjct: 61 TWIKNPDYDRLDWLNKFILYMWPYLDKAICKTARSIAKPIIAEQIPKYKIDSVEFEELSL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPPTFQGMKVYVTDEKELIMEP +KWA NPN+ + +KAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNIIVAIKAFGLRATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
TLKPLVP+FPCFANIY+SLMEKPHVDFGLKL+GAD MSIPGLYR VQE+IK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYMSLMEKPHVDFGLKLLGADAMSIPGLYRIVQEIIKDQVANMYLW 240
Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
PK LEV I+DP+KA + PVGILHVKVV+A LKKKDLLGASDPYVKLK+TE+KLPSKKTT
Sbjct: 241 PKALEVQIMDPTKAMKVPVGILHVKVVRAEKLKKKDLLGASDPYVKLKLTEEKLPSKKTT 300
Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
VK+KNLNPEWNEE+N V+DPESQ +EL VYDWEQ+GKHDKMGMNV+PLKE+TP+EP V
Sbjct: 301 VKYKNLNPEWNEEFNVVVKDPESQVLELTVYDWEQIGKHDKMGMNVIPLKEITPDEPKVV 360
Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
TL+LLK MD ND +NEK RGQL VE +YKPFKE++LP+S E+S ++KAPE TPA GGLL
Sbjct: 361 TLNLLKTMDPNDPENEKLRGQLTVEVLYKPFKEDELPQSTEDSNAIEKAPEGTPASGGLL 420
Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
V+IVHEA+DVEGKHHTNPY R+LF+GEERKTKHVKKNRDPRW E FQFMLEEPPTN+RL+
Sbjct: 421 VIIVHEAEDVEGKHHTNPYVRLLFKGEERKTKHVKKNRDPRWGESFQFMLEEPPTNERLY 480
Query: 481 VEVCSVSSRIGLLHPK 496
VEV S SS++GLLHPK
Sbjct: 481 VEVQSASSKLGLLHPK 496
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | ||||||
| TAIR|locus:2198581 | 537 | SYTB "AT1G20080" [Arabidopsis | 0.940 | 0.919 | 0.715 | 5e-202 | |
| TAIR|locus:2146688 | 540 | SYTC "AT5G04220" [Arabidopsis | 0.923 | 0.898 | 0.543 | 5.1e-151 | |
| TAIR|locus:2047027 | 256 | AT2G21010 "AT2G21010" [Arabido | 0.403 | 0.828 | 0.645 | 3.1e-76 | |
| TAIR|locus:2201036 | 560 | NTMC2T2.1 "AT1G05500" [Arabido | 0.718 | 0.673 | 0.335 | 4.2e-63 | |
| TAIR|locus:2184931 | 569 | SYTD "AT5G11100" [Arabidopsis | 0.740 | 0.683 | 0.330 | 2.6e-59 | |
| TAIR|locus:2100992 | 510 | NTMC2T4 [Arabidopsis thaliana | 0.779 | 0.801 | 0.310 | 2.1e-54 | |
| FB|FBgn0039208 | 849 | Esyt2 [Drosophila melanogaster | 0.874 | 0.540 | 0.250 | 1.9e-38 | |
| WB|WBGene00020443 | 713 | esyt-2 [Caenorhabditis elegans | 0.777 | 0.572 | 0.254 | 3e-37 | |
| UNIPROTKB|Q9BSJ8 | 1104 | ESYT1 "Extended synaptotagmin- | 0.851 | 0.404 | 0.261 | 1.3e-34 | |
| MGI|MGI:1344426 | 1092 | Esyt1 "extended synaptotagmin- | 0.847 | 0.407 | 0.257 | 1.6e-33 |
| TAIR|locus:2198581 SYTB "AT1G20080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1955 (693.3 bits), Expect = 5.0e-202, P = 5.0e-202
Identities = 355/496 (71%), Positives = 429/496 (86%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG+ISTI G GFG G + G+VIGY+LFIYFQ TDV++PEI+PLVE DSET+ M PEIP
Sbjct: 1 MGIISTILGVIGFGFGTTIGIVIGYYLFIYFQSTDVEDPEIKPLVELDSETIATMFPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
+WVK PD+DR+DWLNK + MWPY+DKAICK AK+IAKPIIAEQIP YKI+SVEFE LTL
Sbjct: 61 MWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPP+FQGMKVY TD+KE+IME +KWA NPN+ + KAFGLKATVQV+DLQV+A PRI
Sbjct: 121 GSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKAFGLKATVQVIDLQVYATPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
TLKPLVP+FPCFANI+VSLM+KP VDFGLKL+GAD+M+IPGLYRFVQE+IK QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYLW 240
Query: 241 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 300
PKTL V I+DPSKA ++PVG+L VKV+KA+ LKKKDLLG SDPYVKL ++ DK+P KKT
Sbjct: 241 PKTLNVQIMDPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGKKTV 300
Query: 301 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
VKH NLNPEWNEE++ V++PESQ ++L VYDWEQVGKHDK+GMNV+ LK+LTPEEP +
Sbjct: 301 VKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEPKLM 360
Query: 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 420
TL+LLK+M+ + +EKSRGQLVVE YKPFK++D+P++ ++ V+KAPE TP+ GGLL
Sbjct: 361 TLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPNAVEKAPEGTPSTGGLL 420
Query: 421 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
VVIVHEA+D+EGK+HTNP R+LFRGEERKTK VKKNR+PRW+E+FQF L+EPP ND+LH
Sbjct: 421 VVIVHEAEDLEGKYHTNPSVRLLFRGEERKTKRVKKNREPRWDEDFQFPLDEPPINDKLH 480
Query: 481 VEVCSVSSRIGLLHPK 496
VEV S SSR L+HPK
Sbjct: 481 VEVISSSSR--LIHPK 494
|
|
| TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1457 (517.9 bits), Expect = 5.1e-151, Sum P(2) = 5.1e-151
Identities = 265/488 (54%), Positives = 355/488 (72%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG +++ G GF +GI GL++G+F+ IY QP+ + P RPLVE L +LP+IP
Sbjct: 1 MGFFTSVLGIIGFVIGIPIGLILGFFVLIYSQPSHQEYPPARPLVETSISVLLDLLPDIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LW+K PDY+RVDW NKF+ MWPYLDKA+C ++ +P+ A+ I + IES+EFE L+L
Sbjct: 61 LWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
GTLPPT G+K Y T+EKEL+ EP +KWA NPN+ + +K L+ VQ+VDLQ FA R+
Sbjct: 121 GTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKVLSLRIRVQLVDLQFFAIVRV 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
LKPL+P FPCF + VSLMEKPHVDFGLK++G DLMSIPGLYR+VQE IK QV++MY W
Sbjct: 181 ALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYHW 240
Query: 241 PKTLEVPILDPSKA-YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKT 299
P+ LE+PILD S A ++PVG+LHV +++A NL KKDLLG SDPYVKL +T +KLP+KKT
Sbjct: 241 PQVLEIPILDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKT 300
Query: 300 TVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSV 359
T+K +NLNPEWNE + V+DP SQ ++L V+DW++VG HD++GM ++PL+++ P E
Sbjct: 301 TIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGERKE 360
Query: 360 KTLDLLKNMDL-NDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGG 418
LDL+KN ++ D ++K RG+L V+ Y PF+EE + + E + ++ + G
Sbjct: 361 FNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESIKRRKESREEKSSEDDDFLSQAG 420
Query: 419 LLVVIVHEAQDVEGKH-HTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTND 477
LL V V A+DVEGK H+NPYA +LFRGE++KTK +KK RDPRW EEFQF LEEPP +
Sbjct: 421 LLSVAVQSAKDVEGKKKHSNPYAVVLFRGEKKKTKMLKKTRDPRWNEEFQFTLEEPPVKE 480
Query: 478 RLHVEVCS 485
+ VEV S
Sbjct: 481 SIRVEVMS 488
|
|
| TAIR|locus:2047027 AT2G21010 "AT2G21010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 142/220 (64%), Positives = 175/220 (79%)
Query: 278 LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337
+G +PYV+++++EDK+ SKKTTVKHKNLNPEWNEE+ F+VRDP++Q +E VY WE++G
Sbjct: 1 MGMINPYVQIELSEDKISSKKTTVKHKNLNPEWNEEFKFSVRDPKTQVLEFNVYGWEKIG 60
Query: 338 KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND-GQNEKSRGQLVVEFIYKPFKEEDL 396
KHDKMGMNV+ LKEL P+E TL+L K +D + GQ K RG+L VE +YKPF EE++
Sbjct: 61 KHDKMGMNVLALKELAPDERKAFTLELRKTLDGGEEGQPGKYRGKLEVELLYKPFTEEEM 120
Query: 397 PKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKK 456
Q VQKAPE TP GG+LVVIVH A+DVEGKHHTNPY I F+GEERKTK+VKK
Sbjct: 121 -------QAVQKAPEGTPVAGGMLVVIVHSAEDVEGKHHTNPYVHIYFKGEERKTKNVKK 173
Query: 457 NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPK 496
N+DP+W EEF FMLEEPP +++LHVEV S SSRIGLLHPK
Sbjct: 174 NKDPKWNEEFSFMLEEPPVHEKLHVEVFSTSSRIGLLHPK 213
|
|
| TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
Identities = 132/393 (33%), Positives = 216/393 (54%)
Query: 12 GFGVGISSGLVIGYFLFIYFQPTDVKNPEIRP--------LVERDSETLQQMLPE--IPL 61
GF VG+ GL++G + I F + ++R E +++LP P
Sbjct: 2 GFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYPS 61
Query: 62 WVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLG 121
WV + ++ WLN L +WPY+D+A + K +P++ + P + S+ F LTLG
Sbjct: 62 WVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAI-VASLTFSKLTLG 120
Query: 122 TLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAF-GLKATVQVVDLQVFAQPRI 180
T+ P F G+ V D+ + +E ++W NPN+ +GVK G+ +QV ++ R+
Sbjct: 121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLW 240
+PLV FPCF + VSL EK +DF LK+VG D+ +IPGL ++E I+ V + W
Sbjct: 181 IFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITW 240
Query: 241 PKTLEVPIL--DPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK 298
P +PI+ D S +PVG+L VK+V+A NL KDL+G SDP+ K+ I + +K+
Sbjct: 241 PVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKR 300
Query: 299 TTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS 358
+ + +LNP WNE + F V D +Q + + +YD E V + +G + L EL P +
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVK 360
Query: 359 VKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391
L L+K++++ ++ K+RG++ +E +Y P+
Sbjct: 361 DVWLKLVKDLEIQ--RDTKNRGEVHLELLYIPY 391
|
|
| TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 134/405 (33%), Positives = 216/405 (53%)
Query: 7 IFGFCGFGVGISSGLVIGYFLFIYFQPT---DVKNPEIRPLVERDSETLQQMLPE--IPL 61
+FG G+ +S GLV+ + + + T D+ I + +++LP P
Sbjct: 4 LFGLF-IGIAVSFGLVVAFARYSSVRSTRRADLAKT-IAAFARMTVQDSRKLLPGDFYPS 61
Query: 62 WVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLG 121
WV +++WLN LE +WPY+++A + K+ +P++ + P + S++F TLG
Sbjct: 62 WVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAM-LASLKFSKFTLG 120
Query: 122 TLPPTFQGMKVYVTDE--KELIMEPCLKWAANPNVTIGVKAF-GLKATVQVVDLQVFAQP 178
T+ P F G+ + ++ + ME ++W NP + + VK G+ ++V ++
Sbjct: 121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVF 180
Query: 179 RITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMY 238
R+ KPLV FPCF + SL EK +DF LK++G +L SIPG+ ++E I+ + +
Sbjct: 181 RLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSI 240
Query: 239 LWPKTLEVPIL--DPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS 296
WP +PIL D S +PVG L VKVV+A +L KD++G SDPY + I +
Sbjct: 241 TWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRT 300
Query: 297 KKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
KKT +LNP WNE + F V D +Q + + V+D E VG +G VPL EL P +
Sbjct: 301 KKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGK 360
Query: 357 PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF-KEEDLPKSF 400
L L+K++++ ++ K+RGQ+ +E +Y P KE L F
Sbjct: 361 VKDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPLGKEGGLKNPF 403
|
|
| TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 132/425 (31%), Positives = 223/425 (52%)
Query: 1 MGVISTI-FGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPE- 58
MG+IS I FG FGV + +G + K +++ L + L+++ +
Sbjct: 1 MGLISGILFGII-FGVALMAGW--SRMMTHRSSKRVAKAVDMKLLGSLSRDDLKKICGDN 57
Query: 59 IPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETL 118
P W+ P +++V WLNK L MWPY+ +A ++ +P++ + P I S++F L
Sbjct: 58 FPQWISFPAFEQVKWLNKLLSKMWPYIAEAATMVIRDSVEPLLEDYRPP-GITSLKFSKL 116
Query: 119 TLGTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQP 178
TLG + P +G++V E ++ M+ L+W +PN+ +GV A +Q+ DLQVF
Sbjct: 117 TLGNVAPKIEGIRVQSFKEGQVTMDVDLRWGGDPNIVLGVTALVASIPIQLKDLQVFTVA 176
Query: 179 RITLKPLVPAFPCFANIYVSLME--KPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVAN 236
R+ + L PC + + V+L+ KP +D+ LK VG L +IPGL + + + T V +
Sbjct: 177 RVIFQ-LADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGLSDMIDDTVDTIVKD 235
Query: 237 MYLWPKTLEVPI----LDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED 292
M WP + VPI +D S +P G L V VVKA NLK K+L+G SDPY + I
Sbjct: 236 MLQWPHRIVVPIGGIPVDLSDLELKPQGKLIVTVVKATNLKNKELIGKSDPYATIYIRP- 294
Query: 293 KLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
+ KT NLNP W++ + D E+Q++ + V+D + VG+ +++G+ +PL L
Sbjct: 295 -VFKYKTKAIENNLNPVWDQTFELIAEDKETQSLTVEVFD-KDVGQDERLGLVKLPLSSL 352
Query: 353 TPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPEN 412
L+LL ++D +++K RG + ++ Y F +E+ + E+ + + + +
Sbjct: 353 EAGVTKELELNLLSSLDTLKVKDKKDRGSITLKVHYHEFNKEEQMAALEDEKKIMEERKR 412
Query: 413 TPAGG 417
G
Sbjct: 413 LKEAG 417
|
|
| FB|FBgn0039208 Esyt2 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 1.9e-38, P = 1.9e-38
Identities = 126/503 (25%), Positives = 236/503 (46%)
Query: 1 MGVISTIF--GFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPL--VERDSETLQQML 56
+ ++ +I+ G+ G+ V VI T K +I + + + + +
Sbjct: 84 VAIVGSIYLVGYMGWSVAWLIAPVILSVARDQLAKTSEKKRDIAKASALASEKDVILARI 143
Query: 57 PEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFE 116
E+P WV PD +R +WLNK L+ +WP + K +P +A + YK+ F+
Sbjct: 144 DELPAWVYFPDVERCEWLNKILKQVWPNANHFARTLVKETIEPNVALALANYKMHGFRFD 203
Query: 117 TLTLGTLPPTFQGMKVYV--TDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQV 174
+ LGT+PP G+K+Y D E+IM+ L +A++ ++ + G+K ++ D Q+
Sbjct: 204 RIILGTIPPRIGGVKIYDKNVDRNEIIMDLDLFYASDCDINFYLG--GMKGGIK--DFQI 259
Query: 175 FAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGA-DLMSIPGLYRFVQELIKTQ 233
R+ +KPL+ + P + + + P++DF L VG D M +PGL ++ +I Q
Sbjct: 260 HGWVRVVMKPLIRSMPLVGGLQIFFLNNPNIDFNL--VGVIDFMDMPGLSDLLRRIIVEQ 317
Query: 234 VANMYLWPKTLEVPILDPSKAYR----RPVGILHVKVVKAMNLKKKDLL----GASDPYV 285
+ N+ + P L + + + A P GIL + VV+A +L KKD+ G SDPY
Sbjct: 318 IGNVMVLPNKLPISLSEEVSAVALKMPEPEGILRIHVVEAKDLMKKDISVLGKGKSDPYA 377
Query: 286 KLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMN 345
+ + + KT + N+NP+W+ TV Q VE+ + D + K + +G
Sbjct: 378 IINVGAQEF---KTQIIDNNVNPKWDYWCEATVFIEMGQFVEIQLKDSDDSKKDENLGRA 434
Query: 346 VVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI-YKPFKE-EDLPKSFEES 403
+ + + + +D + L D ++ G L V YK + DL + E+
Sbjct: 435 SIDIASVIKKG----VVDSW--LTLEDAKH----GLLHVRLQWYKLTADPNDLQQILLET 484
Query: 404 QTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTN---PYARILFRGEERKTKHVKKNRDP 460
Q ++ T +L V + A+ ++ ++ PY ++++T + ++ P
Sbjct: 485 QLLRV----TSMSSAVLSVFIDSARHLKQARSSSKPDPYLVCSVNKQKQQTAMIMRDDSP 540
Query: 461 RWEEEFQFMLEEPPTNDRLHVEV 483
WE+ F F++ P N+ L++++
Sbjct: 541 VWEQGFTFLVSNPD-NESLNIKI 562
|
|
| WB|WBGene00020443 esyt-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 393 (143.4 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 113/444 (25%), Positives = 219/444 (49%)
Query: 41 IRPLVERDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKN-IAKP 99
+R R+ E + L ++P WV+ PD +RV+WLNK + +WPY+ + KT N P
Sbjct: 57 LRATALREREVIMAQLQDLPAWVQFPDTERVEWLNKVIHQLWPYVGE-YTKTFMNDFIIP 115
Query: 100 IIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVTD--EKELIMEPCLKWAANPNVTIG 157
+ Q+P ++ +F + +G +P G+KVY T+ +I++ + +A + + T+
Sbjct: 116 QVKAQMPGM-FKNFKFTKMDMGDIPCRVGGIKVYTTNVGRDRIIVDMDVAYAGDADFTVS 174
Query: 158 VKAFGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLM 217
F T + ++Q + R LKPL+P P + + +E P +DF L +G +++
Sbjct: 175 CCGF----TGGMNNIQFSGKLRAILKPLLPYPPMVGGVSGTFLEMPKMDFNLTGMG-EMV 229
Query: 218 SIPGLYRFVQELIKTQVANMYLWPKTLEVPI---LDPSKAY-RRPVGILHVKVVKAMNLK 273
+PGL ++ +I +Q+A + + P + VP+ +D ++ Y P G++ +K+++A NL+
Sbjct: 230 ELPGLIDAIRSVINSQIAALCVLPNEIVVPLAPDVDVTQLYFPEPDGVVRLKIIEAKNLE 289
Query: 274 KKDLL----GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELA 329
+D+ G SDPY ++++ KT +LNP WNE + V + Q + +
Sbjct: 290 NRDISFIKKGKSDPYAEIQVGSQFF---KTRTIDDDLNPIWNEYFEAVVDQADGQKLRIE 346
Query: 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389
++D +Q GK +++G V LK + + T+D K L ++ G L ++ +
Sbjct: 347 LFDEDQ-GKDEELGRLSVDLKLVQAKG----TID--KWYPLEGCKH----GDLHIKATWM 395
Query: 390 PFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDV---EGKHHTNPYARILFRG 446
E L ++ + + P LL+V + D+ + K +P+ +
Sbjct: 396 NLSTE-LRHLEKQEWEAEWGQADKPIHSALLMVYIDSVADLPYPKSKLEPSPFVEVSLGK 454
Query: 447 EERKTKHVKKNRDPRWEEEFQFML 470
E ++T K +P ++ +F F +
Sbjct: 455 ETQRTPVKVKTVNPLFQSKFLFFV 478
|
|
| UNIPROTKB|Q9BSJ8 ESYT1 "Extended synaptotagmin-1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 387 (141.3 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 129/494 (26%), Positives = 231/494 (46%)
Query: 15 VGISSGLVI-GYFLFIYFQPT-DVKNPEIRP---LVERDSE----TLQQMLPEIPLWVKC 65
VG+S G V+ G L++ ++ D K +R L++ + + TL E+P WV
Sbjct: 74 VGLSVGFVLFGLALYLGWRRVRDEKERSLRAARQLLDDEEQLTAKTLYMSHRELPAWVSF 133
Query: 66 PDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPP 125
PD ++ +WLNK + +WP+L + + K P + P +++ F + LG P
Sbjct: 134 PDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPH--LQTFTFTRVELGEKPL 191
Query: 126 TFQGMKVYVTDEKE-LIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLKP 184
G+KV+ KE ++++ + + + + + VK + KA V+ +Q+ R+ L+P
Sbjct: 192 RIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVK--GMQLHGVLRVILEP 249
Query: 185 LVPAFPCFANIYVSLMEKPHVDFGLKLVG-ADLMSIPGLYRFVQELIKTQVANMYLWPKT 243
L+ P + + + +P +D + G +L+ IPGL +I +A + P
Sbjct: 250 LIGDLPFVGAVSMFFIRRPTLD--INWTGMTNLLDIPGLSSLSDTMIMDSIAAFLVLPNR 307
Query: 244 LEVPI---LDPSKAYRRPV--GILHVKVVKAMNLKKKD------LLGASDPYVKLKITED 292
L VP+ L R P+ GI+ + ++ A L KD + G SDPY +++
Sbjct: 308 LLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVRLGTQ 367
Query: 293 KLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
S+ V + LNP+W E Y V + Q +E+ V+D + K D +G + + ++
Sbjct: 368 TFCSR---VIDEELNPQWGETYEVMVHEVPGQEIEVEVFD-KDPDKDDFLGRMKLDVGKV 423
Query: 353 TPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPEN 412
+ SV LD L GQ + L +E++ E L + + + V P+
Sbjct: 424 L--QASV--LD--DWFPLQGGQGQV---HLRLEWLSLLSDAEKLEQVLQWNWGVSSRPD- 473
Query: 413 TPAGGGLLVVIVHEAQDV---EGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFM 469
P +LVV + AQD+ +G NP ++ + +++K V P WEE F+F
Sbjct: 474 -PPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSIQDVTQESKAVYSTNCPVWEEAFRFF 532
Query: 470 LEEPPTNDRLHVEV 483
L++P + + L V+V
Sbjct: 533 LQDPQSQE-LDVQV 545
|
|
| MGI|MGI:1344426 Esyt1 "extended synaptotagmin-like protein 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 383 (139.9 bits), Expect = 1.6e-33, P = 1.6e-33
Identities = 127/494 (25%), Positives = 228/494 (46%)
Query: 16 GISSGLVI-GYFLFIYFQPT-DVKNPEIRP---LVERD----SETLQQMLPEIPLWVKCP 66
G+S G V+ G L++ ++ D K +R L++ + +ETL E+P WV P
Sbjct: 65 GLSVGFVLFGLALYLGWRRVRDGKERSLRAARQLLDDEERITAETLYMSHRELPAWVSFP 124
Query: 67 DYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPPT 126
D ++ +WLNK + +WP+L + + K P + P +++ F + LG P
Sbjct: 125 DVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGANPH--LQTFTFTRVELGEKPLR 182
Query: 127 FQGMKVYVTDEKE-LIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLKPL 185
G+KV+ + K+ ++++ + + + + + VK + KA V+ +Q+ R+ L+PL
Sbjct: 183 IIGVKVHPSQRKDQILLDLNVSYVGDVQIDVEVKKYFCKAGVK--GMQLHGVLRVILEPL 240
Query: 186 VPAFPCFANIYVSLMEKPHVDFGLKLVG-ADLMSIPGLYRFVQELIKTQVANMYLWPKTL 244
P + + +++P +D + G +L+ IPGL +I +A + P L
Sbjct: 241 TGDLPIVGAVSMFFIKRPTLD--INWTGMTNLLDIPGLSSLSDTMIMDSIAAFLVLPNRL 298
Query: 245 EVPI---LDPSKAYRRPV--GILHVKVVKAMNLKKKD------LLGASDPYVKLKITEDK 293
VP+ L R P+ GI+ + ++ A L KD + G SDPY +++
Sbjct: 299 LVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVRVGTQT 358
Query: 294 LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELT 353
S+ V + LNP W E Y V + Q +E+ V+D + K D +G +
Sbjct: 359 FCSR---VIDEELNPHWGETYEVIVHEVPGQEIEVEVFD-KDPDKDDFLG-------RMK 407
Query: 354 PEEPSVKTLDLLKNM-DLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPEN 412
+ V +L N L GQ + L +E++ E L + + ++ + PE
Sbjct: 408 LDVGKVLQAGVLDNWYPLQGGQGQV---HLRLEWLSLLPDAEKLDQVLQWNRGITSRPE- 463
Query: 413 TPAGGGLLVVIVHEAQDV---EGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFM 469
P +LVV + AQD+ +G NP ++ + R++K P WEE F+F
Sbjct: 464 -PPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSVQDVTRESKATYSTNSPVWEEAFRFF 522
Query: 470 LEEPPTNDRLHVEV 483
L++P + + L V+V
Sbjct: 523 LQDPRSQE-LDVQV 535
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B6ETT4 | SYT2_ARATH | No assigned EC number | 0.7063 | 0.9561 | 0.9348 | no | no |
| Q9SKR2 | SYT1_ARATH | No assigned EC number | 0.7730 | 0.9447 | 0.9168 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | NTMC2T1.2 | plant synaptotagmin (538 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 525 | |||
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 3e-45 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 4e-26 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 7e-26 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 8e-26 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 1e-20 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 9e-19 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 2e-18 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 3e-18 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 7e-16 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 9e-16 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 2e-15 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 4e-15 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 4e-15 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 4e-15 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 5e-15 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 1e-14 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 2e-14 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 2e-14 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 3e-14 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 3e-14 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 4e-14 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 6e-14 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 8e-14 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 3e-13 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 4e-13 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 5e-13 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 4e-12 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 7e-12 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 1e-11 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 2e-11 | |
| cd04047 | 110 | cd04047, C2B_Copine, C2 domain second repeat in Co | 2e-11 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 2e-11 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 5e-11 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 1e-10 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 2e-10 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 4e-10 | |
| cd08382 | 123 | cd08382, C2_Smurf-like, C2 domain present in Smad | 4e-10 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 4e-10 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 5e-10 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 6e-10 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 9e-10 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 3e-09 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 8e-09 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 1e-08 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 2e-08 | |
| cd04021 | 125 | cd04021, C2_E3_ubiquitin_ligase, C2 domain present | 3e-08 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 3e-08 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 5e-08 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 6e-08 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 6e-08 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 9e-08 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 9e-08 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 1e-07 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 1e-07 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 2e-07 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 2e-07 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 3e-07 | |
| cd08678 | 126 | cd08678, C2_C21orf25-like, C2 domain found in the | 5e-07 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 5e-07 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 6e-07 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 6e-07 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 1e-06 | |
| cd08393 | 125 | cd08393, C2A_SLP-1_2, C2 domain first repeat prese | 1e-06 | |
| cd08406 | 136 | cd08406, C2B_Synaptotagmin-12, C2 domain second re | 1e-06 | |
| cd04014 | 132 | cd04014, C2_PKC_epsilon, C2 domain in Protein Kina | 2e-06 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 3e-06 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 3e-06 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 5e-06 | |
| cd04048 | 120 | cd04048, C2A_Copine, C2 domain first repeat in Cop | 6e-06 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 8e-06 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 2e-05 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 3e-05 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 3e-05 | |
| cd08389 | 124 | cd08389, C2A_Synaptotagmin-14_16, C2A domain first | 3e-05 | |
| cd08408 | 138 | cd08408, C2B_Synaptotagmin-14_16, C2 domain second | 5e-05 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 6e-05 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 7e-05 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 7e-05 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 8e-05 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 2e-04 | |
| cd04029 | 125 | cd04029, C2A_SLP-4_5, C2 domain first repeat prese | 2e-04 | |
| cd08409 | 137 | cd08409, C2B_Synaptotagmin-15, C2 domain second re | 4e-04 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 5e-04 | |
| PLN02952 | 599 | PLN02952, PLN02952, phosphoinositide phospholipase | 7e-04 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 8e-04 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 0.001 | |
| cd08395 | 120 | cd08395, C2C_Munc13, C2 domain third repeat in Mun | 0.001 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.002 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 0.002 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 0.002 | |
| cd08400 | 126 | cd08400, C2_Ras_p21A1, C2 domain present in RAS p2 | 0.002 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 0.002 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 0.003 | |
| PLN02223 | 537 | PLN02223, PLN02223, phosphoinositide phospholipase | 0.003 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 0.003 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 0.004 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 0.004 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 3e-45
Identities = 119/503 (23%), Positives = 208/503 (41%), Gaps = 63/503 (12%)
Query: 2 GVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVK-NPEIRPLVERDSETLQQMLPEIP 60
V S IFG+ GF S I ++ + IR LV++ E ++ L
Sbjct: 165 SVASWIFGYLGFSFA--SLFFIILVTMYVYRTCIKRVRRNIRDLVQQ--ELSEEKLEN-- 218
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
DY+ V+WLN FL+ WP ++ +I + + +AE IP + I+++ + TL
Sbjct: 219 ------DYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTL 271
Query: 121 GTLPPTFQGMKVYV-TDEKELIMEPCLKWAANPN-------------------VTIGVKA 160
G+ PP G++ Y T+ ++M+ + + V G
Sbjct: 272 GSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISLVVKKGKSF 331
Query: 161 FGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVG-----AD 215
+ V DL + R+ ++ L+ +P + L+E P DF L +G D
Sbjct: 332 GSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGVD 390
Query: 216 LMSIPGLYRFVQELIKTQVANMYLWPKTLEVPILDPSKAYR-RPVGILHVKVVKAMNLKK 274
+ +IPGL RF+QE+I + + M L P +L + I +G++ VK+ A LKK
Sbjct: 391 IFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKK 450
Query: 275 KDLL--GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 332
D G DPY+ + D++ KT VK LNP WN E + + + + + L++YD
Sbjct: 451 SDSTINGTVDPYITVT-FSDRVIG-KTRVKKNTLNPVWN-ETFYILLNSFTDPLNLSLYD 507
Query: 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK 392
+ +G + L L + P K + L N K+ G+L + + P
Sbjct: 508 FNSFKSDKVVGSTQLDLALLH-QNPVKK--NELYEFLR----NTKNVGRLTYDLRFFPVI 560
Query: 393 EEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYAR---ILFRGEER 449
E+ E + + E++ G+L V + E + ++ E
Sbjct: 561 EDKK-----ELKGSVEPLEDSNT--GILKVTLREVKALDELSSKKDNKSAELYTNAKEVY 613
Query: 450 KTKHVKKNRDPRWEEEFQFMLEE 472
T +K P W ++ ++ +
Sbjct: 614 STGKLKFTNHPSWNLQYNVLVTD 636
|
Length = 1227 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-26
Identities = 38/83 (45%), Positives = 49/83 (59%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
L V V+ A NL KDL G SDPYVK+ + K +KKT V LNP WNE + F V P
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 322 ESQAVELAVYDWEQVGKHDKMGM 344
E + + VYD+++ GK D +G
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGE 83
|
Length = 85 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 7e-26
Identities = 41/100 (41%), Positives = 54/100 (54%)
Query: 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD 320
L VK++ A NL KD G SDPYVK+ + D KKT V LNP WNE + F V
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 321 PESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
PE +E+ VYD ++ G+ D +G +PL +L K
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEK 100
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Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 8e-26
Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
L V V++A NL KDL G SDPYVK+ + KT V LNP WNE + F V DP
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSL--GGKQKFKTKVVKNTLNPVWNETFEFPVLDP 58
Query: 322 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE-EPSVKTLDL 364
ES + + V+D ++ K D +G +PL EL + L L
Sbjct: 59 ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
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The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 1e-20
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
L V V+ A NL D G SDP+VK + +K+ KT K LNP WNE + V
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKV--FKTKTIKKTLNPVWNESFEVPVPSR 58
Query: 322 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
+++ VYDW++ GK D +G + L +L PEE + TL L
Sbjct: 59 VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPL 101
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 9e-19
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKI----TEDKLPSKKTTVKHKNLNPEWNEEYNF 316
IL VKV+ ++L KKD+ GASDPYVK+ + ++ S +T K LNP+WNEE+ F
Sbjct: 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60
Query: 317 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEP 357
V +P + V+D ++ + D +G VPL L E P
Sbjct: 61 RV-NPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETP 100
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 2e-18
Identities = 40/97 (41%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
Y G L V +++A NLKK D+ G SDPYVK+ + ++ +L KKTT+K + LNP +NE
Sbjct: 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNE 69
Query: 313 EYNFTVRDPESQAVEL--AVYDWEQVGKHDKMGMNVV 347
++F V + Q V L V D++++GK+D +G V+
Sbjct: 70 SFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 3e-18
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 318
+G+L V+VV+ NL +D SDPYV L + K+ KT V KNLNP WNEE +V
Sbjct: 1 LGLLKVRVVRGTNLAVRDFTS-SDPYVVLTLGNQKV---KTRVIKKNLNPVWNEELTLSV 56
Query: 319 RDPESQAVELAVYDWEQVGKHDKMG 343
+P + ++L V+D + K D MG
Sbjct: 57 PNPMAP-LKLEVFDKDTFSKDDSMG 80
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 7e-16
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPEWNEE---YNF 316
LH +++A LK D G SDPYVKL + K +T HK NPE+NE Y
Sbjct: 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76
Query: 317 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
T D + + + L V D ++ G +D +G +PLK+L P +
Sbjct: 77 TEEDIQRKTLRLLVLDEDRFG-NDFLGETRIPLKKLKPNQ 115
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 9e-16
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL-PSK-KTTVKHKNLNPEWNE 312
Y L V +++ +NL D G SDP+VKL + D SK KT VK K LNPE+NE
Sbjct: 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNE 67
Query: 313 EYNFTVRDPE--SQAVELAVYDWEQVGKHD 340
E+ + ++ + + +E+ V+D + GK +
Sbjct: 68 EFFYDIKHSDLAKKTLEITVWDKDI-GKSN 96
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-15
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 311
S +Y L +K++KA+ L KD G SDP+VK+ + DK +T VK KNLNP WN
Sbjct: 8 SVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 67
Query: 312 EEYNF---TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
E + F + + + L V D+++ ++D +G +PL ++ E DL
Sbjct: 68 ETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 4e-15
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
G L VKV++A L D+ G SDP+ L++ +L +T +K LNPEWN+ + F ++
Sbjct: 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARL---QTHTIYKTLNPEWNKIFTFPIK 57
Query: 320 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSR 379
D +E+ VYD ++ K + +G +PL + E LK+ L +++
Sbjct: 58 DIHD-VLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERKWYA---LKDKKLRT----RAK 109
Query: 380 GQLVVEFIY 388
G +++E
Sbjct: 110 GSILLEMDV 118
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 4e-15
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK--TTVKHKNLNPEWNEEYNFTVR 319
L V +++A +L D+ G SDPYVK+ + DK KK T V K LNP +NE + F V
Sbjct: 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFTFKVP 75
Query: 320 DPESQAVEL--AVYDWEQVGKHDKMGMNVVPL 349
E L +VYD+++ KHD +G VPL
Sbjct: 76 YSELGNKTLVFSVYDFDRFSKHDLIGEVRVPL 107
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 4e-15
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 260 GILHVKVVKAMNLKKKDLL------GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEE 313
G+L + V++A +L KD G SDPYV +++ K+ V +NLNP+WNE
Sbjct: 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTF---KSKVIKENLNPKWNEV 57
Query: 314 YNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKE 351
Y V + Q +E+ ++D E K D +G + L
Sbjct: 58 YEAVVDEVPGQELEIELFD-EDPDKDDFLGRLSIDLGS 94
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 5e-15
Identities = 39/124 (31%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 247 PILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNL 306
L S Y + +GIL+VK+++A NL+ +D G +DPY K+++ D+ +K++ + K L
Sbjct: 3 GELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTL 62
Query: 307 NPEWNEEYNFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
NPE++E + F V + + +E+ +YD++Q + + +G+ +PL E+ E LDL
Sbjct: 63 NPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEK----LDL 118
Query: 365 LKNM 368
+ +
Sbjct: 119 WRKI 122
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-14
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 260 GILHVKVVKAMNLKKKDL--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT 317
G+L V VV+A +L KD G SDPY L + + KT LNP+WN F
Sbjct: 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRF---KTQTIPNTLNPKWNYWCEFP 57
Query: 318 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
+ ++Q ++L ++D ++ D +G + L+E+
Sbjct: 58 IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEV 92
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-14
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVR 319
L V V+KA NL D G SDPYVK+ + + KL KKT+VK LNP +NE ++F V
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 320 DPESQAV--ELAVYDWEQVGKHDKMG 343
+ + V + V D + VG+++ +G
Sbjct: 76 AEQLEEVSLVITVVDKDSVGRNEVIG 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 2e-14
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVK--LKITEDKLPSKKTTVKHKNLNPE 309
S Y + V ++KA NLK D+ G SDPYVK L + ++ KKT +K + LNP
Sbjct: 7 SLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV 66
Query: 310 WNEEYNFTV-----RDPESQAVELAVYDWEQVGKHDKMG 343
+NE + F + R+ + + V D +++ ++D +G
Sbjct: 67 FNESFIFNIPLERLRE---TTLIITVMDKDRLSRNDLIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 3e-14
Identities = 45/170 (26%), Positives = 65/170 (38%), Gaps = 13/170 (7%)
Query: 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT 317
G L + + NL D G SDP+VKL + E + KT V K LNP WNEE+
Sbjct: 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSV--YKTKVVKKTLNPVWNEEFTIE 1095
Query: 318 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEK 377
V + + + V DW+ K+D +G + L +L P + N+ L+
Sbjct: 1096 VLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTT------NSNIPLDGKTFIV 1149
Query: 378 SRGQLVVEFIYKPFKEEDLPKSFE--ESQTVQKAPENTPAGGGLLVVIVH 425
G L F ++ K E +K T G V
Sbjct: 1150 LDGTLHPGFNFRS-KYALNVSRKEGILGDIAKKV--GTGLKAGSTTVGSV 1196
|
Length = 1227 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 3e-14
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLK-ITEDKLPSK-KTTVKHKNLNPEWNEEYNFTVR 319
L V+V +A NL D G SDPYVKLK I + K +K KT K LNP WNE + F ++
Sbjct: 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74
Query: 320 DP-ESQAVELAVYDWEQVGKHDKMGMNVVPLKELT 353
+ + + + V+DW++ ++D MG + EL
Sbjct: 75 PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELI 109
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 4e-14
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
L V++A +L KD G SDP+V++ + +T+V K+ P WNE + F + +
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFY---NGQTLETSVVKKSCYPRWNEVFEFELMEG 58
Query: 322 ESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
+ + V+DW+ V K+D +G V ++ L
Sbjct: 59 ADSPLSVEVWDWDLVSKNDFLGKVVFSIQTL 89
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 6e-14
Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 309
S Y G L + ++KA NLK D+ G SDPYVK+ + + +L KKT+VK LNP
Sbjct: 6 SLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPT 65
Query: 310 WNEEYNFTVRDPESQAVEL--AVYDWEQVGKHDKMGM 344
+NE F V V L AV D+++VG ++ +G+
Sbjct: 66 YNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGV 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 8e-14
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
L + + + NL +D G SDPYVK K K K T+ +KNLNP W+E++ + D
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKY-GGKTVYKSKTI-YKNLNPVWDEKFTLPIEDV 59
Query: 322 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
+Q + + V+D+++ D MG V L L +P+ L L
Sbjct: 60 -TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-13
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 264 VKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPES 323
V VV+A NL+ KD G SDPY+K+K+ + K+ + + LNP + + + P +
Sbjct: 4 VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLPGN 62
Query: 324 QAVELAVYDWEQVGKHDKMGMNVVPL 349
++++V D++ +G D +G V+ L
Sbjct: 63 SILKISVMDYDLLGSDDLIGETVIDL 88
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 4e-13
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD 320
++ + +V+ NL D G SDPYVK ++ +K SK V K LNP+W E+++ + D
Sbjct: 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSK---VCSKTLNPQWLEQFDLHLFD 57
Query: 321 PESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRG 380
+SQ +E+ V+D + K + +G + L L E+ L+L E G
Sbjct: 58 DQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL-----------EDGEG 106
Query: 381 QLV 383
L+
Sbjct: 107 SLL 109
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 5e-13
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS-----KKTTVKHKNLNPEWNEEYNF 316
L V+V++A N+ K DLL D YV+L LP+ K+T ++NP WNE + F
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVEL-----WLPTASDEKKRTKTIKNSINPVWNETFEF 56
Query: 317 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 376
++ +EL V D E D +G + + +L E T L N
Sbjct: 57 RIQSQVKNVLELTVMD-EDYVMDDHLGTVLFDVSKLKLGEKVRVTFSL----------NP 105
Query: 377 KSRGQLVVEF 386
+ + +L VEF
Sbjct: 106 QGKEELEVEF 115
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 4e-12
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
L V+VV A +L KD G+S YV+L K K+T K K+LNP WNE+ F V DP
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDP 58
Query: 322 E---SQAVELAVYD 332
+ +E+ VY+
Sbjct: 59 SRLSNLVLEVYVYN 72
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 7e-12
Identities = 32/80 (40%), Positives = 41/80 (51%)
Query: 264 VKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPES 323
+++V+A NLK G SDPYV L T K KT + LNP W+EE+ V E
Sbjct: 5 IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64
Query: 324 QAVELAVYDWEQVGKHDKMG 343
+ V+D VGKHD G
Sbjct: 65 LWISATVWDRSFVGKHDLCG 84
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-11
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 420 LVVIVHEAQD---VEGKHHTNPYARILFRGEE---RKTKHVKKNRDPRWEEEFQFMLEEP 473
L V V A++ + ++PY ++ G++ +KTK VK +P W E F F + P
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 474 PTNDRLHVEV 483
L +EV
Sbjct: 61 EL-AELRIEV 69
|
Length = 85 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-11
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPE 309
S Y+ L V V+KA +L K D+ G +DPYVK+ + + ++ KKT VK LNP
Sbjct: 7 SLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPV 66
Query: 310 WNEEYNFTVRDPESQ--AVELAVYDWEQVGKHDKMG 343
+NE + F + E + +VE V D ++V K++ +G
Sbjct: 67 FNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 2e-11
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 267 VKAMNLKKKDLLGASDPYVKL-KITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVR---- 319
L KKD G SDP++++ + +ED + +T V LNP W FT+
Sbjct: 7 FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP---FTIPLQKL 63
Query: 320 ---DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTL 362
D + +++ VYD++ GKHD +G L EL P L
Sbjct: 64 CNGDYDRP-IKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLEFEL 108
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-11
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 34/136 (25%)
Query: 248 ILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI-------TEDKLPSKK-- 298
+L+ + P+ +L V V++A L KD+ G SDPY L I +K +K
Sbjct: 16 LLERVREAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSH 75
Query: 299 -----------------TTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341
T VK + LNP WNE + F V D + + L ++D HD
Sbjct: 76 RKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWD------HDD 129
Query: 342 --MGMNVVPLKELTPE 355
+G +PLK+L
Sbjct: 130 DFLGCVNIPLKDLPSC 145
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 5e-11
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 10/128 (7%)
Query: 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT 317
P + V V A L K+D G +DPYV +K + + ++ V+ L+PE++ + F
Sbjct: 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESV---RSPVQKDTLSPEFDTQAIFY 57
Query: 318 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEK 377
+ P S QV + + + L+ + +TL L +
Sbjct: 58 RKKPRSPIK-------IQVWNSNLLCDEFLGQATLSADPNDSQTLRTLPLRKRGRDAAGE 110
Query: 378 SRGQLVVE 385
G + V+
Sbjct: 111 VPGTISVK 118
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-10
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD 320
+L V + A NL PYV+L + + ++K+ VK + NP W E + F VR+
Sbjct: 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRN 57
Query: 321 PESQAVELAVYDWEQVGKHDK-MGMNVVPLKELTPEE 356
PE+Q +E+ V D K K +G +PL EL E
Sbjct: 58 PENQELEIEVKD----DKTGKSLGSLTLPLSELLKEP 90
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-10
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 262 LHVKVVKAMNLKKKDLLGA-SDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD 320
L V ++KA NL + A DP+VK+ + D+ S ++ VK K NP ++E + F V
Sbjct: 16 LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSF 75
Query: 321 PESQA--VELAVYDWEQVGKHDKMGMNVVPLKELTP 354
E Q + L+VYD ++ +H +G + PLK+L
Sbjct: 76 KELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDL 111
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-10
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 17/107 (15%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLK-ITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR- 319
L V+V++ +L K G DP+ ++ K +K+T VK K NP ++E + F +
Sbjct: 1 LSVRVLECRDLALKSN-GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 320 --------------DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
D E + + ++ V D +G +PL+ L
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGL 106
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-10
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
+ + V+ A L K+DL DP+ + + D + T V K L+P+WNE ++ TV
Sbjct: 2 VRLTVLCADGLAKRDLFRLPDPFAVITV--DGGQTHSTDVAKKTLDPKWNEHFDLTVGP- 58
Query: 322 ESQAVELAVYDWEQVGKHDK--MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSR 379
S + + V+D ++ K D+ +G + + P + + L+ L N R
Sbjct: 59 -SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLR--KLKKSDNLSVR 115
Query: 380 GQLVVEF 386
G++VV
Sbjct: 116 GKIVVSL 122
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-10
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 266 VVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR---DPE 322
VV NL L G D K+ K KKT V LNP WNE + + + DP+
Sbjct: 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPD 56
Query: 323 SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQL 382
+E+ V D+E+VG++ +G V L++L V L L D + +
Sbjct: 57 ES-LEIVVKDYEKVGRNRLIGSATVSLQDL------VSEGLLEVTEPLLDSNGRPTGATI 109
Query: 383 VVEFIYKP 390
+E Y+P
Sbjct: 110 SLEVSYQP 117
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 5e-10
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
Query: 259 VGILHVKVVKAMNLKKKDLLGAS-DPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT 317
+G+L V + A LK D++G + DPYV I+ + +T VK NP WNE
Sbjct: 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRE-LARTKVKKDTSNPVWNETKYIL 59
Query: 318 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK--TLDLLKNMDLNDGQN 375
V ++ + L VYD+ K +G L L + P + T +LL+ N
Sbjct: 60 VNS-LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLL-QNPEQENLTKNLLR--------N 109
Query: 376 EKSRGQL 382
K G+L
Sbjct: 110 GKPVGEL 116
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 6e-10
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 261 ILHVKVVKAMNLKKKDLLGAS--DPYVKLKIT---EDKLPSKKTTVKHKN-LNPEWNEEY 314
L +K++ L K S DPYV+++I D KT V N NP WNE +
Sbjct: 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62
Query: 315 NFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
F V PE + VYD + G D +G +PL L
Sbjct: 63 EFDVTVPELAFLRFVVYDED-SGDDDFLGQACLPLDSL 99
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 9e-10
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 420 LVVIVHEAQDVEGKH---HTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPT 475
L V V EA+++ K ++PY ++ G++ KTK VK +P W E F+F + +P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPE- 59
Query: 476 NDRLHVEVC 484
+D L VEV
Sbjct: 60 SDTLTVEVW 68
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-09
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL--PSKKTTVKHKNLNPEWNE--EYNFT 317
L V V K NL D DPYV+L + DK +KT+VK NLNP ++E E+ +
Sbjct: 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77
Query: 318 VRDPESQAVELAVYDWEQVGKHDK--MGMNVVPLKELTPEEPSVKTLDL 364
+ + + + +++AV + + +K +G ++ L +L + + DL
Sbjct: 78 LEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 8e-09
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS--KKTTVKHKNLNPEWNE--EYN 315
G LHV V +A NL G SD +VK + DK +KT V K++NP WN Y+
Sbjct: 27 GELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYD 86
Query: 316 -FTVRDPESQAVELAVYDWEQVGKHDKMG 343
+ D +EL V+D +++ +D +G
Sbjct: 87 GVSPEDLSQACLELTVWDHDKLSSNDFLG 115
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-08
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEE---RKTKHVKKNRDPRWEEEFQFMLEE 472
L V + A+++ K ++PY ++ G+ +KTK VK +P W E F+F +
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEV-P 59
Query: 473 PPTNDRLHVEVCS 485
PP L +EV
Sbjct: 60 PPELAELEIEVYD 72
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 2e-08
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
+ + VV A L KD G SDPYV +++ + K K+T +NLNP WNE+++F +
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHN- 58
Query: 322 ESQAVELAVYD 332
S +++ V+D
Sbjct: 59 SSDRIKVRVWD 69
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-08
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
L + V A LK DPYV+ +T D P KKT V K NP+WNE FTV
Sbjct: 4 LQITVESA-KLKSNSKSFKPDPYVE--VTVDGQPPKKTEVSKKTSNPKWNEH--FTVLVT 58
Query: 322 ESQAVELAVYD 332
+E V+
Sbjct: 59 PQSTLEFKVWS 69
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-08
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Query: 254 AYRRPVGILHVKVVKAMNL-----KKKDLLGASDPYVKLKITEDKLPS--KKTTVKHKNL 306
+Y G L V + + NL KKK S+PYVK+ + DK +KT+VK
Sbjct: 8 SYNYKTGSLEVHIKECRNLAYADEKKK----RSNPYVKVYLLPDKSKQSKRKTSVKKNTT 63
Query: 307 NPEWNEE--YNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPL 349
NP +NE Y+ + E++ ++L+V+ ++ G++ +G +PL
Sbjct: 64 NPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPL 108
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-08
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED----KLPSKKTTVKHKNLNPEW 310
YR L V+++ A NL D G+SDP+VK+++ +P+ KT VK K L P +
Sbjct: 11 YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLF 70
Query: 311 NEEYNFTVRDPESQA----VELAVYDWEQVGKHDKMGMNVVPLKEL 352
+E + F V + + V D++ +G +D G +PL ++
Sbjct: 71 DESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-08
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 420 LVVIVHEAQDVEGKHHTN---PYARILF-----RGEERKTKHVKKNRDPRWEEEFQFMLE 471
L+V VH+ +++ ++ PY R+ + RKT K N +P ++E F+F +
Sbjct: 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77
Query: 472 EPPTNDR-LHVEVCSVSSRIGL 492
R L V V + S +
Sbjct: 78 LEELKRRTLDVAVKNSKSFLSR 99
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 6e-08
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 318
+G L V +V+ +LK + G SDPY ++ + KT V LNP+WN F V
Sbjct: 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQ---EHKTKVVSDTLNPKWNSSMQFFV 70
Query: 319 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE-----PSVKTLDL 364
+D E + + V+D + D +G + + ++ E P K L L
Sbjct: 71 KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL 121
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 9e-08
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
L++++V+ NL KD+ G+SDPY +K+ D +T K LNP W EEY TV P
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKV--DNEVIIRTATVWKTLNPFWGEEY--TVHLP 57
Query: 322 ES-QAVELAVYDWEQVGKHDKMG 343
V V D + + + D +G
Sbjct: 58 PGFHTVSFYVLDEDTLSRDDVIG 80
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 9e-08
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 260 GILHVKVVKAMNLKKKDL-LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 318
G+L V + +A +L K D G+SDPYV + P T + K+LNP W E + V
Sbjct: 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60
Query: 319 RDPESQAVE---LAVYDWEQVGKHDKMGMNVVPLKEL 352
E +A E ++D ++ D++G + LKEL
Sbjct: 61 TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKEL 97
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-07
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 438 PYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEV 483
A++ FRG ++KT+ ++ +P W E F++ L P ++ L + V
Sbjct: 17 RIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVV 63
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTV-KHKNLNPEWNEEYNFTV 318
G L V ++ A L+ D LG DPYV I + + +K+ V K NPEWNE++ FTV
Sbjct: 1 GTLEVLLISAKGLQDTDFLGKIDPYV---IIQCRTQERKSKVAKGDGRNPEWNEKFKFTV 57
Query: 319 RDPESQAV---ELAVYDWEQVGKHDKMGMNVVPLKEL 352
P L + D + D +G + LK L
Sbjct: 58 EYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
G+L + + KA +LK + +G DPYV ++ + + +T LNP W+E V
Sbjct: 1 GVLRLHIRKANDLKNLEGVGKIDPYV--RVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT 58
Query: 320 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL------------TPEEPSVKTLDLLKN 367
P +Q + L V D+E+VGK +G + + +L EE +K L LK
Sbjct: 59 SP-NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGKYVEYDDEEERLKRLLSLKG 117
Query: 368 M 368
+
Sbjct: 118 V 118
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-07
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLK-ITEDKL-PSKKTTVKHKNLNPEWNE 312
Y G L+V +++A L + D+ SDP+VK++ + KL +KKT+ ++P +NE
Sbjct: 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNE 68
Query: 313 EYNFTVRDPESQAVEL--AVYDWEQVGKHDKMGMNVV 347
++F V E + V L VY +D +G V+
Sbjct: 69 SFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVI 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK--TTVKHKNLNPEWNE 312
Y + L V V++A +L +D +PYVK+ + D+ K T K LNPEWN+
Sbjct: 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQ 70
Query: 313 --EY-NFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPL 349
EY N + + +E+ V+D+++ G++D +G V+ L
Sbjct: 71 TFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDL 110
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-07
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK-KTTVKHKNLNPEWNEEYNFTVRD 320
L VK +KA L + G+S+PY L++ D+ P K +++ + NP W+E + F +
Sbjct: 1 LLVKNIKANGLSEA--AGSSNPYCVLEM--DEPPQKYQSSTQKNTSNPFWDEHFLFEL-S 55
Query: 321 PESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRG 380
P S+ + VYD + +G+ +VP EL + L + + G
Sbjct: 56 PNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQG----RPYEGDSVSG 111
Query: 381 QLVVEFIY 388
+ VEF++
Sbjct: 112 SITVEFLF 119
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-07
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 13/130 (10%)
Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHK-NLNPEWNEEYNFTV 318
G L V V+KA NL K L DPY L+I +KKT + +PEW+EE F +
Sbjct: 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG---VTKKTKTDFRGGQHPEWDEELRFEI 57
Query: 319 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKS 378
+ + +++AV+D + K D +G V L E +L +
Sbjct: 58 TEDKKPILKVAVFD-DDKRKPDLIGDTEVDLSPALKEGEFDDWYEL--------TLKGRY 108
Query: 379 RGQLVVEFIY 388
G++ +E +
Sbjct: 109 AGEVYLELTF 118
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 6e-07
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 419 LLVVIVHEAQD---VEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPT 475
LL V + A++ + +PY + +K+K ++ +P WEE F F L P
Sbjct: 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTF-LVRNPE 59
Query: 476 NDRLHVEVC 484
N L +EV
Sbjct: 60 NQELEIEVK 68
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 6e-07
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 298 KTTVKHKNLNPEWNEEYNFTVRDPESQ-AVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
+T+ + LNP +NE F V E ++ V D ++ +D + + ++EL
Sbjct: 40 RTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99
Query: 357 PSVK 360
P
Sbjct: 100 PQPD 103
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 263 HVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT----- 317
V V++A L K G +D YV +++ ++K T+VK K +P W EE +F
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKY---STSVKEKTTSPVWKEECSFELPGLL 58
Query: 318 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP--EEPSVKTLDLLKNMDLNDGQN 375
+ ++L V +G +G +PL +L + L + G++
Sbjct: 59 SGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKL----ESKPGKD 114
Query: 376 EKSRGQLVVEF 386
+K RG++ V+
Sbjct: 115 DKERGEIEVDI 125
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 262 LHVKVVKAMNLKKKDL-LGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTV 318
LHV V++ +L D SDPYVK + DK +KT+VK K LNP +NE + V
Sbjct: 17 LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKV 76
Query: 319 RDPESQAVELAVYDWEQVGKHDKMGMNV 346
E L + W D +G N
Sbjct: 77 EREELPTRVLNLSVWH----RDSLGRNS 100
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-06
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVR 319
L V VVKA NL + +DP+VK+ + +D K+ KKT+VK + NP +NE F+V
Sbjct: 17 LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVP 76
Query: 320 DPESQAVELAV 330
Q + L V
Sbjct: 77 AIVLQDLSLRV 87
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 20/85 (23%)
Query: 260 GILHVKVVKAMNLK-------------KKDLLGASDPYVKLKITEDKLPSKKTTVKHKNL 306
G L +K+ +A++LK LL DPYV + + + + KT+ K K
Sbjct: 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLL---DPYVSIDVDDTHI--GKTSTKPKTN 58
Query: 307 NPEWNEEYNFTVRDPESQAVELAVY 331
+P WNEE FT + +EL V+
Sbjct: 59 SPVWNEE--FTTEVHNGRNLELTVF 81
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 274 KKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYD 332
KK+L+ DPYV++ K+ KT+VK + NPEWNE+ F P + +++ + D
Sbjct: 31 KKELV---DPYVEVSFAGQKV---KTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRD 84
Query: 333 WEQVGKHDKMGMNVVPL 349
W++VG D +G + + L
Sbjct: 85 WDRVGNDDVIGTHFIDL 101
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
Y+ G L V V+ A NL D DPYVK + D K +KT V K NP +NE
Sbjct: 10 YKN--GTLFVMVMHAKNLPLLDG-SDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNE 66
Query: 313 E--YN-FTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 360
Y+ V D + + ++++V+ + + +++ +G +PLK+L + + K
Sbjct: 67 MLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEK 117
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-06
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 386 FIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFR 445
FI+K ++ EDLP+ ++ + + E +++ +PY + F
Sbjct: 2 FIFKIYRAEDLPQM------------DSGIMANVKKAFLGEKKEL-----VDPYVEVSFA 44
Query: 446 GEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEV 483
G++ KT K + +P W E+ F PP +R+ +++
Sbjct: 45 GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQI 82
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-06
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 26/126 (20%)
Query: 267 VKAMNLKKKDLLGASDPYVKLKITEDKLPSKK------TTVKHKNLNPEWNE----EYNF 316
+ NL KD+L SDP+V + + S + T V NLNP++ +Y F
Sbjct: 7 ISCRNLLDKDVLSKSDPFVVVYVKTG--GSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYF 64
Query: 317 TVRDPESQAVELAVYD----WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND 372
E Q + VYD + + HD +G L E+ V + + L
Sbjct: 65 ----EEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI------VSSPGQKLTLPLKG 114
Query: 373 GQNEKS 378
G+ + +
Sbjct: 115 GKGKGT 120
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 8e-06
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 424 VHEAQDVEGKHH---TNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480
V EA+D+ K ++P+ R+ + G+ +T VKK+ PRW E F+F L E + L
Sbjct: 6 VLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA-DSPLS 64
Query: 481 VEV 483
VEV
Sbjct: 65 VEV 67
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-05
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 263 HVKVVKAMNLKKKDLLGA-SDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
V+V++A + L+G DP VK+++ K K T+VK P +NE + F +
Sbjct: 7 RVRVIEA-----RQLVGGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHES 58
Query: 322 ES----QAVELAVYDWEQVGKHDKMG 343
+ ++++VYD + +G
Sbjct: 59 PDELFDKIIKISVYDSRSLRSDTLIG 84
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 262 LHVKVVKAMNLKKKDL-LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNF 316
L V +++ +L D G SDPYVKL++ +K KT V K NP ++E + F
Sbjct: 18 LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTF 73
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPY--VKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
L V+V++ +L K+ G DPY V L + K +K+T VK K NP+++E + F V
Sbjct: 2 LSVRVIECSDLALKN--GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVT 59
Query: 320 DPESQAVELAVYDWEQVGK--------HDKMGMNVVPLKELT 353
S + E K H MG V L E+
Sbjct: 60 IDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVR 101
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 249 LDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK----KTTVKHK 304
LD + Y L V V++A ++ KD GAS V L + LPSK KT V+
Sbjct: 5 LDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVL----LPSKKQRAKTKVQRG 60
Query: 305 NLNPEWNEEYNFTVRDPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
NP +NE + F+ +PE + A+ +Y E++ K +G VVPL +L E
Sbjct: 61 P-NPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG 114
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 246 VPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSK-KTTVK 302
VP L Y G L V+V+K N K + A D YVKL + ++ + SK KT+++
Sbjct: 1 VPELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIR 60
Query: 303 HKNLNPEWNEEYNFTVRDPESQAVEL--AVYDWEQVGKHDKMG 343
+PE+ E + F V + V L +VY+ ++ + + +G
Sbjct: 61 RGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIG 103
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-05
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 420 LVVIVHEAQDV---EGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTN 476
LVV V +AQD+ +G+ ++ Y + F G++++T+ K+ +P W E+ F + +P
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61
Query: 477 DRLHVEV 483
L +EV
Sbjct: 62 SNLVLEV 68
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-05
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 420 LVVIVHEAQDVEGKHH--TNPYARI----LFRGEERKTKHVKKNRDPRWEEEFQFMLEEP 473
L V V E +D+ K + +P+AR+ + + ++TK KK +PR++E F F L
Sbjct: 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIG 60
Query: 474 --PTNDRLHVE---VCSVSSRIGLLHPKVLFQ 500
VE + R+ L H ++
Sbjct: 61 FSYEKKSFKVEEEDLEKSELRVELWHASMVSG 92
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-05
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 262 LHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN-EEYNFTVR 319
L V+VV A +L D +D +V++K + KT V K+LNP WN E + F V
Sbjct: 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVD 57
Query: 320 DPESQ--AVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS 358
D E Q +++ V D + +D +G + L L ++
Sbjct: 58 DEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSV 98
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-05
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTV-KHKNLNPEWNEEYNFTVR 319
L + ++ A +LK +L G Y + I D + T V + NP WNE F +
Sbjct: 1 TLEITIISAEDLKNVNLFGKMKVYAVVWI--DPSHKQSTPVDRDGGTNPTWNETLRFPLD 58
Query: 320 DPESQ----AVELAVYDWEQVGKHDK-MGMNVVPLKEL 352
+ Q A+ + VY E+ DK +G VPLK+L
Sbjct: 59 ERLLQQGRLALTIEVYC-ERPSLGDKLIGEVRVPLKDL 95
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
L+V+VVKA L ++DP V++K+ K +K + NPEWN+ + F+
Sbjct: 2 LYVRVVKARGLP----ANSNDPVVEVKLGNYKGSTKAIE---RTSNPEWNQVFAFSKDRL 54
Query: 322 ESQAVELAVYD 332
+ +E++V+D
Sbjct: 55 QGSTLEVSVWD 65
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPS--KKTTVKHKNLNP 308
S +Y L+V V + NL D S+PYVK + DK +KT++K NP
Sbjct: 7 SLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNP 66
Query: 309 EWNEEYNFTVRDPESQ----AVELAVYDWEQVGKHDKMGMNVVPL 349
+NE +++ SQ ++L+V+ +++ G++ +G +PL
Sbjct: 67 VYNETLKYSI--SHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPL 109
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVK--LKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
L V V++A L++ D + YVK L I + +KKT V +P +NE ++F V
Sbjct: 17 LTVVVLRARGLRQLDH-AHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVT 75
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 5e-04
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 273 KKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 332
+ G PY +L + + T VK K NP WN F V D V + V D
Sbjct: 5 TSESKTGLLSPYAELYLNGKLV--YTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKD 62
Query: 333 WEQVGKHDK-MGMNVVPLKEL 352
+HD +G + L +L
Sbjct: 63 --DRDRHDPVLGSVSISLNDL 81
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|178538 PLN02952, PLN02952, phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 297 KKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
KKT + N P WNEE++F + PE + + V +++ K D G +P+ EL P
Sbjct: 515 KKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPG- 573
Query: 357 PSVKTLDLLKNMDLNDGQNEKSRG-QLVVEFIY 388
++++ L+D + EK + +L++ FI+
Sbjct: 574 --------IRSVPLHDKKGEKLKNVRLLMRFIF 598
|
Length = 599 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 8e-04
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYN 315
RR + L V V++A L D ++D YVK+ K+T V N NP WN ++
Sbjct: 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVF---FGGQEKRTEVIWNNNNPRWNATFD 79
Query: 316 F-TVRDPESQAVELAVYD 332
F +V + V+D
Sbjct: 80 FGSVELSPGGKLRFEVWD 97
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
L +++++A NL K G DPY + + + ++ +T K LNP W EE+ F P
Sbjct: 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEV--ARTKTVEK-LNPFWGEEFVFDDPPP 55
Query: 322 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELT 353
+ L+ Y+ ++ K + + V L +L
Sbjct: 56 DVTFFTLSFYNKDKRSKDRDIVIGKVALSKLD 87
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176041 cd08395, C2C_Munc13, C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.001
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 264 VKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK----TTVKHKNLNPEWNEEYNFTV- 318
VKVV A +LK + G P+V++ + L KK T K+ N +P++NE + F +
Sbjct: 4 VKVVAANDLKWQTT-GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILG 62
Query: 319 --RDPESQAVELAVYDWEQVGKHDKM-GMNVVPLKELTPEEPSVKTLDLLKNMDLND 372
DPES + + V D+ + D++ G+ V+ L+++ L L + + +++
Sbjct: 63 NEDDPESYELHICVKDY-CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHMDE 118
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins.C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEE 313
Y P+G + V V KA +L+ + G SDPY + + L +T LNP WNE
Sbjct: 705 VYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN--NLVKYRTIYGSSTLNPIWNEI 762
Query: 314 YNFTVRDPESQAVELAVYDWEQVGK 338
V +Q + L D+E+ G
Sbjct: 763 LYVPVTSK-NQRLTLECMDYEESGD 786
|
Length = 1227 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 417 GGLLVVIVHEAQ-----DVEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEF 466
L V V EA+ D G ++PY ++ ++KTK +KK +P W E F
Sbjct: 12 DNKLTVEVREAKNLIPMDPNG--LSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETF 69
Query: 467 QFMLEEPPTNDRLHVEV 483
F L+ + RL +EV
Sbjct: 70 TFDLKPADKDRRLSIEV 86
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.002
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 417 GGLLVVIVHEAQDVEGKHHTN------PYARILFRGEERKTKHVK-KNRDPRWEEEFQFM 469
G L V+++ +G T+ PY I R +ERK+K K R+P W E+F+F
Sbjct: 1 GTLEVLLIS----AKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFT 56
Query: 470 LEEPPTNDRLH 480
+E P
Sbjct: 57 VEYPGWGGDTK 67
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 420 LVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEE-PPTNDR 478
L + V EA + KH +PY I + V++ +P W EE F+ ++ PP +
Sbjct: 6 LQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKVREGPNPVWSEE--FVFDDLPPDVNS 63
Query: 479 LHVEVCSVSSR 489
+ + + + R
Sbjct: 64 FTISLSNKAKR 74
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
L V V++A +L D + +VK ++ L ++ + +N NP WNEE F +P
Sbjct: 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTR--PSQTRNGNPSWNEELMFVAAEP 59
Query: 322 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP 354
+ L+V D K + +G V+PL ++
Sbjct: 60 FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIER 92
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.003
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 418 GLLVVIVHEAQDVEGKHH---------TNPYARILFRGEERKTKHVKKNRDPRWEEEFQF 468
G+L + V EAQD+ K ++PY + + K+K +K+N +P+W E ++
Sbjct: 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEA 60
Query: 469 MLEEPPTNDRLHVEV 483
+++E P + L +E+
Sbjct: 61 VVDEVPGQE-LEIEL 74
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|165867 PLN02223, PLN02223, phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.003
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 259 VGILHVKVVKA----MNLKKK-DLLGASDPYVKLKITEDKLPSK--KTTVKHKNLNPEWN 311
V IL VK+ ++ KK+ L D YV++ I K KTTVK+ P W
Sbjct: 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWG 467
Query: 312 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
EE+ F + P+ + VYD+E G +P+ EL
Sbjct: 468 EEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSEL 508
|
Length = 537 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 418 GLLVVIVHEA----QDVEGKHHTNPYARI-LFRGEERKTKHVKKNRDPRWEEEFQFMLEE 472
G L V + Q + TN + ++ L G R+TK V + P W+E F + +
Sbjct: 1980 GSLTVTIKRGNNLKQSMGN---TNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDS 2036
Query: 473 PPTNDRLHVEVCSVSSRIG 491
PP +LH+ C + G
Sbjct: 2037 PPKGQKLHI-SCKSKNTFG 2054
|
Length = 2102 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.004
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 420 LVVIVHEAQDVEGKHHT-NPYARI-----LFRGEERKTKHVKKNRDPRWEEEFQFMLEEP 473
L V V E D+ K+ T +PYA + + + ++TK KK +P+++E F F +
Sbjct: 2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTID 61
Query: 474 PTNDRLHVE-----VCSVSSRIGLLHPKVLFQFYF 503
+ ++ E + R+ L H + F
Sbjct: 62 SSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVF 96
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.004
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 415 AGGGLLVVIVHEAQDVEGKH--HTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEE 472
G L V V A + G + T+ Y ++ F G+E++T+ + N +PRW F F E
Sbjct: 25 RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVE 84
Query: 473 PPTNDRLHVEV 483
+L EV
Sbjct: 85 LSPGGKLRFEV 95
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 100.0 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 100.0 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.87 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.86 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.84 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.83 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.83 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.82 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.82 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.82 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.82 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.82 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.81 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.81 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.8 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.8 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.79 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.79 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.79 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.79 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.79 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.79 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.79 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.79 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.79 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.78 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.78 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.78 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.78 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.77 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.77 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.77 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.76 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.76 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.76 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.76 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.76 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.76 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.76 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.76 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.76 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.76 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.75 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.75 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.75 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.75 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.75 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.75 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.75 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.74 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.74 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.74 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.74 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.73 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.73 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.73 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.73 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.73 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.73 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.72 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.72 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.72 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.72 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.72 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.71 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.71 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.71 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.71 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.71 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.71 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.7 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.7 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.7 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.7 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.7 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.7 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.7 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.7 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.7 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.69 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.69 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.69 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.69 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.69 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.68 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.68 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.68 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.68 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.68 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.68 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.67 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.67 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.67 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.67 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.67 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.67 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.67 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.66 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.66 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.66 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.66 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.66 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.66 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.66 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.66 | |
| PLN03008 | 868 | Phospholipase D delta | 99.66 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.65 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.65 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.65 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.65 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.65 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.65 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.65 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.65 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.64 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.64 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.64 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.64 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.63 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.63 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.63 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.63 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.63 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.63 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.63 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.63 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.63 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.63 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.62 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.62 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.62 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.62 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.62 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.62 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.62 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.62 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.62 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.62 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.61 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.61 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.61 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.61 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.61 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.61 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.59 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.59 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.59 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.59 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.58 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.58 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.58 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.57 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.57 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.57 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.57 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.57 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.57 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.57 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.55 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.55 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.54 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.54 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.54 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.53 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.53 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.53 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.52 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.52 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.52 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.52 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.51 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.51 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.5 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.5 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.49 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.48 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.48 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.48 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.48 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.47 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.46 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.44 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.42 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.41 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.4 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.39 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.38 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.37 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.37 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.37 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.35 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.35 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.35 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.34 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.34 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.33 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.33 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.29 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.26 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.24 | |
| PLN03008 | 868 | Phospholipase D delta | 99.18 | |
| PF10296 | 91 | DUF2404: Putative integral membrane protein conser | 99.17 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.14 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.14 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.14 | |
| PLN02270 | 808 | phospholipase D alpha | 99.12 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.05 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.03 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.97 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.96 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.95 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.93 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 98.9 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.88 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.87 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.86 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.81 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.78 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.77 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.77 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.74 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.72 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.69 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.69 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.63 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.63 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 98.62 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.6 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.54 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 98.52 | |
| PLN02270 | 808 | phospholipase D alpha | 98.49 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.49 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.48 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.23 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 98.14 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 98.05 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 98.02 | |
| KOG3532 | 1051 | consensus Predicted protein kinase [General functi | 97.9 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.73 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 97.72 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 97.72 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.64 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.55 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.54 | |
| PLN02352 | 758 | phospholipase D epsilon | 97.37 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.27 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.21 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 96.8 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.78 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 96.49 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 96.3 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 96.15 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 96.05 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.69 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 95.68 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.4 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 95.33 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.23 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 95.08 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 94.92 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 94.81 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 94.29 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 94.15 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 94.07 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.98 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 93.89 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 93.6 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 93.21 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 92.39 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 92.29 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 91.86 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 91.44 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 91.32 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 90.03 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 87.46 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 86.69 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 83.84 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 83.28 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 80.17 |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=521.43 Aligned_cols=469 Identities=26% Similarity=0.494 Sum_probs=380.6
Q ss_pred cchhhhHHhhhhhHHHHHHHHHhheeeeEEeccCCCCcccccccccCHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHH
Q 009797 2 GVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLELM 81 (525)
Q Consensus 2 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~~~~~E~~~WlN~~l~~~ 81 (525)
|++||++|++||+++.++.+++.. .++|.+..++-++-+|.+.. ++.-++-+. .|+||+||||.+|+++
T Consensus 165 ~v~Swifg~~~fs~~slffii~~~-~~vY~~~~~rv~rnird~v~--~~~~~ek~~--------nd~ESveWLNtfL~Kf 233 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIILVT-MYVYRTCIKRVRRNIRDLVQ--QELSEEKLE--------NDYESVEWLNTFLQKF 233 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHhhh--------cchhHHHHHHHHHHhh
Confidence 689999999999977765544332 23344422222223343321 111122221 5999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCceeeeeEEEeEEeCCCCCCeEeeeEEEec-CCCeEEEEeeeeEe-----------
Q 009797 82 WPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVT-DEKELIMEPCLKWA----------- 149 (525)
Q Consensus 82 W~~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~P~i~~v~~~~~-~~~~~~le~~~~~~----------- 149 (525)
||.++|.+++.|.+.+|+.|+++.|+| |+++++.+||||++||||.+||.|+. ..+.+.||+++++.
T Consensus 234 W~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~t~~~ 312 (1227)
T COG5038 234 WPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTATS 312 (1227)
T ss_pred eeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhhhhHH
Confidence 999999999999999999999999999 99999999999999999999999986 66889999999996
Q ss_pred ----CCCcEEEEEEE---cc-eEEEEEEEeEEEEEEEEEEEeecCCCCCeeeEEEEEcCCCCeEEEEEEEcC-----cCc
Q 009797 150 ----ANPNVTIGVKA---FG-LKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVG-----ADL 216 (525)
Q Consensus 150 ----~~~~i~l~~~~---~~-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~g-----~~~ 216 (525)
-+++|.|.++. ++ +++||.|+|+.|.|++||+++ |++.+|+++.+.++|||.|.+||.++|+| .|+
T Consensus 313 ~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~~g~dI 391 (1227)
T COG5038 313 ARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGVDI 391 (1227)
T ss_pred HhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCCCccceeE
Confidence 25678888865 45 789999999999999999998 99999999999999999999999999987 478
Q ss_pred ccCcchHHHHHHHHHHHHhhcccCCccccccccCCCcc-CCCceeEEEEEEEeccCCcccC--cCCCCCcEEEEEEcCCc
Q 009797 217 MSIPGLYRFVQELIKTQVANMYLWPKTLEVPILDPSKA-YRRPVGILHVKVVKAMNLKKKD--LLGASDPYVKLKITEDK 293 (525)
Q Consensus 217 ~~iP~l~~~i~~~i~~~l~~~~v~P~~~~~~i~~~~~~-~~~~~g~L~V~v~~A~~L~~~d--~~g~~dpyv~v~~~~~~ 293 (525)
+.+|||.+||+++|...+++|+++|+.+++++...... ...+.|+|.|+|.+|++|...+ ..+..|||+++...+..
T Consensus 392 ~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~ 471 (1227)
T COG5038 392 FAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRV 471 (1227)
T ss_pred ecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEecccc
Confidence 99999999999999999999999999999988754443 7889999999999999999988 57899999999976544
Q ss_pred CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCeeE-EEecccccccCC
Q 009797 294 LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK-TLDLLKNMDLND 372 (525)
Q Consensus 294 ~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~-~~~l~~~~~~~~ 372 (525)
. .||++++++.||+|||+|++.+... .+.|.++|||.+...+|+.+|.+.++|..|.....+.. ...+.
T Consensus 472 ~--gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~------- 541 (1227)
T COG5038 472 I--GKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL------- 541 (1227)
T ss_pred C--CccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-------
Confidence 3 5999999999999999999999764 68999999999999999999999999999987764432 22222
Q ss_pred CCCCceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC--CCCCcEEEEEECCeEE-
Q 009797 373 GQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK--HHTNPYARILFRGEER- 449 (525)
Q Consensus 373 ~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~--~~~dPyv~v~l~~~~~- 449 (525)
.+.+..|+|+.+++|+|..++........ ..+ ....+|++.++++++++|... ....-|++++++++..
T Consensus 542 -~~~k~vGrL~yDl~ffp~~e~k~~~~~s~-----e~~--ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~ 613 (1227)
T COG5038 542 -RNTKNVGRLTYDLRFFPVIEDKKELKGSV-----EPL--EDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKEVY 613 (1227)
T ss_pred -ccCccceEEEEeeeeecccCCcccccccc-----CCc--ccCCcceeEEEeeccccccCccccccceeEEEEecceEEe
Confidence 24788999999999999877643322110 001 123579999999999999763 2233448999988765
Q ss_pred EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEcccc
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~ 509 (525)
.|+..+.+.+|.||+.++-.+.+. .+..+.+.++|... .+.+|....+|.++
T Consensus 614 st~~~k~t~~~~wn~~~~~~v~~~-~ns~~~~~~~d~~~-------g~~i~~~~~~l~~l 665 (1227)
T COG5038 614 STGKLKFTNHPSWNLQYNVLVTDR-KNSSIKVVTFDVQS-------GKVIATEGSTLPDL 665 (1227)
T ss_pred ccceeeeccCCceeeecceEeccC-cceeEEEEeccccc-------CceeccccccchHh
Confidence 568999999999999999999875 55689999988842 45666666666554
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=272.76 Aligned_cols=222 Identities=29% Similarity=0.450 Sum_probs=192.2
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEEEEE
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAVY 331 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~ 331 (525)
.++.....|+|+|++|++|+.++..|.+||||++++.+++..+.+|++.++|+||.|||+|.|.+.. .....|.+.||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 4566788999999999999999977889999999999888777899999999999999999999653 34789999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCCCCCCCcccccccccCCCC
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPE 411 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~ 411 (525)
|+|+++++++||++.++|..+........|.++....... ....|+|.++++|.|
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p--------------------- 295 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLP--------------------- 295 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeec---------------------
Confidence 9999999999999999999998887777888876543222 222389999999998
Q ss_pred CCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCC-eEEEE
Q 009797 412 NTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTND-RLHVE 482 (525)
Q Consensus 412 ~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~l~i~ 482 (525)
..|.|+|.|.+|+||... +.+||||++++.. +++||++++++.||+|||+|.|.|+.....+ ++.|+
T Consensus 296 ----~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~ 371 (421)
T KOG1028|consen 296 ----TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELT 371 (421)
T ss_pred ----CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEE
Confidence 489999999999999863 5789999999854 2459999999999999999999998654544 89999
Q ss_pred EEEcccCccCCCCCccceEEEEEccc
Q 009797 483 VCSVSSRIGLLHPKVLFQFYFIFYLV 508 (525)
Q Consensus 483 V~d~~~~~~~~~~d~~lG~v~I~l~~ 508 (525)
|||++. +++.++||++.++...
T Consensus 372 V~d~d~----~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 372 VWDHDT----LGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEccc----ccccceeeEEEecCCC
Confidence 999987 7888899999999987
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-22 Score=201.81 Aligned_cols=226 Identities=20% Similarity=0.268 Sum_probs=177.8
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (525)
..|.|+|.+|+||+..+..|.+||||.|.++.... .+|.++.+++.|.|.|+|+|.+.. .-+.|.|-|||+| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccc-cccc
Confidence 46899999999999999999999999999997664 799999999999999999999975 3578999999999 9999
Q ss_pred CccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcce
Q 009797 340 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGL 419 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 419 (525)
+.||.+.+.-.+|....+...|+.|.+ .+ .+....|+|++++.+.+.... .-
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD----~dsEVQG~v~l~l~~~e~~~~-----------------------~~ 132 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VD----PDSEVQGKVHLELALTEAIQS-----------------------SG 132 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc-cC----CChhhceeEEEEEEeccccCC-----------------------Cc
Confidence 999999999999988777777887643 22 236889999999999764221 11
Q ss_pred EEEEEEeeecCCC--CCCCCcEEEEEECCeE----EEeeeecCCCCCcccceEEEEecCC-----------C---CCCeE
Q 009797 420 LVVIVHEAQDVEG--KHHTNPYARILFRGEE----RKTKHVKKNRDPRWEEEFQFMLEEP-----------P---TNDRL 479 (525)
Q Consensus 420 L~V~v~~a~~L~~--~~~~dPyv~v~l~~~~----~kT~v~~~t~nP~wne~f~f~v~~~-----------~---~~~~l 479 (525)
+...+.+++++-+ .+.+|||+++...|.. ++|+++++|.+|.|+|.|.|.+... . ..-.|
T Consensus 133 ~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 133 LVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred chhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 2233344445433 3579999999997754 4999999999999999999998753 0 11267
Q ss_pred EEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 480 HVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 480 ~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
.+++|+.... ..++.++|.+.++++... .-.....||+
T Consensus 213 rv~lW~~~~~---~~~~~FlGevrv~v~~~~----~~s~p~~W~~ 250 (800)
T KOG2059|consen 213 RVDLWNDLNL---VINDVFLGEVRVPVDVLR----QKSSPAAWYY 250 (800)
T ss_pred EEeeccchhh---hhhhhhceeEEeehhhhh----hccCccceEE
Confidence 8888986432 456999999999999854 2334455663
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-21 Score=161.79 Aligned_cols=119 Identities=21% Similarity=0.369 Sum_probs=100.9
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCC-CCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHK-NLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 337 (525)
.|.|.|+|++|++++..+ .|++||||++.+++.+ .+|+++.+ +.||+|||+|.|.+... ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~---~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAV---YETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEE---EEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999998777 7999999999998765 48999865 79999999999999753 468999999999999
Q ss_pred CCCccEEEEEECc-ccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 338 KHDKMGMNVVPLK-ELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 338 ~d~~lG~~~i~L~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
+|++||++.+++. .+..++....|++|... ......|+|+++++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence 9999999999996 57777767888887431 123578999999987
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=156.68 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=89.8
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCCCCCCcEEEEEECC----eEEEeeeec
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRG----EERKTKHVK 455 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~----~~~kT~v~~ 455 (525)
|+|++++.|.| ..+.|.|+|++|+||+..+.+||||++++.. .+++|++++
T Consensus 1 ~~l~fsL~Y~~-------------------------~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~r 55 (118)
T cd08677 1 PKLHYSLSYDK-------------------------QKAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKK 55 (118)
T ss_pred CeEEEEEEEcC-------------------------cCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceec
Confidence 57999999987 5889999999999999777899999999964 356999999
Q ss_pred CCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEcccc
Q 009797 456 KNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 456 ~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~ 509 (525)
+|.||+|||+|.|.++..... ..|.++|||.|+ ++++++||++.+++.++
T Consensus 56 ktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr----fs~~d~IG~v~l~l~~~ 106 (118)
T cd08677 56 LALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR----FSRHSTLGELRLKLADV 106 (118)
T ss_pred CCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC----CCCCceEEEEEEccccc
Confidence 999999999999999865443 489999999997 89999999999999975
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-20 Score=156.48 Aligned_cols=121 Identities=29% Similarity=0.487 Sum_probs=105.8
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
.|+|+|++|++|+..+..|.+||||++++++.. .++|+++.++.||.|||+|.|.+.+. .+.|.|+|||++..++|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence 489999999999999988999999999997633 36999999999999999999999765 578999999999999999
Q ss_pred ccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
+||++.+++.++..+...+.|++|... .+.+..|+|++.++|.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence 999999999999988888889887421 22467999999999865
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-20 Score=158.49 Aligned_cols=118 Identities=27% Similarity=0.490 Sum_probs=99.9
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeC-----CCCCeEEEEEEecCCC
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-----PESQAVELAVYDWEQV 336 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~-----~~~~~L~i~v~d~~~~ 336 (525)
++|+|++|+||+.++..|.+||||++++++.+ ++|++++++.||+|||+|.|.+.. +....|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999998654 599999999999999999999976 3567899999999998
Q ss_pred CCCCccEEEEEECcccC--CCCCeeEEEecccccccCCCCCCceeeEEEEEE
Q 009797 337 GKHDKMGMNVVPLKELT--PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (525)
Q Consensus 337 ~~d~~lG~~~i~L~~l~--~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (525)
++|++||++.++|+++. .+.....|++|.... ....+.+|+|++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~----~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP----GKDDKERGEIEVDI 125 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCC----CCCccccceEEEEe
Confidence 89999999999999987 455567788874321 12356789999987
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=153.23 Aligned_cols=115 Identities=30% Similarity=0.510 Sum_probs=102.6
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
+++|+|++|++|+..+..|.+||||++++++.. .+|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 479999999999999988999999999997644 68999999999999999999998766789999999999988999
Q ss_pred ccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
+||++.++|.++..+.....|++|. ...|+|++.++|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~-----------~~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELE-----------DGEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEcc-----------CCCcEEEEEEEec
Confidence 9999999999999888888898872 2369999998773
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=155.12 Aligned_cols=117 Identities=30% Similarity=0.443 Sum_probs=100.0
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecC-CCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (525)
|.|+|+|++|++|+..+..+.+||||++++++.. ++|+++. ++.||.|||+|.|.+.....+.|.++|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999999988999999999998744 5788764 5799999999999998766788999999998766
Q ss_pred CCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 339 HDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 339 d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
|++||++.+++.++..+.....|+++.. +++..|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence 8999999999999877656667777632 24689999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=156.43 Aligned_cols=122 Identities=30% Similarity=0.492 Sum_probs=103.5
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEec
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 333 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 333 (525)
......|.|+|+|++|++|+..+..|.+||||+++++... .+|++++++.||.|||+|.|.+.++..+.|.++|||+
T Consensus 9 ~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~ 85 (136)
T cd08375 9 QRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDR 85 (136)
T ss_pred cCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEEC
Confidence 3456789999999999999999988999999999997654 6999999999999999999999877678899999999
Q ss_pred CCCCCCCccEEEEEECcccCCCC-----CeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEE-----PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
+..++|++||++.+++.++.... ....++.+ ....+|+|++++++
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence 99999999999999999998622 11223322 25778999999986
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=152.76 Aligned_cols=116 Identities=31% Similarity=0.509 Sum_probs=101.2
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCc
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (525)
|+|+|++|++|+..+..+.+||||++++++.....++|++++++.||+|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998888999999999975433457999999999999999999999766567899999999988 8999
Q ss_pred cEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 342 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 342 lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
||++.++++++..+.....|+++. .+.+|+|++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~----------~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLN----------PQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECC----------CCCCceEEEEEEe
Confidence 999999999999888888888873 2458888888765
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=151.83 Aligned_cols=107 Identities=26% Similarity=0.410 Sum_probs=91.7
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcC----CcCCceeeeecCCCCCCeEeeEEEEEeeCC---CCCeEEEEEEec
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITE----DKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAVYDW 333 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~----~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~ 333 (525)
.|+|+|++|++|+..+ .|.+||||+|++.+ .+.++++|+++++|+||+|||+|.|.+... ....|.+.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999888 49999999999843 333346899999999999999999999743 346799999999
Q ss_pred CCCCCCCccEEEEEECcccCCCCCeeEEEeccccc
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNM 368 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~ 368 (525)
+..+++++||++.+|++++..++....|++|.+.+
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~ 114 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRI 114 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcc
Confidence 98888999999999999999988888899885543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-20 Score=152.12 Aligned_cols=106 Identities=18% Similarity=0.328 Sum_probs=88.9
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcC-CcCCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE-DKLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAVY 331 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~-~~~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v~ 331 (525)
+....|.|+|+|++|++|+ . .|.+||||++++.. .+..+++|+++++|+||+|||+|.|.+.. .....|.++||
T Consensus 9 Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 9 YDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred EcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 4556899999999999998 3 46799999999974 34456799999999999999999999874 33678999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEe
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 363 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 363 (525)
|+|+++++++||++.++++++..+...++|.+
T Consensus 86 d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 86 CCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred eCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 99999999999999999998865555555543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-19 Score=151.24 Aligned_cols=116 Identities=28% Similarity=0.412 Sum_probs=98.1
Q ss_pred EEEEEEEeccC---CcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCC-
Q 009797 261 ILHVKVVKAMN---LKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV- 336 (525)
Q Consensus 261 ~L~V~v~~A~~---L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~- 336 (525)
.|+|+|++|++ |+.+|..|.+||||++++++++ .+|+++++++||+|||+|.|.+.++ ...|.++|||++..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~---~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKW---VRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEE---eEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcc
Confidence 38999999999 8889999999999999998765 4899999999999999999999775 45899999999886
Q ss_pred -----CCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEE
Q 009797 337 -----GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVV 384 (525)
Q Consensus 337 -----~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l 384 (525)
++|++||++.++++.+..+.....|++|... + +...+..|+|+.
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~---~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-N---PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-C---CCCccCCcEEEe
Confidence 3899999999999999988877888887431 1 123566777764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-19 Score=155.26 Aligned_cols=100 Identities=46% Similarity=0.736 Sum_probs=92.2
Q ss_pred CceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCC
Q 009797 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 336 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 336 (525)
...|.|+|+|.+|.+|..+|..+++||||++.+++++. +|+++++++||+|||.|.|.+.++ ...|+++|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 46899999999999999999889999999999999884 899999999999999999999987 67899999999999
Q ss_pred CCCCccEEEEEECcccCCCCCeeE
Q 009797 337 GKHDKMGMNVVPLKELTPEEPSVK 360 (525)
Q Consensus 337 ~~d~~lG~~~i~L~~l~~~~~~~~ 360 (525)
+.||+||.++|++..+.......+
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CcccccceeeeccHHHHHHhhhhc
Confidence 999999999999999987654443
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-18 Score=181.44 Aligned_cols=287 Identities=22% Similarity=0.357 Sum_probs=208.1
Q ss_pred CcchHHHHHHHHHHHHhhcccCCcc-------ccc---cccC----CCc-cCCCceeEEEEEEEeccCCcccCcCCCCCc
Q 009797 219 IPGLYRFVQELIKTQVANMYLWPKT-------LEV---PILD----PSK-AYRRPVGILHVKVVKAMNLKKKDLLGASDP 283 (525)
Q Consensus 219 iP~l~~~i~~~i~~~l~~~~v~P~~-------~~~---~i~~----~~~-~~~~~~g~L~V~v~~A~~L~~~d~~g~~dp 283 (525)
++...+=+.+.|.......++.|.+ ++. |+.. .+. ....++|.++|.|..|.+|......+++||
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP 734 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP 734 (1227)
T ss_pred eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence 4444455567777777777777766 222 4432 111 367899999999999999998777899999
Q ss_pred EEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCe---eE
Q 009797 284 YVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS---VK 360 (525)
Q Consensus 284 yv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~---~~ 360 (525)
|+++.+.+.. +++|-....++||.|||..+..+..+ .+.+.++++|++..+.|..+|++.++.+++...... ..
T Consensus 735 ya~v~~n~~~--k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 735 YATVLVNNLV--KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred ceEEEeccee--EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence 9999998744 47888889999999999999999875 677999999999999999999999999998763221 11
Q ss_pred EEecccccccCCCCCCceeeEEEEEEEEEecCCCC------------------------CCC------------------
Q 009797 361 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEED------------------------LPK------------------ 398 (525)
Q Consensus 361 ~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~------------------------~~~------------------ 398 (525)
...-......-...+...+|++.+.+.|+|..-.- ..+
T Consensus 812 ~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v 891 (1227)
T COG5038 812 TIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEV 891 (1227)
T ss_pred eecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceee
Confidence 11111001100111356789999999998743210 000
Q ss_pred ----c-------------cc---------------------------c--------cc----c-------------cc--
Q 009797 399 ----S-------------FE---------------------------E--------SQ----T-------------VQ-- 407 (525)
Q Consensus 399 ----~-------------~~---------------------------~--------~~----~-------------~~-- 407 (525)
+ .+ + .. . ++
T Consensus 892 ~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s 971 (1227)
T COG5038 892 EELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYS 971 (1227)
T ss_pred ccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccc
Confidence 0 00 0 00 0 00
Q ss_pred -------C----C----------------------------------------CC--C-----CCCCcceEEEEEEeeec
Q 009797 408 -------K----A----------------------------------------PE--N-----TPAGGGLLVVIVHEAQD 429 (525)
Q Consensus 408 -------~----~----------------------------------------~~--~-----~~~~~g~L~V~v~~a~~ 429 (525)
. + |. . .-..+|.|.+.+.+|.|
T Consensus 972 ~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~n 1051 (1227)
T COG5038 972 ETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGEN 1051 (1227)
T ss_pred eEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCC
Confidence 0 0 00 0 01146788999999999
Q ss_pred CCCC---CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEE
Q 009797 430 VEGK---HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIF 505 (525)
Q Consensus 430 L~~~---~~~dPyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~ 505 (525)
|+.. +.+||||++.++++ .++|+++++|+||+|||.|+..|... ..+.+.+.|+|++. -.+++.||.+.|+
T Consensus 1052 l~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~----~~knd~lg~~~id 1126 (1227)
T COG5038 1052 LPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDS----GEKNDLLGTAEID 1126 (1227)
T ss_pred CcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeeccc----CCCcccccccccc
Confidence 9874 46999999999998 57999999999999999999999875 56899999999987 4689999999999
Q ss_pred ccccccch
Q 009797 506 YLVHRFKQ 513 (525)
Q Consensus 506 l~~~~~~~ 513 (525)
|..+..+.
T Consensus 1127 L~~l~~~~ 1134 (1227)
T COG5038 1127 LSKLEPGG 1134 (1227)
T ss_pred HhhcCcCC
Confidence 99986664
|
|
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=149.95 Aligned_cols=122 Identities=26% Similarity=0.472 Sum_probs=103.9
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 389999999999999988899999999997654 58999999999999999999998766678999999999999999
Q ss_pred ccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEE
Q 009797 341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (525)
+||++.+++.++........|+.+.+.... ....++..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRA-EEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCC-CccccCceEEEEEEe
Confidence 999999999999877666778877654322 233577899999876
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-19 Score=154.53 Aligned_cols=128 Identities=22% Similarity=0.326 Sum_probs=104.7
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCC-CCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHK-NLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (525)
.|+|+|++|++|+.++..|.+||||+++++++. .+|+++.+ +.||+|||+|.|.+.++..+.+.++|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 489999999999999999999999999999744 58888866 69999999999999876667899999999988899
Q ss_pred CccEEEEEECcccCCC----CCeeEEEeccccccc-CCCCCCceeeEEEEEEEEEec
Q 009797 340 DKMGMNVVPLKELTPE----EPSVKTLDLLKNMDL-NDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~----~~~~~~~~l~~~~~~-~~~~~~~~~G~l~l~l~~~p~ 391 (525)
++||++.++|+++..+ .....|++|...... ++.+..+.+|+|++++.|.+.
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 9999999999999753 234678887543211 012335678999999999753
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=152.46 Aligned_cols=111 Identities=27% Similarity=0.448 Sum_probs=95.2
Q ss_pred ceeEEEEEEEeccCCcccC-cCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEE-ec
Q 009797 258 PVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY-DW 333 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~-d~ 333 (525)
..|.|.|+|++|+||+..+ ..|.+||||++++.+.+ ..++||+++++++||+|||+|.|.+. .....|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 3689999999999999864 56889999999996543 34679999999999999999999997 56789999999 67
Q ss_pred CCCCCCCccEEEEEECcccCCCCCeeEEEecccccc
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMD 369 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~ 369 (525)
+..+++++||++.++|+++..+.....|+.|.+...
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 888899999999999999987777778888865443
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=150.74 Aligned_cols=121 Identities=33% Similarity=0.489 Sum_probs=100.7
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC---CCeEEEEEEecCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE---SQAVELAVYDWEQVG 337 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~---~~~L~i~v~d~~~~~ 337 (525)
.|+|+|++|++|+..+..|.+||||+++++++. ++|++++++.||.|||+|.|.+.++. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 389999999999999988999999999998755 58999999999999999999997543 367999999998876
Q ss_pred -CCCccEEEEEECcccC-CCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 338 -KHDKMGMNVVPLKELT-PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 338 -~d~~lG~~~i~L~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
++++||++.++++++. .+.....|++|.+.. ..++.+|+|++++.+.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence 8999999999999998 445566777774321 1245799999998763
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=149.40 Aligned_cols=122 Identities=31% Similarity=0.497 Sum_probs=100.8
Q ss_pred eeEEEEEEEeccCCcccC-cCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCC
Q 009797 259 VGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 337 (525)
.|.|+|+|++|++|+..+ ..+.+||||++++++. ...++|++++++.||.|||+|.|.+. ...+.|.++|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999765 3467999999999873 23479999999999999999999987 44789999999999988
Q ss_pred CCCccEEEEEECcccCCCCCee-EEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 338 KHDKMGMNVVPLKELTPEEPSV-KTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 338 ~d~~lG~~~i~L~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
+|++||++.+++.++....... .+..+. .+++.+|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEEeCC
Confidence 9999999999999999775543 222221 13567899999999986
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=150.29 Aligned_cols=123 Identities=29% Similarity=0.476 Sum_probs=102.8
Q ss_pred eEEEEEEEeccCCcccCc--CCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCC
Q 009797 260 GILHVKVVKAMNLKKKDL--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 337 (525)
|+|+|+|++|++|+..+. .+.+||||++.+++.. .+|++++++.||.|||+|.|.+.....+.|.++|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 7899999999997544 69999999999999999999998756789999999999888
Q ss_pred CCCccEEEEEECcccCC---CCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 338 KHDKMGMNVVPLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 338 ~d~~lG~~~i~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
++++||++.+++.++.. ......|+.|.... ...+...+|+|+++++|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTR---PGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCcc---cCccccccceEEEEEEC
Confidence 99999999999999973 23345677664321 11335689999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=147.08 Aligned_cols=119 Identities=17% Similarity=0.283 Sum_probs=100.1
Q ss_pred EEEEEEeccCCcccC-cCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 262 LHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 262 L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
|.|+|++|+||+..+ ..|.+||||++++++.. .++|+++++|.||.|||+|.|.+.+. ...|.+.|||++..++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 689999999999874 45789999999997543 36899999999999999999999753 578999999999999999
Q ss_pred ccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
+||++.++++++..+.....|+++.+.- ...+.+|+|++++.|
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD-----ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC-----CCCcccEEEEEEEEC
Confidence 9999999999999877778888875421 123468999998864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.5e-19 Score=149.75 Aligned_cols=105 Identities=30% Similarity=0.414 Sum_probs=91.4
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEe-e--CCCCCeEEEEEEec
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTV-R--DPESQAVELAVYDW 333 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v-~--~~~~~~L~i~v~d~ 333 (525)
.+.|.|+|++|+||+..+ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 688999999999999999 8999999999997543 3457999999999999999999987 2 33467899999999
Q ss_pred CCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
+..+++++||++.++|+++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999977666677654
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-18 Score=147.54 Aligned_cols=122 Identities=25% Similarity=0.465 Sum_probs=102.5
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCc
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (525)
|.|+|++|+||+. ..|.+||||+++++... ..++|++++++.||+|||+|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPP-QKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCC-cEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 6799999999987 66899999999997422 34699999999999999999999854 46789999999999889999
Q ss_pred cEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 342 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 342 lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
||++.++++++..+.....|+++.... ..+....|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~----~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRP----YEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCC----CCCCCcceEEEEEEEEecc
Confidence 999999999999877777787764321 1235679999999999864
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=146.45 Aligned_cols=122 Identities=22% Similarity=0.341 Sum_probs=101.1
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (525)
...|+|+|++|+||+.. +.+||||++++++.. ..+|+++ ++.||.|||+|.|.+.......+.+.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 45799999999999874 478999999997643 2578875 58999999999998765544689999999999999
Q ss_pred CCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 339 HDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 339 d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
|++||++.++|.++..+.....|+++.+.. ..+.+..|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEc
Confidence 999999999999999887778888875431 123567899999999986
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-18 Score=151.35 Aligned_cols=109 Identities=17% Similarity=0.285 Sum_probs=91.4
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC-----CCCCcEEEEEECCe-----E
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK-----HHTNPYARILFRGE-----E 448 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~-----~~~dPyv~v~l~~~-----~ 448 (525)
.|+|.+++.|.| ..+.|.|.|++|+||+.. +.+||||++++..+ +
T Consensus 1 ~Gel~~sL~Y~~-------------------------~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~k 55 (138)
T cd08407 1 TGEVLLSISYLP-------------------------AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKK 55 (138)
T ss_pred CCEEEEEEEEeC-------------------------CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccce
Confidence 499999999998 478899999999999864 34899999998652 4
Q ss_pred EEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhh
Q 009797 449 RKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECC 516 (525)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~ 516 (525)
+||++++++.||+|||.|.|.++..... ..|.|+|||++. ++++++||++.+++.....+.++|
T Consensus 56 kkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~----~~~~d~iG~v~lg~~~~g~~~~hW 120 (138)
T cd08407 56 KQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDS----PGQSLPLGRCSLGLHTSGTERQHW 120 (138)
T ss_pred eccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCC----CcCcceeceEEecCcCCCcHHHHH
Confidence 5899999999999999999999865443 489999999986 788999999999998744444444
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=147.00 Aligned_cols=115 Identities=30% Similarity=0.503 Sum_probs=99.9
Q ss_pred eEEEEEEEeccCCcccCc------CCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEec
Q 009797 260 GILHVKVVKAMNLKKKDL------LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 333 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~------~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 333 (525)
|+|+|+|++|++|+..+. .|.+||||++++++. .++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998874 368999999999863 36999999999999999999999876678999999999
Q ss_pred CCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
+.. ++++||++.+++.++..+.....|+++. ....|+|++++.|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------~~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE----------DVKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECc----------CCCCceEEEEEeC
Confidence 987 8999999999999998876677888873 2367999998764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.7e-18 Score=145.35 Aligned_cols=123 Identities=21% Similarity=0.346 Sum_probs=101.4
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCC
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 337 (525)
|.++|+|+|++|++|+..+..|.+||||++.++++. .+|++++++.||+|||.|.|.+.+. ...|.++|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999998765 5999999999999999999988764 67899999999876
Q ss_pred CCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 338 KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 338 ~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
+|++||++.+++.++......+ +++.+.. ...+++..|+|.+++.+.+
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~~~--~~l~~~~---~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTLRT--LPLRKRG---RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCCcCceE--EEcccCC---CCCCCCCCCEEEEEEEEcc
Confidence 5899999999999876544444 4443221 1235788999999998765
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-18 Score=147.86 Aligned_cols=110 Identities=30% Similarity=0.437 Sum_probs=93.8
Q ss_pred CCCceeEEEEEEEeccCCcccCcC-CCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~ 329 (525)
+....+.|.|+|++|+||+.++.. |.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.++
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 344568999999999999999875 899999999996543 334699999999999999999999863 235689999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|||++..+++++||++.++|.++...+....|++|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999999999999999999877666677764
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.7e-18 Score=150.30 Aligned_cols=124 Identities=27% Similarity=0.453 Sum_probs=103.0
Q ss_pred ceeEEEEEEEeccCCcccC------------------------------cCCCCCcEEEEEEcCCcCCceeeeecCCCCC
Q 009797 258 PVGILHVKVVKAMNLKKKD------------------------------LLGASDPYVKLKITEDKLPSKKTTVKHKNLN 307 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~n 307 (525)
-.|+|.|+|++|++|+++| ..|.+||||++++++... .+|++++++.|
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~n 82 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSEN 82 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCC
Confidence 3699999999999999987 246789999999987543 68999999999
Q ss_pred CeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEE
Q 009797 308 PEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 387 (525)
Q Consensus 308 P~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (525)
|+|||+|.|.+... .+.|.|+|||++..+ +++||++.++++++..+.....|+++... ..+..+..|.|+++++
T Consensus 83 P~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~----~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 83 PVWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS----NGKPPKPGAKIRVSLQ 156 (158)
T ss_pred CccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC----CCCCCCCCCEEEEEEE
Confidence 99999999998654 468999999999775 68999999999999988777888887542 1122455789999998
Q ss_pred EE
Q 009797 388 YK 389 (525)
Q Consensus 388 ~~ 389 (525)
|.
T Consensus 157 f~ 158 (158)
T cd04015 157 FT 158 (158)
T ss_pred EC
Confidence 83
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-18 Score=146.37 Aligned_cols=112 Identities=16% Similarity=0.276 Sum_probs=93.5
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECC-----eEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER 449 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~-----~~~ 449 (525)
+|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~y~~-------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~ 55 (125)
T cd04029 1 SGEILFSLSYDY-------------------------KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKR 55 (125)
T ss_pred CcEEEEEEEEEC-------------------------CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccce
Confidence 599999999976 478899999999999752 5799999999952 356
Q ss_pred EeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
||++++++.||+|||+|.|.+..... +..|.|+|||++. ++++++||++.|+|.++...+ ....||
T Consensus 56 kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~----~~~~~~lG~~~i~l~~~~~~~----~~~~w~ 122 (125)
T cd04029 56 KTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR----FGRNTFLGEVEIPLDSWNFDS----QHEECL 122 (125)
T ss_pred EeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCcEEEEEEEeCCcccccC----CcccEE
Confidence 99999999999999999999976433 3489999999975 778999999999999986553 355555
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-18 Score=146.60 Aligned_cols=116 Identities=16% Similarity=0.272 Sum_probs=95.3
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECC-----eEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER 449 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~-----~~~ 449 (525)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~Y~~-------------------------~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~ 55 (128)
T cd08392 1 TGEIEFALHYNF-------------------------RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKR 55 (128)
T ss_pred CcEEEEEEEEeC-------------------------CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCccccee
Confidence 489999999986 467999999999999763 5789999999963 356
Q ss_pred EeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
||++++++.||+|||+|.|.+...... ..|.+.|||.+. ++++++||++.|+|.++... +.-.....||.
T Consensus 56 kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~----~~~~~~lG~~~i~L~~~~~~-~~~~~~~~W~~ 126 (128)
T cd08392 56 KTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT----LKRRVFLGEVLIPLADWDFE-DTDSQRFLWYP 126 (128)
T ss_pred ecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC----CcCcceEEEEEEEcCCcccC-CCCccccceEE
Confidence 999999999999999999998764333 499999999975 67899999999999997322 22346677874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-18 Score=146.17 Aligned_cols=110 Identities=27% Similarity=0.479 Sum_probs=94.6
Q ss_pred CCCceeEEEEEEEeccCCcccCc-CCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDL-LGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~ 329 (525)
+....|.|.|+|++|+||+..+. .|.+||||++++.+.. ...+||++++++.||+|||+|.|.+... ....|.|+
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 45568999999999999998875 4789999999996543 3457999999999999999999998642 35689999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|||++..+++++||++.++|.++........|++|
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999999999999999888777778765
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.76 E-value=9e-18 Score=143.22 Aligned_cols=115 Identities=26% Similarity=0.430 Sum_probs=96.0
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
.|+|+|++|+||+.. .+||||++++++.. .+|++++++.||+|||+|.|.+..+....|.++|||++.. +++
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 389999999999877 68999999998643 6999999999999999999998776678999999999976 789
Q ss_pred ccEEEEEECcccCCCC-----CeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 341 KMGMNVVPLKELTPEE-----PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
+||++.++++++.... ....|++|... .+.+.+|+|++++.|-
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~------~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDK------KGGRVGGELMLAVWFG 120 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCC------CCCccceEEEEEEEec
Confidence 9999999999987542 23467776432 1256889999999873
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-18 Score=149.09 Aligned_cols=108 Identities=16% Similarity=0.242 Sum_probs=89.9
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECCe-----EEEe
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-----ERKT 451 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~-----~~kT 451 (525)
|+|.++++|.| ..+.|.|+|++|+||+.. +.+||||++++.+. ++||
T Consensus 2 G~i~~sL~Y~~-------------------------~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT 56 (136)
T cd08406 2 GEILLSLSYLP-------------------------TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKT 56 (136)
T ss_pred cEEEEEEEEcC-------------------------CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCC
Confidence 89999999987 366899999999999863 57899999999532 4589
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhh
Q 009797 452 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECC 516 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~ 516 (525)
++++++.||+|||+|.|.++..... ..|.|+|+|++. ++++++||++.|+......+.++|
T Consensus 57 ~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~----~~~~~~iG~v~lg~~~~g~~~~hW 118 (136)
T cd08406 57 SVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE----DGKTPNVGHVIIGPAASGMGLSHW 118 (136)
T ss_pred ccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC----CCCCCeeEEEEECCCCCChhHHHH
Confidence 9999999999999999999764333 489999999985 778999999999988754444443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.6e-18 Score=146.04 Aligned_cols=112 Identities=20% Similarity=0.263 Sum_probs=93.5
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECC-----eEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER 449 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~-----~~~ 449 (525)
+|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~y~~-------------------------~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~ 55 (125)
T cd08393 1 QGSVQFALDYDP-------------------------KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKR 55 (125)
T ss_pred CcEEEEEEEEEC-------------------------CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccc
Confidence 599999999976 467899999999999863 4789999999953 346
Q ss_pred EeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
||++++++.||+|||.|.|.+...... ..|.++|||++. ++++++||++.|+|.++... +....||
T Consensus 56 kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~----~~~~~~iG~~~i~L~~~~~~----~~~~~W~ 122 (125)
T cd08393 56 KTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS----LGRNSFLGEVEVDLGSWDWS----NTQPTWY 122 (125)
T ss_pred cCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC----CCCCcEeEEEEEecCccccC----CCCcceE
Confidence 999999999999999999998754333 489999999975 78899999999999997433 3456676
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=145.39 Aligned_cols=122 Identities=36% Similarity=0.631 Sum_probs=100.3
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc----CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 336 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 336 (525)
.|+|+|++|++|+..+..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+... ...|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 489999999999999988999999999997641 2246899999999999999999998653 56899999999999
Q ss_pred CCCCccEEEEEECcccCCCCC------eeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 337 GKHDKMGMNVVPLKELTPEEP------SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 337 ~~d~~lG~~~i~L~~l~~~~~------~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
+++++||++.+++.++..... ...|++|.+. ...++..|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEee
Confidence 999999999999999986542 2355555321 1135679999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=142.08 Aligned_cols=118 Identities=31% Similarity=0.546 Sum_probs=99.5
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (525)
|.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. .+.+.++|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999998654 5899999999999999999998653 57899999999988899
Q ss_pred CccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 340 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
++||++.+++.++..+.. .|+.+... ....+..|+|.+++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~~--~~~~l~~~-----~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGER--KWYALKDK-----KLRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCCc--eEEECccc-----CCCCceeeEEEEEEEe
Confidence 999999999999976654 45554321 1124679999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-18 Score=145.70 Aligned_cols=110 Identities=31% Similarity=0.621 Sum_probs=95.9
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEe
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 332 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d 332 (525)
+....|.|.|+|++|++|+.++..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.++|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 11 YDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred ECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 4456799999999999999999889999999999965434457999999999999999999998643 35689999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
++..+++++||++.++++++..+.....|+++
T Consensus 91 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 91 FDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred CCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 99999999999999999999877777778775
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-18 Score=142.65 Aligned_cols=96 Identities=30% Similarity=0.512 Sum_probs=85.1
Q ss_pred eEEEEEEEeccCCcccCcC-CCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC---CCCeEEEEEEecCC
Q 009797 260 GILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAVYDWEQ 335 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~~~ 335 (525)
|+|+|+|++|++|+..+.. |.+||||++++.+......+|+++++++||+|||+|.|.+... ..+.|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999965444457999999999999999999988653 35689999999999
Q ss_pred CCCCCccEEEEEECcccCCC
Q 009797 336 VGKHDKMGMNVVPLKELTPE 355 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~ 355 (525)
.++|++||++.+++.++...
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC
Confidence 99999999999999999843
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.1e-18 Score=144.46 Aligned_cols=111 Identities=24% Similarity=0.307 Sum_probs=91.7
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCC--CCCCCcEEEEEECC-----eEEEe
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG--KHHTNPYARILFRG-----EERKT 451 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~--~~~~dPyv~v~l~~-----~~~kT 451 (525)
.|+|.+++.|. .+.|.|.|++|+||+. .+.+||||++++.+ .++||
T Consensus 1 ~G~l~~~l~y~---------------------------~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT 53 (122)
T cd08381 1 GGQVKLSISYK---------------------------NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKT 53 (122)
T ss_pred CCeEEEEEEEe---------------------------CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeC
Confidence 38999999985 4679999999999987 35799999999963 35799
Q ss_pred eeecCCCCCcccceEEEEe-cCCC-CCCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 452 KHVKKNRDPRWEEEFQFML-EEPP-TNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v-~~~~-~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
++++++.||+|||+|+|.+ +... ....|.|+|||++. ++++++||++.++|.++... +....||.
T Consensus 54 ~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~----~~~~~~lG~~~i~l~~l~~~----~~~~~W~~ 120 (122)
T cd08381 54 KVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS----LVENEFLGGVCIPLKKLDLS----QETEKWYP 120 (122)
T ss_pred CccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC----CcCCcEEEEEEEeccccccC----CCccceEE
Confidence 9999999999999999997 3221 23589999999986 67899999999999998633 34577874
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=145.49 Aligned_cols=111 Identities=23% Similarity=0.320 Sum_probs=91.6
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECCe----
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRGE---- 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~~---- 447 (525)
....|+|.+++.|. .|.|.|+|++|+||+.. +.+||||++++...
T Consensus 14 ~~~~G~l~lsl~y~---------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~ 66 (146)
T cd04028 14 SPSMGDIQLGLYDK---------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCI 66 (146)
T ss_pred CCCcceEEEEEEeC---------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccc
Confidence 45689999999882 46899999999999753 46899999999542
Q ss_pred -EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEE-cccCccCCCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 448 -ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS-VSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 448 -~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d-~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
++||+++++|.||+|||+|+|.+. . .+..|.|+||+ .+. ++++++||.+.|+|+++..++ ....||
T Consensus 67 ~k~KT~v~kktlnPvfNE~F~f~v~-l-~~~~L~v~V~~d~~~----~~~~~~iG~~~i~L~~l~~~~----~~~~Wy 134 (146)
T cd04028 67 AKKKTKIARKTLDPLYQQQLVFDVS-P-TGKTLQVIVWGDYGR----MDKKVFMGVAQILLDDLDLSN----LVIGWY 134 (146)
T ss_pred cceeceecCCCCCCccCCeEEEEEc-C-CCCEEEEEEEeCCCC----CCCCceEEEEEEEcccccCCC----CceeEE
Confidence 569999999999999999999998 2 55699999995 443 678999999999999985443 345666
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=142.44 Aligned_cols=112 Identities=20% Similarity=0.292 Sum_probs=93.2
Q ss_pred EEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCC---CCCCCcEEEEEECC------eEEEe
Q 009797 381 QLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG------EERKT 451 (525)
Q Consensus 381 ~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~l~~------~~~kT 451 (525)
+|.+++.|.| ..+.|.|+|++|+||+. .+.+||||++++.. .++||
T Consensus 2 ~i~~sL~Y~~-------------------------~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT 56 (124)
T cd08680 2 QVQIGLRYDS-------------------------GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRT 56 (124)
T ss_pred eEEEEEEECC-------------------------CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEc
Confidence 5888999976 57889999999999986 35789999999852 35699
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 452 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
++++++.||+|||+|+|.+...... ..|.+.|||.+. ++++++||.+.|+|.++....+ ....||.
T Consensus 57 ~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~~~~~~~---~~~~Wy~ 123 (124)
T cd08680 57 KALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP----DQQEECLGGAQISLADFESSEE---MSTKWYN 123 (124)
T ss_pred CccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC----CCceeEEEEEEEEhhhccCCCc---ccccccc
Confidence 9999999999999999998765443 499999999975 6789999999999999844432 3677875
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=144.00 Aligned_cols=110 Identities=34% Similarity=0.516 Sum_probs=95.5
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEe
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 332 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d 332 (525)
+....+.|+|+|++|+||+..+..|.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 3456789999999999999999889999999999976554467999999999999999999998642 35689999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
++..+++++||++.++++++..+.....|+++
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 99999999999999999999877777777765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=141.86 Aligned_cols=118 Identities=33% Similarity=0.461 Sum_probs=99.5
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
.|+|+|++|++|+..+..+.+||||++.+.+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998755334479999999999999999999998755678999999999888999
Q ss_pred ccEEEEEECcccCC---CCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 341 KMGMNVVPLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 341 ~lG~~~i~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
+||++.++|.++.. +.....|+++. ..|++++.+.+..
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEee
Confidence 99999999987643 23556777762 3689999988864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=143.10 Aligned_cols=116 Identities=28% Similarity=0.490 Sum_probs=100.2
Q ss_pred eeEEEEEEEeccCCcccCcC----------CCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEE
Q 009797 259 VGILHVKVVKAMNLKKKDLL----------GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVEL 328 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i 328 (525)
.|.|+|+|++|++|+..+.. |.+||||++++++... .+|++++++.||.|||+|.|.+. ....|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 58999999999999988752 6799999999986543 58999999999999999999996 3578999
Q ss_pred EEEecCCCCCCCccEEEEEECcccCC--CCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 329 AVYDWEQVGKHDKMGMNVVPLKELTP--EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~L~~l~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
.|||++..+++++||++.++|.++.. +.....|++| ...|+|++++.|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L------------~~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDL------------EPQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEc------------cCCcEEEEEEEEec
Confidence 99999988899999999999999987 4566788876 24699999999875
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=146.01 Aligned_cols=124 Identities=23% Similarity=0.369 Sum_probs=95.3
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEee---------------CCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVR---------------DPES 323 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~---------------~~~~ 323 (525)
.|+|+|++|+||+. ..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 46899999999997642 23468999999999999999999995 1123
Q ss_pred CeEEEEEEecCCCCCCCccEEEEEECcccCCC-CCeeEEEecccccccCC-----CCCCceeeEEEEEE
Q 009797 324 QAVELAVYDWEQVGKHDKMGMNVVPLKELTPE-EPSVKTLDLLKNMDLND-----GQNEKSRGQLVVEF 386 (525)
Q Consensus 324 ~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~l~~~~~~~~-----~~~~~~~G~l~l~l 386 (525)
..|.++|||++..++|++||++.+++.++..+ .....|++|.+..+..+ ..+....|.|++.+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 57999999999888999999999999999986 45667887754433221 11233456666543
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=143.71 Aligned_cols=110 Identities=26% Similarity=0.433 Sum_probs=91.5
Q ss_pred CCCceeEEEEEEEeccCCcccCcC-CCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEE-ee--CCCCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT-VR--DPESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~-v~--~~~~~~L~i~v 330 (525)
+....+.|+|+|++|+||+..+.. |.+||||++++.+....+.||++++++.||+|||+|.|. +. +.....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 445678999999999999998876 899999999997655555799999999999999999993 43 22345799999
Q ss_pred EecCCCCCCCccEEEEEECcccCCC--CCeeEEEec
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPE--EPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~l 364 (525)
||++..++|++||++.++|+++... +....|+++
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 9999999999999999999999765 345566665
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=141.58 Aligned_cols=101 Identities=21% Similarity=0.196 Sum_probs=83.4
Q ss_pred cceEEEEEEeeecCCCC--CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccC
Q 009797 417 GGLLVVIVHEAQDVEGK--HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSR 489 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~--~~~dPyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~ 489 (525)
.+.|.|+|++|+||+.. +.+||||++++.. .++||++++++.||+|||+|.|.+........|.|+|||++..
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 57899999999999864 5789999999964 2559999999999999999999997654456899999999752
Q ss_pred ccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 490 IGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 490 ~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
..++++||.+.|++.++..+ ...+.||+
T Consensus 91 ---~~~~~~lG~~~i~l~~~~~~----~~~~~Wy~ 118 (119)
T cd08685 91 ---SRDSGLLGCMSFGVKSIVNQ----KEISGWYY 118 (119)
T ss_pred ---cCCCEEEEEEEecHHHhccC----ccccceEe
Confidence 23579999999999998533 44588885
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=142.59 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=89.2
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc---CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~ 329 (525)
+....+.|.|+|++|+||+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~ 88 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD 88 (124)
T ss_pred ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence 455678999999999999998888899999999997655 2467999999999999999999998643 46799999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCC
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
|||++..+++++||++.++|+++....
T Consensus 89 V~~~~~~~~~~~lG~~~i~L~~~~~~~ 115 (124)
T cd08680 89 VCSVGPDQQEECLGGAQISLADFESSE 115 (124)
T ss_pred EEeCCCCCceeEEEEEEEEhhhccCCC
Confidence 999999999999999999999996553
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=138.75 Aligned_cols=94 Identities=20% Similarity=0.344 Sum_probs=82.0
Q ss_pred eEEEEEEEeccCCcccCcC----CCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC-CCeEEEEEEecC
Q 009797 260 GILHVKVVKAMNLKKKDLL----GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 334 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~----g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~ 334 (525)
|+|.|+|++|++|+..+.. +.+||||++++++.. +||++++++.||+|||+|.|.+.+.. ...|.++|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987642 358999999997543 58999999999999999999987543 457999999999
Q ss_pred CCCCCCccEEEEEECcccCCCC
Q 009797 335 QVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 335 ~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999998664
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=141.63 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=87.9
Q ss_pred EEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEee
Q 009797 381 QLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTK 452 (525)
Q Consensus 381 ~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~kT~ 452 (525)
+|.++++|.| ..|+|+|+|++|+||+.. +.+||||++++.+ .++||+
T Consensus 2 el~~sL~Y~p-------------------------~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~ 56 (135)
T cd08692 2 ELQLGTCFQA-------------------------VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTR 56 (135)
T ss_pred eEEEEeeecC-------------------------cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCc
Confidence 6899999998 488999999999999874 4569999999853 356999
Q ss_pred eecCCC-CCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEccccc-cchhhhc
Q 009797 453 HVKKNR-DPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHR-FKQECCR 517 (525)
Q Consensus 453 v~~~t~-nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~-~~~~~~~ 517 (525)
++++|. ||+|||+|.|.++....+-.+.|+|+|++. .+++++||++.++.++.. .+.++|.
T Consensus 57 v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~----~~~n~~IG~v~lG~~~~~~~~~~hW~ 119 (135)
T cd08692 57 LVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS----VRRKHFLGQVWISSDSSSSEAVEQWK 119 (135)
T ss_pred cEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC----CcCCceEEEEEECCccCCchhhhhHH
Confidence 999995 699999999999875333389999999975 678999999999998742 2344443
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-17 Score=138.97 Aligned_cols=118 Identities=25% Similarity=0.440 Sum_probs=98.2
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCc
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (525)
|.|+|++|++|+.++..|.+||||++.+++.. ..+|++++++.||.|||+|.|.+.. ..+.|.++|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV--IIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEe--eeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999997643 3699999999999999999999864 35789999999999999999
Q ss_pred cEEEEEECcccCCCC-CeeEEEecccccccCCCCCCceeeEEEEEEE
Q 009797 342 MGMNVVPLKELTPEE-PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 387 (525)
Q Consensus 342 lG~~~i~L~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (525)
||++.+++.++.... ....|++|.+. .......|+|++.++
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-----~~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV-----DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee-----CCCCccccEEEEEEE
Confidence 999999999887542 35677776431 122457899998864
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=137.07 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=81.2
Q ss_pred ceEEEEEEeeecCCCC-------CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc
Q 009797 418 GLLVVIVHEAQDVEGK-------HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI 490 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~-------~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 490 (525)
|+|.|+|++|++|+.. +.+||||+++++++.+||++++++.||+|||.|.|.+.+...+..|.|+|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-- 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-- 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC--
Confidence 7899999999999863 2489999999998888999999999999999999998765444589999999986
Q ss_pred cCCCCCccceEEEEEccccccch
Q 009797 491 GLLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 491 ~~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
+++|++||++.++|.++..+.
T Consensus 79 --~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 79 --FSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred --CCCCcceEEEEEEHHHHHhhC
Confidence 688999999999999986554
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-17 Score=138.95 Aligned_cols=118 Identities=28% Similarity=0.502 Sum_probs=95.8
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCC--C
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK--H 339 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~--d 339 (525)
|+|+|++|++|+..+..+.+||||++++++. ..++|++++++.||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGG--QTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCc--cceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 7899999999999998899999999999753 23699999999999999999999965 6799999999998765 5
Q ss_pred CccEEEEEECcccCCCC-CeeEEEecccccccCCCCCCceeeEEEEEE
Q 009797 340 DKMGMNVVPLKELTPEE-PSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (525)
++||++.+++.++.... ....|+++.+. .+ ...+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~-~~--~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKL-KK--SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecC-CC--CCCceEeeEEEEEe
Confidence 79999999999997654 33556665321 11 12456789998876
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-17 Score=142.11 Aligned_cols=101 Identities=26% Similarity=0.409 Sum_probs=87.5
Q ss_pred CCCceeEEEEEEEeccCCcccCcC-CCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~ 329 (525)
+....+.|.|+|++|+||+.++.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 445578999999999999999875 899999999997554 3356999999999999999999998642 35689999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCC
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPE 355 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~ 355 (525)
|||++..+++++||++.|+|.++...
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~ 115 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFE 115 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccC
Confidence 99999999999999999999999654
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-17 Score=143.65 Aligned_cols=95 Identities=25% Similarity=0.335 Sum_probs=86.3
Q ss_pred CcceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
..|.|+|.|.+|.||..+ +.+||||.+.+++++.||+++++++||+|||.|+|.+.++ +..|.++|||+|.
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~---- 77 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDT---- 77 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCC----
Confidence 478999999999999763 6799999999999999999999999999999999999986 5699999999997
Q ss_pred CCCCccceEEEEEccccccchhhh
Q 009797 493 LHPKVLFQFYFIFYLVHRFKQECC 516 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~~~~~~ 516 (525)
+++|++||.+.|++..+...++.+
T Consensus 78 fs~dD~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 78 FSSDDFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred CCcccccceeeeccHHHHHHhhhh
Confidence 899999999999999986665444
|
|
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.7e-17 Score=138.78 Aligned_cols=117 Identities=31% Similarity=0.488 Sum_probs=99.4
Q ss_pred EEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEecCCCCCCCccE
Q 009797 266 VVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVGKHDKMG 343 (525)
Q Consensus 266 v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~d~~lG 343 (525)
|++|++|+. ..|.+||||++++++.+ ++|++++++.||+|||+|.|.+... ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 57899999999998654 5999999999999999999999754 4688999999999988999999
Q ss_pred EEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCC
Q 009797 344 MNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE 393 (525)
Q Consensus 344 ~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 393 (525)
++.++++++..+.....+++|... ......|+|+++++|.|...
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCCC
Confidence 999999999988777778877421 12345799999999998643
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-17 Score=140.75 Aligned_cols=113 Identities=17% Similarity=0.272 Sum_probs=94.6
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC---CeEEEee
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEERKTK 452 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~---~~~~kT~ 452 (525)
+|+|++++.|.| ..|.|.|+|++|+||+.. +.+||||++++. .+.++|+
T Consensus 2 ~G~l~~sl~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~ 56 (124)
T cd08387 2 RGELHFSLEYDK-------------------------DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSK 56 (124)
T ss_pred CCEEEEEEEECC-------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCc
Confidence 699999999986 468999999999999863 579999999994 2357999
Q ss_pred eecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 453 HVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
+++++.||+|||.|.|.+..... +..|.|+|||++. ++++++||++.+++.++..++ ....||.
T Consensus 57 v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~----~~~~~~iG~~~i~l~~~~~~~----~~~~W~~ 121 (124)
T cd08387 57 IHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ----FSRDECIGVVELPLAEVDLSE----KLDLWRK 121 (124)
T ss_pred eEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC----CCCCceeEEEEEecccccCCC----CcceEEE
Confidence 99999999999999999875432 3489999999975 778999999999999986543 4466763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=139.56 Aligned_cols=120 Identities=25% Similarity=0.450 Sum_probs=97.9
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC---------CCCeEEEEEE
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---------ESQAVELAVY 331 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---------~~~~L~i~v~ 331 (525)
.|+|+|++|++|+.+|..|.+||||++++++.. ++|++++++.||.|||+|.|.+... ....|.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999998654 6899999999999999999975432 1257999999
Q ss_pred ecCCCCCCCccEEEEE-ECcccCC---CCCeeEEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 332 DWEQVGKHDKMGMNVV-PLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i-~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
|++..++|++||++.+ ++..+.. ......|++|.+ .+...|+|.+++++.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence 9999999999999987 5444443 345567777632 24579999999999874
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-17 Score=139.66 Aligned_cols=110 Identities=35% Similarity=0.547 Sum_probs=94.3
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeC---CCCCeEEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVY 331 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~ 331 (525)
+....+.|.|+|++|+||+..+..+.+||||++++.+......+|++++++.||.|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 345678999999999999999988999999999996444445799999999999999999997532 23467999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|++..+++++||++.++++++..+.....|+.|
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 999999999999999999999987777788776
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-17 Score=138.16 Aligned_cols=106 Identities=26% Similarity=0.398 Sum_probs=89.1
Q ss_pred ccccCCCc-cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeC-CCC
Q 009797 246 VPILDPSK-AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-PES 323 (525)
Q Consensus 246 ~~i~~~~~-~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~-~~~ 323 (525)
.|+++... ......|.|+|+|++|++|+. +..+.+||||+|++++. .++|++++++.||+|||+|.|.... ...
T Consensus 13 ~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~~ 88 (127)
T cd04032 13 SPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSPG 88 (127)
T ss_pred CCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCCC
Confidence 45665544 346789999999999999984 66788999999999866 3699999999999999999997533 346
Q ss_pred CeEEEEEEecCCCCCCCccEEEEEECcccCCC
Q 009797 324 QAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 355 (525)
Q Consensus 324 ~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~ 355 (525)
+.|.|+|||++..++|++||++.++|.....+
T Consensus 89 ~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 89 GKLRFEVWDRDNGWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CEEEEEEEeCCCCCCCCeeEEEEEEecCCcee
Confidence 79999999999999999999999999976643
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-17 Score=139.30 Aligned_cols=109 Identities=32% Similarity=0.434 Sum_probs=94.8
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEE-eeC--CCCCeEEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT-VRD--PESQAVELAVY 331 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~-v~~--~~~~~L~i~v~ 331 (525)
+....+.|.|+|++|+||+..+..|.+||||++.+.+.+..+++|+++++ .||+|||+|.|. +.. .....|.++||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 45567899999999999999998889999999988766555679999888 999999999998 542 23678999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|++..+++++||++.++|+++..+.....|++|
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 999999999999999999999888777888876
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-17 Score=135.10 Aligned_cols=98 Identities=33% Similarity=0.521 Sum_probs=86.4
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
.|.|+|++|++|+..+..+.+||||++++++.. ++|++++++.||+|||+|.|.+.++..+.|.++|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTT---QKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEE---EeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 389999999999999888999999999998743 689999999999999999999998777899999999975 88
Q ss_pred ccEEEEEECcccCCCC--CeeEEEec
Q 009797 341 KMGMNVVPLKELTPEE--PSVKTLDL 364 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~--~~~~~~~l 364 (525)
+||++.++|.++.... ....|++|
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L 100 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPL 100 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEec
Confidence 9999999999998654 34567766
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-17 Score=139.45 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=94.7
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC---eEEEee
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTK 452 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~---~~~kT~ 452 (525)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ +.++|+
T Consensus 2 ~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~ 56 (124)
T cd08385 2 LGKLQFSLDYDF-------------------------QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETK 56 (124)
T ss_pred ccEEEEEEEEeC-------------------------CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecc
Confidence 699999999976 477899999999999863 5789999999854 356999
Q ss_pred eecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 453 HVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
+++++.||+|||.|.|.+..... ...|.|+|||++. ++++++||++.+++.++.. .....+||+
T Consensus 57 v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~lG~~~i~l~~~~~----~~~~~~W~~ 121 (124)
T cd08385 57 VHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR----FSKHDLIGEVRVPLLTVDL----GHVTEEWRD 121 (124)
T ss_pred cCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEEecCcccC----CCCcceEEE
Confidence 99999999999999999875322 3589999999975 6789999999999999754 445677764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=135.70 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=81.9
Q ss_pred cceEEEEEEeeecCCCC--CCCCcEEEEEECCeEEEeeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 417 GGLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~--~~~dPyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
.|.|.|+|++|++++.. +.+||||++.+++++.+|+++++ +.||+|||+|+|.+.+. .+.|.|+|||++. +
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~----~ 74 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERA----F 74 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCC----C
Confidence 37899999999988753 68999999999999999999876 79999999999999763 3589999999986 7
Q ss_pred CCCccceEEEEEcc-ccccchhhhcccCCCC
Q 009797 494 HPKVLFQFYFIFYL-VHRFKQECCRMKNDPF 523 (525)
Q Consensus 494 ~~d~~lG~v~I~l~-~~~~~~~~~~~~~~~~ 523 (525)
++|++||++.|++. .+..++ ..+.||
T Consensus 75 ~~dd~iG~~~i~l~~~~~~g~----~~~~W~ 101 (121)
T cd04016 75 TMDERIAWTHITIPESVFNGE----TLDDWY 101 (121)
T ss_pred cCCceEEEEEEECchhccCCC----CccccE
Confidence 88999999999996 454432 246666
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-17 Score=138.77 Aligned_cols=105 Identities=19% Similarity=0.314 Sum_probs=87.3
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCC-CCeEEEEEEecC
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 334 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~ 334 (525)
..+.|.|+|++|+||+.++ .|.+||||++++.+.. ..++||++++++.||.|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4688999999999999998 7899999999997643 23468999999999999999999986422 357899999998
Q ss_pred CCC-CCCccEEEEEECcccCCCCCeeEEEe
Q 009797 335 QVG-KHDKMGMNVVPLKELTPEEPSVKTLD 363 (525)
Q Consensus 335 ~~~-~d~~lG~~~i~L~~l~~~~~~~~~~~ 363 (525)
... ++++||++.+++.++..+.....|+.
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~ 118 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYY 118 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEe
Confidence 765 47899999999999986655555654
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.8e-17 Score=138.83 Aligned_cols=116 Identities=22% Similarity=0.289 Sum_probs=95.0
Q ss_pred eeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEE
Q 009797 378 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EER 449 (525)
Q Consensus 378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~ 449 (525)
+.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ .++
T Consensus 1 ~~G~l~~~l~y~~-------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~ 55 (127)
T cd04030 1 PLGRIQLTIRYSS-------------------------QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRR 55 (127)
T ss_pred CCeEEEEEEEEeC-------------------------CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceE
Confidence 3699999999986 478899999999999864 5799999999963 467
Q ss_pred EeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
||++++++.||+|||+|.|.+..... ...|.+.|||.+.. +.+++++||++.|++.++..+ ...+.||.
T Consensus 56 kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~--~~~~~~~iG~~~i~l~~l~~~----~~~~~W~~ 125 (127)
T cd04030 56 KTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSF--LSREKKLLGQVLIDLSDLDLS----KGFTQWYD 125 (127)
T ss_pred ecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcc--cCCCCceEEEEEEeccccccc----CCccceEE
Confidence 99999999999999999999875422 35899999999741 016799999999999998443 34577874
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.9e-17 Score=138.49 Aligned_cols=110 Identities=30% Similarity=0.428 Sum_probs=93.4
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 330 (525)
+....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 345678999999999999999988999999999996533 3457999999999999999999998532 356899999
Q ss_pred EecCCC--CCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 331 YDWEQV--GKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~--~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
||++.. +++++||++.+++.++..+.....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999877666777765
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.4e-17 Score=138.48 Aligned_cols=110 Identities=27% Similarity=0.479 Sum_probs=92.3
Q ss_pred CCCceeEEEEEEEeccCCcccC-cCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~ 329 (525)
+....+.|.|+|++|+||+..+ ..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 3456789999999999999988 67899999999985432 2357899999999999999999998642 25689999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|||++..+++++||++.++|.++..+.....|++|
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99999999999999999999999766656666653
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=137.63 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=88.0
Q ss_pred eeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECC---eEEE
Q 009797 378 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG---EERK 450 (525)
Q Consensus 378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~---~~~k 450 (525)
+.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. +++|
T Consensus 1 ~~G~l~~~l~y~~-------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~k 55 (128)
T cd08388 1 KLGTLFFSLRYNS-------------------------EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVK 55 (128)
T ss_pred CCeEEEEEEEEEC-------------------------CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceee
Confidence 3799999999986 467899999999999862 5689999999853 3569
Q ss_pred eeeecCCCCCcccceEEEE-ecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 451 TKHVKKNRDPRWEEEFQFM-LEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
|++++++.||+|||+|.|. +..... +..|.++|||++. +++|++||++.|+|.++...
T Consensus 56 T~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~----~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 56 TRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR----YSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred ccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC----CCCCceeEEEEEeccccCCC
Confidence 9999999999999999994 442222 2479999999975 77899999999999998544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=137.44 Aligned_cols=112 Identities=21% Similarity=0.316 Sum_probs=92.0
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~k 450 (525)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ .++|
T Consensus 2 ~G~l~~~l~~~~-------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~k 56 (125)
T cd04031 2 TGRIQIQLWYDK-------------------------VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRR 56 (125)
T ss_pred cEEEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCcccccc
Confidence 599999999986 478899999999999863 5799999999965 4569
Q ss_pred eeeecCCCCCcccceEEEEecCC-C-CCCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEP-P-TNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~-~-~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
|++++++.||+|||+|+|.+... + ....|.|+|||++. ++.+++||++.++|.+.. .+...+||.
T Consensus 57 T~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~----~~~~~~iG~~~i~l~~~~-----~~~~~~W~~ 123 (125)
T cd04031 57 TKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR----DGENDFLGEVVIDLADAL-----LDDEPHWYP 123 (125)
T ss_pred ccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC----CCCCcEeeEEEEeccccc-----ccCCcceEE
Confidence 99999999999999999986442 1 23589999999975 678999999999999832 123467874
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=137.51 Aligned_cols=109 Identities=27% Similarity=0.497 Sum_probs=89.3
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC---CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~ 329 (525)
+....+.|.|+|++|++|+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 344578999999999999999988999999999997532 2356899999999999999999986432 35789999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|||++..+++++||++.++|++... .....|++|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 9999998899999999999998332 233456654
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=136.20 Aligned_cols=110 Identities=31% Similarity=0.467 Sum_probs=95.0
Q ss_pred CCCceeEEEEEEEeccCCcccC-cCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVY 331 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~ 331 (525)
+....+.|.|+|++|++|+..+ ..+.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 4556789999999999999998 678899999999865433457899999999999999999998643 2457999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|++..+++++||++.++|.++........|++|
T Consensus 89 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 89 DVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred ECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 999888999999999999999988877788876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-16 Score=134.85 Aligned_cols=115 Identities=29% Similarity=0.503 Sum_probs=94.1
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCC----
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV---- 336 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~---- 336 (525)
.|+|+|++|++|+..|..|.+||||++++++.. .+|++++++.||.|||+|.|.+..+ ...|.++|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 689999999999999988999999999997543 6899999999999999999998654 56899999999852
Q ss_pred -------CCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEE
Q 009797 337 -------GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (525)
Q Consensus 337 -------~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (525)
+.+++||++.+++.++... ...|+.|.+.. .....+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT-----DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC-----CCCcEeEEEEEEC
Confidence 4789999999999988644 34666664321 2356799998864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.4e-17 Score=141.72 Aligned_cols=105 Identities=34% Similarity=0.529 Sum_probs=89.7
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcC--------------------------CceeeeecCCCCC
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL--------------------------PSKKTTVKHKNLN 307 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~--------------------------~~~kT~v~~~t~n 307 (525)
....+.+.|.|+|++|++|+.+|..|.+||||++.+.+... ..++|+++++++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 45678999999999999999999999999999999864311 2368999999999
Q ss_pred CeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCeeEEEe
Q 009797 308 PEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 363 (525)
Q Consensus 308 P~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 363 (525)
|.|||+|.|.+.....+.|.|+|||++ +++||++.++++++.. .....|++
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~ 152 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFK 152 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEe
Confidence 999999999998766789999999997 8899999999999983 33455654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-17 Score=156.43 Aligned_cols=236 Identities=22% Similarity=0.338 Sum_probs=175.0
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEE--EeeCC-CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNF--TVRDP-ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f--~v~~~-~~~~L~i~ 329 (525)
+......+..++.+|++|+.++.++..|||++..+.+. +..+.+|++..+++||.|+|+-.. ...+. ....+++.
T Consensus 88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence 44556788999999999999999999999999998753 233457888999999999976544 33322 24567889
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEeccccccc--CCCCCCceeeEEEEEEEEEecCCCCCCCccccccccc
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDL--NDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQ 407 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~--~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~ 407 (525)
|.|.+.+...+++|+..+++..+...+.+.+..-|.+.+.. .+......+|++.+++.|-.
T Consensus 168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s----------------- 230 (362)
T KOG1013|consen 168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS----------------- 230 (362)
T ss_pred eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc-----------------
Confidence 99999999999999999999999887654332222222221 11222467888888887743
Q ss_pred CCCCCCCCCcceEEEEEEeeecCCC---CCCCCcEEEEEECCe-----EEEeeeecCCCCCcccceEEEEecCCCC-CCe
Q 009797 408 KAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDR 478 (525)
Q Consensus 408 ~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~ 478 (525)
...-+.|++.+|.+|.. ++.+||||+.++... ++||.+.++|.||+||+.|.|.+....+ ..+
T Consensus 231 --------~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~k 302 (362)
T KOG1013|consen 231 --------TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKK 302 (362)
T ss_pred --------CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcce
Confidence 34558888899988875 468999999998642 4699999999999999999999987544 348
Q ss_pred EEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCCC
Q 009797 479 LHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFRQ 525 (525)
Q Consensus 479 l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~~ 525 (525)
+.|.|||.+.+ ...+++|-...+.-. .-.-.++|++|
T Consensus 303 v~lsvgd~~~G----~s~d~~GG~~~g~~r------r~~v~~h~gr~ 339 (362)
T KOG1013|consen 303 VALSVGDYDIG----KSNDSIGGSMLGGYR------RGEVHKHWGRC 339 (362)
T ss_pred EEEeecccCCC----cCccCCCcccccccc------cchhhcCcccc
Confidence 99999999763 357778776654433 44556666654
|
|
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=141.60 Aligned_cols=115 Identities=22% Similarity=0.302 Sum_probs=92.4
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC-----CeEEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~-----~~~~k 450 (525)
+|+|.+++.|.|...+.. +.......|.|.|+|++|+||+.. +.+||||++++. ..++|
T Consensus 1 ~G~l~~~l~y~~~~~~~~-------------~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~k 67 (162)
T cd04020 1 RGELKVALKYVPPESEGA-------------LKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQK 67 (162)
T ss_pred CceEEEEEEecCcccccc-------------ccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCccee
Confidence 599999999998654311 122334789999999999999874 578999999984 24679
Q ss_pred eeeecCCCCCcccceEEEEecCC-C-CCCeEEEEEEEcccCccCCCCCccceEEEEEccccc
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEP-P-TNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~-~-~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
|++++++.||+|||.|.|.+... . .+..|.|+|||++. ++++++||++.+++.++.
T Consensus 68 T~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~----~~~d~~lG~v~i~l~~~~ 125 (162)
T cd04020 68 TPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK----LSSNDFLGGVRLGLGTGK 125 (162)
T ss_pred CCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC----CCCCceEEEEEEeCCccc
Confidence 99999999999999999986422 1 23479999999986 678999999999999874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-16 Score=132.98 Aligned_cols=113 Identities=37% Similarity=0.589 Sum_probs=96.4
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCc
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (525)
|+|+|++|++|+..+..+.+||||++.+.+.. .++|+++.++.||.|||+|.|.+.....+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999999888899999999997643 3699999999999999999999976557889999999998889999
Q ss_pred cEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEE
Q 009797 342 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLV 383 (525)
Q Consensus 342 lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~ 383 (525)
||++.+++.++..+.....++++.. .++...|.|.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~-------~g~~~~~~~~ 113 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDG-------QGGGKLGAVF 113 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcC-------CCCccCceEE
Confidence 9999999999998877888888743 2344556654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=132.43 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=82.9
Q ss_pred cceEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCC
Q 009797 417 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPK 496 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d 496 (525)
++.|.|+|++||+|+..+..||||++.+++++.+|+++++ .||.|||.|.|.+.+. +..|.|+|||++. ..|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd~-----~~D 72 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKGL-----IWD 72 (127)
T ss_pred CceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCCC-----cCC
Confidence 3689999999999998888899999999998889999988 5999999999999764 3469999999863 389
Q ss_pred ccceEEEEEccccccchhhhcccCCCCC
Q 009797 497 VLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 497 ~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
++||++.|+|.++...+. .-...||.
T Consensus 73 D~lG~v~i~L~~v~~~~~--~~~~~Wy~ 98 (127)
T cd08394 73 TLVGTVWIPLSTIRQSNE--EGPGEWLT 98 (127)
T ss_pred CceEEEEEEhHHcccCCC--CCCCccEe
Confidence 999999999999876532 33366763
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=134.04 Aligned_cols=100 Identities=28% Similarity=0.446 Sum_probs=85.7
Q ss_pred EEEEEEeccCCcccCc-CCCCCcEEEEEEcCCcCCceeeeecCCCCCCeE-eeEEEEEeeCC--CCCeEEEEEEecCCCC
Q 009797 262 LHVKVVKAMNLKKKDL-LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEW-NEEYNFTVRDP--ESQAVELAVYDWEQVG 337 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w-~e~f~f~v~~~--~~~~L~i~v~d~~~~~ 337 (525)
|.|+|++|++|+.++. .|.+||||++++++. .++|+++++++||.| ||+|.|.+... ..+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999998884 688999999999863 369999999999999 99999999753 2468999999999999
Q ss_pred CCCccEEEEEECcccCCC---CCeeEEEec
Q 009797 338 KHDKMGMNVVPLKELTPE---EPSVKTLDL 364 (525)
Q Consensus 338 ~d~~lG~~~i~L~~l~~~---~~~~~~~~l 364 (525)
++++||++.+++.++... .....|++|
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l 107 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPI 107 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEc
Confidence 999999999999999873 234556665
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.9e-16 Score=135.64 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=96.7
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC--------CCeEEEE
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--------SQAVELA 329 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--------~~~L~i~ 329 (525)
|.|+|....+.+|+..+..+.+||||++++ .+....+.||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 444554444444777777789999999997 333445679999999999999999999996432 4579999
Q ss_pred EEecCCC-CCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 330 VYDWEQV-GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 330 v~d~~~~-~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
|||++.+ ++|++||++.++|+.+..+.....++++... .....|.|+++++...
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecC
Confidence 9999876 5799999999999999887666678887531 2456789999998754
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=136.05 Aligned_cols=103 Identities=33% Similarity=0.564 Sum_probs=89.8
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecC-CCCCCeEeeEEEEEeeCC---CCCeEEEEEEecCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDP---ESQAVELAVYDWEQ 335 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~~~ 335 (525)
|.|.|+|++|++|+..+..+.+||||++++++.. ++|++.+ ++.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999998888899999999997654 4788777 489999999999999875 25789999999999
Q ss_pred CCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
.+++++||++.+++.++..+.....|+.+.
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 889999999999999998877667777663
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.68 E-value=9e-17 Score=139.37 Aligned_cols=108 Identities=27% Similarity=0.326 Sum_probs=88.1
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v 330 (525)
+....+.|.|+|++|+||+..+..|.+||||++++.+.. ..++||+++++++||+|||+|.|.+.. .....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 345578899999999999999988999999999996532 335689999999999999999999864 3467899999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
||++..+++++||++.++.... +...+.|.++
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~m 121 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQM 121 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHH
Confidence 9999999999999999977643 3334444443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=135.92 Aligned_cols=115 Identities=25% Similarity=0.389 Sum_probs=94.7
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecC-CCCCCeEeeEEEEEeeCCC----CCeEEEEEEecCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQ 335 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~ 335 (525)
.|+|+|++|++|+..+..+.+||||++++++.. .++|++.. ++.||.|||+|.|.+.... ...|.++|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 489999999999999888999999999998722 25888875 6899999999999997653 6789999999998
Q ss_pred CCCCCccEEEEEECcccCCCCC-----eeEEEecccccccCCCCCCceeeEEEE
Q 009797 336 VGKHDKMGMNVVPLKELTPEEP-----SVKTLDLLKNMDLNDGQNEKSRGQLVV 384 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l 384 (525)
.++|++||++.+++.++..+.. ...|+.+.. .+++.+|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~-------~~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRR-------PSGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeEC-------CCCCcCeEEeC
Confidence 8899999999999999987654 245666542 13678888864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=141.44 Aligned_cols=109 Identities=29% Similarity=0.392 Sum_probs=91.9
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeC---CCCCeEEEEE
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAV 330 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v 330 (525)
..+.|.|.|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 3468999999999999999998899999999998542 2345799999999999999999998532 2345799999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
||++..+++++||++.+++.++........|+.+
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 9999999999999999999999866666666654
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-16 Score=130.92 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=82.9
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (525)
++.|.|+|++|++|+.++ ..||||++++++.+ .+|++.++ .||+|||+|.|.+.+. ...|.++|||++.. .
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~-~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLI-W 71 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCc-C
Confidence 378999999999997644 56999999998754 58888877 5999999999999775 44599999999865 8
Q ss_pred CCccEEEEEECcccCCCCCe--eEEEeccccc
Q 009797 339 HDKMGMNVVPLKELTPEEPS--VKTLDLLKNM 368 (525)
Q Consensus 339 d~~lG~~~i~L~~l~~~~~~--~~~~~l~~~~ 368 (525)
||+||++.++|+++..+... ..|++|....
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV 103 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence 99999999999999866543 5677765433
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-16 Score=136.89 Aligned_cols=102 Identities=20% Similarity=0.315 Sum_probs=87.0
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC--CCCCcEEEEEECC-----eEEEe
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK--HHTNPYARILFRG-----EERKT 451 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~--~~~dPyv~v~l~~-----~~~kT 451 (525)
.|+|++++.|.| ..+.|.|+|++|+||+.. +.+||||++++.+ +++||
T Consensus 1 ~G~i~~sl~y~~-------------------------~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT 55 (137)
T cd08409 1 LGDIQISLTYNP-------------------------TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKT 55 (137)
T ss_pred CcEEEEEEEECC-------------------------CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeec
Confidence 489999999987 367899999999999764 5689999999864 35699
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEcccc
Q 009797 452 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~ 509 (525)
++++++.||+|||.|.|.++..+.. ..|.|+|||.+. .+++++||++.|+....
T Consensus 56 ~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 56 EVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG----VRKSKLLGRVVLGPFMY 110 (137)
T ss_pred ccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC----CCCcceEEEEEECCccc
Confidence 9999999999999999999754444 489999999986 67899999999997654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=133.49 Aligned_cols=102 Identities=28% Similarity=0.481 Sum_probs=89.4
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (525)
|+|+|+|++|++|+..+..|.+||||++++++.. .++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999997543 36899999999999999999998764 57899999999999999
Q ss_pred CccEEEEEECcccCCCCCeeEEEecc
Q 009797 340 DKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
++||++.+++.++..+ ....|+.+.
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~ 102 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEY 102 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEec
Confidence 9999999999999877 455566554
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=137.21 Aligned_cols=93 Identities=41% Similarity=0.693 Sum_probs=85.1
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (525)
.|.|+|+|++|++|+..+. +.+||||+++++++. .+|++++++.||+|||+|.|.+.++ ...+.++|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 3899999999999998887 899999999998654 6999999999999999999999876 6789999999999999
Q ss_pred CCccEEEEEECcccCCCC
Q 009797 339 HDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 339 d~~lG~~~i~L~~l~~~~ 356 (525)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999988653
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=130.11 Aligned_cols=96 Identities=22% Similarity=0.361 Sum_probs=82.1
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
.|.|+|++|+||+.. +.+||||+++++++.++|+++++|.||+|||.|+|.+.++ ..+.|.|+|+|++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~------- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT------- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC-------
Confidence 388999999999863 5799999999999999999999999999999999999875 45689999999952
Q ss_pred CccceEEEEEccccccchhhhcccCCCCC
Q 009797 496 KVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
+++||++.++|.++.... ....+.||.
T Consensus 73 ~~~iG~~~i~l~~l~~~~--~~~~~~w~~ 99 (105)
T cd04050 73 GKSLGSLTLPLSELLKEP--DLTLDQPFP 99 (105)
T ss_pred CCccEEEEEEHHHhhccc--cceeeeeEe
Confidence 789999999999986442 334677773
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-16 Score=134.72 Aligned_cols=120 Identities=27% Similarity=0.432 Sum_probs=94.4
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
+|+|+|++|++|+..+..|.+||||++++++... ..+|++++++.||+|||+|.|.+..+..+.|.++|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4789999999999999889999999999987652 357888889999999999999987666789999999999999999
Q ss_pred ccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 341 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
+||++.+++.+..-. .++.+.-+ . ......|.++....+.|
T Consensus 80 ~iG~~~i~l~~~~~~-~~~~~~~~----~----~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 80 LIGETVIDLEDRFFS-KHRATCGL----P----PTYEESGPNQWRDSLKP 120 (124)
T ss_pred eeEEEEEeecccccc-hHHHhccC----C----CcccccCceecCcccCc
Confidence 999999999977642 22222211 1 11335677776665544
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-16 Score=136.76 Aligned_cols=101 Identities=17% Similarity=0.253 Sum_probs=86.8
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC------eEEE
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG------EERK 450 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~------~~~k 450 (525)
|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. .++|
T Consensus 2 ~ei~~sL~Y~~-------------------------~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~k 56 (138)
T cd08408 2 PELLLGLEYNA-------------------------LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSK 56 (138)
T ss_pred CeEEEEeEEcC-------------------------CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeecc
Confidence 78999999976 478899999999999863 5789999999953 2459
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEcccc
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~ 509 (525)
|++++++.||+|||+|.|.+..... +..|.|+|||.+. ++++++||++.+++...
T Consensus 57 T~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 57 TSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK----MKRKEMIGWFSLGLNSS 112 (138)
T ss_pred ceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC----CCCCcEEEEEEECCcCC
Confidence 9999999999999999999986433 3489999999986 67899999999999874
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-16 Score=135.08 Aligned_cols=87 Identities=22% Similarity=0.202 Sum_probs=77.2
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCC----CCCCeEEEEEEEcccCccC
Q 009797 420 LVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEP----PTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 420 L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~~l~i~V~d~~~~~~~ 492 (525)
++|+|++|+||+.. +.+||||+++++++++||++++++.||+|||.|+|.+... .....|.++|||++.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~---- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL---- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc----
Confidence 47999999999863 5799999999999999999999999999999999999762 234689999999975
Q ss_pred CCCCccceEEEEEccccc
Q 009797 493 LHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~ 510 (525)
+++|++||++.|+|.++.
T Consensus 77 ~~~d~~iG~~~i~l~~l~ 94 (126)
T cd08682 77 LGLDKFLGQVSIPLNDLD 94 (126)
T ss_pred cCCCceeEEEEEEHHHhh
Confidence 678999999999999975
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.1e-16 Score=135.60 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=89.3
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC--e---EEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG--E---ERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~--~---~~k 450 (525)
+|+|.++++|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ + ++|
T Consensus 1 ~G~l~~~l~y~~-------------------------~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~k 55 (136)
T cd08404 1 RGELLLSLCYQP-------------------------TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKK 55 (136)
T ss_pred CCeEEEEEEEeC-------------------------CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEc
Confidence 599999999975 467899999999999863 5789999999853 2 458
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhh
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECC 516 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~ 516 (525)
|++++++.||+|||+|.|.+..... ...|.|+|||++. ++++++||++.+++.+...+.+.|
T Consensus 56 T~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~----~~~~~~iG~~~~~~~~~~~~~~~w 118 (136)
T cd08404 56 THVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR----VTKNEVIGRLVLGPKASGSGGHHW 118 (136)
T ss_pred CccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC----CCCCccEEEEEECCcCCCchHHHH
Confidence 9999999999999999999875433 2479999999986 778999999999999843333333
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-16 Score=132.64 Aligned_cols=93 Identities=23% Similarity=0.324 Sum_probs=78.2
Q ss_pred eEEEEEEeeec---CCC---CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc--
Q 009797 419 LLVVIVHEAQD---VEG---KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI-- 490 (525)
Q Consensus 419 ~L~V~v~~a~~---L~~---~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~-- 490 (525)
+|.|+|++|++ |+. .+.+||||++.+++++.||++++++.||+|||+|.|.+.++ ...|.|+|||++...
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 48999999999 654 36899999999999999999999999999999999999864 358999999997510
Q ss_pred cCCCCCccceEEEEEccccccch
Q 009797 491 GLLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 491 ~~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
+-.++|++||++.+++.++..+.
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~ 101 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDR 101 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCC
Confidence 00147999999999999986553
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-16 Score=137.02 Aligned_cols=108 Identities=28% Similarity=0.376 Sum_probs=88.2
Q ss_pred CCCceeEEEEEEEeccCCcccCc--CCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDL--LGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVEL 328 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i 328 (525)
+....+.|.|+|++|+||+..+. .+.+||||++++..+ +..++||++++++.||+|||+|.|.+... ....|.|
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 34567899999999999999883 355899999999764 33467999999999999999999998742 3567999
Q ss_pred EEEecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 329 AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
+|||++..+++++||++.+++.. .+...++|.+.
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 99999999999999999999975 33344455544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-16 Score=132.84 Aligned_cols=112 Identities=16% Similarity=0.288 Sum_probs=92.6
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECC-----eEEE
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EERK 450 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~-----~~~k 450 (525)
|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ .+++
T Consensus 1 G~i~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~k 55 (123)
T cd08521 1 GEIEFSLSYNY-------------------------KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRK 55 (123)
T ss_pred CeEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceee
Confidence 88999999975 478899999999999753 4789999999843 3569
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
|++++++.||+|||+|.|.+..... ...|.|+|||++. ++++++||++.++|.++..+ .....||.
T Consensus 56 T~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~l~~~----~~~~~w~~ 122 (123)
T cd08521 56 TSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR----FGRNTFLGEVEIPLDSWDLD----SQQSEWYP 122 (123)
T ss_pred ccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC----CcCCceeeEEEEeccccccc----CCCccEEE
Confidence 9999999999999999999876432 3589999999975 67899999999999998533 34577874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-16 Score=135.57 Aligned_cols=101 Identities=20% Similarity=0.304 Sum_probs=85.6
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEe
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKT 451 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~kT 451 (525)
|+|.++++|.| ..|.|.|+|++|+||+.. +.+||||++++.+ ++++|
T Consensus 1 G~i~~~l~y~~-------------------------~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT 55 (135)
T cd08410 1 GELLLSLNYLP-------------------------SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKT 55 (135)
T ss_pred CcEEEEEEECC-------------------------CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcC
Confidence 88999999987 468899999999999863 5799999999832 34699
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEcccc
Q 009797 452 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~ 509 (525)
+++++|.||+|||+|.|.+...... ..|.|+|||++. .+++++||++.|+....
T Consensus 56 ~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 56 SCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV----KSSNDFIGRIVIGQYSS 110 (135)
T ss_pred ccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCcEEEEEEEcCccC
Confidence 9999999999999999999654333 379999999976 67899999999887664
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-16 Score=130.82 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=75.9
Q ss_pred eEEEEEEeeecCCCC--CCCCcEEEEEECC-------eEEEeeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEcc
Q 009797 419 LLVVIVHEAQDVEGK--HHTNPYARILFRG-------EERKTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVS 487 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~--~~~dPyv~v~l~~-------~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~i~V~d~~ 487 (525)
.|+|+|++|+||+.. +.+||||++++.| ++++|+++.+|.||+|||+|+|.+.... ....|.|.|+|++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 489999999999874 6789999999843 2458999999999999999999997531 2247999999997
Q ss_pred cCccCCCCCccceEEEEEccccccch
Q 009797 488 SRIGLLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 488 ~~~~~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
. .+.+++||++.+++.++..++
T Consensus 81 ~----~~~dd~IG~~~l~l~~~~~~~ 102 (120)
T cd08395 81 F----ARDDRLVGVTVLQLRDIAQAG 102 (120)
T ss_pred c----cCCCCEEEEEEEEHHHCcCCC
Confidence 4 577999999999999986554
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-16 Score=135.64 Aligned_cols=102 Identities=21% Similarity=0.312 Sum_probs=87.0
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~k 450 (525)
.|+|.+++.|.| ..|.|.|+|++|+||+.. +.+||||++++.+ ..++
T Consensus 1 ~G~l~~~l~y~~-------------------------~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~k 55 (136)
T cd08402 1 LGDICFSLRYVP-------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKK 55 (136)
T ss_pred CcEEEEEeEEcC-------------------------CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceee
Confidence 489999999987 478899999999999863 5799999999953 2458
Q ss_pred eeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEcccc
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~ 509 (525)
|++++++.||+|||.|.|.+...... ..|.|+|||++. +++|++||++.|++...
T Consensus 56 T~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 56 TTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR----IGKNDPIGKVVLGCNAT 111 (136)
T ss_pred ccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEECCccC
Confidence 99999999999999999998754332 379999999986 67899999999999874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-16 Score=134.63 Aligned_cols=100 Identities=32% Similarity=0.529 Sum_probs=86.8
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc----CCceeeeecCCCCCCeEeeEEEEEeeCC----CCCeEE
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDP----ESQAVE 327 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~t~nP~w~e~f~f~v~~~----~~~~L~ 327 (525)
....+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.
T Consensus 12 ~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 12 RASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred cCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 34568899999999999999888999999999997532 2457999999999999999999998652 256899
Q ss_pred EEEEecCCCCCCCccEEEEEECcccCCC
Q 009797 328 LAVYDWEQVGKHDKMGMNVVPLKELTPE 355 (525)
Q Consensus 328 i~v~d~~~~~~d~~lG~~~i~L~~l~~~ 355 (525)
++|||++..+++++||++.++|+++..-
T Consensus 92 ~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 92 FTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 9999999999999999999999999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-16 Score=131.77 Aligned_cols=94 Identities=24% Similarity=0.354 Sum_probs=81.6
Q ss_pred CCcceEEEEEEeeecCCC--CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 415 AGGGLLVVIVHEAQDVEG--KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 415 ~~~g~L~V~v~~a~~L~~--~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
...|.|.|+|++|++|+. .+.+||||+++++++.+||++++++.||+|||+|.|........+.|.|+|||++.
T Consensus 25 ~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~---- 100 (127)
T cd04032 25 RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN---- 100 (127)
T ss_pred CCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC----
Confidence 467899999999999985 35789999999999999999999999999999999985443345699999999986
Q ss_pred CCCCccceEEEEEccccccc
Q 009797 493 LHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~~ 512 (525)
++.|++||++.++|.....+
T Consensus 101 ~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 101 GWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCCCCeeEEEEEEecCCcee
Confidence 67899999999999986533
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-16 Score=135.03 Aligned_cols=103 Identities=20% Similarity=0.384 Sum_probs=87.3
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCC---CCCCCcEEEEEEC--C---eEEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFR--G---EERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~l~--~---~~~k 450 (525)
+|+|.++++|.+ ..+.|.|+|++|+||+. .+.+||||++++. + .+++
T Consensus 1 ~G~l~~sl~y~~-------------------------~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~k 55 (136)
T cd08405 1 RGELLLSLCYNP-------------------------TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKK 55 (136)
T ss_pred CcEEEEEEEEcC-------------------------CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCcccccc
Confidence 599999999986 47889999999999986 3579999999983 2 2458
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccc
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
|++++++.||+|||.|.|.+..... +..|.|+|||++. ++++++||++.+++.+..
T Consensus 56 T~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~lG~~~i~~~~~~ 112 (136)
T cd08405 56 TVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR----LSRNDLIGKIYLGWKSGG 112 (136)
T ss_pred CcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC----CCCCcEeEEEEECCccCC
Confidence 9999999999999999999864322 3589999999975 778999999999999853
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.7e-16 Score=163.09 Aligned_cols=130 Identities=24% Similarity=0.457 Sum_probs=109.2
Q ss_pred ceeEEEEEEEeccCCcccCc------------------------------------------CCCCCcEEEEEEcCCcCC
Q 009797 258 PVGILHVKVVKAMNLKKKDL------------------------------------------LGASDPYVKLKITEDKLP 295 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~ 295 (525)
-.|.|.++|.+|++|+++|. .+++||||+|.+++.+
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~r-- 89 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQAT-- 89 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcc--
Confidence 46899999999999885321 2467999999997654
Q ss_pred ceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCC
Q 009797 296 SKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQN 375 (525)
Q Consensus 296 ~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~ 375 (525)
..||++++++.||+|||+|.|.+.++ ...|.|+|||+|.++ +++||++.+|++++..++....|+++..... +.
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp 163 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KP 163 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CC
Confidence 36999999999999999999999886 458999999999986 5899999999999999988999999876432 23
Q ss_pred CceeeEEEEEEEEEecCCCC
Q 009797 376 EKSRGQLVVEFIYKPFKEED 395 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~ 395 (525)
.+..|+|+++++|.|.....
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCCcEEEEEEEEEEccccc
Confidence 56678999999999987763
|
|
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.65 E-value=8e-16 Score=135.33 Aligned_cols=93 Identities=30% Similarity=0.565 Sum_probs=81.5
Q ss_pred EEEEEEEeccCCcccCcCC--------------CCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC-CCe
Q 009797 261 ILHVKVVKAMNLKKKDLLG--------------ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQA 325 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~ 325 (525)
.|.|+|++|++|+.+|..+ .+||||++.+++.+ .+|++++++.||+|||+|.|.+..+. .+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~---~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK---VKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe---eecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 68999999998765 48999999999999999999976443 568
Q ss_pred EEEEEEecCCCCCCCccEEEEEECcccCCCC
Q 009797 326 VELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 326 L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
|.++|||++..++|++||++.+++.++....
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999987654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=130.90 Aligned_cols=105 Identities=17% Similarity=0.211 Sum_probs=87.9
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC---CeEEEee
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEERKTK 452 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~---~~~~kT~ 452 (525)
.|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++. +...+|+
T Consensus 2 ~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~ 56 (125)
T cd08386 2 LGRIQFSVSYDF-------------------------QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETK 56 (125)
T ss_pred ccEEEEEEEECC-------------------------CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeee
Confidence 699999999976 467899999999999763 578999999993 3567999
Q ss_pred eecCCCCCcccceEEEEecCC--CCCCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 453 HVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~--~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
+++++.||+|||.|.|.+... .....|.++|||++. ++++++||++.+++.++..+
T Consensus 57 v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~----~~~~~~iG~~~i~l~~l~~~ 114 (125)
T cd08386 57 VKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR----FSRNDPIGEVSLPLNKVDLT 114 (125)
T ss_pred eecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC----CcCCcEeeEEEEecccccCC
Confidence 999999999999999975321 123479999999986 67899999999999998643
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-15 Score=129.72 Aligned_cols=118 Identities=25% Similarity=0.413 Sum_probs=93.1
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcC----------CceeeeecCCCCCCeE-eeEEEEEeeCCCCCeEEEE
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL----------PSKKTTVKHKNLNPEW-NEEYNFTVRDPESQAVELA 329 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~----------~~~kT~v~~~t~nP~w-~e~f~f~v~~~~~~~L~i~ 329 (525)
+..|++++|+||+ ++..|++||||++++.+... +.++|+++++++||+| ||+|.|.+. .++.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4689999999998 67789999999999965432 2579999999999999 999999985 35789999
Q ss_pred EEecCCCCC---CCccEEEEEECcccCCCCC---eeEEEecccccccCCCCCCceeeEEEEEE
Q 009797 330 VYDWEQVGK---HDKMGMNVVPLKELTPEEP---SVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (525)
Q Consensus 330 v~d~~~~~~---d~~lG~~~i~L~~l~~~~~---~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (525)
|||++..++ +++||++.+++.++..+.. ...++++.+.. ..+..+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEEe
Confidence 999865443 7999999999999986642 34455543321 2467889988865
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.3e-16 Score=135.47 Aligned_cols=100 Identities=21% Similarity=0.231 Sum_probs=83.4
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 494 (525)
.|.|+|++|+||+.. +.+||||+++++++..+|+++.+ |.||+|||.|+|.+.++ ..+.+.|+|+|++. .+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~----~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVG----PN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecC----CC
Confidence 488999999999763 57999999999999999999876 69999999999999774 45689999999975 66
Q ss_pred CCccceEEEEEccccccchhhhcccCCCC
Q 009797 495 PKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 495 ~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
+|++||++.|+|+++..+.........||
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~ 104 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVDDRPVPSRWF 104 (150)
T ss_pred CCCeEEEEEEEHHHCcccCCCCccCCceE
Confidence 89999999999999865433334456665
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=132.43 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=88.5
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-------eE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-------EE 448 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-------~~ 448 (525)
.|+|.+++.|.+ ..+.|.|+|++|++|+.. +.+||||++++.+ ..
T Consensus 2 ~G~l~~~l~y~~-------------------------~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~ 56 (133)
T cd04009 2 YGVLTVKAYYRA-------------------------SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPT 56 (133)
T ss_pred ceEEEEEEEEcC-------------------------CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccc
Confidence 699999999975 367899999999999863 5799999999963 35
Q ss_pred EEeeeecCCCCCcccceEEEEecCCC---CCCeEEEEEEEcccCccCCCCCccceEEEEEccccc
Q 009797 449 RKTKHVKKNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~v~~~~---~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
+||+++++|.||+|||.|.|.+.... ....|.|+|||++. ++++++||++.++|.++.
T Consensus 57 ~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~----~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 57 PKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDL----LGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred cccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCC----CCCCcEeEEEEEeHHHCC
Confidence 69999999999999999999987532 23589999999975 678999999999999985
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=130.80 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=87.2
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC---eEEEee
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTK 452 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~---~~~kT~ 452 (525)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++.+.. +++||+
T Consensus 2 ~G~l~~sl~Y~~-------------------------~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTk 56 (124)
T cd08389 2 CGDLDVAFEYDP-------------------------SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTK 56 (124)
T ss_pred CEEEEEEEEECC-------------------------CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecc
Confidence 699999999986 477899999999999863 5789999988743 356999
Q ss_pred eecCCCCCcccceEEEE-ecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 453 HVKKNRDPRWEEEFQFM-LEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 453 v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
++++ .||+|||+|.|. +..... +..|.++|+|++. ++++++||++.|+|.++..+
T Consensus 57 v~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~l~~~ 113 (124)
T cd08389 57 VQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER----MRKERLIGEKVVPLSQLNLE 113 (124)
T ss_pred cccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC----cccCceEEEEEEeccccCCC
Confidence 9888 999999999998 654322 3489999999975 78899999999999998543
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.5e-16 Score=134.85 Aligned_cols=90 Identities=20% Similarity=0.339 Sum_probs=79.5
Q ss_pred eEEEEEEeeecCCCCC-----------------CCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEE
Q 009797 419 LLVVIVHEAQDVEGKH-----------------HTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHV 481 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~~-----------------~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i 481 (525)
.|.|+|++|+||+..+ .+||||++.+++++.||++++++.||+|||.|.|.+..+...+.|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999998632 58999999999999999999999999999999999876555679999
Q ss_pred EEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 482 EVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 482 ~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
+|||++. .++|++||++.+++.++...
T Consensus 81 ~v~D~d~----~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 81 QIRDWDR----VGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred EEEECCC----CCCCCEEEEEEEeHHHhccC
Confidence 9999986 67899999999999987544
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.4e-16 Score=131.39 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=83.3
Q ss_pred eEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCcc
Q 009797 419 LLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVL 498 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~ 498 (525)
.|.|+|++|+||+.. .+||||+++++++..||+++++|.||+|||+|+|.+.+. ....|.++|||++. . .+++
T Consensus 1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~----~-~~~~ 73 (121)
T cd08378 1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDK----A-KDDF 73 (121)
T ss_pred CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCC----C-cCce
Confidence 488999999999987 899999999999888999999999999999999998764 45689999999975 3 6899
Q ss_pred ceEEEEEccccccchh-hhcccCCCCC
Q 009797 499 FQFYFIFYLVHRFKQE-CCRMKNDPFR 524 (525)
Q Consensus 499 lG~v~I~l~~~~~~~~-~~~~~~~~~~ 524 (525)
||++.+++.++...+. .....+.||.
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~ 100 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYR 100 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEE
Confidence 9999999999854432 2233566763
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-16 Score=134.28 Aligned_cols=109 Identities=32% Similarity=0.467 Sum_probs=89.8
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 330 (525)
+....|.|.|+|++|++|+..+..|.+||||++++.+.. ....+|++++++.||+|||+|.|.+... ....|.++|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 345679999999999999999988999999999996532 3357999999999999999999998643 356899999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
||++..+++++||++.+++... ++....|++++
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l 120 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCL 120 (133)
T ss_pred EeCCCCCCccEEEEEEEecCCC--CchHHHHHHHH
Confidence 9999988999999999999863 33344555543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=132.75 Aligned_cols=106 Identities=25% Similarity=0.381 Sum_probs=90.5
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCC-cCCceeeeecCCCCCCeEeeEEEEEeeCC---------------CCCe
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSKKTTVKHKNLNPEWNEEYNFTVRDP---------------ESQA 325 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---------------~~~~ 325 (525)
|+|+|++|++|+.+ ..|.+||||++++++. ....++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 7789999999999842 12347999999999999999999998765 4578
Q ss_pred EEEEEEecCCCCCCCccEEEEEECcccCCCCCeeEEEeccccc
Q 009797 326 VELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNM 368 (525)
Q Consensus 326 L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~ 368 (525)
|.|+|||++..+++++||++.+++.++........|++|.+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998889999999999999998776777888875543
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=131.15 Aligned_cols=92 Identities=24% Similarity=0.389 Sum_probs=82.8
Q ss_pred CCcceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc
Q 009797 415 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 491 (525)
Q Consensus 415 ~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~ 491 (525)
...|.|+|+|++|++|+.. +.+||||+++++++.++|++++++.||.|||.|+|.+.+. ..+.|.|+|||++.
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~--- 87 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDF--- 87 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCC---
Confidence 4679999999999999863 5799999999999999999999999999999999999864 45689999999985
Q ss_pred CCCCCccceEEEEEcccccc
Q 009797 492 LLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 492 ~~~~d~~lG~v~I~l~~~~~ 511 (525)
++.|++||++.+++.++..
T Consensus 88 -~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 88 -FSPDDFLGRTEIRVADILK 106 (136)
T ss_pred -CCCCCeeEEEEEEHHHhcc
Confidence 6789999999999999865
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=132.12 Aligned_cols=103 Identities=17% Similarity=0.304 Sum_probs=86.4
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEe
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKT 451 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~kT 451 (525)
|+|.+++.|.| ..+.|+|+|++|++|+.. +.+||||++++.. .+++|
T Consensus 1 g~l~~~~~y~~-------------------------~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT 55 (134)
T cd08403 1 GELMFSLCYLP-------------------------TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKT 55 (134)
T ss_pred CeEEEEEEEcC-------------------------CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecC
Confidence 78999999987 478899999999999873 5789999999842 24589
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEcccccc
Q 009797 452 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
++++++.||+|||.|.|.+...... ..|.|+|||++. ++++++||++.|++.....
T Consensus 56 ~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~IG~~~l~~~~~~~ 112 (134)
T cd08403 56 SVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR----VGHNELIGVCRVGPNADGQ 112 (134)
T ss_pred CcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCceeEEEEECCCCCCc
Confidence 9999999999999999998653232 379999999986 6789999999999885433
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=127.73 Aligned_cols=100 Identities=22% Similarity=0.294 Sum_probs=83.7
Q ss_pred EEEEEEeeecCCCC----CCCCcEEEEEECCeEEEeeeecCCCCCcc-cceEEEEecCCCC-CCeEEEEEEEcccCccCC
Q 009797 420 LVVIVHEAQDVEGK----HHTNPYARILFRGEERKTKHVKKNRDPRW-EEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 420 L~V~v~~a~~L~~~----~~~dPyv~v~l~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~ 493 (525)
|.|+|++|++|+.. +.+||||+++++++++||++++++.||+| ||.|.|.+..... ++.|.|+|||++. +
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~----~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT----Y 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC----C
Confidence 57999999999753 46899999999998899999999999999 9999999986533 3589999999975 6
Q ss_pred CCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 494 HPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
+++++||++.+++.++... ..-...+.||.
T Consensus 77 ~~~~~iG~~~~~l~~l~~~-~~~~~~~~w~~ 106 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLK-DSVSQISGWFP 106 (110)
T ss_pred CCCCceEEEEEeHHHhccc-CCccccCCeEE
Confidence 7899999999999998542 22334777874
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=133.43 Aligned_cols=108 Identities=29% Similarity=0.438 Sum_probs=88.3
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcC--CcCCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v 330 (525)
+....|.|.|+|++|+||+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 4456789999999999999988889999999999843 23345689999999999999999999753 2356899999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
||++..+++++||++.+++.+. +...+.|.++
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~ 121 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDM 121 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC--CchHHHHHHH
Confidence 9999999999999999999886 3233444444
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=129.60 Aligned_cols=108 Identities=18% Similarity=0.236 Sum_probs=85.9
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcC--CcCCceeeeecCCCC-CCeEeeEEEEEeeCCC-CCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNL-NPEWNEEYNFTVRDPE-SQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~t~-nP~w~e~f~f~v~~~~-~~~L~i~v 330 (525)
+....|.|+|+|++|+||++.+..+.+||||+|++-. .+..++||+++++|+ ||.|||+|.|.+.... .-.|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 4456799999999999999876567789999999853 334568999999996 6999999999997533 34688899
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEe
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 363 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 363 (525)
||++..+++++||++.++.+..... ..++|.+
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~~~-~~~hW~~ 120 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSSSE-AVEQWKD 120 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCCch-hhhhHHH
Confidence 9999889999999999999874322 3344444
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-15 Score=126.44 Aligned_cols=89 Identities=21% Similarity=0.334 Sum_probs=76.3
Q ss_pred ceEEEEEEeeecCCC---C-CCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEccc
Q 009797 418 GLLVVIVHEAQDVEG---K-HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSS 488 (525)
Q Consensus 418 g~L~V~v~~a~~L~~---~-~~~dPyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~i~V~d~~~ 488 (525)
|.|+|+|++|++|+. . +.+||||++++.+ ..++|+++++|.||+|||.|.|.+.... ....|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 689999999999986 2 5789999999854 3569999999999999999999886532 23589999999986
Q ss_pred CccCCCCCccceEEEEEccccc
Q 009797 489 RIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 489 ~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
++.|++||++.+++.++.
T Consensus 81 ----~~~dd~lG~~~i~l~~l~ 98 (111)
T cd04041 81 ----FTADDRLGRVEIDLKELI 98 (111)
T ss_pred ----CCCCCcceEEEEEHHHHh
Confidence 678999999999999874
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=132.06 Aligned_cols=110 Identities=24% Similarity=0.395 Sum_probs=89.8
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc---CCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEE
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVEL 328 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i 328 (525)
.+....+.|.|+|++|+||+..+..|.+||||++++.+.. ..++||++++++.||+|||+|.|.+.. .....|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 3556789999999999999999988999999999996432 234699999999999999999999974 34568999
Q ss_pred EEEecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 329 AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
+|||++..+++++||++.+++.....+ ..++|..+
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~~~-~~~hW~~~ 123 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSGEE-EEEHWNEM 123 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCCch-HHHHHHHH
Confidence 999999999999999999988755432 22344444
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-15 Score=128.35 Aligned_cols=99 Identities=28% Similarity=0.425 Sum_probs=86.3
Q ss_pred EEeccCCcccCcCCCCCcEEEEEEcCCc----CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCC----CC
Q 009797 266 VVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ----VG 337 (525)
Q Consensus 266 v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~----~~ 337 (525)
.++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.++|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4799999999988999999999997653 123699999999999999999998765556789999999997 78
Q ss_pred CCCccEEEEEECcccCCCCCeeEEEec
Q 009797 338 KHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 338 ~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
++++||++.++++++..+.....++.|
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 999999999999999988777777776
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-15 Score=128.86 Aligned_cols=96 Identities=25% Similarity=0.338 Sum_probs=80.5
Q ss_pred ceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
|.|.|+|++|+||+.. +.+||||+++++++.++|+++++ +.||+|||.|.|.+..+ ..+.|.|+|||++. .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDK----R 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC----C
Confidence 6799999999999863 57999999999998889998764 79999999999999874 45689999999975 4
Q ss_pred CCCccceEEEEEccccccchhhhcccCCCC
Q 009797 494 HPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
+ |++||++.+++.++..+. ....||
T Consensus 76 ~-~~~iG~~~~~l~~~~~~~----~~~~w~ 100 (118)
T cd08681 76 K-PDLIGDTEVDLSPALKEG----EFDDWY 100 (118)
T ss_pred C-CcceEEEEEecHHHhhcC----CCCCcE
Confidence 4 899999999999975432 245665
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.9e-15 Score=126.72 Aligned_cols=118 Identities=26% Similarity=0.408 Sum_probs=93.4
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (525)
..|.|+|.+|+ |...+..+.+||||++++++. ..++|++++++.||.|||+|.|.+.. .+.|.++|||++..+.|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 36899999998 555555788999999999865 24799999999999999999999853 57899999999999999
Q ss_pred CccEEEEEECcccCCCCC-----eeEEEecccccccCCCCCCceeeEEEEEE
Q 009797 340 DKMGMNVVPLKELTPEEP-----SVKTLDLLKNMDLNDGQNEKSRGQLVVEF 386 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (525)
++||++.++|.++..... ...++++.+.. ..+....|+|.+.+
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN----KGSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC----CCcceeeeeEEEEe
Confidence 999999999999886532 22355553211 11357789998875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-15 Score=123.46 Aligned_cols=83 Identities=27% Similarity=0.459 Sum_probs=70.4
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEec------
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW------ 333 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~------ 333 (525)
|.|+|++|+||+ +.+||||++.+++.. ....+|+++++|+||+|||+|.|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 689999999996 568999999997532 345799999999999999999999963 67999999998
Q ss_pred -CCCCCCCccEEEEEECcc
Q 009797 334 -EQVGKHDKMGMNVVPLKE 351 (525)
Q Consensus 334 -~~~~~d~~lG~~~i~L~~ 351 (525)
|..++|+++|++.+.|+.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccCcccEEEEEEEEECH
Confidence 456789999888887753
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.1e-16 Score=134.37 Aligned_cols=108 Identities=35% Similarity=0.560 Sum_probs=88.2
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcC--CcCCceeeeecCCCCCCeEeeEEEEEeeCCC--CCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v 330 (525)
+....|.|+|+|++|++|+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.... ...|.++|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4456799999999999999999889999999999953 2334568999999999999999999986432 34799999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
||++..++|++||++.+++.... .....|.++
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~~--~~~~~W~~~ 121 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNATG--AELRHWSDM 121 (136)
T ss_pred EeCCCCCCCceeEEEEECCccCC--hHHHHHHHH
Confidence 99999999999999999998642 233444444
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=127.45 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=84.2
Q ss_pred cceEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCC---CCeEEEEEEEcccCccCC
Q 009797 417 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPT---NDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~---~~~l~i~V~d~~~~~~~~ 493 (525)
...|+|+|++|+||+ .+.+||||++++++++++|++++++.||.|||.|.|.+..+.. +..|.|+|||++. +
T Consensus 3 ~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~----~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS----L 77 (111)
T ss_pred cEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc----c
Confidence 457899999999999 5789999999999999999999999999999999999865421 3589999999975 6
Q ss_pred CCCccceEEEEEccccccchhhhcccCCCC
Q 009797 494 HPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
++|++||++.++|.++..+..+. .-..||
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~-~~~~w~ 106 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHA-FLRKWL 106 (111)
T ss_pred ccCCccEEEEECCccccCCCCCc-ceEEEE
Confidence 77999999999999986554332 334444
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=130.96 Aligned_cols=89 Identities=15% Similarity=0.204 Sum_probs=76.5
Q ss_pred CcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEc
Q 009797 416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSV 486 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~ 486 (525)
..+.|.|+|++|+||+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+..... ...|.|+|||+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 478999999999999873 5789999999964 24599999999999999999999875433 35899999999
Q ss_pred ccCccCCCCCccceEEEEEccc
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLV 508 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~ 508 (525)
+. .+++++||++.+++.+
T Consensus 91 d~----~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 91 DI----GKSNDYIGGLQLGINA 108 (133)
T ss_pred CC----CCCccEEEEEEEecCC
Confidence 75 5789999999999986
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-16 Score=136.00 Aligned_cols=107 Identities=34% Similarity=0.461 Sum_probs=87.8
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEE
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVY 331 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~ 331 (525)
....+.|.|+|++|++|+..+..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred eCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 34578899999999999999988999999999985432 2346899999999999999999998642 3457899999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|++..+++++||++.+++.. .+.....|.++
T Consensus 91 d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l 121 (136)
T cd08404 91 DSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEV 121 (136)
T ss_pred ECCCCCCCccEEEEEECCcC--CCchHHHHHHH
Confidence 99999999999999999998 23344445544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=125.80 Aligned_cols=98 Identities=26% Similarity=0.337 Sum_probs=83.1
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC----CCeEEEEEEecCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQ 335 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~ 335 (525)
-.|+|+|++|++|+ .|.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.++|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 46899999999998 4789999999999754 58999999999999999999986432 4689999999999
Q ss_pred CCCCCccEEEEEECcccCCCCCe---eEEEec
Q 009797 336 VGKHDKMGMNVVPLKELTPEEPS---VKTLDL 364 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~~~~---~~~~~l 364 (525)
.+++++||++.++|+++..+..+ ..|++|
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 88999999999999999766433 345554
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=127.04 Aligned_cols=89 Identities=18% Similarity=0.296 Sum_probs=79.5
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
+++|+|++|+||+.. +.+||||++++++++++|+++++|.||.|||.|+|.+... ..+.|.|+|||++. +++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~----~~~ 75 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDT----GKK 75 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCC----CCC
Confidence 478999999999874 5789999999999999999999999999999999999865 45799999999975 678
Q ss_pred CccceEEEEEccccccc
Q 009797 496 KVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~~ 512 (525)
|++||++.++|.++..+
T Consensus 76 ~~~iG~~~~~l~~l~~~ 92 (116)
T cd08376 76 DEFIGRCEIDLSALPRE 92 (116)
T ss_pred CCeEEEEEEeHHHCCCC
Confidence 99999999999997654
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=126.33 Aligned_cols=102 Identities=25% Similarity=0.391 Sum_probs=85.6
Q ss_pred cCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCC-
Q 009797 277 LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE- 355 (525)
Q Consensus 277 ~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~- 355 (525)
.+|.+||||++++++.. .++|++++++.||.|||+|.|.+.+...+.|.|+|||++.. ++++||++.++|+++...
T Consensus 9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999998643 26899999999999999999999876677899999999988 899999999999998643
Q ss_pred CCeeEEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 356 EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 356 ~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
.....|++|. +...|+|++++.|.|.
T Consensus 86 ~~~~~w~~L~----------~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLS----------GNGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECC----------CCCCCEEEEEEEEecC
Confidence 3346777762 2457999999999883
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-15 Score=130.87 Aligned_cols=98 Identities=27% Similarity=0.477 Sum_probs=81.6
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 330 (525)
+....|.|.|+|++|++|+..+..|.+||||++++.+. ....++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 34456899999999999999998899999999998432 23447899999999999999999998532 234799999
Q ss_pred EecCCCCCCCccEEEEEECccc
Q 009797 331 YDWEQVGKHDKMGMNVVPLKEL 352 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l 352 (525)
||++..+++++||++.+.....
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccC
Confidence 9999999999999998765443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=127.82 Aligned_cols=108 Identities=31% Similarity=0.490 Sum_probs=90.4
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCC---CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~ 329 (525)
+....+.|+|+|++|++|+..+..+.+||||++++.+. .....+|++++++.||.|||+|.|..... ....+.++
T Consensus 10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 34456889999999999999888889999999998532 23457999999999999999999963322 35689999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEe
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 363 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 363 (525)
|||++.. ++++||++.++++++..++.+++++.
T Consensus 90 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 90 VLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 9999987 89999999999999998887777653
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=128.82 Aligned_cols=89 Identities=22% Similarity=0.284 Sum_probs=79.6
Q ss_pred ceEEEEEEeeecCCC-----CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 418 GLLVVIVHEAQDVEG-----KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 418 g~L~V~v~~a~~L~~-----~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
|.|+|+|++|+||+. .+.+||||++++++++++|++++++.||+|||.|+|.+.+. ..+.|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~---- 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDR---- 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCC----
Confidence 689999999999975 35689999999999999999999999999999999999873 45799999999985
Q ss_pred CCCCccceEEEEEcccccc
Q 009797 493 LHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~ 511 (525)
.+.+++||++.+++.++..
T Consensus 76 ~~~~~~lG~~~i~l~~~~~ 94 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFA 94 (128)
T ss_pred CCCCCcceEEEEEHHHhhc
Confidence 6789999999999999853
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-15 Score=130.02 Aligned_cols=88 Identities=25% Similarity=0.341 Sum_probs=77.1
Q ss_pred eEEEEEEeeecCCC---CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCC--CCeEEEEEEEcccCccCC
Q 009797 419 LLVVIVHEAQDVEG---KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPT--NDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 419 ~L~V~v~~a~~L~~---~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~--~~~l~i~V~d~~~~~~~~ 493 (525)
.|+|+|++|+||+. .+.+||||++++++++++|++++++.||+|||.|.|.+.++.. ...|.|+|||++. +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~----~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR----S 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC----C
Confidence 48999999999985 3579999999999999999999999999999999999986422 3589999999875 5
Q ss_pred C-CCccceEEEEEccccc
Q 009797 494 H-PKVLFQFYFIFYLVHR 510 (525)
Q Consensus 494 ~-~d~~lG~v~I~l~~~~ 510 (525)
+ .|++||++.+++.++.
T Consensus 77 ~~~d~~lG~v~i~l~~l~ 94 (127)
T cd04022 77 GRRRSFLGRVRISGTSFV 94 (127)
T ss_pred cCCCCeeeEEEEcHHHcC
Confidence 4 7999999999999986
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-15 Score=131.77 Aligned_cols=108 Identities=33% Similarity=0.527 Sum_probs=87.3
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 330 (525)
+....|.|+|+|++|++|+..+..|.+||||++++... ....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 34567999999999999999998899999999998532 33457899999999999999999998542 235699999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
||++..+++++||++.+++... +.....|.++
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPNAD--GQGREHWNEM 120 (134)
T ss_pred EECCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence 9999999999999999998733 3333444444
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-15 Score=126.97 Aligned_cols=104 Identities=16% Similarity=0.296 Sum_probs=87.9
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECC---eEEEee
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG---EERKTK 452 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~---~~~kT~ 452 (525)
|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.. +.++|+
T Consensus 1 G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~ 55 (123)
T cd08390 1 GRLWFSVQYDL-------------------------EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSK 55 (123)
T ss_pred CEEEEEEEECC-------------------------CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEee
Confidence 88999999976 477899999999999863 4689999999842 456899
Q ss_pred eecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 453 HVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
+++++.||+|||.|.|.+..... ...|.|+|||.+. .+++++||++.++|.++...
T Consensus 56 v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~L~~l~~~ 112 (123)
T cd08390 56 VKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR----FSRHCIIGHVLFPLKDLDLV 112 (123)
T ss_pred eEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc----CCCCcEEEEEEEeccceecC
Confidence 99999999999999999875422 2489999999975 66899999999999998543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-15 Score=132.22 Aligned_cols=99 Identities=23% Similarity=0.250 Sum_probs=80.1
Q ss_pred eEEEEEEeeecCCCC-CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecC-----------C--CC-CCe
Q 009797 419 LLVVIVHEAQDVEGK-HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEE-----------P--PT-NDR 478 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~-~~~dPyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~-----------~--~~-~~~ 478 (525)
.|.|+|++|+||+.. +.+||||++++.+ .+++|+++++|.||+|||.|+|.+.. + .. ...
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 488999999999873 5799999999977 46699999999999999999999951 1 11 237
Q ss_pred EEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 479 LHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 479 l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
|.|.|||++. +++|++||++.|++.++..+. .....||.
T Consensus 81 L~i~V~d~~~----~~~ddfLG~v~i~l~~l~~~~---~~~~~W~~ 119 (148)
T cd04010 81 LRVDLWHASM----GGGDVFLGEVRIPLRGLDLQA---GSHQAWYF 119 (148)
T ss_pred EEEEEEcCCC----CCCCceeEEEEEecccccccC---CcCcceee
Confidence 9999999975 678999999999999986541 23466763
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.5e-15 Score=129.47 Aligned_cols=90 Identities=23% Similarity=0.312 Sum_probs=81.2
Q ss_pred ceEEEEEEeeecCCCC--CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 418 GLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~--~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
|.|.|+|++|+||+.. +.+||||++++++++++|++++++.||+|||.|.|.+.++ ...|.|+|||++. ++.
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~----~~~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDT----FSK 75 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCC----CCC
Confidence 7899999999999763 5789999999999999999999999999999999999875 5689999999986 788
Q ss_pred CccceEEEEEccccccch
Q 009797 496 KVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~~~ 513 (525)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999985543
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=126.07 Aligned_cols=127 Identities=17% Similarity=0.251 Sum_probs=99.8
Q ss_pred CceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCC
Q 009797 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 336 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 336 (525)
.-...|.|.|++|++|+.++ +|||.+.+++... .||+++.++.||.|+|.|.|..... ...+.|.||+.+..
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~ 79 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDK 79 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCc
Confidence 34578999999999999765 8999999998664 6999999999999999999976443 46799999876532
Q ss_pred C----CCCccEEEEEECcccCCCCCeeEEEecccccccCC---CCCCceeeEEEEEEEEEec
Q 009797 337 G----KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND---GQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 337 ~----~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~G~l~l~l~~~p~ 391 (525)
. ++++||.+.||+.++..+...+.|+++........ .......+.|+++++|.+.
T Consensus 80 ~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 80 KKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 2 57899999999999998888889998864321110 0012345799999999985
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-15 Score=126.49 Aligned_cols=88 Identities=28% Similarity=0.408 Sum_probs=78.5
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
+|+|+|++|+||+.. +.+||||++++++...+|+++++|.||+|||.|.|.+... ....|.|+|||++. ++.
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~----~~~ 75 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDL----VSK 75 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCC----CCC
Confidence 489999999999863 4689999999999999999999999999999999999875 35689999999975 678
Q ss_pred CccceEEEEEcccccc
Q 009797 496 KVLFQFYFIFYLVHRF 511 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~ 511 (525)
+++||++.+++.++..
T Consensus 76 ~~~iG~~~~~l~~l~~ 91 (123)
T cd04025 76 NDFLGKVVFSIQTLQQ 91 (123)
T ss_pred CcEeEEEEEEHHHccc
Confidence 9999999999999854
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-15 Score=125.91 Aligned_cols=88 Identities=24% Similarity=0.356 Sum_probs=78.4
Q ss_pred ceEEEEEEeeecCCCC---------CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009797 418 GLLVVIVHEAQDVEGK---------HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 488 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~---------~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~ 488 (525)
|.|.|+|++|+||+.. +.+||||+++++++.++|++++++.||+|||.|+|.+... ..+.|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence 6799999999999853 3689999999999889999999999999999999999764 45799999999975
Q ss_pred CccCCCCCccceEEEEEcccccc
Q 009797 489 RIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 489 ~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
. ++++||++.+++.++..
T Consensus 80 ----~-~~~~iG~~~i~l~~l~~ 97 (121)
T cd08391 80 ----D-KDDFLGRLSIDLGSVEK 97 (121)
T ss_pred ----C-CCCcEEEEEEEHHHhcc
Confidence 4 78999999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=126.06 Aligned_cols=109 Identities=23% Similarity=0.314 Sum_probs=91.2
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCC---CCCCCcEEEEEECC-----eEEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG-----EERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~l~~-----~~~k 450 (525)
+|+|++++.|. .+.|.|+|++|+||+. .+.+||||++.+.+ ..++
T Consensus 1 ~g~~~~~~~~~---------------------------~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~r 53 (131)
T cd04026 1 RGRIYLKISVK---------------------------DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQK 53 (131)
T ss_pred CcEEEEEEEEC---------------------------CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceec
Confidence 58999999874 3789999999999986 35789999999964 4679
Q ss_pred eeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
|++++++.||.|||+|.|.+........|.|+|||++. .+.+++||++.+++.++... ....||
T Consensus 54 T~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~----~~~~~~iG~~~~~l~~l~~~-----~~~~w~ 117 (131)
T cd04026 54 TKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR----TTRNDFMGSLSFGVSELIKM-----PVDGWY 117 (131)
T ss_pred ceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC----CCCcceeEEEEEeHHHhCcC-----ccCceE
Confidence 99999999999999999998865445689999999975 66899999999999998532 455665
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=125.45 Aligned_cols=90 Identities=20% Similarity=0.232 Sum_probs=76.8
Q ss_pred cceEEEEEEeeecCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 417 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
...|+|+|++|+||+..+.+||||++.+++.. .+|++ +++.||.|||.|.|.+..+ ..+.+.|.|+|++. .++
T Consensus 3 ~~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~----~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAK----RSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCC-CcCEEEEEEEECCC----CCC
Confidence 34699999999999998889999999998855 58887 4689999999999987654 33579999999975 678
Q ss_pred CccceEEEEEccccccc
Q 009797 496 KVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~~ 512 (525)
|++||++.|+|.++..+
T Consensus 77 d~~iG~v~i~l~~l~~~ 93 (126)
T cd08400 77 DSEIAEVTVQLSKLQNG 93 (126)
T ss_pred CCeEEEEEEEHhHccCC
Confidence 99999999999998654
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-15 Score=132.42 Aligned_cols=110 Identities=25% Similarity=0.336 Sum_probs=90.1
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v 330 (525)
+....+.|.|+|++|+||+..+ .+.+||||++++.+.. ...++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 3445688999999999999988 7889999999986542 235689999999999999999999863 3356899999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
||++..+++++||++.++......+....+|.++.
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 99999999999999999977666555555565553
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=123.38 Aligned_cols=96 Identities=20% Similarity=0.339 Sum_probs=82.6
Q ss_pred ceEEEEEEeeecCCCC---CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
|.|.|+|++|+||+.. +.+||||+++++++ .++|++++++.||+|||.|.|.+... .+.|.|+|||++. +
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~----~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEK----V 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCC----C
Confidence 6899999999999873 57999999999874 56999999999999999999998764 4689999999986 6
Q ss_pred CCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 494 HPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
++|++||++.+++.++..+ .++.||.
T Consensus 75 ~~d~~IG~~~~~l~~l~~~-----~~~~~~~ 100 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK-----NEDGKYV 100 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC-----CCCceEE
Confidence 7899999999999998544 5577773
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=124.05 Aligned_cols=88 Identities=19% Similarity=0.384 Sum_probs=77.6
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECC-eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 494 (525)
.|+|+|++|++|+.. +.+||||++++++ ..++|++++++.||+|||.|.|.+.+. .+.|.|+|||++. ++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~----~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDR----GL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCC----CC
Confidence 378999999999863 5799999999988 467999999999999999999998763 4689999999986 67
Q ss_pred CCccceEEEEEccccccc
Q 009797 495 PKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 495 ~d~~lG~v~I~l~~~~~~ 512 (525)
+|++||++.+++.++..+
T Consensus 75 ~~~~iG~~~~~l~~l~~~ 92 (121)
T cd04042 75 TDDFMGSAFVDLSTLELN 92 (121)
T ss_pred CCcceEEEEEEHHHcCCC
Confidence 899999999999998644
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=125.71 Aligned_cols=105 Identities=36% Similarity=0.574 Sum_probs=90.4
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCC-CCCeEEEEEEecCCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP-ESQAVELAVYDWEQV 336 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~v~d~~~~ 336 (525)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 889999999999999888889999999999742 22357999999999999999999998753 256899999999988
Q ss_pred CCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 337 GKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 337 ~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
+++++||++.+++.++... ....|+++.
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~ 120 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLL 120 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECc
Confidence 8999999999999999865 566777764
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=122.91 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=75.8
Q ss_pred EEEEEEeeecCCCC----CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009797 420 LVVIVHEAQDVEGK----HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (525)
Q Consensus 420 L~V~v~~a~~L~~~----~~~dPyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 494 (525)
|.|.|.+|+||+.. +.+||||+++++++ ..+|+++++|.||+|||.|+|.+.+. ...|.|.|||++. ++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~----~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDV----LR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCC----CC
Confidence 67899999999874 36899999999876 46999999999999999999999863 3689999999986 77
Q ss_pred CCccceEEEEEcccccc
Q 009797 495 PKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 495 ~d~~lG~v~I~l~~~~~ 511 (525)
+|++||.+.++++++..
T Consensus 76 ~~~~iG~~~i~l~~l~~ 92 (121)
T cd08401 76 RDSVIGKVAIKKEDLHK 92 (121)
T ss_pred CCceEEEEEEEHHHccC
Confidence 89999999999999864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=125.50 Aligned_cols=100 Identities=20% Similarity=0.299 Sum_probs=86.4
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECCe-----EEEe
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-----ERKT 451 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~-----~~kT 451 (525)
|+|.+.++|.+ ..+.|.|+|++|+||+.. +.+||||++++.+. .++|
T Consensus 1 G~i~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T 55 (134)
T cd00276 1 GELLLSLSYLP-------------------------TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKT 55 (134)
T ss_pred CeEEEEEEeeC-------------------------CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecC
Confidence 88999999986 467899999999999863 57899999999653 4589
Q ss_pred eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccc
Q 009797 452 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLV 508 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~ 508 (525)
++++++.||.|||+|.|.+..... ...|.|+|||.+. .+++++||++.+++.+
T Consensus 56 ~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 56 SVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS----VGRNEVIGQVVLGPDS 109 (134)
T ss_pred cceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC----CCCCceeEEEEECCCC
Confidence 999999999999999999876432 3589999999975 5689999999999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=120.99 Aligned_cols=96 Identities=27% Similarity=0.513 Sum_probs=79.8
Q ss_pred EEEEeccCCcccCcCCCCCcEEEEEEcCCc---CCceeeeecCCCCCCeEeeEEEEEeeCCC----CCeEEEEEEecCCC
Q 009797 264 VKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQV 336 (525)
Q Consensus 264 V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~~ 336 (525)
+-.++|++|+..+..|.+||||++++.+.. ...++|+++++++||+|| +|.|.+.... .+.|.++|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 345799999999999999999999987542 234799999999999999 6888764322 57899999999999
Q ss_pred CCCCccEEEEEECcccCCCCCeeE
Q 009797 337 GKHDKMGMNVVPLKELTPEEPSVK 360 (525)
Q Consensus 337 ~~d~~lG~~~i~L~~l~~~~~~~~ 360 (525)
++|++||++.++++++..+...+.
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~~~~~ 106 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSSPLEF 106 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCCCceE
Confidence 999999999999999986654443
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-14 Score=119.79 Aligned_cols=114 Identities=24% Similarity=0.389 Sum_probs=86.4
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC--CCeEEEEEEecCCCCCC
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVYDWEQVGKH 339 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~d~~~~~~d 339 (525)
|+|+|++|++|+.. |.+||||++++++.. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999876 789999999998643 368999888 99999999999997543 34677888888766556
Q ss_pred CccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 340 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
..+|.+ ++..+..+.....|+++.+. . ......|+|++++.|
T Consensus 76 ~~~g~v--~l~~~~~~~~~~~w~~L~~~----~-~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKV--ALSKLDLGQGKDEWFPLTPV----D-PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEE--EecCcCCCCcceeEEECccC----C-CCCCcCceEEEEEEC
Confidence 566654 55555556667788887432 1 124679999999876
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-15 Score=129.74 Aligned_cols=108 Identities=33% Similarity=0.451 Sum_probs=90.5
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCC--CCeEEEEEE
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVY 331 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~ 331 (525)
....+.|.|+|++|++|+..+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+.... ...|.|+||
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 10 LPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 34568999999999999998888899999999997542 23468999999999999999999987542 578999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
|++..+++++||++.+++++ .+.....|+++.
T Consensus 90 d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~ 121 (134)
T cd00276 90 DKDSVGRNEVIGQVVLGPDS--GGEELEHWNEML 121 (134)
T ss_pred ecCCCCCCceeEEEEECCCC--CCcHHHHHHHHH
Confidence 99988899999999999999 444556666654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=123.44 Aligned_cols=88 Identities=19% Similarity=0.329 Sum_probs=76.4
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
.|.|+|++|++|+.. +.+||||++++++ ..++|++++++.||+|||+|+|.+... ..+.|.|+|||++.
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~---- 75 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDY---- 75 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCC----
Confidence 378999999999864 5789999999964 457999999999999999999999865 44689999999975
Q ss_pred CCCCccceEEEEEccccccc
Q 009797 493 LHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~~ 512 (525)
+ +|++||++.+++.++..+
T Consensus 76 ~-~~~~iG~~~~~l~~l~~g 94 (119)
T cd04036 76 V-MDDHLGTVLFDVSKLKLG 94 (119)
T ss_pred C-CCcccEEEEEEHHHCCCC
Confidence 5 799999999999998655
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=121.95 Aligned_cols=91 Identities=20% Similarity=0.312 Sum_probs=80.2
Q ss_pred ceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009797 418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 494 (525)
|.|.|+|++|+||+.. +.+||||++++++...+|++++++.||.|||+|.|.+.+ ..+.+.|+|||++. .+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~----~~ 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD--IHDVLEVTVYDEDK----DK 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC--cCCEEEEEEEECCC----CC
Confidence 6799999999999863 578999999999988999999999999999999999875 34789999999975 57
Q ss_pred CCccceEEEEEccccccchh
Q 009797 495 PKVLFQFYFIFYLVHRFKQE 514 (525)
Q Consensus 495 ~d~~lG~v~I~l~~~~~~~~ 514 (525)
.+++||++.+++.++..+.+
T Consensus 75 ~~~~iG~~~~~l~~~~~~~~ 94 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNGER 94 (119)
T ss_pred CCceeeEEEEEHHHCCCCCc
Confidence 89999999999999865543
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-15 Score=146.38 Aligned_cols=106 Identities=32% Similarity=0.541 Sum_probs=90.4
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCC-CCeEEEEEEecC
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 334 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~ 334 (525)
....|+|+|.+|+||.++|.+|.|||||++.+-++. ..+++|++++.++||+|||+|.|.+.... ...|.++|||||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 456899999999999999999999999999996543 34578999999999999999999997443 568999999999
Q ss_pred CCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 335 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
+.+++||+|..++.+++|.... ..-|+.+
T Consensus 258 rTsRNDFMGslSFgisEl~K~p-~~GWyKl 286 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKAP-VDGWYKL 286 (683)
T ss_pred ccccccccceecccHHHHhhcc-hhhHHHH
Confidence 9999999999999999998663 3334444
|
|
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.1e-14 Score=120.07 Aligned_cols=119 Identities=29% Similarity=0.417 Sum_probs=93.1
Q ss_pred EEEEEEEeccCCcccC--cCCCCCcEEEEEEcCCc---CCceeeeecCCCC-CCeEeeEEEEEeeCCCCCeEEEEEEecC
Q 009797 261 ILHVKVVKAMNLKKKD--LLGASDPYVKLKITEDK---LPSKKTTVKHKNL-NPEWNEEYNFTVRDPESQAVELAVYDWE 334 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~kT~v~~~t~-nP~w~e~f~f~v~~~~~~~L~i~v~d~~ 334 (525)
.|+|+|++|++|+..+ ..+.+||||++++.+.. ....+|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999996432 2457899887765 9999999999998766668999999999
Q ss_pred CCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 335 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
.. ++++||++.++++++..+. .++++... . ......|.|.+.+++
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~---~--~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDS---K--GEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCC---C--CCCCcceeEEEEEEE
Confidence 87 8999999999999996542 33444221 1 112456888888765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-14 Score=122.97 Aligned_cols=99 Identities=24% Similarity=0.326 Sum_probs=82.2
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCe-------EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGE-------ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 488 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~-------~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~ 488 (525)
.|+|+|++|+||+.. +.+||||++++.+. .++|+++++|.||+|||.|.|.+... ...|.++|||++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR--EHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC--CCEEEEEEEECCC
Confidence 488999999999874 57999999999765 46999999999999999999998653 4689999999976
Q ss_pred CccCCCCCccceEEEEEccccccchhh--hcccCCCC
Q 009797 489 RIGLLHPKVLFQFYFIFYLVHRFKQEC--CRMKNDPF 523 (525)
Q Consensus 489 ~~~~~~~d~~lG~v~I~l~~~~~~~~~--~~~~~~~~ 523 (525)
++.+++||++.+++.++..+.+. +.....||
T Consensus 79 ----~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~ 111 (133)
T cd04033 79 ----LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDY 111 (133)
T ss_pred ----CCCCCeeEEEEEEHHHCCCcCccccccccchhe
Confidence 67899999999999998755432 34456666
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-14 Score=121.60 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=75.6
Q ss_pred EEEEEEeeecCCC-CCCCCcEEEEEECC--eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCC
Q 009797 420 LVVIVHEAQDVEG-KHHTNPYARILFRG--EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPK 496 (525)
Q Consensus 420 L~V~v~~a~~L~~-~~~~dPyv~v~l~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d 496 (525)
|.|+|++|+||+. .+.+||||++++++ ++++|+++++|.||+|||.|.|.+.. ..+.|.|+|||++. .++|
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~----~~~~ 74 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGK----KSDS 74 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCC----CCCC
Confidence 5799999999976 35799999999974 56799999999999999999999864 35689999999986 6789
Q ss_pred ccceEEEEEccccccc
Q 009797 497 VLFQFYFIFYLVHRFK 512 (525)
Q Consensus 497 ~~lG~v~I~l~~~~~~ 512 (525)
++||++.+++.++..+
T Consensus 75 ~~lG~~~i~l~~l~~~ 90 (126)
T cd08678 75 KFLGLAIVPFDELRKN 90 (126)
T ss_pred ceEEEEEEeHHHhccC
Confidence 9999999999998654
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-14 Score=122.10 Aligned_cols=88 Identities=23% Similarity=0.308 Sum_probs=77.3
Q ss_pred cceEEEEEEeeecCCCC-------------CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009797 417 GGLLVVIVHEAQDVEGK-------------HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 482 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~-------------~~~dPyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~ 482 (525)
.|.|+|+|++|+||... +.+||||++.++++. .+|+++++|.||.|||.|+|.+.+ ...|.|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEE
Confidence 68999999999999753 358999999999876 599999999999999999999973 3689999
Q ss_pred EEEcccCccCCCCCccceEEEEEcccccc
Q 009797 483 VCSVSSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 483 V~d~~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
|+|++. ++.+++||++.++|.++..
T Consensus 80 v~d~~~----~~~~~~iG~~~i~l~~l~~ 104 (132)
T cd04014 80 VFHDAA----IGPDDFVANCTISFEDLIQ 104 (132)
T ss_pred EEeCCC----CCCCceEEEEEEEhHHhcc
Confidence 999875 6789999999999999865
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=118.29 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=85.7
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~k 450 (525)
.|+|++++.|.+ ..+.|.|+|++|++|+.. +.+||||++++.+ ..++
T Consensus 1 ~G~~~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~r 55 (123)
T cd04035 1 LGTLEFTLLYDP-------------------------ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLR 55 (123)
T ss_pred CcEEEEEEEEeC-------------------------CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCcee
Confidence 489999999986 367899999999999863 5789999999842 3569
Q ss_pred eeeecCCCCCcccceEEEEecCC-C-CCCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEP-P-TNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~-~-~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
|++++++.||+|||.|.|..... . ....+.|+|||++. + .+++||++.+++.++..+
T Consensus 56 T~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~----~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 56 TKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR----F-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred eeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC----c-CCeeEEEEEEEcccCCCC
Confidence 99999999999999999963321 1 23589999999975 5 789999999999997543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.2e-14 Score=119.43 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=76.3
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCeE--EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEE--RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~--~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
.|+|.|++|++|+.. +.+||||+++++++. .||++++++.||+|||+|+|.+..+ ..+.|.|+|||++. +
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~----~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDL----L 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCC----C
Confidence 478999999999863 579999999998875 4788899999999999999998764 45689999999976 6
Q ss_pred CCCccceEEEEEcccccc
Q 009797 494 HPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~ 511 (525)
+.|++||++.+++++..+
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 789999999999998654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.6e-14 Score=121.27 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=77.9
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCC--------CCCeEEEEEEEcc
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP--------TNDRLHVEVCSVS 487 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------~~~~l~i~V~d~~ 487 (525)
.|+|+|++|++|+.. +.+||||++++++++++|+++++|.||+|||.|.|.+.... ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 589999999999863 57999999999999999999999999999999999754321 1247999999997
Q ss_pred cCccCCCCCccceEEEEEc-cccccchhhhcccCCCC
Q 009797 488 SRIGLLHPKVLFQFYFIFY-LVHRFKQECCRMKNDPF 523 (525)
Q Consensus 488 ~~~~~~~~d~~lG~v~I~l-~~~~~~~~~~~~~~~~~ 523 (525)
. .++|++||++.+.. ..+ ...........||
T Consensus 82 ~----~~~d~~iG~~~i~~~~~~-~~~~~~~~~~~W~ 113 (135)
T cd04017 82 S----VGKDEFLGRSVAKPLVKL-DLEEDFPPKLQWF 113 (135)
T ss_pred C----CCCCccceEEEeeeeeec-ccCCCCCCCceEE
Confidence 6 67899999999743 222 2222344555665
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.8e-14 Score=119.39 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=76.4
Q ss_pred cceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 417 GGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
.++++|+|++|++|... +.+||||++.++++..+|++++++.||+|||.|.|.+.+. ...|.|+|||++. +
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~----~ 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNL----L 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCC----C
Confidence 46899999999999863 5799999999999999999999999999999999988764 5689999999864 3
Q ss_pred CCCccceEEEEEcccc
Q 009797 494 HPKVLFQFYFIFYLVH 509 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~ 509 (525)
.|++||++.+++++.
T Consensus 76 -~d~~lG~~~~~l~~~ 90 (126)
T cd04046 76 -CDEFLGQATLSADPN 90 (126)
T ss_pred -CCCceEEEEEecccC
Confidence 489999999999875
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.5e-14 Score=119.59 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=74.4
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEEC-CeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 420 LVVIVHEAQDVEGK---HHTNPYARILFR-GEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 420 L~V~v~~a~~L~~~---~~~dPyv~v~l~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
|+|+|++|++|+.. +.+||||+++++ .+.++|++++++.||+|||.|+|.+.. .+.|.|+|||++. ++.
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~----~~~ 74 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKK----FKK 74 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCC----CCC
Confidence 78999999999864 578999999997 456799999999999999999999965 4699999999975 443
Q ss_pred --CccceEEEEEccccccc
Q 009797 496 --KVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 496 --d~~lG~v~I~l~~~~~~ 512 (525)
|++||++.+++.++...
T Consensus 75 ~~d~~lG~~~i~l~~l~~~ 93 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPL 93 (123)
T ss_pred CCCceEeEEEEEHHHcccc
Confidence 68999999999998543
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-14 Score=140.71 Aligned_cols=105 Identities=23% Similarity=0.348 Sum_probs=90.4
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCC---CCCCCcEEEEEECC-----e
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG-----E 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~l~~-----~ 447 (525)
...+|+|.+.+.. ....|.|+|.+|+||.+ +|.+||||++.+-. .
T Consensus 165 tE~RGrl~l~~~~---------------------------~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~s 217 (683)
T KOG0696|consen 165 TERRGRLYLEAHI---------------------------KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNES 217 (683)
T ss_pred hhhcceEEEEEEe---------------------------cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchh
Confidence 4678999998865 24579999999999976 47899999999843 2
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEcccccc
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
++||++++.++||+|||+|+|.+...+.+..|.|+|||+|+ .++++++|+.+.++.++..
T Consensus 218 KqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr----TsRNDFMGslSFgisEl~K 277 (683)
T KOG0696|consen 218 KQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR----TSRNDFMGSLSFGISELQK 277 (683)
T ss_pred hhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc----cccccccceecccHHHHhh
Confidence 45999999999999999999999877666799999999987 6899999999999999843
|
|
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.6e-14 Score=119.24 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=78.7
Q ss_pred ceEEEEEEeeecCCCC----CCCCcEEEEEECC--eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc
Q 009797 418 GLLVVIVHEAQDVEGK----HHTNPYARILFRG--EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 491 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~ 491 (525)
|.|.|+|++|+||+.. +.+||||++.+++ ..++|++++++.||.|||.|.|.+.. ..+.|.|+|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~--- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFND--- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCC---
Confidence 7899999999999852 3589999999988 67899999999999999999999883 45799999999976
Q ss_pred CCCCCccceEEEEEccccccc
Q 009797 492 LLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 492 ~~~~d~~lG~v~I~l~~~~~~ 512 (525)
.++|++||++.+++.++..+
T Consensus 77 -~~~d~~iG~~~~~l~~l~~~ 96 (124)
T cd04044 77 -KRKDKLIGTAEFDLSSLLQN 96 (124)
T ss_pred -CCCCceeEEEEEEHHHhccC
Confidence 67899999999999998644
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=118.63 Aligned_cols=90 Identities=26% Similarity=0.406 Sum_probs=78.7
Q ss_pred ceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecC-CCCCcccceEEEEecCCC--CCCeEEEEEEEcccCcc
Q 009797 418 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIG 491 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~--~~~~l~i~V~d~~~~~~ 491 (525)
|.|.|+|++|++|+.. +.+||||+++++++.++|++.++ +.||.|||.|.|.+..+. ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~--- 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN--- 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc---
Confidence 6799999999999863 47999999999998889999874 899999999999998752 24589999999975
Q ss_pred CCCCCccceEEEEEcccccc
Q 009797 492 LLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 492 ~~~~d~~lG~v~I~l~~~~~ 511 (525)
++.+++||++.+++.++..
T Consensus 78 -~~~d~~iG~~~i~l~~l~~ 96 (124)
T cd04049 78 -FSDDDFIGEATIHLKGLFE 96 (124)
T ss_pred -CCCCCeEEEEEEEhHHhhh
Confidence 6789999999999999854
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=114.99 Aligned_cols=85 Identities=24% Similarity=0.302 Sum_probs=69.3
Q ss_pred EEEEEEeeecCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc---c
Q 009797 420 LVVIVHEAQDVEGKHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI---G 491 (525)
Q Consensus 420 L~V~v~~a~~L~~~~~~dPyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~---~ 491 (525)
|.|+|++|+||++ .+||||++++.+ ...||+++++|.||+|||+|+|.+.. ...|.+.|||++... +
T Consensus 1 L~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEccccccccc
Confidence 5799999999975 599999999864 24699999999999999999999964 369999999984110 1
Q ss_pred CCCCCccceEEEEEcccc
Q 009797 492 LLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 492 ~~~~d~~lG~v~I~l~~~ 509 (525)
..+.|+.+|+..|.|+--
T Consensus 76 ~~~~d~~~G~g~i~Ld~~ 93 (118)
T cd08686 76 GEGTDAIMGKGQIQLDPQ 93 (118)
T ss_pred ccCcccEEEEEEEEECHH
Confidence 157899999988888653
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.2e-14 Score=110.76 Aligned_cols=85 Identities=35% Similarity=0.630 Sum_probs=76.6
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCc
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (525)
|+|+|++|+||+..+..+.+||||++++.+......+|+++.++.+|.|+|+|.|.+.....+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998755445799999999999999999999877777789999999999988999
Q ss_pred cEEEE
Q 009797 342 MGMNV 346 (525)
Q Consensus 342 lG~~~ 346 (525)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=116.58 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=74.9
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 420 LVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 420 L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
|.|+|++|++|+.. +.+||||++.++++. .||++++++.||+|||.|.|.+... .+.|.|+|||++. +++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~--~~~l~v~v~d~~~----~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG--FHTVSFYVLDEDT----LSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC--CCEEEEEEEECCC----CCC
Confidence 78999999999863 578999999998865 5999999999999999999998753 3689999999986 678
Q ss_pred CccceEEEEEccccc
Q 009797 496 KVLFQFYFIFYLVHR 510 (525)
Q Consensus 496 d~~lG~v~I~l~~~~ 510 (525)
|++||++.++++.+.
T Consensus 76 d~~iG~~~~~~~~~~ 90 (121)
T cd04054 76 DDVIGKVSLTREVIS 90 (121)
T ss_pred CCEEEEEEEcHHHhc
Confidence 999999999998874
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-13 Score=161.04 Aligned_cols=123 Identities=21% Similarity=0.411 Sum_probs=103.2
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC-CCeEEEEEEec
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDW 333 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~ 333 (525)
+....|.|+|+|++|+||. +..|.+||||++.++++.. +||++++++.||+|||+|+|.+.++. .+.|+++|||+
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEec
Confidence 3456899999999999998 3468999999999996543 58999999999999999999998765 46799999999
Q ss_pred CCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeE---EEEEEEEEe
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQ---LVVEFIYKP 390 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~---l~l~l~~~p 390 (525)
|.+++| .||.+++++.++..+.....++++.+ +++..|+ |++++.|.+
T Consensus 2051 d~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFGKS-SLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccCCC-CCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEEecC
Confidence 998555 99999999999998877777887742 2355677 999988864
|
|
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=117.51 Aligned_cols=88 Identities=19% Similarity=0.301 Sum_probs=75.7
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCe---EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGE---ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
.+.|+|.+|++|+.. +.+||||++++++. ..||++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~---- 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSF---- 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCC----
Confidence 689999999999863 57899999998653 46999999999999999999999874 44689999999975
Q ss_pred CCCCccceEEEEEcccccc
Q 009797 493 LHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~ 511 (525)
.+.+++||++.++|.++..
T Consensus 77 ~~~~~~iG~~~i~l~~~~~ 95 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRF 95 (126)
T ss_pred CCCCceEEEEEEecCHHHc
Confidence 5689999999999987543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-13 Score=116.92 Aligned_cols=90 Identities=22% Similarity=0.366 Sum_probs=75.9
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc----
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG---- 491 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~---- 491 (525)
.|.|+|++|++|+.. +.+||||+++++++.++|++++++.||.|||.|.|.+..+ .+.|.|+|||++....
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCcccccc
Confidence 689999999999864 4789999999998888999999999999999999998653 4689999999974200
Q ss_pred --C-CCCCccceEEEEEccccc
Q 009797 492 --L-LHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 492 --~-~~~d~~lG~v~I~l~~~~ 510 (525)
+ .+.+++||++.+++.++.
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~ 101 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLS 101 (127)
T ss_pred eeccccCCCcceEEEEEhHHcc
Confidence 0 146999999999999874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-13 Score=117.19 Aligned_cols=85 Identities=21% Similarity=0.368 Sum_probs=74.8
Q ss_pred EEeeecCCC-CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCccceE
Q 009797 424 VHEAQDVEG-KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKVLFQF 501 (525)
Q Consensus 424 v~~a~~L~~-~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~i~V~d~~~~~~~~~~d~~lG~ 501 (525)
|++|+||+. .+.+||||++++++.+++|++++++.||+|||.|.|.+..+. ..+.|.|+|||++. .++|++||+
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~----~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK----VGRNRLIGS 77 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC----CCCCceEEE
Confidence 688999987 467999999999999999999999999999999999997642 34699999999975 678999999
Q ss_pred EEEEccccccc
Q 009797 502 YFIFYLVHRFK 512 (525)
Q Consensus 502 v~I~l~~~~~~ 512 (525)
+.+++.++..+
T Consensus 78 ~~~~l~~l~~~ 88 (127)
T cd08373 78 ATVSLQDLVSE 88 (127)
T ss_pred EEEEhhHcccC
Confidence 99999988643
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-13 Score=121.35 Aligned_cols=89 Identities=19% Similarity=0.288 Sum_probs=74.5
Q ss_pred cceEEEEEEeeecCCCC---------------------------------CCCCcEEEEEECCeE-EEeeeecCCCCCcc
Q 009797 417 GGLLVVIVHEAQDVEGK---------------------------------HHTNPYARILFRGEE-RKTKHVKKNRDPRW 462 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~---------------------------------~~~dPyv~v~l~~~~-~kT~v~~~t~nP~w 462 (525)
-|.|.|+|++|++|+.+ +.+||||++.+++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 47788888888888642 347999999999866 49999999999999
Q ss_pred cceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 463 EEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 463 ne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
||.|+|.+... .+.|.|+|+|++. + .+++||.+.++++++..+
T Consensus 86 nE~F~~~~~~~--~~~l~~~V~d~d~----~-~~~~IG~~~i~l~~l~~g 128 (158)
T cd04015 86 NESFHIYCAHY--ASHVEFTVKDNDV----V-GAQLIGRAYIPVEDLLSG 128 (158)
T ss_pred ceEEEEEccCC--CCEEEEEEEeCCC----c-CCcEEEEEEEEhHHccCC
Confidence 99999998754 3689999999974 4 368999999999998643
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-13 Score=118.98 Aligned_cols=87 Identities=28% Similarity=0.342 Sum_probs=75.8
Q ss_pred EEEEEEeeecCCCC--CCCCcEEEEEEC----CeEEEeeeecCCCCCcccceEEEEecCCC--------------CCCeE
Q 009797 420 LVVIVHEAQDVEGK--HHTNPYARILFR----GEERKTKHVKKNRDPRWEEEFQFMLEEPP--------------TNDRL 479 (525)
Q Consensus 420 L~V~v~~a~~L~~~--~~~dPyv~v~l~----~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------------~~~~l 479 (525)
|.|.|++|+||+.. +.+||||+++++ +..++|++++++.||.|||.|.|.+.... ....|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 57899999999854 679999999998 66789999999999999999999987641 23489
Q ss_pred EEEEEEcccCccCCCCCccceEEEEEccccc
Q 009797 480 HVEVCSVSSRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 480 ~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
.|+|||++. ++++++||++.+++.++.
T Consensus 81 ~i~V~d~~~----~~~~~~IG~~~i~l~~l~ 107 (137)
T cd08675 81 RVELWHASM----VSGDDFLGEVRIPLQGLQ 107 (137)
T ss_pred EEEEEcCCc----CcCCcEEEEEEEehhhcc
Confidence 999999985 678999999999999975
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.9e-13 Score=118.47 Aligned_cols=96 Identities=21% Similarity=0.264 Sum_probs=80.6
Q ss_pred CCcceEEEEEEeeecCCC---CCCCCcEEEEEECCe-----------------------------EEEeeeecCCCCCcc
Q 009797 415 AGGGLLVVIVHEAQDVEG---KHHTNPYARILFRGE-----------------------------ERKTKHVKKNRDPRW 462 (525)
Q Consensus 415 ~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~l~~~-----------------------------~~kT~v~~~t~nP~w 462 (525)
...+.|.|+|++|+||.. .+.+||||++.+.+. .++|+++++|.||+|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 468999999999999976 357999999998632 258999999999999
Q ss_pred cceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 463 EEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 463 ne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
||.|.|.+... ....|.|+|||++ +++||++.+++.++. + .....||.
T Consensus 105 nE~F~f~v~~~-~~~~L~i~V~D~d--------d~~IG~v~i~l~~l~-~----~~~d~W~~ 152 (153)
T cd08676 105 NETFRFEVEDV-SNDQLHLDIWDHD--------DDFLGCVNIPLKDLP-S----CGLDSWFK 152 (153)
T ss_pred ccEEEEEeccC-CCCEEEEEEEecC--------CCeEEEEEEEHHHhC-C----CCCCCeEe
Confidence 99999999764 3568999999994 789999999999986 2 13588874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-13 Score=115.35 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=78.1
Q ss_pred eEEEEEEeeecCCCC---CCCCcEEEEEECC-eEEEeeeec-CCCCCcccceEEEEecCCC---CCCeEEEEEEEcccCc
Q 009797 419 LLVVIVHEAQDVEGK---HHTNPYARILFRG-EERKTKHVK-KNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSRI 490 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-~~~kT~v~~-~t~nP~wne~f~f~v~~~~---~~~~l~i~V~d~~~~~ 490 (525)
.|.|+|++|++|+.. +.+||||++++++ ++++|++.+ ++.||.|||.|.|.+.... ....|.|+|+|++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-- 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-- 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC--
Confidence 378999999999863 5799999999988 778999975 5899999999999998752 15689999999975
Q ss_pred cCCCCCccceEEEEEccccccch
Q 009797 491 GLLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 491 ~~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
++.|++||++.+++.++..+.
T Consensus 79 --~~~~~~lG~~~i~l~~l~~~~ 99 (125)
T cd04051 79 --SLGDKLIGEVRVPLKDLLDGA 99 (125)
T ss_pred --CCCCCcEEEEEEEHHHhhccc
Confidence 567999999999999986654
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=111.69 Aligned_cols=87 Identities=23% Similarity=0.355 Sum_probs=74.8
Q ss_pred eEEEEEEeeecCCC--CCCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 419 LLVVIVHEAQDVEG--KHHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 419 ~L~V~v~~a~~L~~--~~~~dPyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
.|.|+|.+|+.+.. .+.+||||+++++++ .++|++++++.||+|||.|.|.+.. .+.|.|+|||++. .+.
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~----~~~ 75 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHT----LKA 75 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCC----CCC
Confidence 58999999984443 246999999999988 7899999999999999999999864 3689999999986 678
Q ss_pred CccceEEEEEccccccc
Q 009797 496 KVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~~ 512 (525)
+++||++.++|.++...
T Consensus 76 ~~~iG~~~i~l~~l~~~ 92 (125)
T cd04021 76 DVLLGEASLDLSDILKN 92 (125)
T ss_pred CcEEEEEEEEHHHhHhh
Confidence 99999999999997543
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=110.24 Aligned_cols=88 Identities=25% Similarity=0.342 Sum_probs=76.0
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 420 LVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 420 L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
|+|+|++|++|+.. +.+||||+++++++. ++|+++.++.||.|||.|.|.+... ..+.+.|+|||++. .++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~----~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDR----GGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCC----CCC
Confidence 57899999999863 468999999997744 6999999999999999999999864 45689999999975 678
Q ss_pred CccceEEEEEccccccc
Q 009797 496 KVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~~ 512 (525)
+++||++.+++.++..+
T Consensus 76 ~~~iG~~~~~l~~l~~~ 92 (115)
T cd04040 76 DDLLGSAYIDLSDLEPE 92 (115)
T ss_pred CCceEEEEEEHHHcCCC
Confidence 99999999999997543
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-12 Score=111.82 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=72.5
Q ss_pred EEEEEEeeecCCCC--CCCCcEEEEEECC-------------eEEEeeeecCCCCCcc-cceEEEEecCCCCCCeEEEEE
Q 009797 420 LVVIVHEAQDVEGK--HHTNPYARILFRG-------------EERKTKHVKKNRDPRW-EEEFQFMLEEPPTNDRLHVEV 483 (525)
Q Consensus 420 L~V~v~~a~~L~~~--~~~dPyv~v~l~~-------------~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~i~V 483 (525)
..|++++|+||+.. +.+||||++++.+ +.++|++++++.||+| ||.|.|.+.. ++.|.++|
T Consensus 3 ~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v~V 79 (137)
T cd08691 3 FSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEIEV 79 (137)
T ss_pred EEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEEEE
Confidence 57889999999842 6899999999953 3579999999999999 9999999863 36899999
Q ss_pred EEcccCccCCCCCccceEEEEEccccccc
Q 009797 484 CSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 484 ~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
||++.. +....+++||++.|++.++..+
T Consensus 80 ~D~~~~-~~~~~~d~lG~~~i~l~~l~~~ 107 (137)
T cd08691 80 KDKFAK-SRPIIRRFLGKLSIPVQRLLER 107 (137)
T ss_pred EecCCC-CCccCCceEEEEEEEHHHhccc
Confidence 998642 1011379999999999998544
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-12 Score=113.32 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=69.9
Q ss_pred EEEEEEeeec--CCC---CCCCCcEEEEEE--C---CeEEEeeeecCCCCCcccceEEEEecCCC-------CCCeEEEE
Q 009797 420 LVVIVHEAQD--VEG---KHHTNPYARILF--R---GEERKTKHVKKNRDPRWEEEFQFMLEEPP-------TNDRLHVE 482 (525)
Q Consensus 420 L~V~v~~a~~--L~~---~~~~dPyv~v~l--~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~-------~~~~l~i~ 482 (525)
..++|..|++ |++ .+.+||||++++ . .++.||+++++|.||+|||+|.|.+.... ....|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3456666666 555 247999999997 2 24679999999999999999999996531 13479999
Q ss_pred EEEcccCccCCCCCccceEEEEEccccccc
Q 009797 483 VCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 483 V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
|||++. ++++|++||++.++|..+..+
T Consensus 84 V~d~~~---f~~~D~~iG~~~i~L~~l~~~ 110 (155)
T cd08690 84 VYHKGG---FLRSDKLLGTAQVKLEPLETK 110 (155)
T ss_pred EEeCCC---cccCCCeeEEEEEEccccccc
Confidence 999974 135799999999999997433
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-12 Score=109.11 Aligned_cols=85 Identities=25% Similarity=0.293 Sum_probs=70.2
Q ss_pred EEEEEEeeecCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCc
Q 009797 420 LVVIVHEAQDVEGKHHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKV 497 (525)
Q Consensus 420 L~V~v~~a~~L~~~~~~dPyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~ 497 (525)
|.|+|++|+||+..+.+||||++++++++ ++|+++++ .||.|||+|.|.+...... ..|.+.++|++. .+.+.
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~----~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS----KDRDI 76 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc----CCCee
Confidence 78999999999988889999999999864 69999999 9999999999999864322 367888888864 45678
Q ss_pred cceEEEEEcccc
Q 009797 498 LFQFYFIFYLVH 509 (525)
Q Consensus 498 ~lG~v~I~l~~~ 509 (525)
.+|.+.|+....
T Consensus 77 ~~g~v~l~~~~~ 88 (117)
T cd08383 77 VIGKVALSKLDL 88 (117)
T ss_pred EEEEEEecCcCC
Confidence 888888776654
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-12 Score=111.15 Aligned_cols=99 Identities=16% Similarity=0.115 Sum_probs=79.3
Q ss_pred cceEEEEEEeeecCCCCCCCCcEEEEEECCeEE-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 417 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
...|.|.|.+|++|+.+ .+|||.+.+++... ||+++.++.||.|+|.|.|.+..+ ...+.|.|+..+...+-..+
T Consensus 10 ~~sL~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP--VSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc--ccEEEEEEEEccCccccccC
Confidence 34689999999999986 48999999999886 999999999999999999986653 35799999866532211236
Q ss_pred CccceEEEEEccccccchhhhcccCCCC
Q 009797 496 KVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 496 d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
+.+||.+.|++.++.. ......||
T Consensus 86 ~~~IG~V~Ip~~~l~~----~~~ve~Wf 109 (146)
T cd04013 86 SQLIGTVNIPVTDVSS----RQFVEKWY 109 (146)
T ss_pred CcEEEEEEEEHHHhcC----CCcccEEE
Confidence 8999999999999863 45566666
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-12 Score=109.95 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=71.7
Q ss_pred EEEeeecCCCC---CCCCcEEEEEECCeE-------EEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 423 IVHEAQDVEGK---HHTNPYARILFRGEE-------RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 423 ~v~~a~~L~~~---~~~dPyv~v~l~~~~-------~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
..++|++|+.. +.+||||++++.+.. ++|++++++.||+|||+|.|.+... ..+.|.|+|||++...+.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~~ 83 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSKD 83 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcCC
Confidence 34889999863 578999999997753 6999999999999999999987643 346899999999751001
Q ss_pred CCCCccceEEEEEccccccc
Q 009797 493 LHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~~ 512 (525)
++++++||++.+++.++..+
T Consensus 84 ~~~~d~iG~~~i~l~~l~~~ 103 (120)
T cd04048 84 LSDHDFLGEAECTLGEIVSS 103 (120)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 46899999999999998533
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=132.32 Aligned_cols=124 Identities=25% Similarity=0.451 Sum_probs=101.7
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecC
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE 334 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~ 334 (525)
..++...++++|++|.+|..+|..|++||||.+.++..+ ++|+++...+||+|||.|+|..++. ++.++++|||.|
T Consensus 290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded 365 (1283)
T KOG1011|consen 290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDED 365 (1283)
T ss_pred ccccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCc
Confidence 446788999999999999999999999999999998765 5899999999999999999999874 788999999987
Q ss_pred CC-----------CCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 335 QV-----------GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 335 ~~-----------~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
.. ..|||+|+..|.++.+..+...|+.++ +.. .++..+|.|++.+...
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtlsgemdvwynle--krt-----dksavsgairlhisve 424 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLE--KRT-----DKSAVSGAIRLHISVE 424 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEecccchhhhcchh--hcc-----chhhccceEEEEEEEE
Confidence 42 468999999999999987765555543 222 2356788776665543
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-12 Score=130.26 Aligned_cols=108 Identities=22% Similarity=0.298 Sum_probs=93.0
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECCe---EE
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE---ER 449 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~---~~ 449 (525)
....|+|.+++.|.. ....|.|+|.+|+||+.. +.+||||++++... +.
T Consensus 150 ~~~~G~l~fsl~Yd~-------------------------~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~ 204 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDF-------------------------ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKF 204 (421)
T ss_pred ceeeeeEEEEEEecc-------------------------cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcc
Confidence 567899999999975 577899999999999974 46899999999764 35
Q ss_pred EeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
+|++.++|+||+|||+|.|.|..... ...|.+.|||.|. |+++++||.+.++|......
T Consensus 205 kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr----fsr~~~iGev~~~l~~~~~~ 264 (421)
T KOG1028|consen 205 KTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR----FSRHDFIGEVILPLGEVDLL 264 (421)
T ss_pred eeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC----cccccEEEEEEecCcccccc
Confidence 99999999999999999999775433 3599999999987 99999999999998876444
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.4e-12 Score=101.33 Aligned_cols=79 Identities=33% Similarity=0.550 Sum_probs=69.3
Q ss_pred EEEEEEeeecCCC---CCCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 420 LVVIVHEAQDVEG---KHHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 420 L~V~v~~a~~L~~---~~~~dPyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
|.|+|++|+||+. .+.+||||++++++ ..++|++++++.+|.|||.|.|.+..+. .+.|.|+|||.+. .
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~~~V~~~~~----~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD-LDSLSFEVWDKDS----F 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC-GTEEEEEEEEETS----S
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc-ccceEEEEEECCC----C
Confidence 6899999999997 35789999999988 6789999999999999999999987753 3569999999986 6
Q ss_pred CCCccceEEE
Q 009797 494 HPKVLFQFYF 503 (525)
Q Consensus 494 ~~d~~lG~v~ 503 (525)
+.|++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 6799999873
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-12 Score=151.35 Aligned_cols=91 Identities=22% Similarity=0.394 Sum_probs=82.0
Q ss_pred CcceEEEEEEeeecCCCC-CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 416 GGGLLVVIVHEAQDVEGK-HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~-~~~dPyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
-.|.|.|+|++|+||..+ +.+||||++.++++ ++||++++++.||+|||.|+|.+.+++.++.|+|+|||+|. +
T Consensus 1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~----f 2053 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT----F 2053 (2102)
T ss_pred CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc----c
Confidence 568999999999999975 78999999999965 78999999999999999999999998777899999999985 6
Q ss_pred CCCccceEEEEEcccccc
Q 009797 494 HPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~ 511 (525)
.++.||++.|++.+...
T Consensus 2054 -~kd~~G~~~i~l~~vv~ 2070 (2102)
T PLN03200 2054 -GKSSLGKVTIQIDRVVM 2070 (2102)
T ss_pred -CCCCCceEEEEHHHHhc
Confidence 45699999999999753
|
|
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.4e-12 Score=108.08 Aligned_cols=92 Identities=22% Similarity=0.250 Sum_probs=76.5
Q ss_pred eEEEEEEeeecCCC-----CCCCCcEEEEEEC------CeEEEeeeecCCC-CCcccceEEEEecCCCCCCeEEEEEEEc
Q 009797 419 LLVVIVHEAQDVEG-----KHHTNPYARILFR------GEERKTKHVKKNR-DPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 419 ~L~V~v~~a~~L~~-----~~~~dPyv~v~l~------~~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
.|+|+|++|+||+. .+.+||||++++. ..+.+|++++++. ||.|||+|.|.+..+ ....|.++|+|.
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEEEeC
Confidence 58999999999975 3468999999994 3457999988776 999999999999865 335799999999
Q ss_pred ccCccCCCCCccceEEEEEccccccchhhh
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLVHRFKQECC 516 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~ 516 (525)
+. . ++++||++.+++.++..+.+..
T Consensus 82 ~~----~-~~~~iG~~~~~l~~l~~g~~~~ 106 (128)
T cd00275 82 DS----G-DDDFLGQACLPLDSLRQGYRHV 106 (128)
T ss_pred CC----C-CCcEeEEEEEEhHHhcCceEEE
Confidence 75 4 7999999999999987665443
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-12 Score=106.14 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=69.1
Q ss_pred EEEEeeecCCCC---CCCCcEEEEEECCe------EEEeeeecCCCCCcccceEEEEecCC---CCCCeEEEEEEEcccC
Q 009797 422 VIVHEAQDVEGK---HHTNPYARILFRGE------ERKTKHVKKNRDPRWEEEFQFMLEEP---PTNDRLHVEVCSVSSR 489 (525)
Q Consensus 422 V~v~~a~~L~~~---~~~dPyv~v~l~~~------~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~~l~i~V~d~~~~ 489 (525)
+..++|++|+.. +.+||||++++.++ .++|++++++.||+|| .|.|.+... .....|.|+|||++.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 345799999864 57999999998654 3699999999999999 688876432 124689999999986
Q ss_pred ccCCCCCccceEEEEEccccc
Q 009797 490 IGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 490 ~~~~~~d~~lG~v~I~l~~~~ 510 (525)
+++|++||++.+++.++.
T Consensus 82 ---~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 82 ---SGKHDLIGEFETTLDELL 99 (110)
T ss_pred ---CCCCcEEEEEEEEHHHHh
Confidence 778999999999999986
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=105.46 Aligned_cols=95 Identities=24% Similarity=0.282 Sum_probs=80.3
Q ss_pred EEEEEEeccCCcccC--cCC--CCCcEEEEEEcCCcCCceeeeecCCCCC--CeEeeEEEEEeeCC--------------
Q 009797 262 LHVKVVKAMNLKKKD--LLG--ASDPYVKLKITEDKLPSKKTTVKHKNLN--PEWNEEYNFTVRDP-------------- 321 (525)
Q Consensus 262 L~V~v~~A~~L~~~d--~~g--~~dpyv~v~~~~~~~~~~kT~v~~~t~n--P~w~e~f~f~v~~~-------------- 321 (525)
|+|.|.+|++++..+ ..| .+||||++.+.+....+++|.+..+++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966543 356 4999999999886555679999999999 99999999887641
Q ss_pred ---------CCCeEEEEEEecCCCCCCCccEEEEEECcccCCCC
Q 009797 322 ---------ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 322 ---------~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
....|.++|||+|.+++|++||+++++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 24679999999999999999999999999887653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-12 Score=106.50 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=63.5
Q ss_pred CCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEcccccc
Q 009797 434 HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 434 ~~~dPyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
|.+||||+++++++ .++|++++++.||+|||.|+|.+.+. ..+.|.|+|+|++. + +|++||++.++|.++..
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~-~d~~iG~~~v~L~~l~~ 83 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRD----R-HDPVLGSVSISLNDLID 83 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCC----C-CCCeEEEEEecHHHHHh
Confidence 57899999999886 46999999999999999999999875 45689999999975 6 79999999999998743
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-11 Score=99.58 Aligned_cols=96 Identities=43% Similarity=0.697 Sum_probs=82.4
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 340 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 340 (525)
.|.|+|++|++|......+..+|||++++.+......+|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 36899999999998776568899999999865222368999999999999999999998765789999999999877899
Q ss_pred ccEEEEEECcccCCCC
Q 009797 341 KMGMNVVPLKELTPEE 356 (525)
Q Consensus 341 ~lG~~~i~L~~l~~~~ 356 (525)
++|.+.+++.++..+.
T Consensus 81 ~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 81 FIGQVTIPLSDLLLGG 96 (101)
T ss_pred eeEEEEEEHHHcccCc
Confidence 9999999999987664
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-11 Score=103.14 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=76.1
Q ss_pred EEEEEEeeecCCC-----CC--CCCcEEEEEECC---eEEEeeeecCCCC--CcccceEEEEecCCCC------------
Q 009797 420 LVVIVHEAQDVEG-----KH--HTNPYARILFRG---EERKTKHVKKNRD--PRWEEEFQFMLEEPPT------------ 475 (525)
Q Consensus 420 L~V~v~~a~~L~~-----~~--~~dPyv~v~l~~---~~~kT~v~~~t~n--P~wne~f~f~v~~~~~------------ 475 (525)
|+|.|.+|+|++. .+ .+||||++.+.+ ++++|.+.+++.| |+||++|.|.+..++.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7899999999653 23 499999999976 3569999999999 9999999999876322
Q ss_pred ----------CCeEEEEEEEcccCccCCCCCccceEEEEEccccccch
Q 009797 476 ----------NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 476 ----------~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
...|.++|||.|. +++|++||.+.++|..++.+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~----~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK----FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc----cCCCCcceEEEEEhhhccccc
Confidence 2489999999986 889999999999999987664
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-11 Score=96.42 Aligned_cols=99 Identities=41% Similarity=0.637 Sum_probs=82.8
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCc
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 341 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 341 (525)
|.|+|++|++|......+..+|||.+.+.+. ...+|+++.++.||.|+|.|.|.+.......+.++||+.+..+.+.+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 4789999999988766778999999999872 23689999999999999999999976456789999999998878899
Q ss_pred cEEEEEECcccC-CCCCeeEEE
Q 009797 342 MGMNVVPLKELT-PEEPSVKTL 362 (525)
Q Consensus 342 lG~~~i~L~~l~-~~~~~~~~~ 362 (525)
+|.+.+++.++. .......|+
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~ 100 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWL 100 (102)
T ss_pred eEEEEEeHHHhhhcCCcCccee
Confidence 999999999998 443444443
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.6e-11 Score=126.67 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=64.1
Q ss_pred CCCCcEEEEEECCeEE-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 434 HHTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 434 ~~~dPyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
+.+||||+|.+++++. ||++++++.||+|||.|.|.|.++ ...|.|+|+|++. ++ ++.||.+.|++.++..+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~----~g-aD~IG~a~IPL~~L~~G 147 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDV----FG-AQIIGTAKIPVRDIASG 147 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCc----cC-CceeEEEEEEHHHcCCC
Confidence 5689999999988654 999999999999999999999985 3589999999875 55 68999999999998776
Q ss_pred h
Q 009797 513 Q 513 (525)
Q Consensus 513 ~ 513 (525)
+
T Consensus 148 e 148 (868)
T PLN03008 148 E 148 (868)
T ss_pred C
Confidence 4
|
|
| >PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-10 Score=92.55 Aligned_cols=85 Identities=18% Similarity=0.359 Sum_probs=73.3
Q ss_pred HHHHHHHhh-hHH-HHHHHHHHHHHHHHHHh-cCCceeeeeEEEeEEeCCCCCCeEeeeEEEec-CCCeEEEEeeeeEeC
Q 009797 75 NKFLELMWP-YLD-KAICKTAKNIAKPIIAE-QIPKYKIESVEFETLTLGTLPPTFQGMKVYVT-DEKELIMEPCLKWAA 150 (525)
Q Consensus 75 N~~l~~~W~-~~~-~~~~~~i~~~~~~~l~~-~~p~~~i~~i~~~~~~lG~~~P~i~~v~~~~~-~~~~~~le~~~~~~~ 150 (525)
|.+++|++- +.+ +.+.+.+++.++..|++ .+|+| +++|++++++||+.||.|+++++.+. .++++.+|+|+.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 678888655 444 68899999999999998 46998 99999999999999999999999864 455699999999999
Q ss_pred CCcEEEEEEE
Q 009797 151 NPNVTIGVKA 160 (525)
Q Consensus 151 ~~~i~l~~~~ 160 (525)
+..++++.++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9998888764
|
These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria []. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-10 Score=117.76 Aligned_cols=98 Identities=30% Similarity=0.456 Sum_probs=82.5
Q ss_pred eeEEEEEEEeccCCccc-----CcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEE
Q 009797 259 VGILHVKVVKAMNLKKK-----DLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY 331 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~-----d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~ 331 (525)
...|+|+|++|.+++.. +.....||||+|.+.|-. ...++|++..++.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46899999999987511 223457999999997632 23457888889999999999999999988888999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCC
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
|+|..++++++|++.+|+..+..+-
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc
Confidence 9998888999999999999999885
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-10 Score=124.44 Aligned_cols=92 Identities=25% Similarity=0.435 Sum_probs=81.9
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 339 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d 339 (525)
-.++|.+++|-+|.+.|.+|.+|||+++.+++... ..++..+.+|+||+|.+.|++....+....+.++|||+|..+.|
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence 35679999999999999999999999999997653 24677889999999999999998877778899999999999999
Q ss_pred CccEEEEEECccc
Q 009797 340 DKMGMNVVPLKEL 352 (525)
Q Consensus 340 ~~lG~~~i~L~~l 352 (525)
+.+|+..++|+.-
T Consensus 692 ~~iget~iDLEnR 704 (1105)
T KOG1326|consen 692 EKIGETTIDLENR 704 (1105)
T ss_pred chhhceehhhhhc
Confidence 9999999998753
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-10 Score=91.61 Aligned_cols=90 Identities=24% Similarity=0.403 Sum_probs=77.2
Q ss_pred EEEEEEeeecCCCC---CCCCcEEEEEECCe---EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 420 LVVIVHEAQDVEGK---HHTNPYARILFRGE---ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 420 L~V~v~~a~~L~~~---~~~dPyv~v~l~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
+.+.|++|++|... +..+|||++++.+. ..+|+++.++.||.|||.|.|.+.... ...|.|+|||++. .
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~----~ 76 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDR----F 76 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCC----c
Confidence 67899999999874 36899999999875 689999999999999999999998753 5799999999975 4
Q ss_pred CCCccceEEEEEccccccchh
Q 009797 494 HPKVLFQFYFIFYLVHRFKQE 514 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~~~~ 514 (525)
+.+..+|.+.+++.++..+.+
T Consensus 77 ~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred cCCceeEEEEEEHHHcccCcc
Confidence 568999999999998865543
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-09 Score=117.66 Aligned_cols=129 Identities=18% Similarity=0.329 Sum_probs=103.5
Q ss_pred ceeEEEEEEEeccCCcccC------------------cCCCCCcEEEEEEcCCcCCceeeeecCCC-CCCeEeeEEEEEe
Q 009797 258 PVGILHVKVVKAMNLKKKD------------------LLGASDPYVKLKITEDKLPSKKTTVKHKN-LNPEWNEEYNFTV 318 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~kT~v~~~t-~nP~w~e~f~f~v 318 (525)
-.|.|.|+|.+|++|++.+ ..+.+||||.|.+++.+. .||+++.+. .||.|+|+|.+.+
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEee
Confidence 3699999999999998631 125689999999997664 799999885 6999999999999
Q ss_pred eCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCCC
Q 009797 319 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEE 394 (525)
Q Consensus 319 ~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (525)
... ...+.|+|.|.+.++. .+||.+.+|..++..++..+.|+++...- .+..+....|++++.|.|...+
T Consensus 84 ah~-~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 84 AHM-ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred ccC-cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEEEEEcccC
Confidence 765 4689999999998764 59999999999999998888888875321 1112233489999999997665
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-09 Score=113.31 Aligned_cols=103 Identities=29% Similarity=0.435 Sum_probs=83.9
Q ss_pred eeEEEEEEEeccCCccc------CcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEE
Q 009797 259 VGILHVKVVKAMNLKKK------DLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAV 330 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~------d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v 330 (525)
...|.|+|++|.+++.. +.....||||+|.+-|-. ..+++|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987532 111345999999986532 2346899999999999999999999988777899999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
||+|..+.++++|++.+|+..|..+-. +++|
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL 579 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPL 579 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce---eEeC
Confidence 999988899999999999999998853 4455
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-09 Score=87.07 Aligned_cols=86 Identities=29% Similarity=0.434 Sum_probs=75.0
Q ss_pred EEEEEEeeecCCC---CCCCCcEEEEEECC-eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC
Q 009797 420 LVVIVHEAQDVEG---KHHTNPYARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 495 (525)
Q Consensus 420 L~V~v~~a~~L~~---~~~~dPyv~v~l~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~ 495 (525)
|.|.|++|++|+. .+..||||++.+.+ ...+|++..++.||.|||.|.|.+... ....+.++|++.+. ...
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~----~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDR----FSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCC----CCC
Confidence 4689999999976 35799999999998 778999999999999999999999873 34689999999975 456
Q ss_pred CccceEEEEEccccc
Q 009797 496 KVLFQFYFIFYLVHR 510 (525)
Q Consensus 496 d~~lG~v~I~l~~~~ 510 (525)
+.++|.+.+++.++.
T Consensus 76 ~~~ig~~~~~l~~l~ 90 (102)
T cd00030 76 DDFLGEVEIPLSELL 90 (102)
T ss_pred CceeEEEEEeHHHhh
Confidence 899999999999975
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-09 Score=109.87 Aligned_cols=98 Identities=18% Similarity=0.132 Sum_probs=80.9
Q ss_pred CcceEEEEEEeeecCCC--------CCCCCcEEEEEECCe-----EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009797 416 GGGLLVVIVHEAQDVEG--------KHHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 482 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~--------~~~~dPyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~ 482 (525)
....|.|+|+.|++++. ...+||||+|.+.|- .++|++..++.||+|||+|+|.+..+++ ..|.|+
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL-AlLrf~ 485 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL-ALISFE 485 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc-eEEEEE
Confidence 35679999999998741 125799999999763 4578777788999999999999988743 689999
Q ss_pred EEEcccCccCCCCCccceEEEEEccccccchhhhcc
Q 009797 483 VCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRM 518 (525)
Q Consensus 483 V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~ 518 (525)
|+|+|. .+.|+++|+..+++.+++.|.++..-
T Consensus 486 V~D~D~----~~~ddfiGQ~~LPv~~Lr~GyR~VpL 517 (537)
T PLN02223 486 VYDYEV----STADAFCGQTCLPVSELIEGIRAVPL 517 (537)
T ss_pred EEecCC----CCCCcEEEEEecchHHhcCCceeEec
Confidence 999985 56799999999999999999877653
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-10 Score=117.22 Aligned_cols=133 Identities=26% Similarity=0.501 Sum_probs=104.2
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC-------------------------cC---CceeeeecCCC
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED-------------------------KL---PSKKTTVKHKN 305 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~-------------------------~~---~~~kT~v~~~t 305 (525)
..+.|.-.+.|.+.+|+||.++|.+|.+|||+...+... .. -.+-|++++.|
T Consensus 108 ~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T 187 (1103)
T KOG1328|consen 108 QNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT 187 (1103)
T ss_pred CCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc
Confidence 445566778888999999999999999999999887210 00 02468899999
Q ss_pred CCCeEeeEEEEEeeCCCCCeEEEEEEecCCC---------------------------------C---CCCccEEEEEEC
Q 009797 306 LNPEWNEEYNFTVRDPESQAVELAVYDWEQV---------------------------------G---KHDKMGMNVVPL 349 (525)
Q Consensus 306 ~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~---------------------------------~---~d~~lG~~~i~L 349 (525)
+||.|+|.|.|.+.+..++.+.+.+||+|+- + .|||+|.+.+||
T Consensus 188 LnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl 267 (1103)
T KOG1328|consen 188 LNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPL 267 (1103)
T ss_pred CCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccch
Confidence 9999999999999999899999999998742 2 288999999999
Q ss_pred cccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecC
Q 009797 350 KELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK 392 (525)
Q Consensus 350 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 392 (525)
.++... +.+.|+.|.+.. ..++..|++++.+......
T Consensus 268 ~EiP~~-Gld~WFkLepRS-----~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 268 AEIPPD-GLDQWFKLEPRS-----DKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred hcCCcc-hHHHHhccCccc-----ccccccceEEEEEEEeeec
Confidence 999876 344555553322 2468899999999776543
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.95 E-value=3e-09 Score=111.93 Aligned_cols=99 Identities=23% Similarity=0.321 Sum_probs=82.4
Q ss_pred eeEEEEEEEeccCCccc------CcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEE
Q 009797 259 VGILHVKVVKAMNLKKK------DLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAV 330 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~------d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v 330 (525)
...|.|+|+.+.+++.. +.....||||+|.+-|-. ...++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987421 112356999999996532 2346889999999999999999999988888999999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCC
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEP 357 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~ 357 (525)
+|+|...+|+++|+..+|+..|..+-.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc
Confidence 999988899999999999999998843
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.9e-09 Score=109.63 Aligned_cols=98 Identities=29% Similarity=0.469 Sum_probs=82.3
Q ss_pred EEEEEEEeccCCcccCc----CCCCCcEEEEEEcCCc--CCceeee-ecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEec
Q 009797 261 ILHVKVVKAMNLKKKDL----LGASDPYVKLKITEDK--LPSKKTT-VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 333 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~----~g~~dpyv~v~~~~~~--~~~~kT~-v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 333 (525)
+|.|+|+++.+++.... ...+||||.|.+-|-+ ....+|+ +..++-||.|+|+|+|.+..|+-.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999997664422 2457999999986533 2345788 667889999999999999999888999999999
Q ss_pred CCCCCCCccEEEEEECcccCCCCCe
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPS 358 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~ 358 (525)
|..++|||+|+..+|+..|..+-.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh 721 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH 721 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee
Confidence 9999999999999999999988543
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-09 Score=109.81 Aligned_cols=99 Identities=20% Similarity=0.322 Sum_probs=83.4
Q ss_pred CCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009797 410 PENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 410 ~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
.++.+.-+..+.++|.+|++|..+ |.+||||.+.++..+++|+++-..+||+|||.|.|.+++. .+.|.+.|||.
T Consensus 287 legsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns--tdrikvrvwde 364 (1283)
T KOG1011|consen 287 LEGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDE 364 (1283)
T ss_pred hccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC--CceeEEEEecC
Confidence 455556788999999999999864 6899999999999999999999999999999999999984 57899999999
Q ss_pred ccCcc------C-CCCCccceEEEEEccccc
Q 009797 487 SSRIG------L-LHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 487 ~~~~~------~-~~~d~~lG~v~I~l~~~~ 510 (525)
|...- + ..+|++||+..|.+..+.
T Consensus 365 d~dlksklrqkl~resddflgqtvievrtls 395 (1283)
T KOG1011|consen 365 DNDLKSKLRQKLTRESDDFLGQTVIEVRTLS 395 (1283)
T ss_pred cccHHHHHHHHhhhcccccccceeEEEEecc
Confidence 75210 0 247999999999887764
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.88 E-value=9e-09 Score=108.19 Aligned_cols=98 Identities=23% Similarity=0.330 Sum_probs=81.0
Q ss_pred eeEEEEEEEeccCCc--cc--C--cCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEE
Q 009797 259 VGILHVKVVKAMNLK--KK--D--LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAV 330 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~--~~--d--~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v 330 (525)
...|.|+|+.+.+++ .. . .....||||+|.+.|-. ..+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999998753 11 1 12357999999996532 2346899999999999999999999888878999999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCC
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
+|+|..+.++++|++.+|+..|..+-
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy 556 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGI 556 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCcc
Confidence 99998888999999999999999884
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-08 Score=104.60 Aligned_cols=125 Identities=25% Similarity=0.354 Sum_probs=93.1
Q ss_pred eeEEEEEEEeccCCcc---cC---cCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeE-eeEEEEEeeCCCCCeEEEE
Q 009797 259 VGILHVKVVKAMNLKK---KD---LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEW-NEEYNFTVRDPESQAVELA 329 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~---~d---~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w-~e~f~f~v~~~~~~~L~i~ 329 (525)
...|+|+|++|.+|+. .+ .....||||+|.+.+-. ....+|++++++.||.| ||+|.|.+..++-..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3479999999998731 11 12347999999986532 23468999988899999 9999999998887899999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
|+|+|..+.++++|++.+|+..|..+-.+ ++|... . . ..-...+|.+.+.+.+.
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR~---VpL~~~---~-G-~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVRA---VRLHDR---A-G-KAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCeeE---EEccCC---C-C-CCCCCeEEEEEEEEcCc
Confidence 99999888999999999999999887432 233211 1 0 11234578888877653
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.4e-09 Score=83.39 Aligned_cols=86 Identities=21% Similarity=0.416 Sum_probs=71.1
Q ss_pred EEEEEEeccCCcccC---cCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCC
Q 009797 262 LHVKVVKAMNLKKKD---LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (525)
Q Consensus 262 L~V~v~~A~~L~~~d---~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (525)
|.|+|.+|+|+.-.+ ..+.+||||.+.+++.. +.||++ +.||.|||+|.|.+. ....+.+.|||.. ...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~-~~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKG-GDQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCC-CCe
Confidence 679999999998777 56789999999999764 257765 489999999999994 3678999999985 345
Q ss_pred CCccEEEEEECcccCCC
Q 009797 339 HDKMGMNVVPLKELTPE 355 (525)
Q Consensus 339 d~~lG~~~i~L~~l~~~ 355 (525)
.-.+|..-+.++++.++
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 66899999999988754
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-08 Score=105.56 Aligned_cols=97 Identities=22% Similarity=0.208 Sum_probs=80.5
Q ss_pred cceEEEEEEeeecCCC--C-------CCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009797 417 GGLLVVIVHEAQDVEG--K-------HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 482 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~--~-------~~~dPyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~ 482 (525)
...|.|+|+.|++++. . ...||||+|.+-| .+++|+++.++.||+|||+|+|.+..++. ..+.|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL-Allrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL-ALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc-cEEEEE
Confidence 4679999999988742 1 1359999999976 35699999999999999999999987633 589999
Q ss_pred EEEcccCccCCCCCccceEEEEEccccccchhhhcc
Q 009797 483 VCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRM 518 (525)
Q Consensus 483 V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~ 518 (525)
|+|+|. .+.++++|+..+++..++.|.++++-
T Consensus 548 V~D~D~----~~~ddfiGq~~lPv~~Lr~GyR~VpL 579 (599)
T PLN02952 548 VREYDM----SEKDDFGGQTCLPVSELRPGIRSVPL 579 (599)
T ss_pred EEecCC----CCCCCeEEEEEcchhHhcCCceeEeC
Confidence 999975 56799999999999999999876543
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-08 Score=104.01 Aligned_cols=97 Identities=20% Similarity=0.170 Sum_probs=80.2
Q ss_pred cceEEEEEEeeecCC----C-----CCCCCcEEEEEECC-----eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009797 417 GGLLVVIVHEAQDVE----G-----KHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 482 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~----~-----~~~~dPyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~ 482 (525)
...|.|+|+.|++++ . ....||||+|.+.| .+++|+++.++.||+|||.|+|.+..+++ ..|.|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL-AllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL-ALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce-eEEEEE
Confidence 467999999998743 1 12579999999965 24699999999999999999999987643 689999
Q ss_pred EEEcccCccCCCCCccceEEEEEccccccchhhhcc
Q 009797 483 VCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRM 518 (525)
Q Consensus 483 V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~ 518 (525)
|+|+|. .+.|+++|+..|++..++.|-++..-
T Consensus 530 V~d~D~----~~~ddfigq~~lPv~~Lr~GyR~V~L 561 (581)
T PLN02222 530 VHEYDM----SEKDDFGGQTCLPVWELSQGIRAFPL 561 (581)
T ss_pred EEECCC----CCCCcEEEEEEcchhhhhCccceEEc
Confidence 999975 56799999999999999999876543
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-09 Score=110.65 Aligned_cols=98 Identities=27% Similarity=0.443 Sum_probs=84.9
Q ss_pred CceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc----CCceeeeecCCCCCCeEeeEEEEEeeCC----CCCeEEE
Q 009797 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDP----ESQAVEL 328 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~~t~nP~w~e~f~f~v~~~----~~~~L~i 328 (525)
.....|.|.|+.|+++.+-|.+|-+||||+|.+.+.. ....+|+|+..|+||+|+|+|+|.|... +...+.|
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence 4456677888999999999999999999999998754 2457999999999999999999999743 2457999
Q ss_pred EEEecCCCCCCCccEEEEEECcccCC
Q 009797 329 AVYDWEQVGKHDKMGMNVVPLKELTP 354 (525)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~L~~l~~ 354 (525)
+|+|+|-.+.+||-|++.+.|+++..
T Consensus 1024 TVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EeeccceecccccchHHHHhhCCCCC
Confidence 99999999999999999999998864
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-08 Score=105.06 Aligned_cols=98 Identities=21% Similarity=0.125 Sum_probs=81.0
Q ss_pred CcceEEEEEEeeecCCC--C-------CCCCcEEEEEECCe-----EEEeeeecCCCCCcccceEEEEecCCCCCCeEEE
Q 009797 416 GGGLLVVIVHEAQDVEG--K-------HHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHV 481 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~--~-------~~~dPyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i 481 (525)
....|.|+|+.+++++. + ...||||+|.+-|- +++|++..++.||+|||.|+|.+..+++ ..|.|
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL-AllRf 545 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL-ALLRV 545 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce-eEEEE
Confidence 34679999999998642 1 24799999999652 3588988899999999999999987643 68999
Q ss_pred EEEEcccCccCCCCCccceEEEEEccccccchhhhcc
Q 009797 482 EVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRM 518 (525)
Q Consensus 482 ~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~ 518 (525)
+|+|++. .+.|+++|+..|++.+++.|.++..-
T Consensus 546 ~V~d~d~----~~~ddfiGQ~~lPv~~Lr~GyR~V~L 578 (598)
T PLN02230 546 EVHEHDI----NEKDDFGGQTCLPVSEIRQGIHAVPL 578 (598)
T ss_pred EEEECCC----CCCCCEEEEEEcchHHhhCccceEec
Confidence 9999975 56799999999999999999876543
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=96.95 Aligned_cols=177 Identities=19% Similarity=0.277 Sum_probs=126.0
Q ss_pred eeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCC----CCCCCccEEEEEECcccCCCCCeeEEEecccccccCC
Q 009797 297 KKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ----VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND 372 (525)
Q Consensus 297 ~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~----~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~ 372 (525)
.+|.++.+.+||.|.+.|.+.......|.++++++|.+. ...++++|++...+..+.........+-+ .+
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~----~~-- 116 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLL----KP-- 116 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhc----cc--
Confidence 489999999999999999888877778999999999874 35678999999999998765432221111 11
Q ss_pred CCCCceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC--Ce
Q 009797 373 GQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--GE 447 (525)
Q Consensus 373 ~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~--~~ 447 (525)
......|.|.+.+.-.. ..-....-..+|++|..+ +.+|||..++-. ..
T Consensus 117 -~~~~~~g~iti~aee~~-------------------------~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~ 170 (529)
T KOG1327|consen 117 -GKNAGSGTITISAEEDE-------------------------SDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDG 170 (529)
T ss_pred -CccCCcccEEEEeeccc-------------------------ccCceeeeeeeeeecCcccccccCCcceEEEEecCCC
Confidence 12356777777663211 111223334568888875 579999998864 22
Q ss_pred ----EEEeeeecCCCCCcccceEEEEecCC---CCCCeEEEEEEEcccCccCCCCCccceEEEEEccccc
Q 009797 448 ----ERKTKHVKKNRDPRWEEEFQFMLEEP---PTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 448 ----~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
.++|.++++++||.|.+ |....... ..+..+.+.++|.+. .++++++|++..++.++.
T Consensus 171 s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~----~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 171 STQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDS----NGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred ceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCC----CCCcCceeEecccHHHhc
Confidence 24999999999999998 43333321 234589999999986 467899999999888864
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.4e-08 Score=78.14 Aligned_cols=82 Identities=22% Similarity=0.365 Sum_probs=67.6
Q ss_pred EEEEEEeeecCCC------CCCCCcEEEEEECCe-EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 420 LVVIVHEAQDVEG------KHHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 420 L~V~v~~a~~L~~------~~~~dPyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
|.++|++|||+.. .+.+||||.+.+++. +.||++ +.||.|||.|+|.+.. ...+.+.|||+..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk---~nEiel~VyDk~~---- 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK---NNEEEVIVYDKGG---- 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC---CcEEEEEEEeCCC----
Confidence 5789999999974 357899999999987 558887 4899999999999954 3579999999963
Q ss_pred CCCCccceEEEEEccccccc
Q 009797 493 LHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~~ 512 (525)
+..-.+|-..+.+.+|..+
T Consensus 71 -~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred -CeecceeeehhhHHHHHHH
Confidence 3467899999999988544
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.7e-08 Score=101.68 Aligned_cols=126 Identities=25% Similarity=0.380 Sum_probs=94.3
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc---CCceeeeecCCCCCCeEe-eEEEEEeeCCCCCeEEEEEEecCC
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWN-EEYNFTVRDPESQAVELAVYDWEQ 335 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~t~nP~w~-e~f~f~v~~~~~~~L~i~v~d~~~ 335 (525)
-.|.|.|+.|++|+... .|-..|||+|.+-|.. ...++|.+..+++||+|| |+|+|.+.+|+-..|+|.|||.|-
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 56889999999999543 3556799999986643 223567778899999999 999999999998999999999999
Q ss_pred CCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCCC
Q 009797 336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEE 394 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (525)
++...|||++.+|+..+..+-. ..+|... - ...-.-..|.+.+...|....
T Consensus 1144 fs~~~FiaqA~yPv~~ik~GfR---sVpLkN~-y----SEdlELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR---SVPLKNG-Y----SEDLELASLLVFIEMRPVLES 1194 (1267)
T ss_pred cCCcceeeeeecchhhhhccce---eeecccC-c----hhhhhhhhheeeeEeccccCc
Confidence 9988999999999999987631 1222100 0 012234556777777776544
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-08 Score=108.78 Aligned_cols=114 Identities=23% Similarity=0.329 Sum_probs=92.2
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCC---CCCCCcEEEEEECCe-----
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRGE----- 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~l~~~----- 447 (525)
++..|+|.+++.|. .|.|.|.|+.|++|+- ...+||||+.|+...
T Consensus 1509 ~~iggqV~LsIsY~---------------------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~s 1561 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN---------------------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTS 1561 (1639)
T ss_pred cccCceEEEEEEEc---------------------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhh
Confidence 55677999999884 6889999999999953 357999999999753
Q ss_pred EEEeeeecCCCCCcccceEEEE-ecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFM-LEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
++||+++++|+||.|||...|. ++.... ...|.++||..+. +..+.++|.+.|+|.+.... .++.+||.
T Consensus 1562 KRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~----~~en~~lg~v~i~L~~~~l~----kE~~~Wy~ 1632 (1639)
T KOG0905|consen 1562 KRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG----LLENVFLGGVNIPLLKVDLL----KESVGWYN 1632 (1639)
T ss_pred hhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc----eeeeeeeeeeecchhhcchh----hhhcceee
Confidence 4599999999999999999988 333222 2589999999975 77899999999999987544 44558885
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.5e-08 Score=100.74 Aligned_cols=94 Identities=20% Similarity=0.220 Sum_probs=79.6
Q ss_pred eEEEEEEeeecCCCC-------CCCCcEEEEEECCe-----EEEeee-ecCCCCCcccceEEEEecCCCCCCeEEEEEEE
Q 009797 419 LLVVIVHEAQDVEGK-------HHTNPYARILFRGE-----ERKTKH-VKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS 485 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~-------~~~dPyv~v~l~~~-----~~kT~v-~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d 485 (525)
.|.|.|+++++++.. ..+||||.|.+.|- ..+|++ ..++-||.|+|+|+|.+..|++ +-|.|.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL-AliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL-ALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce-eEEEEEEEe
Confidence 899999999976541 35899999999773 358995 4578999999999999998754 689999999
Q ss_pred cccCccCCCCCccceEEEEEccccccchhhhc
Q 009797 486 VSSRIGLLHPKVLFQFYFIFYLVHRFKQECCR 517 (525)
Q Consensus 486 ~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~ 517 (525)
++. .++|+|+|+..|++.+++.|.++++
T Consensus 696 ~d~----~~~ddF~GQ~tlP~~~L~~GyRhVp 723 (746)
T KOG0169|consen 696 YDY----IGKDDFIGQTTLPVSELRQGYRHVP 723 (746)
T ss_pred cCC----CCcccccceeeccHHHhhCceeeee
Confidence 986 6789999999999999998877654
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.4e-08 Score=97.36 Aligned_cols=119 Identities=26% Similarity=0.425 Sum_probs=95.4
Q ss_pred eeEEEEEEEeccCCcccCcC-CCCCcEEEEEEcCCcCCceeeeecCCCCCCeEe-eEEEEEeeCC--CCCeEEEEEEecC
Q 009797 259 VGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN-EEYNFTVRDP--ESQAVELAVYDWE 334 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~-e~f~f~v~~~--~~~~L~i~v~d~~ 334 (525)
.|.|-|+|..|++||-+|.. ...|.||.+.+++.. +||.+..+++||.|| +.|.|++.+. ....|.+++.|+|
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t---~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d 78 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTT---FKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD 78 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccc---eehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc
Confidence 37889999999999999864 467999999998766 599999999999999 7899999754 3678999999999
Q ss_pred CCCCCCccEEEEEECcccCCCCC----------eeEEEecccccccCCCCCCceeeEEEEEEE
Q 009797 335 QVGKHDKMGMNVVPLKELTPEEP----------SVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 387 (525)
Q Consensus 335 ~~~~d~~lG~~~i~L~~l~~~~~----------~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (525)
..+.+|-||.+.++++.|.-++. ..-|+++...+ ...+|+|.+-+.
T Consensus 79 tysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-------hgirgeinvivk 134 (1169)
T KOG1031|consen 79 TYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-------HGIRGEINVIVK 134 (1169)
T ss_pred ccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-------ccccceeEEEEE
Confidence 99999999999999998864321 23577664322 356777776554
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.2e-08 Score=100.47 Aligned_cols=123 Identities=21% Similarity=0.309 Sum_probs=93.9
Q ss_pred EEeccCCcccCcCCCCCcEEEEEEcCCc-CCceeeeecCCCCCCeEeeEEEEEeeCC---------------CCCeEEEE
Q 009797 266 VVKAMNLKKKDLLGASDPYVKLKITEDK-LPSKKTTVKHKNLNPEWNEEYNFTVRDP---------------ESQAVELA 329 (525)
Q Consensus 266 v~~A~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT~v~~~t~nP~w~e~f~f~v~~~---------------~~~~L~i~ 329 (525)
++.++++-+.. ++.+|||+.+...+.. ....+|++++.|.+|.|+|.|+|.+... ..-.|+++
T Consensus 137 ~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~ 215 (800)
T KOG2059|consen 137 VLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVD 215 (800)
T ss_pred hhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEe
Confidence 34444555554 4569999999986543 2336899999999999999999998754 24568899
Q ss_pred EEe-cCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 330 VYD-WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 330 v~d-~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
+|+ .+....++|+|++.+++..+........|+.|.+.-+.+....+..-|.+++.++|.
T Consensus 216 lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 216 LWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred eccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 999 555666999999999999998666777788877665544444567789999999885
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-07 Score=98.56 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=79.4
Q ss_pred cceEEEEEEeeecCCC---C------CCCCcEEEEEECCe-----EEEeeeecCCCCCcc-cceEEEEecCCCCCCeEEE
Q 009797 417 GGLLVVIVHEAQDVEG---K------HHTNPYARILFRGE-----ERKTKHVKKNRDPRW-EEEFQFMLEEPPTNDRLHV 481 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~---~------~~~dPyv~v~l~~~-----~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~i 481 (525)
...|.|+|++|++|+. . ...||||+|.+.|- +++|++++++.||+| ||.|+|.+..+++ ..|.|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL-A~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL-ALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce-eEEEE
Confidence 4579999999998731 1 23799999998652 458999988899999 9999999988644 58999
Q ss_pred EEEEcccCccCCCCCccceEEEEEccccccchhhhc
Q 009797 482 EVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCR 517 (525)
Q Consensus 482 ~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~ 517 (525)
.|+|++. .+.|+++|+..|+++.++.|.+++.
T Consensus 509 ~V~D~d~----~~~d~figq~~lPv~~Lr~GYR~Vp 540 (567)
T PLN02228 509 KVQDYDN----DTQNDFAGQTCLPLPELKSGVRAVR 540 (567)
T ss_pred EEEeCCC----CCCCCEEEEEEcchhHhhCCeeEEE
Confidence 9999975 5679999999999999998877654
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.6e-07 Score=96.76 Aligned_cols=122 Identities=16% Similarity=0.282 Sum_probs=91.5
Q ss_pred CceeEEEEEEEeccCCccc----CcC-CCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEE
Q 009797 257 RPVGILHVKVVKAMNLKKK----DLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY 331 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~ 331 (525)
.-.|.|.++|.+|+-+... +.. ...||||.|.+++.+. .|| .+..||.|+|+|.+.+.......+.|+|.
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk 81 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLK 81 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEe
Confidence 3479999999999843221 111 1239999999997664 577 55669999999999998664457999998
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCC-eeEEEecccccccCCCCCCcee-eEEEEEEEEEecCCC
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEP-SVKTLDLLKNMDLNDGQNEKSR-GQLVVEFIYKPFKEE 394 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~-G~l~l~l~~~p~~~~ 394 (525)
| ...+||.+.+|..++..++. .+.|+++...- +.... ..|++++.|.|....
T Consensus 82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN------GKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC------CCCCCCCEEEEEEEEEEhhhC
Confidence 8 26799999999999998865 77888875421 11223 599999999998765
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.8e-08 Score=103.67 Aligned_cols=230 Identities=16% Similarity=0.205 Sum_probs=146.8
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC---------CCCeEEEE
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---------ESQAVELA 329 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---------~~~~L~i~ 329 (525)
.-.+++.+.+|+.|...+..+.+|||+.+...++. +.|.++.+|+||.|+++..|.-.+. .-..+.++
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs---~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e 281 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQS---KETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE 281 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccCCCchhhhhccccc---ceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence 44567788899999999999999999999988765 5899999999999999987752211 13468899
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCCCCCCC-cccccccccC
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPK-SFEESQTVQK 408 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~-~~~~~~~~~~ 408 (525)
+||.++.+.++++|++.....-... .+...|.++.+ ++...|.+.++....-.... .+- ...+...+..
T Consensus 282 ~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r--------g~~l~gd~l~a~eliq~~~~-i~~p~~~~~~~~~~ 351 (1105)
T KOG1326|consen 282 VYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR--------GAFLDGDVLIAAELIQIGKP-IPQPPPQREIIFSL 351 (1105)
T ss_pred eehhhhhchHHhhcccccceEEEec-CCccceEEeec--------ccccccchhHHHHHHhhcCC-CCCCCcccccceec
Confidence 9999999999999997765443333 23444555432 23445555444322110000 000 0000000001
Q ss_pred CCCC--CCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeec-CCCCCcccceEEEEecCCC----CCCe
Q 009797 409 APEN--TPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPP----TNDR 478 (525)
Q Consensus 409 ~~~~--~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~----~~~~ 478 (525)
.|.. ...+.+.+.|-...-+|+... ....|-+-+.++++..+|-++. .-.||.++..|.+..-..+ ....
T Consensus 352 vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~pp 431 (1105)
T KOG1326|consen 352 VPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPP 431 (1105)
T ss_pred cccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCcc
Confidence 1111 112333344333334555432 3678999999999988877665 4578999887766544322 2348
Q ss_pred EEEEEEEcccCccCCCCCccceEEEEE
Q 009797 479 LHVEVCSVSSRIGLLHPKVLFQFYFIF 505 (525)
Q Consensus 479 l~i~V~d~~~~~~~~~~d~~lG~v~I~ 505 (525)
+.++|.|.+. +++....|.+.|.
T Consensus 432 l~akvvd~~~----fg~~~v~g~c~i~ 454 (1105)
T KOG1326|consen 432 LNAKVVDLRQ----FGRMEVVGQCKIL 454 (1105)
T ss_pred ceeEEEeccc----ccceeehhhhcch
Confidence 9999999986 8899999998874
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.49 E-value=5e-07 Score=97.43 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=77.7
Q ss_pred cceEEEEEEeeecCCC---------------------CCCCCcEEEEEECCeEE-EeeeecCC-CCCcccceEEEEecCC
Q 009797 417 GGLLVVIVHEAQDVEG---------------------KHHTNPYARILFRGEER-KTKHVKKN-RDPRWEEEFQFMLEEP 473 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~---------------------~~~~dPyv~v~l~~~~~-kT~v~~~t-~nP~wne~f~f~v~~~ 473 (525)
-|.|.++|.+|++|+. ++.+||||.|.+++.+. ||+++.+. .||+|||.|...|...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 4678888888888763 24679999999998776 99999885 6999999999999875
Q ss_pred CCCCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 474 PTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 474 ~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
...+.|.|.|.+- ++ ..+||.+.|+..++..|. +-+.||
T Consensus 87 --~~~v~f~vkd~~~----~g-~~~ig~~~~p~~~~~~g~----~i~~~~ 125 (808)
T PLN02270 87 --ASNIIFTVKDDNP----IG-ATLIGRAYIPVEEILDGE----EVDRWV 125 (808)
T ss_pred --cceEEEEEecCCc----cC-ceEEEEEEEEHHHhcCCC----ccccEE
Confidence 3689999999974 33 669999999999987664 355554
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.6e-07 Score=94.48 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=83.8
Q ss_pred ceEEEEEEeeecCCCCC--CCCcEEEEEECCe-----EE-EeeeecCCCCCccc-ceEEEEecCCCCCCeEEEEEEEccc
Q 009797 418 GLLVVIVHEAQDVEGKH--HTNPYARILFRGE-----ER-KTKHVKKNRDPRWE-EEFQFMLEEPPTNDRLHVEVCSVSS 488 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~~--~~dPyv~v~l~~~-----~~-kT~v~~~t~nP~wn-e~f~f~v~~~~~~~~l~i~V~d~~~ 488 (525)
-.|.|.|+.||.|+..| ...|||+|.+-|. ++ +|.++.+..||+|| |.|+|.|.+|.. .-|.+.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~-A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF-AFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce-EEEEEEEecccc
Confidence 46889999999999753 4679999998652 33 55666788999999 999999999844 689999999975
Q ss_pred CccCCCCCccceEEEEEccccccchhhhcccCCC
Q 009797 489 RIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDP 522 (525)
Q Consensus 489 ~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~ 522 (525)
++...+||++..++..|+.|-++..-||..
T Consensus 1144 ----fs~~~FiaqA~yPv~~ik~GfRsVpLkN~y 1173 (1267)
T KOG1264|consen 1144 ----FSDPNFLAQATYPVKAIKSGFRSVPLKNGY 1173 (1267)
T ss_pred ----cCCcceeeeeecchhhhhccceeeecccCc
Confidence 888899999999999999998888887753
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.9e-07 Score=94.48 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=80.2
Q ss_pred cceEEEEEEeeecCCCC----CCCCcEEEEEECCeEEEeeeecCCCCCccc-ceEEEEecCCCCC-CeEEEEEEEcccCc
Q 009797 417 GGLLVVIVHEAQDVEGK----HHTNPYARILFRGEERKTKHVKKNRDPRWE-EEFQFMLEEPPTN-DRLHVEVCSVSSRI 490 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~~~~kT~v~~~t~nP~wn-e~f~f~v~~~~~~-~~l~i~V~d~~~~~ 490 (525)
.|.|.|.|..||+||.. ...|.||++.+.+.++||.+..+++||.|| +=|.|.+.+.++. +.|.|.+.|+|.
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-- 79 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-- 79 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc--
Confidence 47889999999999974 467999999999999999999999999999 4699999886554 499999999997
Q ss_pred cCCCCCccceEEEEEcccccc
Q 009797 491 GLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 491 ~~~~~d~~lG~v~I~l~~~~~ 511 (525)
.+.++.||.+.|+++-+..
T Consensus 80 --ysandaigkv~i~idpl~~ 98 (1169)
T KOG1031|consen 80 --YSANDAIGKVNIDIDPLCL 98 (1169)
T ss_pred --cccccccceeeeccChHHH
Confidence 7889999999999998743
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.9e-07 Score=96.46 Aligned_cols=107 Identities=24% Similarity=0.263 Sum_probs=87.1
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEE---eeCCCCCeEEEEEEe
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFT---VRDPESQAVELAVYD 332 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~---v~~~~~~~L~i~v~d 332 (525)
..|+|+|.|..|++|+-...+..+||||+.++.++. ..++||+++++|.||+|||...+. ........|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 378999999999999655545679999999997653 345799999999999999987765 222335789999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
.+....+.++|.+.++|.++...+....|+.+
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 99888999999999999998877665566655
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.2e-06 Score=80.82 Aligned_cols=98 Identities=31% Similarity=0.435 Sum_probs=81.3
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEEE
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELA 329 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~ 329 (525)
.+.....-|.|++++|.+|..+|.+|.+||||..++..+. ..+++|.+.+++.||+||+.|.+.+.. .....+.+.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 4556678899999999999999999999999999987542 345789999999999999999998863 236689999
Q ss_pred EEecCCCCCCCccEEEEEECcc
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKE 351 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~ 351 (525)
|||++..+..+++|-+......
T Consensus 307 vgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred ecccCCCcCccCCCcccccccc
Confidence 9999988788999887654443
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.6e-06 Score=64.65 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=64.2
Q ss_pred EEEEEeeecCCC--C--CCCCcEEEEEEC--Ce-EEEeeeecCCCCCcccceEEEEecCCCCCC-eEEEEEEEcccCccC
Q 009797 421 VVIVHEAQDVEG--K--HHTNPYARILFR--GE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTND-RLHVEVCSVSSRIGL 492 (525)
Q Consensus 421 ~V~v~~a~~L~~--~--~~~dPyv~v~l~--~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~l~i~V~d~~~~~~~ 492 (525)
-+++.+|+||.- . .++.-|++--+. .- ..||+......||+|.|+|.|.+......+ .|.++|+..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~------ 75 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ------ 75 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc------
Confidence 468899999853 2 234557665442 22 349999999999999999999988655555 899999985
Q ss_pred CCCCccceEEEEEcccc
Q 009797 493 LHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~ 509 (525)
..+++.||.++++++++
T Consensus 76 ~~RKe~iG~~sL~l~s~ 92 (103)
T cd08684 76 TPRKRTIGECSLSLRTL 92 (103)
T ss_pred CCccceeeEEEeecccC
Confidence 56799999999999996
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.7e-06 Score=64.61 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=69.0
Q ss_pred EEEEEeccCCcccCcCC-CCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEecCCCCCC
Q 009797 263 HVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVGKH 339 (525)
Q Consensus 263 ~V~v~~A~~L~~~d~~g-~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~~d 339 (525)
-++++.|+||......| .+.-|++--+.-.+....||+++++..||+|.|+|.|.+... ..-.|-+.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 57899999998766544 344566644432333346899999999999999999987633 35568888888 46788
Q ss_pred CccEEEEEECcccCCCC
Q 009797 340 DKMGMNVVPLKELTPEE 356 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~~~ 356 (525)
+.||.|.+.++++-+++
T Consensus 80 e~iG~~sL~l~s~geeE 96 (103)
T cd08684 80 RTIGECSLSLRTLSTQE 96 (103)
T ss_pred ceeeEEEeecccCCHHH
Confidence 89999999999987653
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >KOG3532 consensus Predicted protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.1e-05 Score=78.75 Aligned_cols=226 Identities=16% Similarity=0.257 Sum_probs=152.4
Q ss_pred CCCCcccCCCC-------CchHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHhcCCceeeeeEEEeEEeCCCCC
Q 009797 58 EIPLWVKCPDY-------DRVDWLNKFLELMWP------YLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLP 124 (525)
Q Consensus 58 ~~p~w~~~~~~-------E~~~WlN~~l~~~W~------~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~ 124 (525)
+.|.|...... -.|-.+|.+++.+.. .+..++.+.+...++.++.....+--++.+++.++-+|++.
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 58888766322 245667788888776 24455556666666666666544434899999999999999
Q ss_pred CeEeeeEEEecC------------C-------------CeEEEEeeeeEeCCCcEEEEEEE-cceEEEEEEEeEEEEEEE
Q 009797 125 PTFQGMKVYVTD------------E-------------KELIMEPCLKWAANPNVTIGVKA-FGLKATVQVVDLQVFAQP 178 (525)
Q Consensus 125 P~i~~v~~~~~~------------~-------------~~~~le~~~~~~~~~~i~l~~~~-~~~~~~v~v~~~~~~g~~ 178 (525)
|.+++.+++.-+ + ..+.+=.++.|.|+.--++++.. .+.+..+.++-.+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 999999998611 0 01334468889888776666654 333444555677999999
Q ss_pred EEEEeecCCCCCeeeEEEEEcCCCCeEEEEEEEc-CcCcccCcchHHHHHHHHHHHHhhcccCCccc-------cccccC
Q 009797 179 RITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLV-GADLMSIPGLYRFVQELIKTQVANMYLWPKTL-------EVPILD 250 (525)
Q Consensus 179 rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~-g~~~~~iP~l~~~i~~~i~~~l~~~~v~P~~~-------~~~i~~ 250 (525)
|+.+. ..|+ .+|+++|+..|.++-+++.- -++-+. -.+.+.|...++..+.....||++- ..|+..
T Consensus 241 r~~~~----r~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ-~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~~ 314 (1051)
T KOG3532|consen 241 RVILS----RQPY-HHWTFSFVGQPIFETDINSQIQGHQLQ-RLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIFQ 314 (1051)
T ss_pred eEEEE----eccc-eeeeeeeccCchhhhhhHHHHHHHHHH-HHhHHHHHHHHHHHHHhhccCcchhhhccccccCcccc
Confidence 99986 2333 78999999999886665532 012111 1234567777788888889999852 122222
Q ss_pred CCc-----cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcC
Q 009797 251 PSK-----AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE 291 (525)
Q Consensus 251 ~~~-----~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~ 291 (525)
... ..-.+.|.+.|++.++..|... .++..-||.+.+..
T Consensus 315 a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 315 ASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES 358 (1051)
T ss_pred cCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence 111 1235689999999999988654 47788999998864
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.8e-05 Score=82.34 Aligned_cols=92 Identities=17% Similarity=0.291 Sum_probs=75.8
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEE-EEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEec
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKL-KITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 333 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v-~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 333 (525)
.+.-.|+..+++++|+ ++ -.|+|..+ +++.+. +||.+.++|.||+||+...|.+...+....++.|||.
T Consensus 49 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~---f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQT---FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFET 118 (644)
T ss_pred cccccCeEEEEeehhh----hc---cCCcEEEEEEeccee---eeeccccccCCcccchhhceEeccCCcceEEEEEEec
Confidence 4456899999999998 33 25887665 455433 6999999999999999999999876666789999999
Q ss_pred CCCCCCCccEEEEEECcccCCCC
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
+.++.++++|.|+++|.++...+
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHH
Confidence 99999999999999988776543
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0056 Score=60.98 Aligned_cols=230 Identities=14% Similarity=0.216 Sum_probs=148.6
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeC-------CCCCeEEEEEEecC
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-------PESQAVELAVYDWE 334 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~-------~~~~~L~i~v~d~~ 334 (525)
+.|+|+++++.+... ...-.+..++++... .|..+..+..|.||.....++.. .....|++++|..+
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 678999999998762 345677788887764 77788889999999888887752 24678999999988
Q ss_pred -CCCCCCccEEEEEECccc---CCC--CCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCCC---CCC--Cc---c
Q 009797 335 -QVGKHDKMGMNVVPLKEL---TPE--EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEE---DLP--KS---F 400 (525)
Q Consensus 335 -~~~~d~~lG~~~i~L~~l---~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~---~~~--~~---~ 400 (525)
..+..+.+|.+.++|+.. ..+ .....|++|+...+. -.+.+-+|.+.+........ +.. ++ .
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~----y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSK----YKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEccccccc----cccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 557788999999999998 544 345577777543211 12345567777766543332 010 00 0
Q ss_pred cccc-------cccC----------------CCCCCCCCcceEEEEEEeeecCCCC---------CCCCcEEEEEECCeE
Q 009797 401 EESQ-------TVQK----------------APENTPAGGGLLVVIVHEAQDVEGK---------HHTNPYARILFRGEE 448 (525)
Q Consensus 401 ~~~~-------~~~~----------------~~~~~~~~~g~L~V~v~~a~~L~~~---------~~~dPyv~v~l~~~~ 448 (525)
...+ .... -|.+.....-.|.|++..|+||..- +...-|....+-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 0000 0000 0111122344688888899887542 123446666778888
Q ss_pred EEeeeecCCCCCccc--ceEEEEecCC--------CCCCeEEEEEEEcccCccCCCCCccceEEEEEccccc
Q 009797 449 RKTKHVKKNRDPRWE--EEFQFMLEEP--------PTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 449 ~kT~v~~~t~nP~wn--e~f~f~v~~~--------~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
..|...+...+|.|. +..-+.+... .....|.|.++-. +..||++.|++..+.
T Consensus 232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g---------~~~Lg~~~v~l~~Ll 294 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG---------NQSLGSTSVPLQPLL 294 (340)
T ss_pred eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC---------CcEEEEEEEEhhhcc
Confidence 888888888899875 3333665532 1123677766654 678999999999874
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.72 E-value=5.2e-05 Score=78.19 Aligned_cols=87 Identities=29% Similarity=0.554 Sum_probs=70.9
Q ss_pred EeccCCcccCcCCCCCcEEEEEEc---CCcCCceeeeecCCCCCCeEeeEEEEEeeCCC----CCeEEEEEEecCCCCCC
Q 009797 267 VKAMNLKKKDLLGASDPYVKLKIT---EDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQVGKH 339 (525)
Q Consensus 267 ~~A~~L~~~d~~g~~dpyv~v~~~---~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~----~~~L~i~v~d~~~~~~d 339 (525)
++|++|.++|..+++|||..++-. +.....++|.+.++++||.|.+ |.+...... ...+.+.+||++..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 568999999999999999998753 2233457999999999999995 555544322 46788999999999999
Q ss_pred CccEEEEEECcccCC
Q 009797 340 DKMGMNVVPLKELTP 354 (525)
Q Consensus 340 ~~lG~~~i~L~~l~~ 354 (525)
+++|++..++.++..
T Consensus 222 ~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQE 236 (529)
T ss_pred CceeEecccHHHhcc
Confidence 999999999999975
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.64 E-value=9.5e-05 Score=79.36 Aligned_cols=88 Identities=14% Similarity=0.245 Sum_probs=72.7
Q ss_pred CcceEEEEEEeeecCCCCCCCCcEEE-EEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009797 416 GGGLLVVIVHEAQDVEGKHHTNPYAR-ILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~~~~dPyv~-v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 494 (525)
-+|++.+++++|+ .+..|||.. +++|-+..||.+.++|.||+||+...|.+..... ...++.|||.+. ++
T Consensus 52 ~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~s 122 (644)
T PLN02964 52 FSGIALLTLVGAE----MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGP-HLARISVFETNR----LS 122 (644)
T ss_pred ccCeEEEEeehhh----hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCc-ceEEEEEEecCC----CC
Confidence 5789999999997 334699766 5566778899999999999999999999976533 457999999986 89
Q ss_pred CCccceEEEEEccccccc
Q 009797 495 PKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 495 ~d~~lG~v~I~l~~~~~~ 512 (525)
.++.+|.+.++|.++...
T Consensus 123 ~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred HHHhhhheeecHhhccHH
Confidence 999999999988776433
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=9.3e-05 Score=61.56 Aligned_cols=94 Identities=20% Similarity=0.351 Sum_probs=68.9
Q ss_pred EEEEEEeccCCcccCc-------------CCCCCcEEEEEEcC-CcCCceeeeecCCCCCCeEeeEEEEEee--------
Q 009797 262 LHVKVVKAMNLKKKDL-------------LGASDPYVKLKITE-DKLPSKKTTVKHKNLNPEWNEEYNFTVR-------- 319 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~-------------~g~~dpyv~v~~~~-~~~~~~kT~v~~~t~nP~w~e~f~f~v~-------- 319 (525)
|.|.|++|.+|+.... .-.-++||++.+.- ......+|+++-++..|.|+.+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4688999999975321 01238999999642 1223468999999999999999999875
Q ss_pred C-------CCCCeEEEEEEecCCC----------CCCCccEEEEEECcccCCC
Q 009797 320 D-------PESQAVELAVYDWEQV----------GKHDKMGMNVVPLKELTPE 355 (525)
Q Consensus 320 ~-------~~~~~L~i~v~d~~~~----------~~d~~lG~~~i~L~~l~~~ 355 (525)
. .+...+.++||+.+.. .+|-+||.+.+|+.+|...
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~ 133 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK 133 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence 1 1356789999997632 2455899999999998754
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00026 Score=58.95 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=72.1
Q ss_pred EEEEEEeeecCCCC----------------CCCCcEEEEEEC----CeEEEeeeecCCCCCcccceEEEEec--------
Q 009797 420 LVVIVHEAQDVEGK----------------HHTNPYARILFR----GEERKTKHVKKNRDPRWEEEFQFMLE-------- 471 (525)
Q Consensus 420 L~V~v~~a~~L~~~----------------~~~dPyv~v~l~----~~~~kT~v~~~t~nP~wne~f~f~v~-------- 471 (525)
|.|.|++|.+|... =..|+||++.+. ++.++|+++-++-.|.|+..++|.|.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 45778888877531 146899999953 35679999999999999999999998
Q ss_pred CC------CCCCeEEEEEEEcccCccC------CCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 472 EP------PTNDRLHVEVCSVSSRIGL------LHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 472 ~~------~~~~~l~i~V~d~~~~~~~------~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
.. .....+.++||.++.+..- -.+|-.||.+.|++.++.. +..--..||
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~---~rsGitGW~ 141 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLT---KRSGITGWY 141 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhh---cccCccccc
Confidence 11 1124799999998643210 2357799999999998743 334445565
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00052 Score=74.39 Aligned_cols=85 Identities=15% Similarity=0.222 Sum_probs=64.8
Q ss_pred CcceEEEEEEeeecCCCC--------CCCCcEEEEEECCeEE-EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009797 416 GGGLLVVIVHEAQDVEGK--------HHTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~--------~~~dPyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
--|.|.++|.+|+-+... ...||||.|.+++.+. || .+..||+|+|.|...|... .+..+.|.|.|.
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~~ 83 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKTK 83 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEecC
Confidence 346677777777532110 1239999999988765 88 5566999999999999885 435799999883
Q ss_pred ccCccCCCCCccceEEEEEccccccch
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
..+||.+.|+..++..|.
T Consensus 84 ---------~~~ig~~~~p~~~~~~g~ 101 (758)
T PLN02352 84 ---------CSILGRFHIQAHQIVTEA 101 (758)
T ss_pred ---------CeEEEEEEEEHHHhhCCC
Confidence 679999999999987663
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00028 Score=68.95 Aligned_cols=90 Identities=21% Similarity=0.274 Sum_probs=73.2
Q ss_pred CcceEEEEEEeeecCCCC----CCCCcEEEEEECCe-----EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009797 416 GGGLLVVIVHEAQDVEGK----HHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
..|.+.|.|++|++|..+ ..++|||+||+.+. +++|+...+|.+|-|.+...|.-.. ....|.+.||..
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp--~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP--PGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC--CccEEEEEEecc
Confidence 678899999999999753 36899999999653 4599999999999998877776543 356999999976
Q ss_pred ccCccCCCCCccceEEEEEccccc
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
-.+ ...+.++|.++|-+.++-
T Consensus 345 ygR---md~k~fmg~aqi~l~eL~ 365 (405)
T KOG2060|consen 345 YGR---MDHKSFMGVAQIMLDELN 365 (405)
T ss_pred ccc---cchHHHhhHHHHHhhhhc
Confidence 433 678899999999998873
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00024 Score=69.44 Aligned_cols=109 Identities=26% Similarity=0.425 Sum_probs=85.2
Q ss_pred CCceeEEEEEEEeccCCcccCcCC-CCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEE-
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLG-ASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY- 331 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g-~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~- 331 (525)
-...|.+.|.|++|++|..+...+ .++|||+|++.+.. ..+.+|+...+|.+|-+.+...|.-. +....|.+.||
T Consensus 265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~g 343 (405)
T KOG2060|consen 265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWG 343 (405)
T ss_pred hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEec
Confidence 345899999999999998765433 68999999986543 34568999999999988877666654 34678999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCC-CeeEEEecc
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEE-PSVKTLDLL 365 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~l~ 365 (525)
|+.++..+.|+|.+.+-+.+|.... ....|+++.
T Consensus 344 dygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlf 378 (405)
T KOG2060|consen 344 DYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLF 378 (405)
T ss_pred cccccchHHHhhHHHHHhhhhccccccceeeeecc
Confidence 5677778889999999999998765 556677664
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.011 Score=52.46 Aligned_cols=92 Identities=24% Similarity=0.325 Sum_probs=65.4
Q ss_pred ceEEEEEEeeecCCCCCCCCcEEEEEE--CCeEE----EeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcccC
Q 009797 418 GLLVVIVHEAQDVEGKHHTNPYARILF--RGEER----KTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSR 489 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~~~~dPyv~v~l--~~~~~----kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~ 489 (525)
..++|+|+++.+++....+|-||++.+ +++.. .|+.+.. .++.|||-.+|.+. +.+.+..|.|+||+....
T Consensus 8 ~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~ 86 (158)
T cd08398 8 SNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGR 86 (158)
T ss_pred CCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecc
Confidence 468899999999987666788888854 44432 4554444 68999998888765 445677999999998642
Q ss_pred ccCCCCCccceEEEEEccccc
Q 009797 490 IGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 490 ~~~~~~d~~lG~v~I~l~~~~ 510 (525)
.+.-.....||.+.+.|-+..
T Consensus 87 ~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 87 KGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred cCCCCceEEEEEEEEEEECCC
Confidence 110012357999999998854
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0014 Score=64.90 Aligned_cols=125 Identities=16% Similarity=0.210 Sum_probs=90.9
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEEc--CCcCCceeeeecCCCCCCeEeeEEEEEeeCC-----------CCC
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKIT--EDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP-----------ESQ 324 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~--~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-----------~~~ 324 (525)
....|.+.|+++.+++........|-|+.+.+. .+.....+|.++++|.+|.|+|.|.+.+..- ...
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 455677788888887755433345778887763 2233346899999999999999999998651 134
Q ss_pred eEEEEEEecCC-CCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 325 AVELAVYDWEQ-VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 325 ~L~i~v~d~~~-~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
.+.|++|++.. +++|.++|.+.+.|..|...-.....+++... .....|.|.+.++..
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEe
Confidence 58999999875 46788999999999999877666666666321 235678888887764
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.066 Score=47.50 Aligned_cols=89 Identities=22% Similarity=0.328 Sum_probs=60.1
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcCC-ceeeeecCCCCCCeEeeEEEEEee--C-CCCCeEEEEEEec
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDW 333 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~ 333 (525)
..++|+|+++.++.-.+ .+|-||.+.+ ++.... ...|+.+.. .++.|||...|.+. + +....|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 46889999999987543 4688888865 332221 123443333 67999999888765 2 2367899999997
Q ss_pred CCCC----CCCccEEEEEECccc
Q 009797 334 EQVG----KHDKMGMNVVPLKEL 352 (525)
Q Consensus 334 ~~~~----~d~~lG~~~i~L~~l 352 (525)
...+ ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 224699999888763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.028 Score=50.77 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=66.9
Q ss_pred ceEEEEEEeeecCCC-CCCCCcEEEEE--ECCeE----EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEccc
Q 009797 418 GLLVVIVHEAQDVEG-KHHTNPYARIL--FRGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSS 488 (525)
Q Consensus 418 g~L~V~v~~a~~L~~-~~~~dPyv~v~--l~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~ 488 (525)
..++|+|+++.++.. ....+-||++. .|++. ..|+.+....++.|||.++|.+. +.|.+..|.|.||+...
T Consensus 8 ~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 8 EKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred CCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecc
Confidence 368999999999986 44567788764 45543 26666665678999999888764 55667799999998753
Q ss_pred Cc-c-----------CCCCCccceEEEEEccccccc
Q 009797 489 RI-G-----------LLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 489 ~~-~-----------~~~~d~~lG~v~I~l~~~~~~ 512 (525)
.. + .-+.+..||.+.+.|-+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~ 123 (173)
T cd08693 88 KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQ 123 (173)
T ss_pred cccccccccccccccccCcceEEEEEeEEEEcccch
Confidence 11 0 011246999999999886443
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.027 Score=56.23 Aligned_cols=102 Identities=11% Similarity=0.190 Sum_probs=81.7
Q ss_pred EEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCC------CCCCeEEEEEEEcccCccCC
Q 009797 420 LVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEP------PTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 420 L~V~v~~a~~L~~~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~------~~~~~l~i~V~d~~~~~~~~ 493 (525)
+.|.|.+|++.+......-.+..+++|+...|..+.++..|.||....+.+... ..+..|+++++.-+.. -
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~---~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS---T 78 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC---C
Confidence 678999999999865667799999999999999999999999999999988743 1234899999988732 4
Q ss_pred CCCccceEEEEEcccc-ccchhhhcccCCCCC
Q 009797 494 HPKVLFQFYFIFYLVH-RFKQECCRMKNDPFR 524 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~-~~~~~~~~~~~~~~~ 524 (525)
+..+.+|++.++|.+. ....+.-..+..||+
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~ 110 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYK 110 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeE
Confidence 6789999999999987 112233358888986
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.27 Score=42.81 Aligned_cols=124 Identities=23% Similarity=0.334 Sum_probs=78.6
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecC-CCCCCeEeeEEEEEeeC--------CCCCeEEE
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRD--------PESQAVEL 328 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~--------~~~~~L~i 328 (525)
..-.+.+++++..+++. ....-||+...+.......+|.... .+..-.|||+|.+.+.- .....+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 34567899999999876 2233455555444331122333332 34457899999887651 12446889
Q ss_pred EEEecCCCCCCCccEEEEEECcccCCCC--CeeEEEecccccccCCCCCCceeeEEEEEEEEEecCC
Q 009797 329 AVYDWEQVGKHDKMGMNVVPLKELTPEE--PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE 393 (525)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~L~~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 393 (525)
.|+.....++...+|.+.++|.+..... .....+.+... ......|++++.+.+..+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--------~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--------KKSNATLSISISLSELRE 139 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--------CCCCcEEEEEEEEEECcc
Confidence 9988753333468999999999998753 44455554321 255678889988887643
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.2 Score=43.92 Aligned_cols=128 Identities=14% Similarity=0.192 Sum_probs=88.1
Q ss_pred CceeEEEEEEEeccCCcccCc--CCCCCcEEE--EEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCC----------
Q 009797 257 RPVGILHVKVVKAMNLKKKDL--LGASDPYVK--LKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE---------- 322 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~d~--~g~~dpyv~--v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~---------- 322 (525)
...-.|.++|..++-....-. .+..+.-.. +.+++++ ++|+.+..+.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QR---F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~l 82 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQR---FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTL 82 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCce---EecCCcccccCCCCCCcEEEEecccccccccchhHh
Confidence 345678888888774432111 033444444 4455655 58999999999999999999987431
Q ss_pred ---CCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCe--eEEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 323 ---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS--VKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 323 ---~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
.+.+.+.|.--|..+...++|+-.++.+.+...... ....++... . .......|-|.++++..|.
T Consensus 83 ls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~-~---~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 83 LSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGV-G---PESKVPVGILDLRLELLPN 152 (156)
T ss_pred hcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEecc-C---CCCccceeEEEEEEEeecC
Confidence 456888888877777778999999999888766543 555555321 1 1123578999999999885
|
|
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.024 Score=54.33 Aligned_cols=119 Identities=17% Similarity=0.245 Sum_probs=79.8
Q ss_pred CCCceeEEEEEEEeccCCcccCc--CCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEe
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDL--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 332 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d 332 (525)
.....|+|.+++..+++|..... .-.-+-||++..+.+. ..+|.+.....--.|.|+|...+.+ ...+.+-||.
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 34568999999999999975432 2356899999987554 2466666555556799999998875 4678999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCC-CeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEE-PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
|+.-.++++.-...+.+..+.... .+...+. -.++|++.+++.+.
T Consensus 122 W~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~------------lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 122 WPPQRRHKLCHLGLLEAFVVDRQSPDRVVALY------------LEPRGQPPLRLPLA 167 (442)
T ss_pred cCchhhccccccchhhhhhhhhcCCcceeeee------------cccCCCCceecccC
Confidence 987666765433344444443322 2333332 35678888877653
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.026 Score=61.11 Aligned_cols=93 Identities=18% Similarity=0.149 Sum_probs=71.1
Q ss_pred CcceEEEEEEeeecCCCCCCCCcEEEEEECC-------eEEEeeeec-CCCCCcccc-eEEEEecCCCCCCeEEEEEEEc
Q 009797 416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRG-------EERKTKHVK-KNRDPRWEE-EFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~-------~~~kT~v~~-~t~nP~wne-~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
-.+.+.|+|++++=|.. .....||.|.+-| +..+|+++. ++.||+|+| .|.|.=--.+.-.+|.|.|++.
T Consensus 701 IA~t~sV~VISgqFLSd-rkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSD-RKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred EEeeEEEEEEeeeeccc-cccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 45678999999988876 3467999999865 234888877 569999996 6777632222346999999998
Q ss_pred ccCccCCCCCccceEEEEEccccccchhhhc
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLVHRFKQECCR 517 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~ 517 (525)
. ..+||+-.++++.+..|.++..
T Consensus 780 g--------gK~ig~RIlpvd~l~~GYrhv~ 802 (1189)
T KOG1265|consen 780 G--------GKFIGQRILPVDGLNAGYRHVC 802 (1189)
T ss_pred C--------CceeeeeccchhcccCcceeEE
Confidence 4 6899999999999988876543
|
|
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.089 Score=46.74 Aligned_cols=93 Identities=25% Similarity=0.376 Sum_probs=60.8
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcC-CceeeeecCCCCCCeEeeEEEEEee--C-CCCCeEEEEEEec
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKL-PSKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDW 333 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~-~~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~ 333 (525)
..++|++....++...+ ....+-||.+.+ ++... ....|.......++.|||...|.+. + +....|.+++|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35678888888776521 234566777755 33321 2223433333468999999988764 2 2367899999998
Q ss_pred CCCC--CCCccEEEEEECcccC
Q 009797 334 EQVG--KHDKMGMNVVPLKELT 353 (525)
Q Consensus 334 ~~~~--~d~~lG~~~i~L~~l~ 353 (525)
+..+ ++..||.+.++|-+-.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCCCCcceEEEEEeEEeEccc
Confidence 7544 4678999999987743
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.084 Score=47.72 Aligned_cols=91 Identities=18% Similarity=0.277 Sum_probs=60.1
Q ss_pred eEEEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcC-CceeeeecCCCCCCeEeeEEEEEee--C-CCCCeEEEEEEec
Q 009797 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKL-PSKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDW 333 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~-~~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~ 333 (525)
..++|+|+++.++... ....+-||.+.+ ++... ....|+.+..+.++.|||.+.|.+. + +....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 4689999999999862 234667777654 43332 1235555554567999999988764 2 2367899999997
Q ss_pred CCCC----------------CCCccEEEEEECccc
Q 009797 334 EQVG----------------KHDKMGMNVVPLKEL 352 (525)
Q Consensus 334 ~~~~----------------~d~~lG~~~i~L~~l 352 (525)
.... .+..||.+.++|-+-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5322 135777777776653
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.13 Score=45.62 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=62.2
Q ss_pred ceEEEEEEeeecCCC--CCCCCcEEEEEE--CCeE----EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcc
Q 009797 418 GLLVVIVHEAQDVEG--KHHTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVS 487 (525)
Q Consensus 418 g~L~V~v~~a~~L~~--~~~~dPyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~ 487 (525)
..++|.++...++.. ....+-||++.+ +++. ..|.......++.|||..+|.+. +.+.+..|.|.||+.+
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 357788888887764 234566776644 4442 24444444478999999998854 4566779999999986
Q ss_pred cCccCCCCCccceEEEEEccccc
Q 009797 488 SRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 488 ~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
... ...+..||.+.++|-+..
T Consensus 88 ~~~--~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 88 EPG--SKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred cCC--CCcceEEEEEeEEeEccc
Confidence 421 124689999999998853
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.25 Score=38.78 Aligned_cols=85 Identities=22% Similarity=0.345 Sum_probs=59.7
Q ss_pred CCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCCCCee
Q 009797 280 ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSV 359 (525)
Q Consensus 280 ~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~ 359 (525)
-++-.+++.+++... .+|.-+.. .+..|++.|.+.+.. +..|.|.||-+|- ..+.|...+-|++... .
T Consensus 8 ~~eV~avLklDn~~V--gqT~Wk~~-s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~~----~ 75 (98)
T cd08687 8 CSEVSAVLKLDNTVV--GQTQWKPK-SNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDERH----E 75 (98)
T ss_pred ccceEEEEEEcCeEE--eecccccc-ccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhcc----c
Confidence 367788898886543 45655433 478899999999964 5789999998763 4577888888887322 2
Q ss_pred EEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 360 KTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
..++ -.+.|.+...++|
T Consensus 76 ~~~~------------lepqg~l~~ev~f 92 (98)
T cd08687 76 VQLD------------MEPQLCLVAELTF 92 (98)
T ss_pred ceec------------cccccEEEEEEEe
Confidence 2222 3567888888877
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.057 Score=58.65 Aligned_cols=90 Identities=22% Similarity=0.370 Sum_probs=68.2
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc----CCceeeeecC-CCCCCeEee-EEEEE-eeCCCCCeEEEEEE
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKH-KNLNPEWNE-EYNFT-VRDPESQAVELAVY 331 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~v~~-~t~nP~w~e-~f~f~-v~~~~~~~L~i~v~ 331 (525)
.+.+.|+|+++.=|..++ ...||.|.+-+-. ...++|++.. ++.||+|+| .|.|. |--++-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 578899999999997654 4589999985422 2346777765 778999996 46664 33345578999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCC
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEE 356 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~ 356 (525)
+.+ ..++|+=.+|+..+..+-
T Consensus 778 eEg----gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ccC----CceeeeeccchhcccCcc
Confidence 975 469999999999998874
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.17 Score=45.69 Aligned_cols=94 Identities=17% Similarity=0.230 Sum_probs=62.7
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcCC-ceeeeecC----CCCCCeEeeEEEEEee--C-CCCCeEEE
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKH----KNLNPEWNEEYNFTVR--D-PESQAVEL 328 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~kT~v~~----~t~nP~w~e~f~f~v~--~-~~~~~L~i 328 (525)
...+.|+|.++.+++........|-|+.+.+ ++.... ...|+... -...+.|||...|.+. + +....|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 4568899999999987654445788888865 333221 12333211 1235779999888774 2 23668999
Q ss_pred EEEecCCCC---------CCCccEEEEEECccc
Q 009797 329 AVYDWEQVG---------KHDKMGMNVVPLKEL 352 (525)
Q Consensus 329 ~v~d~~~~~---------~d~~lG~~~i~L~~l 352 (525)
++|+....+ .+..||.+.++|-+-
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999976543 356899999888764
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.028 Score=55.86 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=72.6
Q ss_pred CcceEEEEEEeeecCCCC---CCCCcEEEEEEC---C--eEEEeeeecCCCCCcccceEEEEecCCCC----------CC
Q 009797 416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFR---G--EERKTKHVKKNRDPRWEEEFQFMLEEPPT----------ND 477 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~---~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~----------~~ 477 (525)
....|.+.|.++++++.. ...|.|+++.+. + ++.+|.+++.|.+|.|+|.|...+...+. ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 455678888889888753 357889998873 2 34489999999999999999999986321 12
Q ss_pred eEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 478 RLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 478 ~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
-+.|+++.+. |++++|.++|.+.|.|.-+...
T Consensus 445 g~kfeifhkg---gf~rSdkl~gt~nikle~Len~ 476 (523)
T KOG3837|consen 445 GKKFEIFHKG---GFNRSDKLTGTGNIKLEILENM 476 (523)
T ss_pred CeeEEEeecc---ccccccceeceeeeeehhhhcc
Confidence 5889999985 3478999999999999876443
|
|
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.15 Score=45.32 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=52.8
Q ss_pred CCCcEEEEEE--CCeE----EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcccCccCCCCCccceEEEEEc
Q 009797 435 HTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFY 506 (525)
Q Consensus 435 ~~dPyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l 506 (525)
.+|-||++.+ +++. ..|+.+.-+..+.|||-.+|.|. +.+.+..|.|+|||... .+....+|.+.++|
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~----~~~~~~vg~~~~~l 104 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG----TGKAVPFGGTTLSL 104 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC----CCCceEEEEEEEee
Confidence 4677777754 4442 26666666778899998888875 44567799999999864 23577999999999
Q ss_pred ccc
Q 009797 507 LVH 509 (525)
Q Consensus 507 ~~~ 509 (525)
-+.
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 885
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.17 Score=45.00 Aligned_cols=74 Identities=22% Similarity=0.364 Sum_probs=51.8
Q ss_pred CCCCcEEEEEE--cCCcC-CceeeeecCCCCCCeEeeEEEEEee--C-CCCCeEEEEEEecCCCCCCCccEEEEEECccc
Q 009797 279 GASDPYVKLKI--TEDKL-PSKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352 (525)
Q Consensus 279 g~~dpyv~v~~--~~~~~-~~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l 352 (525)
..+|-||.+.+ ++... ....|+.+.-+..+.|||...|.+. + +....|.|+||+.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34677888765 22221 1125555555667899999888875 2 23678999999987666677999999988764
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.34 Score=43.79 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=45.0
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcCCceeeeecCCCCCCeEeeEEEEEee--C-CCCCeEEEEEEecC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDWE 334 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~~ 334 (525)
.++|+|+++..+ ..+......-||++.+ ++......+|+.+.-+.++.|||...|.+. + +....|.|+||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 467788888643 2222222335666543 333222235666666778999998888765 2 23678999999974
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.58 Score=42.32 Aligned_cols=93 Identities=12% Similarity=0.166 Sum_probs=59.1
Q ss_pred eEEEEEEeeecCCCCCC--CCcEEEEE--ECCeE---EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcccC
Q 009797 419 LLVVIVHEAQDVEGKHH--TNPYARIL--FRGEE---RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSR 489 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~~~--~dPyv~v~--l~~~~---~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~ 489 (525)
.++++|+++.++..... ..-||++. .+++. .+|+.+.-+.+|.|||-++|.+. +.+.+..|.|.||+....
T Consensus 11 ~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~ 90 (178)
T cd08399 11 KFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAP 90 (178)
T ss_pred CEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecC
Confidence 46777888764433222 23455553 34432 26666666788999998888865 445667999999997321
Q ss_pred c------c------CCCCCccceEEEEEcccccc
Q 009797 490 I------G------LLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 490 ~------~------~~~~d~~lG~v~I~l~~~~~ 511 (525)
. | .-..+..||.+.+.|-+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~ 124 (178)
T cd08399 91 ALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF 124 (178)
T ss_pred cccccccccccccccccccceEEEEEEEEEcCCC
Confidence 0 0 00125689999999988543
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.65 Score=40.79 Aligned_cols=89 Identities=20% Similarity=0.285 Sum_probs=61.5
Q ss_pred CcceEEEEEEeeecCCC-----CCCCCc--EEEEEECCeEEEeeeecCCCCCcccceEEEEecCCC------------CC
Q 009797 416 GGGLLVVIVHEAQDVEG-----KHHTNP--YARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP------------TN 476 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~-----~~~~dP--yv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~------------~~ 476 (525)
....|++.|..++-.-. .+..+. ++-+.+++++++|+.+..+.+|.|+|.|-|.++... ..
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 56678889888874321 023333 444556899999999999999999999999998652 23
Q ss_pred CeEEEEEEEcccCccCCCCCccceEEEEEccc
Q 009797 477 DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLV 508 (525)
Q Consensus 477 ~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~ 508 (525)
+.+++-|.-.+. .+...++|+-.+++..
T Consensus 87 ~pihivli~~d~----~~~~~Lv~s~~ldWR~ 114 (156)
T PF15627_consen 87 DPIHIVLIRTDP----SGETTLVGSHFLDWRK 114 (156)
T ss_pred CceEEEEEEecC----CCceEeeeeceehHHH
Confidence 478888877664 2334666666655443
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.81 Score=41.31 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=62.6
Q ss_pred cceEEEEEEeeecCCCC---CCCCcEEEEEE--CCeEE----Eeeeec----CCCCCcccceEEEEec--CCCCCCeEEE
Q 009797 417 GGLLVVIVHEAQDVEGK---HHTNPYARILF--RGEER----KTKHVK----KNRDPRWEEEFQFMLE--EPPTNDRLHV 481 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~---~~~dPyv~v~l--~~~~~----kT~v~~----~t~nP~wne~f~f~v~--~~~~~~~l~i 481 (525)
...+.|+|.++.+++.. ...|-|+++.+ +++.. .|+... ....+.|||-.+|.+. +.+.+..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 45688999999999873 24777888754 44432 444322 2346779998888765 4456679999
Q ss_pred EEEEcccCc-c----CCCCCccceEEEEEcccc
Q 009797 482 EVCSVSSRI-G----LLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 482 ~V~d~~~~~-~----~~~~d~~lG~v~I~l~~~ 509 (525)
.+|+..... + .-..+..||.+.+.|-+.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999976420 0 001357999999999885
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.62 Score=40.59 Aligned_cols=55 Identities=22% Similarity=0.409 Sum_probs=40.0
Q ss_pred eeeecCCC-CCCeEeeEEEEEee--C-CCCCeEEEEEEecCCCCCC----CccEEEEEECccc
Q 009797 298 KTTVKHKN-LNPEWNEEYNFTVR--D-PESQAVELAVYDWEQVGKH----DKMGMNVVPLKEL 352 (525)
Q Consensus 298 kT~v~~~t-~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~~~~~~d----~~lG~~~i~L~~l 352 (525)
.|+...-+ .++.|||...|.+. + +....|.|+||+.+..... ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 55555555 79999999888875 2 3467899999998765554 6899999998776
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.7 Score=40.25 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=40.8
Q ss_pred EeeeecCC-CCCcccceEEEEe--cCCCCCCeEEEEEEEcccCccCCCCC----ccceEEEEEcccc
Q 009797 450 KTKHVKKN-RDPRWEEEFQFML--EEPPTNDRLHVEVCSVSSRIGLLHPK----VLFQFYFIFYLVH 509 (525)
Q Consensus 450 kT~v~~~t-~nP~wne~f~f~v--~~~~~~~~l~i~V~d~~~~~~~~~~d----~~lG~v~I~l~~~ 509 (525)
.|+.+..+ .++.|||.++|.+ .+.+.+..|.|.|++.+.. ..+ ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~----~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK----KKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS----TTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC----CccccceeEEEEEEEEeECC
Confidence 56666666 8999999888875 4556777999999998752 223 7999999999885
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=91.44 E-value=1.9 Score=39.26 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=42.1
Q ss_pred CceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEecCCCC--CCCccEEEEEECc
Q 009797 295 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVG--KHDKMGMNVVPLK 350 (525)
Q Consensus 295 ~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~~--~d~~lG~~~i~L~ 350 (525)
..++|.+...+.+|.|+|++.+.+... ....|.|++++..... ....+|.+-+||-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 346888999999999999999988643 3567889888754322 1257888888884
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=91.32 E-value=3 Score=37.48 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=53.7
Q ss_pred CCCcEEEEEEcCCcCCceeeeecC--CCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCCCCccEEEEEECcccCCC
Q 009797 280 ASDPYVKLKITEDKLPSKKTTVKH--KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 355 (525)
Q Consensus 280 ~~dpyv~v~~~~~~~~~~kT~v~~--~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~ 355 (525)
+..-|+++.++++.. .+|+... ....-.|+|.|.+.+... -..|.++||.... ..+..|+++.+|+-.....
T Consensus 36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 446799999987664 4555443 333456889999999764 5789999999886 6788999999998765543
|
|
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=90.03 E-value=3 Score=38.12 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=42.0
Q ss_pred CceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEecCCC-CC---CCccEEEEEECc
Q 009797 295 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQV-GK---HDKMGMNVVPLK 350 (525)
Q Consensus 295 ~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~-~~---d~~lG~~~i~L~ 350 (525)
...+|.+...+.+|.|+|++.+.+... ....|.|++++.... .+ ...+|.+-+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 346888888899999999999988632 366899999886432 12 246898888885
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=87.46 E-value=3.6 Score=37.57 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=34.6
Q ss_pred ceeeeecCCCCCCeEeeEEEEEeeCCC--CCeEEEEEEecCCCCC---CCccEEEEEECcc
Q 009797 296 SKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVYDWEQVGK---HDKMGMNVVPLKE 351 (525)
Q Consensus 296 ~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~d~~~~~~---d~~lG~~~i~L~~ 351 (525)
...|.+...+.+|.|+|+|.+.+.... ...|.|++++...-.+ +..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 467888888899999999999987432 5679999998754221 1689999999988
|
|
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=86.69 E-value=3 Score=33.87 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=45.7
Q ss_pred EEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcCC-ceeeeecCCCCCCeEeeEEEEEee--C-CCCCeEEEEEEecC
Q 009797 262 LHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDWE 334 (525)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d~~ 334 (525)
+.+++..+.+.........++-||.+.+ ++.... ...|+.+.-...+.|||...|.+. + +....|.+++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566666666654432223578888865 333221 124555555556899999888764 2 23678999999864
|
Outlier of C2 family. |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=83.84 E-value=3.4 Score=37.70 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=35.2
Q ss_pred EEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccc
Q 009797 449 RKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLV 508 (525)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~ 508 (525)
..|.+..++.+|.|+|+|.+.++..... .-|.|++++.....+ -.++..+|.+.++|.+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~-~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKES-KEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSS-S-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccc-cCccceeEEEEEEeee
Confidence 4788889999999999999999875333 378888888754311 1112799999999988
|
|
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=83.28 E-value=7.2 Score=31.60 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=45.4
Q ss_pred EEEEEEeeecCCCCC---CCCcEEEEEE--CCeE----EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEccc
Q 009797 420 LVVIVHEAQDVEGKH---HTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSS 488 (525)
Q Consensus 420 L~V~v~~a~~L~~~~---~~dPyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~ 488 (525)
+.+.+..+.+.+... .++-||++.+ +++. ..|+.+.-...+.|||-.+|.+. +.+.+..|.+.||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 455666666665421 2367777754 4443 25665555667899998888765 44566799999999753
|
Outlier of C2 family. |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=80.17 E-value=6.2 Score=36.00 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=41.9
Q ss_pred EEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccc
Q 009797 449 RKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLV 508 (525)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~ 508 (525)
.+|.+..++.+|.|+|++...++..... .-|.++++...... -.....+|..-++|.+
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~--k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKD--KGEKKLFGFSFVPLMR 113 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeecc--CCCCCceEEEEEeecc
Confidence 4889999999999999999999865333 36777776653210 0113679999999976
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 525 | ||||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 1e-13 | ||
| 3m7f_B | 176 | Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX | 1e-12 | ||
| 3b7y_A | 153 | Crystal Structure Of The C2 Domain Of The E3 Ubiqui | 4e-12 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 9e-12 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 4e-11 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 4e-11 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 3e-10 | ||
| 1rsy_A | 152 | Structure Of The First C2-domain Of Synaptotagmin I | 9e-10 | ||
| 3f04_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Len | 1e-09 | ||
| 3f00_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Wit | 1e-09 | ||
| 1byn_A | 128 | Solution Structure Of The Calcium-Bound First C2-Do | 1e-09 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 2e-09 | ||
| 2uzp_A | 144 | Crystal Structure Of The C2 Domain Of Human Protein | 1e-08 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 1e-08 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 1e-08 | ||
| 3pfq_A | 674 | Crystal Structure And Allosteric Activation Of Prot | 1e-08 | ||
| 1a25_A | 149 | C2 Domain From Protein Kinase C (Beta) Length = 149 | 3e-08 | ||
| 2cm5_A | 166 | Crystal Structure Of The C2b Domain Of Rabphilin Le | 4e-08 | ||
| 4dnl_A | 140 | Crystal Structure Of A C2 Domain Of A Protein Kinas | 6e-08 | ||
| 2cm6_A | 166 | Crystal Structure Of The C2b Domain Of Rabphilin3a | 6e-08 | ||
| 3rpb_A | 140 | The C2b-Domain Of Rabphilin: Structural Variations | 7e-08 | ||
| 1tjm_A | 159 | Crystallographic Identification Of Sr2+ Coordinatio | 6e-07 | ||
| 2lha_A | 151 | Solution Structure Of C2b With Ip6 Length = 151 | 6e-07 | ||
| 1k5w_A | 152 | Three-Dimensional Structure Of The Synaptotagmin 1 | 6e-07 | ||
| 1wfj_A | 136 | C2 Domain-Containing Protein From Putative Elicitor | 1e-05 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 1e-05 | ||
| 2jqz_A | 131 | Solution Structure Of The C2 Domain Of Human Smurf2 | 2e-05 | ||
| 3pyc_A | 132 | Crystal Structure Of Human Smurf1 C2 Domain Length | 2e-05 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 2e-05 | ||
| 2chd_A | 142 | Crystal Structure Of The C2a Domain Of Rabphilin-3a | 2e-05 | ||
| 1w15_A | 153 | Rat Synaptotagmin 4 C2b Domain In The Presence Of C | 2e-05 | ||
| 2k3h_A | 140 | Structural Determinants For Ca2+ And Pip2 Binding B | 3e-05 | ||
| 2enp_A | 147 | Solution Structure Of The First C2 Domain From Huma | 6e-05 | ||
| 3n5a_A | 138 | Synaptotagmin-7, C2b-Domain, Calcium Bound Length = | 3e-04 | ||
| 2dmg_A | 142 | Solution Structure Of The Third C2 Domain Of Kiaa12 | 8e-04 |
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176 | Back alignment and structure |
|
| >pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152 | Back alignment and structure |
|
| >pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143 | Back alignment and structure |
|
| >pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143 | Back alignment and structure |
|
| >pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 | Back alignment and structure |
|
| >pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149 | Back alignment and structure |
|
| >pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166 | Back alignment and structure |
|
| >pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140 | Back alignment and structure |
|
| >pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166 | Back alignment and structure |
|
| >pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140 | Back alignment and structure |
|
| >pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159 | Back alignment and structure |
|
| >pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151 | Back alignment and structure |
|
| >pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152 | Back alignment and structure |
|
| >pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2 Length = 131 | Back alignment and structure |
|
| >pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain Length = 132 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142 | Back alignment and structure |
|
| >pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153 | Back alignment and structure |
|
| >pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140 | Back alignment and structure |
|
| >pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK Protein Length = 147 | Back alignment and structure |
|
| >pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138 | Back alignment and structure |
|
| >pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228 Protein Length = 142 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 155 bits (392), Expect = 6e-45
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 10/170 (5%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI---TEDKLPSKKTTVKHKNLNPEWN 311
+ ++ VKV+ + L KKD+LGASDPYV++ + L S +T K+LNP+WN
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 312 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 371
EE F V P+ + V+D ++ + D +G VPL L E P ++ K+ L+
Sbjct: 63 EEILFRV-LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH 121
Query: 372 -DGQNEKSRGQLVVEFIYKPFKEE-----DLPKSFEESQTVQKAPENTPA 415
+ +G L ++ Y P D + E V P+
Sbjct: 122 PRSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPDAATH 171
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-06
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 418 GLLVVIVHEAQDVEGKHHTN---PYARILFRGEER------KTKHVKKNRDPRWEEEFQF 468
++ V V + K PY R+ +TK +KK+ +P+W EE F
Sbjct: 8 RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67
Query: 469 MLEEPPTNDRLHVEVC 484
+ P R+ EV
Sbjct: 68 RV--LPQRHRILFEVF 81
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 6e-45
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 311
S P G L V +V A L+ D L DPYV+L K + PEWN
Sbjct: 2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ--KSNVAEGMGTTPEWN 59
Query: 312 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 371
E + FTV + ++ ++ ++D + + D +G +PL+ + E + N
Sbjct: 60 ETFIFTVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGS-------IPPTAYN 111
Query: 372 DGQNEKSRGQLVVEFIYKPFKEED 395
++E+ +G++ V +KP
Sbjct: 112 VVKDEEYKGEIWVALSFKPSGPSS 135
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-10
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 418 GLLVVIVHEAQDVEGKHHT---NPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEP 473
G L V++ A+ +E +PY ++ R +++K+ + P W E F F + E
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 474 PTNDRLHVEV 483
L ++
Sbjct: 70 --TTELKAKI 77
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 3e-44
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWN 311
I+ V+V+ + L KKD+LGASDPYV++ + + L S +T K+LNP+WN
Sbjct: 15 DEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWN 74
Query: 312 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 371
EE F V P+ + V+D ++ + D +G VPL L E P ++ K+ L+
Sbjct: 75 EEILFRV-HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLH 133
Query: 372 D-GQNEKSRGQLVVEFIYKP 390
+ +G L ++ Y P
Sbjct: 134 PRSHKSRVKGYLRLKMTYLP 153
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-07
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 417 GGLLVVIVHEAQDVEGKHHTN---PYARILFRGEER------KTKHVKKNRDPRWEEEFQ 467
++ V V + K PY R+ +TK +KK+ +P+W EE
Sbjct: 19 SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEIL 78
Query: 468 FMLEEPPTNDRLHVEVC 484
F + P RL EV
Sbjct: 79 FRV--HPQQHRLLFEVF 93
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 4e-44
Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 40/242 (16%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 314
Y L V +++A L D+ G SDPYVK+ + DK +T V K LNP +NE++
Sbjct: 14 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 73
Query: 315 NFTV--RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND 372
F V + + + +AVYD+++ KHD +G VP+ + + + DL
Sbjct: 74 TFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK--- 130
Query: 373 GQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQD--- 429
+ ++ G + Y P G L V++ EA++
Sbjct: 131 -EEQEKLGDICFSLRYVP-------------------------TAGKLTVVILEAKNLKK 164
Query: 430 VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDR-LHVEV 483
++ ++PY +I R +++KT K +P + E F F + + V V
Sbjct: 165 MDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 224
Query: 484 CS 485
Sbjct: 225 LD 226
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 1e-21
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 245 EVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVK 302
++ + S Y G L V +++A NLKK D+ G SDPYVK+ + ++ +L KKTT+K
Sbjct: 135 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK 194
Query: 303 HKNLNPEWNEEYNFTVRDPESQAV--ELAVYDWEQVGKHDKMGMNVVPLKELTPE 355
LNP +NE ++F V + Q V + V D++++GK+D +G V E
Sbjct: 195 KNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 249
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 9e-42
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
G+L V V A N+ K G DP V + ++K KKT LNP WNE F +R
Sbjct: 7 GMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILEFDLR 62
Query: 320 DPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 376
S ++ + V D+E +G++ +G V LK+LT ++ L+ L + + +
Sbjct: 63 GIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLIS---LLNEKGQ 119
Query: 377 KSRGQLVVEFIYKPFKEE 394
+ + + Y P
Sbjct: 120 DTGATIDLVIGYDPPSGP 137
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 2e-12
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 413 TPAGGGLLVVIVHEAQDVEGKHH--TNPYARILFRGEERKTKHVKKNRDPRWEEEFQFML 470
+ G+L VIV A ++ +P ++F+ E++KTK V +P W E +F L
Sbjct: 2 SSGSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDL 61
Query: 471 EEPP--TNDRLHVEVC 484
P + L + V
Sbjct: 62 RGIPLDFSSSLGIIVK 77
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 3e-40
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 311
S + VGIL VKV+KA +L D G SDP+ L++ D+L +T +KNLNPEWN
Sbjct: 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRL---QTHTVYKNLNPEWN 61
Query: 312 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 371
+ + F ++D +E+ V+D + D +G +PL + +P+ LKN DL
Sbjct: 62 KVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYV---LKNKDLE 117
Query: 372 DGQNEKSRGQLVVEFIY 388
+G + +E
Sbjct: 118 Q----AFKGVIYLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-10
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 418 GLLVVIVHEAQDVEGKHHT---NPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP 474
G+L V V +A D+ + +P+ + + +T V KN +P W + F F +++
Sbjct: 13 GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI- 71
Query: 475 TNDRLHVEV 483
+D L V V
Sbjct: 72 -HDVLEVTV 79
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-37
Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 14/128 (10%)
Query: 262 LHVKVVKAMNLKK---KDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 318
V V++A + K D+L DPYV+L I+ K+T + ++NP WNE + F +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 319 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKS 378
+ +E+ + D + +G + + E N+ +
Sbjct: 65 DPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIF----------NQVT 113
Query: 379 RGQLVVEF 386
L +
Sbjct: 114 EMVLEMSL 121
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 8e-08
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 417 GGLLVVIVHEAQDVEGKHHTN------PYARILFRG---EERKTKHVKKNRDPRWEEEFQ 467
V+V A V + PY + ++T+H + +P W E F+
Sbjct: 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61
Query: 468 FMLEEPPTNDRLHVEVC 484
F+L+ N L + +
Sbjct: 62 FILDPNQEN-VLEITLM 77
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 2e-37
Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 41/243 (16%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 314
Y L V++++A++L KD G SDPYVK+ + D+ +T V K LNP +NE +
Sbjct: 15 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETF 74
Query: 315 NFTV--RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND 372
F+V + + + +VYD+++ +HD +G V+ E+P + L D+ +
Sbjct: 75 QFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL----WRDILE 130
Query: 373 GQNEK-SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVE 431
G +EK G+L Y P GLL V + +A +++
Sbjct: 131 GGSEKADLGELNFSLCYLPT-------------------------AGLLTVTIIKASNLK 165
Query: 432 GKHHT---NPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFML-EEPPTNDRLHVE 482
T +PY + R ++RKT K +P + E F + E N L +
Sbjct: 166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 225
Query: 483 VCS 485
V
Sbjct: 226 VVD 228
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 9e-23
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
Y G+L V ++KA NLK DL G SDPYVK + + +L +KT++K LNP +NE
Sbjct: 147 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNE 206
Query: 313 EYNFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
F V E+ + +AV D++ +G ++ +G+ V + P
Sbjct: 207 ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG 252
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 3e-33
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 321
+ + V+ A NL KKD DP+ K+ + T L+P+WN+ Y+ V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQ-CHSTDTVKNTLDPKWNQHYDLYVGKT 65
Query: 322 ESQAVELAVYDWEQVGKHDK---MGMNVVPLKELTP-EEPSVKTLDLLKNMDLNDGQNEK 377
+S + V++ +++ K +G + ++ ++ + LDL K ++ +D +
Sbjct: 66 DSITIS--VWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK-LNPSD--TDA 120
Query: 378 SRGQLVVEF 386
RGQ+VV
Sbjct: 121 VRGQIVVSL 129
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 7e-08
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
Query: 415 AGGGLLVVIVHEAQ-----DVEGKHHTNPYARILFRGEE--RKTKHVKKNRDPRWEEEFQ 467
+ + + V A+ D +P+A+I+ G T VK DP+W + +
Sbjct: 2 SEFIKIRLTVLCAKNLAKKDFFRL--PDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYD 59
Query: 468 FMLEEPPTNDRLHVEVC 484
+ + D + + V
Sbjct: 60 LYVGK---TDSITISVW 73
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 7e-33
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 314
Y L VK++KA L KD G SDP+VK+ + DK +T VK KNLNP WNE +
Sbjct: 21 YNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETF 80
Query: 315 NF---TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
F + + L V D+++ ++D +G +PL ++ + DL
Sbjct: 81 LFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 6e-08
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF---RGEERKTKHVKKNRDPRWEEEFQFML- 470
L V + +AQ+ + ++P+ +I + + +TK +KN +P W E F F
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 471 -EEPPTNDRLHVEVC 484
E L+++V
Sbjct: 86 PYEKVVQRILYLQVL 100
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 6e-32
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 314
Y L V +++A L D+ G SDPYVK+ + DK +T V K LNP +NE++
Sbjct: 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 88
Query: 315 NFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365
F V + + + +AVYD+++ KHD +G VP+ + + + DL
Sbjct: 89 TFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-08
Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF---RGEERKTKHVKKNRDPRWEEEFQFMLE 471
L+V + +A + ++ ++PY ++ + ++ +TK +K +P + E+F F +
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 472 EPPTNDR-LHVEVCS 485
+ L + V
Sbjct: 94 YSELGGKTLVMAVYD 108
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 7e-32
Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 8/153 (5%)
Query: 235 ANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL 294
N+Y + L + L + V+ A + K PYV++ +
Sbjct: 12 ENLYFQGMSDSGSQLGSMGSLTMK-SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS- 69
Query: 295 PSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP 354
KKT + +P+W + V + V+ + + +G + + E
Sbjct: 70 --KKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLLGTAALDIYET-L 124
Query: 355 EEPSVKTLDLLKNMDL-NDGQNEKSRGQLVVEF 386
+ ++K +++ + L D + ++ G L +
Sbjct: 125 KSNNMKLEEVVVTLQLGGDKEPTETIGDLSICL 157
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 2e-14
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 403 SQTVQKAPENTPAGGGLLVVIVHEAQDVEGKH---HTNPYARILFRGEERKTKHVKKNRD 459
Q + L + V A+ E K +PY + G+ +KT+
Sbjct: 21 DSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNS 80
Query: 460 PRWEEEFQFMLEEPPTNDRLHVEV 483
P+W++ ++ +LH V
Sbjct: 81 PKWKQPLTVIVTP---VSKLHFRV 101
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 3e-31
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
Y + L +++A LK D G +DPYVKL + K +T NP WNE
Sbjct: 24 YDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNE 83
Query: 313 EYNF---TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNM 368
+ T D + + + ++V D ++ G ++ +G LK+L + + L + +
Sbjct: 84 TLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVI 142
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-07
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 417 GGLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 468
L + A+ ++ +PY ++ + + +TK ++ R+P W E Q+
Sbjct: 28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87
Query: 469 ML--EEPPTNDRLHVEVC 484
EE L + VC
Sbjct: 88 HGITEEDMQRKTLRISVC 105
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 5e-31
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 22/142 (15%)
Query: 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYN 315
+ + + VV A L+ KD G+SDPYV +++ + K K+T + NLNP W E ++
Sbjct: 13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNLNPVWEENFH 69
Query: 316 FTVRDPESQAVELAVYDW-----------EQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
F + S +++ V D + D +G ++ ++ L+ E LD
Sbjct: 70 FECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLD- 127
Query: 365 LKNMDLNDGQNEKSRGQLVVEF 386
G + +
Sbjct: 128 ------KRTDKSAVSGAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 2e-11
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 402 ESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHT---NPYARILFRGEERKTKHVKKNR 458
E Q + T + + V AQ ++ K T +PY + +++TK + N
Sbjct: 1 EFAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNL 60
Query: 459 DPRWEEEFQFMLEEPPTNDRLHVEV 483
+P WEE F F +DR+ V V
Sbjct: 61 NPVWEENFHFECHNS--SDRIKVRV 83
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-30
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 314
Y L V +++A L D+ G SDPYVK+ + DK +T V K LNP +NE++
Sbjct: 37 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 96
Query: 315 NFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365
F V + + + +AVYD+++ KHD +G VP+ + + + DL
Sbjct: 97 TFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-08
Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 32/140 (22%)
Query: 353 TPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPEN 412
+P L ++ + + E+ G+L Y +
Sbjct: 2 SPGISGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQ------------------ 43
Query: 413 TPAGGGLLVVIVHEAQD---VEGKHHTNPYARILF---RGEERKTKHVKKNRDPRWEEEF 466
L+V + +A + ++ ++PY ++ + ++ +TK +K +P + E+F
Sbjct: 44 -------LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 96
Query: 467 QFMLEEPPTNDR-LHVEVCS 485
F + + L + V
Sbjct: 97 TFKVPYSELGGKTLVMAVYD 116
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-28
Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 7/153 (4%)
Query: 249 LDPSKAYRR---PVGILHVKVVKAMNLKKK---DLLGASDPYVKLKITEDKLPSKKTTVK 302
+DP + V V++A + K D+L DPYV+L I+ K+T
Sbjct: 4 IDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF 63
Query: 303 HKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTL 362
+ ++NP WNE + F + + +E+ + D V + +G + + E
Sbjct: 64 NNDINPVWNETFEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPF 122
Query: 363 DLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEED 395
+ ++ + + + F +E
Sbjct: 123 IFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEK 155
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 418 GLLVVIVHEAQDVEGKHH------TNPYARILFRG---EERKTKHVKKNRDPRWEEEFQF 468
V+V A V +PY + ++T+H + +P W E F+F
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77
Query: 469 MLEEPPTNDRLHVEVCS 485
+L+ N L + +
Sbjct: 78 ILDPNQEN-VLEITLMD 93
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-28
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFT 317
+L V V A NL D G SDPYVKLK+ D +KT +LNPEWNE + F
Sbjct: 31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90
Query: 318 VRDPESQAV-ELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS 358
+++ + + ++DW+ ++D MG + EL
Sbjct: 91 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVD 132
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-09
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 417 GGLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 468
+L+V+V +A++ ++ ++PY ++ ++KTK +K + +P W E F+F
Sbjct: 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89
Query: 469 MLEEPPTNDRLHVEV 483
L+E + RL VE+
Sbjct: 90 QLKESDKDRRLSVEI 104
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 4e-27
Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 14/134 (10%)
Query: 246 VPILDPSKAYRRPVGILHVKVVKAMNLKKKDL----------LGASDPYVKLKITEDKLP 295
VP S + G L V++ +A+ L+ DPY+ + + D++
Sbjct: 15 VPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVR 72
Query: 296 SKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 355
+T+ K K P +NEE+ V + +ELAV+ +G + + +EL
Sbjct: 73 VGQTSTKQKTNKPTYNEEFCANV--TDGGHLELAVFHETPLGYDHFVANCTLQFQELLRT 130
Query: 356 EPSVKTLDLLKNMD 369
+ T + +++
Sbjct: 131 TGASDTFEGWVDLE 144
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-06
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 17/80 (21%)
Query: 418 GLLVVIVHEAQD-------------VEGKHHTNPYARILFRGEE-RKTKHVKKNRDPRWE 463
G L V + EA +G +PY + +T +K P +
Sbjct: 29 GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYN 88
Query: 464 EEFQFMLEEPPTNDRLHVEV 483
EEF + + L + V
Sbjct: 89 EEFCANVTDG---GHLELAV 105
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-25
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 15/116 (12%)
Query: 258 PVGILHVKVVKAMNLKKKDL-----------LGASDPYVKLKITEDKLPSKKTTVKHKNL 306
G+L +K+ +A++LK DPY+ L + D +T K K
Sbjct: 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTN 61
Query: 307 NPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTL 362
+P W++E+ V + +ELAV+ +G D + + +EL
Sbjct: 62 SPAWHDEFVTDVCNGRK--IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED 115
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-05
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 18/81 (22%)
Query: 418 GLLVVIVHEAQ-----DVEGKHHTN---------PYARILFRGEE-RKTKHVKKNRDPRW 462
GLL + + EA + PY + +T +K P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 463 EEEFQFMLEEPPTNDRLHVEV 483
+EF + ++ + V
Sbjct: 66 HDEFVTDVCNG---RKIELAV 83
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 2e-24
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEE 313
Y V + +A L D SDPY+K+ I +K KT V K L+P ++E
Sbjct: 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDET 76
Query: 314 YNFTVRDPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTP-EEPSVKTLDLLKN 367
+ F A+ + +++ + D +G ++PL + E + +++
Sbjct: 77 FTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-06
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 418 GLLVVIVHEAQDV----EGKHHTNPYARILF---RGEERKTKHVKKNRDPRWEEEFQFML 470
VV + EA+ + E ++PY ++ + + KT+ ++K DP ++E F F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF-- 79
Query: 471 EEPPTND----RLHVEVC 484
P LH +
Sbjct: 80 YGIPYTQIQELALHFTIL 97
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 2e-23
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
Y + V ++KA NLK D+ G SDPYVK+ + ++ KKT K +NLNP +NE
Sbjct: 11 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNE 70
Query: 313 EYNFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 355
+ F + + + V D +++ ++D +G + K E
Sbjct: 71 SFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGE 115
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 469
++V + +A++ ++ ++PY ++ R E++KT K+N +P + E F F
Sbjct: 16 NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75
Query: 470 LEEPPTNDR-LHVEVC 484
+ + + + V
Sbjct: 76 IPTEKLRETTIIITVM 91
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 5e-23
Identities = 18/113 (15%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK-KTTVKHKNLNPEWNEE 313
Y L V ++A+ + G D YV+ + + +T +K + L+ W E
Sbjct: 21 YDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEG 77
Query: 314 YNFTV--RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
+ + + + L + ++ +H G + L + + + +L
Sbjct: 78 LVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 5e-08
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 420 LVVIVHEAQDVEGKHHTNPYARILF----RGEERKTKHVKKNRDPRWEEEFQFMLEEPPT 475
L V EA + Y + E +T K+ WEE L E
Sbjct: 28 LFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87
Query: 476 NDR-LHVEVCS 485
L + + +
Sbjct: 88 PTATLTLTLRT 98
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 6e-23
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS-----------KKTTVKHKNLNP 308
G L + +++A NL +D G SDP+VK+ + + ++T K+LNP
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 309 EWNEEYNFTVRDPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365
EWN+ + E + +E+ V+D+++ +D +G ++ L + + + + L
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-05
Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 19/86 (22%)
Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARI--------------LFRGEERKTKHVKKNRDP 460
G L++ + +A++ + +++P+ ++ +R+TK+V+K+ +P
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 461 RWEEEFQFML--EEPPTNDRLHVEVC 484
W + + E L V V
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVW 103
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 7e-23
Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITED--KLPSKKTTVKHKNLNPEWN 311
Y + L V V + L D S+PYVK + D + +KT++K +NP ++
Sbjct: 18 YEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYD 77
Query: 312 EEYNFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
E + + + ++ +V+ + G++ +G + + ++ L L
Sbjct: 78 ETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPL 132
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 418 GLLVVIVHEAQD----VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 468
LVV V E E K +NPY + R +RKT + +P ++E ++
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82
Query: 469 MLEEPPTNDR-LHVEVCS 485
+ E R L V
Sbjct: 83 EIPESLLAQRTLQFSVWH 100
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 2e-22
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
Y G L V +++A NLKK D+ G SDPYVK+ + ++ +L KKTT+K LNP +NE
Sbjct: 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE 79
Query: 313 EYNFTVRDPESQAV--ELAVYDWEQVGKHDKMGMNVVPLKELTPE 355
++F V + Q V + V D++++GK+D +G V E
Sbjct: 80 SFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 469
G L V++ EA++ ++ ++PY +I R +++KT K +P + E F F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 470 LEEPPTNDR-LHVEVC 484
+ + V V
Sbjct: 85 VPFEQIQKVQVVVTVL 100
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 2e-22
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 255 YRRPVGILHVKVVKAMNLK-------KKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLN 307
Y L V+V++A +L + + S+PYVK+ + D+ SK+T VK K
Sbjct: 21 YDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQK 80
Query: 308 PEWNEEYNFTVRDPE--SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
P + E Y F + E + + L V D+++ +H +G VPL E+ + L
Sbjct: 81 PVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 8e-07
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 418 GLLVVIVHEAQD----------VEGKHHTNPYARILF---RGEERKTKHVKKNRDPRWEE 464
L V V EA+D + H+NPY +I + ++T +K + P +EE
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 465 EFQFMLEEPPTNDR-LHVEVCS 485
+ F + R L + V
Sbjct: 86 RYTFEIPFLEAQRRTLLLTVVD 107
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 92.0 bits (228), Expect = 3e-22
Identities = 15/83 (18%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 409 APENTPAGGGL-LVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPR-WEEEF 466
+ P G + L+V + ++ G+ + A++ FRG+ ++ ++ D ++E F
Sbjct: 11 SSGLVPRGSHMALIVHLKTVSELRGRA--DRIAKVTFRGQSFYSRVLENCEDVADFDETF 68
Query: 467 QFMLEEPP-TNDRLHVEVCSVSS 488
++ + N+ L +++ + S
Sbjct: 69 RWPVASSIDRNEVLEIQIFNYSK 91
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 9e-13
Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 17/132 (12%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNP-EWNEEYNFTVRD 320
L V + L+ + +D K+ + V + +++E + + V
Sbjct: 23 LIVHLKTVSELRGR-----ADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVAS 74
Query: 321 P--ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKS 378
++ +E+ ++++ +V + +G + L+++ EE V+ D L D N
Sbjct: 75 SIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVV-EENRVEVSD-----TLIDDNNAII 128
Query: 379 RGQLVVEFIYKP 390
+ L +E Y+
Sbjct: 129 KTSLSMEVRYQA 140
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 4e-22
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
Y+ L V V+KA +L K D+ G SDPYVK+ + ++ KKT VK N +NE
Sbjct: 25 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNE 84
Query: 313 EYNFTVRDPESQAV--ELAVYDWEQVGKHDKMGMNVVPLKELTPE 355
+ F + + + E V D E+ +++ +G V+
Sbjct: 85 LFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSG 129
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 469
L V+V +A+ + ++PY ++ R ++KT K + + E F F
Sbjct: 30 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89
Query: 470 LEEPPTNDR-LHVEVC 484
+ + + V
Sbjct: 90 IPCESLEEISVEFLVL 105
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 8e-22
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
Y G L V +++ ++L D G SDP+VKL + D K KT +K K LNPE+NE
Sbjct: 32 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNE 91
Query: 313 EYNFTVRDPE--SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 355
E+ + ++ + ++++++V+D++ +D +G + +
Sbjct: 92 EFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGER 136
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 469
G L+V + ++ +++P+ ++ + + KT+ KK +P + EEF +
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 470 LEEPPTNDR-LHVEVC 484
++ + L + V
Sbjct: 97 IKHSDLAKKSLDISVW 112
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 2e-21
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 260 GILHVKVVKAMNLKKKDL-LGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNF 316
G L V+V++A +L +K PYVK+ + E+ + KKT + K L+P + + F
Sbjct: 30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89
Query: 317 TVRDPESQAVELAVY-DWEQVGKHDKMGMNVVPLKELTPEEP 357
P+ + +++ V+ D+ ++ MG+ + L+EL
Sbjct: 90 DE-SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSM 130
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 417 GGLLVVIVHEAQDV----EGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQ 467
G L V V A+ + K PY ++ ++KT+ +K DP +++
Sbjct: 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88
Query: 468 FMLEEPPTNDRLHVEVCSVSSRIG 491
F +E P L V V R+
Sbjct: 89 F--DESPQGKVLQVIVWGDYGRMD 110
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-21
Identities = 20/109 (18%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS--KKTTVKHKNLNPEWNE 312
+ + L V ++ A +L ++ +PYVK+ D+ ++T K L P+WN+
Sbjct: 16 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQ 75
Query: 313 EYNFTVRDPE---SQAVELAVYDWEQVGKHDK--MGMNVVPLKELTPEE 356
+ ++ + +E+ ++D +V + + +G ++ L+ ++
Sbjct: 76 TFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 124
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 417 GGLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 468
G L+V + A+D E NPY +I F +R+TK VKK +P+W + F +
Sbjct: 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79
Query: 469 MLEEPPTND----RLHVEVC 484
+ L + +
Sbjct: 80 --SPVHRREFRERMLEITLW 97
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 6e-21
Identities = 20/109 (18%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS--KKTTVKHKNLNPEWNE 312
+ + L V ++ A +L ++ +PYVK+ D+ ++T K L P+WN+
Sbjct: 13 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQ 72
Query: 313 EYNFTVRDPE---SQAVELAVYDWEQVGKHDK--MGMNVVPLKELTPEE 356
+ ++ + +E+ ++D +V + + +G ++ L+ ++
Sbjct: 73 TFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 121
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 417 GGLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 468
G L+V + A+D E NPY +I F +R+TK VKK +P+W + F +
Sbjct: 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76
Query: 469 MLEEPPTND----RLHVEVC 484
+ L + +
Sbjct: 77 --SPVHRREFRERMLEITLW 94
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 6e-21
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
+ L V V NL G SDPYV++ + D + +KT V K LNP +++
Sbjct: 19 HSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQ 77
Query: 313 EYNFTVRDPE--SQAVELAVYDWEQVGKHDK--MGMNVVPLKELTPEEPSVKTLDLLKN 367
++F+V PE + +++AV + DK +G +V L + + DL ++
Sbjct: 78 SFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 418 GLLVVIVHEAQD--VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFML 470
L+V+VH ++ + ++PY R+ R RKT KK +P +++ F F +
Sbjct: 24 NKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSV 83
Query: 471 EEPPTNDR-LHVEVCS 485
P R L V V +
Sbjct: 84 SLPEVQRRTLDVAVKN 99
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 6e-21
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFT 317
G L + V+ +L +D +PYVK + D K +KT + K NP +NE ++
Sbjct: 20 GTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78
Query: 318 V---RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365
+ ++L+V E + ++ +G +PLK+ + +VK L
Sbjct: 79 GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 418 GLLVVIVHEAQD--VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFML 470
G L ++V +D E NPY + + +RKTK +K R+P + E +
Sbjct: 20 GTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY-- 77
Query: 471 EEPPTND----RLHVEVCS 485
L + V S
Sbjct: 78 SGYSKETLRQRELQLSVLS 96
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 1e-20
Identities = 12/108 (11%), Positives = 36/108 (33%), Gaps = 5/108 (4%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI---TEDKLPSKKTTVKHKNLNPEWN 311
Y + +++ NL +++ + +E +T + +N
Sbjct: 38 YDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFN 97
Query: 312 EEYNFTVRDPE--SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEP 357
E + ++ P + + + V ++ + +G + L E+
Sbjct: 98 EVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGE 145
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 9/79 (11%), Positives = 27/79 (34%), Gaps = 10/79 (12%)
Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF------RGEERKTKHVKKNRDPRWEEEFQF 468
+++ + + + + R+ +T+ + + + E F
Sbjct: 43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102
Query: 469 MLEEPPTNDR-LHVEVCSV 486
+ P + + L V+VC+
Sbjct: 103 SMSYPALHQKTLRVDVCTT 121
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 4e-20
Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
+L + +++ L K G DPYVK+ + + +L +KT +P ++E
Sbjct: 22 IDAQDRVLLLHIIEGKGLISKQP-GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHE 80
Query: 313 EYNFTVRDPESQ-AVELAVYDWEQVGKHDK-MGMNVVPLKEL 352
+ F V++ + Q + + V++ + +G +K L
Sbjct: 81 HFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 5e-08
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 418 GLLVVIVHEAQD--VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFML 470
+L++ + E + + +PY +I R +KT+ V RDP + E F F +
Sbjct: 27 RVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPV 86
Query: 471 EEPPTNDRLHVEV 483
+E RL V V
Sbjct: 87 QEEDDQKRLLVTV 99
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 3e-13
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
+L V V KA ++ + YV LK+ K TT+ + P W +++ F +
Sbjct: 5 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN----VKSTTIAVRGSQPSWEQDFMFEIN 57
Query: 320 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
+ + + V++ + + +G +PL+ +
Sbjct: 58 RLDLG-LTVEVWN-KGLIWDTMVGTVWIPLRTI 88
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 1e-06
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 418 GLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTND 477
LL V V +A+ + N Y + + + T V+ + P WE++F F + +
Sbjct: 5 SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRL--DL 61
Query: 478 RLHVEVC 484
L VEV
Sbjct: 62 GLTVEVW 68
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 71.1 bits (173), Expect = 3e-13
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 250 DPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPE 309
+R + L V +A +L A+D Y+K+ + +T V N NP
Sbjct: 384 QDCCPRQRGLAHLVVSNFRAEHLWGDYT-TATDAYLKVFFGGQE---FRTGVVWNNNNPR 439
Query: 310 WNEEYNF-TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLK 350
W ++ +F V + + V+D + D +G
Sbjct: 440 WTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH 481
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 56.1 bits (134), Expect = 2e-08
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 410 PENTPAGGGLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQ 467
G LVV A+ + G T+ Y ++ F G+E +T V N +PRW ++
Sbjct: 386 CCPRQRGLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMD 445
Query: 468 FMLEEPPTNDRLHVEV 483
F T L V+V
Sbjct: 446 FENVLLSTGGPLRVQV 461
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 2e-11
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
+L V V KA ++ + YV LK+ + TT+ + P W +++ F +
Sbjct: 14 SLLCVGVKKAKFDGAQEKF---NTYVTLKVQ----NVESTTIAVRGSQPSWEQDFMFEIN 66
Query: 320 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 352
+ + + V++ + + +G +PL+ +
Sbjct: 67 RLDLG-LTVEVWN-KGLIWDTMVGTVWIPLRTI 97
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 5e-06
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 409 APENTPAGGG---LLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEE 465
+P + GGG LL V V +A+ + N Y + + E T V+ + P WE++
Sbjct: 2 SPGISGGGGGILSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGS-QPSWEQD 60
Query: 466 FQFMLEEPPTNDRLHVEV 483
F F + + L VEV
Sbjct: 61 FMFEINRL--DLGLTVEV 76
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 63.0 bits (152), Expect = 1e-10
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 262 LHVKVVKAMNLKKKDLLGAS--DPYVKLKI---TEDKLPSKKTTVKHKNLNPEWNEEYNF 316
L V+++ L K + S DP V ++I D + + + NP W+ E+ F
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 317 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP 354
V P+ V V D++ K+D +G + +P L
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 2e-08
Identities = 80/555 (14%), Positives = 159/555 (28%), Gaps = 144/555 (25%)
Query: 31 FQPTDVKNPEIRPLVERDSETLQQMLP--EIPLWVKCPDYDRVDWLNKFLELMWPYLDKA 88
F+ V N + + + + + +L EI + D + L L W L K
Sbjct: 25 FEDAFVDNFDCKDV----QDMPKSILSKEEIDHIIMSKDAV-----SGTLRLFWTLLSKQ 75
Query: 89 ICKTAKNIAK-----------PIIAEQI------PKYKIESVEFETLTLGTLPPTFQGMK 131
+ + + + I P + L F
Sbjct: 76 -----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 132 VYVTDEKELIMEPCLKWAANPNVTI-GVKAFGLKATVQVVDLQVFAQPRITLKPLVPAFP 190
V + + L+ NV I GV G K V L V ++ K
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-K---TWVALDVCLSYKVQCK-----MD 181
Query: 191 CFANIY---VSLMEKPHVDFGLKLVGADLMSIPGLYRFVQELIKTQVANMYLWPKTLE-- 245
I+ + P L + L + ++ + +
Sbjct: 182 F--KIFWLNLKNCNSPE---------TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 246 ---VPILDPSKAYRRPVGIL-HV---KVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK 298
+ L SK Y + +L +V K A NL K LL V D L +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT-----DFLSAAT 285
Query: 299 TTVKHKNLNPEWNEEYNFTVRDPE---SQAVELAVYDW-EQVGKHDKMGMNVVPLKELTP 354
T H +L+ + T + + + ++ D +V + ++++ E
Sbjct: 286 T--THISLD---HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA--ESIR 338
Query: 355 EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKA--PEN 412
+ + T D K+++ + + + ++E + + K F+ + P +
Sbjct: 339 DGLA--TWDNWKHVNCD----KLTT---IIESSLNVLEPAEYRKMFDRL-----SVFPPS 384
Query: 413 TPAGGGLLVVIVHEA--QDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFML 470
LL +I + DV ++ K K + + +E +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVM---------VVV-------NKLHKYSLVEKQPKESTISI 428
Query: 471 EEPPTNDRLHVEVCSVSSRIGLLHPKVLFQF------------------YFIFYLVHRFK 512
+++E+ LH ++ + YF ++ H K
Sbjct: 429 -----PS-IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 513 QECCRM--KNDPFRQ 525
+ FR
Sbjct: 483 N--IEHPERMTLFRM 495
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 53.1 bits (126), Expect = 1e-07
Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 14/187 (7%)
Query: 251 PSK-AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNL--- 306
P+K RR +L + +++A L K Y +L + D + +TT K ++
Sbjct: 1 PNKDNSRRVDNVLKLWIIEARELPPKK-----RYYCELCL--DDMLYARTTSKPRSASGD 53
Query: 307 NPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK---MGMNVVPLKELTPEEPSVKTLD 363
W E + F D ++ K DK +G+ VP+ L + +
Sbjct: 54 TVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYP 113
Query: 364 LLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVI 423
+ S G + P +++ + +
Sbjct: 114 VTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYV 173
Query: 424 VHEAQDV 430
+ + +
Sbjct: 174 TNHYRML 180
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 3/132 (2%)
Query: 228 ELIKTQVANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKL 287
+ IK K +G L V V++A LK G S+PY ++
Sbjct: 355 QKIKAASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEI 414
Query: 288 KITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVV 347
+ S T LNP+WN F ++D + L ++D +Q D +G +
Sbjct: 415 SMGSQ---SYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEI 471
Query: 348 PLKELTPEEPSV 359
P+ ++ E+ S
Sbjct: 472 PVAKIRTEQESK 483
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A Length = 816 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 4e-04
Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 15/124 (12%)
Query: 238 YLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK 297
++ S G + +K++ A L K + YV++++ +
Sbjct: 628 FMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDKQI----SSYVEVEMYGLPTDTV 683
Query: 298 K-----TTVKHKNLNPEWNEEYNF--TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLK 350
+ +++ ++P ++E+ V P+ V + V + +G V+PL
Sbjct: 684 RKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE----ENGKFIGHRVMPLD 739
Query: 351 ELTP 354
+ P
Sbjct: 740 GIKP 743
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B Length = 799 | Back alignment and structure |
|---|
Score = 42.3 bits (98), Expect = 4e-04
Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 15/124 (12%)
Query: 238 YLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE---DKL 294
++ + + L + V+ L ++ YV++++ D
Sbjct: 656 FMRRPDKQFNPFSVDRIDVVVATTLSITVISGQFLSERS----VRTYVEVELFGLPGDPK 711
Query: 295 PSKKTTVKHKN--LNPEWNEEY--NFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLK 350
+T + +NP W EE + PE ++ +AV + + +G ++P+
Sbjct: 712 RRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVME----EGNKFLGHRIIPIN 767
Query: 351 ELTP 354
L
Sbjct: 768 ALNS 771
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138 | Back alignment and structure |
|---|
Score = 38.9 bits (90), Expect = 7e-04
Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 260 GILHVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLP--SKKTTVKHKNLNPEWNEEYNF 316
L + + + G A +PY + + E + K + P W+ ++
Sbjct: 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDA 69
Query: 317 TVRDPESQAVELAVYD 332
+ + +++ V
Sbjct: 70 HINK--GRVMQIIVKG 83
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 100.0 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.85 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.85 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.83 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.83 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.83 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.82 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.82 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.81 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.81 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.79 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.77 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.76 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.76 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.76 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.76 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.76 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.74 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.73 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.73 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.72 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.72 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.72 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.72 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.71 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.71 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.71 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.71 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.71 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.71 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.71 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.71 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.71 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.71 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.71 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.7 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.7 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.7 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.7 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.7 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.7 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.7 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.7 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.7 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.7 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.69 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.69 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.69 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.69 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.68 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.68 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.68 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.67 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.67 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.66 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.66 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.66 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.65 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.65 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.64 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.64 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.63 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.63 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.62 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.62 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.61 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.6 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.6 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.6 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.58 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.58 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.57 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.57 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.55 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.54 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.51 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.5 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.49 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.46 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.4 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.39 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.38 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.29 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.26 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.22 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.15 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.12 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.1 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.1 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.07 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.0 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.98 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 98.95 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.93 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.92 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.13 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.1 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 92.11 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 90.31 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 90.26 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 89.12 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 88.67 | |
| 1e7u_A | 961 | Phosphatidylinositol 3-kinase catalytic subunit; p | 82.84 | |
| 1e7u_A | 961 | Phosphatidylinositol 3-kinase catalytic subunit; p | 81.81 | |
| 2y3a_A | 1092 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 80.92 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 80.66 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=285.28 Aligned_cols=230 Identities=26% Similarity=0.404 Sum_probs=193.6
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEe
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 332 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d 332 (525)
+....|.|.|+|++|++|+.+|..|.+||||++++++.....++|+++++++||.|||+|.|.+... ....|.|+|||
T Consensus 14 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d 93 (284)
T 2r83_A 14 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYD 93 (284)
T ss_dssp EETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEE
Confidence 3456799999999999999999889999999999986544467999999999999999999998643 35799999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCCCCCCCcccccccccCCCCC
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPEN 412 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 412 (525)
++.+++|++||++.++|.++..+.....|++|.... .......|+|.+++.|.|
T Consensus 94 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~----~~~~~~~G~i~l~l~~~p---------------------- 147 (284)
T 2r83_A 94 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE----KEEQEKLGDICFSLRYVP---------------------- 147 (284)
T ss_dssp CCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCS----SCCCCCCCEEEEEEEEET----------------------
T ss_pred CCCCCCCceeEEEEEcchhcccCCcceeEEEeeccc----cccccccccEEEEEEecC----------------------
Confidence 999999999999999999998887778888875321 112356899999999976
Q ss_pred CCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC--C---eEEEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEE
Q 009797 413 TPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--G---EERKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEV 483 (525)
Q Consensus 413 ~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~--~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V 483 (525)
..+.|.|.|++|+||+.. +.+||||++++. + .+++|+++++|.||+|||.|.|.+...... ..|.|+|
T Consensus 148 ---~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V 224 (284)
T 2r83_A 148 ---TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 224 (284)
T ss_dssp ---TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEE
T ss_pred ---cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEE
Confidence 467899999999999863 578999999985 3 356999999999999999999999765333 3799999
Q ss_pred EEcccCccCCCCCccceEEEEEccccccchhhhc
Q 009797 484 CSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCR 517 (525)
Q Consensus 484 ~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~ 517 (525)
||++. ++++++||++.|++.++..+.++|.
T Consensus 225 ~d~d~----~~~~~~iG~~~i~l~~~~~~~~~w~ 254 (284)
T 2r83_A 225 LDYDK----IGKNDAIGKVFVGYNSTGAELRHWS 254 (284)
T ss_dssp EECCS----SSCCCEEEEEEEETTCCHHHHHHHH
T ss_pred EeCCC----CCCCcEEEEEEECCCCCCcHHHHHH
Confidence 99986 7889999999999998765555543
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=278.35 Aligned_cols=229 Identities=26% Similarity=0.417 Sum_probs=185.3
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEe
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 332 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d 332 (525)
+....+.|.|+|++|++|+.+|..|.+||||++++.+.....++|+++++++||.|||+|.|.+... ....|.|+|||
T Consensus 15 y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d 94 (296)
T 1dqv_A 15 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD 94 (296)
T ss_dssp CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEE
Confidence 4456899999999999999999999999999999954444457999999999999999999998643 24589999999
Q ss_pred cCCCCCCCccEEEEEE-CcccCC-CCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCCCCCCCcccccccccCCC
Q 009797 333 WEQVGKHDKMGMNVVP-LKELTP-EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAP 410 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~-L~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~ 410 (525)
++.+++|++||++.++ +.++.. ......|.++... .......|+|.+++.|.|
T Consensus 95 ~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~-----~~~~~~~G~i~vsl~y~~-------------------- 149 (296)
T 1dqv_A 95 FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG-----GSEKADLGELNFSLCYLP-------------------- 149 (296)
T ss_dssp CCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC-----SSCCSCCCEEEEEEEEET--------------------
T ss_pred cCCCCCCceEEEEEeccccccccCCccceeeeccccc-----cccccccceEEEEEEecc--------------------
Confidence 9999999999999996 544443 2233455555321 112456899999999976
Q ss_pred CCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC--C---eEEEeeeecCCCCCcccceEEEEecCCCCC-CeEEE
Q 009797 411 ENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--G---EERKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHV 481 (525)
Q Consensus 411 ~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~--~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i 481 (525)
..|.|.|.|++|+||+.. +.+||||++++. + .++||+++++|.||+|||.|.|.+...... ..|.|
T Consensus 150 -----~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i 224 (296)
T 1dqv_A 150 -----TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSI 224 (296)
T ss_dssp -----TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCC
T ss_pred -----ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEE
Confidence 478999999999999863 568999999996 3 467999999999999999999998764332 37999
Q ss_pred EEEEcccCccCCCCCccceEEEEEcccccc-chhhhc
Q 009797 482 EVCSVSSRIGLLHPKVLFQFYFIFYLVHRF-KQECCR 517 (525)
Q Consensus 482 ~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~-~~~~~~ 517 (525)
+|||++. ++++++||++.|++.++.. +.++|.
T Consensus 225 ~V~d~d~----~~~~~~iG~~~i~l~~~~~~~~~~W~ 257 (296)
T 1dqv_A 225 AVVDYDC----IGHNEVIGVCRVGPEAADPHGREHWA 257 (296)
T ss_dssp EEEECCS----SSCCEEEEECCCSSCTTCHHHHHHHH
T ss_pred EEEeCCC----CCCCceEEEEEECCccCCchhHHHHH
Confidence 9999986 7889999999999998754 444443
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=163.21 Aligned_cols=128 Identities=29% Similarity=0.485 Sum_probs=109.5
Q ss_pred CceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC---CCCeEEEEEEec
Q 009797 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAVYDW 333 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v~d~ 333 (525)
...|.|.|+|++|++|+..+. |.+||||++++++.. ++|+++++++||+|||+|.|.+..+ ....|.|+|||+
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~ 79 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF 79 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCE---EECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEe---EEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence 457999999999999999998 999999999998754 6999999999999999999999754 367899999999
Q ss_pred CCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
+..++|++||++.+++.++..+.....|+.+.+..+. .+....|+|+++++|.|.
T Consensus 80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~---~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNE---KGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECT---TCCEEEEEEEEEEEECCC
T ss_pred CCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCC---CCCCCCCEEEEEEEEECC
Confidence 9999999999999999999888777777763322222 224578999999999985
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=164.20 Aligned_cols=127 Identities=28% Similarity=0.515 Sum_probs=110.0
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecC-CCCCCeEeeEEEEEeeCCCCCeEEEEEEe
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYD 332 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d 332 (525)
....+.|.|+|+|++|++|+..+..|.+||||+++++++. .+|++++ ++.||.|||+|.|.+.+ ....|.|+|||
T Consensus 4 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d 79 (136)
T 1wfj_A 4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD---QKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFD 79 (136)
T ss_dssp CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCE---EECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECC
T ss_pred CCCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCcc---ceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEE
Confidence 3456899999999999999999988999999999998765 5899998 89999999999999987 56799999999
Q ss_pred cCCCCCCCccEEEEEECcccC-CCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecC
Q 009797 333 WEQVGKHDKMGMNVVPLKELT-PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK 392 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 392 (525)
++.+++|++||++.++|.++. .+.....|+++.+ +.+..|+|+++++|.|..
T Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEECC
T ss_pred CCCCCCCceEEEEEEEHHHhccCCCCCcEEEEeec--------CCccCEEEEEEEEEEeCC
Confidence 999999999999999999994 3434556777641 257899999999999964
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-20 Score=157.61 Aligned_cols=120 Identities=22% Similarity=0.364 Sum_probs=103.1
Q ss_pred eeEEEEEEEeccCCcc---cCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCC
Q 009797 259 VGILHVKVVKAMNLKK---KDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ 335 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~---~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~ 335 (525)
.|.|+|+|++|++|+. .+..|.+||||++++++.....++|+++++++||+|||+|.|.+.......|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 5899999999999998 4667899999999998754455799999999999999999999976667899999999998
Q ss_pred CCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
. +|++||++.++|.++..+.....|++|. ....|.|+++++..
T Consensus 82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~----------~~~~g~i~~~le~~ 124 (126)
T 1rlw_A 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN----------QVTEMVLEMSLEVA 124 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEET----------TTEEEEEEEEEECC
T ss_pred C-CCceeEEEEEEHHHccCCCcEEEEEEcC----------CCceEEEEEEEEeC
Confidence 7 4899999999999999888788888873 25677888777543
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=166.04 Aligned_cols=120 Identities=23% Similarity=0.357 Sum_probs=102.2
Q ss_pred cCCCceeEEEEEEEeccCCcccCcC----------CCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCC
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLL----------GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPES 323 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~ 323 (525)
.+....|.|+|+|++|++|+++|.. |.+||||++++++.+ ..+|+++++|+||+|||+|.|.+.+ .
T Consensus 23 ~~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~--~~kT~v~~ktlnP~WNE~F~f~v~~--~ 98 (157)
T 2fk9_A 23 GTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVR--VGQTSTKQKTNKPTYNEEFCANVTD--G 98 (157)
T ss_dssp -CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEE--EEECCCCSSCSSCEEEEEEEEEEEE--E
T ss_pred hhccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEe--eEEeeecCCCCCCccCcEEEEEcCC--C
Confidence 3446789999999999999988732 679999999998754 2689999999999999999999975 4
Q ss_pred CeEEEEEEecCCCCCCCccEEEEEECcccCCC----CCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 324 QAVELAVYDWEQVGKHDKMGMNVVPLKELTPE----EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 324 ~~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~----~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
+.|.|+|||++.+++|++||++.+++.++..+ .....|++| ...|+|+++++|.
T Consensus 99 ~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L------------~~~G~i~l~l~~~ 156 (157)
T 2fk9_A 99 GHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDL------------EPEGKVFVVITLT 156 (157)
T ss_dssp CEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEEC------------BSSCEEEEEEEEC
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEEC------------CCCcEEEEEEEEE
Confidence 68999999999999999999999999999854 456788876 2379999999874
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-20 Score=162.90 Aligned_cols=130 Identities=34% Similarity=0.571 Sum_probs=102.4
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc---CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY 331 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~ 331 (525)
.....|.|+|+|++|++|+.++..|.+||||++++.+.. ...++|+++++++||.|||+|.|.+... ...|.|+||
T Consensus 15 ~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~ 93 (153)
T 3b7y_A 15 DEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVF 93 (153)
T ss_dssp CCTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEE
T ss_pred CCCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEE
Confidence 345789999999999999999988999999999998432 2357999999999999999999999764 578999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCe------eEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPS------VKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~------~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
|++..++|++||++.++|.++..+... ..|+.|.... ......|+|+++++|.|
T Consensus 94 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 94 DENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp ECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS-----TTCCCCSEEEEEEEECC
T ss_pred ECCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc-----CCCCcceEEEEEEEEeC
Confidence 999999999999999999999876542 4677764321 12467899999999976
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-20 Score=159.66 Aligned_cols=119 Identities=24% Similarity=0.394 Sum_probs=101.4
Q ss_pred CceeEEEEEEEeccCCcccCcCCC-----------CCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCe
Q 009797 257 RPVGILHVKVVKAMNLKKKDLLGA-----------SDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQA 325 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~d~~g~-----------~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~ 325 (525)
...|.|+|+|++|++|+++|..++ +||||++++++.. ..+|+++.+|+||+|||+|.|.+.+. +.
T Consensus 3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~--~~~T~~~~~t~nP~WnE~f~f~v~~~--~~ 78 (136)
T 1gmi_A 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSR--IGQTATKQKTNSPAWHDEFVTDVCNG--RK 78 (136)
T ss_dssp CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEE--EEECCCCSSCSSCEEEEEEEEEEEEE--CE
T ss_pred ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeE--eeeeeEECCCcCCccCCEEEEEecCC--CE
Confidence 347999999999999998886554 9999999997654 35899999999999999999999764 78
Q ss_pred EEEEEEecCCCCCCCccEEEEEECcccCCCCC--eeEEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 326 VELAVYDWEQVGKHDKMGMNVVPLKELTPEEP--SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 326 L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
|.++|||++..++|++||++.+++.++..+.. ...|+++ ...|+|+++++|.+.
T Consensus 79 L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L------------~~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 79 IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL------------EPEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC------------BSSCEEEEEEEEEEE
T ss_pred EEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEc------------CCCeEEEEEEEEEec
Confidence 99999999999999999999999999987542 3667764 247999999999763
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.8e-20 Score=158.43 Aligned_cols=126 Identities=31% Similarity=0.497 Sum_probs=107.2
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEec
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 333 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 333 (525)
.+..+.|.|+|+|++|++|+.++..|.+||||++++++.. .+|+++++++||.|||+|.|.+.+. .+.|.++|||+
T Consensus 7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~ 82 (133)
T 2ep6_A 7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDE 82 (133)
T ss_dssp CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEE
T ss_pred cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEE---EEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEEC
Confidence 4567899999999999999999989999999999998754 5999999999999999999999864 57899999999
Q ss_pred CCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
+..++|++||++.+++.++..+. ..|++|... . ......|+|+++++|..
T Consensus 83 d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~----~-~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 83 DGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNK----D-LEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp ETTEEEEECCBCEEEGGGCCSSC--CEECCCBCS----C-TTSCCSSEEEEEEEEEE
T ss_pred CCCCCCCeeEEEEEEHHHccCCC--ceEEEeecC----C-CCCccceEEEEEEEEEe
Confidence 99889999999999999997654 356665321 1 12467899999998864
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-19 Score=156.11 Aligned_cols=123 Identities=25% Similarity=0.426 Sum_probs=103.2
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCC
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ 335 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~ 335 (525)
....|.|+|+|++|++|+.+|..|.+||||++++++.. ++|+++++++||.|||+|.|.+..+ .+.|.++|||++.
T Consensus 13 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~ 88 (148)
T 3kwu_A 13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDD 88 (148)
T ss_dssp --CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCC
T ss_pred cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEE---EECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCC
Confidence 34579999999999999999999999999999997644 6999999999999999999999765 4789999999998
Q ss_pred C-----------CCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 336 V-----------GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 336 ~-----------~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
. ++|++||++.++|.++. .....|++|.+. ......+|+|+++++|.
T Consensus 89 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~-----~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 89 DIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKR-----TDKSAVSGAIRLHISVE 146 (148)
T ss_dssp SHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCS-----STTCCCCCEEEEEEEEE
T ss_pred CccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccC-----CCCCCCceEEEEEEEEE
Confidence 5 78999999999999993 345677776432 12245789999999885
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=162.13 Aligned_cols=130 Identities=33% Similarity=0.549 Sum_probs=100.3
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcC---CceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEe
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL---PSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 332 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d 332 (525)
....|.|+|+|++|++|+.++..|.+||||++++.+... ..++|+++++++||.|||+|.|.+.. ....|.|+|||
T Consensus 4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~-~~~~L~~~V~d 82 (176)
T 3m7f_B 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP-QRHRILFEVFD 82 (176)
T ss_dssp CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT-TTCEEEEEEEE
T ss_pred CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC-CCCEEEEEEEE
Confidence 346899999999999999999899999999999985332 34799999999999999999999975 35789999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCCCe-e-----EEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEEPS-V-----KTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~~~-~-----~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
++.+++|++||++.++|.++...... . .|+.|.... ...+..|+|++++.|.|.
T Consensus 83 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 83 ENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp CC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS-----TTCCCCSEEEEEEEECC-
T ss_pred CCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC-----CCCccCEEEEEEEEEEeC
Confidence 99999999999999999999876433 1 567664321 124578999999999997
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=150.42 Aligned_cols=125 Identities=23% Similarity=0.439 Sum_probs=100.4
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCC
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 337 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~ 337 (525)
....|+|+|++|++|+.+|..|.+||||++++++.. ..++|+++++++||+|||+|.|.+... +.|.++|||++..+
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~ 79 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSG-QCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIH 79 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTC-CEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTT
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCC-ceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCC
Confidence 457899999999999999999999999999997643 457999999999999999999999765 45999999999887
Q ss_pred C---CCccEEEEEECcccC-CCCCeeEEEecccccccCCCCCCceeeEEEEEEEE
Q 009797 338 K---HDKMGMNVVPLKELT-PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 388 (525)
Q Consensus 338 ~---d~~lG~~~i~L~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (525)
+ |++||++.+++.++. .......+++|... .+ ....+..|+|++++.+
T Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~-~~--~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 80 KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL-NP--SDTDAVRGQIVVSLQT 131 (132)
T ss_dssp SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCS-ST--TCCCCCCSEEEEEEEE
T ss_pred CCCCCCceEEEEEeHHHhhcccccCcEEEeeeec-CC--CCCCceeEEEEEEEEc
Confidence 6 899999999999883 22333456666431 11 1224679999999865
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-19 Score=156.72 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=94.3
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcC---CcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE---DKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~---~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~ 329 (525)
+....+.|+|+|++|+||+.+|..|.+||||++++.+ ....++||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 38 y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~ 117 (155)
T 2z0u_A 38 YDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVD 117 (155)
T ss_dssp EETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEE
T ss_pred EcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEE
Confidence 4456799999999999999999999999999999976 322357999999999999999999998642 25689999
Q ss_pred EEecCCCCCCCccEEEEEECcccCC-CCCeeEEEec
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTP-EEPSVKTLDL 364 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~-~~~~~~~~~l 364 (525)
|||++..+++++||++.++|.++.. +.....|++|
T Consensus 118 V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L 153 (155)
T 2z0u_A 118 VCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNL 153 (155)
T ss_dssp EEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEE
T ss_pred EEECCCCCCCcEEEEEEEEHHHccCCCCccccceEc
Confidence 9999999999999999999999964 4566677765
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=150.64 Aligned_cols=111 Identities=33% Similarity=0.498 Sum_probs=97.9
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEe
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 332 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d 332 (525)
+....+.|.|+|++|++|+.++..+.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 29 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 108 (143)
T 3f04_A 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp EETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEe
Confidence 3456899999999999999999889999999999965544568999999999999999999998633 35789999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
++..++|++||++.++|.++..+.....|++|.
T Consensus 109 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred CCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 999999999999999999999888888888873
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=154.29 Aligned_cols=126 Identities=18% Similarity=0.255 Sum_probs=102.3
Q ss_pred CceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCC
Q 009797 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 336 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 336 (525)
...+.|+|+|++|++|+..+..+.+||||++++++. .++|+++++++||+|||+|.|.+.. .+.|.|+|||++.+
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~---~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~ 107 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQ---SKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTL 107 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTE---EEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSS
T ss_pred CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCE---EeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCC
Confidence 457899999999999994444455999999999873 4799999999999999999999853 78999999999999
Q ss_pred CCCCccEEEEEECcccCCCCC-----eeEEEecccccccCCCCCCceeeEEEEEEEEEecC
Q 009797 337 GKHDKMGMNVVPLKELTPEEP-----SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK 392 (525)
Q Consensus 337 ~~d~~lG~~~i~L~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 392 (525)
++|++||++.++|.++..+.. ...|++|... ..+....|+|.+++.|.+..
T Consensus 108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~-----~~~~~~~G~L~v~l~~l~~~ 163 (173)
T 2nq3_A 108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-----KEPTETIGDLSICLDGLQLE 163 (173)
T ss_dssp SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-----SCTTSEEEEEEEEEESEECC
T ss_pred CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC-----CCCCcccEEEEEEEeeeecc
Confidence 999999999999999864321 2457766442 11356799999999999863
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=151.37 Aligned_cols=111 Identities=33% Similarity=0.498 Sum_probs=97.4
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEe
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 332 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d 332 (525)
+....+.|+|+|++|++|+..+..|.+||||++++.+.....++|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 37 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 116 (152)
T 1rsy_A 37 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 116 (152)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEE
Confidence 4456799999999999999999889999999999975444557999999999999999999988642 35789999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
++.+++|++||++.++|.++..+.....|++|.
T Consensus 117 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 149 (152)
T 1rsy_A 117 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149 (152)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred CCCCCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence 999999999999999999998887778888874
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=150.39 Aligned_cols=112 Identities=34% Similarity=0.508 Sum_probs=97.2
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeC---CCCCeEEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVY 331 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v~ 331 (525)
+....+.|+|+|++|++|+.++..|.+||||++++.+.....++|+++++++||+|||+|.|.+.. .....|.|+||
T Consensus 21 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~ 100 (141)
T 2d8k_A 21 YNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVL 100 (141)
T ss_dssp ECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEE
Confidence 345679999999999999999988999999999997544456799999999999999999998532 23578999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEeccc
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 366 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 366 (525)
|++.+++|++||++.++|.++..+.....|++|.+
T Consensus 101 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 135 (141)
T 2d8k_A 101 DYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135 (141)
T ss_dssp ECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred ECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence 99999999999999999999998877888888754
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-18 Score=146.32 Aligned_cols=109 Identities=25% Similarity=0.360 Sum_probs=93.8
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEE-eeCC--CCCeEEEEE
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFT-VRDP--ESQAVELAV 330 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~-v~~~--~~~~L~i~v 330 (525)
....|.|.|+|++|++|+. +..|.+||||++++.+. ....++|+++++++||+|||+|.|. +... ....|.|+|
T Consensus 16 ~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V 94 (134)
T 2b3r_A 16 SYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSV 94 (134)
T ss_dssp EEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEE
T ss_pred eecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEE
Confidence 3457899999999999997 77789999999999543 3345799999999999999999999 7532 457999999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
||++..+++++||++.++|.++..+.....|++|.
T Consensus 95 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 129 (134)
T 2b3r_A 95 LSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129 (134)
T ss_dssp EECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECB
T ss_pred EECCCCCCCcEEEEEEEEhhhccCCCCcceeEECC
Confidence 99999999999999999999998877778888874
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=144.97 Aligned_cols=111 Identities=23% Similarity=0.428 Sum_probs=93.5
Q ss_pred CCCceeEEEEEEEeccCCcccCcC-CCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEE-eeCC--CCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT-VRDP--ESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~-v~~~--~~~~L~i~v 330 (525)
+....+.|.|+|++|++|+.++.. |.+||||++++.+.....++|+++++++||+|||+|.|. +... ....|.|+|
T Consensus 17 y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V 96 (138)
T 1ugk_A 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI 96 (138)
T ss_dssp EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEE
Confidence 344678999999999999999985 899999999998644456899999999999999999996 6432 246899999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCe-eEEEecc
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPS-VKTLDLL 365 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~-~~~~~l~ 365 (525)
||++.+++|++||++.++|.++..+... ..|.++.
T Consensus 97 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~ 132 (138)
T 1ugk_A 97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred EECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhh
Confidence 9999999999999999999999876544 4566663
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-17 Score=142.20 Aligned_cols=107 Identities=16% Similarity=0.085 Sum_probs=91.8
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCCCCCCcEEEEEEC---Ce-EEEe
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFR---GE-ERKT 451 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~dPyv~v~l~---~~-~~kT 451 (525)
....|+|++++.|.+ ..+.|.|+|++|++....+.+||||++++. ++ ++||
T Consensus 9 ~~~~G~l~~sl~y~~-------------------------~~~~L~V~v~~a~~~d~~g~sDPyv~v~l~~~~~~~~~kT 63 (138)
T 1wfm_A 9 WNQAPKLHYCLDYDC-------------------------QKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQT 63 (138)
T ss_dssp CSSCCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEEC
T ss_pred CCcceEEEEEEEEeC-------------------------CCCEEEEEEEEEEcCCCCCCcceEEEEEEEcCCCcccEec
Confidence 456899999999975 478999999999976666789999999994 22 4699
Q ss_pred eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEcccccc
Q 009797 452 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
+++++|.||+|||+|.|.+..... ...|.|+|||++. +++|++||++.|+|.++..
T Consensus 64 ~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~----~~~dd~lG~~~i~l~~l~~ 120 (138)
T 1wfm_A 64 ALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR----FSRHSVAGELRLGLDGTSV 120 (138)
T ss_dssp CCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS----SCTTSCSEEEEEESSSSSS
T ss_pred ccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC----CCCCcEEEEEEEEcccccC
Confidence 999999999999999999876433 3589999999986 7889999999999999853
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=146.09 Aligned_cols=110 Identities=24% Similarity=0.413 Sum_probs=95.3
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEE-eeCC--CCCeEEEEE
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFT-VRDP--ESQAVELAV 330 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~-v~~~--~~~~L~i~v 330 (525)
....+.|.|+|++|++|+.++..|.+||||++++.+.. ...++|+++++++||+|||+|.|. +... ....|.|+|
T Consensus 25 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V 104 (142)
T 2chd_A 25 DQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISV 104 (142)
T ss_dssp EGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEE
T ss_pred eCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEE
Confidence 35679999999999999999988999999999997532 345799999999999999999998 5421 136899999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
||++..++|++||++.++|.++..+.....|+.|.
T Consensus 105 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 139 (142)
T 2chd_A 105 CDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139 (142)
T ss_dssp EEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred EECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence 99999999999999999999999888888888763
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-18 Score=151.70 Aligned_cols=116 Identities=10% Similarity=0.125 Sum_probs=95.0
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC---e--
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---E-- 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~---~-- 447 (525)
....|+|++++.|.+ ..+.|.|.|++|+||+.+ +.+||||++++.+ .
T Consensus 26 ~~~~G~l~~sl~y~~-------------------------~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~ 80 (155)
T 2z0u_A 26 AVGATRIQIALKYDE-------------------------KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTT 80 (155)
T ss_dssp --CCEEEEEEEEEET-------------------------TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHH
T ss_pred cCCcEEEEEEEEEcC-------------------------CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCc
Confidence 456899999999986 478999999999999864 5799999999975 2
Q ss_pred -EEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 448 -ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 448 -~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
++||+++++|.||+|||+|+|.+..... ...|.|+|||++. ++++++||++.|+|.++... .....+||
T Consensus 81 ~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~----~~~~d~iG~~~i~l~~l~~~---~~~~~~W~ 151 (155)
T 2z0u_A 81 CLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDR----SHLEECLGGAQISLAEVCRS---GERSTRWY 151 (155)
T ss_dssp HEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECT----TSCEEEEEEEEEECTTSCTT---CCCEEEEE
T ss_pred cceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCC----CCCCcEEEEEEEEHHHccCC---CCccccce
Confidence 6799999999999999999999875322 3589999999986 78899999999999998421 22344565
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=142.72 Aligned_cols=109 Identities=19% Similarity=0.375 Sum_probs=87.3
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeC---CCCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~ 329 (525)
+....|.|.|+|++|++|+.++..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.. .....|.++
T Consensus 13 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~ 92 (129)
T 2bwq_A 13 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 92 (129)
T ss_dssp EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred EccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEE
Confidence 344579999999999999999988999999999995422 345799999999999999999999532 235789999
Q ss_pred EEecCCCCC--CCccEEEEEECcccCCCCCeeEEEec
Q 009797 330 VYDWEQVGK--HDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 330 v~d~~~~~~--d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|||++..++ +++||++.++|.++.... ...|++|
T Consensus 93 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 93 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp EEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred EEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 999999887 999999999999987654 6667765
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.6e-18 Score=147.99 Aligned_cols=112 Identities=21% Similarity=0.377 Sum_probs=96.2
Q ss_pred CCCceeEEEEEEEeccCCcccC-cCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCC--CCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~ 329 (525)
+....|.|.|+|++|++|+..+ ..|.+||||++++.+.. ...++|+++++++||+|||+|.|.+.... ...|.|+
T Consensus 18 y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~ 97 (148)
T 3fdw_A 18 YEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFS 97 (148)
T ss_dssp EETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEE
Confidence 4456799999999999999888 57899999999997543 23579999999999999999999986542 4579999
Q ss_pred EEecCCCCCCCccEEEEEECcccCCCCCeeEEEeccc
Q 009797 330 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 366 (525)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 366 (525)
|||++..++|++||++.++|.++..+.....|++|..
T Consensus 98 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 134 (148)
T 3fdw_A 98 VWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHG 134 (148)
T ss_dssp EEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBC
T ss_pred EEECCCCcCCcEEEEEEEEcccccccCCccceEECcC
Confidence 9999999999999999999999987767778888754
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=142.16 Aligned_cols=113 Identities=21% Similarity=0.399 Sum_probs=90.2
Q ss_pred eeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEE-----CCeEE
Q 009797 378 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF-----RGEER 449 (525)
Q Consensus 378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l-----~~~~~ 449 (525)
..|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++ +..++
T Consensus 3 ~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~ 57 (129)
T 2bwq_A 3 LSGQLSIKLWFDK-------------------------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKR 57 (129)
T ss_dssp CCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEE
T ss_pred eeEEEEEEEEEcc-------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcce
Confidence 4799999999986 478999999999999874 46899999999 34678
Q ss_pred EeeeecCCCCCcccceEEEEecCC-C-CCCeEEEEEEEcccCccCCCC--CccceEEEEEccccccchhhhcccCCCCC
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEP-P-TNDRLHVEVCSVSSRIGLLHP--KVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~-~-~~~~l~i~V~d~~~~~~~~~~--d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
+|+++++|.||+|||+|.|.+... . ....|.|+|||++. +++ +++||++.|+|.++... ...+||.
T Consensus 58 kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~----~~~~~~~~lG~~~i~l~~l~~~-----~~~~W~~ 127 (129)
T 2bwq_A 58 RTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR----VREEESEFLGEILIELETALLD-----DEPHWYK 127 (129)
T ss_dssp ECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-----------CEEEEEEEEEGGGCCCS-----SCEEEEE
T ss_pred ecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCc----CcCcCCceeEEEEEEccccCCC-----cCCccEE
Confidence 999999999999999999996322 1 23599999999986 565 99999999999998542 1556763
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=145.47 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=92.0
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----------CCCCcEEEEEEC
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----------HHTNPYARILFR 445 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----------~~~dPyv~v~l~ 445 (525)
....|+|.+++.|.| ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 9 ~~~~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~ 63 (147)
T 2enp_A 9 KYQLGMLHFSTQYDL-------------------------LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLL 63 (147)
T ss_dssp CCCCCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEE
T ss_pred CCcceEEEEEEEEcC-------------------------CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEE
Confidence 567999999999986 478999999999999873 368999999997
Q ss_pred C---eEEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEcccccc
Q 009797 446 G---EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 446 ~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
. ++++|++++++.||+|||+|.|.+..... ...|.|+|||++. ++++++||++.|+|.++..
T Consensus 64 ~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~----~~~~~~iG~~~i~l~~l~~ 129 (147)
T 2enp_A 64 PDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDK----FSRHCVIGKVSVPLCEVDL 129 (147)
T ss_dssp TCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCST----TCCSCCCEEEEEETTTSCT
T ss_pred eCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCC----CcCCcEEEEEEEechhcCC
Confidence 3 46799999999999999999999864321 2489999999986 7789999999999999854
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=145.96 Aligned_cols=112 Identities=20% Similarity=0.301 Sum_probs=94.2
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----e
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----E 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~ 447 (525)
....|+|.+++.|.| ..+.|.|+|++|+||+.. +.+||||++++.+ .
T Consensus 8 ~~~~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~ 62 (159)
T 1tjx_A 8 LEKLGDICFSLRYVP-------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK 62 (159)
T ss_dssp GGCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEE
T ss_pred cCcCCeEEEEEEEcC-------------------------CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceec
Confidence 467899999999987 478999999999999874 5789999999963 3
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhh
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECC 516 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~ 516 (525)
+++|+++++|.||+|||+|.|.+..... ...|.|+|||++. +++|++||++.|++.++..+.++|
T Consensus 63 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~----~~~~~~iG~~~i~l~~~~~~~~~w 128 (159)
T 1tjx_A 63 KKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK----IGKNDAIGKVFVGYNSTGAELRHW 128 (159)
T ss_dssp EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCEEEEEEEEETTCCHHHHHHH
T ss_pred eeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCC----CCCCceEEEEEECCCCCCcHHHHH
Confidence 5699999999999999999999875422 3589999999986 778999999999999865444443
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-17 Score=143.72 Aligned_cols=106 Identities=34% Similarity=0.550 Sum_probs=92.6
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCC-CCeEEEEEEecCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWEQ 335 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~~ 335 (525)
.+.|.|+|++|++|+.++..|.+||||++++.+.. ...++|+++++++||+|||+|.|.+.... ...|.|+|||++.
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 109 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 109 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence 57899999999999999988999999999997532 34579999999999999999999997532 4689999999999
Q ss_pred CCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
.++|++||++.++|.++..+ ....|++|.
T Consensus 110 ~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~ 138 (149)
T 1a25_A 110 TSRNDFMGSLSFGISELQKA-GVDGWFKLL 138 (149)
T ss_dssp SSCCEEEEEEEEEHHHHTTC-CEEEEEECB
T ss_pred CCCCCEEEEEEEEHHHhCcC-ccCCeEEcc
Confidence 99999999999999999876 466788774
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=146.57 Aligned_cols=111 Identities=29% Similarity=0.410 Sum_probs=92.8
Q ss_pred CCCceeEEEEEEEeccCCccc-Cc------CCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCe
Q 009797 255 YRRPVGILHVKVVKAMNLKKK-DL------LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQA 325 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~-d~------~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~ 325 (525)
+....+.|.|+|++|++|+.+ +. .|.+||||++++.+.....++|+++++++||+|||+|.|.+... ....
T Consensus 21 y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 100 (147)
T 2enp_A 21 YDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRT 100 (147)
T ss_dssp EETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSE
T ss_pred EcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCE
Confidence 445679999999999999984 43 35899999999986544567999999999999999999998642 2458
Q ss_pred EEEEEEecCCCCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 326 VELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 326 L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
|.|+|||++.++++++||++.++|.++........|+.|.
T Consensus 101 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~ 140 (147)
T 2enp_A 101 LLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140 (147)
T ss_dssp EEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCB
T ss_pred EEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEee
Confidence 9999999999999999999999999998776666777664
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=142.84 Aligned_cols=109 Identities=18% Similarity=0.362 Sum_probs=92.9
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~k 450 (525)
+|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ .+++
T Consensus 2 ~G~l~~sl~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~k 56 (138)
T 3n5a_A 2 RGELLLSLCYNP-------------------------SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKK 56 (138)
T ss_dssp CCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEEEcC-------------------------CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEe
Confidence 799999999986 478999999999999873 5789999999974 3569
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhh
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECC 516 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~ 516 (525)
|+++++|.||+|||.|.|.+..... ...|.|+|||++. +++|++||++.|++.++..+.++|
T Consensus 57 T~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~----~~~~~~lG~~~i~l~~~~~~~~~W 119 (138)
T 3n5a_A 57 TVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDK----LSRNDVIGKIYLSWKSGPGEVKHW 119 (138)
T ss_dssp CCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCS----SSCCEEEEEEEESSSSCHHHHHHH
T ss_pred CccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCC----CCCCcEEEEEEEccccCChHHHHH
Confidence 9999999999999999999876432 2489999999986 678999999999999876555544
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=144.76 Aligned_cols=110 Identities=27% Similarity=0.333 Sum_probs=91.9
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 330 (525)
+....+.|.|+|++|++|+.++..| +||||++++.+.. ...++|+++++++||+|||+|.|.+... ....|.|+|
T Consensus 19 y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V 97 (142)
T 2dmg_A 19 HSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAV 97 (142)
T ss_dssp EETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEE
Confidence 3445789999999999999999888 9999999996433 2457999999999999999999998532 245899999
Q ss_pred EecCCCCC--CCccEEEEEECcccCCCCCeeEEEecc
Q 009797 331 YDWEQVGK--HDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 331 ~d~~~~~~--d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
||++.+++ +++||++.++|.++..+.....|++|.
T Consensus 98 ~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~ 134 (142)
T 2dmg_A 98 KNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLT 134 (142)
T ss_dssp EECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCB
T ss_pred EECCCccccCCcEEEEEEEecccccccccccceeecc
Confidence 99998763 579999999999998776666777764
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-17 Score=145.77 Aligned_cols=110 Identities=16% Similarity=0.275 Sum_probs=94.1
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----e
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----E 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~ 447 (525)
....|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ .
T Consensus 20 ~~~~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~ 74 (166)
T 2cm5_A 20 IEERGKILVSLMYST-------------------------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKA 74 (166)
T ss_dssp CCCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CC
T ss_pred cCccceEEEEEEEEC-------------------------CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccc
Confidence 467899999999986 478999999999999874 5789999999976 5
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchh
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQE 514 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~ 514 (525)
+++|+++++|.||+|||+|.|.+..... ...|.|+|||++. +++|++||++.|++.++..+.+
T Consensus 75 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~~~~~~~ 138 (166)
T 2cm5_A 75 KHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI----GKSNDYIGGCQLGISAKGERLK 138 (166)
T ss_dssp EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCEEEEEEEEETTCCHHHHH
T ss_pred eEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCC----CCCCcEEEeEEEecccCCchhH
Confidence 6799999999999999999999975322 3599999999986 6789999999999998644333
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-17 Score=141.39 Aligned_cols=109 Identities=17% Similarity=0.263 Sum_probs=91.7
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC-cCCceeeeecCCCCCCeEeeEEEEEeeCCC--CCeEEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVY 331 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~ 331 (525)
+....+.|+|+|++|++ +|..|.+||||++++.+. ....++|+++++++||+|||+|.|.+...+ ...|.|+||
T Consensus 21 y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T 1wfm_A 21 YDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp EETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred EeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEE
Confidence 44567999999999993 677899999999999542 223479999999999999999999986432 568999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEeccc
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 366 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 366 (525)
|++.+++|++||++.++|.++..+.....|++|..
T Consensus 98 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~ 132 (138)
T 1wfm_A 98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred ECCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence 99999999999999999999986667778888743
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-17 Score=146.33 Aligned_cols=107 Identities=25% Similarity=0.448 Sum_probs=92.6
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcC-----------CceeeeecCCCCCCeEeeEEEEE-eeC--CCCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL-----------PSKKTTVKHKNLNPEWNEEYNFT-VRD--PESQ 324 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~-----------~~~kT~v~~~t~nP~w~e~f~f~-v~~--~~~~ 324 (525)
.|.|.|+|++|++|+.++..|.+||||++++.+... ..++|+++++|+||+|||+|.|. +.. ....
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~ 96 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence 689999999999999999999999999999987531 24689999999999999999997 532 2467
Q ss_pred eEEEEEEecCCCCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 325 AVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 325 ~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
.|.|+|||++..+++++||++.++|.++..+.....|++|.
T Consensus 97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 137 (142)
T 1rh8_A 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECB
T ss_pred EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECC
Confidence 89999999999999999999999999998766677888774
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-17 Score=139.63 Aligned_cols=108 Identities=19% Similarity=0.295 Sum_probs=92.4
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECC---eE
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG---EE 448 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~---~~ 448 (525)
....|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ ++
T Consensus 5 ~~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~ 59 (138)
T 1ugk_A 5 SSGLGTLFFSLEYNF-------------------------ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHK 59 (138)
T ss_dssp CCCCCEEEEEEEEEG-------------------------GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSE
T ss_pred CCccEEEEEEEEEEC-------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCce
Confidence 466899999999987 478999999999999873 5689999999964 57
Q ss_pred EEeeeecCCCCCcccceEEEE-ecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 449 RKTKHVKKNRDPRWEEEFQFM-LEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
++|+++++|.||+|||.|.|. +..... ...|.|+|||++. +++|++||++.|+|.++..+
T Consensus 60 ~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~----~~~~~~lG~~~i~l~~l~~~ 121 (138)
T 1ugk_A 60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR----FSRDDIIGEVLIPLSGIELS 121 (138)
T ss_dssp EECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS----SCCCCCCEEEEEECTTCCCT
T ss_pred EecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCC----CCCCcEEEEEEEehhHccCC
Confidence 899999999999999999995 654322 3589999999986 77899999999999998654
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=145.58 Aligned_cols=108 Identities=18% Similarity=0.281 Sum_probs=92.3
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC---CeEE
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEER 449 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~---~~~~ 449 (525)
....|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++. .+++
T Consensus 25 ~~~~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 79 (152)
T 1rsy_A 25 EEKLGKLQYSLDYDF-------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF 79 (152)
T ss_dssp -CCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCE
T ss_pred CCCceEEEEEEEEeC-------------------------CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceE
Confidence 456899999999986 478999999999999874 578999999994 4577
Q ss_pred EeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
||+++++|.||+|||.|.|.+.... ....|.|+|||++. +++|++||++.|+|.++..+
T Consensus 80 kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~ 139 (152)
T 1rsy_A 80 ETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFG 139 (152)
T ss_dssp ECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS----SSCCEEEEEEEEEGGGCCCS
T ss_pred eccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC----CCCCcEEEEEEEEchhccCC
Confidence 9999999999999999999886432 24689999999986 77899999999999998654
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-17 Score=144.57 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=93.1
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCC----CCCCCcEEEEEECC-----
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG----KHHTNPYARILFRG----- 446 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~----~~~~dPyv~v~l~~----- 446 (525)
...+|+|.+++.|.+ ..+.|.|+|++|+||+. .+.+||||++++..
T Consensus 6 ~~~~G~l~~sl~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~ 60 (148)
T 3fdw_A 6 IFVTGRIAFSLKYEQ-------------------------QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQ 60 (148)
T ss_dssp CCCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGG
T ss_pred CccceEEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCccc
Confidence 467899999999986 47899999999999985 35699999999973
Q ss_pred eEEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 447 EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 447 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
.+++|+++++|.||+|||+|.|.+..... ...|.|+|||++. +++|++||++.|+|.++..+
T Consensus 61 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~----~~~~~~iG~~~i~l~~l~~~ 123 (148)
T 3fdw_A 61 GKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGR----FGRNTFLGEAEIQMDSWKLD 123 (148)
T ss_dssp GEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECG----GGCEEEEEEEEEEHHHHHHH
T ss_pred CccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCC----CcCCcEEEEEEEEccccccc
Confidence 36799999999999999999999876533 3479999999986 67899999999999998544
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.6e-17 Score=140.63 Aligned_cols=108 Identities=19% Similarity=0.229 Sum_probs=91.5
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC---CeEE
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEER 449 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~---~~~~ 449 (525)
....|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++. .+++
T Consensus 9 ~~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 63 (141)
T 2d8k_A 9 RENLGRIQFSVGYNF-------------------------QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKL 63 (141)
T ss_dssp CCCCCEEEEEEEECS-------------------------SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEE
T ss_pred CceeeEEEEEEEEeC-------------------------CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccE
Confidence 456899999999976 478899999999999874 578999999995 3567
Q ss_pred EeeeecCCCCCcccceEEEEecCC--CCCCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~--~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
||+++++|.||+|||.|.|.+... .....|.|+|||++. +++|++||++.|+|.++..+
T Consensus 64 kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~ 124 (141)
T 2d8k_A 64 ETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR----FSRNDPIGEVSIPLNKVDLT 124 (141)
T ss_dssp ECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS----SSSCEEEEEEEEETTTSCTT
T ss_pred eCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC----CCCCcEEEEEEEEhhhhcCC
Confidence 999999999999999999985321 124689999999986 67899999999999998654
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-17 Score=142.18 Aligned_cols=115 Identities=20% Similarity=0.307 Sum_probs=93.9
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----e
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----E 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~ 447 (525)
....|+|++++.|.+ ..+.|.|+|++|+||+.. + +||||++++.+ .
T Consensus 7 ~~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~ 60 (142)
T 2dmg_A 7 GSPLGQIQLTIRHSS-------------------------QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSG 60 (142)
T ss_dssp SCSSCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSS
T ss_pred CCCcceEEEEEEEeC-------------------------CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCC
Confidence 567899999999986 478999999999999863 5 99999999943 5
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCC--CCccceEEEEEccccccchhhhcccCCCCC
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLH--PKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~--~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
+++|+++++|.||+|||+|.|.+..... ...|.|+|||++. ++ .|++||++.|+|.++..+. ...+||.
T Consensus 61 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~~~iG~~~i~l~~~~~~~----~~~~W~~ 132 (142)
T 2dmg_A 61 RRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGG----FLSKDKGLLGKVLVALASEELAK----GWTQWYD 132 (142)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCC----SSCCSCCCCEEEEEECCCSTTTT----CBCCBCC
T ss_pred cccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCC----ccccCCcEEEEEEEecccccccc----cccceee
Confidence 6799999999999999999999864211 2489999999985 44 3579999999999975432 4566763
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-16 Score=163.69 Aligned_cols=176 Identities=21% Similarity=0.253 Sum_probs=133.4
Q ss_pred eeEEEEEcCCCCe-EEEEEEEcCcCccc-CcchHHHHHHHHHHHHhhcccC-----CccccccccCC---------C---
Q 009797 192 FANIYVSLMEKPH-VDFGLKLVGADLMS-IPGLYRFVQELIKTQVANMYLW-----PKTLEVPILDP---------S--- 252 (525)
Q Consensus 192 ~~~~~~sf~~~P~-id~~~~~~g~~~~~-iP~l~~~i~~~i~~~l~~~~v~-----P~~~~~~i~~~---------~--- 252 (525)
+..|.=|+...|. |+|.+.|+ .++.. -+.....++.++.+++...-.+ |..-..+.+.+ .
T Consensus 304 ~~~W~~Sv~~~P~~I~~~l~PI-~~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~~~l~g~~C~C~C~~~~~t 382 (540)
T 3nsj_A 304 FSTWTASLPSNPGLVDYSLEPL-HTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVT 382 (540)
T ss_dssp HHHHHHHTTTSCEEEEEEEEEG-GGGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTEEECSSCTTCEEESCTTTB
T ss_pred HHHHHHHHhhCCceEEEEEEEH-HHhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCCccCCCCceEeeCCCCCCc
Confidence 4556666667774 59999998 45443 4566788999999998877666 43221111211 1
Q ss_pred ----ccCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeC-CCCCeEE
Q 009797 253 ----KAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-PESQAVE 327 (525)
Q Consensus 253 ----~~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~-~~~~~L~ 327 (525)
.......|.|+|+|++|++|+. |..|++||||+|++++.. .+|+++++++||+|||+|.|.+.. ...+.|+
T Consensus 383 ~~~~C~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~---~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~ 458 (540)
T 3nsj_A 383 NQDCCPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQE---FRTGVVWNNNNPRWTDKMDFENVLLSTGGPLR 458 (540)
T ss_dssp CGGGCBSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEE---EECCCBCSCSSCBCCCCEEEEEEETTTCCCEE
T ss_pred ccccccccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEe---eeeeeecCCCCCCCCeEEEEEEecCCCCCEEE
Confidence 1334568999999999999998 989999999999998654 799999999999999999998653 3578899
Q ss_pred EEEEecCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 328 LAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 328 i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
|+|||+|..++||+||++.++|.. + ..+.|..+ ..|.|+++++..
T Consensus 459 ~~V~D~D~~~~dD~LG~~~~~L~~---g-~~~~~~~l-------------~~G~l~~~~~~~ 503 (540)
T 3nsj_A 459 VQVWDADYGWDDDLLGSCDRSPHS---G-FHEVTCEL-------------NHGRVKFSYHAK 503 (540)
T ss_dssp EEEEECCSSSCCEEEEEEEECCCS---E-EEEEEEEC-------------SSSEEEEEEEEE
T ss_pred EEEEECCCCCCCCEEEEEEEEeeC---C-cEEEEEEc-------------CCeEEEEEEEEE
Confidence 999999999999999999999882 2 34455543 258888887654
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=141.97 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=88.7
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC--Ce---
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--GE--- 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~--~~--- 447 (525)
....|+|.+++.|.| ..+.|.|+|++|+||+.. +.+||||++++. +.
T Consensus 13 ~~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 67 (153)
T 1w15_A 13 PSGRGELLVSLCYQS-------------------------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRIS 67 (153)
T ss_dssp ---CCEEEEEEEEET-------------------------TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEE
T ss_pred CccccEEEEEEEEcC-------------------------CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEec
Confidence 457899999999987 478999999999999874 578999999994 33
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
++||+++++|.||+|||+|+|.+...... ..|.|+|||++. +++|++||++.|++.+...+
T Consensus 68 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~----~~~~~~lG~~~i~l~~~~~~ 129 (153)
T 1w15_A 68 KKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER----GSRNEVIGRLVLGATAEGSG 129 (153)
T ss_dssp EEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT----TSCCEEEEEEEESTTCCSHH
T ss_pred eEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCC----CCCCcEEEEEEECCCCCchH
Confidence 56999999999999999999999865433 589999999985 77899999999999884433
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-17 Score=147.46 Aligned_cols=108 Identities=25% Similarity=0.422 Sum_probs=93.7
Q ss_pred ceeEEEEEEEeccCCcccCc-CCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEE-ec
Q 009797 258 PVGILHVKVVKAMNLKKKDL-LGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY-DW 333 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~-d~ 333 (525)
..|.|.|+|++|++|+.+|. .|.+||||++++.+.. ...++|+++++++||+|||+|.|.+.. ....|.|+|| |+
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~ 106 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY 106 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence 47899999999999999985 6899999999997542 135799999999999999999999854 4678999999 99
Q ss_pred CCCCCCCccEEEEEECcccCCCCCeeEEEeccc
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 366 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 366 (525)
+.+++|++||++.++|.++..+.....|++|..
T Consensus 107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~ 139 (171)
T 2q3x_A 107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFP 139 (171)
T ss_dssp STTCSSEEEEEEEECGGGSCTTSCEEEEEECBC
T ss_pred CCCCCCCEEEEEEEEHHHcccCCCcceeEECCC
Confidence 999999999999999999987777888988854
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-17 Score=143.12 Aligned_cols=110 Identities=19% Similarity=0.352 Sum_probs=92.5
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeC---CCCCeEEEEE
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAV 330 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~v 330 (525)
....+.|.|+|++|++|+.++..|.+||||++++.+.. ...++|+++++++||+|||+|.|.+.. .....|.|+|
T Consensus 17 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V 96 (141)
T 1v27_A 17 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL 96 (141)
T ss_dssp ETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEE
T ss_pred eCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEE
Confidence 34568999999999999999989999999999985322 345799999999999999999999532 2357899999
Q ss_pred EecCCCCC--CCccEEEEEECcccCCCCCeeEEEeccc
Q 009797 331 YDWEQVGK--HDKMGMNVVPLKELTPEEPSVKTLDLLK 366 (525)
Q Consensus 331 ~d~~~~~~--d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 366 (525)
||++..++ +++||++.++|.++.... ...|++|..
T Consensus 97 ~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~ 133 (141)
T 1v27_A 97 WDQARVREEESEFLGEILIELETALLDD-EPHWYKLQT 133 (141)
T ss_dssp EEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBC
T ss_pred EECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcc
Confidence 99999887 999999999999987654 678888753
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-17 Score=144.38 Aligned_cols=108 Identities=22% Similarity=0.268 Sum_probs=90.5
Q ss_pred CCceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC--CCCCcEEEEEECC-----e
Q 009797 375 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK--HHTNPYARILFRG-----E 447 (525)
Q Consensus 375 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~--~~~dPyv~v~l~~-----~ 447 (525)
.....|++.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ .
T Consensus 9 ~~~~~G~~~lsL~y~~-------------------------~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~ 63 (153)
T 3fbk_A 9 SHKVQGAGQLRLSIDA-------------------------QDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLR 63 (153)
T ss_dssp ----CCCCEEEEEEEE-------------------------SSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTT
T ss_pred ccCCCCEEEEEEEEEC-------------------------CCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCcc
Confidence 3578999999999987 588999999999999874 5789999999943 4
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCC-CccceEEEEEcccccc
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP-KVLFQFYFIFYLVHRF 511 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~-d~~lG~v~I~l~~~~~ 511 (525)
+++|+++++|.||+|||+|.|.+........|.|+|||++. +++ |++||++.|+|.++..
T Consensus 64 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~----~~~~d~~lG~~~i~l~~l~~ 124 (153)
T 3fbk_A 64 HQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRAS----QSRQSGLIGCMSFGVKSLLT 124 (153)
T ss_dssp CEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCS----SGGGCEEEEEEEEEHHHHTC
T ss_pred EEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCC----CCCCCcEEEEEEEEHHHhcC
Confidence 67999999999999999999999544345679999999975 555 8999999999999853
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-17 Score=142.08 Aligned_cols=107 Identities=23% Similarity=0.421 Sum_probs=90.3
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC-----Ce
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GE 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~-----~~ 447 (525)
+...|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++. .+
T Consensus 4 ~~~~G~i~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 58 (141)
T 1v27_A 4 GSSGGQLSIKLWFDK-------------------------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKN 58 (141)
T ss_dssp CCCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSS
T ss_pred CCcccEEEEEEEEeC-------------------------CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCc
Confidence 567899999999986 468999999999999874 468999999993 45
Q ss_pred EEEeeeecCCCCCcccceEEEEecC-CC-CCCeEEEEEEEcccCccCCCC--CccceEEEEEcccccc
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFMLEE-PP-TNDRLHVEVCSVSSRIGLLHP--KVLFQFYFIFYLVHRF 511 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~-~~-~~~~l~i~V~d~~~~~~~~~~--d~~lG~v~I~l~~~~~ 511 (525)
+++|+++++|.||+|||+|+|.+.. .. ....|.|+|||++. +++ +++||++.|+|.++..
T Consensus 59 ~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~----~~~~~~~~lG~~~i~l~~l~~ 122 (141)
T 1v27_A 59 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR----VREEESEFLGEILIELETALL 122 (141)
T ss_dssp CCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCS----SSSCCBCCCEEEEEEGGGCCC
T ss_pred ceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCC----CcCCCCceEEEEEEEccccCC
Confidence 6799999999999999999999532 21 23599999999986 565 9999999999999753
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.4e-17 Score=142.44 Aligned_cols=111 Identities=20% Similarity=0.361 Sum_probs=93.0
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCC-CCCeEEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP-ESQAVELAVY 331 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~v~ 331 (525)
+....|.|.|+|++|++|+..+ .|.+||||++++.+. ....++|+++++++||+|||+|.|.+... ....|.|+||
T Consensus 22 y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~ 100 (153)
T 3fbk_A 22 IDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVW 100 (153)
T ss_dssp EEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEE
Confidence 4556899999999999999998 699999999999543 23457999999999999999999998422 1356999999
Q ss_pred ecCCCCC-CCccEEEEEECcccCC-CCCeeEEEeccc
Q 009797 332 DWEQVGK-HDKMGMNVVPLKELTP-EEPSVKTLDLLK 366 (525)
Q Consensus 332 d~~~~~~-d~~lG~~~i~L~~l~~-~~~~~~~~~l~~ 366 (525)
|++..++ |++||++.++|.++.. +.....|++|..
T Consensus 101 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~ 137 (153)
T 3fbk_A 101 NRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG 137 (153)
T ss_dssp ECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBC
T ss_pred eCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCC
Confidence 9998876 9999999999999985 667778888754
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.7e-17 Score=141.17 Aligned_cols=108 Identities=17% Similarity=0.337 Sum_probs=91.3
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----e
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----E 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~ 447 (525)
....|+|.+++.|.+ ..+.|.|+|++|++|+.. +.+||||++++.+ .
T Consensus 12 ~~~~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 66 (142)
T 2chd_A 12 ATTLGALEFSLLYDQ-------------------------DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSN 66 (142)
T ss_dssp --CCCEEEEEEEEEG-------------------------GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGG
T ss_pred CCccceEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcc
Confidence 467899999999986 478999999999999874 5789999999976 5
Q ss_pred EEEeeeecCCCCCcccceEEEE-ecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFM-LEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
++||+++++|.||+|||+|.|. +..... ...|.|+|||++. +++|++||++.|+|.++..+
T Consensus 67 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~----~~~d~~iG~~~i~l~~l~~~ 129 (142)
T 2chd_A 67 KLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK----FGHNEFIGETRFSLKKLKAN 129 (142)
T ss_dssp EEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECT----TSCEEEEEEEEEEGGGCCTT
T ss_pred eeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCC----CCCCcEEEEEEEEHHHcCCC
Confidence 7899999999999999999998 543211 2589999999986 67899999999999998644
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.7e-17 Score=142.03 Aligned_cols=106 Identities=22% Similarity=0.363 Sum_probs=90.2
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----e
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----E 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~ 447 (525)
....|+|.+++.|. .+.|.|+|++|+||+.. +.+||||++++.+ .
T Consensus 16 ~~~~G~l~~~l~~~---------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 68 (149)
T 1a25_A 16 MERRGRIYIQAHID---------------------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSES 68 (149)
T ss_dssp -CTTCEEEEEEEES---------------------------SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSS
T ss_pred CCcceEEEEEEEec---------------------------CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcc
Confidence 34579999999872 46799999999999864 5789999999973 5
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
++||+++++|.||+|||+|+|.+........|.|+|||++. +++|++||++.|+|.++..+
T Consensus 69 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~ 129 (149)
T 1a25_A 69 KQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL----TSRNDFMGSLSFGISELQKA 129 (149)
T ss_dssp CEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS----SSCCEEEEEEEEEHHHHTTC
T ss_pred eEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC----CCCCCEEEEEEEEHHHhCcC
Confidence 67999999999999999999999764344689999999986 67899999999999998543
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=135.12 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=74.6
Q ss_pred CceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecC-CCCCCeEeeEEEEEeeCCCCCeEEEEEEecCC
Q 009797 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ 335 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~ 335 (525)
.+.|.|+|+|++|++++. .|.+||||+++ . +. .+|+++. ++.||+|||+|.|.+.+. ...|.|+|||++
T Consensus 2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d- 71 (131)
T 2cjt_A 2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V-QN---VKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG- 71 (131)
T ss_dssp CCCEEEEEEEEEEECSSC---GGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-
T ss_pred CcceEEEEEEEEeECCCC---CCCcCeEEEEE-e-cC---EEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-
Confidence 357999999999998853 57899999999 2 22 3555554 799999999999999864 567999999999
Q ss_pred CCCCCccEEEEEECcccCCC
Q 009797 336 VGKHDKMGMNVVPLKELTPE 355 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~ 355 (525)
.++|++||++.++|.++...
T Consensus 72 ~~~dd~iG~~~i~l~~l~~~ 91 (131)
T 2cjt_A 72 LIWDTMVGTVWIPLRTIRQS 91 (131)
T ss_dssp SSCEEEEEEEEEEGGGSCBC
T ss_pred CCCCCeEEEEEEEHHHhhhc
Confidence 88999999999999998654
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=139.73 Aligned_cols=108 Identities=17% Similarity=0.279 Sum_probs=92.8
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEE---CCeEE
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF---RGEER 449 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l---~~~~~ 449 (525)
....|+|.+++.|.+ ..+.|.|+|++|++|+.. +.+||||++++ +.+++
T Consensus 17 ~~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~ 71 (143)
T 3f04_A 17 VEKLGKLQYSLDYDF-------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF 71 (143)
T ss_dssp CCCCCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCE
T ss_pred ccCeEEEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccE
Confidence 356899999999986 478999999999999874 57999999999 34578
Q ss_pred EeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
+|+++++|.||+|||+|.|.+.... ....|.|+|||++. +++|++||++.|+|.++..+
T Consensus 72 kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~ 131 (143)
T 3f04_A 72 ETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFG 131 (143)
T ss_dssp ECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS----SSCCEEEEEEEEEGGGCCTT
T ss_pred ECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC----CCCCceEEEEEEEHHHccCC
Confidence 9999999999999999999987432 23689999999986 77899999999999998654
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=140.83 Aligned_cols=98 Identities=39% Similarity=0.637 Sum_probs=85.0
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCCC--CCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v 330 (525)
+....|.|.|+|++|+||+..+..|.+||||++++.+. ....++|+++++++||.|||+|.|.+.... ...|.|+|
T Consensus 20 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V 99 (159)
T 1tjx_A 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 99 (159)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEE
Confidence 34567899999999999999998899999999999743 223579999999999999999999986432 46799999
Q ss_pred EecCCCCCCCccEEEEEECccc
Q 009797 331 YDWEQVGKHDKMGMNVVPLKEL 352 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l 352 (525)
||++.+++|++||++.+++..+
T Consensus 100 ~d~d~~~~~~~iG~~~i~l~~~ 121 (159)
T 1tjx_A 100 LDYDKIGKNDAIGKVFVGYNST 121 (159)
T ss_dssp EECCSSSCCEEEEEEEEETTCC
T ss_pred EECCCCCCCceEEEEEECCCCC
Confidence 9999999999999999999864
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=137.94 Aligned_cols=98 Identities=31% Similarity=0.499 Sum_probs=85.2
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCC--CCeEEEEEE
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVY 331 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~ 331 (525)
....|.|.|+|++|++|+..+..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+.... ...|.++||
T Consensus 12 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~ 91 (138)
T 3n5a_A 12 NPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVM 91 (138)
T ss_dssp ETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEE
T ss_pred cCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEE
Confidence 34679999999999999999988999999999997532 23578999999999999999999986532 368999999
Q ss_pred ecCCCCCCCccEEEEEECcccC
Q 009797 332 DWEQVGKHDKMGMNVVPLKELT 353 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~ 353 (525)
|++..++|++||++.+++.++.
T Consensus 92 d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 92 DKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp ECCSSSCCEEEEEEEESSSSCH
T ss_pred ECCCCCCCcEEEEEEEccccCC
Confidence 9999999999999999999754
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.2e-17 Score=141.93 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=80.2
Q ss_pred CCcceEEEEEEeeecCCCC-------------CCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEE
Q 009797 415 AGGGLLVVIVHEAQDVEGK-------------HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480 (525)
Q Consensus 415 ~~~g~L~V~v~~a~~L~~~-------------~~~dPyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~ 480 (525)
...|.|+|+|.+|+||+.. +.+||||++.+++++ .||+++++|.||+|||.|+|.+.+. ..|.
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~---~~L~ 102 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG---GHLE 102 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC---CEEE
Confidence 4678999999999999863 358999999999876 5999999999999999999999753 5899
Q ss_pred EEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 481 VEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 481 i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
|+|||++. +++|++||++.|+|.++..+
T Consensus 103 ~~V~D~d~----~~~dd~iG~~~i~l~~l~~~ 130 (157)
T 2fk9_A 103 LAVFHETP----LGYDHFVANCTLQFQELLRT 130 (157)
T ss_dssp EEEEECCS----SSSCEEEEEEEEEHHHHHHH
T ss_pred EEEEECCC----CCCCCEEEEEEEEHHHhhcc
Confidence 99999975 78899999999999998644
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-16 Score=139.51 Aligned_cols=99 Identities=29% Similarity=0.525 Sum_probs=86.5
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v 330 (525)
+....+.|.|+|++|++|+.++..|.+||||++++.+.. ...++|+++++++||+|||+|.|.+... ....|.|+|
T Consensus 32 y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V 111 (166)
T 2cm5_A 32 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV 111 (166)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEE
Confidence 445689999999999999999988999999999998632 3457999999999999999999998643 256899999
Q ss_pred EecCCCCCCCccEEEEEECcccC
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELT 353 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~ 353 (525)
||++..++|++||++.+++.++.
T Consensus 112 ~d~d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 112 WDYDIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp EECCSSSCCEEEEEEEEETTCCH
T ss_pred EECCCCCCCcEEEeEEEecccCC
Confidence 99999999999999999999863
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-16 Score=134.52 Aligned_cols=94 Identities=23% Similarity=0.379 Sum_probs=83.4
Q ss_pred CCcceEEEEEEeeecCCCC--CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEcccCc
Q 009797 415 AGGGLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRI 490 (525)
Q Consensus 415 ~~~g~L~V~v~~a~~L~~~--~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~i~V~d~~~~~ 490 (525)
...|.|.|+|++|+||+.. +.+||||++++++++++|++++++.||+|||.|+|.+..+. ....|.|+|||++.
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~-- 81 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET-- 81 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC--
T ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC--
Confidence 4678999999999999874 47999999999999999999999999999999999997642 24699999999986
Q ss_pred cCCCCCccceEEEEEccccccc
Q 009797 491 GLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 491 ~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
+++|++||++.|++.++..+
T Consensus 82 --~~~~~~lG~~~i~l~~l~~~ 101 (140)
T 2dmh_A 82 --IGQNKLIGTATVALKDLTGD 101 (140)
T ss_dssp --SSSCCCCEEEEEEGGGTCSS
T ss_pred --CCCCceEEEEEEEHHHhccC
Confidence 67899999999999998554
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=140.22 Aligned_cols=97 Identities=34% Similarity=0.470 Sum_probs=79.0
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCC--CCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v 330 (525)
+....+.|.|+|++|++|+.++..|.+||||++++.+.. ...++|+++++++||+|||+|.|.+.... ...|.|+|
T Consensus 25 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V 104 (153)
T 1w15_A 25 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV 104 (153)
T ss_dssp EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred EcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEE
Confidence 344679999999999999999988999999999995432 23469999999999999999999987543 36899999
Q ss_pred EecCCCCCCCccEEEEEECcc
Q 009797 331 YDWEQVGKHDKMGMNVVPLKE 351 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~ 351 (525)
||++.+++|++||++.+++.+
T Consensus 105 ~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 105 LDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp EECCTTSCCEEEEEEEESTTC
T ss_pred EeCCCCCCCcEEEEEEECCCC
Confidence 999999999999999999988
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.4e-16 Score=130.31 Aligned_cols=119 Identities=16% Similarity=0.262 Sum_probs=100.2
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecC-CCCCCeEeeEEEEEeeCC--CCCeEEEEEEecCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQ 335 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~ 335 (525)
.-.|+|+|.+|.+|+ |++|||+++.+.+.+ ++|++++ ++.||+|||.|.|.+..+ .+..|.+.|||+++
T Consensus 20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k---~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~ 91 (144)
T 3l9b_A 20 HMALIVHLKTVSELR-----GRADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91 (144)
T ss_dssp CEEEEEEEEEEESCC-----SCEEEEEEEEETTEE---EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT
T ss_pred cEEEEEEEEEecCCC-----CCCCCeEEEEEeccc---eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc
Confidence 457999999999998 578999999997655 6999998 699999999999999754 36789999999999
Q ss_pred CCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
++++++||++.++|+++..+.....+..|.. .++....++|.+++.|.|.
T Consensus 92 v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD------~n~~~~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 92 VFSNKLIGTFRMVLQKVVEENRVEVSDTLID------DNNAIIKTSLSMEVRYQAA 141 (144)
T ss_dssp TSCCEEEEEEEEESHHHHHHSEEEEEEEEEC------TTSCEEEEEEEEEEEEEET
T ss_pred ccCCCEEEEEEEEhHHhccCCeEEEeecccC------CCCCccccEEEEEEEecCC
Confidence 9999999999999999988766555555532 2234556899999999995
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-16 Score=134.98 Aligned_cols=93 Identities=26% Similarity=0.355 Sum_probs=83.6
Q ss_pred CCcceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc
Q 009797 415 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 491 (525)
Q Consensus 415 ~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~ 491 (525)
...|.|.|+|++|++|+.. +.+||||++++++++++|++++++.||+|||+|.|.+.+. .+.|.|+|||++.
T Consensus 10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~--~~~l~i~V~d~d~--- 84 (133)
T 2ep6_A 10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDG--- 84 (133)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEET---
T ss_pred CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC--CCEEEEEEEECCC---
Confidence 3689999999999999864 5789999999999999999999999999999999999864 4689999999986
Q ss_pred CCCCCccceEEEEEccccccch
Q 009797 492 LLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 492 ~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
+++|++||++.|++.++..+.
T Consensus 85 -~~~~~~lG~~~i~l~~l~~~~ 105 (133)
T 2ep6_A 85 -DKPPDFLGKVAIPLLSIRDGQ 105 (133)
T ss_dssp -TEEEEECCBCEEEGGGCCSSC
T ss_pred -CCCCCeeEEEEEEHHHccCCC
Confidence 678999999999999986543
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-16 Score=139.97 Aligned_cols=113 Identities=15% Similarity=0.294 Sum_probs=92.3
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECCe-----
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE----- 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~----- 447 (525)
....|+|++++.|. .|.|.|+|++|+||+.. +.+||||++++.+.
T Consensus 3 ~~~~G~i~~~l~y~---------------------------~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~ 55 (142)
T 1rh8_A 3 HPITGEIQLQINYD---------------------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVM 55 (142)
T ss_dssp CCCCCEEEEEEEEE---------------------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCE
T ss_pred CCcceEEEEEEEEc---------------------------CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCccc
Confidence 35689999999984 46899999999999874 57899999999863
Q ss_pred ---------EEEeeeecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhh
Q 009797 448 ---------ERKTKHVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECC 516 (525)
Q Consensus 448 ---------~~kT~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~ 516 (525)
+++|+++++|.||+|||.|.|. +.... ....|.|+|||++. +++|++||++.|+|.++..+
T Consensus 56 ~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~----~~~~~~lG~~~i~l~~l~~~---- 127 (142)
T 1rh8_A 56 VVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDR----FSSNDFLGEVLIDLSSTSHL---- 127 (142)
T ss_dssp ECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECS----SSCEEEEEEEEEETTSCGGG----
T ss_pred ccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCC----CCCCceEEEEEEeccccccC----
Confidence 3589999999999999999997 54211 24689999999986 77899999999999997543
Q ss_pred cccCCCC
Q 009797 517 RMKNDPF 523 (525)
Q Consensus 517 ~~~~~~~ 523 (525)
.....||
T Consensus 128 ~~~~~W~ 134 (142)
T 1rh8_A 128 DNTPRWY 134 (142)
T ss_dssp TTCCEEE
T ss_pred CCCCeEE
Confidence 2344565
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=9e-16 Score=131.03 Aligned_cols=92 Identities=16% Similarity=0.363 Sum_probs=80.2
Q ss_pred CcceEEEEEEeeecCCCC------CCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009797 416 GGGLLVVIVHEAQDVEGK------HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~------~~~dPyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
+.|.|.|+|++|+||+.. +.+||||++++++ +++||++++++.||+|||+|+|.+..+ ....|.|+|||+
T Consensus 1 S~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~ 79 (126)
T 1rlw_A 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDA 79 (126)
T ss_dssp CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEEC
T ss_pred CCcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCC-CCCEEEEEEEEC
Confidence 368999999999999972 6799999999986 678999999999999999999999764 456999999999
Q ss_pred ccCccCCCCCccceEEEEEccccccch
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
+. + +|++||++.|+|.++..+.
T Consensus 80 d~----~-~~~~iG~~~i~l~~l~~~~ 101 (126)
T 1rlw_A 80 NY----V-MDETLGTATFTVSSMKVGE 101 (126)
T ss_dssp CS----S-CCEEEEEEEEEGGGSCTTC
T ss_pred CC----C-CCceeEEEEEEHHHccCCC
Confidence 75 4 4899999999999986543
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-16 Score=139.94 Aligned_cols=104 Identities=20% Similarity=0.293 Sum_probs=88.3
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEECCe----
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRGE---- 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l~~~---- 447 (525)
....|+|.+++.|. .+.|.|+|++|+||+.. +.+||||++++.+.
T Consensus 15 ~~~~G~l~~~l~y~---------------------------~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~ 67 (171)
T 2q3x_A 15 TPAMGDIQIGMEDK---------------------------KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACI 67 (171)
T ss_dssp --CCCEEEEEEEEE---------------------------TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEE
T ss_pred CCCccEEEEEEEEC---------------------------CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccc
Confidence 35679999999982 57899999999999863 57899999998642
Q ss_pred -EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEE-EcccCccCCCCCccceEEEEEccccccc
Q 009797 448 -ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVC-SVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 448 -~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~-d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
++||+++++|.||+|||+|+|.+.. ....|.|+|| |++. +++|++||++.|+|.++..+
T Consensus 68 ~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~L~~~V~~d~d~----~~~d~~iG~~~i~l~~l~~~ 128 (171)
T 2q3x_A 68 AKKKTRIARKTLDPLYQQSLVFDESP--QGKVLQVIVWGDYGR----MDHKCFMGVAQILLEELDLS 128 (171)
T ss_dssp EEEECCCCCSCSSCEEEEEEECSSCC--TTEEEEEEEEEECST----TCSSEEEEEEEECGGGSCTT
T ss_pred cceeCccCCCCCCCCCCcEEEEEecC--CCCEEEEEEEEcCCC----CCCCCEEEEEEEEHHHcccC
Confidence 6699999999999999999999864 3469999999 8875 77899999999999998644
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=131.10 Aligned_cols=93 Identities=22% Similarity=0.356 Sum_probs=79.3
Q ss_pred CcceEEEEEEeeecCCC--CCCCCcEEEEEE-----CCeEEEeeeecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEc
Q 009797 416 GGGLLVVIVHEAQDVEG--KHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSV 486 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~--~~~~dPyv~v~l-----~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~i~V~d~ 486 (525)
..+.|.|+|++|+||+. .+.+||||++++ ...++||+++++|.||+|||+|.|. +.... ....|.|+|||+
T Consensus 18 ~~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~ 97 (134)
T 2b3r_A 18 RNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSA 97 (134)
T ss_dssp ETTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEEC
T ss_pred cCCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEEC
Confidence 36789999999999986 357999999999 3456799999999999999999999 76321 235999999999
Q ss_pred ccCccCCCCCccceEEEEEccccccc
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
+. ++++++||++.|+|.++..+
T Consensus 98 d~----~~~~~~lG~~~i~l~~l~~~ 119 (134)
T 2b3r_A 98 ES----LRENFFLGGITLPLKDFNLS 119 (134)
T ss_dssp CS----SSCCEEEEEEEEEGGGSCTT
T ss_pred CC----CCCCcEEEEEEEEhhhccCC
Confidence 86 77899999999999998654
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=162.32 Aligned_cols=121 Identities=26% Similarity=0.461 Sum_probs=102.6
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCC
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ 335 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~ 335 (525)
....|.|+|+|++|++|+++|..|.+||||++++++.. ++|+++++|+||.|||+|.|.+.......|.|+|||+|.
T Consensus 383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~---~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~ 459 (510)
T 3jzy_A 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQS---YTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ 459 (510)
T ss_dssp ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCS
T ss_pred CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCee---ccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC
Confidence 34679999999999999999999999999999997644 699999999999999999999987777889999999999
Q ss_pred CCCCCccEEEEEECcccCCCCC----eeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 336 VGKHDKMGMNVVPLKELTPEEP----SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~~~----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
.++|++||++.+++.++..+.. ...|+.+. +...|+|++++.+.
T Consensus 460 ~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~----------~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 460 FSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH----------EVPTGEVWVRFDLQ 507 (510)
T ss_dssp SSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB----------SSSSCEEEEEEEEE
T ss_pred CCCCCceEEEEEEHHHhccccCCCCceeeeecCC----------CCCCceEEEEEEEE
Confidence 9999999999999999976432 45666542 34679998888764
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=131.81 Aligned_cols=95 Identities=21% Similarity=0.309 Sum_probs=81.4
Q ss_pred CCCcceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccC-
Q 009797 414 PAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSR- 489 (525)
Q Consensus 414 ~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~- 489 (525)
....|.|.|+|++|++|+.. +.+||||++++++++++|+++++|.||+|||.|.|.+..+ .+.|.|+|||++..
T Consensus 13 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~d~d~~~ 90 (148)
T 3kwu_A 13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS--SDRIKVRVLDEDDDI 90 (148)
T ss_dssp --CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST--TCEEEEEEEECCCSH
T ss_pred cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC--CCEEEEEEEECCCCc
Confidence 34689999999999999874 5799999999999999999999999999999999999864 36899999999851
Q ss_pred -------ccCCCCCccceEEEEEcccccc
Q 009797 490 -------IGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 490 -------~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
.+ .++|++||++.|+|.++..
T Consensus 91 ~~~~~~~~~-~~~~~~lG~~~i~l~~l~~ 118 (148)
T 3kwu_A 91 KSRVKQRFK-RESDDFLGQTIIEVRTLSG 118 (148)
T ss_dssp HHHHHTTTS-SCSSEEEEEEEEEGGGCCS
T ss_pred ccccccccc-CCCCccEEEEEEEHHHCcC
Confidence 00 1689999999999999843
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=132.68 Aligned_cols=95 Identities=21% Similarity=0.308 Sum_probs=80.5
Q ss_pred CCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC------eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEE
Q 009797 414 PAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG------EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVC 484 (525)
Q Consensus 414 ~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~------~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~ 484 (525)
....+.|.|+|++|+||+.. +.+||||++++.+ ..++|+++++|.||+|||.|.|.+... ...|.|+||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~l~~~V~ 93 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ--QHRLLFEVF 93 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT--TCEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC--CCEEEEEEE
Confidence 34789999999999999864 5789999999974 466999999999999999999999863 468999999
Q ss_pred EcccCccCCCCCccceEEEEEccccccchh
Q 009797 485 SVSSRIGLLHPKVLFQFYFIFYLVHRFKQE 514 (525)
Q Consensus 485 d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~ 514 (525)
|++. +++|++||++.|+|.++..+..
T Consensus 94 d~d~----~~~d~~iG~~~i~l~~l~~~~~ 119 (153)
T 3b7y_A 94 DENR----LTRDDFLGQVDVPLYPLPTENP 119 (153)
T ss_dssp ECCS----SSCCEEEEEEEEECCSCCBCCT
T ss_pred ECCC----CcCCCeeEEEEEEHHHcccCCC
Confidence 9975 7789999999999999866543
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=130.00 Aligned_cols=89 Identities=19% Similarity=0.304 Sum_probs=81.2
Q ss_pred CCcceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeec-CCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc
Q 009797 415 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI 490 (525)
Q Consensus 415 ~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 490 (525)
...|.|.|+|++|++|+.. +.+||||++++++++++|++++ ++.||+|||+|+|.+.+ ....|.|+|||++.
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~~l~~~V~d~~~-- 82 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKDV-- 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSSS--
T ss_pred CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC--CCCEEEEEEEECCC--
Confidence 4689999999999999874 4799999999999999999998 89999999999999986 35699999999975
Q ss_pred cCCCCCccceEEEEEcccc
Q 009797 491 GLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 491 ~~~~~d~~lG~v~I~l~~~ 509 (525)
+++|++||++.|+|.++
T Consensus 83 --~~~d~~lG~~~i~l~~l 99 (136)
T 1wfj_A 83 --GTEDDAVGEATIPLEPV 99 (136)
T ss_dssp --CTTTCCSEEEEEESHHH
T ss_pred --CCCCceEEEEEEEHHHh
Confidence 77899999999999987
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=132.13 Aligned_cols=90 Identities=17% Similarity=0.221 Sum_probs=79.1
Q ss_pred CcceEEEEEEeeecCCCCC--------------CCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEE
Q 009797 416 GGGLLVVIVHEAQDVEGKH--------------HTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~~--------------~~dPyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~ 480 (525)
..|.|.|+|++|+||+..+ .+||||++++++.. .+|+++++|.||+|||.|+|.+.+. ..|.
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~---~~L~ 80 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIE 80 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC---CEEE
Confidence 4689999999999998632 29999999998876 4999999999999999999999764 6899
Q ss_pred EEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 481 VEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 481 i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
|+|||++. +++|++||++.|++.++...
T Consensus 81 ~~V~d~d~----~~~dd~iG~~~i~l~~l~~~ 108 (136)
T 1gmi_A 81 LAVFHDAP----IGYDDFVANCTIQFEELLQN 108 (136)
T ss_dssp EEEEECCS----SSSCEEEEEEEEEHHHHTST
T ss_pred EEEEeCCC----CCCCCEEEEEEEEHHHhccc
Confidence 99999986 77899999999999998653
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.9e-15 Score=130.72 Aligned_cols=89 Identities=19% Similarity=0.315 Sum_probs=75.1
Q ss_pred CceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecC-CCCCCeEeeEEEEEeeCCCCCeEEEEEEecCC
Q 009797 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ 335 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~ 335 (525)
.+.+.|+|+|++|++++ ..|.+||||+++ . +. .+|+++. ++.||+|||+|.|.+.+. ...|.|+|||++
T Consensus 11 g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d- 80 (167)
T 2cjs_A 11 GILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V-QN---VESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG- 80 (167)
T ss_dssp SCCCEEEEEEEEEECSS---CGGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-
T ss_pred CceEEEEEEEEEEECCC---CCCCCCeEEEEE-e-cc---eEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-
Confidence 35789999999999884 257899999999 2 22 3666665 699999999999999864 567999999999
Q ss_pred CCCCCccEEEEEECcccCCC
Q 009797 336 VGKHDKMGMNVVPLKELTPE 355 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~ 355 (525)
.++|++||++.++|.++...
T Consensus 81 ~~~dd~iG~~~i~L~~l~~~ 100 (167)
T 2cjs_A 81 LIWDTMVGTVWIPLRTIRQS 100 (167)
T ss_dssp SSCCEEEEEEEEEGGGSCBC
T ss_pred CCCCceEEEEEEEHHHhccc
Confidence 88999999999999998654
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.5e-15 Score=133.41 Aligned_cols=95 Identities=20% Similarity=0.275 Sum_probs=77.6
Q ss_pred CCcceEEEEEEeeecCCCC---CCCCcEEEEEECC------eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEE
Q 009797 415 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG------EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS 485 (525)
Q Consensus 415 ~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~------~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d 485 (525)
...|.|.|+|++|++|+.. +.+||||++++.+ ++++|++++++.||+|||.|.|.+... ...|.|+|||
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~L~~~V~d 82 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ--RHRILFEVFD 82 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT--TCEEEEEEEE
T ss_pred CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC--CCEEEEEEEE
Confidence 3689999999999999863 5799999999976 567999999999999999999999853 4689999999
Q ss_pred cccCccCCCCCccceEEEEEccccccchhh
Q 009797 486 VSSRIGLLHPKVLFQFYFIFYLVHRFKQEC 515 (525)
Q Consensus 486 ~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~ 515 (525)
++. +++|++||++.|+|.++..+...
T Consensus 83 ~d~----~~~d~~lG~~~i~l~~l~~~~~~ 108 (176)
T 3m7f_B 83 ENR----LTRDDFLGQVDVPLYPLPTENPR 108 (176)
T ss_dssp CC--------CEEEEEEEEESCSCCBC---
T ss_pred CCC----CCCCcEEEEEEEEHHHccccCCc
Confidence 976 77899999999999998765443
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.9e-15 Score=132.46 Aligned_cols=90 Identities=21% Similarity=0.330 Sum_probs=79.8
Q ss_pred CcceEEEEEEeeecCC-CC--CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 416 GGGLLVVIVHEAQDVE-GK--HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~-~~--~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
..+.|.|+|++|++|+ .. +.+||||+++++++++||+++++|.||+|||.|.|.+.. .+.|.|+|||++.
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~---~~~L~~~V~D~d~---- 106 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQT---- 106 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCS----
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC---CCEEEEEEEECCC----
Confidence 5788999999999999 32 359999999999988999999999999999999999853 5799999999986
Q ss_pred CCCCccceEEEEEccccccc
Q 009797 493 LHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~~ 512 (525)
+++|++||++.|+|.++..+
T Consensus 107 ~~~dd~lG~~~i~l~~l~~~ 126 (173)
T 2nq3_A 107 LKSDVLLGTAALDIYETLKS 126 (173)
T ss_dssp SSCCEEEEEEEEEHHHHHHH
T ss_pred CCCCceEEEEEEEHHHhccc
Confidence 77899999999999998544
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-15 Score=125.94 Aligned_cols=87 Identities=18% Similarity=0.350 Sum_probs=76.2
Q ss_pred CcceEEEEEEeeecCCCC---CCCCcEEEEEECC--eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc
Q 009797 416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRG--EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI 490 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 490 (525)
....|.|+|++|++|+.. +.+||||++++++ +.++|+++++|.||+|||.|.|.+... +.|.|+|||++.
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~l~~~v~d~d~-- 77 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT---DSITISVWNHKK-- 77 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT---CCEEEEEEEGGG--
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC---CEEEEEEEECCC--
Confidence 456899999999999864 5799999999975 678999999999999999999999864 359999999985
Q ss_pred cCCCC---CccceEEEEEcccc
Q 009797 491 GLLHP---KVLFQFYFIFYLVH 509 (525)
Q Consensus 491 ~~~~~---d~~lG~v~I~l~~~ 509 (525)
+++ |++||++.|++.++
T Consensus 78 --~~~~~~d~~lG~~~i~l~~l 97 (132)
T 3pyc_A 78 --IHKKQGAGFLGCVRLLSNAI 97 (132)
T ss_dssp --TTSSTTTTEEEEEEECHHHH
T ss_pred --CCCCCCCCceEEEEEeHHHh
Confidence 544 89999999999887
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=124.99 Aligned_cols=87 Identities=23% Similarity=0.279 Sum_probs=73.7
Q ss_pred CcceEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeec-CCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009797 416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 494 (525)
+.+.|.|+|++|++++..+.+||||++. ++..+|++++ ++.||+|||.|.|.+... ...|.|+|||++ ++
T Consensus 3 ~~~~L~V~V~~A~~l~~~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d-----~~ 73 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGAQEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKG-----LI 73 (131)
T ss_dssp CCEEEEEEEEEEECSSCGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC--SSEEEEEEEECC-----SS
T ss_pred cceEEEEEEEEeECCCCCCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC--CCeEEEEEEECC-----CC
Confidence 5789999999999997667899999999 3444565554 799999999999999863 458999999996 45
Q ss_pred CCccceEEEEEcccccc
Q 009797 495 PKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 495 ~d~~lG~v~I~l~~~~~ 511 (525)
+|++||++.|+|.++..
T Consensus 74 ~dd~iG~~~i~l~~l~~ 90 (131)
T 2cjt_A 74 WDTMVGTVWIPLRTIRQ 90 (131)
T ss_dssp CEEEEEEEEEEGGGSCB
T ss_pred CCCeEEEEEEEHHHhhh
Confidence 79999999999999853
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.5e-15 Score=158.84 Aligned_cols=108 Identities=23% Similarity=0.397 Sum_probs=97.8
Q ss_pred CceeEEEEEEEeccCCcc---cCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEec
Q 009797 257 RPVGILHVKVVKAMNLKK---KDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 333 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~---~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 333 (525)
.+.|.|+|+|++|++|+. +|..|.+||||++++.+....+++|+++++++||+|||+|.|.+.....+.|+|+|||+
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~ 94 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 94 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence 568999999999999998 88889999999999987554568999999999999999999999876678999999999
Q ss_pred CCCCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 334 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
|.++ |++||++.++|.++..+.....|++|.
T Consensus 95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp CSSS-CEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred CCCC-CceeEEEEEEHHHcCCCCceEEEEecC
Confidence 9988 999999999999998887777888774
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-14 Score=139.82 Aligned_cols=107 Identities=17% Similarity=0.270 Sum_probs=92.7
Q ss_pred ceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC---eEEE
Q 009797 377 KSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---EERK 450 (525)
Q Consensus 377 ~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~---~~~k 450 (525)
...|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++++ +.++
T Consensus 3 ~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~ 57 (284)
T 2r83_A 3 EKLGKLQYSLDYDF-------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFE 57 (284)
T ss_dssp CCCCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEE
T ss_pred cceeEEEEEEEEEC-------------------------CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEe
Confidence 45899999999986 478999999999999873 5799999999964 4679
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
|+++++|.||+|||+|.|.+..... ...|.|+|||++. +++|++||++.++|.++..+
T Consensus 58 T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~----~~~~~~lG~~~i~l~~l~~~ 116 (284)
T 2r83_A 58 TKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFG 116 (284)
T ss_dssp CCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS----SSCCCEEEEEEEEGGGCCCS
T ss_pred CCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCC----CCCCceeEEEEEcchhcccC
Confidence 9999999999999999999875432 3699999999985 77899999999999998654
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.6e-14 Score=139.68 Aligned_cols=101 Identities=25% Similarity=0.382 Sum_probs=87.3
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEE---CCeEE
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF---RGEER 449 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l---~~~~~ 449 (525)
.+..|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++ +.+.+
T Consensus 3 ~~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~ 57 (296)
T 1dqv_A 3 GAPCGRISFALRYLY-------------------------GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKF 57 (296)
T ss_dssp CCSSCEEEEEEECCS-------------------------SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCE
T ss_pred CCeeeEEEEEEEEeC-------------------------CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeE
Confidence 467899999999975 478999999999999874 57999999999 45678
Q ss_pred EeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEE
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIF 505 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~ 505 (525)
+|+++++|.||+|||+|.|.+..... ...|.|+|||.+. +++|++||++.++
T Consensus 58 kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~----~~~~~~iG~~~i~ 110 (296)
T 1dqv_A 58 QTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR----FSRHDLIGQVVLD 110 (296)
T ss_dssp ECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS----SSCCCEEEEEECC
T ss_pred eCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCC----CCCCceEEEEEec
Confidence 99999999999999999999864322 3489999999986 7889999999995
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=147.36 Aligned_cols=123 Identities=25% Similarity=0.438 Sum_probs=100.1
Q ss_pred ceeEEEEEEEeccCCcccCc--CCCCCcEEEEEEcCC--cCCceeeeecCCC-CCCeEeeEEEEEeeCCCCCeEEEEEEe
Q 009797 258 PVGILHVKVVKAMNLKKKDL--LGASDPYVKLKITED--KLPSKKTTVKHKN-LNPEWNEEYNFTVRDPESQAVELAVYD 332 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~kT~v~~~t-~nP~w~e~f~f~v~~~~~~~L~i~v~d 332 (525)
..+.|+|+|++|++|+..+. .|.+||||+|.+.+. ...++||++++++ .||+|||+|.|.+..++...|+|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 57899999999999998874 688999999999653 2234799999987 999999999999987766789999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCC-ceeeEEEEEEEEE
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE-KSRGQLVVEFIYK 389 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~G~l~l~l~~~ 389 (525)
+|..++|++||++.+||..+..+. .+++|... .+. -..|.|.+.+.|.
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~------~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSK------NGDQHPSATLFVKISIQ 623 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECT------TSCEEEEEEEEEEEEEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCC------CcCCCCceEEEEEEEEE
Confidence 999999999999999999998752 35555321 112 2467888888774
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.8e-14 Score=125.44 Aligned_cols=87 Identities=22% Similarity=0.264 Sum_probs=74.0
Q ss_pred CcceEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeec-CCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCC
Q 009797 416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 494 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 494 (525)
..+.|.|+|++|++++..+.+||||++. ++..||++++ ++.||+|||.|.|.+.+. ...|.|+|||++ ++
T Consensus 12 ~~~~L~V~V~~A~~l~~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d-----~~ 82 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDGAQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKG-----LI 82 (167)
T ss_dssp CCCEEEEEEEEEECSSCGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT--TSEEEEEEEECC-----SS
T ss_pred ceEEEEEEEEEEECCCCCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC--CCEEEEEEEECC-----CC
Confidence 4679999999999997667899999999 4455677665 699999999999999863 458999999996 45
Q ss_pred CCccceEEEEEcccccc
Q 009797 495 PKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 495 ~d~~lG~v~I~l~~~~~ 511 (525)
+|++||++.|+|.++..
T Consensus 83 ~dd~iG~~~i~L~~l~~ 99 (167)
T 2cjs_A 83 WDTMVGTVWIPLRTIRQ 99 (167)
T ss_dssp CCEEEEEEEEEGGGSCB
T ss_pred CCceEEEEEEEHHHhcc
Confidence 79999999999999853
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=115.16 Aligned_cols=88 Identities=15% Similarity=0.304 Sum_probs=78.4
Q ss_pred eEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeec-CCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCC
Q 009797 419 LLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPK 496 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d 496 (525)
.|+|.|.+|.+|++ .+|||+++.+.+.++||++++ .+.||+|||.|+|.+..+.. .+.|.|.|+|++. ++++
T Consensus 22 sL~V~l~~a~~Lpg--~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~----v~~n 95 (144)
T 3l9b_A 22 ALIVHLKTVSELRG--RADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK----VFSN 95 (144)
T ss_dssp EEEEEEEEEESCCS--CEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT----TSCC
T ss_pred EEEEEEEEecCCCC--CCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc----ccCC
Confidence 58999999999995 699999999999999999998 69999999999999987533 3599999999987 7899
Q ss_pred ccceEEEEEccccccc
Q 009797 497 VLFQFYFIFYLVHRFK 512 (525)
Q Consensus 497 ~~lG~v~I~l~~~~~~ 512 (525)
.+||.+.|+|.++...
T Consensus 96 rlIG~~~i~Lq~lv~~ 111 (144)
T 3l9b_A 96 KLIGTFRMVLQKVVEE 111 (144)
T ss_dssp EEEEEEEEESHHHHHH
T ss_pred CEEEEEEEEhHHhccC
Confidence 9999999999876433
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=8e-13 Score=138.85 Aligned_cols=89 Identities=26% Similarity=0.294 Sum_probs=78.5
Q ss_pred CcceEEEEEEeeecCCC--CCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 416 GGGLLVVIVHEAQDVEG--KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~--~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
..|.|.|+|++|++|+. .+.+||||+++++++++||+++++++||+|||.|.|.+......+.|.|+|||+|. +
T Consensus 392 ~~~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~----~ 467 (540)
T 3nsj_A 392 GLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY----G 467 (540)
T ss_dssp TEEEEEEEEEEEESCCCSSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS----S
T ss_pred cccEEEEEEEEccCCCcccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC----C
Confidence 47899999999999986 35799999999999999999999999999999999986543345789999999986 6
Q ss_pred CCCccceEEEEEccc
Q 009797 494 HPKVLFQFYFIFYLV 508 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~ 508 (525)
+.|++||.+.++|..
T Consensus 468 ~~dD~LG~~~~~L~~ 482 (540)
T 3nsj_A 468 WDDDLLGSCDRSPHS 482 (540)
T ss_dssp SCCEEEEEEEECCCS
T ss_pred CCCCEEEEEEEEeeC
Confidence 789999999999874
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.39 E-value=8e-13 Score=140.18 Aligned_cols=96 Identities=24% Similarity=0.376 Sum_probs=84.2
Q ss_pred CCcceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCcc
Q 009797 415 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 491 (525)
Q Consensus 415 ~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~ 491 (525)
...|.|.|+|++|++|+.. +.+||||++++++++++|+++++|.||+|||.|.|.+..+ ....|.|+|||++.
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~-~~~~l~~~v~d~d~--- 459 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL-YQDVLCLTLFDRDQ--- 459 (510)
T ss_dssp --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCT-TTCEEEEEEEECCS---
T ss_pred CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC---
Confidence 3678999999999999863 5799999999999999999999999999999999999765 44689999999986
Q ss_pred CCCCCccceEEEEEccccccchhh
Q 009797 492 LLHPKVLFQFYFIFYLVHRFKQEC 515 (525)
Q Consensus 492 ~~~~d~~lG~v~I~l~~~~~~~~~ 515 (525)
+++|++||++.+++.++..+...
T Consensus 460 -~~~~d~lG~~~~~l~~l~~~~~~ 482 (510)
T 3jzy_A 460 -FSPDDFLGRTEIPVAKIRTEQES 482 (510)
T ss_dssp -SSSCCEEEEEEEEHHHHHHHHHH
T ss_pred -CCCCCceEEEEEEHHHhccccCC
Confidence 78899999999999998766543
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-14 Score=148.55 Aligned_cols=128 Identities=18% Similarity=0.268 Sum_probs=22.2
Q ss_pred CceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCC---CCCeEeeEEEEEeeCCCCCeEEEEEEec
Q 009797 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKN---LNPEWNEEYNFTVRDPESQAVELAVYDW 333 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t---~nP~w~e~f~f~v~~~~~~~L~i~v~d~ 333 (525)
...|.|+|+|++|++|+++| ||||++++++... .||+++++| +||+|||+|.|.+... ...|.++|||+
T Consensus 8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~--~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~ 79 (483)
T 3bxj_A 8 RVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLY--ARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRD 79 (483)
T ss_dssp EEEECC----------------------------------------------------CCEECC----------------
T ss_pred eeccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEE--eeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEec
Confidence 34789999999999999876 9999999987543 589999999 9999999999987543 57899999994
Q ss_pred -C---CCCCCCccEEEEEECcccCCCCCeeEEEecccccccC-----------------CCCCCceeeEEEEEEEEEecC
Q 009797 334 -E---QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN-----------------DGQNEKSRGQLVVEFIYKPFK 392 (525)
Q Consensus 334 -~---~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~G~l~l~l~~~p~~ 392 (525)
+ ..++|++||++.+++.++..+.....|++|....... ..++....|.|++++.|.+..
T Consensus 80 ~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~ 159 (483)
T 3bxj_A 80 SDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS 159 (483)
T ss_dssp ---------------------------CCEECC--------------------------------------CEEEEEECC
T ss_pred CCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeee
Confidence 4 3678999999999999999877777788774322100 001123569999999998753
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.29 E-value=9.4e-12 Score=133.65 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=84.2
Q ss_pred CCcceEEEEEEeeecCCCC-----CCCCcEEEEEECC-----eEEEeeeecCC-CCCcccceEEEEecCCCCCCeEEEEE
Q 009797 415 AGGGLLVVIVHEAQDVEGK-----HHTNPYARILFRG-----EERKTKHVKKN-RDPRWEEEFQFMLEEPPTNDRLHVEV 483 (525)
Q Consensus 415 ~~~g~L~V~v~~a~~L~~~-----~~~dPyv~v~l~~-----~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~l~i~V 483 (525)
...+.|.|+|++|++|+.. +.+||||+|.+.+ .++||++++++ .||+|||+|+|.+..+. ...|.|+|
T Consensus 494 ~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~e-l~~L~~~V 572 (624)
T 1djx_A 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD-LALVRFMV 572 (624)
T ss_dssp CCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGG-GCEEEEEE
T ss_pred ccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCC-CCEEEEEE
Confidence 3678999999999999863 4689999999965 46799999997 99999999999998753 35899999
Q ss_pred EEcccCccCCCCCccceEEEEEccccccchhhhc
Q 009797 484 CSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCR 517 (525)
Q Consensus 484 ~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~ 517 (525)
||++. +++|++||++.|+|.++..|.+.+.
T Consensus 573 ~D~D~----~~~dd~iG~~~ipl~~L~~G~r~v~ 602 (624)
T 1djx_A 573 EDYDS----SSKNDFIGQSTIPWNSLKQGYRHVH 602 (624)
T ss_dssp EECCS----SSCCEEEEEEEEEGGGBCCEEEEEE
T ss_pred EEcCC----CCCCceeEEEEEEHHHcCCCcEEEe
Confidence 99986 6789999999999999988765443
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.26 E-value=6e-12 Score=136.28 Aligned_cols=92 Identities=16% Similarity=0.351 Sum_probs=81.5
Q ss_pred CcceEEEEEEeeecCCC---C---CCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009797 416 GGGLLVVIVHEAQDVEG---K---HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~---~---~~~dPyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
..+.|.|+|++|++|+. . +.+||||++++++ .++||+++++|.||+|||+|+|.+..+ ....|.|+|||+
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~-~~~~L~~~V~D~ 94 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDA 94 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCBCEEEEEEC
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCC-CCCEEEEEEEEC
Confidence 57899999999999987 3 5799999999984 578999999999999999999999875 456899999999
Q ss_pred ccCccCCCCCccceEEEEEccccccch
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
+. ++ |++||++.|+|.++..+.
T Consensus 95 D~----~~-ddfIG~v~I~L~~L~~g~ 116 (749)
T 1cjy_A 95 NY----VM-DETLGTATFTVSSMKVGE 116 (749)
T ss_dssp CS----SS-CEEEEEECCBSTTSCTTC
T ss_pred CC----CC-CceeEEEEEEHHHcCCCC
Confidence 86 67 999999999999986543
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-11 Score=134.05 Aligned_cols=108 Identities=33% Similarity=0.552 Sum_probs=91.9
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCCC-CCeEEEEEEecC
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 334 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~ 334 (525)
..+.|.|++.+|++|+++|..|.+||||++++.+. ...+.+|+++++++||.|||+|.|.+.... ...|.++|||++
T Consensus 170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d 249 (674)
T 3pfq_A 170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 249 (674)
T ss_dssp CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence 35789999999999999999999999999999543 234579999999999999999999987543 456999999999
Q ss_pred CCCCCCccEEEEEECcccCCCCCeeEEEeccc
Q 009797 335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 366 (525)
Q Consensus 335 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 366 (525)
..++|++||++.+++.++.... ...|+.+..
T Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls 280 (674)
T 3pfq_A 250 LTSRNDFMGSLSFGISELQKAG-VDGWFKLLS 280 (674)
T ss_dssp SSSCCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred cccccccccccccchhhhccCC-cccceeecc
Confidence 9999999999999999998654 466776643
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.15 E-value=6.9e-11 Score=129.27 Aligned_cols=91 Identities=23% Similarity=0.396 Sum_probs=79.4
Q ss_pred cceEEEEEEeeecCCCC---CCCCcEEEEEE-----CCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009797 417 GGLLVVIVHEAQDVEGK---HHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 488 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~---~~~dPyv~v~l-----~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~ 488 (525)
.+.|.|+|.+|++|+.. +.+||||++++ ...+++|+++++|.||+|||.|.|.+........|.|+|||++.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence 56899999999999863 67999999999 33567999999999999999999999876555689999999986
Q ss_pred CccCCCCCccceEEEEEcccccc
Q 009797 489 RIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 489 ~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
+++|++||.+.+++.++..
T Consensus 251 ----~~~dd~iG~~~i~l~~l~~ 269 (674)
T 3pfq_A 251 ----TSRNDFMGSLSFGISELQK 269 (674)
T ss_dssp ----SSCCEECCBCCCBTTHHHH
T ss_pred ----ccccccccccccchhhhcc
Confidence 7899999999999998743
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-10 Score=125.84 Aligned_cols=119 Identities=17% Similarity=0.278 Sum_probs=90.6
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc---CCceeeeecCC-CCCCeEee-EEEEE-eeCCCCCeEEEEEEe
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHK-NLNPEWNE-EYNFT-VRDPESQAVELAVYD 332 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~v~~~-t~nP~w~e-~f~f~-v~~~~~~~L~i~v~d 332 (525)
...|+|+|++|++|+.. .+||||+|.+.+.. ..+++|+++++ +.||+||| +|.|. +..++...|+|+|||
T Consensus 724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D 799 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE 799 (885)
T ss_dssp CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence 45899999999999853 68999999997622 22368998875 59999999 69998 766666789999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecCC
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE 393 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 393 (525)
++ +++||++.+||..|..+.. .++|... . ...-..|.|.+.+.+.....
T Consensus 800 ~d----ddfiG~~~lpL~~L~~GyR---~vpL~~~---~--g~~l~~atLfv~i~~~~~~~ 848 (885)
T 3ohm_B 800 EG----GKFVGHRILPVSAIRSGYH---YVCLRNE---A--NQPLCLPALLIYTEASDYIP 848 (885)
T ss_dssp TT----TEEEEEEEEETTTCCCEEE---EEEEECT---T--SCEEEEEEEEEEEEEEECCC
T ss_pred CC----ccEEeeEEEEHHHcCCCce---EEEecCC---C--CCccCceEEEEEEEEEecCC
Confidence 86 7899999999999987632 3444221 0 11235789999998886543
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.10 E-value=3.7e-10 Score=124.24 Aligned_cols=115 Identities=20% Similarity=0.321 Sum_probs=87.1
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC---cCCceeee-ecC-CCCCCeEee-EEEE-EeeCCCCCeEEEEE
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED---KLPSKKTT-VKH-KNLNPEWNE-EYNF-TVRDPESQAVELAV 330 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~---~~~~~kT~-v~~-~t~nP~w~e-~f~f-~v~~~~~~~L~i~v 330 (525)
..|.|+|+|++|++|+. +.+||||+|.+.+. ...++||+ +++ ++.||+||| +|.| .+..++...|+|+|
T Consensus 676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V 751 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 751 (799)
T ss_dssp TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence 46899999999999984 46899999999642 22346898 776 569999999 7999 88766667899999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCC-ceeeEEEEEEEEE
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE-KSRGQLVVEFIYK 389 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~G~l~l~l~~~ 389 (525)
||++ +++||++.+||..|..+. .+++|... .+. -..+.|.+.+.+.
T Consensus 752 ~D~d----~d~iG~~~ipl~~L~~G~---r~v~L~~~------~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 752 MEEG----NKFLGHRIIPINALNSGY---HHLCLHSE------SNMPLTMPALFIFLEMK 798 (799)
T ss_dssp EETT----TEEEEEEEEEGGGBCCEE---EEEEEECT------TCCEEEEEEEEEEEEEE
T ss_pred EEeC----CCccceEeeehhhcCCCc---EEEeccCC------CCCCCCceEEEEEEEEE
Confidence 9986 789999999999998652 34444321 111 2457777777653
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-10 Score=122.96 Aligned_cols=118 Identities=19% Similarity=0.359 Sum_probs=89.5
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcC----CceeeeecCC-CCCCeEeeE-EEEE-eeCCCCCeEEEEEE
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL----PSKKTTVKHK-NLNPEWNEE-YNFT-VRDPESQAVELAVY 331 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~----~~~kT~v~~~-t~nP~w~e~-f~f~-v~~~~~~~L~i~v~ 331 (525)
.+.|+|+|++|++|+.+ .+||||+|.+.+... .+++|+++++ +.||+|||+ |.|. +..++...|+|+||
T Consensus 649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~ 724 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS 724 (816)
T ss_dssp CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence 47899999999999853 689999999976321 3468998875 699999998 9998 77666678999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEecC
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK 392 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 392 (525)
|++ +++||++.+||+.|..+. ..++|... . ...-..+.|.+.+.+....
T Consensus 725 D~d----ddfiG~~~ipL~~L~~Gy---R~vpL~~~---~--g~~~~~atLfv~i~~~~~~ 773 (816)
T 3qr0_A 725 EEN----GKFIGHRVMPLDGIKPGY---RHVPLRNE---S--NRPLGLASVFAHIVAKDYV 773 (816)
T ss_dssp ETT----SCEEEEEEEESTTCCCEE---EEEEEECT---T--SCEEEEEEEEEEEEEEECC
T ss_pred ecC----CCeeeEEEEEHHHcCCcc---eEEEEeCC---C--CCCCCceEEEEEEEEEecC
Confidence 984 789999999999998763 23444221 0 1123457888888776543
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.07 E-value=9.9e-12 Score=130.07 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=12.5
Q ss_pred CcceEEEEEEeeecCCCCCCCCcEEEEEECCe-EEEeeeecCC---CCCcccceEEEEecCCCCCCeEEEEEEEc-ccCc
Q 009797 416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRGE-ERKTKHVKKN---RDPRWEEEFQFMLEEPPTNDRLHVEVCSV-SSRI 490 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~~-~~kT~v~~~t---~nP~wne~f~f~v~~~~~~~~l~i~V~d~-~~~~ 490 (525)
..+.|.|+|++|++|++++ ||||+++++++ ..||+++++| .||+|||.|+|.+... ...|.|+|||. +. .
T Consensus 9 ~~~~L~V~VieAk~L~~~d--dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~--~~~L~v~V~d~~d~-~ 83 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPKK--RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA--VRALRLHLYRDSDK-K 83 (483)
T ss_dssp EEECC-----------------------------------------------CCEECC----------------------
T ss_pred eccEEEEEEEEcCCcCCCC--CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC--ccEEEEEEEecCCc-c
Confidence 4678999999999999865 99999999886 4599999999 9999999999997543 36899999995 31 0
Q ss_pred cCCCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 491 GLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 491 ~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
+..++|++||++.|++.++..+. ...+||
T Consensus 84 ~~~~~d~~lG~v~i~l~~l~~~~----~~~~W~ 112 (483)
T 3bxj_A 84 RKKDKAGYVGLVTVPVATLAGRH----FTEQWY 112 (483)
T ss_dssp ---------------------------CCEECC
T ss_pred ccCCCCceEEEEEEEHHHhcCCC----CCCeEE
Confidence 11567999999999999986442 344565
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-09 Score=120.10 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=78.8
Q ss_pred CcceEEEEEEeeecCCCCCCCCcEEEEEECC-------eEEEeeeecC-CCCCcccce-EEEE-ecCCCCCCeEEEEEEE
Q 009797 416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRG-------EERKTKHVKK-NRDPRWEEE-FQFM-LEEPPTNDRLHVEVCS 485 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~-------~~~kT~v~~~-t~nP~wne~-f~f~-v~~~~~~~~l~i~V~d 485 (525)
..+.|.|+|++|++|+. ..+||||+|.+.+ +++||+++++ +.||+|||. |+|. +..+.. ..|.|+|+|
T Consensus 648 ~~~~L~V~Visaq~L~~-~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel-a~Lrf~V~D 725 (816)
T 3qr0_A 648 VAGTIEIKIISAQFLSD-KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL-AVVRIIVSE 725 (816)
T ss_dssp CCEEEEEEEEEEECCCS-SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG-CEEEEEEEE
T ss_pred cceEEEEEEEEcccCCC-CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc-cEEEEEEEe
Confidence 35789999999999987 4799999999976 4669999986 599999997 9998 766533 589999999
Q ss_pred cccCccCCCCCccceEEEEEccccccchhhhcc
Q 009797 486 VSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRM 518 (525)
Q Consensus 486 ~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~ 518 (525)
++ +++||++.|+|.++..|.++..-
T Consensus 726 ~d--------ddfiG~~~ipL~~L~~GyR~vpL 750 (816)
T 3qr0_A 726 EN--------GKFIGHRVMPLDGIKPGYRHVPL 750 (816)
T ss_dssp TT--------SCEEEEEEEESTTCCCEEEEEEE
T ss_pred cC--------CCeeeEEEEEHHHcCCcceEEEE
Confidence 83 78999999999999988776543
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-09 Score=86.26 Aligned_cols=113 Identities=15% Similarity=0.247 Sum_probs=85.6
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcC-Cceee-eecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL-PSKKT-TVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 336 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~-~~~kT-~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 336 (525)
.+.|+|.+.++.--+-+......||||.+.+..... ...+| ..+++|..|.|||+|.-.+.+ ...|.+.|++...
T Consensus 5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~- 81 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE- 81 (126)
T ss_dssp CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT-
T ss_pred CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC-
Confidence 467888886655322222224689999999975432 12465 778899999999999999975 5789999997653
Q ss_pred CCCCccEEEEEECcccC-----CCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 337 GKHDKMGMNVVPLKELT-----PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 337 ~~d~~lG~~~i~L~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
++++.|++++++|. .+...+.|++| ++.|+|++.+.|+
T Consensus 82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdL------------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDL------------QPQAKVLMSVQYF 124 (126)
T ss_dssp ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------BSSCEEEEEEEEE
T ss_pred ---CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEe
Confidence 89999999999998 34456788876 5689999999987
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=120.45 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=77.0
Q ss_pred cceEEEEEEeeecCCCCCCCCcEEEEEECC------eEEEeeeecC-CCCCcccc-eEEEE-ecCCCCCCeEEEEEEEcc
Q 009797 417 GGLLVVIVHEAQDVEGKHHTNPYARILFRG------EERKTKHVKK-NRDPRWEE-EFQFM-LEEPPTNDRLHVEVCSVS 487 (525)
Q Consensus 417 ~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~------~~~kT~v~~~-t~nP~wne-~f~f~-v~~~~~~~~l~i~V~d~~ 487 (525)
...|.|+|++|++|+. ..+||||+|.+.| .++||+++++ +.||+||| +|+|. |..+. ...|.|+|||++
T Consensus 724 ~~~L~V~Visaq~L~~-~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pe-la~Lrf~V~D~d 801 (885)
T 3ohm_B 724 ANALRVKVISGQFLSD-RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPT-LASLRIAAFEEG 801 (885)
T ss_dssp CEEEEEEEEEEESCCS-SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGG-GCEEEEEEEETT
T ss_pred ceEEEEEEEEeccCcc-cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCC-cCEEEEEEEcCC
Confidence 3479999999999987 4799999999976 2469999986 59999999 69998 76553 358999999984
Q ss_pred cCccCCCCCccceEEEEEccccccchhhhcc
Q 009797 488 SRIGLLHPKVLFQFYFIFYLVHRFKQECCRM 518 (525)
Q Consensus 488 ~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~ 518 (525)
+++||++.|+|.++..|.++..-
T Consensus 802 --------ddfiG~~~lpL~~L~~GyR~vpL 824 (885)
T 3ohm_B 802 --------GKFVGHRILPVSAIRSGYHYVCL 824 (885)
T ss_dssp --------TEEEEEEEEETTTCCCEEEEEEE
T ss_pred --------ccEEeeEEEEHHHcCCCceEEEe
Confidence 78999999999999988776543
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.2e-09 Score=86.40 Aligned_cols=115 Identities=16% Similarity=0.227 Sum_probs=88.2
Q ss_pred ceeEEEEEEEeccCCcccC-cCCCCCcEEEEEEcCCcC-Cceee-eecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecC
Q 009797 258 PVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKL-PSKKT-TVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE 334 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~-~~~kT-~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~ 334 (525)
..+.|+|.+.++.--+.+. .....||||.|.+..... ...+| ..+++|..|+|||+|.-.+.+ ...|.+.|++..
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a 85 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKN 85 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSS
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCC
Confidence 4567888887766443322 123579999999975432 23577 777889999999999999875 578999999654
Q ss_pred CCCCCCccEEEEEECcccC-----CCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 335 QVGKHDKMGMNVVPLKELT-----PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 335 ~~~~d~~lG~~~i~L~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
. +++..|++++.+|. .+...+.|++| ++.|+|++.+.|+-
T Consensus 86 ~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdL------------eP~Gkl~v~i~~~~ 130 (138)
T 2enj_A 86 V----DLISETTVELYSLAERCRKNNGKTEIWLEL------------KPQGRMLMNARYFL 130 (138)
T ss_dssp C----SCCEEEEEESHHHHHHHHHTTTCEEEEEEC------------BSSCEEEEEEEECC
T ss_pred C----CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEEE
Confidence 3 89999999999998 44466889886 56899999999963
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-09 Score=117.78 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=77.0
Q ss_pred CcceEEEEEEeeecCCCCCCCCcEEEEEECC------eEEEee-eecC-CCCCcccc-eEEE-EecCCCCCCeEEEEEEE
Q 009797 416 GGGLLVVIVHEAQDVEGKHHTNPYARILFRG------EERKTK-HVKK-NRDPRWEE-EFQF-MLEEPPTNDRLHVEVCS 485 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~------~~~kT~-v~~~-t~nP~wne-~f~f-~v~~~~~~~~l~i~V~d 485 (525)
..+.|.|+|++|++|+. +.+||||+|.+.| +++||+ ++++ +.||+||| +|+| .+..+.. ..|.|+|+|
T Consensus 676 ~~~~L~V~Visa~~L~~-~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el-~~Lr~~V~D 753 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE-RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL-ASLRVAVME 753 (799)
T ss_dssp TCEEEEEEEEEEESCCS-SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG-CEEEEEEEE
T ss_pred eeeeEEEEEEeccccCc-cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCc-cEEEEEEEE
Confidence 46789999999999996 5799999999954 256999 8865 69999999 7999 8876533 489999999
Q ss_pred cccCccCCCCCccceEEEEEccccccchhhhc
Q 009797 486 VSSRIGLLHPKVLFQFYFIFYLVHRFKQECCR 517 (525)
Q Consensus 486 ~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~ 517 (525)
++ +++||++.|+|.++..|.++..
T Consensus 754 ~d--------~d~iG~~~ipl~~L~~G~r~v~ 777 (799)
T 2zkm_X 754 EG--------NKFLGHRIIPINALNSGYHHLC 777 (799)
T ss_dssp TT--------TEEEEEEEEEGGGBCCEEEEEE
T ss_pred eC--------CCccceEeeehhhcCCCcEEEe
Confidence 84 7899999999999988876544
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=65.17 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=65.8
Q ss_pred CcceEEEEEEeeec--CCC-CCCCCcEEEEEECCeE----EEe-eeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009797 416 GGGLLVVIVHEAQD--VEG-KHHTNPYARILFRGEE----RKT-KHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS 487 (525)
Q Consensus 416 ~~g~L~V~v~~a~~--L~~-~~~~dPyv~v~l~~~~----~kT-~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~ 487 (525)
....|++.+.++.- |+. ....||||.+.+.... -+| .++++|..|+|||.|.-.+.+. ..|.|.|+...
T Consensus 4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G---r~l~i~Vfh~a 80 (126)
T 1yrk_A 4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG---RVIQIVLMRAA 80 (126)
T ss_dssp CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT---CEEEEEEEEET
T ss_pred cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC---EEEEEEEEcCC
Confidence 45678888877653 332 2368999999986543 155 7788999999999999999874 68999999652
Q ss_pred cCccCCCCCccceEEEEEccccc
Q 009797 488 SRIGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 488 ~~~~~~~~d~~lG~v~I~l~~~~ 510 (525)
-+++..+.|.+.++.
T Consensus 81 --------~~fvAn~tV~~edL~ 95 (126)
T 1yrk_A 81 --------EEPVSEVTVGVSVLA 95 (126)
T ss_dssp --------TEEEEEEEEEHHHHH
T ss_pred --------CCeeeEEEEEHHHHH
Confidence 399999999999985
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-05 Score=66.48 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=67.3
Q ss_pred CcceEEEEEEeeecCC--C--CCCCCcEEEEEECCeE----EEe-eeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009797 416 GGGLLVVIVHEAQDVE--G--KHHTNPYARILFRGEE----RKT-KHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~--~--~~~~dPyv~v~l~~~~----~kT-~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
..+.|+|.+.++.--+ . ....||||.|.+.... -+| .++++|..|+|||.|.-.+.+. ..|.|.|+..
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G---r~l~i~Vfh~ 84 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG---RVMQIIVKGK 84 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS---CEEEEEEECS
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC---eEEEEEEEcC
Confidence 5677899887776433 2 3468999999986542 377 7788899999999999999874 6899999954
Q ss_pred ccCccCCCCCccceEEEEEcccccc
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
. -+++..+.|.+.++..
T Consensus 85 a--------~~fVAn~tV~~edL~~ 101 (138)
T 2enj_A 85 N--------VDLISETTVELYSLAE 101 (138)
T ss_dssp S--------CSCCEEEEEESHHHHH
T ss_pred C--------CCeeeEEEEEHHHHHh
Confidence 2 3999999999999853
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.11 E-value=1.9 Score=38.91 Aligned_cols=57 Identities=11% Similarity=0.177 Sum_probs=41.4
Q ss_pred CceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEecCCC----CCCCccEEEEEECcc
Q 009797 295 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQV----GKHDKMGMNVVPLKE 351 (525)
Q Consensus 295 ~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d~~~~----~~d~~lG~~~i~L~~ 351 (525)
...+|.|...+.+|.|+|++.+.+... ....|.|++++...- ..+..+|.+-+||-.
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~ 139 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR 139 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence 346888888999999999999998743 356799999876432 122367777777643
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=90.31 E-value=4.2 Score=34.61 Aligned_cols=129 Identities=14% Similarity=0.152 Sum_probs=83.8
Q ss_pred CCCceeEEEEEEEeccCCcccC-cCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC-------CCCeE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP-------ESQAV 326 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-------~~~~L 326 (525)
.....+.+.|+|.++.=-+..- ..+..+|+.-++++=-......|.+.. +.+|.+|-+-.+.|... ....+
T Consensus 13 l~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l 91 (156)
T 2yrb_A 13 LERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTI 91 (156)
T ss_dssp CCSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCE
T ss_pred ccCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCE
Confidence 3455789999999887322111 124457877666654444445666655 78999999888888532 14578
Q ss_pred EEEEEecCCCCCCCccEEEEEECcccCCCCCe-eEEEecccccccCCCCCC-ceeeEEEEEEEEEec
Q 009797 327 ELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS-VKTLDLLKNMDLNDGQNE-KSRGQLVVEFIYKPF 391 (525)
Q Consensus 327 ~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~-~~~~~l~~~~~~~~~~~~-~~~G~l~l~l~~~p~ 391 (525)
.++++... ...-+.+|.+.|+|.++.....+ .....+.. . .++ ..-|.|.+.+++...
T Consensus 92 ~lELhqa~-g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g-~-----~g~~~~~G~LeywiRL~~P 151 (156)
T 2yrb_A 92 TLEVHQAY-STEYETIAACQLKFHEILEKSGRIFCTASLIG-T-----KGDIPNFGTVEYWFRLRVS 151 (156)
T ss_dssp EEEEEEEC-SSCEEEEEEEEECCSHHHHCCSCEEEEEEECB-S-----SSCCTTSEEEEEEEEEEEC
T ss_pred EEEEEEee-CCCceEEEEEEEEhHHhhCcCCceEEEEEEEc-C-----CCCcceEEEEEEEEEEecc
Confidence 99998874 34556899999999999866542 23333321 1 111 468999998887643
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=90.26 E-value=0.89 Score=50.59 Aligned_cols=95 Identities=12% Similarity=0.196 Sum_probs=65.1
Q ss_pred CcceEEEEEEeeecCCCCCCCCcEEEEEE--CCe----EEEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcc
Q 009797 416 GGGLLVVIVHEAQDVEGKHHTNPYARILF--RGE----ERKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVS 487 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~l--~~~----~~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~ 487 (525)
....+.|+|.++.+++....++-||++.+ |++ ...|+.+....+|.|||-++|.+. +.|.+..|.|+||+..
T Consensus 215 ~~~~f~i~i~~~~~~~~~~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~ 294 (940)
T 2wxf_A 215 LEQPFSIELIEGRKVNADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVV 294 (940)
T ss_dssp CCSEEEEEEEEEECCCC---CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC
T ss_pred cCCceEEEEEEecccCCCCCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEec
Confidence 45679999999999987656777888665 443 246666666788999998887754 5567789999999963
Q ss_pred cC--------ccCCCCCccceEEEEEccccc
Q 009797 488 SR--------IGLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 488 ~~--------~~~~~~d~~lG~v~I~l~~~~ 510 (525)
.. .+--..+..||.+.++|-+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~ 325 (940)
T 2wxf_A 295 EKAKKARSTKKKSKKADCPIAWANLMLFDYK 325 (940)
T ss_dssp ----------------CEEEEEEEEESBCTT
T ss_pred CCccCccccccccccccceEEEEeeeEECCc
Confidence 20 000012459999999998753
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=89.12 E-value=2.3 Score=47.80 Aligned_cols=93 Identities=22% Similarity=0.293 Sum_probs=61.0
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcCC-ceeeeecCCCCCCeEeeEEEEEee--C-CCCCeEEEEEEe
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYD 332 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~d 332 (525)
...++|+|.++.++.... ....+-||.+.+ |+.... ..+|+.+ ...+|.|||...|.+. + |....|.++||+
T Consensus 354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~ 431 (1091)
T 3hhm_A 354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRV-PCSNPRWNEWLNYDIYIPDLPRAARLCLSICS 431 (1091)
T ss_dssp CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCC-CTTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceecccc-CCCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence 457899999999886432 234677888877 333321 1234333 3567889999888875 2 347789999998
Q ss_pred cCCC----CCCCccEEEEEECcccC
Q 009797 333 WEQV----GKHDKMGMNVVPLKELT 353 (525)
Q Consensus 333 ~~~~----~~d~~lG~~~i~L~~l~ 353 (525)
.... ..+..||.+.++|-+-.
T Consensus 432 ~~~~~~~~~~~~~lg~~n~~lfd~~ 456 (1091)
T 3hhm_A 432 VKGRKGAKEEHCPLAWGNINLFDYT 456 (1091)
T ss_dssp CCCCC-------CCEEEEEESBCTT
T ss_pred ecCccCcccccceeEEeeeeeEccC
Confidence 6542 12457888888887654
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=88.67 E-value=1.7 Score=48.34 Aligned_cols=93 Identities=11% Similarity=0.204 Sum_probs=60.3
Q ss_pred ceeEEEEEEEeccCCcccCcCCCCCcEEEEEE--cCCcC-CceeeeecCCCCCCeEeeEEEEEee--C-CCCCeEEEEEE
Q 009797 258 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKL-PSKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVY 331 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~-~~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~v~ 331 (525)
-...+.|+|.++.++... ..++-||.+.+ |+... ....|+.+....+|.|||.+.|.+. + |....|.++||
T Consensus 215 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~ 291 (940)
T 2wxf_A 215 LEQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY 291 (940)
T ss_dssp CCSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred cCCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence 356899999999998754 34677887765 43332 1234444445678999999988875 2 34778999999
Q ss_pred ecCCC--C----------CCCccEEEEEECcccC
Q 009797 332 DWEQV--G----------KHDKMGMNVVPLKELT 353 (525)
Q Consensus 332 d~~~~--~----------~d~~lG~~~i~L~~l~ 353 (525)
+.... + .+..+|.+.++|-+-.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~ 325 (940)
T 2wxf_A 292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDYK 325 (940)
T ss_dssp EEC----------------CEEEEEEEEESBCTT
T ss_pred EecCCccCccccccccccccceEEEEeeeEECCc
Confidence 96421 1 2347787777776543
|
| >2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=80.92 E-value=2.6 Score=47.61 Aligned_cols=95 Identities=12% Similarity=0.162 Sum_probs=64.2
Q ss_pred CcceEEEEEEeeecCCCCCCCCcEEEEE--ECCeE----EEeeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcc
Q 009797 416 GGGLLVVIVHEAQDVEGKHHTNPYARIL--FRGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVS 487 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~--l~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~ 487 (525)
....+.|+|.++.++.....++-||++. -|++. .+|+.+....+|.|||-++|.+. +.|.+..|.|+||+..
T Consensus 351 ~~~~f~i~i~~~~~~~~~~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~~ 430 (1092)
T 2y3a_A 351 NNNPFQITLVKGNKLNTEETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAVL 430 (1092)
T ss_dssp CCSEEEEEECCCCCCCCCSSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC-
T ss_pred cCCCEEEEEEEeccCCCCCCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEec
Confidence 4568999999999998766677787744 45543 35666666788999998887764 5567779999999863
Q ss_pred cC-ccC-----------------CCCCccceEEEEEccccc
Q 009797 488 SR-IGL-----------------LHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 488 ~~-~~~-----------------~~~d~~lG~v~I~l~~~~ 510 (525)
.. .+. -.....||.+.++|-+..
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~ 471 (1092)
T 2y3a_A 431 DKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDFK 471 (1092)
T ss_dssp -----------------------------CCEEEEESBCTT
T ss_pred CccccccccccccccccccccccccccceeEEEeeeeECCc
Confidence 10 000 012349999999998854
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=80.66 E-value=4 Score=45.87 Aligned_cols=95 Identities=23% Similarity=0.303 Sum_probs=63.3
Q ss_pred CcceEEEEEEeeecCCCC--CCCCcEEEEEE--CCe----EEEeeeecCCCCCcccceEEEEe--cCCCCCCeEEEEEEE
Q 009797 416 GGGLLVVIVHEAQDVEGK--HHTNPYARILF--RGE----ERKTKHVKKNRDPRWEEEFQFML--EEPPTNDRLHVEVCS 485 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~--~~~dPyv~v~l--~~~----~~kT~v~~~t~nP~wne~f~f~v--~~~~~~~~l~i~V~d 485 (525)
....+.|+|.++.++... ...+-||++.+ |++ ..+|+.+. ..+|.|||-++|.+ .+.|.+..|.|+||+
T Consensus 353 ~~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~ 431 (1091)
T 3hhm_A 353 INSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICS 431 (1091)
T ss_dssp CCSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred CCCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence 456789999999887642 35677888876 333 23454444 46788999888776 455677899999998
Q ss_pred cccCccCCCCCccceEEEEEcccccc
Q 009797 486 VSSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 486 ~~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
.....+--.....||.+++.|-+...
T Consensus 432 ~~~~~~~~~~~~~lg~~n~~lfd~~~ 457 (1091)
T 3hhm_A 432 VKGRKGAKEEHCPLAWGNINLFDYTD 457 (1091)
T ss_dssp CCCCC-------CCEEEEEESBCTTC
T ss_pred ecCccCcccccceeEEeeeeeEccCC
Confidence 75311100134689999999988643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 525 | ||||
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 3e-27 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 0.003 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 5e-23 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 2e-19 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 5e-07 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 3e-19 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 2e-18 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 3e-04 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 4e-18 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-04 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 7e-18 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 7e-18 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 8e-18 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 0.001 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 9e-18 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 5e-17 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 2e-16 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 2e-16 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 1e-04 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 6e-16 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 1e-15 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 8e-14 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 5e-04 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 2e-13 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 3e-12 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-07 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 2e-11 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 2e-10 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 104 bits (261), Expect = 3e-27
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 10/144 (6%)
Query: 252 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 311
S P G L V +V A L+ D L DPYV+L K + PEWN
Sbjct: 2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ--KSNVAEGMGTTPEWN 59
Query: 312 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 371
E + FTV + ++ ++D + + D +G +PL+ + E + N
Sbjct: 60 ETFIFTVSEGTTELK-AKIFDKDVGTEDDAVGEATIPLEPVFVEGS-------IPPTAYN 111
Query: 372 DGQNEKSRGQLVVEFIYKPFKEED 395
++E+ +G++ V +KP
Sbjct: 112 VVKDEEYKGEIWVALSFKPSGPSS 135
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 35.9 bits (82), Expect = 0.003
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 418 GLLVVIVHEAQDVEGKH---HTNPYARILFRGEERKTKHV-KKNRDPRWEEEFQFMLEEP 473
G L V++ A+ +E + +PY ++ R +++K+ P W E F F + E
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 474 PTNDRLHV 481
T + +
Sbjct: 70 TTELKAKI 77
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 92.9 bits (230), Expect = 5e-23
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 314
Y L V +++A L D+ G SDPYVK+ + DK +T V K LNP +NE++
Sbjct: 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 88
Query: 315 NFTV--RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365
F V + + + +AVYD+++ KHD +G VP+ + + + DL
Sbjct: 89 TFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 82.4 bits (203), Expect = 2e-19
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL--PSKKTTVKHKNLNPEWNEEYNFT 317
+L V V A NL D G SDPYVKLK+ D +KT +LNPEWNE + F
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 318 VRDPE-SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
+++ + + + + ++DW+ ++D MG + EL
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 114
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.0 bits (111), Expect = 5e-07
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 418 GLLVVIVHEAQDV---EGKHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFM 469
+L+V+V +A+++ + ++PY ++ ++KTK +K + +P W E F+F
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 470 LEEPPTNDRLHVEVC 484
L+E + RL VE+
Sbjct: 75 LKESDKDRRLSVEIW 89
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.3 bits (200), Expect = 3e-19
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 262 LHVKVVKAMNLKK---KDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 318
V V++A + K D+L DPYV+L I+ K+T + ++NP WNE + F +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 319 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 366
+ +E+ + D + +G + + E +
Sbjct: 65 DPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQ 111
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 79.4 bits (195), Expect = 2e-18
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
Y+ L V V+KA +L K D+ G SDPYVK+ + ++ KKT VK N +NE
Sbjct: 10 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNE 69
Query: 313 EYNFTVRDPESQA--VELAVYDWEQVGKHDKMGMNVVPLKELTPEE 356
+ F + + VE V D E+ +++ +G V+
Sbjct: 70 LFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGG 115
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.9 bits (90), Expect = 3e-04
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 469
L V+V +A+ + ++PY ++ R ++KT K + + E F F
Sbjct: 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74
Query: 470 L-EEPPTNDRLHVEVC 484
+ E + V
Sbjct: 75 IPCESLEEISVEFLVL 90
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.2 bits (192), Expect = 4e-18
Identities = 20/109 (18%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK--KTTVKHKNLNPEWNE 312
+ + L V ++ A +L ++ +PYVK+ D+ +T K L P+WN+
Sbjct: 9 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQ 68
Query: 313 EYNFTVRDP---ESQAVELAVYDWEQVGKH--DKMGMNVVPLKELTPEE 356
+ ++ + +E+ ++D +V + + +G ++ L+ ++
Sbjct: 69 TFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 117
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (90), Expect = 2e-04
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 417 GGLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 468
G L+V + A+D E NPY +I F +R+TK VKK +P+W + F +
Sbjct: 13 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 72
Query: 469 MLEEPPT--NDRLHVEVC 484
L + +
Sbjct: 73 SPVHRREFRERMLEITLW 90
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.2 bits (192), Expect = 7e-18
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEE 313
Y V + +A L D SDPY+K+ I +K KT V K L+P ++E
Sbjct: 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDET 76
Query: 314 YNFTVRDPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTP-EEPSVKTLDLLKN 367
+ F A+ + +++ + D +G ++PL + E + +++
Sbjct: 77 FTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 77.9 bits (191), Expect = 7e-18
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 257 RPVGILHVKVVKAMNLKK--KDLLGASDPYVKLK---ITEDKLPSKKTTVKHKNLNPEWN 311
RP L V+++ L K K+ DP V ++ + D + + + NP W+
Sbjct: 2 RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60
Query: 312 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 363
E+ F V P+ V V D++ K+D +G + +P L V L
Sbjct: 61 MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLS 112
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 78.7 bits (193), Expect = 8e-18
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 312
Y G L V +++A NLKK D+ G SDPYVK+ + ++ +L KKTT+K LNP +NE
Sbjct: 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE 79
Query: 313 EYNFTVRDPESQAVELAV--YDWEQVGKHDKMGMNVVPLKELTPE 355
++F V + Q V++ V D++++GK+D +G V E
Sbjct: 80 SFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.5 bits (86), Expect = 0.001
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 418 GLLVVIVHEAQDVEGKHHT---NPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 469
G L V++ EA++++ +PY +I R +++KT K +P + E F F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 470 LEEPPTN-DRLHVEVC 484
+ ++ V V
Sbjct: 85 VPFEQIQKVQVVVTVL 100
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.1 bits (189), Expect = 9e-18
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNF 316
+ VGIL VKV+KA +L D G SDP+ L++ D+L + +KNLNPEWN+ + F
Sbjct: 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT---VYKNLNPEWNKVFTF 59
Query: 317 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 376
++D +E+ V+D + D +G +PL + +P+ L +
Sbjct: 60 PIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL-------EQ 111
Query: 377 KSRGQLVVEFIY 388
+G + +E
Sbjct: 112 AFKGVIYLEMDL 123
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 75.7 bits (185), Expect = 5e-17
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS-----------KKTTVKHKNLNP 308
G L + +++A NL +D G SDP+VK+ + + ++T K+LNP
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 309 EWNEEYNFTV---RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365
EWN+ + + +E+ V+D+++ +D +G ++ L + + + + L
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137
Query: 366 K 366
+
Sbjct: 138 E 138
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.5 bits (179), Expect = 2e-16
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 314
Y L V++++A++L KD G SDPYVK+ + D+ +T V K LNP +NE +
Sbjct: 13 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETF 72
Query: 315 NFTVRDPE--SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTL--DLLK 366
F+V E + + +VYD+++ +HD +G V+ E+P + L D+L+
Sbjct: 73 QFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.7 bits (180), Expect = 2e-16
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK--TTVKHKNLNPEWNE 312
Y G L V +++ ++L D G SDP+VKL + D K T +K K LNPE+NE
Sbjct: 10 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNE 69
Query: 313 EYNFTVRDPESQAVEL--AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKN 367
E+ + ++ + L +V+D++ +D +G + + + LKN
Sbjct: 70 EFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLK--HWYECLKN 124
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.2 bits (93), Expect = 1e-04
Identities = 12/116 (10%), Positives = 36/116 (31%), Gaps = 10/116 (8%)
Query: 418 GLLVVIVHEAQD---VEGKHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFM 469
G L+V + ++ +++P+ ++ + + KT+ KK +P + EEF +
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 470 LEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFRQ 525
++ + + + + ++
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGK--SNDYIGGCQLGISAKGERLKHWYECLKNKDKK 128
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.9 bits (178), Expect = 6e-16
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK--TTVKHKNLNPEWNE 312
Y G+L V ++KA NLK DL G SDPYVK + + KK T++K LNP +NE
Sbjct: 15 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNE 74
Query: 313 EYNFTVRDPESQAVELAV--YDWEQVGKHDKMGMNVVPLKELTPEE 356
F V + V L++ D++ +G ++ +G+ V + P
Sbjct: 75 ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG 120
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.7 bits (175), Expect = 1e-15
Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 7/128 (5%)
Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
L + V+ A + K PYV++ + KKT + +P+W + V
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVT 62
Query: 320 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDL-NDGQNEKS 378
+ V+ + + +G + + E + ++K +++ + L D + ++
Sbjct: 63 PV--SKLHFRVWSHQTLKSDVLLGTAALDIYET-LKSNNMKLEEVVVTLQLGGDKEPTET 119
Query: 379 RGQLVVEF 386
G L +
Sbjct: 120 IGDLSICL 127
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.5 bits (161), Expect = 8e-14
Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 6/125 (4%)
Query: 245 EVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK-LPSKKTTVKH 303
+ P L Y L V ++A+ + G D YV+ + +T +K
Sbjct: 11 QAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKK 67
Query: 304 KNLNPEWNEEYNFTVRDPESQA--VELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKT 361
+ L+ W E + + E + L + ++ +H G + L + + +
Sbjct: 68 RQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQW 127
Query: 362 LDLLK 366
+L
Sbjct: 128 GELKT 132
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 5e-04
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 4/60 (6%)
Query: 418 GLLVVIVHEAQDVEGKHHTNPYARILFRGEE----RKTKHVKKNRDPRWEEEFQFMLEEP 473
L V EA + Y + +T K+ WEE L E
Sbjct: 26 AELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEE 85
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 65.3 bits (158), Expect = 2e-13
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 260 GILHVKVVKAMNLKKKDLL-----------GASDPYVKLKITEDKLPSKKTTVKHKNLNP 308
G+L +K+ +A++LK DPY+ L + D +T K K +P
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSP 63
Query: 309 EWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTL 362
W++E+ V + ELAV+ +G D + + +EL
Sbjct: 64 AWHDEFVTDVCNGRKI--ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED 115
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.7 bits (149), Expect = 3e-12
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 260 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 319
+L V V KA ++ + YV LK+ K TT+ + P W +++ F +
Sbjct: 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN----VKSTTIAVRGSQPSWEQDFMFEIN 54
Query: 320 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL--TPEEPSVKTLDLLKNMDLNDGQ 374
+ + V++ + +G +PL+ + + EE + L L + D +
Sbjct: 55 RLDLGLT-VEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSE 109
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.4 bits (112), Expect = 2e-07
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 418 GLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTND 477
LL V V +A+ + N Y L + T + P WE++F F +
Sbjct: 2 SLLCVGVKKAKFDGAQEKFNTYV-TLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGL 60
Query: 478 RLHVE 482
+ V
Sbjct: 61 TVEVW 65
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.2 bits (143), Expect = 2e-11
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 262 LHVKVVKAMNLKKKDLLGASDPYVKLKI-----TEDKLPSKKTTVKHKNLNPEWNEE--Y 314
L + V+ L ++ YV++++ + K + ++NP W EE
Sbjct: 3 LSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 315 NFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364
+ PE ++ +AV + + +G ++P+ L +
Sbjct: 59 FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSGYHHLCLHSE 104
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.3 bits (135), Expect = 2e-10
Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 275 KDLLGASDPYVKLKITEDKLP--SKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 332
+ AS P+ +K+ E K K + PEW ++ + + +++ +
Sbjct: 18 QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV--IQIVLMR 75
Query: 333 WEQVGKHD-KMGMNVVPLKELTPEEPSVKTLDLLKNMDL 370
+ + +G++V+ + + LDL +
Sbjct: 76 AAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKV 114
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.87 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.85 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.83 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.79 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.77 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.76 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.76 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.75 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.75 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.74 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.73 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.73 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.73 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.72 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.72 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.71 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.7 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.7 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.69 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.69 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.69 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.69 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.66 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.65 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.65 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.64 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.64 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.63 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.63 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.63 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.63 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.62 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.62 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.6 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.59 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.59 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.52 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.33 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.28 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.27 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 95.09 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 93.37 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.7e-22 Score=169.70 Aligned_cols=122 Identities=33% Similarity=0.559 Sum_probs=104.1
Q ss_pred CceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCC
Q 009797 257 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 336 (525)
Q Consensus 257 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~ 336 (525)
++.|+|+|+|++|++|+.++..|.+||||+++++++. ++|+++++|.||.|||+|.|.+.++ .+.|.|+|||++..
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~---~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~ 78 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGD 78 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETT
T ss_pred CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeE---EEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCC
Confidence 5789999999999999999999999999999998765 6999999999999999999999875 57899999999999
Q ss_pred CCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 337 GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 337 ~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
++|++||++.++|+++..+..+++++.. .. .....+|+|+++++|.
T Consensus 79 ~~d~~lG~~~i~l~~l~~~~~~~~~l~~------~~-~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 79 KPPDFLGKVAIPLLSIRDGQPNCYVLKN------KD-LEQAFKGVIYLEMDLI 124 (126)
T ss_dssp EEEEECCBCEEEGGGCCSSCCEECCCBC------SC-TTSCCSSEEEEEEEEE
T ss_pred cCcceEEEEEEEHHHCCCCCceEEEccc------cC-CCCceeEEEEEEEEEE
Confidence 9999999999999999877655443322 11 1245679999999875
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.85 E-value=2.7e-21 Score=165.85 Aligned_cols=126 Identities=29% Similarity=0.525 Sum_probs=105.3
Q ss_pred cCCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecC-CCCCCeEeeEEEEEeeCCCCCeEEEEEEe
Q 009797 254 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYD 332 (525)
Q Consensus 254 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d 332 (525)
....+.|+|+|+|++|++|+..+..|++||||++++++.. .+|++++ ++.||.|||+|.|.+.+. ...|+|+|||
T Consensus 4 ~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~---~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d 79 (136)
T d1wfja_ 4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD---QKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFD 79 (136)
T ss_dssp CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCE---EECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECC
T ss_pred CCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeee---EEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEE
Confidence 4567899999999999999999999999999999998765 4677765 689999999999999864 4679999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCC-CeeEEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEE-PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
++..++|++||++.++|.++.... ....|+.+.+ +++.+|+|+++++|.|.
T Consensus 80 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~--------~~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEEC
T ss_pred ecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC--------CCccCEEEEEEEEEEeC
Confidence 999999999999999999985432 3344555432 25778999999999985
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.2e-20 Score=157.92 Aligned_cols=121 Identities=21% Similarity=0.362 Sum_probs=104.7
Q ss_pred eeEEEEEEEeccCCccc---CcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCC
Q 009797 259 VGILHVKVVKAMNLKKK---DLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ 335 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~---d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~ 335 (525)
.+.|+|+|++|+||+.. |..|.+||||++.+++.....++|+++.++.||.|||+|.|.+.+.....|.++|||++.
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence 47899999999999864 446889999999998766556799999999999999999999988777889999999986
Q ss_pred CCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
. +|++||++.++|+++..+.....|++|. ....|++++++++.|
T Consensus 82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~----------~~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN----------QVTEMVLEMSLEVAS 125 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEET----------TTEEEEEEEEEECCC
T ss_pred C-CCCeEEEEEEEHHHccCCCeEEEEEEcc----------CCCeEEEEEEEEEEe
Confidence 4 6899999999999999888888888872 356799999988765
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.79 E-value=4.3e-19 Score=151.59 Aligned_cols=118 Identities=25% Similarity=0.417 Sum_probs=100.5
Q ss_pred ceeEEEEEEEeccCCcccC-----------cCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeE
Q 009797 258 PVGILHVKVVKAMNLKKKD-----------LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAV 326 (525)
Q Consensus 258 ~~g~L~V~v~~A~~L~~~d-----------~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L 326 (525)
..|.|+|+|++|++|++.+ ..+.+||||++++++... .+|+++.++.||.|||+|.|.+.+ .+.|
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~--~~T~~~~~t~~P~Wne~f~f~v~~--~~~l 79 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKTNSPAWHDEFVTDVCN--GRKI 79 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEE--EECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcC--cEeeEEcCCCCccCccEEEEEEec--CCce
Confidence 4799999999999998754 346789999999986553 589999999999999999999975 4689
Q ss_pred EEEEEecCCCCCCCccEEEEEECcccCCCCC--eeEEEecccccccCCCCCCceeeEEEEEEEEEec
Q 009797 327 ELAVYDWEQVGKHDKMGMNVVPLKELTPEEP--SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 391 (525)
Q Consensus 327 ~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (525)
.|+|||++.+++|++||++.++|+++..+.. ...|++| .+.|++++.+.+.|.
T Consensus 80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L------------~p~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL------------EPEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC------------BSSCEEEEEEEEEEE
T ss_pred EEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeC------------CCCcEEEEEEEEEeC
Confidence 9999999999999999999999999976643 4567776 246999999999874
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.2e-18 Score=148.22 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=98.1
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (525)
.+.|.|+|++|++++.++..+.+||||++.++++. ++|++++++.||.|||.|.|.+.. .+.|.|+|||++.+++
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~ 79 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKS 79 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSC
T ss_pred ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeE---EeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCC
Confidence 48899999999999998888899999999999765 589999999999999999999964 4789999999999999
Q ss_pred CCccEEEEEECcccCCC-----CCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 339 HDKMGMNVVPLKELTPE-----EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 339 d~~lG~~~i~L~~l~~~-----~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
|++||++.++|.++... .....++.+.. ........|+|.+.+.+..
T Consensus 80 d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~-----~~~~~~~~G~L~v~l~~~~ 131 (133)
T d2nq3a1 80 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG-----DKEPTETIGDLSICLDGLQ 131 (133)
T ss_dssp CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEE-----SSCTTSEEEEEEEEEESEE
T ss_pred CceEEEEEEEHHHhhhhcCCceeeEEEEEecCC-----CCCCceEEEEEEEEEeeEE
Confidence 99999999999987532 12334444321 1123567899999887654
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=9.8e-19 Score=148.77 Aligned_cols=103 Identities=22% Similarity=0.386 Sum_probs=88.6
Q ss_pred eeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEE-----CCeEE
Q 009797 378 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF-----RGEER 449 (525)
Q Consensus 378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l-----~~~~~ 449 (525)
.+|+|++++.| ..+.|.|+|++|+||+.+ +.+||||++++ +..++
T Consensus 2 ~rG~i~l~~~~---------------------------~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~ 54 (132)
T d1a25a_ 2 RRGRIYIQAHI---------------------------DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQ 54 (132)
T ss_dssp TTCEEEEEEEE---------------------------SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCE
T ss_pred cccEEEEEEEe---------------------------cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCcccc
Confidence 47999998877 357899999999999864 57899999999 34567
Q ss_pred EeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCccceEEEEEcccccc
Q 009797 450 KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
+|+++++|.||+|||.|.|.+........|.|+|||++. +++|++||++.|+|.++..
T Consensus 55 kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~----~~~d~~iG~~~i~l~~l~~ 112 (132)
T d1a25a_ 55 KTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL----TSRNDFMGSLSFGISELQK 112 (132)
T ss_dssp ECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS----SSCCEEEEEEEEEHHHHTT
T ss_pred EEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC----CCCCcEeEEEEEeHHHcCC
Confidence 999999999999999999999875445589999999976 7789999999999999753
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1e-18 Score=148.21 Aligned_cols=116 Identities=22% Similarity=0.263 Sum_probs=92.6
Q ss_pred ceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC---CeEEE
Q 009797 377 KSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEERK 450 (525)
Q Consensus 377 ~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~---~~~~k 450 (525)
.+.|+|.++++|.| ..+.|.|+|++|+||+.. +.+||||++++. .++++
T Consensus 2 ~p~G~l~~sl~y~~-------------------------~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~k 56 (130)
T d1dqva1 2 APCGRISFALRYLY-------------------------GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQ 56 (130)
T ss_dssp CSSCEEEEEEECCS-------------------------SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEE
T ss_pred CCcEEEEEEEEEEC-------------------------CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEe
Confidence 45799999999976 478999999999999863 578999999994 34679
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
|+++++|.||+|||.|.|.+..... ...|.|+|||++. +++|++||++.|++...... .-.+...||
T Consensus 57 T~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~----~~~d~~iG~~~i~~~~~l~~--~~~~~~~W~ 124 (130)
T d1dqva1 57 TKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR----FSRHDLIGQVVLDNLLELAE--QPPDRPLWR 124 (130)
T ss_dssp CCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS----SSCCCEEEEEECCCTTGGGS--SCSSCCCCE
T ss_pred ceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCC----CCCCceEEEEEECchhhhhc--CCCCCcEEE
Confidence 9999999999999999999875433 3479999999975 78899999999986543211 223344576
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=2.5e-18 Score=148.31 Aligned_cols=110 Identities=34% Similarity=0.507 Sum_probs=96.7
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEe
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 332 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d 332 (525)
+....+.|.|+|++|+||+.++..|.+||||++++.+......+|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 29 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d 108 (143)
T d1rsya_ 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEE
Confidence 3456789999999999999999889999999999966555567999999999999999999988532 36789999999
Q ss_pred cCCCCCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 333 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
++..+++++||++.++|+++..+.....|++|
T Consensus 109 ~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 140 (143)
T d1rsya_ 109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEEC
T ss_pred cCCCCCCcEEEEEEEEchhccCCCCCccEEeC
Confidence 99999999999999999999888777888886
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=3.2e-18 Score=145.52 Aligned_cols=106 Identities=34% Similarity=0.552 Sum_probs=91.5
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCCC-CCeEEEEEEecCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWEQ 335 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~v~d~~~ 335 (525)
.+.|.|+|++|+||+.++..|.+||||++++.+. ...+++|+++++|.||.|||+|.|.+.... ...|.|+|||++.
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 93 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 93 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence 5789999999999999999999999999998543 234578999999999999999999987543 4579999999999
Q ss_pred CCCCCccEEEEEECcccCCCCCeeEEEecc
Q 009797 336 VGKHDKMGMNVVPLKELTPEEPSVKTLDLL 365 (525)
Q Consensus 336 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 365 (525)
.++|++||++.++|.++..+ ....|++|.
T Consensus 94 ~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~ 122 (132)
T d1a25a_ 94 TSRNDFMGSLSFGISELQKA-GVDGWFKLL 122 (132)
T ss_dssp SSCCEEEEEEEEEHHHHTTC-CEEEEEECB
T ss_pred CCCCcEeEEEEEeHHHcCCC-CCCeEEECC
Confidence 99999999999999998765 456788774
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=3.8e-18 Score=144.54 Aligned_cols=111 Identities=32% Similarity=0.492 Sum_probs=91.6
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEEe
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 332 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~d 332 (525)
+....+.|.|+|++|+||+.++..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 13 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d 92 (130)
T d1dqva1 13 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD 92 (130)
T ss_dssp CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred EECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEE
Confidence 4556789999999999999999899999999999976555568999999999999999999998643 35679999999
Q ss_pred cCCCCCCCccEEEEEECcc-cCCC-CCeeEEEecc
Q 009797 333 WEQVGKHDKMGMNVVPLKE-LTPE-EPSVKTLDLL 365 (525)
Q Consensus 333 ~~~~~~d~~lG~~~i~L~~-l~~~-~~~~~~~~l~ 365 (525)
++.+++|++||++.+++.. +... .....|++|.
T Consensus 93 ~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~ 127 (130)
T d1dqva1 93 FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127 (130)
T ss_dssp CCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECB
T ss_pred cCCCCCCceEEEEEECchhhhhcCCCCCcEEEecc
Confidence 9999999999999998653 3322 2344566663
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=7e-18 Score=144.52 Aligned_cols=109 Identities=17% Similarity=0.208 Sum_probs=90.0
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC--C---eEEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--G---EERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~--~---~~~k 450 (525)
+|+|+++++|.| ..+.|.|+|++|+||+.. +.+||||++++. + .++|
T Consensus 1 rG~l~~sl~Y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~k 55 (138)
T d1w15a_ 1 RGELLVSLCYQS-------------------------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKK 55 (138)
T ss_dssp CCEEEEEEEEET-------------------------TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEEEcC-------------------------CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCcccc
Confidence 699999999997 477899999999999863 578999999982 2 2458
Q ss_pred eeeecCCCCCcccceEEEEecCCCCCC-eEEEEEEEcccCccCCCCCccceEEEEEccccccchhhh
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPTND-RLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECC 516 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~~~-~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~ 516 (525)
|++++++.||.|||.|.|.+......+ .|.|+|||++. ++++++||++.|++.+...+.++|
T Consensus 56 T~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~~~~~~~hW 118 (138)
T d1w15a_ 56 THVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER----GSRNEVIGRLVLGATAEGSGGGHW 118 (138)
T ss_dssp CCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT----TSCCEEEEEEEESTTCCSHHHHHH
T ss_pred ceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCC----CCCCCEEEEEEEcchhCCchHHHH
Confidence 999999999999999999987654443 79999999976 778999999999999866555543
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=3e-18 Score=147.82 Aligned_cols=116 Identities=16% Similarity=0.273 Sum_probs=94.5
Q ss_pred CCceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEE---CCeE
Q 009797 375 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF---RGEE 448 (525)
Q Consensus 375 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l---~~~~ 448 (525)
.....|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++ +.++
T Consensus 16 ~~~~~G~l~~sl~y~~-------------------------~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~ 70 (143)
T d1rsya_ 16 EEEKLGKLQYSLDYDF-------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKK 70 (143)
T ss_dssp --CCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSC
T ss_pred chhcceEEEEEEEEeC-------------------------CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCee
Confidence 3567899999999976 467899999999999864 57899999999 3456
Q ss_pred EEeeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCC
Q 009797 449 RKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPF 523 (525)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~ 523 (525)
++|+++++|.||+|||.|.|.+.... ....|.|+|||++. ++++++||++.|+|.++..++ ...+||
T Consensus 71 ~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~L~~~~~~~----~~~~W~ 138 (143)
T d1rsya_ 71 FETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGH----VTEEWR 138 (143)
T ss_dssp EECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS----SSCCEEEEEEEEEGGGCCCSS----CEEEEE
T ss_pred EEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC----CCCCcEEEEEEEEchhccCCC----CCccEE
Confidence 79999999999999999999886432 23589999999975 678999999999999985443 234565
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=5.3e-18 Score=142.93 Aligned_cols=92 Identities=26% Similarity=0.360 Sum_probs=83.1
Q ss_pred CcceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
..|+|.|+|++|+||+.. +.+||||++++++++++|+++++|.||+|||.|+|.+.++ .+.|.|+|||++.
T Consensus 4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~---- 77 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDG---- 77 (126)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEET----
T ss_pred ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc--CceeEEEEEEccC----
Confidence 579999999999999873 5789999999999999999999999999999999999874 4689999999976
Q ss_pred CCCCccceEEEEEccccccch
Q 009797 493 LHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~~~~ 513 (525)
+++|++||++.|+|.++..+.
T Consensus 78 ~~~d~~lG~~~i~l~~l~~~~ 98 (126)
T d2ep6a1 78 DKPPDFLGKVAIPLLSIRDGQ 98 (126)
T ss_dssp TEEEEECCBCEEEGGGCCSSC
T ss_pred CcCcceEEEEEEEHHHCCCCC
Confidence 678999999999999986554
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=1.3e-17 Score=142.68 Aligned_cols=107 Identities=17% Similarity=0.287 Sum_probs=90.0
Q ss_pred eeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----eEEE
Q 009797 379 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 450 (525)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~~~k 450 (525)
+|+|.++++|.| ..+.|.|+|++|+||+.. +.+||||++++.. .++|
T Consensus 1 rG~l~l~l~Y~~-------------------------~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~k 55 (137)
T d2cm5a1 1 RGKILVSLMYST-------------------------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHK 55 (137)
T ss_dssp CCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEE
T ss_pred CcEEEEEEEEEC-------------------------CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeec
Confidence 699999999987 478999999999999863 5799999999832 3569
Q ss_pred eeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchh
Q 009797 451 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQE 514 (525)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~ 514 (525)
|+++++|.||+|||.|.|.+..... ...|.|.|||++. ++++++||++.|++.++..+.+
T Consensus 56 T~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~----~~~~~~iG~~~i~l~~~~~~~~ 116 (137)
T d2cm5a1 56 TQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI----GKSNDYIGGCQLGISAKGERLK 116 (137)
T ss_dssp CCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCEEEEEEEEETTCCHHHHH
T ss_pred CEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCC----CCCCCEEEEEEeCccccCcchh
Confidence 9999999999999999999875433 2489999999875 7889999999999987644433
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=5e-17 Score=137.72 Aligned_cols=122 Identities=25% Similarity=0.448 Sum_probs=90.7
Q ss_pred eEEEEEEEeccCCccc--CcCCCCCcEEEEEEcCCc--CCceeeeecC-CCCCCeEeeEEEEEeeCCCCCeEEEEEEecC
Q 009797 260 GILHVKVVKAMNLKKK--DLLGASDPYVKLKITEDK--LPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYDWE 334 (525)
Q Consensus 260 g~L~V~v~~A~~L~~~--d~~g~~dpyv~v~~~~~~--~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~ 334 (525)
..|+|+|++|++|+.. +..+++||||++++.+.. ...++|++++ ++.||.|||+|.|.+..+....|.++|||+|
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 4799999999999754 456789999999996432 2346788765 4579999999999998777788999999999
Q ss_pred CCCCCCccEEEEEECcccCCCCCeeEEEecccccccCCCCCCceeeEEEEEEEEE
Q 009797 335 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 389 (525)
Q Consensus 335 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (525)
..++|++||++.++|+++..+ ..+++|... . ...-..++|.+.+.+.
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~---~--g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSK---N--GDQHPSATLFVKISIQ 130 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCE---EEEEEEECT---T--SCEEEEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEEEEeccCCC---CEEEECCCC---C--cCCCCCCEEEEEEEEE
Confidence 999999999999999999765 235555321 0 1122466777777653
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=5.8e-17 Score=138.61 Aligned_cols=107 Identities=15% Similarity=0.059 Sum_probs=92.3
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCCCCCCcEEEEEECC----eEEEe
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRG----EERKT 451 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~dPyv~v~l~~----~~~kT 451 (525)
.+..|+|++++.|.+ ..+.|.|+|++|++|+..+.+||||++++.+ ..++|
T Consensus 9 ~~~~~~l~~sl~y~~-------------------------~~~~L~V~v~~a~~L~~~g~~dpyVkv~l~~~~~~~~~kT 63 (138)
T d1wfma_ 9 WNQAPKLHYCLDYDC-------------------------QKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQT 63 (138)
T ss_dssp CSSCCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEEC
T ss_pred CCcCCEEEEEEEECC-------------------------CCCEEEEEEEEcCCCCCCCCcCcEEEEEECCCCCccceee
Confidence 456799999999976 4678999999999999888899999999954 24689
Q ss_pred eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEcccccc
Q 009797 452 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRF 511 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~ 511 (525)
++++++.||+|||.|.|.+..... ...|.|+|||.+. ++++++||++.|+|.++..
T Consensus 64 ~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~----~~~~~~iG~~~i~L~~l~~ 120 (138)
T d1wfma_ 64 ALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR----FSRHSVAGELRLGLDGTSV 120 (138)
T ss_dssp CCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS----SCTTSCSEEEEEESSSSSS
T ss_pred eEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc----cccceeeeEEEEEhHHccC
Confidence 999999999999999999976533 3489999999976 7889999999999999743
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=7.4e-18 Score=145.22 Aligned_cols=108 Identities=25% Similarity=0.439 Sum_probs=91.7
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcC-----------CceeeeecCCCCCCeEeeEEEEEeeC---CCCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL-----------PSKKTTVKHKNLNPEWNEEYNFTVRD---PESQ 324 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~-----------~~~kT~v~~~t~nP~w~e~f~f~v~~---~~~~ 324 (525)
.|.|.|+|++|+||+.++..|.+||||++++.+... .+++|++++++.||.|||+|.|.... ....
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence 588999999999999999999999999999954321 12579999999999999999997432 2366
Q ss_pred eEEEEEEecCCCCCCCccEEEEEECcccCCCCCeeEEEeccc
Q 009797 325 AVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 366 (525)
Q Consensus 325 ~L~i~v~d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 366 (525)
.|.|+|||++.+++|++||++.++|.++..+.....|++|.+
T Consensus 97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~ 138 (142)
T d1rh8a_ 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcC
Confidence 899999999999999999999999999988777778888743
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.9e-17 Score=137.75 Aligned_cols=110 Identities=24% Similarity=0.406 Sum_probs=90.2
Q ss_pred CCCceeEEEEEEEeccCCcccCcCC-CCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCC---CCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g-~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~v 330 (525)
+....+.|.|+|++|+||+.++..+ .+||||++++.+......+|++++++.||.|||+|.|..... ....|+|+|
T Consensus 17 Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V 96 (138)
T d1ugka_ 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI 96 (138)
T ss_dssp EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEE
Confidence 3455789999999999999888665 479999999976655567999999999999999999974322 245799999
Q ss_pred EecCCCCCCCccEEEEEECcccCCCC-CeeEEEec
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELTPEE-PSVKTLDL 364 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~l 364 (525)
||++.+++|++||++.++|+++...+ ..+.|..+
T Consensus 97 ~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~ 131 (138)
T d1ugka_ 97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI 131 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred EECCCCCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence 99999999999999999999986544 44556554
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=9.5e-17 Score=137.26 Aligned_cols=108 Identities=19% Similarity=0.312 Sum_probs=89.5
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC----CCCCcEEEEEE---CCeE
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILF---RGEE 448 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~l---~~~~ 448 (525)
+...|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++ +..+
T Consensus 5 ~~~~G~l~~sl~Y~~-------------------------~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~ 59 (138)
T d1ugka_ 5 SSGLGTLFFSLEYNF-------------------------ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHK 59 (138)
T ss_dssp CCCCCEEEEEEEEEG-------------------------GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSE
T ss_pred CCCCEEEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEe
Confidence 456899999999987 367899999999999863 24799999999 3456
Q ss_pred EEeeeecCCCCCcccceEEEE-ecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 449 RKTKHVKKNRDPRWEEEFQFM-LEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
+||++++++.||.|||.|.|. +..... ...|.|+|||++. +++|++||++.|+|.++...
T Consensus 60 ~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~----~~~~~~iG~~~i~L~~~~~~ 121 (138)
T d1ugka_ 60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR----FSRDDIIGEVLIPLSGIELS 121 (138)
T ss_dssp EECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS----SCCCCCCEEEEEECTTCCCT
T ss_pred EeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCC----CCCCcEEEEEEEEcccccCC
Confidence 799999999999999999997 433222 2489999999975 78899999999999997433
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.5e-17 Score=138.53 Aligned_cols=113 Identities=21% Similarity=0.402 Sum_probs=86.6
Q ss_pred eEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEEC-----CeEEEe
Q 009797 380 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEERKT 451 (525)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~-----~~~~kT 451 (525)
|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++. ..+++|
T Consensus 1 G~l~l~l~y~~-------------------------~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT 55 (125)
T d2bwqa1 1 GQLSIKLWFDK-------------------------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT 55 (125)
T ss_dssp CEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEEC
T ss_pred CEEEEEEEEEC-------------------------CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCcccccc
Confidence 89999999986 467999999999999863 578999999983 245799
Q ss_pred eeecCCCCCcccceEEEE-ecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhcccCCCCC
Q 009797 452 KHVKKNRDPRWEEEFQFM-LEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCRMKNDPFR 524 (525)
Q Consensus 452 ~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~~~~~~~~ 524 (525)
+++++|.||.|||.|.|. +..... ...|.|+|||.+.. + .+++++||++.|+|.++...+ ..+||.
T Consensus 56 ~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~-~-~~~~~~iG~~~i~l~~~~~~~-----~~~Wy~ 123 (125)
T d2bwqa1 56 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARV-R-EEESEFLGEILIELETALLDD-----EPHWYK 123 (125)
T ss_dssp CCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC---------CEEEEEEEEEGGGCCCSS-----CEEEEE
T ss_pred CEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCCC-C-CCCCeeEEEEEEEchhcCCCC-----CCEEEe
Confidence 999999999999999996 443222 24899999998751 0 245679999999999985443 246874
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=1.4e-16 Score=133.58 Aligned_cols=121 Identities=19% Similarity=0.335 Sum_probs=90.2
Q ss_pred eeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCcCCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCC
Q 009797 259 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (525)
Q Consensus 259 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (525)
++.|.|+|++|++|++++ +.||||++++++.+ .+|++++ +.||.|||+|.|.+.++ .+.|.|+|||++.. +
T Consensus 1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k---~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~ 71 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK---STTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-W 71 (128)
T ss_dssp CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEE---EECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-C
T ss_pred CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEE---EEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCc-C
Confidence 378999999999999876 67999999998754 5777775 55999999999999876 57899999999875 6
Q ss_pred CCccEEEEEECcccCCC--CCeeEEEecccccccCC----CCCCceeeEEEEEEEE
Q 009797 339 HDKMGMNVVPLKELTPE--EPSVKTLDLLKNMDLND----GQNEKSRGQLVVEFIY 388 (525)
Q Consensus 339 d~~lG~~~i~L~~l~~~--~~~~~~~~l~~~~~~~~----~~~~~~~G~l~l~l~~ 388 (525)
|++||++.|+|+++..+ .....|+.|........ .........|.++++|
T Consensus 72 d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 72 DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp EEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred CcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 89999999999999643 34456777743221110 0012234577777776
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=5.4e-17 Score=142.06 Aligned_cols=111 Identities=20% Similarity=0.307 Sum_probs=92.9
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECC-----e
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----E 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~-----~ 447 (525)
.+..|+|.++++|.| ..+.|.|+|++|+||+.. +.+||||++++.. .
T Consensus 8 ~~~~G~l~~sl~Y~~-------------------------~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~ 62 (157)
T d1uowa_ 8 LEKLGDICFSLRYVP-------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK 62 (157)
T ss_dssp GGCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEE
T ss_pred ceeeeEEEEEEEEcC-------------------------CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCcccc
Confidence 457899999999987 478999999999999863 5799999999843 2
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEcccCccCCCCCccceEEEEEccccccchhh
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQEC 515 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~ 515 (525)
.+||++++++.||+|||.|.|.+...... ..|.|+|||++. ++++++||++.|++.+...+.++
T Consensus 63 ~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~~~~~~~h 127 (157)
T d1uowa_ 63 KKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK----IGKNDAIGKVFVGYNSTGAELRH 127 (157)
T ss_dssp EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCCEEEEEEEETTCCHHHHHH
T ss_pred ceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCC----CCCCceeEEEEEecccCChhHHH
Confidence 35899999999999999999998765433 489999999986 78899999999999876444333
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.9e-16 Score=135.33 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=92.3
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc-CCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK-LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVY 331 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~ 331 (525)
+....+.|.|+|++|++|+. .|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 21 y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T d1wfma_ 21 YDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp EETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred ECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEe
Confidence 44567899999999999953 4778999999996542 3346899999999999999999998643 3678999999
Q ss_pred ecCCCCCCCccEEEEEECcccCCCCCeeEEEeccc
Q 009797 332 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 366 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 366 (525)
|++.++++++||++.|+|.++........|++|..
T Consensus 98 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~ 132 (138)
T d1wfma_ 98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred eecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence 99999999999999999999987777888988743
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.4e-16 Score=132.38 Aligned_cols=109 Identities=20% Similarity=0.398 Sum_probs=84.6
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEE-eeCC--CCCeEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFT-VRDP--ESQAVELA 329 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~-v~~~--~~~~L~i~ 329 (525)
+....+.|.|+|++|+||+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|. +... ....|.|+
T Consensus 9 y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~ 88 (125)
T d2bwqa1 9 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 88 (125)
T ss_dssp EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred EECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEE
Confidence 34456899999999999999988899999999999543 3344789999999999999999996 4322 25679999
Q ss_pred EEecCCC--CCCCccEEEEEECcccCCCCCeeEEEec
Q 009797 330 VYDWEQV--GKHDKMGMNVVPLKELTPEEPSVKTLDL 364 (525)
Q Consensus 330 v~d~~~~--~~d~~lG~~~i~L~~l~~~~~~~~~~~l 364 (525)
|||++.. +++++||++.++|+++..+.. ..|++|
T Consensus 89 v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L 124 (125)
T d2bwqa1 89 LWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 124 (125)
T ss_dssp EEEC-------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred EEECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeC
Confidence 9999875 345699999999999876543 457665
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=2.6e-17 Score=141.69 Aligned_cols=113 Identities=15% Similarity=0.262 Sum_probs=90.3
Q ss_pred ceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECCe------
Q 009797 377 KSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE------ 447 (525)
Q Consensus 377 ~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~------ 447 (525)
...|+|++++.|. .|.|.|+|++|+||+.. +.+||||++++.+.
T Consensus 4 p~~G~l~lsl~y~---------------------------~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~ 56 (142)
T d1rh8a_ 4 PITGEIQLQINYD---------------------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMV 56 (142)
T ss_dssp CCCCEEEEEEEEE---------------------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEE
T ss_pred CcceEEEEEEEEe---------------------------CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccc
Confidence 4679999999993 46799999999999864 57899999998431
Q ss_pred --------EEEeeeecCCCCCcccceEEEEecCC--CCCCeEEEEEEEcccCccCCCCCccceEEEEEccccccchhhhc
Q 009797 448 --------ERKTKHVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFKQECCR 517 (525)
Q Consensus 448 --------~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~ 517 (525)
++||+++++|.||.|||.|.|.+... .....|.|+|||++. +++|++||++.|+|.++..+ .
T Consensus 57 ~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~----~~~~~~lG~~~i~L~~l~~~----~ 128 (142)
T d1rh8a_ 57 VQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDR----FSSNDFLGEVLIDLSSTSHL----D 128 (142)
T ss_dssp CCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECS----SSCEEEEEEEEEETTSCGGG----T
T ss_pred cccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecC----CCCCeeeEEEEEEhHHcCCC----C
Confidence 23799999999999999999974332 123589999999976 77899999999999998544 2
Q ss_pred ccCCCCC
Q 009797 518 MKNDPFR 524 (525)
Q Consensus 518 ~~~~~~~ 524 (525)
...+||.
T Consensus 129 ~~~~W~~ 135 (142)
T d1rh8a_ 129 NTPRWYP 135 (142)
T ss_dssp TCCEEEE
T ss_pred CceEEEE
Confidence 3456763
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=2e-17 Score=142.89 Aligned_cols=105 Identities=21% Similarity=0.330 Sum_probs=89.6
Q ss_pred CceeeEEEEEEEEEecCCCCCCCcccccccccCCCCCCCCCcceEEEEEEeeecCCCC---CCCCcEEEEEECCe-----
Q 009797 376 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE----- 447 (525)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~----- 447 (525)
....|+|+++++|.| ..|.|.|+|++|+||+.. +.+||||++++.+.
T Consensus 3 ~~~~G~l~~sl~Y~~-------------------------~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~ 57 (145)
T d1dqva2 3 KADLGELNFSLCYLP-------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLK 57 (145)
T ss_dssp CSCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTS
T ss_pred cCcceEEEEEEEEcC-------------------------CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccce
Confidence 356899999999987 478999999999999763 56899999998653
Q ss_pred EEEeeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccCccCCCCCccceEEEEEcccc
Q 009797 448 ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKVLFQFYFIFYLVH 509 (525)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~~d~~lG~v~I~l~~~ 509 (525)
++||+++++|.||+|||.|.|.+..... ...|.|+|+|++. ++++++||++.|+++.+
T Consensus 58 ~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~----~~~~~~iG~~~i~l~~~ 116 (145)
T d1dqva2 58 KRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC----IGHNEVIGVCRVGPEAA 116 (145)
T ss_dssp CEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCS----SSCCEEEEECCCSSCTT
T ss_pred eecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCC----CCCCcEEEEEEECchHc
Confidence 4689999999999999999998875322 2479999999975 78899999999999876
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=3.8e-16 Score=130.81 Aligned_cols=87 Identities=23% Similarity=0.300 Sum_probs=77.4
Q ss_pred ceEEEEEEeeecCCCCCCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCCCCCc
Q 009797 418 GLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKV 497 (525)
Q Consensus 418 g~L~V~v~~a~~L~~~~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~~d~ 497 (525)
++|.|+|.+|++|.+++..||||++.+++.+.+|++++ +.||+|||.|.|.+.++ ++.|.|+|||++. . .|+
T Consensus 2 ~~L~V~v~~a~~l~~~~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~--~~~L~v~V~d~~~----~-~d~ 73 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL--DLGLTVEVWNKGL----I-WDT 73 (128)
T ss_dssp EEEEEEEEEEECSSCGGGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC--SSEEEEEEEECCS----S-CEE
T ss_pred eEEEEEEEEEECCCCCCCcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc--cceEEEEEEeCCC----c-CCc
Confidence 68999999999999988999999999999988999886 45999999999999875 4689999999864 3 589
Q ss_pred cceEEEEEccccccc
Q 009797 498 LFQFYFIFYLVHRFK 512 (525)
Q Consensus 498 ~lG~v~I~l~~~~~~ 512 (525)
+||++.|+|.++...
T Consensus 74 ~lG~~~I~L~~l~~~ 88 (128)
T d2cjta1 74 MVGTVWIPLRTIRQS 88 (128)
T ss_dssp EEEEEEEEGGGSCBC
T ss_pred ceEEEEEEehhhccC
Confidence 999999999998544
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.63 E-value=3.5e-16 Score=133.43 Aligned_cols=90 Identities=19% Similarity=0.287 Sum_probs=80.0
Q ss_pred CCcceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeec-CCCCCcccceEEEEecCCCCCCeEEEEEEEcccCc
Q 009797 415 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI 490 (525)
Q Consensus 415 ~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 490 (525)
...|.|.|+|++|++|+.. +.+||||++++++++++|++++ ++.||+|||.|+|.+.+. ...|+|+|||++.
T Consensus 7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~--~~~L~v~V~d~d~-- 82 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG--TTELKAKIFDKDV-- 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS--CCEEEEEECCSSS--
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc--cceEEEEEEEecC--
Confidence 3579999999999999874 6799999999999999999987 589999999999999864 3579999999986
Q ss_pred cCCCCCccceEEEEEccccc
Q 009797 491 GLLHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 491 ~~~~~d~~lG~v~I~l~~~~ 510 (525)
+++|++||++.|+|.++.
T Consensus 83 --~~~d~~iG~~~i~L~~l~ 100 (136)
T d1wfja_ 83 --GTEDDAVGEATIPLEPVF 100 (136)
T ss_dssp --CTTTCCSEEEEEESHHHH
T ss_pred --CCCCCEEEEEEEEhHHhc
Confidence 678999999999999863
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=6e-16 Score=130.09 Aligned_cols=92 Identities=16% Similarity=0.349 Sum_probs=79.4
Q ss_pred CcceEEEEEEeeecCCCC------CCCCcEEEEEECC---eEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009797 416 GGGLLVVIVHEAQDVEGK------HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~------~~~dPyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
+++.|+|+|++|+||+.. +.+||||++.+++ ++++|++++++.||.|||+|+|.+.+. ....|.|+|||+
T Consensus 1 ss~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~-~~~~L~v~V~d~ 79 (126)
T d1rlwa_ 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDA 79 (126)
T ss_dssp CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEEC
T ss_pred CCcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCc-ccCcEEEEEEEC
Confidence 367899999999999863 5789999999976 567999999999999999999999865 456899999999
Q ss_pred ccCccCCCCCccceEEEEEccccccch
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLVHRFKQ 513 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~~~~~~ 513 (525)
+. .+|++||++.|+|.++..+.
T Consensus 80 d~-----~~d~~lG~~~i~L~~l~~~~ 101 (126)
T d1rlwa_ 80 NY-----VMDETLGTATFTVSSMKVGE 101 (126)
T ss_dssp CS-----SCCEEEEEEEEEGGGSCTTC
T ss_pred CC-----CCCCeEEEEEEEHHHccCCC
Confidence 64 45899999999999986553
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=6.3e-16 Score=132.10 Aligned_cols=97 Identities=32% Similarity=0.432 Sum_probs=77.1
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCCC--CCeEEEEEE
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVY 331 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v~ 331 (525)
....+.|.|+|++|+||+.++..+.+||||++++.+. ...+++|++++++.||.|||+|.|.+.... ...|.|+||
T Consensus 11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~ 90 (138)
T d1w15a_ 11 QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVL 90 (138)
T ss_dssp ETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEE
T ss_pred cCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEE
Confidence 3456899999999999999998899999999998432 333468999999999999999999986433 446999999
Q ss_pred ecCCCCCCCccEEEEEECccc
Q 009797 332 DWEQVGKHDKMGMNVVPLKEL 352 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l 352 (525)
|++..+++++||++.+++...
T Consensus 91 d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 91 DSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp ECCTTSCCEEEEEEEESTTCC
T ss_pred eCCCCCCCCEEEEEEEcchhC
Confidence 999999999999999999764
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=8.6e-16 Score=130.17 Aligned_cols=88 Identities=22% Similarity=0.355 Sum_probs=79.0
Q ss_pred CcceEEEEEEeeecCCCC---CCCCcEEEEEECCeEEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccC
Q 009797 416 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 492 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 492 (525)
..+.|.|+|++|++++.. +.+||||++.++++.++|+++++|.||+|||.|+|.+.. .+.|.|+|||++.
T Consensus 4 ~~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~---~~~l~~~V~d~d~---- 76 (133)
T d2nq3a1 4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQT---- 76 (133)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCS----
T ss_pred cceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe---cceeEEEEEEccC----
Confidence 347899999999999863 468999999999999999999999999999999999875 3689999999986
Q ss_pred CCCCccceEEEEEccccc
Q 009797 493 LHPKVLFQFYFIFYLVHR 510 (525)
Q Consensus 493 ~~~d~~lG~v~I~l~~~~ 510 (525)
+++|++||++.|+|.++.
T Consensus 77 ~~~d~~iG~~~i~L~~l~ 94 (133)
T d2nq3a1 77 LKSDVLLGTAALDIYETL 94 (133)
T ss_dssp SSCCEEEEEEEEEHHHHH
T ss_pred CCCCceEEEEEEEHHHhh
Confidence 788999999999998863
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=8.1e-16 Score=131.31 Aligned_cols=98 Identities=30% Similarity=0.519 Sum_probs=84.3
Q ss_pred CCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCC--CCCeEEEEEE
Q 009797 256 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVY 331 (525)
Q Consensus 256 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~v~ 331 (525)
....|.|.|+|++|+||+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.+.||
T Consensus 11 ~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~ 90 (137)
T d2cm5a1 11 STQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVW 90 (137)
T ss_dssp ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEE
T ss_pred ECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEee
Confidence 4567899999999999999888899999999998542 33456899999999999999999998643 3568999999
Q ss_pred ecCCCCCCCccEEEEEECcccC
Q 009797 332 DWEQVGKHDKMGMNVVPLKELT 353 (525)
Q Consensus 332 d~~~~~~d~~lG~~~i~L~~l~ 353 (525)
|++..+++++||++.+++..+.
T Consensus 91 ~~~~~~~~~~iG~~~i~l~~~~ 112 (137)
T d2cm5a1 91 DYDIGKSNDYIGGCQLGISAKG 112 (137)
T ss_dssp ECCSSSCCEEEEEEEEETTCCH
T ss_pred eCCCCCCCCEEEEEEeCccccC
Confidence 9999999999999999998653
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=1.3e-15 Score=133.17 Aligned_cols=98 Identities=39% Similarity=0.637 Sum_probs=84.4
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCC--cCCceeeeecCCCCCCeEeeEEEEEeeCCC--CCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~v 330 (525)
+....+.|.|+|++|+||+..+..+.+||||++++... ....++|++++++.||+|||+|.|.+...+ ...|.|+|
T Consensus 20 Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v 99 (157)
T d1uowa_ 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 99 (157)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEE
Confidence 34557899999999999999998899999999998543 233468999999999999999999987543 56899999
Q ss_pred EecCCCCCCCccEEEEEECccc
Q 009797 331 YDWEQVGKHDKMGMNVVPLKEL 352 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l 352 (525)
||++.++++++||++.+++...
T Consensus 100 ~d~~~~~~~~~iG~~~i~l~~~ 121 (157)
T d1uowa_ 100 LDYDKIGKNDAIGKVFVGYNST 121 (157)
T ss_dssp EECCSSSCCCEEEEEEEETTCC
T ss_pred cccCCCCCCceeEEEEEecccC
Confidence 9999999999999999999764
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=3.2e-15 Score=124.48 Aligned_cols=110 Identities=17% Similarity=0.268 Sum_probs=86.2
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeCCCCCeEEEEEEecCCCCC
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 338 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~v~d~~~~~~ 338 (525)
.+.|.++.+..++. ..+.+||||+|++.+.. ...++|+++++|+||+|||+|.|.+.+ .+.|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---- 77 (123)
T d1bdya_ 6 RISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---- 77 (123)
T ss_dssp EEEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET----
T ss_pred EEEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc----
Confidence 34455555555544 46889999999996532 223579999999999999999999975 468999999985
Q ss_pred CCccEEEEEECcccC-----CCCCeeEEEecccccccCCCCCCceeeEEEEEEEEEe
Q 009797 339 HDKMGMNVVPLKELT-----PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 390 (525)
Q Consensus 339 d~~lG~~~i~L~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (525)
++++|.+.+++.++. .+.....|+++ .++|+|+++++|++
T Consensus 78 d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L------------~~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 EDPMSEVTVGVSVLAERCKKNNGKAEFWLDL------------QPQAKVLMCVQYFL 122 (123)
T ss_dssp TEEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------BSSCEEEEEEEEEE
T ss_pred ccccCccEEehhheeeccccCCCcccEEEeC------------CCCEEEEEEEEEec
Confidence 689999999999885 34456778876 35899999999986
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.59 E-value=1.9e-15 Score=128.55 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=78.8
Q ss_pred CcceEEEEEEeeecCCC--------------CCCCCcEEEEEECCeE-EEeeeecCCCCCcccceEEEEecCCCCCCeEE
Q 009797 416 GGGLLVVIVHEAQDVEG--------------KHHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 480 (525)
Q Consensus 416 ~~g~L~V~v~~a~~L~~--------------~~~~dPyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~ 480 (525)
-+|.|+|+|++|++|++ .+.+||||+++++++. .+|++++++.||+|||.|+|.+.+. +.|.
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~---~~l~ 80 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIE 80 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC---CceE
Confidence 47999999999999974 2468999999999876 4899999999999999999999753 6899
Q ss_pred EEEEEcccCccCCCCCccceEEEEEccccccc
Q 009797 481 VEVCSVSSRIGLLHPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 481 i~V~d~~~~~~~~~~d~~lG~v~I~l~~~~~~ 512 (525)
|+|||++. +++|++||.+.|+|.++...
T Consensus 81 i~V~d~~~----~~~d~~iG~~~i~l~~l~~~ 108 (136)
T d1gmia_ 81 LAVFHDAP----IGYDDFVANCTIQFEELLQN 108 (136)
T ss_dssp EEEEECCS----SSSCEEEEEEEEEHHHHTST
T ss_pred EEEEEecC----CCCceeEEEEEEEHHHhhhc
Confidence 99999975 78899999999999997543
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=3e-15 Score=126.50 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=78.4
Q ss_pred ceEEEEEEeeecCCC-----CCCCCcEEEEEECC-----eEEEeeeecCC-CCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009797 418 GLLVVIVHEAQDVEG-----KHHTNPYARILFRG-----EERKTKHVKKN-RDPRWEEEFQFMLEEPPTNDRLHVEVCSV 486 (525)
Q Consensus 418 g~L~V~v~~a~~L~~-----~~~~dPyv~v~l~~-----~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 486 (525)
..|.|+|++|++|+. .+.+||||++++.+ ++++|++++++ .||.|||+|+|.+..+ ..+.|.|+|||+
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~-~~~~L~~~V~D~ 82 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMVEDY 82 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCG-GGCEEEEEEEEC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcc-hhceEEEEEEEe
Confidence 479999999999974 24689999999943 56799988755 7999999999998765 446899999999
Q ss_pred ccCccCCCCCccceEEEEEccccccchhhhc
Q 009797 487 SSRIGLLHPKVLFQFYFIFYLVHRFKQECCR 517 (525)
Q Consensus 487 ~~~~~~~~~d~~lG~v~I~l~~~~~~~~~~~ 517 (525)
+. +++|++||++.|+|.++..|.+...
T Consensus 83 d~----~~~d~~iG~~~i~l~~l~~g~~~~~ 109 (131)
T d1qasa2 83 DS----SSKNDFIGQSTIPWNSLKQGYRHVH 109 (131)
T ss_dssp CT----TTCCEEEEEEEEEGGGBCCEEEEEE
T ss_pred cC----CCCCcEEEEEEEEEeccCCCCEEEE
Confidence 86 6789999999999999987765443
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=1.7e-15 Score=130.53 Aligned_cols=99 Identities=36% Similarity=0.604 Sum_probs=84.9
Q ss_pred CCCceeEEEEEEEeccCCcccCcCCCCCcEEEEEEcCCc--CCceeeeecCCCCCCeEeeEEEEEeeC--CCCCeEEEEE
Q 009797 255 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 330 (525)
Q Consensus 255 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~v 330 (525)
+....|.|.|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+.. .....|.|.|
T Consensus 15 Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v 94 (145)
T d1dqva2 15 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAV 94 (145)
T ss_dssp EETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEE
T ss_pred EcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEE
Confidence 445678999999999999998888999999999986543 234689999999999999999998763 2356799999
Q ss_pred EecCCCCCCCccEEEEEECcccC
Q 009797 331 YDWEQVGKHDKMGMNVVPLKELT 353 (525)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~L~~l~ 353 (525)
||++..+++++||++.+++..+.
T Consensus 95 ~d~~~~~~~~~iG~~~i~l~~~~ 117 (145)
T d1dqva2 95 VDYDCIGHNEVIGVCRVGPEAAD 117 (145)
T ss_dssp EECCSSSCCEEEEECCCSSCTTC
T ss_pred EecCCCCCCcEEEEEEECchHcC
Confidence 99999999999999999998764
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.6e-12 Score=107.63 Aligned_cols=87 Identities=23% Similarity=0.491 Sum_probs=66.9
Q ss_pred EEEEEEEeccCCcccCcCCCCCcEEEEEEcC---CcCCceeeee--cCCCCCCeEeeE-EEE-EeeCCCCCeEEEEEEec
Q 009797 261 ILHVKVVKAMNLKKKDLLGASDPYVKLKITE---DKLPSKKTTV--KHKNLNPEWNEE-YNF-TVRDPESQAVELAVYDW 333 (525)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~---~~~~~~kT~v--~~~t~nP~w~e~-f~f-~v~~~~~~~L~i~v~d~ 333 (525)
.|+|+|++|++|+.+ +.||||++++-| +...+.+|++ .+++.||.|||+ |.+ .+..++...|.|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 689999999999865 479999999854 1222233433 478899999975 444 45555566899999997
Q ss_pred CCCCCCCccEEEEEECcccCCC
Q 009797 334 EQVGKHDKMGMNVVPLKELTPE 355 (525)
Q Consensus 334 ~~~~~d~~lG~~~i~L~~l~~~ 355 (525)
+ |++||++.+|++.+..+
T Consensus 78 d----~~~lG~~~ipl~~l~~G 95 (122)
T d2zkmx2 78 G----NKFLGHRIIPINALNSG 95 (122)
T ss_dssp T----TEEEEEEEEEGGGBCCE
T ss_pred C----CCEEEEEEEEcccCcCC
Confidence 5 78999999999999876
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=2.4e-12 Score=106.67 Aligned_cols=82 Identities=10% Similarity=0.156 Sum_probs=65.2
Q ss_pred EEEEEEeeecCCC-CCCCCcEEEEEECCe-----EEEeeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccCccCC
Q 009797 420 LVVIVHEAQDVEG-KHHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 493 (525)
Q Consensus 420 L~V~v~~a~~L~~-~~~~dPyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 493 (525)
+.+.++.+..++. .+.+||||++++.+. .++|+++++|+||+|||+|+|.+.+. +.|.|.|+|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~---~~l~i~V~d~d------ 77 (123)
T d1bdya_ 7 ISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG---RVIQIVLMRAA------ 77 (123)
T ss_dssp EEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT---CEEEEEEEEET------
T ss_pred EEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccc---cEEEEEEEEcc------
Confidence 3444455555554 367999999999653 34789999999999999999999763 68999999984
Q ss_pred CCCccceEEEEEccccccc
Q 009797 494 HPKVLFQFYFIFYLVHRFK 512 (525)
Q Consensus 494 ~~d~~lG~v~I~l~~~~~~ 512 (525)
|+++|.+.|++.++...
T Consensus 78 --d~~~g~~~i~l~~l~~~ 94 (123)
T d1bdya_ 78 --EDPMSEVTVGVSVLAER 94 (123)
T ss_dssp --TEEEEEEEEEHHHHHHH
T ss_pred --ccccCccEEehhheeec
Confidence 68999999999988543
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=8.3e-12 Score=103.17 Aligned_cols=89 Identities=20% Similarity=0.235 Sum_probs=68.6
Q ss_pred eEEEEEEeeecCCCCCCCCcEEEEEECC------eEEEeee--ecCCCCCcccce-EEEE-ecCCCCCCeEEEEEEEccc
Q 009797 419 LLVVIVHEAQDVEGKHHTNPYARILFRG------EERKTKH--VKKNRDPRWEEE-FQFM-LEEPPTNDRLHVEVCSVSS 488 (525)
Q Consensus 419 ~L~V~v~~a~~L~~~~~~dPyv~v~l~~------~~~kT~v--~~~t~nP~wne~-f~f~-v~~~~~~~~l~i~V~d~~~ 488 (525)
.|.|+|++|++|+. ...||||++++.| ++++|++ ..++.||+|||. |.|. +..+ ....|.|.|||++
T Consensus 2 tl~V~Visaq~L~~-~~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~-~l~~L~f~V~D~d- 78 (122)
T d2zkmx2 2 TLSITVISGQFLSE-RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP-ELASLRVAVMEEG- 78 (122)
T ss_dssp EEEEEEEEEESCCS-SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG-GGCEEEEEEEETT-
T ss_pred EEEEEEEEeeCCCC-CCCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCC-cccEEEEEEECCC-
Confidence 48899999999986 4689999999943 3345544 357899999975 4443 4443 3358999999983
Q ss_pred CccCCCCCccceEEEEEccccccchhhhc
Q 009797 489 RIGLLHPKVLFQFYFIFYLVHRFKQECCR 517 (525)
Q Consensus 489 ~~~~~~~d~~lG~v~I~l~~~~~~~~~~~ 517 (525)
|++||++.|+++.++.|.++.+
T Consensus 79 -------~~~lG~~~ipl~~l~~GyR~vp 100 (122)
T d2zkmx2 79 -------NKFLGHRIIPINALNSGYHHLC 100 (122)
T ss_dssp -------TEEEEEEEEEGGGBCCEEEEEE
T ss_pred -------CCEEEEEEEEcccCcCCceEEE
Confidence 7899999999999998876644
|