Citrus Sinensis ID: 009805

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
Protein Sequence
MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISVKHIELYGCPELQGEIQGLSENIGRGQYPKGVVKLGQDKSHSFVKFLDEEVTGMENASVSHLVVAALTATVTFAAALTLLGGNKGDNEDGPNRGSAIFAKNAAFQAFIISDAIAMVLSLFAAFVHFILSLKLFRKFIFVFVFALFFTLIAMVLASSA
Secondary Structure (PSIPRED)
ccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHcccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccHEHHHHHHHHHHHHccccccccccccccccccccEHEccccHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MEPKLYeaatngeiepfngiakdnlrsivthnnkhtVLHVNIARQslknkegesvsTKFVEQILEICPslliqtnakgdsplhaaakcgRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMeagpnfpysanvngetpLYMAAARGSKKMVAEILEKCssaahdgpngkTALHAAVNSYAADVVEKLLAKKRHltrerddcgwtplhhsaylGLKDITALLLEfdgssalilDKDRKMTALLMAASQGHESLAGTIIAhypecydlvdnggwNVLHFLMVSLHESKLKRllkdplyksfideknemgntpLHILATLSARTCNEIVRQIGKGDTQAVNKKKISVKHIelygcpelqgeiqglsenigrgqypkgvvklgqdkshsFVKFLDEEVTGMENASVSHLVVAALTATVTFAAALTLlggnkgdnedgpnrgsaiFAKNAAFQAFIISDAIAMVLSLFAAFVHFILSLKLFRKFIFVFVFALFFTLIAMVLASSA
Flexible Loop (DISEMBL)
MEPKLYeaatngeiepfngIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLtrerddcgwtplhHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRqigkgdtqavnkKKISVKHIELYGCPELQGEIQGLSENIGRGQYPKGVVKLGQDKSHSFVKFLDEEVTGMENASVSHLVVAALTATVTFAAALTLLGGNKGDNEDGPNRGSAIFAKNAAFQAFIISDAIAMVLSLFAAFVHFILSLKLFRKFIFVFVFALFFTLIAMVLASSA
Low Complexity Region (SEG)
MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISVKHIELYGCPELQGEIQGLSENIGRGQYPKGVVKLGQDKSHSFVKFLDEEVTGMENASVSHlvvaaltatvtfaaaltllGGNKGDNEDGPNRGSAIFAKNAAFQAFIISDAIAMVLSLFAAFVHFILSlklfrkfifvfvfalfftliaMVLASSA
Disordered region (IsUnstruct)
***************PFNGIAKDNLRSIVTHNNKHTVLHVNIARQ*********VSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKC***********TALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISVKHIELYGCPELQGEIQGLSENIGRGQYPKGVVKLGQDKSHSFVKFLDEEVTGMENASVSHLVVAALTATVTFAAALTLLGG************SAIFAKNAAFQAFIISDAIAMVLSLFAAFVHFILSLKLFRKFIFVFVFALFFTLIAMVL****
Disordered Region (DISOPRED)
MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISVKHIELYGCPELQGEIQGLSENIGRGQYPKGVV*********************ENASVSHLVVAALTATVTFAAALTLLGGNKGDNEDGPNRGSAIFAKNAAFQAFIISDAIAMVLSLFAAFVHFILSLKLFRKFIFVFVFALFFTLIAMVLASSA
Disordered Region (DISEMBL)
********ATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSL**********KFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISVKHIELYGCPELQGEIQGLSENIGRGQYPKGVVKLGQDKSHSFVKFLDEEVTGMENASVSHLVVAALTATVTFAAALTLLGGNKGDNEDGPNRGSAIFAKNAAFQAFIISDAIAMVLSLFAAFVHFILSLKLFRKFIFVFVFALFFTLIAMVLASSA
Disordered Region (DISPRO)
*EPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISVKHIELYGCPELQGEIQGLSENIGRGQYPKGVVKLGQDKSHSFVKFLDEEVTGMENASVSHLVVAALTATVTFAAALTLLGGNKGDNEDGPNRGSAIFAKNAAFQAFIISDAIAMVLSLFAAFVHFILSLKLFRKFIFVFVFALFFTLIAMVLASSA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISVKHIELYGCPELQGEIQGLSENIGRGQYPKGVVKLGQDKSHSFVKFLDEEVTGMENASVSHLVVAALTATVTFAAALTLLGGNKGDNEDGPNRGSAIFAKNAAFQAFIISDAIAMVLSLFAAFVHFILSLKLFRKFIFVFVFALFFTLIAMVLASSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	525	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.685	0.687	0.275	4e-20
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.723	0.644	0.250	4e-17
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.563	0.150	0.280	2e-14
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.563	0.067	0.283	8e-14
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.460	0.129	0.275	2e-12
Q5F478	990	Serine/threonine-protein	no	no	0.567	0.301	0.277	3e-12
Q502K3	1071	Serine/threonine-protein	no	no	0.415	0.203	0.303	3e-12
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.542	0.151	0.286	5e-12
Q8N8A2	993	Serine/threonine-protein	no	no	0.632	0.334	0.237	4e-11
Q8UVC1	1021	Inversin OS=Danio rerio G	no	no	0.500	0.257	0.303	9e-11

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  100 bits (248), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 184/425 (43%), Gaps = 65/425 (15%)

Query: 70  LLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTA 129
           LL + N  G++ L+ AA+ G   +VK+L++ +       K  AK  +            A
Sbjct: 48  LLAEQNQSGETALYVAAEYGYTDMVKILMKHSDSVLAGTK--AKNGFD-----------A 94

Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK-CSSAAH 188
            H A + GNL  + +L+EA P   ++ + +  T L+ AA++G  ++V  +L+K    AA 
Sbjct: 95  FHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAI 154

Query: 189 DGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
              NGKTALH+A  +    +V+KL+ KK  +    D  G T LH +      +I  +L+E
Sbjct: 155 ARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLME 214

Query: 249 FDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFL-MVS 306
            DGS  LI   D K  T L +A  +    +  T++ +       V+  G   L       
Sbjct: 215 ADGS--LINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTG 272

Query: 307 LHESKLKRLLKDPLYKSFIDEKNEMGNTPLH-ILATLSARTCNEIVRQIGKGDTQAVNKK 365
           LHE         PL +  I  +N     P   +  + S+R   E V +IG          
Sbjct: 273 LHEIV-------PLLQK-IGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHE-------- 316

Query: 366 KISVKHIELYGCPELQGEIQGLSENIGRGQYPKGVVKLGQDKSHSFVKFLDEEVTGMENA 425
                H +L      + EIQG+++ +              +K H+          G+ NA
Sbjct: 317 ----VHTQLEQTGRTRREIQGIAKRV--------------NKMHT---------EGLNNA 349

Query: 426 SVSHLVVAALTATVTFAAALTLLGGNKGDNEDGP---NRGSAIFAKNAAFQAFIISDAIA 482
             S  +VA L ATV FAA   + G    D +D P   + G A  A    F  F++ D+ A
Sbjct: 350 INSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFA 409

Query: 483 MVLSL 487
           + +SL
Sbjct: 410 LFISL 414

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 181/447 (40%), Gaps = 67/447 (14%)

Query: 51  EGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKC 110
           EG     +F  ++ EI  S++ + N  G++ L  AA  G   VVK L++++ ++  A K 
Sbjct: 102 EGILSGEEFDAEVAEIRASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKK- 160

Query: 111 CAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAAR 170
                       N      LH A   G+   V++L++       +   +  TPL  AA R
Sbjct: 161 ------------NRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMR 208

Query: 171 GSKKMVAEILEKCSSAAH-DGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWT 229
           G  ++V ++L K  +       N K ALH A      +V++ LL+K   L R  D  G T
Sbjct: 209 GHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQT 268

Query: 230 PLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECY 289
            LH +      ++  LLL+ D   A+++  D+     L  A++   +    ++   P+  
Sbjct: 269 ALHMAVKGQSSEVVKLLLDAD--PAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTN 326

Query: 290 DLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNE 349
                        +   L  S+    +K+ L +S     NE+ N P   L +   +  N+
Sbjct: 327 ANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRANEL-NQPRDELRSTVTQIKND 385

Query: 350 IVRQIGKGDTQAVNKKKISVKHIELYGCPELQGEIQGLSENIGRGQYPKGVVKLGQDKSH 409
           +                    HI+L         +  +S         K + KL ++   
Sbjct: 386 V--------------------HIQLEQTKRTNKNVHNIS---------KELRKLHRE--- 413

Query: 410 SFVKFLDEEVTGMENASVSHLVVAALTATVTFAAALTLLGGNKGDNEDGPNRGSAIFAKN 469
                      G+ NA+ S  VVA L ATV FAA  T+ G   GDN D    GSA+    
Sbjct: 414 -----------GINNATNSVTVVAVLFATVAFAAIFTVPG---GDNND----GSAVVVGR 455

Query: 470 AAFQAFIISDAIAMVLSLFAAFVHFIL 496
           A+F+ F I +A+A+  SL    V   L
Sbjct: 456 ASFKIFFIFNALALFTSLAVVVVQITL 482

Arabidopsis thaliana (taxid: 3702)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 143/332 (43%), Gaps = 36/332 (10%)

Query: 67  CPSLLIQTNAKGD-------SPLHAAAKCGRPAVVKVLIEFAKKQPTAMK---------C 110
           C  LL+Q N   D       + LH AA CG   V KVL++  K  P A            
Sbjct: 332 CVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKVLLD-KKASPNAKALNGFTPLHIA 390

Query: 111 CAKTAWQMLGL----------TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNG 160
           C K   +++ L            E   T +H A   G+++ V  LM  G + P + NV G
Sbjct: 391 CKKNRIRVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGAS-PNTTNVRG 449

Query: 161 ETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLT 220
           ET L+MAA  G  ++V  +++  +       + +T LH +     AD+V++LL ++    
Sbjct: 450 ETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLL-QQGASP 508

Query: 221 RERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGT 280
                 G+TPLH +A  G +D+ A LL  D  ++L +   +  T L +AA  G   +A +
Sbjct: 509 NAATTSGYTPLHLAAREGHEDVAAFLL--DHGASLSITTKKGFTPLHVAAKYGKLEVA-S 565

Query: 281 IIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILA 340
           ++       D     G   LH +       K+  LL D         KN  G TPLHI A
Sbjct: 566 LLLQKSASPDAAGKSGLTPLH-VAAHYDNQKVALLLLDQGASPHAAAKN--GYTPLHIAA 622

Query: 341 TLSARTCNEIVRQIGKGDTQAVNKKKISVKHI 372
             +       + + G  D  AV ++ I+  H+
Sbjct: 623 KKNQMDIATSLLEYG-ADANAVTRQGIASVHL 653

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 79.0 bits (193), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 142/332 (42%), Gaps = 36/332 (10%)

Query: 67  CPSLLIQTNAKGD-------SPLHAAAKCGRPAVVKVLIEFAKKQPTAMK---------C 110
           C  LL+Q N   D       + LH AA CG   V KVL++  K  P A            
Sbjct: 349 CVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKVLLD-KKANPNAKALNGFTPLHIA 407

Query: 111 CAKTAWQMLGL----------TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNG 160
           C K   +++ L            E   T +H A   G+++ V  LM  G + P + NV G
Sbjct: 408 CKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGAS-PNTTNVRG 466

Query: 161 ETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLT 220
           ET L+MAA  G  ++V  +++  +       + +T LH +     AD+V++LL ++    
Sbjct: 467 ETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLL-QQGASP 525

Query: 221 RERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGT 280
                 G+TPLH SA  G +D+ A LL  D  ++L +   +  T L +AA  G   +A  
Sbjct: 526 NAATTSGYTPLHLSAREGHEDVAAFLL--DHGASLSITTKKGFTPLHVAAKYGKLEVANL 583

Query: 281 IIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILA 340
           ++       D     G   LH +       K+  LL D         KN  G TPLHI A
Sbjct: 584 LLQKS-ASPDAAGKSGLTPLH-VAAHYDNQKVALLLLDQGASPHAAAKN--GYTPLHIAA 639

Query: 341 TLSARTCNEIVRQIGKGDTQAVNKKKISVKHI 372
             +       + + G  D  AV ++ I+  H+
Sbjct: 640 KKNQMDIATTLLEYG-ADANAVTRQGIASVHL 670

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 124/298 (41%), Gaps = 56/298 (18%)

Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
           +N K ++PLH AA+ G   V K L++   K     K               ++ T LH A
Sbjct: 429 SNVKVETPLHMAARAGHTEVAKYLLQNKAKANAKAK---------------DDQTPLHCA 473

Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA------ 187
            + G+   VK+L+E G + P  A   G TPL+ AA  G       +LEK +S A      
Sbjct: 474 ARIGHTGMVKLLLENGAS-PNLATTAGHTPLHTAAREGHVDTALALLEKEASQACMTKKG 532

Query: 188 ---------------------HD------GPNGKTALHAAVNSYAADVVEKLLAKKRHLT 220
                                HD      G NG T LH AV+    D+V KLL  +    
Sbjct: 533 FTPLHVAAKYGKVRLAELLLEHDAHPNAAGKNGLTPLHVAVHHNNLDIV-KLLLPRGGSP 591

Query: 221 RERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGT 280
                 G+TPLH +A     ++   LL++ GS+    +  + +T L +AA +GH  +   
Sbjct: 592 HSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSAN--AESVQGVTPLHLAAQEGHTEMVAL 649

Query: 281 IIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           +++      +L +  G   LH +    H      L+K   +   +D    MG TPLH+
Sbjct: 650 LLSKQANG-NLGNKSGLTPLHLVSQEGHVPVADVLIK---HGVTVDATTRMGYTPLHV 703

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 142/339 (41%), Gaps = 41/339 (12%)

Query: 41  NIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAK---------GDSPLHAAAKCGRP 91
           N A  S+++KEG +            C  LL++ N+            SPLH AA  G  
Sbjct: 521 NDANPSIQDKEGYNTVHYAAAYGHRQCLELLLEKNSNMFEESDSSATKSPLHLAAYNGHH 580

Query: 92  AVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPN 151
             ++VL++               +   L + +E+  TAL  A   G+ + V+ L+  G +
Sbjct: 581 QALEVLLQ---------------SLVDLDIKDEKGRTALDLAAFKGHAECVEALISQGAS 625

Query: 152 FPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEK 211
                NV   TPL+ +   G    +  +LE   +       G+T L  AV     D V  
Sbjct: 626 VTVKDNVTKRTPLHASVINGHTPCLRLLLEVADNPDVTDAKGQTPLMLAVAYGHIDAVSL 685

Query: 212 LLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKD-RKMTALLMAA 270
           LL K+  +    D  G T LH     G ++   +LLE + S   IL KD R  T L  AA
Sbjct: 686 LLEKEASVD-AADLLGCTALHRGIMTGHEECVQMLLEKEVS---ILCKDARGRTPLHFAA 741

Query: 271 SQGHESLAGTI--IAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEK 328
           ++GH +    +  IA   E   L DN G+  LH+   + HE+ ++ LL+   ++ F    
Sbjct: 742 ARGHATWLSELLQIALSEEDCSLKDNQGYTPLHWACYNGHENCIEVLLEQKFFRKF---- 797

Query: 329 NEMGN--TPLHILATLSARTCNEIVRQIGKGDTQAVNKK 365
              GN  +PLH         C  ++  IG  D   VN K
Sbjct: 798 --YGNSFSPLHCAVINDHENCASML--IGAIDASIVNCK 832

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 109/237 (45%), Gaps = 19/237 (8%)

Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGE-----TPLYMAAARGSKKMVA 177
           ++E  T LH A   G++  + +L+ AG      ANVN +     TPL+ AAA  +++ V 
Sbjct: 38  DQERRTPLHAAAWLGDVHIMDLLISAG------ANVNAKDHVWLTPLHRAAASRNERAVG 91

Query: 178 EILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYL 237
            +L K +         +T LH A  + A   VE LL     L    D  G  PLHH+A  
Sbjct: 92  LLLRKGADVTARDKYWQTPLHIAAANRATRCVETLLPHVSSLNMA-DRTGRAPLHHAAQS 150

Query: 238 GLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGW 297
           G +++  LLL    + +    KDR+   +  AA  GH  +   +++   +     D  G+
Sbjct: 151 GYQEMVKLLLNKGANLSASDKKDRQ--PIHWAAYLGHLEVVKLLVSQGSD-KSCKDKRGY 207

Query: 298 NVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILA-TLSARTCNEIVRQ 353
             LH    S H   +K LL++    + IDE N  GNT LH+   T      NE+V +
Sbjct: 208 TPLHAAAASGHVDVVKYLLRN---GAEIDEPNAFGNTALHVACYTGQEAVANELVNR 261

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 73.2 bits (178), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 146/318 (45%), Gaps = 33/318 (10%)

Query: 77  KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC 136
           KG +PLH AAK G+  V ++L+E       A K          GLT       LH AV  
Sbjct: 535 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN---------GLT------PLHVAVHH 579

Query: 137 GNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTA 196
            NLD VK+L+  G   P+S   NG TPL++AA +   ++   +L+   SA  +   G T 
Sbjct: 580 NNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP 638

Query: 197 LHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALI 256
           LH A     A++V  LL+K+ +     +  G TPLH  A  G   +  +L++      ++
Sbjct: 639 LHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH----GVM 693

Query: 257 LDKDRKM--TALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKR 314
           +D   +M  T L +A+  G+  L   ++ H  +  +     G++ LH      H   +  
Sbjct: 694 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTL 752

Query: 315 LLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISVKHIEL 374
           LLK+    +  +E +  G TPL I   L   +  ++++ +    T   +   +S KH   
Sbjct: 753 LLKN---GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV----TDETSFVLVSDKHRMS 805

Query: 375 YGCPELQGEIQGLSENIG 392
           +  PE   EI  +SE+ G
Sbjct: 806 F--PETVDEILDVSEDEG 821

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 70.1 bits (170), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 154/404 (38%), Gaps = 72/404 (17%)

Query: 5   LYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHV---NIARQSLKNKEGESV------ 55
           L E   +G  E  +G  K  L  +  +N  H  L V   ++    +++++G +       
Sbjct: 551 LLERTNSGFEESDSGATKSPLH-LAAYNGHHQALEVLLQSLVDLDIRDEKGRTALDLAAF 609

Query: 56  --STKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFA-----------K 102
              T+ VE ++    S+ ++ N    +PLHA+   G    +++L+E A           K
Sbjct: 610 KGHTECVEALINQGASIFVKDNVTKRTPLHASVINGHTLCLRLLLEIADNPEAVDVKDAK 669

Query: 103 KQPTAMKCCAKTAWQMLGLTNEEEN----------TALHEAVQCGNLDAVKILMEAGPNF 152
            Q   M   A      + L  E+E           TALH  +  G+ + V++L+E   + 
Sbjct: 670 GQTPLMLAVAYGHIDAVSLLLEKEANVDTVDILGCTALHRGIMTGHEECVQMLLEQEVSI 729

Query: 153 PYSANVNGETPLYMAAARGSKKMVAEILEKCSS---AAHDGPNGKTALHAAVNSYAADVV 209
               +  G TPL+ AAARG    ++E+L+   S          G T LH A  +   + +
Sbjct: 730 -LCKDSRGRTPLHYAAARGHATWLSELLQMALSEEDCCFKDNQGYTPLHWACYNGNENCI 788

Query: 210 EKLLAKK---------------------------------RHLTRERDDCGWTPLHHSAY 236
           E LL +K                                   +   RDD G TPLH +A+
Sbjct: 789 EVLLEQKCFRKFIGNPFTPLHCAIINDHGNCASLLLGAIDSSIVSCRDDKGRTPLHAAAF 848

Query: 237 LGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGG 296
               +   LLL        + +  +  TAL+MAA  G       ++        + D   
Sbjct: 849 ADHVECLQLLLRHSAPVNAVDNSGK--TALMMAAENGQAGAVDILVNSAQADLTVKDKDL 906

Query: 297 WNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILA 340
              LH      HE     +L     +S I+EKN    TPLH+ A
Sbjct: 907 NTPLHLACSKGHEKCALLILDKIQDESLINEKNNALQTPLHVAA 950

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|Q8UVC1|INVS_DANRE Inversin OS=Danio rerio GN=invs PE=2 SV=1

 Score = 68.9 bits (167), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 128/290 (44%), Gaps = 27/290 (9%)

Query: 56  STKFVEQILEICP--SLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAK 113
           +T+ V  ILE  P  SLL   + +G +PLH A   G  AVV+VL        T+ + C+ 
Sbjct: 190 ATRTVRCILEAAPTESLLNWQDYEGRTPLHFAVADGNEAVVEVL--------TSYEGCSV 241

Query: 114 TAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSK 173
           TA+  L        T LH A   G+   V +L+E   +    ++  G TPL+  A     
Sbjct: 242 TAYDNLF------RTPLHWAALLGHAKIVHLLLERNKSGMIPSDSQGATPLHYGAQSNFA 295

Query: 174 KMVAEILEKCSSAAHDGPN--GKTALHAAVNSYAADVVEKLLAKKRHLT-RERDDCGWTP 230
             VA  L+  S    D P+  G+TA   A    + DV++ +L  K+ +     D  G T 
Sbjct: 296 DTVAVFLKHHS--VRDEPDLEGRTAFMWAAGKGSNDVIKIMLDLKKDIDINMTDKYGGTA 353

Query: 231 LHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYD 290
           LH +A  G      LLLE  G     LD   K T L  A   GH  +  T+I       D
Sbjct: 354 LHAAALSGHVSTVRLLLE-QGGMVDPLDV-MKHTPLFRACEMGHRDVILTLIKGGARV-D 410

Query: 291 LVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILA 340
           LVD  G + LH+  +  +    + L+++ +  +  D   + G TPL   A
Sbjct: 411 LVDIDGHSALHWAALGGNAEVCEVLMENGISPNLQD---QAGRTPLQCAA 457

Required for normal renal development and establishment of left-right axis. Probably acts as a molecular switch between different Wnt signaling pathways. Inhibits the canonical Wnt pathway by targeting cytoplasmic disheveled for degradation by the ubiquitin-proteasome. This suggests that it is required in renal development to oppose the repression of terminal differentiation of tubular epithelial cells by Wnt signaling.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
255585399	575	ankyrin repeat-containing protein, putat	0.948	0.866	0.408	9e-95
224127106	575	predicted protein [Populus trichocarpa]	0.908	0.829	0.405	1e-88
147772498	708	hypothetical protein VITISV_032148 [Viti	0.921	0.683	0.356	7e-71
225432914	596	PREDICTED: ankyrin repeat-containing pro	0.895	0.788	0.372	1e-68
359478091	637	PREDICTED: ankyrin-1-like [Vitis vinifer	0.954	0.786	0.349	5e-68
356510752	629	PREDICTED: ankyrin-2-like [Glycine max]	0.954	0.796	0.342	1e-67
224127079	394	predicted protein [Populus trichocarpa]	0.708	0.944	0.402	6e-67
296085927	611	unnamed protein product [Vitis vinifera]	0.950	0.816	0.365	2e-66
224127104	405	predicted protein [Populus trichocarpa]	0.691	0.896	0.409	6e-65
224127098	399	predicted protein [Populus trichocarpa]	0.695	0.914	0.406	8e-65

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 215/526 (40%), Positives = 311/526 (59%), Gaps = 28/526 (5%)

Query: 1   MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFV 60
           M   LY+AA +G+I+PF   A   L  +VT   K T+LH+N+A  S +       ST FV
Sbjct: 27  MSLDLYKAAEDGKIDPFKNFAGP-LDLLVT-PIKDTILHLNLASPSER-------STSFV 77

Query: 61  EQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLG 120
           ++ L++CP +L+Q NA GD+ LH AA+ G   +VK+LIE  + Q   ++   +   QML 
Sbjct: 78  KEALDMCPQILLQINADGDTLLHIAARYGHLDIVKLLIEHTRAQHQDLESAGEAVRQMLR 137

Query: 121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEIL 180
           +TN+ + TALHEA +  + D V++L+E  P+F +S+N  GETPLY+A+ RG  ++V  +L
Sbjct: 138 MTNKSKETALHEAARNDHPDLVELLIEQDPDFVHSSNDFGETPLYLASERGHLEVVVIML 197

Query: 181 EKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
           + C+S A+ GPNGKTALHAA       +V  +L KK  L  + D+ GWTPLH++AY+G  
Sbjct: 198 KACTSLAYGGPNGKTALHAAAMHRHGGIVHAILDKKTSLVNKADEMGWTPLHYAAYIGAS 257

Query: 241 DITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVL 300
            +   LL +D   A   DK R+ TAL +AA Q +      II   P+C  LVDN GWNV 
Sbjct: 258 RVVKQLLGYDKYVAYAADKARRRTALHLAACQANIKSMREIIFKCPDCCKLVDNRGWNVA 317

Query: 301 HFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQ 360
           H+ ++S  +  LK LL +P     ++EK+  GNTPLH+LA L +      +    KG   
Sbjct: 318 HYAVISKSDDALKILLANPSCIYLVNEKDAQGNTPLHLLAALQSHP--RSLMHHAKGHRF 375

Query: 361 AVNKKKISVKHIELYGCPELQGEIQGLSENIGRGQYPKGVVKLGQDKSHSFVKFLDEEVT 420
           AV ++        L   P  + EIQ    ++G G   + V+K             D+ + 
Sbjct: 376 AVYRQNFLCIKELLSRSPCRKKEIQEWMRDLGGGPLGQIVIK------------KDDFIL 423

Query: 421 GMENASVSHLVVAALTATVTFAAALTLLGGNKGDNEDGPNRGSAIFAKNAAFQAFIISDA 480
             E A  SH+VVAAL ATVTFAAA TL GG +  N+D  ++G AI  KN+AF+AF+I+DA
Sbjct: 424 TFERARDSHIVVAALVATVTFAAAFTLPGGYRS-NDDEKDQGVAILGKNSAFKAFLITDA 482

Query: 481 IAMVLSLFAAFVHFILSLKLFR-KFIFVFVFA---LFFTLIAMVLA 522
           IAMVLS  + F+HF L+L  +R +F+++ V+A   + F + AMV+A
Sbjct: 483 IAMVLSTSSLFIHFTLALHGYRQRFMWLMVYAFRCIVFAIEAMVVA 528

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 209/515 (40%), Positives = 290/515 (56%), Gaps = 38/515 (7%)

Query: 1   MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFV 60
           M+P L++AA  G I PF      +L  ++T  +++T+LHV      LKN+  E  ST FV
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQTCSLNQLLT-PDENTILHV-----YLKNQSSEPESTDFV 54

Query: 61  EQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLG 120
           ++ LE CP LL Q N +G++PLH  A+ G   VVKVLI+ AK  P   +     A  ML 
Sbjct: 55  DKFLERCPPLLFQANKRGETPLHLEARYGHSNVVKVLIDRAKALPADPESGVTKAKMMLR 114

Query: 121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARG-------SK 173
           +TNEE++TALHEA +      V+IL +  P F Y ANV+GETPLY+A + G         
Sbjct: 115 MTNEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAVSIGFLMFSEEHG 174

Query: 174 KMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHH 233
           K+V  IL  C S  + GP+G+TALHAA  +   +   K+L K++ LT+  D+ GW+PLH+
Sbjct: 175 KVVDGILGNCISVDYGGPDGRTALHAASMAANYETARKMLEKEKKLTKTTDENGWSPLHY 234

Query: 234 SAYLGLKD--ITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDL 291
           ++Y    +  I  +LLE+D S+A I + ++K TAL +AA QGH      I++  P C DL
Sbjct: 235 ASYCDWSNAPIVEVLLEYDASTASIAETEKKRTALHIAAIQGHVDAMKEIVSRCPACCDL 294

Query: 292 VDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIV 351
           VDN GWN LH+ + S      K  LK P       EK++ GNTP H++A L+        
Sbjct: 295 VDNRGWNALHYAVASKDTKVFKECLKIPELARLQTEKDDKGNTPFHLIAALAHEQPE--W 352

Query: 352 RQIGKGDTQ--------AVNKKKISVKHIELYGCPELQGEIQGLSENIGRGQYPKGVVKL 403
           R +   D+          +NK+K+SV  I      E+Q EI     + G G   +    L
Sbjct: 353 RYVLFNDSNGYRKWQIYGLNKRKLSVNDIYEEDFGEIQKEILESLNDGGSGPLGRRRKVL 412

Query: 404 GQDKSHSFVKFLDEEVTGMENASVSHLVVAALTATVTFAAALTLLGGNKGDNEDGPNRGS 463
            + ++        E    +  A  SHLVVAAL ATVTFAAA TL GG K D      RG+
Sbjct: 413 RRGRNK-------EGEDALSKARESHLVVAALIATVTFAAAFTLPGGYKSD------RGT 459

Query: 464 AIFAKNAAFQAFIISDAIAMVLSLFAAFVHFILSL 498
           AI AK AAF  F++SDA++MVLS+ A F+HF++SL
Sbjct: 460 AILAKKAAFIVFVVSDAMSMVLSISAVFIHFLISL 494

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772498|emb|CAN60780.1| hypothetical protein VITISV_032148 [Vitis vinifera]

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 193/542 (35%), Positives = 284/542 (52%), Gaps = 58/542 (10%)

Query: 1   MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFV 60
           M   +YEAA  G+++    I   + R +    NK+TVLH++I         G     + V
Sbjct: 133 MSRNVYEAAVEGKMDFLQNIVHLD-RELTP--NKNTVLHIHI--------RGGQAKKEHV 181

Query: 61  EQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAW---- 116
             ++  CPSLL +TN K ++PLH AA+ G   +V  L++  K  P A     ++      
Sbjct: 182 IAMVRQCPSLLQKTNNKDETPLHMAAREGLIQIVGALVDQVKA-PHANDADLESGRTLSV 240

Query: 117 -QMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKM 175
            +M+G+ N+EE+TALHEAV+   L+ V  L++A P F Y  N  GETPLYMA  RG  ++
Sbjct: 241 REMIGMRNKEEDTALHEAVRYRRLEVVNSLIDADPEFEYCRNRAGETPLYMAVKRGFDEL 300

Query: 176 VAEILEKCSSAAH-DGPNGKTALHAAV--NSYAADVVEKLLAKKRHLTRERDDCGWTPLH 232
           V  IL  C S AH  GPNG TALH A+  +     V  K+L K   L  + DD GWTPLH
Sbjct: 301 VDRILRTCRSPAHYQGPNGLTALHQAIICSDAKGKVGRKILEKMPDLATKTDDNGWTPLH 360

Query: 233 HSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLV 292
           ++AY G       LL+ D S+A I D D K T L +AAS+ H  +   +I++ P+C ++V
Sbjct: 361 YAAYFGKVSQAEALLKRDESAAYIADNDGK-TPLHIAASRNHAQIMKKLISYCPDCSEVV 419

Query: 293 DNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVR 352
           D    NVLH  + +     ++ +LK+    + I++K+  GNTPLH+ A+ S      ++ 
Sbjct: 420 DEKRRNVLHLAVQTRGREAMELILKNSWGSNLINDKDADGNTPLHMFAS-SLSFVPTLML 478

Query: 353 QIGKGDTQAVNKKKISVKHIELYGCPELQGEIQGLSENIGRGQYP--KGVVKLG------ 404
              + D  AVN K ++   I              LS N    Q P  KG+V+        
Sbjct: 479 SHPRVDKMAVNNKGLTAADI--------------LSSNT---QAPLLKGLVRFALKIYDP 521

Query: 405 --------QDKSHSFVKFLDEEVTGMENASVSHLVVAALTATVTFAAALTLLGGNKGDNE 456
                    D    + +   + V  ++ AS +HL+VAAL ATV +AA  TL GG KG  E
Sbjct: 522 TPARPSVTNDHGDXYDRGAKDRVXEIKKASKTHLIVAALIATVAYAAGFTLPGGYKG--E 579

Query: 457 DGPNRGSAIFAKNAAFQAFIISDAIAMVLSLFAAFVHFILSLKLFRKFIF-VFVFALFFT 515
            G +RG A+ A  A F AF I+D +AM+LS  A  +HF ++L   ++ ++ +F  A + T
Sbjct: 580 KGSHRGMAVLANKATFIAFYITDGMAMLLSTVAVVIHFFMTLHEDQEQLYRMFKLASYST 639

Query: 516 LI 517
           L+
Sbjct: 640 LV 641

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432914|ref|XP_002280197.1| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 190/510 (37%), Positives = 272/510 (53%), Gaps = 40/510 (7%)

Query: 1   MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFV 60
           M   +YEAA  G+++    I   + R +    NK+TVLH++I         G     + V
Sbjct: 31  MSRNVYEAAVEGKMDFLQNIVHLD-RELTP--NKNTVLHIHI--------RGGQAKKEHV 79

Query: 61  EQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAW---- 116
             ++  CPSLL +TN K ++PLH AA+ G   +V  L++  K  P A     ++      
Sbjct: 80  IAMVRQCPSLLQKTNNKDETPLHMAAREGLIQIVGALVDQVKA-PHANDADLESGRTLSV 138

Query: 117 -QMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKM 175
            +M+G+ N+EE+TALHEAV+   L+ V  L++A P F Y  N  GETPLYMA  RG  ++
Sbjct: 139 REMIGMRNKEEDTALHEAVRYRRLEVVNSLIDADPEFEYCRNRAGETPLYMAVKRGFDEL 198

Query: 176 VAEILEKCSSAAH-DGPNGKTALHAAV--NSYAADVVEKLLAKKRHLTRERDDCGWTPLH 232
           V  IL  C S AH  GPNG TALH A+  +    +V  K+L K   L  E DD GWTPLH
Sbjct: 199 VDRILRTCRSPAHYQGPNGLTALHQAIICSDAKGEVGRKILEKMPDLATETDDNGWTPLH 258

Query: 233 HSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLV 292
           ++AY G       LL+ D S+A I D D K T L +AAS+ H  +   +I++ P+C ++V
Sbjct: 259 YAAYFGKVSQAEALLKRDESAAYIADNDGK-TPLHIAASRNHAQIMKKLISYCPDCSEVV 317

Query: 293 DNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVR 352
           D    NVLH  + +     ++ +LK+    + I++K+  GNTPLH+ A  S  +   ++ 
Sbjct: 318 DEKRHNVLHLAVQTRGREAMELILKNSWGSNLINDKDVDGNTPLHMFAC-SLSSVPTLML 376

Query: 353 QIGKGDTQAVNKKKISVKHI--ELYGCPELQGEIQGLSENIGRGQYPKGVVKL--GQDKS 408
              + D  AVN K ++   I       P L+G +Q L+  I        V K   G+D+ 
Sbjct: 377 SHPRVDKMAVNNKGLTAADILSSNTQAPLLKGLVQ-LALKICNPTARPSVKKDHGGKDR- 434

Query: 409 HSFVKFLDEEVTGMENASVSHLVVAALTATVTFAAALTLLGGNKGDNEDGPNRGSAIFAK 468
                     V+ +  A  + LVVAAL ATV FAA   L GG KG  E G +RG A+ A 
Sbjct: 435 ----------VSEIRKAIKTQLVVAALIATVAFAAGFNLPGGFKG--EKGSHRGMAVLAN 482

Query: 469 NAAFQAFIISDAIAMVLSLFAAFVHFILSL 498
            A F AF I+D +AM+LS  A  +HF ++L
Sbjct: 483 KATFIAFYITDGMAMLLSTVAIVIHFFMAL 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478091|ref|XP_002270351.2| PREDICTED: ankyrin-1-like [Vitis vinifera]

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 199/569 (34%), Positives = 293/569 (51%), Gaps = 68/569 (11%)

Query: 1   MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFV 60
           M+  LYEAA  G I+    +++D+    +T  NK+TVLH+      L            V
Sbjct: 47  MDAALYEAAAYGRIDVLEQMSEDHFVVQLT-PNKNTVLHIAAQFGQLD----------CV 95

Query: 61  EQILEICPS--LLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQM 118
           + IL +  S  LL++ N KGD+PLH AA+ G   VVK LI+ AK+    ++        +
Sbjct: 96  QYILGLNSSSFLLLRPNLKGDTPLHHAAREGHLTVVKALIDAAKRLHQEIESGVGGDKAI 155

Query: 119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAE 178
           + +TNEEENTALHEAV+  + + VK L E  P F Y AN+ G T LYMAA RG + +V  
Sbjct: 156 MRMTNEEENTALHEAVRYHHSEVVKSLTEEDPEFIYGANITGYTLLYMAAERGFEDLVNL 215

Query: 179 ILEKCSSAAHDGPNGKTALHAAV---------------NSYAADVVEKLLAKKRHLTRER 223
           I+  C+S AH G  G+TALHAAV               + +  ++  +LL  K  LT+E 
Sbjct: 216 IIGTCTSPAHSGMMGRTALHAAVIRNDQGITYADPSLESRFPCEMTARLLEWKPDLTKEV 275

Query: 224 DDCGWTPLHHSAYLGLKDITALLLEF--DGSSALILDKDRKMTALLMAASQGHESLAGTI 281
           D+ GW+PLH +AYLG   I   LL+   D S   +  KD K TAL +AA++ H+ +   +
Sbjct: 276 DENGWSPLHCAAYLGYTAIVEQLLDKSPDKSVTYLGIKDSKKTALHIAANRHHQDIVKRL 335

Query: 282 IAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDP---LYKSFIDEKNEMGNTPLHI 338
           ++H P+C + VD+ G NVLH  ++S        + +D         I+EK+  G+TPLH+
Sbjct: 336 LSHSPDCCEQVDDKGNNVLHSAIMSERYYAPGNIFRDNSLLWVTGLINEKDAKGDTPLHL 395

Query: 339 LATLSARTCNEIVRQIGKGDTQAVNKKKISVKHIELYGCPELQGEI----------QGLS 388
           LA  S +  +  + +  + D  A+NK K++   I L       G I          +G  
Sbjct: 396 LA--SYQVYDPFLSENNRVDKMALNKDKLTALDI-LSRANVKSGNISREVLLKQLKEGEK 452

Query: 389 ENIGRGQYPKGVVK---------LGQDKSHSFVKFLDEE--VTGMENASVSHLVVAALTA 437
            ++G   + + + K            + S S  K + E+  ++ +     +HL+VAAL A
Sbjct: 453 VDVGPFSWQEAINKDSGSTGNGSADDNGSSSKSKDVGEDKIISNINRIGETHLIVAALVA 512

Query: 438 TVTFAAALTLLGGNKGDNEDGPNRGSAIFAKNAAFQAFIISDAIAMVLSLFAAFVHFILS 497
           TVTFAA  TL GG   D       G A   K AAF AFI++D IA+ LS+ A FV+F +S
Sbjct: 513 TVTFAAGFTLPGGYDSD-------GMATLTKKAAFIAFIVTDTIAVTLSVSAVFVYFFMS 565

Query: 498 LK----LFRKFIFVFVFALFFTLIAMVLA 522
           L        K +F   +   F + AM++A
Sbjct: 566 LHEDEGFLEKHLFTGFYLTVFGIGAMMVA 594

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510752|ref|XP_003524098.1| PREDICTED: ankyrin-2-like [Glycine max]

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 180/526 (34%), Positives = 288/526 (54%), Gaps = 25/526 (4%)

Query: 5   LYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQIL 64
           LY AA  G  + F  I   NL +++T N K+T+LH+++   + K+ +    S +FV QIL
Sbjct: 46  LYFAAVEGNFQEFINI--HNLENLLTPN-KNTILHIHLTSTTSKSGKTTPASAQFVTQIL 102

Query: 65  EICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAK-KQPTAMKCCAKTAWQMLGLTN 123
             C  L++  NAKG++ LH AA+ G   + K+L+E AK K    ++       + +  TN
Sbjct: 103 VKCGRLVLLPNAKGETLLHVAARYGHSNIAKLLLEHAKAKISPDIENGVGADQKFIRATN 162

Query: 124 EEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKC 183
           +E +TALHEAV+  +++ VK L+E  P++ Y AN   ETPLY+A+ R + ++V EIL+K 
Sbjct: 163 DELDTALHEAVRYDHIEVVKTLLEMDPDYSYYANNAKETPLYLASERQNLQVVREILKKV 222

Query: 184 SSAAHDGPNGKTALHAAVNSYAADVVEKLLAKK--RHLTRERDDCGWTPLHHSAYLGLKD 241
            S ++DGPN +TALHAAV +    +   LL  +  R   +  D  GW PLH++       
Sbjct: 223 KSPSYDGPNNQTALHAAVINQDIAMARDLLKNEHVRVAVKLADKKGWVPLHYAVKTRNAV 282

Query: 242 ITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLH 301
           +T LLL+ D ++A + D + + TAL +AA      +   II +YP+C ++VDN GWN LH
Sbjct: 283 LTKLLLKEDENTAYMQDNEGR-TALHIAADSDSRRIVKMIIKYYPDCSEIVDNKGWNALH 341

Query: 302 FLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQA 361
           + +    ++ ++R++++    +  +EK+  GNTPLH L   +   C+++V    + D  A
Sbjct: 342 YAVNGGKQNTIRRIMRNLYLSNLYNEKDVDGNTPLHYLPNSNLVACHKLVGH-PRVDKLA 400

Query: 362 VNKKKISVKHIELYGCPELQGEIQGLSENIGRGQYPKGVVKLGQDKSHSFVKFLDEEVTG 421
           VNKK  +V  +      +   E    +     GQ    +V L    +   ++   +   G
Sbjct: 401 VNKKDQTVLDVAYVKTEDPDPESDKRTR---EGQ----IVLLEMAGAKRSLRLDQKSKNG 453

Query: 422 M------ENASVSHLVVAALTATVTFAAALTLLGGNKGDNEDGPNRGSAIFAKNAAFQAF 475
           +      + A  +HL+VA L  TV+FAA +TL GG     +DG  +G+ +     +F+AF
Sbjct: 454 LNGLVFPKEAKQTHLLVATLITTVSFAAGITLPGGTI---QDGELKGTPLLGHKTSFKAF 510

Query: 476 IISDAIAMVLSLFAAFVHFILSL-KLFRKFIFVFVFALFFTLIAMV 520
           + S+ IAMVL+  AAF++    L K   K  +    AL FTL A+V
Sbjct: 511 MASNTIAMVLASTAAFINLFTPLTKTKWKDYYFSKAALIFTLTALV 556

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127079|ref|XP_002329386.1| predicted protein [Populus trichocarpa] gi|224127100|ref|XP_002329395.1| predicted protein [Populus trichocarpa] gi|222870436|gb|EEF07567.1| predicted protein [Populus trichocarpa] gi|222870445|gb|EEF07576.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 162/402 (40%), Positives = 228/402 (56%), Gaps = 30/402 (7%)

Query: 1   MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFV 60
           M+P L++AA  G I PF    + +L  ++T  +++T+LHV      LKN+  E  ST FV
Sbjct: 1   MDPVLFKAAEAGNIGPFENY-QTSLNQLLT-ADENTILHV-----YLKNQSSEPESTDFV 53

Query: 61  EQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLG 120
           ++ LE CP LL Q N +G++PLH AA+ G   VVKVLI+ AK  P   +     A  ML 
Sbjct: 54  DKFLERCPPLLFQANKRGETPLHLAARNGHSNVVKVLIDRAKALPADPESGVTKAKMMLR 113

Query: 121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARG-------SK 173
           +TNEE++TALHEA +      V+IL +  P F Y ANV+GETPLY+AA+ G         
Sbjct: 114 MTNEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAASIGFLMFSEEHG 173

Query: 174 KMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHH 233
           K+V  IL  C S  + GP+G+TALHAA  +   +   K+L K++ LT+  D+ GW+PLH+
Sbjct: 174 KVVDGILGNCISVDYGGPDGRTALHAASMAANYETARKMLEKEKKLTKTTDENGWSPLHY 233

Query: 234 SAYLGLKD--ITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDL 291
           ++Y    +  I  +LLE+D S+A I + ++K TAL +AA QGH      I++  P C DL
Sbjct: 234 ASYCDWSNAPIVEVLLEYDASAASIAETEKKRTALHIAAIQGHVDAMKEIVSRCPACCDL 293

Query: 292 VDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIV 351
           VDN GWN LH+ + S      K  LK P       EK++ GNTP H++A L+        
Sbjct: 294 VDNRGWNALHYAVASKDTKVFKECLKIPELARLQTEKDDKGNTPFHLIAALAHEQPE--W 351

Query: 352 RQIGKGDTQ--------AVNKKKISVKHIELYGCPELQGEIQ 385
           R +   D+          +NK+K+SV  I      E  GEIQ
Sbjct: 352 RYVLFNDSNGYRKWQIYGLNKRKLSVNDI----YEEDFGEIQ 389

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085927|emb|CBI31368.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 199/544 (36%), Positives = 299/544 (54%), Gaps = 45/544 (8%)

Query: 1   MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFV 60
           M+  LYEAA  G I+    +++ +    +T  NK+TVLH  IA Q      G+    +++
Sbjct: 47  MDAALYEAAAYGRIDVLEQMSEHHFVVQLT-PNKNTVLH--IAAQF-----GQLDCVQYI 98

Query: 61  EQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLG 120
             +     SLL++ N KGD+PLH AA+ G   VVK LI+ AK+    ++        ++ 
Sbjct: 99  LGLHSSS-SLLLKPNLKGDTPLHHAAREGHLTVVKALIDAAKRLHQEIESGVGGDKAIMR 157

Query: 121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEIL 180
           +TNEEENTALHEAV+  + + VK L E  P F Y AN+ G T LYMAA RG + +V  IL
Sbjct: 158 MTNEEENTALHEAVRYHHSEVVKSLTEEDPEFIYGANIAGYTLLYMAAERGFEDLVNLIL 217

Query: 181 EKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
             C+S ++ G  G+TALHAAV     ++  +LL  K  LT+E D+ GW+PLH +AYLG  
Sbjct: 218 GTCTSPSYSGMMGRTALHAAVIRNDQEMTARLLEWKPDLTKEVDENGWSPLHCAAYLGHT 277

Query: 241 DITALLLEF--DGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWN 298
            I   LL+   D S   +  KD K TAL +AA++ H  +   +++H P+C + VD+ G N
Sbjct: 278 AIVEQLLDKSPDKSVTYLGLKDSKKTALHIAANRDHRDIVKLLLSHSPDCCEQVDDKGNN 337

Query: 299 VLHFLMVSLHESKLKRLL-KDPLY--KSFIDEKNEMGNTPLHILATLSARTCNEIVRQIG 355
           VLH+ ++S        +L ++ L   +  I+EK+  G+TPLH+LA  S +  +  +    
Sbjct: 338 VLHYAIMSEQFLAAGGILGRNSLLSVRRLINEKDAKGDTPLHLLA--SYQVYDPFLSADN 395

Query: 356 KGDTQAVNKKKISVKHIELYGCPELQGEIQGLSENIGRG--QYPKGVV-----------K 402
           + D  A+NK K++   +++    +++   +   E I R   ++ K VV            
Sbjct: 396 RVDKMALNKDKLTA--LDIISRDKVKPR-RIFKEEIRRQWREWEKVVVGPFSWQEAINKD 452

Query: 403 LGQDKSHSFVKFLDEEVTGMENASVSHLVVAALTATVTFAAALTLLGGNKGDNEDGPNRG 462
            G  KS    K  DE ++  +    +HL+VAAL ATVTFAA  TL GG   DN      G
Sbjct: 453 SGSSKSEDVEK--DESISTTKREGETHLIVAALVATVTFAAGFTLPGG-YNDN------G 503

Query: 463 SAIFAKNAAFQAFIISDAIAMVLSLFAAFVHFILSL----KLFRKFIFVFVFALFFTLIA 518
            AI  K AAF+AFI++D +A++LS+ A FV+F +S+        K + +  F    ++ A
Sbjct: 504 MAILTKRAAFKAFIVTDTMAVILSVSAVFVYFFMSVHEDEDYLDKHLIMGFFLTVLSMGA 563

Query: 519 MVLA 522
           MV+A
Sbjct: 564 MVVA 567

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127104|ref|XP_002329397.1| predicted protein [Populus trichocarpa] gi|222870447|gb|EEF07578.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 159/388 (40%), Positives = 224/388 (57%), Gaps = 25/388 (6%)

Query: 1   MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFV 60
           M+P L++AA  G+I+PF    +  L  ++T  +++T+LHV +  QS      E   T FV
Sbjct: 13  MDPVLFKAAAEGDIDPFEKY-QTCLDQLLT-PDENTILHVYLGNQSR-----EPELTDFV 65

Query: 61  EQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLG 120
             ILE+CP LL Q N KG+ PLH AA  G   VVKVLI+ AK  PT  +     A +ML 
Sbjct: 66  VIILEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSESGVTEAKKMLR 125

Query: 121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAA--------RGS 172
           +TNEE++TALHEA +      V+IL +  P FPYSANV+GETPLY+AA+        RG 
Sbjct: 126 MTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREERG- 184

Query: 173 KKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLH 232
            K+V  IL  C S  + GPNG+TAL+AA+     +   KLL K++ LT+  D+ GW+PLH
Sbjct: 185 -KVVDGILGNCISVDYGGPNGRTALNAAIWVRDDETARKLLEKEKKLTQTTDENGWSPLH 243

Query: 233 HSA-YLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDL 291
           H+A Y     I  +LLE D S+A I + +++ TAL +AA QGH +    I++  P C +L
Sbjct: 244 HAACYDWSPRIVQVLLENDASAAYIAETEKRRTALHIAAIQGHVNAMKEIVSRCPACCEL 303

Query: 292 VDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSART----- 346
           VDN GWN LH+ + S         LK P       +K++ GNTP H++A L+ +      
Sbjct: 304 VDNRGWNALHYAVASKDRVAFVHCLKIPELARLGTKKDDKGNTPFHLIAALAHQQKQWQR 363

Query: 347 --CNEIVRQIGKGDTQAVNKKKISVKHI 372
              N+     G+     +NK+++SV  I
Sbjct: 364 VLFNDSYGYSGREIRCGLNKRQLSVDDI 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127098|ref|XP_002329394.1| predicted protein [Populus trichocarpa] gi|222870444|gb|EEF07575.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 157/386 (40%), Positives = 224/386 (58%), Gaps = 21/386 (5%)

Query: 1   MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFV 60
           M+P L++AA  G+I+PF    +  L  ++T  +++T+LHV +  QS      E   T FV
Sbjct: 7   MDPVLFKAAAEGDIDPFEKY-QTCLDQLLT-PDENTILHVYLGNQSR-----EPELTDFV 59

Query: 61  EQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLG 120
             ILE+CP LL Q N KG+ PLH AA  G   VVKVLI+ AK  PT  +     A +ML 
Sbjct: 60  VIILEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSESGVTEAKKMLR 119

Query: 121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSK------K 174
           +TNEE++TALHEA +      V+IL +  P FPYSANV+GETPLY+AA+  ++      K
Sbjct: 120 MTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREEGGK 179

Query: 175 MVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS 234
           +V  IL  C S  + GPNG+TAL+AA+     +   KLL K++ LT+  D+ GW+PLHH+
Sbjct: 180 VVDGILGNCISVDYGGPNGRTALNAAIWVRDDETARKLLEKEKKLTQTTDENGWSPLHHA 239

Query: 235 A-YLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVD 293
           A Y     I  +LLE D S+A I + +++ TAL +AA QGH +    I++  P C +LVD
Sbjct: 240 ACYDWSPRIVQVLLENDASAAYIAETEKRRTALHIAAIQGHVNAMKEIVSRCPACCELVD 299

Query: 294 NGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSART------- 346
           N GWN LH+ + S         LK P       +K++ GNTP H++A L+ +        
Sbjct: 300 NRGWNALHYAVASKDRVAFVHCLKIPELARLGTKKDDKGNTPFHLIAALAHQQKQWQRVL 359

Query: 347 CNEIVRQIGKGDTQAVNKKKISVKHI 372
            N+     G+     +NK+++SV  I
Sbjct: 360 FNDSYGYSGREIRCGLNKRQLSVDDI 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.68	0.556	0.277	2.9e-24
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.52	0.443	0.292	1.4e-22
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.615	0.477	0.280	8.8e-22
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.542	0.498	0.278	3.2e-18
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.556	0.420	0.264	3.4e-18
ZFIN|ZDB-GENE-091113-6	1923	si:ch211-263m18.3 "si:ch211-26	0.487	0.133	0.289	3.5e-16
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.580	0.446	0.275	4.7e-16
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.495	0.478	0.302	1e-15
UNIPROTKB|F1NJ80	1699	ANK3 "Uncharacterized protein"	0.518	0.160	0.297	1.4e-15
UNIPROTKB|F1NNX8	1737	ANK3 "Uncharacterized protein"	0.518	0.156	0.297	1.4e-15

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
 Identities = 107/385 (27%), Positives = 186/385 (48%)

Query:     1 MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNK--HTVLHVNIARQSLKNKEGESVSTK 58
             M P+++ A   G ++  + +  +N   +    N+     LH+  A   L+          
Sbjct:    36 MNPEIFSAMRAGNVKFLDKMKTNNNTPLACFRNETGDFTLHLAAAWGRLE---------- 85

Query:    59 FVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQM 118
              V++I+  CP LL++TN+K   PLHAAA  GR AVV+  +    +    +    +    +
Sbjct:    86 LVKRIVSECPCLLLETNSKDQIPLHAAAAAGRLAVVEAFVARVNEISDGLSEEERERVNL 145

Query:   119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAE 178
               + + + NTALH A++ G+L     L++A     + AN +G +PL+ A   GS  +V  
Sbjct:   146 YAMKDIDGNTALHLALKGGHLKTAACLVKANHLASFLANNHGVSPLFTAIIAGSLTLVEA 205

Query:   179 IL----EKCSSAAH-DGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHH 233
             ++    + C+ A+  +G   K+ +HAA+ +  +D+++ +L++   L  ERD+ G T L  
Sbjct:   206 MMYVPGQTCNLASKLEGR--KSLVHAALKAKNSDILDVILSEDPSLVNERDEEGRTCLSV 263

Query:   234 SAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVD 293
             +AY+G       LL    S+    D D     + MA  +G   +   ++   P+   L++
Sbjct:   264 AAYVGYYKGVVNLLHRSTSNVFECDDDGSYP-IHMAVEKGRVKIFLKLLKCCPDSQYLLN 322

Query:   294 NGGWNVLHFLMVSLHESK-LKRLLK--DPLYKSFIDEKNEMGNTPLHILATLS--ARTCN 348
               G N+LH    S      L +++K  D +    I E++  GNTPLH LATL+   RT N
Sbjct:   323 KQGQNILHIAAKSGKTGTYLLQVIKAYDLIKNDLIMEQDVDGNTPLH-LATLTWRPRTVN 381

Query:   349 EIVRQIGKGDTQAV-NKKKISVKHI 372
              I+ +   G+   + NK  +S   I
Sbjct:   382 -ILNKFTLGNHLHIRNKDGLSALDI 405

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
 Identities = 84/287 (29%), Positives = 147/287 (51%)

Query:    60 VEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQML 119
             VE I+   P+LL   N  G++ LH AA+ G   +V++L+ F  +  +        A+  +
Sbjct:    88 VEFIISTFPNLLQNVNLMGETTLHVAARAGSLNIVEILVRFITESSSY------DAF--I 139

Query:   120 GLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEI 179
                ++  +TALH A++  +++    L+    +  +  N +  +PLYMA   G  ++V ++
Sbjct:   140 AAKSKNGDTALHAALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYHELVLKM 199

Query:   180 LEKCSSAAHDGP--NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYL 237
             LE  SS +      +GK+ +HAA+ +   D++  +L +   L   R++ G T L + A +
Sbjct:   200 LESSSSPSILASMFSGKSVIHAAMKANRRDILGIVLRQDPGLIELRNEEGRTCLSYGASM 259

Query:   238 GLKD-ITALLLEFD--GSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDN 294
             G  + I  +L EFD   SS   +  D   T + MAA +GH  +    + H P+  +L++N
Sbjct:   260 GCYEGIRYILAEFDKAASSLCYVADDDGFTPIHMAAKEGHVRIIKEFLKHCPDSRELLNN 319

Query:   295 GGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILAT 341
                N+ H   ++     +K LLK    K  ++E++  GNTPLH LAT
Sbjct:   320 QCQNIFHVAAIAGKSKVVKYLLKLDEGKRMMNEQDINGNTPLH-LAT 365

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 8.8e-22, Sum P(2) = 8.8e-22
 Identities = 99/353 (28%), Positives = 157/353 (44%)

Query:     1 MEPKLYEAATNGEIEPFNGIAKD-N--LRSIVTHNNKHTVLHVNIARQSLKNKEGESVST 57
             M PK   A   G+      +  D N  L S+  H N  T+LH+  A        G    T
Sbjct:    97 MGPKTIAAVRAGDETYLRDMKFDVNIALSSVNDHGN--TMLHLAAAA-------GH---T 144

Query:    58 KFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQ 117
               V  IL   P LL+++N+ G+  LH AA  G  AVV+ L+ F K         AK  + 
Sbjct:   145 DLVCYILNAYPGLLMKSNSMGEVALHVAAGAGHLAVVEALVSFIKDISCNKPGVAKKIY- 203

Query:   118 MLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVA 177
                    ++N ALH +++  +L     L+ A  +  + AN +G +PLY+A   G   +  
Sbjct:   204 -FAKDRHQDN-ALHVSLKRKHLKVASCLVCAEQSLSFVANNDGVSPLYLAVEAGQADLAK 261

Query:   178 EILEKCSSAAHDGPN------GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPL 231
              + +  ++ +           G++ +H A+ +   D++  +L++   L   RD+ G T L
Sbjct:   262 TMWQHSNNGSSSTSTLASKIGGRSIVHGAMKARRKDILVAILSEDASLINFRDE-GRTCL 320

Query:   232 HHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDL 291
                A LG  +    LL+    S  + D D     + MA   G+  +   I+   P+  +L
Sbjct:   321 SFGASLGYYEGFCYLLDKALDSVYVSDDDGSFP-IHMAVKYGYVKILKAILKRCPDALEL 379

Query:   292 VDNGGWNVLHFLMVSLHESKLKRLL---KDPLYKSFIDEKNEMGNTPLHILAT 341
             +D    NVLH    +     LK +L   KD   +  I+E++  GNTPLH LAT
Sbjct:   380 LDRENQNVLHVAAKNGKIEVLKFILRCCKDKNKEKLINEEDANGNTPLH-LAT 431

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
 Identities = 83/298 (27%), Positives = 135/298 (45%)

Query:    58 KFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQ 117
             + V+ I+  CP L+++ N K   PLH AA  G  A+V+ L+         +    +    
Sbjct:   129 ELVKNIISECPCLVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAEEDRERLN 188

Query:   118 MLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVA 177
                L ++  NTALH A++   ++    L+    N  +  N  G + LYMA   G   +V 
Sbjct:   189 PYVLRDKYGNTALHLAIEGRYMEMAASLVNENQNASFLENNEGISSLYMAVEAGDVTLVK 248

Query:   178 EILEKCSSAAHDGPNG---------KTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGW 228
             EIL+   +   +G N          K  +H A+N+ +  V++ +L +   L  ERD+ G 
Sbjct:   249 EILKTAGNNDLEGRNSNLDSKLEGRKHLVHVALNARSIGVLDVILNEYPSLEDERDEEGR 308

Query:   229 TPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPEC 288
             T L  +A +G       LL+    +  + D+D     +  AA  GH  +   I+   P  
Sbjct:   309 TCLSFAASIGFYKGVCNLLDRSTKNVYVCDEDGSFP-IHTAAENGHIRIVKEILKRCPHS 367

Query:   289 YDLVDNGGWNVLHFLMVSLHESKL-KRLLKDPLYKSFIDEKNEMGNTPLHILATLSAR 345
               +++  G NVLH +   + E  L K L++    K     ++  GNTPLH LA L+ R
Sbjct:   368 KHMLNKLGQNVLH-IAAKIGEHNLVKSLMRSDDTKHLGVGQDVDGNTPLH-LAVLNWR 423

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
 Identities = 85/321 (26%), Positives = 149/321 (46%)

Query:    40 VNIARQSLKNKEGESV--------STKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRP 91
             +++AR  +K+  G+S+          + V++I+  CP LL++ N+ G +PLH AA  G  
Sbjct:   122 ISVAR--IKSNTGDSILHLAVTWGHLELVKEIVCECPRLLLEQNSSGQTPLHVAAHSGHT 179

Query:    92 AVVKVLIEFAKKQPTAMKCCAKTAWQM--LGLTNEEENTALHEAVQCGNLDAVKILMEAG 149
              +V+  +       ++ + C + + +M    L +++ NTAL+ A++    +    L+ A 
Sbjct:   180 TIVEAFVALVTF--SSARLCNEESERMNPYVLKDKDGNTALYYAIEGRYFEMAVCLVNAN 237

Query:   150 PNFPYSANVNGETPLYMAAARGSKKMVAEILE---------KCSSAAHDGPNGKTALHAA 200
              + P+  N  G + L++A   G   +V  IL+         K S+        K+  H A
Sbjct:   238 QDAPFLGNKYGVSSLFVAINTGDVSLVKAILKIIGNKDLKGKKSNLESKLQGQKSLAHVA 297

Query:   201 -VNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDK 259
              V    A V++ +L +   L  ERD  GWT L  +A++G  +    LLE       + D+
Sbjct:   298 LVTQSIAGVLDVILDEYPSLMDERDINGWTCLSLAAHIGYYEGVCNLLERSTKGVYVCDQ 357

Query:   260 DRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVS--LHESKLKRLLK 317
             D     +  AA +GHE++    I   P    L++  G NVLH    +     S +  + K
Sbjct:   358 DGSFP-IHTAAEKGHENIVEEFIKRCPGSKHLLNKLGQNVLHIAAKNGKFWISNMLIINK 416

Query:   318 DPLYKSFIDEKNEMGNTPLHI 338
             D  +     + +  GNTPLH+
Sbjct:   417 DTEHLGVGQDVD--GNTPLHL 435

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-091113-6 si:ch211-263m18.3 "si:ch211-263m18.3" [Danio rerio (taxid:7955)]

 Score = 238 (88.8 bits), Expect = 3.5e-16, P = 3.5e-16
 Identities = 83/287 (28%), Positives = 128/287 (44%)

Query:    72 IQTNAKGD-SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNE------ 124
             +   AK D +PLH AA+ G   +VK+L+E  K  P +      T   +            
Sbjct:   496 VDAKAKDDQTPLHCAARMGHKELVKLLMEH-KANPDSATTAGHTPLHIAAREGHAQTTRI 554

Query:   125 --EEN-----------TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARG 171
               +EN           T LH A + G +D V++L+E G N P +A  NG TPL++A    
Sbjct:   555 LLDENAQQTKMTKKGFTPLHVACKYGKVDVVELLLERGAN-PNAAGKNGLTPLHVAVHHN 613

Query:   172 SKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPL 231
             +  +V  ++ K  S      NG TALH A      +V   LL    +   E    G TPL
Sbjct:   614 NLDVVKLLVSKGGSPHSTARNGYTALHIAAKQNQLEVASSLLQYGANANSESLQ-GITPL 672

Query:   232 HHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDL 291
             H ++  G  D+ ALL+    +  + L     +T L + A +GH  +A  ++      Y  
Sbjct:   673 HLASQEGQPDMVALLISKQAN--VNLGNKNGLTPLHLVAQEGHVGIADMLVKQGASVY-A 729

Query:   292 VDNGGWNVLHFLMVSLHESKLKRLLKDPLYK-SFIDEKNEMGNTPLH 337
                 G+  LH   V+ H   +K ++K  L + + ++ K  +G TPLH
Sbjct:   730 ASRMGYTPLH---VACHYGNIK-MVKFLLQQQAHVNSKTRLGYTPLH 772

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
 Identities = 88/319 (27%), Positives = 140/319 (43%)

Query:    47 LKNKEGESV----ST----KFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLI 98
             LKN  G+SV    +T    + V+ I+  C  LL+++N+K   PLH AA+ G  AVV+ L+
Sbjct:   114 LKNDRGDSVLHLAATWSHLELVKNIVSECSCLLMESNSKDQLPLHVAARMGHLAVVEDLV 173

Query:    99 EFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANV 158
                      +    +       L +   +TAL+ A++    +    L+ A     + A  
Sbjct:   174 ASVTFFSARLAEEDREILNPYLLKDINGDTALNLALKGHYTEVALCLVNANRQASFLACK 233

Query:   159 NGETPLYMAAARGSKKMVAEILEKCSSAAHD-GPNGKTAL-HAAVNSYAADVVEKLLAKK 216
             +G +PLY+A       +V  +L        +    G+  L HAA+NS + D+++ +L + 
Sbjct:   234 DGISPLYLAVEAKDASLVKAMLGNDGPQRKNLNLEGRKYLAHAALNSLSTDILDVILNEY 293

Query:   217 RHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHES 276
               L  ERD+ G T L   A +G       LL        + D D     + +A  +G   
Sbjct:   294 PSLVDERDEEGRTCLSFGASIGYHKGVCNLLNRSRKGVFVCDDDGSYP-IHLAVEKGRIK 352

Query:   277 LAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPL 336
             +   I    P    L++  G N+LH    S     L+ L          +EK+  GNTPL
Sbjct:   353 VVKEICKRCPYSKLLLNKKGQNLLHIAAESGKFRILRHLTAHEQINHLANEKDVDGNTPL 412

Query:   337 HILATLSARTCNEIVRQIG 355
             H LAT+  R     VR++G
Sbjct:   413 H-LATIYWRP--RAVRELG 428

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 82/271 (30%), Positives = 123/271 (45%)

Query:   118 MLGLTNEEENTALHEAVQCGNLD-AVKILM---EAGPN-FPYSANVNGETPLYMAAARGS 172
             M  LT + ++T LH AV+ GN D  V+IL    E+  N      N +GET LY+AA  G 
Sbjct:    19 MKQLTGKRDDTLLHSAVRHGNKDRVVEILTKTRESELNQLLGKQNQSGETALYVAAEYGD 78

Query:   173 KKMVAEILEKCSSAAHD--GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTP 230
              ++V E++     A  +    NG  A H A      DV++ L      L    D    T 
Sbjct:    79 VEIVKEMINCYDLALVEIKARNGFDAFHIAAKQGDLDVLKVLAEAHSELAMTVDLSNTTA 138

Query:   231 LHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYD 290
             LH +A  G  ++   LLE  GSS   + K    TAL  A+  GH  +   ++A  P    
Sbjct:   139 LHTAATQGHTEVVNFLLEL-GSSLAGIAKSNGKTALHSASRNGHVKVIKALLASEPAIAI 197

Query:   291 LVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEI 350
              +D  G   LH  +   +   ++ L+K    +S I+  +  GNT LHI A        ++
Sbjct:   198 RMDKKGQTALHMAVKGTNVEVVEELIKAD--RSSINIADTKGNTALHIAARKGRSQIVKL 255

Query:   351 VRQIGKGDTQAVNKK-KISVKHIELYGCPEL 380
             +      DT+AVN+  + ++   E  G PE+
Sbjct:   256 LLANNMTDTKAVNRSGETALDTAEKIGNPEV 286

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NJ80 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 232 (86.7 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 90/303 (29%), Positives = 139/303 (45%)

Query:    75 NAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
             NAK   G +PLH A K  R  V+++L+    K   +++   ++     GLT       +H
Sbjct:   352 NAKALNGFTPLHIACKKNRIKVMELLL----KHGASIQAVTES-----GLT------PIH 396

Query:   132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP 191
              A   G+++ V  LM  G + P + NV GET L+MAA  G  ++V  +++  +       
Sbjct:   397 VAAFMGHVNIVSQLMHHGAS-PNTTNVRGETALHMAARAGQTEVVRYLVQNGAQVEAKAK 455

Query:   192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG 251
             + +T LH +     AD+V++LL +           G+TPLH SA  G +D+ ++LLE   
Sbjct:   456 DDQTPLHISARLGKADIVQQLLQQGAS-PNAATTSGYTPLHLSAREGHEDVASVLLEHGA 514

Query:   252 SSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLH--E 309
             S A+I  K    T L +AA  G   +A  ++       D     G   LH   V+ H   
Sbjct:   515 SLAIITKKG--FTPLHVAAKYGKIEVANLLLQKNASP-DASGKSGLTPLH---VAAHYDN 568

Query:   310 SKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISV 369
              K+  LL D         KN  G TPLHI A  +       + + G  D  AV ++ I+ 
Sbjct:   569 QKVALLLLDQGASPHASAKN--GYTPLHIAAKKNQMDIATTLLEYG-ADANAVTRQGIAP 625

Query:   370 KHI 372
              H+
Sbjct:   626 VHL 628

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX8 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 232 (86.7 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 90/303 (29%), Positives = 139/303 (45%)

Query:    75 NAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
             NAK   G +PLH A K  R  V+++L+    K   +++   ++     GLT       +H
Sbjct:   352 NAKALNGFTPLHIACKKNRIKVMELLL----KHGASIQAVTES-----GLT------PIH 396

Query:   132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP 191
              A   G+++ V  LM  G + P + NV GET L+MAA  G  ++V  +++  +       
Sbjct:   397 VAAFMGHVNIVSQLMHHGAS-PNTTNVRGETALHMAARAGQTEVVRYLVQNGAQVEAKAK 455

Query:   192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG 251
             + +T LH +     AD+V++LL +           G+TPLH SA  G +D+ ++LLE   
Sbjct:   456 DDQTPLHISARLGKADIVQQLLQQGAS-PNAATTSGYTPLHLSAREGHEDVASVLLEHGA 514

Query:   252 SSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLH--E 309
             S A+I  K    T L +AA  G   +A  ++       D     G   LH   V+ H   
Sbjct:   515 SLAIITKKG--FTPLHVAAKYGKIEVANLLLQKNASP-DASGKSGLTPLH---VAAHYDN 568

Query:   310 SKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISV 369
              K+  LL D         KN  G TPLHI A  +       + + G  D  AV ++ I+ 
Sbjct:   569 QKVALLLLDQGASPHASAKN--GYTPLHIAAKKNQMDIATTLLEYG-ADANAVTRQGIAP 625

Query:   370 KHI 372
              H+
Sbjct:   626 VHL 628

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_120000037 hypothetical protein (575 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	525
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-23
pfam13962	114	pfam13962, PGG, Domain of unknown function	3e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	5e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.001
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.002
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.003
pfam14126	111	pfam14126, DUF4293, Domain of unknown function (DU	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 94.4 bits (235), Expect = 3e-23
 Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 2/126 (1%)

Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE 181
            +E+  T LH A   G+L+ VK+L+E G +   + + +G TPL++AA  G  ++V  +LE
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 182 KCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKD 241
           K +       +G T LH A  +   DVV+ LL K       RD  G TPLH +A  G  +
Sbjct: 62  KGADVNARDKDGNTPLHLAARNGNLDVVKLLL-KHGADVNARDKDGRTPLHLAAKNGHLE 120

Query: 242 ITALLL 247
           +  LLL
Sbjct: 121 VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 91.4 bits (228), Expect = 3e-22
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 421 GMENASVSHLVVAALTATVTFAAALTLLGGNKGDNEDGPNRGSAIFAKN-AAFQAFIISD 479
            +E    S LVVA L ATVTFAA  T  GG   D+  G + G+ I A     F+AF +S+
Sbjct: 3   WLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDD-GGHHAGTPILAGKPRRFKAFFVSN 61

Query: 480 AIAMVLSLFAAFVHFILSLKLFRKFIFVFV--FALFFTLIAMVLA 522
            IA V SL A  +   +     R+   +      L+ +L+++++A
Sbjct: 62  TIAFVASLVAVILLLYIVPSFSRRLPRLLALLTLLWLSLLSLMVA 106

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 87.8 bits (218), Expect = 9e-21
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 16/141 (11%)

Query: 73  QTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHE 132
             +  G +PLH AA  G   VVK+L+E                   +   + +  T LH 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGA---------------DVNAKDNDGRTPLHL 46

Query: 133 AVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPN 192
           A + G+L+ VK+L+E G +   + + +G TPL++AA  G+  +V  +L+  +       +
Sbjct: 47  AAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD 105

Query: 193 GKTALHAAVNSYAADVVEKLL 213
           G+T LH A  +   +VV+ LL
Sbjct: 106 GRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 82.8 bits (205), Expect = 5e-19
 Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 3/126 (2%)

Query: 157 NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKK 216
           + +G TPL++AA+ G  ++V  +LE  +       +G+T LH A  +   ++V+ LL K 
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 217 RHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHES 276
             +   RD  G TPLH +A  G  D+  LLL+  G+     DKD + T L +AA  GH  
Sbjct: 64  ADV-NARDKDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDKDGR-TPLHLAAKNGHLE 120

Query: 277 LAGTII 282
           +   ++
Sbjct: 121 VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 222 ERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTI 281
            RD+ G TPLH +A  G  ++  LLLE  G+     D D   T L +AA  GH  +   +
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDG-RTPLHLAAKNGHLEIVKLL 59

Query: 282 IAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           +       +  D  G   LH    + +   +K LLK   + + ++ +++ G TPLH+
Sbjct: 60  LEKGA-DVNARDKDGNTPLHLAARNGNLDVVKLLLK---HGADVNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           LH A + GNL+ VK+L+E G +         +T L++AA  G+ ++V  +LE  +     
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 190 GPNGKTALHAAVNSYAADVVEKLLAK 215
             +G TALH A  +   ++V+ LL  
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 18/101 (17%)

Query: 82  LHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDA 141
           LH AAK G   +VK+L+E            A        +   + +TALH A + GNL+ 
Sbjct: 1   LHLAAKNGNLELVKLLLE----------KGAD-------VNLGDTDTALHLAARNGNLEI 43

Query: 142 VKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK 182
           VK+L+E G +   + + +G T L++AA  G+ ++V  +LE 
Sbjct: 44  VKLLLEHGAD-VNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 18/97 (18%)

Query: 56  STKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTA 115
           + + V+ +LE    + +      D+ LH AA+ G   +VK+L+E                
Sbjct: 9   NLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHGAD------------ 53

Query: 116 WQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNF 152
              +   +++ NTALH A + GNL+ VK+L+E G + 
Sbjct: 54  ---VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 20/174 (11%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV 134
           +A+  + LH A K G    +K+L E+                  + + ++     +H A+
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEYGAD---------------VNIEDDNGCYPIHIAI 165

Query: 135 QCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGK 194
           +    D +K+L+E G  +    + NGE+PL+ AA  G    +  +++  +   +   NG 
Sbjct: 166 KHNFFDIIKLLLEKGA-YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGF 224

Query: 195 TALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS-AYLGLKDITALLL 247
           T LH A+  +    +E LL     +  ++D  G TPLHH+       DI  +LL
Sbjct: 225 TPLHNAI-IHNRSAIE-LLINNASIN-DQDIDGSTPLHHAINPPCDIDIIDILL 275

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 57/248 (22%), Positives = 88/248 (35%), Gaps = 79/248 (31%)

Query: 127 NTALHEAVQCGN---LDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSK----- 173
            T LH  +   +    D V++L+EAG      A+VN     G TPL++     +      
Sbjct: 48  KTPLHLYLHYSSEKVKDIVRLLLEAG------ADVNAPERCGFTPLHLYLYNATTLDVIK 101

Query: 174 ---KMVAEILEKCSSAAHDGPNGKTALHA--AVNSYAADVVEKLLAKKRHLTRERDDCGW 228
              K  A++  K          G+T LH   +  +    V+  LL K   +    D  G 
Sbjct: 102 LLIKAGADVNAKDK-------VGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGM 153

Query: 229 TPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPEC 288
           TPL     L  ++    LL       L++D    + A                       
Sbjct: 154 TPLA--VLLKSRNANVELLR------LLIDAGADVYA----------------------- 182

Query: 289 YDLVDNGGWNVLHFLMVSLHES-----KLKRLLKDPLYKSFIDEKNEMGNTPLHILATLS 343
              VD+   ++LH  + S         +L R   DP         + +GNTPLH +AT S
Sbjct: 183 ---VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA------ATDMLGNTPLHSMATGS 233

Query: 344 ARTCNEIV 351
             +C   +
Sbjct: 234 --SCKRSL 239

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 30/187 (16%)

Query: 81  PLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLD 140
           PL+ A +     VVK+L++             K     L   +  +             +
Sbjct: 38  PLYLAKEARNIDVVKILLD--NGADINSS--TKNNSTPLHYLSNIKYNLTD------VKE 87

Query: 141 AVKILMEAGPNFPYSANVNGETPLYMAAAR--GSKKMVAEILEKCSSAAHDGPNGKTALH 198
            VK+L+E G N   + + NG TPL  A ++   S  +V  +L+  ++      +G+  LH
Sbjct: 88  IVKLLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLH 146

Query: 199 AAVNSYAAD--VVEKLLAKKRHL---------------TRERDDCGWTPLHHSAYLGLKD 241
             + S   D  +++ L+ K   +                  +D  G+TPLH++ Y    +
Sbjct: 147 LYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPE 206

Query: 242 ITALLLE 248
               LL+
Sbjct: 207 FVKYLLD 213

Length = 422

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 27/218 (12%)

Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAAR----GSKKMVAEIL 180
           LH+AV+  NLD VK L+  G       NVN       TPL++        G K+M+  I 
Sbjct: 41  LHQAVEARNLDVVKSLLTRG------HNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSIN 94

Query: 181 EKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
            KCS           A+  A N+   ++ + +L  +    +  D            +  +
Sbjct: 95  -KCSVF-----YTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAE 148

Query: 241 DITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVL 300
            IT LLL + G+   + D+ +  TAL  A     + L   ++++     ++ D    + L
Sbjct: 149 -ITKLLLSY-GADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPL 205

Query: 301 HFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           H  +   ++  +  LL+     +  D +++ GNTPLHI
Sbjct: 206 HHAVKHYNKPIVHILLE---NGASTDARDKCGNTPLHI 240

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 6/152 (3%)

Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE 181
              + NTALH A +  +    ++L+  G N     +    +PL+ A    +K +V  +LE
Sbjct: 164 DRHKGNTALHYATENKDQRLTELLLSYGAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLE 222

Query: 182 KCSSAAHDGPNGKTALHAAVNSYAA-DVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
             +S       G T LH +V      D+++ LL     +  +    G T LH S  +  +
Sbjct: 223 NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSE 280

Query: 241 DITALLLEFDGSSALILDKDRKMTALLMAASQ 272
               LLLE+ G+    L+   K+T L  A  Q
Sbjct: 281 RKLKLLLEY-GADINSLNSY-KLTPLSSAVKQ 310

Length = 477

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 23/175 (13%)

Query: 55  VSTKFVEQILEIC-PSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAK 113
            +    E +L++     L   +  G  PLH+AA  G   +VK+L+  +     A      
Sbjct: 49  PAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLA-SGADVNAK----- 102

Query: 114 TAWQMLGLTNEEENTALHEAVQCGNL-----DAVKILMEAGPNF--PYSANVNGETPLYM 166
                    + + +T LH A   GN      +  K+L+EAG +       + +G TPL+ 
Sbjct: 103 ---------DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHW 153

Query: 167 AAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTR 221
           AA  G   +V  +LE  +        G TAL  A  +   ++V+ LL K  HL+ 
Sbjct: 154 AALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSL 208

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 9/167 (5%)

Query: 125 EENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCS 184
           + N  L  A+      +  +L         + +++G  PL+ AA++G  K+V  +L   +
Sbjct: 38  KLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGA 97

Query: 185 SAAHDGPNGKTALHAAVNS-----YAADVVEKLLAKKRHL--TRERDDCGWTPLHHSAYL 237
                  +G T LH A  +        +V + LL     L     RD+ G TPLH +A  
Sbjct: 98  DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALN 157

Query: 238 GLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAH 284
           G  DI  LLLE    +         +TAL  AA  G   L   ++  
Sbjct: 158 GDADIVELLLE--AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK 202

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 126 ENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVA 177
             TALH+A   G L+ VK L+E G +   + + +G T L++AA  G+ +++ 
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 11/207 (5%)

Query: 133 AVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK---CSSAAHD 189
            +    LD + + +    +   S   + +  LY+  A      ++E+L K       A  
Sbjct: 10  LINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAAR 69

Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY-----LGLKDITA 244
             +G+  LH+A +     +V+ LLA    +   +D  G TPLH +A       G  ++  
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGADVN-AKDADGDTPLHLAALNGNPPEGNIEVAK 128

Query: 245 LLLEFDGSSALILDKDRKM-TALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFL 303
           LLLE      +   +D    T L  AA  G   +   ++    +  +  ++ G   L   
Sbjct: 129 LLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPA 187

Query: 304 MVSLHESKLKRLLKDPLYKSFIDEKNE 330
             +     +K LL   L+ S +    E
Sbjct: 188 AKNGRIELVKLLLDKGLHLSLLKFNLE 214

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 11/124 (8%)

Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANV---NGETPLYMAAARGSKKMVAEILEKCSSA 186
           LH+AV+ G++ AV+ L++ G    ++ +V   +G TPL++A       ++  ++ +   A
Sbjct: 72  LHDAVEEGDVKAVEELLDLGK---FADDVFYKDGMTPLHLATILKKLDIMKLLIAR--GA 126

Query: 187 AHDGPNGK--TALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITA 244
             D PN    + LH AV       +E LL   +      D CG TPL  +   G   I  
Sbjct: 127 DPDIPNTDKFSPLHLAVMMGDIKGIE-LLIDHKACLDIEDCCGCTPLIIAMAKGDIAICK 185

Query: 245 LLLE 248
           +LL+
Sbjct: 186 MLLD 189

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 15/68 (22%)

Query: 78  GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
           G + LH AA  GR  +VK L+E                      T+E+ NTALH A + G
Sbjct: 1   GRTALHKAAISGRLELVKYLLEK-GVDINR--------------TDEDGNTALHIAAENG 45

Query: 138 NLDAVKIL 145
           NL+ +K+L
Sbjct: 46  NLEVLKLL 53

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 197 LHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALI 256
           LH A  +   ++V+ LL K   +     D   T LH +A  G  +I  LLLE     A +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLEHG---ADV 54

Query: 257 LDKDR-KMTALLMAASQGHESLAGTIIAHYPE 287
             KD+   TAL +AA  G+  +   ++ H  +
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 13/25 (52%), Positives = 19/25 (76%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPN 151
           NT LH A + G+L+ VK+L+EAG +
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 32/182 (17%)

Query: 70  LLIQ----TNAK---GDSPLHA--AAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLG 120
           LLI+     NAK   G +PLH   +     P V+++L+        A+            
Sbjct: 102 LLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK-GADVNALDLY--------- 151

Query: 121 LTNEEENTALHEAVQCGNLDA--VKILMEAGPNFPYSANVNGETPLYMAA--ARGSKKMV 176
                  T L   ++  N +   +++L++AG +  Y+ +    + L+      +   ++V
Sbjct: 152 -----GMTPLAVLLKSRNANVELLRLLIDAGAD-VYAVDDRFRSLLHHHLQSFKPRARIV 205

Query: 177 AEILEKCSSAAHDGPNGKTALH--AAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS 234
            E++      A     G T LH  A  +S    +V  LL     +   R+  G TPLH++
Sbjct: 206 RELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISIN-ARNRYGQTPLHYA 264

Query: 235 AY 236
           A 
Sbjct: 265 AV 266

Length = 471

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 47/173 (27%), Positives = 60/173 (34%), Gaps = 49/173 (28%)

Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVN-------------GETPLYMAAARGSKK 174
           TALH A    N + VK+L+E G + P  A  +             GE+PL  AA  GS  
Sbjct: 130 TALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPS 189

Query: 175 MVAEILEKCSSAAHDGPN-------GKTALHAAV------NSYAA------DVVEKLLAK 215
           +VA + E       D  +       G T LH  V        Y        +    LL K
Sbjct: 190 IVALLSE-------DPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK 242

Query: 216 KRHLTRERDDC---GWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTA 265
            R            G TPL  +A  G   +  L L        I  K +K  A
Sbjct: 243 LRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA-------IKYKQKKFVA 288

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)

Query: 75  NAKGDSPLHAAAKCGRP--AVVKVLIEFAKKQPTAMKCCAKTAWQML-------GLTNEE 125
           N+ G++ LH   +  +    ++K+LI+  K     +   AK     L        + +  
Sbjct: 138 NSDGENLLHLYLESNKIDLKILKLLID--KG----VDINAKNRVNYLLSYGVPINIKDVY 191

Query: 126 ENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSS 185
             T LH AV   N + VK L++ G N P   N  G+TPL++A    +K++   +L    S
Sbjct: 192 GFTPLHYAVYNNNPEFVKYLLDLGAN-PNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250

Query: 186 AAH 188
              
Sbjct: 251 IKT 253

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 9/192 (4%)

Query: 129 ALHEAVQCGNLDAVKILMEAG--PNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA 186
           AL +A+  G LD  + L++ G  PNF      +G +P+ +A      + +  +++  +  
Sbjct: 5   ALCDAILFGELDIARRLLDIGINPNFEIY---DGISPIKLAMKFRDSEAIKLLMKHGAIP 61

Query: 187 AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
               P+ ++ LH AV       VE+LL   +         G TPLH +  L   DI  LL
Sbjct: 62  DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLL 121

Query: 247 LEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVS 306
           +   G+   I + D+  + L +A   G       +I H   C D+ D  G   L  + ++
Sbjct: 122 IAR-GADPDIPNTDK-FSPLHLAVMMGDIKGIELLIDH-KACLDIEDCCGCTPL-IIAMA 177

Query: 307 LHESKLKRLLKD 318
             +  + ++L D
Sbjct: 178 KGDIAICKMLLD 189

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 195 TALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL 247
           TALH A  S   ++V+ LL K   + R  D+ G T LH +A  G  ++  LLL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINR-TDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 57/214 (26%), Positives = 89/214 (41%), Gaps = 41/214 (19%)

Query: 126 ENTALHEAVQCGNLDA-VKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCS 184
           +NT LH A Q  +L   V  L+E G +   + N+ GETPLY+ A  G             
Sbjct: 273 KNTPLHHASQAPSLSRLVPKLLERGADVN-AKNIKGETPLYLMAKNG------------- 318

Query: 185 SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG-LKDIT 243
              +D  N +T +    +  AAD +                   TPLH ++ L   KDI 
Sbjct: 319 ---YDTENIRTLIMLGADVNAADRLYI-----------------TPLHQASTLDRNKDIV 358

Query: 244 ALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFL 303
             LLE  G++    D   K T +  AA + +  +  T++ +  +   L    G   LHF 
Sbjct: 359 ITLLEL-GANVNARDYCDK-TPIHYAAVRNNVVIINTLLDYGADIEALSQKIG-TALHFA 415

Query: 304 MVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLH 337
           +   +     + L D    + ++ KN+  +TPLH
Sbjct: 416 LCGTNPYMSVKTLID--RGANVNSKNKDLSTPLH 447

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 43/218 (19%), Positives = 82/218 (37%), Gaps = 37/218 (16%)

Query: 2   EPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVE 61
              + +A  N  +E F  I  +  ++I T +               K  + + +  +  +
Sbjct: 102 LVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLV----------YIDKKSKDDIIEAEITK 151

Query: 62  QILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGL 121
            +L     + ++   KG++ LH A +     + ++L+ +        K            
Sbjct: 152 LLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKT----------- 200

Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAAR-GSKKMVAEIL 180
                N+ LH AV+  N   V IL+E G +     +  G TPL+++        ++  +L
Sbjct: 201 ----NNSPLHHAVKHYNKPIVHILLENGASTDAR-DKCGNTPLHISVGYCKDYDILKLLL 255

Query: 181 EKCSSA-AHDGPNGKTALHAAVNS---------YAADV 208
           E      A     G TALH+++ S         Y AD+
Sbjct: 256 EHGVDVNAKSYILGLTALHSSIKSERKLKLLLEYGADI 293

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 26/203 (12%)

Query: 165 YMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYA---ADVVEKLLAKKRHL-T 220
            + A+  + + V  +L   +     G  GKT LH  ++  +    D+V  LL     +  
Sbjct: 19  LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA 78

Query: 221 RERDDCGWTPLHHSAYLGLK-DITALLLEFDGSSALILDKDR-KMTAL--LMAASQGHES 276
            ER  CG+TPLH   Y     D+  LL++   + A +  KD+   T L   ++    +  
Sbjct: 79  PER--CGFTPLHLYLYNATTLDVIKLLIK---AGADVNAKDKVGRTPLHVYLSGFNINPK 133

Query: 277 LAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHES-KLKRLL----KDPLYKSFIDEKNEM 331
           +   ++    +   L D  G   L  L+ S + + +L RLL     D             
Sbjct: 134 VIRLLLRKGADVNAL-DLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDR------ 186

Query: 332 GNTPLHILATLSARTCNEIVRQI 354
             + LH     S +    IVR++
Sbjct: 187 FRSLLHHHL-QSFKPRARIVREL 208

Length = 471

>gnl|CDD|222559 pfam14126, DUF4293, Domain of unknown function (DUF4293)

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 12/93 (12%)

Query: 430 LVVAALTATVTFAAALTLLGGNKGDNEDGPNRGSAIFA-KNAAFQAFIISDAIAMVLSLF 488
           L++AAL A V     L+ L               AIF  KN   Q  +    I + L L 
Sbjct: 9   LLLAALLAGVLLLLVLSALLA-----------LVAIFLFKNRKLQIRLCRLNILLNLGLL 57

Query: 489 AAFVHFILSLKLFRKFIFVFVFALFFTLIAMVL 521
             F +F L+L       F     LF  L+A++L
Sbjct: 58  GLFAYFFLNLSGETGATFEKGIGLFLPLVAIIL 90

This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 136 and 154 amino acids in length. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	525
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02792	631	ankyrin-like protein; Provisional	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.93
PF13962	113	PGG: Domain of unknown function	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.85
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
PHA02741	169	hypothetical protein; Provisional	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.74
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.73
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.68
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.67
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.5
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.49
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.49
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.45
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.37
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.33
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.33
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.33
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.31
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.29
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.28
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.28
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.28
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.27
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.77
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.77
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.69
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.67
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.62
PF13606	30	Ank_3: Ankyrin repeat	98.59
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.56
PF13606	30	Ank_3: Ankyrin repeat	98.53
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.48
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.47
KOG0522	560	consensus Ankyrin repeat protein [General function	98.44
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.36
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.33
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.25
KOG0522	560	consensus Ankyrin repeat protein [General function	98.24
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.17
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.16
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.04
KOG0511	516	consensus Ankyrin repeat protein [General function	97.96
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.71
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.69
KOG0511	516	consensus Ankyrin repeat protein [General function	97.68
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.66
KOG2384	223	consensus Major histocompatibility complex protein	97.66
KOG2384	223	consensus Major histocompatibility complex protein	97.57
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.55
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.31
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.3
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.12
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.82
KOG2505	591	consensus Ankyrin repeat protein [General function	95.76
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.51
KOG2505	591	consensus Ankyrin repeat protein [General function	94.28
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.03
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	91.12
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	90.37
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.05
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.67
TIGR01569	154	A_tha_TIGR01569 plant integral membrane protein TI	84.06

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.7e-47  Score=405.20  Aligned_cols=345  Identities=20%  Similarity=0.247  Sum_probs=292.5

Q ss_pred             hHHHHHHHcCCcchhhhhhhhccc-cccccCCCCchhhhhhhccccc---------------------------------
Q 009805            3 PKLYEAATNGEIEPFNGIAKDNLR-SIVTHNNKHTVLHVNIARQSLK---------------------------------   48 (525)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~Lh~A~~~~~~~---------------------------------   48 (525)
                      ++||+|+..|+.|+|+.|++.+++ ...+|..|.||||+|+...+..                                 
T Consensus        43 t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (682)
T PHA02876         43 TAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACI  122 (682)
T ss_pred             hHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHH
Confidence            689999999999999999998766 3466778999999887331100                                 


Q ss_pred             ------------------------------ccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHH
Q 009805           49 ------------------------------NKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLI   98 (525)
Q Consensus        49 ------------------------------~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll   98 (525)
                                                    -..|+.+++++|++    .+.+++.+|..|.||||+|++.|+.++|++|+
T Consensus       123 ~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~----~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL  198 (682)
T PHA02876        123 HILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLE----GGADVNAKDIYCITPIHYAAERGNAKMVNLLL  198 (682)
T ss_pred             HHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence                                          02366777777765    47788899999999999999999999999999


Q ss_pred             HhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCC----------------------------
Q 009805           99 EFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGP----------------------------  150 (525)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~----------------------------  150 (525)
                      +.|++               ++..+.+|.||||+|+..|+.++++.|++.++                            
T Consensus       199 ~~Gad---------------~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g  263 (682)
T PHA02876        199 SYGAD---------------VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAG  263 (682)
T ss_pred             HCCCC---------------cCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCC
Confidence            99987               55677788888888888888877777666544                            


Q ss_pred             -CCCCCCCCCCchHHHHHHHcCCH-HHHHHHHHhcCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHhcCcCcccCCCCC
Q 009805          151 -NFPYSANVNGETPLYMAAARGSK-KMVAEILEKCSSAAHDGPNGKTALHAAVNSY-AADVVEKLLAKKRHLTRERDDCG  227 (525)
Q Consensus       151 -~~~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~d~~g  227 (525)
                       +++ ..+..|.||||+|+..|+. +++++|++.|++++.+|..|.||||+|+..| ..++++.|+..+.+ ++..|..|
T Consensus       264 ~~vn-~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad-in~~d~~g  341 (682)
T PHA02876        264 FSVN-SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD-VNAADRLY  341 (682)
T ss_pred             CCCC-CCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC-CCCcccCC
Confidence             333 4566899999999999986 6999999999999999999999999999998 59999999999998 68899999


Q ss_pred             CcHHHHHHHcC-ChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhc
Q 009805          228 WTPLHHSAYLG-LKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVS  306 (525)
Q Consensus       228 ~tpL~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  306 (525)
                      .||||+|+..+ +.+++++|++.|.+. +..+. .|.||||+|+..|+.+++++|++++++ ++..+..|.||||+|+..
T Consensus       342 ~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~-~G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~  418 (682)
T PHA02876        342 ITPLHQASTLDRNKDIVITLLELGANV-NARDY-CDKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFALCG  418 (682)
T ss_pred             CcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHc
Confidence            99999999864 688999999999987 45555 799999999999999999999999998 678899999999999987


Q ss_pred             CCH-HHHHHHhhCccccccccccCCCCChHHHHHHhcC-c-hhHHHHHHHhCCCChHHHhccCCChHHHHhhc
Q 009805          307 LHE-SKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLS-A-RTCNEIVRQIGKGDTQAVNKKKISVKHIELYG  376 (525)
Q Consensus       307 ~~~-~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~-~-~~~~~ll~~~~~~d~~~~n~~g~t~l~~a~~~  376 (525)
                      +.. .+++.|++.   ++++|.+|..|+||||+|+..+ . ..+..|++  .|+|++.+|..|.||+++|...
T Consensus       419 ~~~~~~vk~Ll~~---gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~--~Gad~n~~d~~g~tpl~~a~~~  486 (682)
T PHA02876        419 TNPYMSVKTLIDR---GANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD--NGADVNAINIQNQYPLLIALEY  486 (682)
T ss_pred             CCHHHHHHHHHhC---CCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHh
Confidence            664 567888874   4569999999999999999876 3 44588888  8999999999999999999853

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-45  Score=392.66  Aligned_cols=358  Identities=17%  Similarity=0.159  Sum_probs=294.4

Q ss_pred             CCh-HHHHHHHcCCcchhhhhhh------hccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccc
Q 009805            1 MEP-KLYEAATNGEIEPFNGIAK------DNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQ   73 (525)
Q Consensus         1 m~~-~L~~A~~~g~~~~v~~ll~------~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~   73 (525)
                      |+| .|+.++..|+.+-+...+.      +|.+....+..+.||||.|+..       ||.|+|++|++   .+|..+..
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LH~A~~~-------g~~e~V~~ll~---~~~~~~~~   70 (682)
T PHA02876          1 MCPDDLYRIMCRGNCIDILSAIDNYDLHKHGANQCENESIPFTAIHQALQL-------RQIDIVEEIIQ---QNPELIYI   70 (682)
T ss_pred             CChHHHHHHHhcCchHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHH-------HhhhHHHHHHH---hCcccchh
Confidence            444 6999999999855433333      2555444455789999999999       99999999955   58888888


Q ss_pred             cCCCCCcHHHHHH-------------------------------------------------------------------
Q 009805           74 TNAKGDSPLHAAA-------------------------------------------------------------------   86 (525)
Q Consensus        74 ~~~~g~tpLh~A~-------------------------------------------------------------------   86 (525)
                      .|..|.||||+|+                                                                   
T Consensus        71 ~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~  150 (682)
T PHA02876         71 TDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIK  150 (682)
T ss_pred             hchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHH
Confidence            9999999999777                                                                   


Q ss_pred             ---HcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchH
Q 009805           87 ---KCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETP  163 (525)
Q Consensus        87 ---~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp  163 (525)
                         ..|+.+++++|++.|++               ++.+|..|.||||+|+..|+.++|++|+++|++++ ..+..|.||
T Consensus       151 ~~i~~~~~~i~k~Ll~~Gad---------------vn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n-~~~~~g~t~  214 (682)
T PHA02876        151 ERIQQDELLIAEMLLEGGAD---------------VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVN-IIALDDLSV  214 (682)
T ss_pred             HHHHCCcHHHHHHHHhCCCC---------------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-ccCCCCCCH
Confidence               33455556666666555               66789999999999999999999999999999986 677889999


Q ss_pred             HHHHHHcCCHHHHHHHHH-----------------------------hcCCCCCCCCCCCcHHHHHHHcCCH-HHHHHHH
Q 009805          164 LYMAAARGSKKMVAEILE-----------------------------KCSSAAHDGPNGKTALHAAVNSYAA-DVVEKLL  213 (525)
Q Consensus       164 L~~A~~~g~~~~v~~Ll~-----------------------------~~~~~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll  213 (525)
                      ||+|+..|+.+++++|++                             .|++++..+..|.||||+|+..++. ++++.|+
T Consensus       215 L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl  294 (682)
T PHA02876        215 LECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLL  294 (682)
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHH
Confidence            999999998888776654                             4556677788899999999999986 6899999


Q ss_pred             HhcCcCcccCCCCCCcHHHHHHHcC-ChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhc-CCHHHHHHHHhhCCCcccc
Q 009805          214 AKKRHLTRERDDCGWTPLHHSAYLG-LKDITALLLEFDGSSALILDKDRKMTALLMAASQ-GHESLAGTIIAHYPECYDL  291 (525)
Q Consensus       214 ~~~~~~~~~~d~~g~tpL~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~  291 (525)
                      +.+.+ ++.+|..|.||||+|+..| ..++++.|+..|.+. +..+. .|.||||+|+.. ++.++++.|++.+.+ ++.
T Consensus       295 ~~gad-in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~-~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~  370 (682)
T PHA02876        295 ERGAD-VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADR-LYITPLHQASTLDRNKDIVITLLELGAN-VNA  370 (682)
T ss_pred             HCCCC-CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCccc-CCCcHHHHHHHhCCcHHHHHHHHHcCCC-Ccc
Confidence            99988 6889999999999999999 589999999999987 44455 799999999985 578899999999988 788


Q ss_pred             ccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCch--hHHHHHHHhCCCChHHHhccCCCh
Q 009805          292 VDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSAR--TCNEIVRQIGKGDTQAVNKKKISV  369 (525)
Q Consensus       292 ~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~--~~~~ll~~~~~~d~~~~n~~g~t~  369 (525)
                      +|..|+||||+|+..++.++++.|++.   +++++..+..|.||||+|+..+..  .+..|++  .|+|++.+|..|+||
T Consensus       371 ~d~~G~TpLh~Aa~~~~~~iv~~Ll~~---gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~--~gadin~~d~~G~Tp  445 (682)
T PHA02876        371 RDYCDKTPIHYAAVRNNVVIINTLLDY---GADIEALSQKIGTALHFALCGTNPYMSVKTLID--RGANVNSKNKDLSTP  445 (682)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCccccCCCCCchHHHHHHcCCHHHHHHHHHh--CCCCCCcCCCCCChH
Confidence            999999999999999999999999985   456899999999999999987543  3477887  899999999999999


Q ss_pred             HHHHhhcCCCccchhhhHHHHhhcCCCC
Q 009805          370 KHIELYGCPELQGEIQGLSENIGRGQYP  397 (525)
Q Consensus       370 l~~a~~~~~~~~~~~~~~~~~l~~~~~~  397 (525)
                      ||+|+...    ...+.+..+++.+..+
T Consensus       446 Lh~Aa~~~----~~~~iv~lLl~~Gad~  469 (682)
T PHA02876        446 LHYACKKN----CKLDVIEMLLDNGADV  469 (682)
T ss_pred             HHHHHHhC----CcHHHHHHHHHCCCCC
Confidence            99998532    1234444455555444

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=4.6e-45  Score=365.41  Aligned_cols=327  Identities=15%  Similarity=0.123  Sum_probs=243.7

Q ss_pred             HHHHHHHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHH
Q 009805            4 KLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLH   83 (525)
Q Consensus         4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh   83 (525)
                      +|+.++..++.+.++.+++..     .+..+.++||.++..+     .++.+++++|++    .+.+++.+|.+|.||||
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~-----~~~g~~~~Lh~~~~~~-----~~~~~iv~~Ll~----~Gadvn~~d~~G~TpLh   77 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAI-----EPSGNYHILHAYCGIK-----GLDERFVEELLH----RGYSPNETDDDGNYPLH   77 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhcc-----CCCCCChHHHHHHHhc-----CCCHHHHHHHHH----CcCCCCccCCCCCCHHH
Confidence            356777777777777777541     1213467888765430     045677888765    25667778888888888


Q ss_pred             HHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcC--CHHHHHHHHhcCCCCCCCCCCCCc
Q 009805           84 AAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG--NLDAVKILMEAGPNFPYSANVNGE  161 (525)
Q Consensus        84 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~  161 (525)
                      +|++.|+.++|++|+++|++               ++.+|.+|.||||+|+..+  ..+++++|+++|++++...+..|.
T Consensus        78 ~Aa~~g~~eiv~lLL~~GAd---------------in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~  142 (446)
T PHA02946         78 IASKINNNRIVAMLLTHGAD---------------PNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGC  142 (446)
T ss_pred             HHHHcCCHHHHHHHHHCcCC---------------CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCC
Confidence            88888888888888888876               5567888888888887665  367888888888887755677788


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCC--HHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcC-
Q 009805          162 TPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYA--ADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG-  238 (525)
Q Consensus       162 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~--~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g-  238 (525)
                      |||| |+..|+.+++++|++.|++++.+|..|+||||.|+..++  .+++++|++.|++ ++.+|.+|.||||+|+..+ 
T Consensus       143 tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad-in~~d~~G~TpLH~Aa~~~~  220 (446)
T PHA02946        143 GPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS-PSKPDHDGNTPLHIVCSKTV  220 (446)
T ss_pred             cHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCC
Confidence            8886 556678888888888888888888888888888776443  5788888888877 5777888888888888765 


Q ss_pred             -ChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCC-HHHHHHHHhhCCCc-------------------cccc-cCCC
Q 009805          239 -LKDITALLLEFDGSSALILDKDRKMTALLMAASQGH-ESLAGTIIAHYPEC-------------------YDLV-DNGG  296 (525)
Q Consensus       239 -~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~-~~~v~~Ll~~~~~~-------------------~~~~-d~~g  296 (525)
                       +.+++++|++ +++. +..+. .|.||||+|+..++ .++++.|++++...                   +... +..|
T Consensus       221 ~~~~iv~lLl~-gadi-n~~d~-~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~  297 (446)
T PHA02946        221 KNVDIINLLLP-STDV-NKQNK-FGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYD  297 (446)
T ss_pred             CcHHHHHHHHc-CCCC-CCCCC-CCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccC
Confidence             6778887775 5554 44444 68888888888777 47777887776531                   0111 2357


Q ss_pred             CchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHhccCCChHHHHhh
Q 009805          297 WNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVNKKKISVKHIELY  375 (525)
Q Consensus       297 ~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n~~g~t~l~~a~~  375 (525)
                      +||||+|+.+|+.+++++|++..          ..|.||||+|+..+...+ ..|+.  .+++++.. ..|.||+++|..
T Consensus       298 ~TpLh~Aa~~g~~eivk~Ll~~~----------~~~~t~L~~A~~~~~~~~v~~Ll~--~ga~~n~~-~~G~t~l~~a~~  364 (446)
T PHA02946        298 STDFKMAVEVGSIRCVKYLLDND----------IICEDAMYYAVLSEYETMVDYLLF--NHFSVDSV-VNGHTCMSECVR  364 (446)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCC----------CccccHHHHHHHhCHHHHHHHHHH--CCCCCCCc-cccccHHHHHHH
Confidence            89999999999999999999842          358999999999987665 77777  88888885 589999999996


Q ss_pred             cC
Q 009805          376 GC  377 (525)
Q Consensus       376 ~~  377 (525)
                      ..
T Consensus       365 ~~  366 (446)
T PHA02946        365 LN  366 (446)
T ss_pred             cC
Confidence            54

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=8.4e-45  Score=363.54  Aligned_cols=308  Identities=14%  Similarity=0.101  Sum_probs=264.5

Q ss_pred             hHHHHHH--HcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCc
Q 009805            3 PKLYEAA--TNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDS   80 (525)
Q Consensus         3 ~~L~~A~--~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~t   80 (525)
                      ..||.++  ..++.+++++|+++|++++.++.+|.||||+|+..       |+.+++++|+++    +.+++.+|.+|.|
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~-------g~~eiv~lLL~~----GAdin~~d~~g~T  107 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKI-------NNNRIVAMLLTH----GADPNACDKQHKT  107 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHc-------CCHHHHHHHHHC----cCCCCCCCCCCCC
Confidence            3566655  44577899999999999999999999999999999       999999999773    6788899999999


Q ss_pred             HHHHHHHcCC--hhHHHHHHHhhhcCChhHhhhhhhhHHHhc-CccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 009805           81 PLHAAAKCGR--PAVVKVLIEFAKKQPTAMKCCAKTAWQMLG-LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSAN  157 (525)
Q Consensus        81 pLh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  157 (525)
                      |||+|+..++  .+++++|++.|++               ++ ..|.+|.|||| |+..|+.+++++|++.|++++ ..|
T Consensus       108 pLh~A~~~~~~~~e~v~lLl~~Gad---------------in~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~-~~d  170 (446)
T PHA02946        108 PLYYLSGTDDEVIERINLLVQYGAK---------------INNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR-IVD  170 (446)
T ss_pred             HHHHHHHcCCchHHHHHHHHHcCCC---------------cccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc-ccC
Confidence            9999998764  7899999999987               33 35889999998 667899999999999999986 788


Q ss_pred             CCCchHHHHHHHcC--CHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHhcCcCcccCCCCCCcHHHH
Q 009805          158 VNGETPLYMAAARG--SKKMVAEILEKCSSAAHDGPNGKTALHAAVNSY--AADVVEKLLAKKRHLTRERDDCGWTPLHH  233 (525)
Q Consensus       158 ~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~  233 (525)
                      ..|+||||+|+..+  +.+++++|+++|++++.+|.+|.||||+|+..+  +.+++++|+. +++ ++.+|..|.||||+
T Consensus       171 ~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad-in~~d~~G~TpLh~  248 (446)
T PHA02946        171 KFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD-VNKQNKFGDSPLTL  248 (446)
T ss_pred             CCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC-CCCCCCCCCCHHHH
Confidence            89999999998755  468999999999999999999999999999986  7899999985 666 78899999999999


Q ss_pred             HHHcCC-hhHHHHHhhcCCCcc-------------------hhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCcccccc
Q 009805          234 SAYLGL-KDITALLLEFDGSSA-------------------LILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVD  293 (525)
Q Consensus       234 A~~~g~-~~~v~~Ll~~~~~~~-------------------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d  293 (525)
                      |+..++ .+++++|++++....                   .......|.||||+|+.+|+.+++++|+++++       
T Consensus       249 A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~-------  321 (446)
T PHA02946        249 LIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI-------  321 (446)
T ss_pred             HHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC-------
Confidence            999988 589999999875421                   11111257799999999999999999999864       


Q ss_pred             CCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHH
Q 009805          294 NGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVR  352 (525)
Q Consensus       294 ~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~  352 (525)
                       .|+||||+|+..++.++++.|+..+   +++|.+ .+|+||||+|++.+.... ..|+.
T Consensus       322 -~~~t~L~~A~~~~~~~~v~~Ll~~g---a~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~  376 (446)
T PHA02946        322 -ICEDAMYYAVLSEYETMVDYLLFNH---FSVDSV-VNGHTCMSECVRLNNPVILSKLML  376 (446)
T ss_pred             -ccccHHHHHHHhCHHHHHHHHHHCC---CCCCCc-cccccHHHHHHHcCCHHHHHHHHh
Confidence             4799999999999999999999854   458875 589999999999987666 66665

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.1e-45  Score=361.05  Aligned_cols=336  Identities=23%  Similarity=0.286  Sum_probs=295.3

Q ss_pred             ChHHHHHHHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcH
Q 009805            2 EPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSP   81 (525)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tp   81 (525)
                      |.++|.|+..|..      ++.-......|..|++|||+|++.       ..++.+++|++.    +.+....|.++.+|
T Consensus        62 d~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~a~~~-------~~~~~i~~Lls~----gad~~~~n~~~~ap  124 (929)
T KOG0510|consen   62 DTELHHASARNYI------LSKLAISYAKDSADNTPLHAAVEY-------NQGDKIQVLLSY----GADTPLRNLNKNAP  124 (929)
T ss_pred             hhHHHHHHhhcch------hhhhhhhhhhhcccCchhHHHhhc-------chHHHHHHHHhc----CCCCChhhhhccCc
Confidence            4567777776655      333344445677899999999999       999999999884    88888899999999


Q ss_pred             HHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCc
Q 009805           82 LHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGE  161 (525)
Q Consensus        82 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  161 (525)
                      +|+|+..|+.+..+.|++++.+               ++..|..|.||||.|+..++.|..+.|++.|++.. ..|.+|.
T Consensus       125 lh~A~~~~~~s~L~~Ll~~~~d---------------vnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~-K~~~~~~  188 (929)
T KOG0510|consen  125 LHLAADSGNYSCLKLLLDYGAD---------------VNLEDENGFTPLHLAARKNKVEAKKELINKGADPC-KSDIDGN  188 (929)
T ss_pred             hhhccccchHHHHHHHHHhcCC---------------ccccccCCCchhhHHHhcChHHHHHHHHhcCCCCC-cccCcCC
Confidence            9999999999999999999977               77899999999999999999998899999999975 7889999


Q ss_pred             hHHHHHHHcCCHHHHHHHHH-----hcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcC--------------ccc
Q 009805          162 TPLYMAAARGSKKMVAEILE-----KCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHL--------------TRE  222 (525)
Q Consensus       162 tpL~~A~~~g~~~~v~~Ll~-----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~--------------~~~  222 (525)
                      +|+|.|+..|..++.+..+.     ++..++..+..|.+|||.|+..|+.++++.+++.+...              .+.
T Consensus       189 ~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~  268 (929)
T KOG0510|consen  189 FPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVND  268 (929)
T ss_pred             chHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhc
Confidence            99999999999999999998     66788999999999999999999999999999876543              345


Q ss_pred             CCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHh-hCCCccccccCCCCchhH
Q 009805          223 RDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIA-HYPECYDLVDNGGWNVLH  301 (525)
Q Consensus       223 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh  301 (525)
                      .|.+|.||||+|++.|+.+.++.|+..|++. +.++. ++.||||.|+.+|+.+.|+.|++ .+-...+..|-.|+||||
T Consensus       269 ~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~-d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLH  346 (929)
T KOG0510|consen  269 EDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNK-DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLH  346 (929)
T ss_pred             ccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCC-CCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchh
Confidence            6899999999999999999999999999998 44444 78999999999999999999999 666667788999999999


Q ss_pred             HHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHhccCCChHHHHh
Q 009805          302 FLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVNKKKISVKHIEL  374 (525)
Q Consensus       302 ~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n~~g~t~l~~a~  374 (525)
                      .|+++|+.++++.|++.+.........|.+|+||||+|+..|...+ ..|+.  .|+|+..+|++|.|++++-.
T Consensus       347 laa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~--~Ga~I~~~n~~g~SA~~~~~  418 (929)
T KOG0510|consen  347 LAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLIS--HGADIGVKNKKGKSAFDTRP  418 (929)
T ss_pred             hhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHH--cCCceeeccccccccccccc
Confidence            9999999999999999655431111569999999999999998777 88888  99999999999999999543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-42  Score=351.16  Aligned_cols=317  Identities=21%  Similarity=0.238  Sum_probs=264.9

Q ss_pred             CChHHHHHHHcCCcchhhhhhhh-ccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCC
Q 009805            1 MEPKLYEAATNGEIEPFNGIAKD-NLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGD   79 (525)
Q Consensus         1 m~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~   79 (525)
                      |+..|..|+..|+++.++.+++. +...+..+..|.||||.|++.       |+.+++++|++    .+.+++..+..|.
T Consensus         1 ~~~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~-------g~~~iv~~Ll~----~Ga~~n~~~~~~~   69 (434)
T PHA02874          1 ASQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRS-------GDAKIVELFIK----HGADINHINTKIP   69 (434)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHc-------CCHHHHHHHHH----CCCCCCCCCCCCC
Confidence            56789999999999999999986 444556666899999999999       99999999976    3667788889999


Q ss_pred             cHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q 009805           80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN  159 (525)
Q Consensus        80 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  159 (525)
                      ||||.|+..|+.+++++|++.|.+..                       .  .+....+.++++.|++.|.+++ ..+..
T Consensus        70 t~L~~A~~~~~~~iv~~Ll~~g~~~~-----------------------~--~~~~~~~~~~i~~ll~~g~d~n-~~~~~  123 (434)
T PHA02874         70 HPLLTAIKIGAHDIIKLLIDNGVDTS-----------------------I--LPIPCIEKDMIKTILDCGIDVN-IKDAE  123 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCC-----------------------c--chhccCCHHHHHHHHHCcCCCC-CCCCC
Confidence            99999999999999999999987521                       1  1233456789999999999987 67889


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCC
Q 009805          160 GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGL  239 (525)
Q Consensus       160 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~  239 (525)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+++ .+..+..|.||||+|+..|+
T Consensus       124 g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~g~  202 (434)
T PHA02874        124 LKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY-ANVKDNNGESPLHNAAEYGD  202 (434)
T ss_pred             CccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999988 57788899999999999999


Q ss_pred             hhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcC-CHHHHHHHhhC
Q 009805          240 KDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSL-HESKLKRLLKD  318 (525)
Q Consensus       240 ~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~-~~~~~~~ll~~  318 (525)
                      .+++++|+++|++. ...+. .|.||||.|+..+. +.+++|+ .+++ ++.+|..|+||||+|+..+ +.++++.|++.
T Consensus       203 ~~iv~~Ll~~g~~i-~~~~~-~g~TpL~~A~~~~~-~~i~~Ll-~~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~  277 (434)
T PHA02874        203 YACIKLLIDHGNHI-MNKCK-NGFTPLHNAIIHNR-SAIELLI-NNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLYH  277 (434)
T ss_pred             HHHHHHHHhCCCCC-cCCCC-CCCCHHHHHHHCCh-HHHHHHH-cCCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHC
Confidence            99999999999876 34444 69999999998765 5666666 4555 6788999999999999875 77899999884


Q ss_pred             ccccccccccCCCCChHHHHHHhcC--chhHHHHHHHhCCCChHHHhcc
Q 009805          319 PLYKSFIDEKNEMGNTPLHILATLS--ARTCNEIVRQIGKGDTQAVNKK  365 (525)
Q Consensus       319 ~~~~~~in~~d~~G~T~Lh~A~~~~--~~~~~~ll~~~~~~d~~~~n~~  365 (525)
                         +++++.+|..|+||||+|++.+  ...+..++.  .++..+..+..
T Consensus       278 ---gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~--~~~~~~~~~~~  321 (434)
T PHA02874        278 ---KADISIKDNKGENPIDTAFKYINKDPVIKDIIA--NAVLIKEADKL  321 (434)
T ss_pred             ---cCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHH--hcCchhhcccc
Confidence               4668999999999999999875  334466776  45544443333

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=6e-42  Score=336.76  Aligned_cols=305  Identities=21%  Similarity=0.261  Sum_probs=276.6

Q ss_pred             ChHHHHHHHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcH
Q 009805            2 EPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSP   81 (525)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tp   81 (525)
                      +.+||+|++.+-.+.++.|++.|++....+..+.+|+|+|+..       |+.++.+.|+++    +.+++..|..|.||
T Consensus        89 n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~-------~~~s~L~~Ll~~----~~dvnl~de~~~Tp  157 (929)
T KOG0510|consen   89 NTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADS-------GNYSCLKLLLDY----GADVNLEDENGFTP  157 (929)
T ss_pred             CchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhcccc-------chHHHHHHHHHh----cCCccccccCCCch
Confidence            3579999999999999999999999999999999999999999       999999999874    58889999999999


Q ss_pred             HHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHh-----cCCCCCCCC
Q 009805           82 LHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILME-----AGPNFPYSA  156 (525)
Q Consensus        82 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-----~~~~~~~~~  156 (525)
                      ||+||..++.|..+.|++.+++               ....|.+|++|+|.|+++|..|+.+..+.     ++..++ ..
T Consensus       158 Lh~A~~~~~~E~~k~Li~~~a~---------------~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in-~~  221 (929)
T KOG0510|consen  158 LHLAARKNKVEAKKELINKGAD---------------PCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHIN-FD  221 (929)
T ss_pred             hhHHHhcChHHHHHHHHhcCCC---------------CCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccc-cc
Confidence            9999999999988999999998               34579999999999999999999999998     444554 56


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHhcCCC---------------CCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcc
Q 009805          157 NVNGETPLYMAAARGSKKMVAEILEKCSSA---------------AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTR  221 (525)
Q Consensus       157 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~---------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  221 (525)
                      +..+.||||.|+..|+.++++.+++.|...               +..|.+|.||||+|+++|+.+.++.|+..|++ ++
T Consensus       222 ~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~  300 (929)
T KOG0510|consen  222 NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS-IN  300 (929)
T ss_pred             cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc-cc
Confidence            778999999999999999999999988432               34688999999999999999999999999999 68


Q ss_pred             cCCCCCCcHHHHHHHcCChhHHHHHhh-cCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccc--cccCCCCc
Q 009805          222 ERDDCGWTPLHHSAYLGLKDITALLLE-FDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYD--LVDNGGWN  298 (525)
Q Consensus       222 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~--~~d~~g~t  298 (525)
                      .++.++.||||.|+.+|+...++.|++ .+....+..|- .|+||||.|+++|+.++++.|+++|+...+  ..|.+|.|
T Consensus       301 ~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~-~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~T  379 (929)
T KOG0510|consen  301 SKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDL-HGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNT  379 (929)
T ss_pred             ccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccc-cCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCch
Confidence            899999999999999999999999999 55555455555 899999999999999999999999998665  56999999


Q ss_pred             hhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHH
Q 009805          299 VLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI  338 (525)
Q Consensus       299 ~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~  338 (525)
                      |||.|+..|+..+++.|+..   ++++..+|+.|.|++++
T Consensus       380 aLH~Aa~~g~~~av~~Li~~---Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  380 ALHLAAKYGNTSAVQKLISH---GADIGVKNKKGKSAFDT  416 (929)
T ss_pred             hhhHHHHhccHHHHHHHHHc---CCceeeccccccccccc
Confidence            99999999999999999984   45699999999999996

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.7e-42  Score=356.30  Aligned_cols=354  Identities=13%  Similarity=0.052  Sum_probs=268.5

Q ss_pred             HcCCcchhhhhhhhc-cccccc-cCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q 009805           10 TNGEIEPFNGIAKDN-LRSIVT-HNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAK   87 (525)
Q Consensus        10 ~~g~~~~v~~ll~~~-~~~~~~-~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~   87 (525)
                      +.++.+++++|++.| ++.+.. +..|.||||.|+...     .++.+++++|++    .+.+++.+|..|.||||+|++
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~-----~~~~eIVklLLe----~GADVN~kD~~G~TPLH~Aa~  221 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNM-----YVDIDILEWLCN----NGVNVNLQNNHLITPLHTYLI  221 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhc-----cCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHH
Confidence            468999999999999 998877 778999999986440     067899999976    378899999999999999999


Q ss_pred             cCCh--hHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHH---HcCCHHHHHHHHhcCCCCCCCCCCCCch
Q 009805           88 CGRP--AVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV---QCGNLDAVKILMEAGPNFPYSANVNGET  162 (525)
Q Consensus        88 ~g~~--~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  162 (525)
                      .|+.  ++|++|++.|++               ++.+|..|.||||+|+   ..++.++++.|++.+.... .  .....
T Consensus       222 ~g~~~~eIVklLLe~GAD---------------VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~-~--~~~~~  283 (764)
T PHA02716        222 TGNVCASVIKKIIELGGD---------------MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNK-V--KNIPM  283 (764)
T ss_pred             cCCCCHHHHHHHHHcCCC---------------CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccc-c--ccchh
Confidence            9964  899999999998               6778999999999986   5678999999998753311 1  11223


Q ss_pred             HHH---HHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHH--cCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHH-
Q 009805          163 PLY---MAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVN--SYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY-  236 (525)
Q Consensus       163 pL~---~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~--~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~-  236 (525)
                      +++   .|+..|+.+++++|+++|++++.+|..|+||||+|+.  .++.+++++|++.|++ ++.+|..|+||||+|+. 
T Consensus       284 ~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~  362 (764)
T PHA02716        284 ILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTVLHTYLSM  362 (764)
T ss_pred             hhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCHHHHHHHh
Confidence            343   4789999999999999999999999999999999864  4678999999999998 68899999999999875 


Q ss_pred             -------------cCChhHHHHHhhcCCCcchhcccCCCCcHHHH----HHhcCCHHHHHHHHhhCCCccc-------cc
Q 009805          237 -------------LGLKDITALLLEFDGSSALILDKDRKMTALLM----AASQGHESLAGTIIAHYPECYD-------LV  292 (525)
Q Consensus       237 -------------~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~----A~~~g~~~~v~~Ll~~~~~~~~-------~~  292 (525)
                                   .++.+++++|+++|++. ...+. .|.||||.    |...++.+++++|++.+.....       ..
T Consensus       363 lav~~~ld~~~~~~~~~eVVklLL~~GADI-n~kn~-~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll  440 (764)
T PHA02716        363 LSVVNILDPETDNDIRLDVIQCLISLGADI-TAVNC-LGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLL  440 (764)
T ss_pred             hhhhccccccccccChHHHHHHHHHCCCCC-CCcCC-CCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhh
Confidence                         36789999999999987 44555 79999994    2345789999999997653110       11


Q ss_pred             cCCCCch--hHHHHhcCCHHHHHHHhhC---------------ccccccccccCCCCChHHHHHHhcCch------hHHH
Q 009805          293 DNGGWNV--LHFLMVSLHESKLKRLLKD---------------PLYKSFIDEKNEMGNTPLHILATLSAR------TCNE  349 (525)
Q Consensus       293 d~~g~t~--Lh~A~~~~~~~~~~~ll~~---------------~~~~~~in~~d~~G~T~Lh~A~~~~~~------~~~~  349 (525)
                      +..+.+|  +|.++..+..+....+.+.               .....++|.+|..|+||||+|+..+..      .+..
T Consensus       441 ~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~  520 (764)
T PHA02716        441 IRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVY  520 (764)
T ss_pred             hccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHH
Confidence            1223333  4444444332222221110               012245788999999999999988643      2377


Q ss_pred             HHHHhCCCChHHHhccCCChHHHHhhcCCCccchhhhHHHHhhcCC
Q 009805          350 IVRQIGKGDTQAVNKKKISVKHIELYGCPELQGEIQGLSENIGRGQ  395 (525)
Q Consensus       350 ll~~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~~~  395 (525)
                      |++  .|+|+|.+|+.|+||||+|.+++....-+.+.+..+++.+.
T Consensus       521 LL~--~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga  564 (764)
T PHA02716        521 LLS--IQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRP  564 (764)
T ss_pred             HHh--CCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCC
Confidence            887  89999999999999999999766322223344455555443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.9e-42  Score=345.35  Aligned_cols=294  Identities=20%  Similarity=0.231  Sum_probs=259.9

Q ss_pred             chhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhh
Q 009805           36 TVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTA  115 (525)
Q Consensus        36 t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (525)
                      .-|+.|+..       |+.+.++.|++   ..+..++..+..|.||||.|++.|+.++|++|++.|++            
T Consensus         3 ~~l~~ai~~-------gd~~~v~~ll~---~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~------------   60 (434)
T PHA02874          3 QDLRMCIYS-------GDIEAIEKIIK---NKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD------------   60 (434)
T ss_pred             HHHHHHHhc-------CCHHHHHHHHH---cCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------
Confidence            357889999       99999999954   56666778888999999999999999999999999987            


Q ss_pred             HHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCc
Q 009805          116 WQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKT  195 (525)
Q Consensus       116 ~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t  195 (525)
                         ++..+..|.||||.|+..|+.+++++|+++|++...           .+....+.++++.|++.|++++.++..|.|
T Consensus        61 ---~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~-----------~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T  126 (434)
T PHA02874         61 ---INHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI-----------LPIPCIEKDMIKTILDCGIDVNIKDAELKT  126 (434)
T ss_pred             ---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-----------chhccCCHHHHHHHHHCcCCCCCCCCCCcc
Confidence               566788999999999999999999999999987542           123445789999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCH
Q 009805          196 ALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHE  275 (525)
Q Consensus       196 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~  275 (525)
                      |||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|++. ...+. .|.||||+|+..|+.
T Consensus       127 ~Lh~A~~~~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~-~g~tpL~~A~~~g~~  203 (434)
T PHA02874        127 FLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDN-NGESPLHNAAEYGDY  203 (434)
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCH
Confidence            99999999999999999999998 6888999999999999999999999999999876 34444 799999999999999


Q ss_pred             HHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcC-c-hhHHHHHHH
Q 009805          276 SLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLS-A-RTCNEIVRQ  353 (525)
Q Consensus       276 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~-~-~~~~~ll~~  353 (525)
                      +++++|++.+++ ++..+..|+||||+|+..+. +.+..|+.    +.++|.+|..|+||||+|+..+ . ..+..|+. 
T Consensus       204 ~iv~~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~----~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~-  276 (434)
T PHA02874        204 ACIKLLIDHGNH-IMNKCKNGFTPLHNAIIHNR-SAIELLIN----NASINDQDIDGSTPLHHAINPPCDIDIIDILLY-  276 (434)
T ss_pred             HHHHHHHhCCCC-CcCCCCCCCCHHHHHHHCCh-HHHHHHHc----CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHH-
Confidence            999999999998 67789999999999999876 45555553    4568999999999999999875 4 44588888 


Q ss_pred             hCCCChHHHhccCCChHHHHhhc
Q 009805          354 IGKGDTQAVNKKKISVKHIELYG  376 (525)
Q Consensus       354 ~~~~d~~~~n~~g~t~l~~a~~~  376 (525)
                       .++|++.+|..|.||+++|.+.
T Consensus       277 -~gad~n~~d~~g~TpL~~A~~~  298 (434)
T PHA02874        277 -HKADISIKDNKGENPIDTAFKY  298 (434)
T ss_pred             -CcCCCCCCCCCCCCHHHHHHHh
Confidence             8999999999999999999864

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.5e-41  Score=338.45  Aligned_cols=347  Identities=12%  Similarity=0.050  Sum_probs=273.7

Q ss_pred             ChHHHHHHHcC---CcchhhhhhhhccccccccCCCCchhhhhhhcccccccCC--chhhHHHHHHHHHhCCccccccCC
Q 009805            2 EPKLYEAATNG---EIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEG--ESVSTKFVEQILEICPSLLIQTNA   76 (525)
Q Consensus         2 ~~~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g--~~~~~~~ll~~~~~~~~~l~~~~~   76 (525)
                      .++||+|+..|   +.+++++|+++|++.+.+|..|+||||+|+..       +  +.|++++|++.  ..+...+..+.
T Consensus        42 ~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~-------~~~~~eIv~~Ll~~--~~~~~~~~~~~  112 (672)
T PHA02730         42 NNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKR-------KYVKSQIVHLLISS--YSNASNELTSN  112 (672)
T ss_pred             CcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHc-------CCCcHHHHHHHHhc--CCCCCcccccc
Confidence            37899999997   58999999999999999999999999999997       5  79999999762  11233455777


Q ss_pred             CCCcHHHHHHH--cCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCc-cCCCChHhHHHHHcCCHHHHHHHHhcCCCCC
Q 009805           77 KGDSPLHAAAK--CGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLT-NEEENTALHEAVQCGNLDAVKILMEAGPNFP  153 (525)
Q Consensus        77 ~g~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  153 (525)
                      .+++|||.++.  .++.++|++|++.+...+...          .+.+ +..|.+|++++...+++++|++|+++|++..
T Consensus       113 ~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~----------~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~  182 (672)
T PHA02730        113 INDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKN----------TNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYST  182 (672)
T ss_pred             cCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhh----------hhhhccccchhhhhHhcCCCchHHHHHHHHcCCccc
Confidence            79999999998  899999999997443322210          1111 2478999999999999999999999999974


Q ss_pred             -C-----CCCCCCc-hHHHHH------HHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHH--HHHcCCHHHHHHHHH----
Q 009805          154 -Y-----SANVNGE-TPLYMA------AARGSKKMVAEILEKCSSAAHDGPNGKTALHA--AVNSYAADVVEKLLA----  214 (525)
Q Consensus       154 -~-----~~~~~g~-tpL~~A------~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~--A~~~~~~~~~~~Ll~----  214 (525)
                       .     ..+..+. |.||++      ..+++.|++++|+++|++++.+|..|.||||+  +...++.|++++|++    
T Consensus       183 g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~  262 (672)
T PHA02730        183 GYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDT  262 (672)
T ss_pred             ccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhcccc
Confidence             1     1233344 444533      45678999999999999999999999999996  445577999999999    


Q ss_pred             ----------------------------hcCcCcc-------------------cCCCCCCc------------------
Q 009805          215 ----------------------------KKRHLTR-------------------ERDDCGWT------------------  229 (525)
Q Consensus       215 ----------------------------~~~~~~~-------------------~~d~~g~t------------------  229 (525)
                                                  ++.+..-                   ..+..|.+                  
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~  342 (672)
T PHA02730        263 CSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESI  342 (672)
T ss_pred             ccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhH
Confidence                                        4444211                   14555644                  


Q ss_pred             ---HHHHHHHcC---ChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCC----HHHHHHHHhhCCC-ccccccCCCCc
Q 009805          230 ---PLHHSAYLG---LKDITALLLEFDGSSALILDKDRKMTALLMAASQGH----ESLAGTIIAHYPE-CYDLVDNGGWN  298 (525)
Q Consensus       230 ---pL~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~-~~~~~d~~g~t  298 (525)
                         .||.-.+.+   +.+++++|+++|++... . . .|.||||+|+..++    .+++++|+++|++ .++..|..|+|
T Consensus       343 ~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~-k-~-~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T  419 (672)
T PHA02730        343 VQAMLINYLHYGDMVSIPILRCMLDNGATMDK-T-T-DNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRL  419 (672)
T ss_pred             HHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc-C-C-CCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCc
Confidence               677777756   48999999999999853 3 3 79999999998875    8999999999974 47888999999


Q ss_pred             hhHH---HHhcC---------CHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHhc-
Q 009805          299 VLHF---LMVSL---------HESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVNK-  364 (525)
Q Consensus       299 ~Lh~---A~~~~---------~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n~-  364 (525)
                      |||.   |...+         ..+++++|+.   .++++|.+|..|+||||+|+..+...+ ..|+.  .|+|++.+|+ 
T Consensus       420 ~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs---~GADINakD~~G~TPLh~Aa~~~~~eive~LI~--~GAdIN~~d~~  494 (672)
T PHA02730        420 CMYGLILSRFNNCGYHCYETILIDVFDILSK---YMDDIDMIDNENKTLLYYAVDVNNIQFARRLLE--YGASVNTTSRS  494 (672)
T ss_pred             hHhHHHHHHhccccccccchhHHHHHHHHHh---cccchhccCCCCCCHHHHHHHhCCHHHHHHHHH--CCCCCCCCCCc
Confidence            9994   33232         1245788887   345699999999999999999986655 77887  8999999997 


Q ss_pred             cCCChHHHHhh
Q 009805          365 KKISVKHIELY  375 (525)
Q Consensus       365 ~g~t~l~~a~~  375 (525)
                      .|.||+++|..
T Consensus       495 ~g~TaL~~Aa~  505 (672)
T PHA02730        495 IINTAIQKSSY  505 (672)
T ss_pred             CCcCHHHHHHH
Confidence            59999999975

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-40  Score=344.19  Aligned_cols=342  Identities=16%  Similarity=0.074  Sum_probs=258.5

Q ss_pred             hHHHHHHHc---CCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHH-HhCCccccccCCCC
Q 009805            3 PKLYEAATN---GEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQIL-EICPSLLIQTNAKG   78 (525)
Q Consensus         3 ~~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~-~~~~~~l~~~~~~g   78 (525)
                      ++||+|+..   |+.+++++|++.|++.+..+..|.||||+|+..       |+.++++.+.+.+ +..+. .+..+  .
T Consensus        34 t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~-------g~~~v~~~~~~~Ll~~~~~-~n~~~--~  103 (661)
T PHA02917         34 NALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNS-------RHVKVNKDIAMALLEATGY-SNIND--F  103 (661)
T ss_pred             cHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHc-------CChhHHHHHHHHHHhccCC-CCCCC--c
Confidence            689997555   889999999999999998888999999999999       8866654443332 22221 12222  2


Q ss_pred             CcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHH--HcCCHHHHHHHHhcCCCCCCC-
Q 009805           79 DSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV--QCGNLDAVKILMEAGPNFPYS-  155 (525)
Q Consensus        79 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~-  155 (525)
                      .+++|.|+..|+.++|++|++.|++               ++.+|..|.||||.|+  ..|+.+++++|+++|++++.. 
T Consensus       104 ~~~~~~a~~~~~~e~vk~Ll~~Gad---------------in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d  168 (661)
T PHA02917        104 NIFSYMKSKNVDVDLIKVLVEHGFD---------------LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYED  168 (661)
T ss_pred             chHHHHHhhcCCHHHHHHHHHcCCC---------------CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccc
Confidence            3678889999999999999999998               6778999999999654  578999999999999998632 


Q ss_pred             -CCCCC-----------chHHHHHHH-----------cCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCH--HHHH
Q 009805          156 -ANVNG-----------ETPLYMAAA-----------RGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAA--DVVE  210 (525)
Q Consensus       156 -~~~~g-----------~tpL~~A~~-----------~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~--~~~~  210 (525)
                       .+..|           .||||+|+.           .++.+++++|+++|++++.+|.+|.||||+|+.+|+.  ++++
T Consensus       169 ~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk  248 (661)
T PHA02917        169 EDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVK  248 (661)
T ss_pred             cccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHH
Confidence             12233           599999986           4689999999999999999999999999999999985  7999


Q ss_pred             HHHHhcCcCc---ccCCCCCCcHHHHHHHc-------C--ChhHHHHHhhcCCCcchh------c-----------ccCC
Q 009805          211 KLLAKKRHLT---RERDDCGWTPLHHSAYL-------G--LKDITALLLEFDGSSALI------L-----------DKDR  261 (525)
Q Consensus       211 ~Ll~~~~~~~---~~~d~~g~tpL~~A~~~-------g--~~~~v~~Ll~~~~~~~~~------~-----------~~~~  261 (525)
                      +|++ +.+..   ...|..|.+|+|+|+..       +  +.+++++|++.|++....      .           ....
T Consensus       249 ~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (661)
T PHA02917        249 LLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMN  327 (661)
T ss_pred             HHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhc
Confidence            9975 66533   24566788888888831       1  678999999999753110      0           0112


Q ss_pred             CCcHHHHHH---hcCC--HHHHHHHHhhCCCc-----------------------------cccccCCCCchhHHHHhcC
Q 009805          262 KMTALLMAA---SQGH--ESLAGTIIAHYPEC-----------------------------YDLVDNGGWNVLHFLMVSL  307 (525)
Q Consensus       262 g~tpL~~A~---~~g~--~~~v~~Ll~~~~~~-----------------------------~~~~d~~g~t~Lh~A~~~~  307 (525)
                      +.+++|.+.   ..|.  .++++.|++.|++.                             ....+.+|+||||.|++.+
T Consensus       328 ~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~  407 (661)
T PHA02917        328 SDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSN  407 (661)
T ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhc
Confidence            334444333   3554  44777777776652                             1223456999999987543


Q ss_pred             C-----------------------HHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHh
Q 009805          308 H-----------------------ESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVN  363 (525)
Q Consensus       308 ~-----------------------~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n  363 (525)
                      .                       .++++.|+..   ++++|.+|..|+||||+|+..+...+ ..|+.  .|+|++.+|
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~---GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~--~GAdin~~d  482 (661)
T PHA02917        408 YGCYNFYTYTYKKGLCDMSYACPILSTINICLPY---LKDINMIDKRGETLLHKAVRYNKQSLVSLLLE--SGSDVNIRS  482 (661)
T ss_pred             ccchhhhhhhhhhccchhhhhhhhHHHHHHHHHC---CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH--CcCCCCCCC
Confidence            3                       3455666663   36699999999999999998876655 77777  899999999


Q ss_pred             ccCCChHHHHhh
Q 009805          364 KKKISVKHIELY  375 (525)
Q Consensus       364 ~~g~t~l~~a~~  375 (525)
                      ..|.||+++|..
T Consensus       483 ~~G~T~L~~A~~  494 (661)
T PHA02917        483 NNGYTCIAIAIN  494 (661)
T ss_pred             CCCCCHHHHHHH
Confidence            999999999984

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.5e-40  Score=339.61  Aligned_cols=282  Identities=19%  Similarity=0.183  Sum_probs=144.6

Q ss_pred             CchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC---ChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCCh
Q 009805           52 GESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCG---RPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENT  128 (525)
Q Consensus        52 g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t  128 (525)
                      ++.+++++|++    .+.+++..+..|.||||+|+..|   +.+++++|++.|++               ++.++..|.|
T Consensus        25 ~~~~~v~~Ll~----~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad---------------in~~~~~g~T   85 (471)
T PHA03095         25 VTVEEVRRLLA----AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD---------------VNAPERCGFT   85 (471)
T ss_pred             CCHHHHHHHHH----cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC---------------CCCCCCCCCC
Confidence            45555555543    14444555555555555555555   55555555555554               3444555555


Q ss_pred             HhHHHHHcC-CHHHHHHHHhcCCCCCCCCCCCCchHHHHHH--HcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcC-
Q 009805          129 ALHEAVQCG-NLDAVKILMEAGPNFPYSANVNGETPLYMAA--ARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSY-  204 (525)
Q Consensus       129 ~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~-  204 (525)
                      |||+|+..| +.+++++|+++|++++ ..+..|.||||+|+  ..++.+++++|+++|++++..|..|.||||+|+..+ 
T Consensus        86 pLh~A~~~~~~~~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~  164 (471)
T PHA03095         86 PLHLYLYNATTLDVIKLLIKAGADVN-AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRN  164 (471)
T ss_pred             HHHHHHHcCCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            555555555 3555555555555544 34445555555555  333455555555555555555555555555555433 


Q ss_pred             -CHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHc--CChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCH--HHHH
Q 009805          205 -AADVVEKLLAKKRHLTRERDDCGWTPLHHSAYL--GLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHE--SLAG  279 (525)
Q Consensus       205 -~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~--~~v~  279 (525)
                       +.+++++|++.+++. +..|..|.||||+++..  ++.++++.|++.|.++ ...+. .|.||||+|+..|+.  .+++
T Consensus       165 ~~~~iv~~Ll~~g~~~-~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~-~~~d~-~g~tpLh~Aa~~~~~~~~~v~  241 (471)
T PHA03095        165 ANVELLRLLIDAGADV-YAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDP-AATDM-LGNTPLHSMATGSSCKRSLVL  241 (471)
T ss_pred             CCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCC-cccCC-CCCCHHHHHHhcCCchHHHHH
Confidence             345555555555553 22355555555555543  3445555555555554 22333 455555555555543  3455


Q ss_pred             HHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCC
Q 009805          280 TIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGD  358 (525)
Q Consensus       280 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d  358 (525)
                      .|++.+.+ ++.+|..|+||||+|+..|+.++++.|++.   ++++|.+|.+|+||||+|+..+...+ ..|+.  .+.+
T Consensus       242 ~ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~---gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~--~~~~  315 (471)
T PHA03095        242 PLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIAL---GADINAVSSDGNTPLSLMVRNNNGRAVRAALA--KNPS  315 (471)
T ss_pred             HHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCCHHHHHHHHH--hCCC
Confidence            55555554 455555555555555555555555555552   23455555555555555555554333 44444  3444


Q ss_pred             hHHH
Q 009805          359 TQAV  362 (525)
Q Consensus       359 ~~~~  362 (525)
                      ++..
T Consensus       316 ~~~~  319 (471)
T PHA03095        316 AETV  319 (471)
T ss_pred             HHHH
Confidence            4433

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.3e-40  Score=336.67  Aligned_cols=283  Identities=19%  Similarity=0.201  Sum_probs=247.9

Q ss_pred             HHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcC---CHHHHHHHHhcCCCCCCCCCCC
Q 009805           83 HAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG---NLDAVKILMEAGPNFPYSANVN  159 (525)
Q Consensus        83 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~  159 (525)
                      ..++..++.++|++|++.|++               ++.++..|.||||+|+..+   +.+++++|+++|++++ ..+..
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~---------------vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin-~~~~~   82 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGAD---------------VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVN-APERC   82 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCC---------------cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCC-CCCCC
Confidence            356677899999999999988               6778999999999999999   9999999999999987 66779


Q ss_pred             CchHHHHHHHcC-CHHHHHHHHHhcCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHH
Q 009805          160 GETPLYMAAARG-SKKMVAEILEKCSSAAHDGPNGKTALHAAV--NSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY  236 (525)
Q Consensus       160 g~tpL~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~  236 (525)
                      |.||||+|+..| +.+++++|+++|++++.++..|.||||+|+  ..++.+++++|++.|++ ++.+|..|.||||+|+.
T Consensus        83 g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~  161 (471)
T PHA03095         83 GFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLLK  161 (471)
T ss_pred             CCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHH
Confidence            999999999999 599999999999999999999999999999  55689999999999998 68899999999999998


Q ss_pred             cC--ChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhc--CCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCH--H
Q 009805          237 LG--LKDITALLLEFDGSSALILDKDRKMTALLMAASQ--GHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHE--S  310 (525)
Q Consensus       237 ~g--~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~--g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~--~  310 (525)
                      .+  +.+++++|+++|++.... +. .|.||||.|+..  ++.++++.|++.+.+ ++.+|..|+||||+|+..++.  .
T Consensus       162 ~~~~~~~iv~~Ll~~g~~~~~~-d~-~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~~~~~~~  238 (471)
T PHA03095        162 SRNANVELLRLLIDAGADVYAV-DD-RFRSLLHHHLQSFKPRARIVRELIRAGCD-PAATDMLGNTPLHSMATGSSCKRS  238 (471)
T ss_pred             cCCCCHHHHHHHHHcCCCCccc-CC-CCCCHHHHHHHHCCCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCchHH
Confidence            76  579999999999988554 44 799999999975  788999999999998 788999999999999999875  4


Q ss_pred             HHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHhccCCChHHHHhhcCCCccchhhhHHH
Q 009805          311 KLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVNKKKISVKHIELYGCPELQGEIQGLSE  389 (525)
Q Consensus       311 ~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~~~~~~~~  389 (525)
                      ++..+++.   +.++|.+|..|+||||+|+..|...+ ..|++  .|+|++.+|.+|+||+++|...+     ..+.+..
T Consensus       239 ~v~~ll~~---g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~--~gad~n~~~~~g~tpl~~A~~~~-----~~~~v~~  308 (471)
T PHA03095        239 LVLPLLIA---GISINARNRYGQTPLHYAAVFNNPRACRRLIA--LGADINAVSSDGNTPLSLMVRNN-----NGRAVRA  308 (471)
T ss_pred             HHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHHHHhC-----CHHHHHH
Confidence            66677764   46699999999999999999976555 88888  89999999999999999999654     4444444


Q ss_pred             HhhcCC
Q 009805          390 NIGRGQ  395 (525)
Q Consensus       390 ~l~~~~  395 (525)
                      ++..+.
T Consensus       309 LL~~~~  314 (471)
T PHA03095        309 ALAKNP  314 (471)
T ss_pred             HHHhCC
Confidence            554433

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.7e-39  Score=334.24  Aligned_cols=324  Identities=16%  Similarity=0.157  Sum_probs=252.5

Q ss_pred             hHHHHHHH--cCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCc--hhhHHHHHHHHHhCCccccccCCCC
Q 009805            3 PKLYEAAT--NGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGE--SVSTKFVEQILEICPSLLIQTNAKG   78 (525)
Q Consensus         3 ~~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~--~~~~~~ll~~~~~~~~~l~~~~~~g   78 (525)
                      ++||.|+.  .++.+++++|+++|++.+.++..|.||||+|+..       |+  .+++++|++.    +.+++.+|..|
T Consensus       179 TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~-------g~~~~eIVklLLe~----GADVN~kD~~G  247 (764)
T PHA02716        179 GILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLIT-------GNVCASVIKKIIEL----GGDMDMKCVNG  247 (764)
T ss_pred             cHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-------CCCCHHHHHHHHHc----CCCCCCCCCCC
Confidence            68998864  4678999999999999999999999999999999       85  4899999773    78889999999


Q ss_pred             CcHHHHHH---HcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhH---HHHHcCCHHHHHHHHhcCCCC
Q 009805           79 DSPLHAAA---KCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH---EAVQCGNLDAVKILMEAGPNF  152 (525)
Q Consensus        79 ~tpLh~A~---~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh---~A~~~g~~~~v~~Ll~~~~~~  152 (525)
                      .||||.|+   ..++.++++.|++.+....                 .....+++|   .|++.|+.+++++|+++|+++
T Consensus       248 ~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~-----------------~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI  310 (764)
T PHA02716        248 MSPIMTYIINIDNINPEITNIYIESLDGNK-----------------VKNIPMILHSYITLARNIDISVVYSFLQPGVKL  310 (764)
T ss_pred             CCHHHHHHHhhhccCHHHHHHHHHhccccc-----------------cccchhhhHHHHHHHHcCCHHHHHHHHhCCCce
Confidence            99999986   4679999999998753310                 011123344   478999999999999999998


Q ss_pred             CCCCCCCCchHHHHHHH--cCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHH--------------cCCHHHHHHHHHhc
Q 009805          153 PYSANVNGETPLYMAAA--RGSKKMVAEILEKCSSAAHDGPNGKTALHAAVN--------------SYAADVVEKLLAKK  216 (525)
Q Consensus       153 ~~~~~~~g~tpL~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~--------------~~~~~~~~~Ll~~~  216 (525)
                      + ..|..|+||||+|+.  .++.+++++|+++|++++.+|..|+||||+|+.              .++.+++++|+++|
T Consensus       311 N-~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G  389 (764)
T PHA02716        311 H-YKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG  389 (764)
T ss_pred             e-ccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC
Confidence            7 678899999999874  468999999999999999999999999999875              36899999999999


Q ss_pred             CcCcccCCCCCCcHHHH----HHHcCChhHHHHHhhcCCCcchh--------cccCCCCcHHHHHHhcCCHHHH------
Q 009805          217 RHLTRERDDCGWTPLHH----SAYLGLKDITALLLEFDGSSALI--------LDKDRKMTALLMAASQGHESLA------  278 (525)
Q Consensus       217 ~~~~~~~d~~g~tpL~~----A~~~g~~~~v~~Ll~~~~~~~~~--------~~~~~g~tpL~~A~~~g~~~~v------  278 (525)
                      ++ ++.+|..|+||||.    |...++.+++++|++.+......        ........++|.++..+..+..      
T Consensus       390 AD-In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~  468 (764)
T PHA02716        390 AD-ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEY  468 (764)
T ss_pred             CC-CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhh
Confidence            98 68899999999994    23356799999999976532110        0111122335566655443322      


Q ss_pred             ------------HHHHhhCCCccccccCCCCchhHHHHhcCCH-----HHHHHHhhCccccccccccCCCCChHHHHHHh
Q 009805          279 ------------GTIIAHYPECYDLVDNGGWNVLHFLMVSLHE-----SKLKRLLKDPLYKSFIDEKNEMGNTPLHILAT  341 (525)
Q Consensus       279 ------------~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~-----~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~  341 (525)
                                  ..++..+.. .+..|..|+||||+|+..++.     +++++|++.   ++++|.+|++|+||||+|++
T Consensus       469 ~~~~~~~~~~v~~~~ii~~~n-vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~---GADIN~~d~~G~TPLh~A~~  544 (764)
T PHA02716        469 EPYDSTKIHDVYHCAIIERYN-NAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSI---QYNINIPTKNGVTPLMLTMR  544 (764)
T ss_pred             hhccccccchhhHHHHHhhcc-ccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhC---CCCCcccCCCCCCHHHHHHH
Confidence                        222233333 566789999999999999876     455899984   46699999999999999999


Q ss_pred             cCch------hHHHHHHHhCCCChHHH
Q 009805          342 LSAR------TCNEIVRQIGKGDTQAV  362 (525)
Q Consensus       342 ~~~~------~~~~ll~~~~~~d~~~~  362 (525)
                      .+..      .++.|++  .+++++..
T Consensus       545 ~g~~~~~~~eIvk~LL~--~ga~~~~~  569 (764)
T PHA02716        545 NNRLSGHQWYIVKNILD--KRPNVDIV  569 (764)
T ss_pred             cCCccccHHHHHHHHHh--cCCCcchH
Confidence            8753      4588888  55555544

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.2e-39  Score=331.18  Aligned_cols=284  Identities=22%  Similarity=0.267  Sum_probs=254.6

Q ss_pred             CchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhH
Q 009805           52 GESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH  131 (525)
Q Consensus        52 g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh  131 (525)
                      ...++++++++    .+......+..+.||||.|+..|+.++|++|++.|++               ++..+..|.||||
T Consensus        13 ~~~~~~~~~~~----~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~---------------~~~~~~~~~t~L~   73 (480)
T PHA03100         13 IKVKNIKYIIM----EDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGAD---------------INSSTKNNSTPLH   73 (480)
T ss_pred             HHHHHHHHHHh----cCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCC---------------CCCccccCcCHHH
Confidence            34456666644    3566667888999999999999999999999999987               5567888999999


Q ss_pred             H-----HHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHH--HcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcC
Q 009805          132 E-----AVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAA--ARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSY  204 (525)
Q Consensus       132 ~-----A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  204 (525)
                      +     |+..|+.+++++|+++|++++ ..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus        74 ~~~~~~a~~~~~~~iv~~Ll~~ga~i~-~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  152 (480)
T PHA03100         74 YLSNIKYNLTDVKEIVKLLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESN  152 (480)
T ss_pred             HHHHHHHHhhchHHHHHHHHHCCCCCC-CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Confidence            9     999999999999999999985 78889999999999  999999999999999999999999999999999999


Q ss_pred             --CHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCC------CcHHHHHHhcCC--
Q 009805          205 --AADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK------MTALLMAASQGH--  274 (525)
Q Consensus       205 --~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g------~tpL~~A~~~g~--  274 (525)
                        +.+++++|++.|++ ++.++..|.||||+|+..|+.+++++|+++|++... .+. .|      .||||.|+..|+  
T Consensus       153 ~~~~~iv~~Ll~~g~d-in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~-~~~-~~~~~~~~~t~l~~a~~~~~~~  229 (480)
T PHA03100        153 KIDLKILKLLIDKGVD-INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINA-GDI-ETLLFTIFETPLHIAACYNEIT  229 (480)
T ss_pred             CChHHHHHHHHHCCCC-cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccC-CCC-CCCcHHHHHhHHHHHHHhCcCc
Confidence              99999999999998 578888999999999999999999999999998743 333 45      899999999999  


Q ss_pred             HHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHH
Q 009805          275 ESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQ  353 (525)
Q Consensus       275 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~  353 (525)
                      .+++++|++.|.+ ++.+|..|+||||+|+..++.++++.|++.+   +++|.+|..|.||||+|+..+...+ ..|++ 
T Consensus       230 ~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g---ad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~-  304 (480)
T PHA03100        230 LEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDLG---ANPNLVNKYGDTPLHIAILNNNKEIFKLLLN-  304 (480)
T ss_pred             HHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCccCCCCCcHHHHHHHhCCHHHHHHHHh-
Confidence            9999999999988 7889999999999999999999999999854   4699999999999999999986655 88888 


Q ss_pred             hCCCChHHHhc
Q 009805          354 IGKGDTQAVNK  364 (525)
Q Consensus       354 ~~~~d~~~~n~  364 (525)
                       .|++++..+.
T Consensus       305 -~g~~i~~i~~  314 (480)
T PHA03100        305 -NGPSIKTIIE  314 (480)
T ss_pred             -cCCCHHHHHH
Confidence             7778777554

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.6e-38  Score=318.14  Aligned_cols=349  Identities=14%  Similarity=0.121  Sum_probs=268.3

Q ss_pred             hhhhhhhhccccc-cccCCCCchhhhhhhcccccccCC---chhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC--
Q 009805           16 PFNGIAKDNLRSI-VTHNNKHTVLHVNIARQSLKNKEG---ESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCG--   89 (525)
Q Consensus        16 ~v~~ll~~~~~~~-~~~~~g~t~Lh~A~~~~~~~~~~g---~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g--   89 (525)
                      .++..++.-.+.+ ..|+.|+||||+|+..       |   +.+++++|+++    +.+++.+|..|.||||+|+..+  
T Consensus        22 ~~~~~~~~~~~in~~kd~~G~TaLh~A~~~-------~~~~~~eivklLLs~----GAdin~kD~~G~TPLh~Aa~~~~~   90 (672)
T PHA02730         22 KIKLEIETCHNLSKHIDRRGNNALHCYVSN-------KCDTDIKIVRLLLSR----GVERLCRNNEGLTPLGVYSKRKYV   90 (672)
T ss_pred             HHHHHHHHhcchhhhcCCCCCcHHHHHHHc-------CCcCcHHHHHHHHhC----CCCCcccCCCCCChHHHHHHcCCC
Confidence            3555666533333 6777899999999999       7   49999999874    8889999999999999999976  


Q ss_pred             ChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHH--cCCHHHHHHHHh-cCCCCCCCCC----CCCch
Q 009805           90 RPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQ--CGNLDAVKILME-AGPNFPYSAN----VNGET  162 (525)
Q Consensus        90 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~-~~~~~~~~~~----~~g~t  162 (525)
                      +.++|++|++.|+...             .+..+..+.+|||.++.  +++.+++++|++ .+.+++...+    ..|.+
T Consensus        91 ~~eIv~~Ll~~~~~~~-------------~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~  157 (672)
T PHA02730         91 KSQIVHLLISSYSNAS-------------NELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLV  157 (672)
T ss_pred             cHHHHHHHHhcCCCCC-------------cccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchh
Confidence            7999999999976521             23467778999999988  889999999997 5556553322    47899


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCC--------CCCCCCCcHHHHHH------HcCCHHHHHHHHHhcCcCcccCCCCCC
Q 009805          163 PLYMAAARGSKKMVAEILEKCSSAA--------HDGPNGKTALHAAV------NSYAADVVEKLLAKKRHLTRERDDCGW  228 (525)
Q Consensus       163 pL~~A~~~g~~~~v~~Ll~~~~~~~--------~~~~~g~t~L~~A~------~~~~~~~~~~Ll~~~~~~~~~~d~~g~  228 (525)
                      |++++...++.++|++|+++|++++        ..++...|.||+++      ..++.|++++|+++|++ ++.+|..|+
T Consensus       158 ~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad-IN~kd~~G~  236 (672)
T PHA02730        158 DIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS-IHGRDEGGS  236 (672)
T ss_pred             hhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC-CCCCCCCCC
Confidence            9999999999999999999999984        22334456667554      34678999999999998 699999999


Q ss_pred             cHHHH--HHHcCChhHHHHHhh--------------------------------cCCCcchh------------------
Q 009805          229 TPLHH--SAYLGLKDITALLLE--------------------------------FDGSSALI------------------  256 (525)
Q Consensus       229 tpL~~--A~~~g~~~~v~~Ll~--------------------------------~~~~~~~~------------------  256 (525)
                      ||||+  +...|+.|++++|++                                +|.+....                  
T Consensus       237 TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  316 (672)
T PHA02730        237 LPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSIT  316 (672)
T ss_pred             CHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccc
Confidence            99995  555677999999999                                55554220                  


Q ss_pred             cccCCCCc---------------------HHHHHHhcC---CHHHHHHHHhhCCCccccccCCCCchhHHHHhcCC----
Q 009805          257 LDKDRKMT---------------------ALLMAASQG---HESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLH----  308 (525)
Q Consensus       257 ~~~~~g~t---------------------pL~~A~~~g---~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~----  308 (525)
                      ..+..|.+                     .||.-...+   +.++++.|+++|++ ++. +..|+||||+|+..+.    
T Consensus       317 ~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAd-IN~-k~~G~TpLH~Aa~~nnn~i~  394 (672)
T PHA02730        317 SYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGAT-MDK-TTDNNYPLHDYFVNNNNIVD  394 (672)
T ss_pred             cccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCC-CCc-CCCCCcHHHHHHHHcCCcch
Confidence            01113433                     566666655   58999999999999 565 4789999999998875    


Q ss_pred             HHHHHHHhhCccccccccccCCCCChHHHH---HHhcCc-----h-----hHHHHHHHhCCCChHHHhccCCChHHHHhh
Q 009805          309 ESKLKRLLKDPLYKSFIDEKNEMGNTPLHI---LATLSA-----R-----TCNEIVRQIGKGDTQAVNKKKISVKHIELY  375 (525)
Q Consensus       309 ~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~---A~~~~~-----~-----~~~~ll~~~~~~d~~~~n~~g~t~l~~a~~  375 (525)
                      .++++.|++.+.. .++|.+|..|.||||.   |...+.     .     .+..|+.  .|+|++.+|+.|+|||++|..
T Consensus       395 ~eIvelLIs~Ga~-~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs--~GADINakD~~G~TPLh~Aa~  471 (672)
T PHA02730        395 VNVVRFIVENNGH-MAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK--YMDDIDMIDNENKTLLYYAVD  471 (672)
T ss_pred             HHHHHHHHHcCCC-ccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh--cccchhccCCCCCCHHHHHHH
Confidence            7999999986421 3589999999999994   332221     1     2478888  899999999999999999995


Q ss_pred             cCCCccchhhhHHHHhhcCCCCCc
Q 009805          376 GCPELQGEIQGLSENIGRGQYPKG  399 (525)
Q Consensus       376 ~~~~~~~~~~~~~~~l~~~~~~~~  399 (525)
                      ..     ..+.+..++..|..+..
T Consensus       472 ~~-----~~eive~LI~~GAdIN~  490 (672)
T PHA02730        472 VN-----NIQFARRLLEYGASVNT  490 (672)
T ss_pred             hC-----CHHHHHHHHHCCCCCCC
Confidence            43     44555555666665443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.4e-39  Score=329.38  Aligned_cols=279  Identities=19%  Similarity=0.201  Sum_probs=254.1

Q ss_pred             cCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHH-----H
Q 009805           11 NGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHA-----A   85 (525)
Q Consensus        11 ~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~-----A   85 (525)
                      ....++++++++.+-.....+..+.||||.|++.       |+.+++++|++.    +..++..+..+.||||+     |
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~-------~~~~ivk~Ll~~----g~~~~~~~~~~~t~L~~~~~~~a   80 (480)
T PHA03100         12 IIKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEA-------RNIDVVKILLDN----GADINSSTKNNSTPLHYLSNIKY   80 (480)
T ss_pred             HHHHHHHHHHHhcCccchhhhcccchhhhhhhcc-------CCHHHHHHHHHc----CCCCCCccccCcCHHHHHHHHHH
Confidence            3445677888876555556677899999999999       999999999773    67778889999999999     9


Q ss_pred             HHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHH--HcCCHHHHHHHHhcCCCCCCCCCCCCchH
Q 009805           86 AKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV--QCGNLDAVKILMEAGPNFPYSANVNGETP  163 (525)
Q Consensus        86 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp  163 (525)
                      +..|+.+++++|++.|++               ++..|..|.||||+|+  ..|+.+++++|+++|++++ ..+..|.||
T Consensus        81 ~~~~~~~iv~~Ll~~ga~---------------i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~-~~~~~g~t~  144 (480)
T PHA03100         81 NLTDVKEIVKLLLEYGAN---------------VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVN-IKNSDGENL  144 (480)
T ss_pred             HhhchHHHHHHHHHCCCC---------------CCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCC-ccCCCCCcH
Confidence            999999999999999987               5678999999999999  9999999999999999976 678899999


Q ss_pred             HHHHHHcC--CHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCC------CcHHHHHH
Q 009805          164 LYMAAARG--SKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCG------WTPLHHSA  235 (525)
Q Consensus       164 L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g------~tpL~~A~  235 (525)
                      ||+|+..|  +.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.|++ ++..+..|      .||||.|+
T Consensus       145 L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~a~  223 (480)
T PHA03100        145 LHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD-INAGDIETLLFTIFETPLHIAA  223 (480)
T ss_pred             HHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC-ccCCCCCCCcHHHHHhHHHHHH
Confidence            99999999  99999999999999999999999999999999999999999999998 56777777      89999999


Q ss_pred             HcCC--hhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHH
Q 009805          236 YLGL--KDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLK  313 (525)
Q Consensus       236 ~~g~--~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~  313 (525)
                      ..|+  .+++++|+++|.+. +..+. .|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..++.++++
T Consensus       224 ~~~~~~~~iv~~Ll~~g~di-n~~d~-~g~TpL~~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpl~~A~~~~~~~iv~  300 (480)
T PHA03100        224 CYNEITLEVVNYLLSYGVPI-NIKDV-YGFTPLHYAVYNNNPEFVKYLLDLGAN-PNLVNKYGDTPLHIAILNNNKEIFK  300 (480)
T ss_pred             HhCcCcHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHhCCHHHHH
Confidence            9999  99999999999887 44555 799999999999999999999999997 7889999999999999999999999


Q ss_pred             HHhhCcc
Q 009805          314 RLLKDPL  320 (525)
Q Consensus       314 ~ll~~~~  320 (525)
                      .|++.+.
T Consensus       301 ~Ll~~g~  307 (480)
T PHA03100        301 LLLNNGP  307 (480)
T ss_pred             HHHhcCC
Confidence            9998654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=4e-40  Score=344.31  Aligned_cols=354  Identities=25%  Similarity=0.300  Sum_probs=253.0

Q ss_pred             hHHHHHHHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHH
Q 009805            3 PKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPL   82 (525)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpL   82 (525)
                      ++||.||..+.+++++.++.+|+++...++.|.+|||.|+..       |+.+++.++++.    +...+..+..|.||+
T Consensus       211 tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~-------g~~~i~~~l~~~----ga~~~~~~vr~~tpl  279 (1143)
T KOG4177|consen  211 TPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFM-------GHLDIVKLLLQH----GASVNVSTVRGETPL  279 (1143)
T ss_pred             CchhhhccccccceeeeeeeccCcCCcccccCccHHHHHHhc-------cchhHHHHHHhc----ccccCcccccccCcc
Confidence            456677777777777777777666666666677777777777       777777666552    445556666667777


Q ss_pred             HHHHHcCChhHHHHHHHhhhcCCh---------------------------------hHhhhh-----------hhhHH-
Q 009805           83 HAAAKCGRPAVVKVLIEFAKKQPT---------------------------------AMKCCA-----------KTAWQ-  117 (525)
Q Consensus        83 h~A~~~g~~~~v~~Ll~~~~~~~~---------------------------------~~~~~~-----------~~~~~-  117 (525)
                      |.|++.+..+++++|++.+++...                                 .-..+.           ..... 
T Consensus       280 h~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~  359 (1143)
T KOG4177|consen  280 HMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGA  359 (1143)
T ss_pred             hhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHH
Confidence            777777777777777666654311                                 000000           00000 


Q ss_pred             ------HhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCC
Q 009805          118 ------MLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP  191 (525)
Q Consensus       118 ------~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~  191 (525)
                            --...+..|.||+|.|+..|..+++++++.+|.+.+ ..+..|.||||.|+..++.++++.+++++++++..+.
T Consensus       360 l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~-~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~  438 (1143)
T KOG4177|consen  360 LLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPN-SAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAK  438 (1143)
T ss_pred             hhccccccCcccccCCcchhhhcccCchhHHHhhhhccCCcc-cCCCCCcceeeehhhccCcceEEEEeccCCChhhHhh
Confidence                  012234556677777777777777777777777643 6666777777777777777777777777777777777


Q ss_pred             CCCcHHHHHHHcC-CHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHH
Q 009805          192 NGKTALHAAVNSY-AADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAA  270 (525)
Q Consensus       192 ~g~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~  270 (525)
                      .|+||+|.|+..+ ..+....+++.+.+ ++.....|.||||.|+..|+.++++.|++.++.....  ...+.+++|.|.
T Consensus       439 lG~T~lhvaa~~g~~~~~~~~l~~~g~~-~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~--~~~~l~~lhla~  515 (1143)
T KOG4177|consen  439 LGYTPLHVAAKKGRYLQIARLLLQYGAD-PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLD--AKKGLTPLHLAA  515 (1143)
T ss_pred             cCCChhhhhhhcccHhhhhhhHhhcCCC-cchhccccCcchhhhhccCCchHHHHhhhcCCccCcc--chhccchhhhhh
Confidence            7777888777777 66777777777666 5677777888888888888888888888776443222  225777888888


Q ss_pred             hcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HH
Q 009805          271 SQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NE  349 (525)
Q Consensus       271 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~  349 (525)
                      ..+...+++.+++++.. ++.++..|.||||+|+.+|+.++|++|++   .+++++.+|+.|+||||.|+..|...| .+
T Consensus       516 ~~~~v~~~~~l~~~ga~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe---~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~L  591 (1143)
T KOG4177|consen  516 DEDTVKVAKILLEHGAN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLE---HGADVNAKDKLGYTPLHQAAQQGHNDIAEL  591 (1143)
T ss_pred             hhhhHHHHHHHhhcCCc-eehhcccccchHHHHHhcCCchHHHHhhh---CCccccccCCCCCChhhHHHHcChHHHHHH
Confidence            88888888888888877 67788899999999999999999999998   446689999999999999999997777 66


Q ss_pred             HHHHhCCCChHHHhccCCChHHHHhhcC
Q 009805          350 IVRQIGKGDTQAVNKKKISVKHIELYGC  377 (525)
Q Consensus       350 ll~~~~~~d~~~~n~~g~t~l~~a~~~~  377 (525)
                      |++  .|+++|..+.+|.|||++|...+
T Consensus       592 Llk--~GA~vna~d~~g~TpL~iA~~lg  617 (1143)
T KOG4177|consen  592 LLK--HGASVNAADLDGFTPLHIAVRLG  617 (1143)
T ss_pred             HHH--cCCCCCcccccCcchhHHHHHhc
Confidence            777  89999999999999999998654

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.4e-38  Score=321.73  Aligned_cols=331  Identities=19%  Similarity=0.121  Sum_probs=258.5

Q ss_pred             HHHHHHHcCCcchhhhhhhh----ccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCC
Q 009805            4 KLYEAATNGEIEPFNGIAKD----NLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGD   79 (525)
Q Consensus         4 ~L~~A~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~   79 (525)
                      .|+.++..++.+-+...++.    +-........+.||||+|++.       |+.+++++|++.    +.+++.+|.+|.
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~-------g~~e~vk~Ll~~----gadvn~~d~~g~   71 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEA-------RNLDVVKSLLTR----GHNVNQPDHRDL   71 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHc-------CCHHHHHHHHHC----CCCCCCCCCCCC
Confidence            47788888886555554443    111112233678999999999       999999999773    678889999999


Q ss_pred             cHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q 009805           80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN  159 (525)
Q Consensus        80 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  159 (525)
                      ||||+||..|+.++++.|++.+...                 ....+.++++.|+..++.++++.|+..+.+.....+  
T Consensus        72 TpLh~A~~~g~~~~v~~Ll~~~~~~-----------------~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~--  132 (477)
T PHA02878         72 TPLHIICKEPNKLGMKEMIRSINKC-----------------SVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID--  132 (477)
T ss_pred             CHHHHHHHCccHhHHHHHHHHHhcc-----------------ccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc--
Confidence            9999999999999999999987541                 124678999999999999999999987644221111  


Q ss_pred             CchHHHHHHHc--CCHHHHHHHHHhcCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHH
Q 009805          160 GETPLYMAAAR--GSKKMVAEILEKCSSAAHDGPN-GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY  236 (525)
Q Consensus       160 g~tpL~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~  236 (525)
                       ...+......  .+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.
T Consensus       133 -~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~  210 (477)
T PHA02878        133 -LVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN-VNIPDKTNNSPLHHAVK  210 (477)
T ss_pred             -HHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH
Confidence             1111111112  2356999999999999999998 99999999999999999999999998 68899999999999999


Q ss_pred             cCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhc-CCHHHHHHHHhhCCCccccccC-CCCchhHHHHhcCCHHHHHH
Q 009805          237 LGLKDITALLLEFDGSSALILDKDRKMTALLMAASQ-GHESLAGTIIAHYPECYDLVDN-GGWNVLHFLMVSLHESKLKR  314 (525)
Q Consensus       237 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~~~~  314 (525)
                      .|+.+++++|+++|++. +..+. .|.||||+|+.. ++.+++++|+++|++ ++..+. .|+||||+|  .++.++++.
T Consensus       211 ~~~~~iv~~Ll~~ga~i-n~~d~-~g~TpLh~A~~~~~~~~iv~~Ll~~gad-vn~~~~~~g~TpLh~A--~~~~~~v~~  285 (477)
T PHA02878        211 HYNKPIVHILLENGAST-DARDK-CGNTPLHISVGYCKDYDILKLLLEHGVD-VNAKSYILGLTALHSS--IKSERKLKL  285 (477)
T ss_pred             hCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHhcCCHHHHHHHHHcCCC-CCccCCCCCCCHHHHH--ccCHHHHHH
Confidence            99999999999999987 44555 799999999976 789999999999998 566664 799999999  567889999


Q ss_pred             HhhCccccccccccCCCCChHHHHHHhcC-c-hhHHHHHHH---hCCCChHHHhccCCChHHHHh
Q 009805          315 LLKDPLYKSFIDEKNEMGNTPLHILATLS-A-RTCNEIVRQ---IGKGDTQAVNKKKISVKHIEL  374 (525)
Q Consensus       315 ll~~~~~~~~in~~d~~G~T~Lh~A~~~~-~-~~~~~ll~~---~~~~d~~~~n~~g~t~l~~a~  374 (525)
                      |++.   ++++|.+|..|+||||+|+..+ . ..+..++..   ....+++.+|..|..+-.-..
T Consensus       286 Ll~~---gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n~~~i  347 (477)
T PHA02878        286 LLEY---GADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDNMDCI  347 (477)
T ss_pred             HHHC---CCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHHHHHHH
Confidence            9984   4679999999999999999753 2 223444432   134556666766766544443

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.4e-38  Score=321.72  Aligned_cols=291  Identities=19%  Similarity=0.159  Sum_probs=238.3

Q ss_pred             hhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHH
Q 009805           55 VSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV  134 (525)
Q Consensus        55 ~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~  134 (525)
                      ++.+.+.. +...+......+..+.||||.|++.|+.++|++|++.|++               ++.+|..|.||||+|+
T Consensus        15 ~i~~~i~~-~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gad---------------vn~~d~~g~TpLh~A~   78 (477)
T PHA02878         15 TILKYIEY-IDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHN---------------VNQPDHRDLTPLHIIC   78 (477)
T ss_pred             HHHHHHHH-HhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCC---------------CCCCCCCCCCHHHHHH
Confidence            44444433 4444444455667899999999999999999999999987               6778999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcC--CHHHHHHH
Q 009805          135 QCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSY--AADVVEKL  212 (525)
Q Consensus       135 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~L  212 (525)
                      ..|+.++++.|++.+.....   ..+.+|++.|+..++.+++++|+..+.+.....  ....+......+  ..+++++|
T Consensus        79 ~~g~~~~v~~Ll~~~~~~~~---~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~--~~~~~~~~~~~~~~~~~iv~~L  153 (477)
T PHA02878         79 KEPNKLGMKEMIRSINKCSV---FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTI--DLVYIDKKSKDDIIEAEITKLL  153 (477)
T ss_pred             HCccHhHHHHHHHHHhcccc---ccchhhHHHHHHcCCHHHHHHHHhCcccCcccC--cHHHHhhccchhhHHHHHHHHH
Confidence            99999999999998765432   567899999999999999999998764422110  011111111122  34699999


Q ss_pred             HHhcCcCcccCCCC-CCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCcccc
Q 009805          213 LAKKRHLTRERDDC-GWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDL  291 (525)
Q Consensus       213 l~~~~~~~~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~  291 (525)
                      ++.|++ ++..+.. |.||||+|+..|+.+++++|+++|++. +..+. .|.||||.|+..|+.++++.|++.+++ ++.
T Consensus       154 l~~gad-in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~  229 (477)
T PHA02878        154 LSYGAD-INMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDK-TNNSPLHHAVKHYNKPIVHILLENGAS-TDA  229 (477)
T ss_pred             HHcCCC-CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHhCCHHHHHHHHHcCCC-CCC
Confidence            999999 5778877 999999999999999999999999987 44555 799999999999999999999999998 788


Q ss_pred             ccCCCCchhHHHHhc-CCHHHHHHHhhCccccccccccCC-CCChHHHHHHhcCchhHHHHHHHhCCCChHHHhccCCCh
Q 009805          292 VDNGGWNVLHFLMVS-LHESKLKRLLKDPLYKSFIDEKNE-MGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISV  369 (525)
Q Consensus       292 ~d~~g~t~Lh~A~~~-~~~~~~~~ll~~~~~~~~in~~d~-~G~T~Lh~A~~~~~~~~~~ll~~~~~~d~~~~n~~g~t~  369 (525)
                      +|..|+||||+|+.. ++.++++.|++.   ++++|.++. .|.||||+|+ .....+..|++  .|+|++.+|..|.||
T Consensus       230 ~d~~g~TpLh~A~~~~~~~~iv~~Ll~~---gadvn~~~~~~g~TpLh~A~-~~~~~v~~Ll~--~gadin~~d~~g~Tp  303 (477)
T PHA02878        230 RDKCGNTPLHISVGYCKDYDILKLLLEH---GVDVNAKSYILGLTALHSSI-KSERKLKLLLE--YGADINSLNSYKLTP  303 (477)
T ss_pred             CCCCCCCHHHHHHHhcCCHHHHHHHHHc---CCCCCccCCCCCCCHHHHHc-cCHHHHHHHHH--CCCCCCCcCCCCCCH
Confidence            999999999999976 689999999985   456888886 8999999994 33455688888  899999999999999


Q ss_pred             HHHHhhc
Q 009805          370 KHIELYG  376 (525)
Q Consensus       370 l~~a~~~  376 (525)
                      +++|...
T Consensus       304 L~~A~~~  310 (477)
T PHA02878        304 LSSAVKQ  310 (477)
T ss_pred             HHHHHHH
Confidence            9999863

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-37  Score=320.85  Aligned_cols=346  Identities=15%  Similarity=0.081  Sum_probs=261.7

Q ss_pred             cchhhhhhhhccccccccCCCCchhhhh---hhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCC
Q 009805           14 IEPFNGIAKDNLRSIVTHNNKHTVLHVN---IARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGR   90 (525)
Q Consensus        14 ~~~v~~ll~~~~~~~~~~~~g~t~Lh~A---~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~   90 (525)
                      ++.++.|+.++......|++|.||||+|   +..       |+.+++++|++    .+.+++.++..|.||||.|+..|+
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~-------~~~~~v~~Ll~----~ga~v~~~~~~g~TpL~~Aa~~g~   80 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHC-------NNVEVVKLLLD----SGTNPLHKNWRQLTPLEEYTNSRH   80 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhc-------CcHHHHHHHHH----CCCCccccCCCCCCHHHHHHHcCC
Confidence            4567888877776667788999999997   445       77999999976    377778899999999999999999


Q ss_pred             hh----HHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHH
Q 009805           91 PA----VVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYM  166 (525)
Q Consensus        91 ~~----~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  166 (525)
                      .+    +++.|++.+..               .+..+  ..+++|.|+.+|+.++|++|+++|++++ ..|..|.||||.
T Consensus        81 ~~v~~~~~~~Ll~~~~~---------------~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin-~~d~~g~T~L~~  142 (661)
T PHA02917         81 VKVNKDIAMALLEATGY---------------SNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLS-VKCENHRSVIEN  142 (661)
T ss_pred             hhHHHHHHHHHHhccCC---------------CCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCC-ccCCCCccHHHH
Confidence            65    45677765432               11222  2377888999999999999999999987 778899999996


Q ss_pred             HH--HcCCHHHHHHHHHhcCCCCCCCC---CC-----------CcHHHHHHH-----------cCCHHHHHHHHHhcCcC
Q 009805          167 AA--ARGSKKMVAEILEKCSSAAHDGP---NG-----------KTALHAAVN-----------SYAADVVEKLLAKKRHL  219 (525)
Q Consensus       167 A~--~~g~~~~v~~Ll~~~~~~~~~~~---~g-----------~t~L~~A~~-----------~~~~~~~~~Ll~~~~~~  219 (525)
                      |+  ..|+.+++++|+++|++++..|.   .|           .||||+|+.           .++.+++++|++.|++ 
T Consensus       143 ~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-  221 (661)
T PHA02917        143 YVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-  221 (661)
T ss_pred             HHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-
Confidence            54  57899999999999999986543   33           599999986           4689999999999999 


Q ss_pred             cccCCCCCCcHHHHHHHcCCh--hHHHHHhhcCCCcch---hcccCCCCcHHHHHHhc---------CCHHHHHHHHhhC
Q 009805          220 TRERDDCGWTPLHHSAYLGLK--DITALLLEFDGSSAL---ILDKDRKMTALLMAASQ---------GHESLAGTIIAHY  285 (525)
Q Consensus       220 ~~~~d~~g~tpL~~A~~~g~~--~~v~~Ll~~~~~~~~---~~~~~~g~tpL~~A~~~---------g~~~~v~~Ll~~~  285 (525)
                      ++.+|.+|.||||+|+..|+.  +++++|++ |.+...   ..+. .+.+|+|+|+.-         .+.++++.|++.|
T Consensus       222 vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~-~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~G  299 (661)
T PHA02917        222 PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDL-TCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENG  299 (661)
T ss_pred             cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCc-ccccchHHHHHHHhhccccccchHHHHHHHHhCC
Confidence            689999999999999999985  79999985 665432   2222 577889999831         1779999999999


Q ss_pred             CCcc------ccc------------cCCCCchhHHHH---hcCC--HHHHHHHhhCccc---------------------
Q 009805          286 PECY------DLV------------DNGGWNVLHFLM---VSLH--ESKLKRLLKDPLY---------------------  321 (525)
Q Consensus       286 ~~~~------~~~------------d~~g~t~Lh~A~---~~~~--~~~~~~ll~~~~~---------------------  321 (525)
                      ++..      +..            +..+.+++|.+.   ..|.  .++++.|++.+..                     
T Consensus       300 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~  379 (661)
T PHA02917        300 KPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMK  379 (661)
T ss_pred             CCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHH
Confidence            7521      111            223445555444   3555  4588888876542                     


Q ss_pred             ------cccccccCCCCChHHHHHHhcCc------------------------hhHHHHHHHhCCCChHHHhccCCChHH
Q 009805          322 ------KSFIDEKNEMGNTPLHILATLSA------------------------RTCNEIVRQIGKGDTQAVNKKKISVKH  371 (525)
Q Consensus       322 ------~~~in~~d~~G~T~Lh~A~~~~~------------------------~~~~~ll~~~~~~d~~~~n~~g~t~l~  371 (525)
                            +++++.+|.+|+||||.|++.+.                        ..+..|+.  .|+|++.+|..|.||||
T Consensus       380 ~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~--~GAdIN~kd~~G~TpLh  457 (661)
T PHA02917        380 YLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLP--YLKDINMIDKRGETLLH  457 (661)
T ss_pred             HHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHH--CCCCCCCCCCCCcCHHH
Confidence                  24456667789999999975321                        12367777  89999999999999999


Q ss_pred             HHhhcCCCccchhhhHHHHhhcCCCCC
Q 009805          372 IELYGCPELQGEIQGLSENIGRGQYPK  398 (525)
Q Consensus       372 ~a~~~~~~~~~~~~~~~~~l~~~~~~~  398 (525)
                      +|....     ..+.+..++..+..+.
T Consensus       458 ~Aa~~~-----~~~~v~~Ll~~GAdin  479 (661)
T PHA02917        458 KAVRYN-----KQSLVSLLLESGSDVN  479 (661)
T ss_pred             HHHHcC-----CHHHHHHHHHCcCCCC
Confidence            998543     4455555666655443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.7e-38  Score=332.09  Aligned_cols=358  Identities=23%  Similarity=0.275  Sum_probs=253.1

Q ss_pred             HHHHHHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHH
Q 009805            5 LYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHA   84 (525)
Q Consensus         5 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~   84 (525)
                      ++.|+..+..+.++.++...++....+.+|.||+|.|+..       +..++++.++.    .+.++...|..|-||||.
T Consensus       180 ~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~tpl~~a~~~-------nri~~~eLll~----~gadv~a~d~~gl~~lh~  248 (1143)
T KOG4177|consen  180 LHVAAHCGHARVAKLLLDKKADPNASALNGFTPLHIACKK-------NRIKVVELLLK----HGADVSAKDESGLTPLHV  248 (1143)
T ss_pred             hhHHhhcchHHHHhhhhcccCCccccccCCCCchhhhccc-------cccceeeeeee----ccCcCCcccccCccHHHH
Confidence            5889999999999999999999988998999999999999       99999998876    488999999999999999


Q ss_pred             HHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHH
Q 009805           85 AAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPL  164 (525)
Q Consensus        85 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL  164 (525)
                      |+..|+.+++.+|+.+++.               .+..+..|.||+|.|++.+..+++++|+++|+++. ..+....||+
T Consensus       249 a~~~g~~~i~~~l~~~ga~---------------~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~-~~~~~~kt~l  312 (1143)
T KOG4177|consen  249 AAFMGHLDIVKLLLQHGAS---------------VNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVL-AKARDDQTPL  312 (1143)
T ss_pred             HHhccchhHHHHHHhcccc---------------cCcccccccCcchhhhccchhhhHhhhhccCcccc-cccccccChh
Confidence            9999999999999999987               45567777788888888877787777777776654 4445555555


Q ss_pred             HHHHHcCCHHHHHHHHHhcCCCCCCCCCCC---------------------------------cHHHHHHHcCCHHHHHH
Q 009805          165 YMAAARGSKKMVAEILEKCSSAAHDGPNGK---------------------------------TALHAAVNSYAADVVEK  211 (525)
Q Consensus       165 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~---------------------------------t~L~~A~~~~~~~~~~~  211 (525)
                      |.|...|+.++++++++.++.++..+..|.                                 +|+|.|+..|..++++.
T Consensus       313 ~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~L  392 (1143)
T KOG4177|consen  313 HIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVEL  392 (1143)
T ss_pred             hhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHh
Confidence            555555555555555555544444443333                                 34444444444444444


Q ss_pred             HHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcC-CHHHHHHHHhhCCCccc
Q 009805          212 LLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQG-HESLAGTIIAHYPECYD  290 (525)
Q Consensus       212 Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g-~~~~v~~Ll~~~~~~~~  290 (525)
                      ++..+.+ ++..+..|.||||.|+..++..+++.+++++++. +..+. .|+||+|+|+..| ..++...+++.+.+ .+
T Consensus       393 ll~~ga~-~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~-~~~~~-lG~T~lhvaa~~g~~~~~~~~l~~~g~~-~n  468 (1143)
T KOG4177|consen  393 LLEAGAD-PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP-NAKAK-LGYTPLHVAAKKGRYLQIARLLLQYGAD-PN  468 (1143)
T ss_pred             hhhccCC-cccCCCCCcceeeehhhccCcceEEEEeccCCCh-hhHhh-cCCChhhhhhhcccHhhhhhhHhhcCCC-cc
Confidence            4444444 3444444444444444444444444444444444 22233 4567777777666 55666666666655 56


Q ss_pred             cccCCCCchhHHHHhcCCHHHHHHHhhCcc------------------------------ccccccccCCCCChHHHHHH
Q 009805          291 LVDNGGWNVLHFLMVSLHESKLKRLLKDPL------------------------------YKSFIDEKNEMGNTPLHILA  340 (525)
Q Consensus       291 ~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~------------------------------~~~~in~~d~~G~T~Lh~A~  340 (525)
                      ..-..|.||||.|+..|+.+.+..+++...                              .+++++.++..|+||||.|+
T Consensus       469 ~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~  548 (1143)
T KOG4177|consen  469 AVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAV  548 (1143)
T ss_pred             hhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHH
Confidence            666667777777777777666666655320                              12467889999999999999


Q ss_pred             hcCchhH-HHHHHHhCCCChHHHhccCCChHHHHhhcCCCccchhhhHHHHhhcCCCCCcc
Q 009805          341 TLSARTC-NEIVRQIGKGDTQAVNKKKISVKHIELYGCPELQGEIQGLSENIGRGQYPKGV  400 (525)
Q Consensus       341 ~~~~~~~-~~ll~~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~  400 (525)
                      ..|+..+ +.|++  .++|++.+++.|+||||.|+..     ++.+.+.-+++.+..|...
T Consensus       549 ~~g~v~~VkfLLe--~gAdv~ak~~~G~TPLH~Aa~~-----G~~~i~~LLlk~GA~vna~  602 (1143)
T KOG4177|consen  549 HYGNVDLVKFLLE--HGADVNAKDKLGYTPLHQAAQQ-----GHNDIAELLLKHGASVNAA  602 (1143)
T ss_pred             hcCCchHHHHhhh--CCccccccCCCCCChhhHHHHc-----ChHHHHHHHHHcCCCCCcc
Confidence            9997665 88888  9999999999999999999954     4666666667776665543

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-36  Score=311.23  Aligned_cols=277  Identities=15%  Similarity=0.129  Sum_probs=227.6

Q ss_pred             cCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC-
Q 009805           11 NGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCG-   89 (525)
Q Consensus        11 ~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g-   89 (525)
                      ..+.+++++|++.|++++..+ +|.||||.++..     ..++.+++++|++.    +.+++.++ .+.||||.|+..+ 
T Consensus        13 ~~~~~~v~~LL~~GadvN~~~-~g~t~l~~~~~~-----~~~~~~iv~~Ll~~----GAdvn~~~-~~~tpL~~a~~~~~   81 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEEY-RGNSILLLYLKR-----KDVKIKIVKLLIDN----GADVNYKG-YIETPLCAVLRNRE   81 (494)
T ss_pred             cCcHHHHHHHHHcCCCccccc-CCCCHHHHHHhc-----CCCChHHHHHHHHc----CCCccCCC-CCCCcHHHHHhccC
Confidence            578999999999999998874 899998765544     01478999999773    67777665 5789999988754 


Q ss_pred             -----ChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCc
Q 009805           90 -----RPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC---GNLDAVKILMEAGPNFPYSANVNGE  161 (525)
Q Consensus        90 -----~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~  161 (525)
                           +.+++++|++.|++               ++.+|..|.||||.|+..   |+.+++++|+++|++++...+..|.
T Consensus        82 ~~~~~~~~iv~~Ll~~Gad---------------in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~  146 (494)
T PHA02989         82 ITSNKIKKIVKLLLKFGAD---------------INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGY  146 (494)
T ss_pred             cchhhHHHHHHHHHHCCCC---------------CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCC
Confidence                 46799999999988               677899999999988765   6789999999999998447788999


Q ss_pred             hHHHHHHHc--CCHHHHHHHHHhcCCCCC-CCCCCCcHHHHHHHcC----CHHHHHHHHHhcCcCcccCCCCCCcHHHHH
Q 009805          162 TPLYMAAAR--GSKKMVAEILEKCSSAAH-DGPNGKTALHAAVNSY----AADVVEKLLAKKRHLTRERDDCGWTPLHHS  234 (525)
Q Consensus       162 tpL~~A~~~--g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~----~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A  234 (525)
                      ||||+|+..  ++.+++++|+++|++++. .+..|.||||.|++.+    +.+++++|+++|++ .+..|..+.||||.+
T Consensus       147 tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~-vn~~~~~~~t~l~~~  225 (494)
T PHA02989        147 NLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN-IETNNNGSESVLESF  225 (494)
T ss_pred             CHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC-ccccCCccccHHHHH
Confidence            999998764  588999999999999888 6788999999987754    88999999999988 577788899999987


Q ss_pred             HHcC------ChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCC
Q 009805          235 AYLG------LKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLH  308 (525)
Q Consensus       235 ~~~g------~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  308 (525)
                      +..+      ..+++++|+. +++. +..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++
T Consensus       226 ~~~~~~~~~~~~~il~~l~~-~adv-n~~d~-~G~TpL~~Aa~~~~~~~v~~LL~~Gad-in~~d~~G~TpL~~A~~~~~  301 (494)
T PHA02989        226 LDNNKILSKKEFKVLNFILK-YIKI-NKKDK-KGFNPLLISAKVDNYEAFNYLLKLGDD-IYNVSKDGDTVLTYAIKHGN  301 (494)
T ss_pred             HHhchhhcccchHHHHHHHh-CCCC-CCCCC-CCCCHHHHHHHhcCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCC
Confidence            6543      4677777665 4554 44555 688999999999999999999999888 78888999999999999999


Q ss_pred             HHHHHHHhhC
Q 009805          309 ESKLKRLLKD  318 (525)
Q Consensus       309 ~~~~~~ll~~  318 (525)
                      .++++.|++.
T Consensus       302 ~~iv~~LL~~  311 (494)
T PHA02989        302 IDMLNRILQL  311 (494)
T ss_pred             HHHHHHHHhc
Confidence            9998888874

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.7e-36  Score=281.29  Aligned_cols=234  Identities=19%  Similarity=0.165  Sum_probs=181.3

Q ss_pred             ccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCCh
Q 009805           49 NKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENT  128 (525)
Q Consensus        49 ~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t  128 (525)
                      +..++.+++++|+++    +.  ..+|.+|.||||+|+..|+.+++++|++.+++               ++..  +|.|
T Consensus         7 ~~~~~~~~~~~Lis~----~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~---------------~n~~--d~~T   63 (284)
T PHA02791          7 NTWKSKQLKSFLSSK----DA--FKADVHGHSALYYAIADNNVRLVCTLLNAGAL---------------KNLL--ENEF   63 (284)
T ss_pred             cccCHHHHHHHHHhC----CC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCC---------------CcCC--CCCC
Confidence            344778888888652    22  35788888888888888888888888888765               2222  3678


Q ss_pred             HhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCC-cHHHHHHHcCCHH
Q 009805          129 ALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGK-TALHAAVNSYAAD  207 (525)
Q Consensus       129 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~~~~~  207 (525)
                      |||+|+..|+.+++++|+++|++++ ..|..|+||||+|+..|+.+++++|+++|++++.++..|. ||||+|+..|+.+
T Consensus        64 pLh~Aa~~g~~eiV~lLL~~Gadvn-~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~e  142 (284)
T PHA02791         64 PLHQAATLEDTKIVKILLFSGMDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS  142 (284)
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHH
Confidence            8888888888888888888888876 6777888888888888888888888888888888777774 7888888888888


Q ss_pred             HHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcH-HHHHHhcCCHHHHHHHHhhCC
Q 009805          208 VVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTA-LLMAASQGHESLAGTIIAHYP  286 (525)
Q Consensus       208 ~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tp-L~~A~~~g~~~~v~~Ll~~~~  286 (525)
                      ++++|+++++...+.  ..|.||||+|+..|+.+++++|+++|+++ +..+. .|.|| ||+|+..|+.+++++|+++|+
T Consensus       143 ivk~LL~~~~~~~d~--~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~-n~~d~-~g~t~~L~~Aa~~~~~e~v~lLl~~Ga  218 (284)
T PHA02791        143 IVSYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMTST-NTNNS-LLFIPDIKLAIDNKDLEMLQALFKYDI  218 (284)
T ss_pred             HHHHHHhcCCccccc--ccCccHHHHHHHcCCHHHHHHHHHCCCCC-CcccC-CCCChHHHHHHHcCCHHHHHHHHHCCC
Confidence            888888876542211  24788888888888888888888888876 44444 56655 888888888888888888888


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHhhC
Q 009805          287 ECYDLVDNGGWNVLHFLMVSLHESKLKRLLKD  318 (525)
Q Consensus       287 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~  318 (525)
                      + ++..|.+| ++|      +..|++++|++.
T Consensus       219 ~-in~~~~~~-~~l------~~~e~~~~ll~~  242 (284)
T PHA02791        219 N-IYSVNLEN-VLL------DDAEIAKMIIEK  242 (284)
T ss_pred             C-CccCcccC-ccC------CCHHHHHHHHHh
Confidence            8 57777744 554      777888888874

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.2e-36  Score=306.75  Aligned_cols=277  Identities=18%  Similarity=0.144  Sum_probs=232.1

Q ss_pred             CchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHc--CChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChH
Q 009805           52 GESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKC--GRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTA  129 (525)
Q Consensus        52 g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~  129 (525)
                      ...+++++|++.    +.+++.. .+|.||||.++..  ++.++|++|++.|++               ++.++ .+.||
T Consensus        14 ~~~~~v~~LL~~----GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAd---------------vn~~~-~~~tp   72 (494)
T PHA02989         14 VDKNALEFLLRT----GFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGAD---------------VNYKG-YIETP   72 (494)
T ss_pred             CcHHHHHHHHHc----CCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCC---------------ccCCC-CCCCc
Confidence            889999999773    6777777 6799999876654  378999999999998               45454 57899


Q ss_pred             hHHHHHcC------CHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHc---CCHHHHHHHHHhcCCC-CCCCCCCCcHHHH
Q 009805          130 LHEAVQCG------NLDAVKILMEAGPNFPYSANVNGETPLYMAAAR---GSKKMVAEILEKCSSA-AHDGPNGKTALHA  199 (525)
Q Consensus       130 Lh~A~~~g------~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~  199 (525)
                      ||.|+.++      +.+++++|+++|++++ ..+..|.||||.|+..   |+.+++++|+++|+++ +.+|..|.||||+
T Consensus        73 L~~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~  151 (494)
T PHA02989         73 LCAVLRNREITSNKIKKIVKLLLKFGADIN-LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHM  151 (494)
T ss_pred             HHHHHhccCcchhhHHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHH
Confidence            99998764      4789999999999987 6788999999988765   6899999999999999 7899999999999


Q ss_pred             HHHc--CCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcC----ChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhc-
Q 009805          200 AVNS--YAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG----LKDITALLLEFDGSSALILDKDRKMTALLMAASQ-  272 (525)
Q Consensus       200 A~~~--~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g----~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~-  272 (525)
                      |+..  ++.+++++|++.|+++....+..|.||||.|+..+    +.+++++|+++|++. +..+. .+.+|||.++.. 
T Consensus       152 a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v-n~~~~-~~~t~l~~~~~~~  229 (494)
T PHA02989        152 YLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI-ETNNN-GSESVLESFLDNN  229 (494)
T ss_pred             HHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc-cccCC-ccccHHHHHHHhc
Confidence            8864  58999999999999954436788999999998764    899999999999987 44444 688999987754 


Q ss_pred             -----CCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH
Q 009805          273 -----GHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC  347 (525)
Q Consensus       273 -----g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~  347 (525)
                           +..+++++|++ +++ ++.+|..|+||||+|+..++.++++.|++.   ++++|.+|..|+||||+|+..+...+
T Consensus       230 ~~~~~~~~~il~~l~~-~ad-vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~---Gadin~~d~~G~TpL~~A~~~~~~~i  304 (494)
T PHA02989        230 KILSKKEFKVLNFILK-YIK-INKKDKKGFNPLLISAKVDNYEAFNYLLKL---GDDIYNVSKDGDTVLTYAIKHGNIDM  304 (494)
T ss_pred             hhhcccchHHHHHHHh-CCC-CCCCCCCCCCHHHHHHHhcCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHcCCHHH
Confidence                 35678887665 566 788999999999999999999999999984   46799999999999999999987665


Q ss_pred             -HHHHHHhCCC
Q 009805          348 -NEIVRQIGKG  357 (525)
Q Consensus       348 -~~ll~~~~~~  357 (525)
                       ..|++..++.
T Consensus       305 v~~LL~~~p~~  315 (494)
T PHA02989        305 LNRILQLKPGK  315 (494)
T ss_pred             HHHHHhcCCCh
Confidence             6777744433

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.3e-36  Score=279.89  Aligned_cols=236  Identities=19%  Similarity=0.162  Sum_probs=205.2

Q ss_pred             HHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHc
Q 009805            9 ATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKC   88 (525)
Q Consensus         9 ~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~   88 (525)
                      =.+++.+.+++|++.|.+  .+|.+|.||||+|+..       |+.+++++|++.    +.+.+..  +|.||||+|+..
T Consensus         7 ~~~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~-------g~~eiv~~Ll~~----ga~~n~~--d~~TpLh~Aa~~   71 (284)
T PHA02791          7 NTWKSKQLKSFLSSKDAF--KADVHGHSALYYAIAD-------NNVRLVCTLLNA----GALKNLL--ENEFPLHQAATL   71 (284)
T ss_pred             cccCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHc-------CCHHHHHHHHHC----cCCCcCC--CCCCHHHHHHHC
Confidence            346788999999998876  4787999999999999       999999999763    3444444  478999999999


Q ss_pred             CChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-chHHHHH
Q 009805           89 GRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNG-ETPLYMA  167 (525)
Q Consensus        89 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A  167 (525)
                      |+.++|++|++.+++               ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..| .||||+|
T Consensus        72 g~~eiV~lLL~~Gad---------------vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin-~~~~~g~~TpL~~A  135 (284)
T PHA02791         72 EDTKIVKILLFSGMD---------------DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHA  135 (284)
T ss_pred             CCHHHHHHHHHCCCC---------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCCCCcHHHHHH
Confidence            999999999999987               66789999999999999999999999999999987 456666 5999999


Q ss_pred             HHcCCHHHHHHHHHhcCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcH-HHHHHHcCChhHHHH
Q 009805          168 AARGSKKMVAEILEKCSSAAHDG-PNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTP-LHHSAYLGLKDITAL  245 (525)
Q Consensus       168 ~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp-L~~A~~~g~~~~v~~  245 (525)
                      +..|+.+++++|++++++.  .| ..|.||||+|+.+|+.+++++|++++++ ++.+|..|.|| ||+|+..|+.+++++
T Consensus       136 a~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-~n~~d~~g~t~~L~~Aa~~~~~e~v~l  212 (284)
T PHA02791        136 VMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDLEMLQA  212 (284)
T ss_pred             HHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCcccCCCCChHHHHHHHcCCHHHHHH
Confidence            9999999999999987543  22 3589999999999999999999999998 67888889987 999999999999999


Q ss_pred             HhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCC
Q 009805          246 LLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPE  287 (525)
Q Consensus       246 Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  287 (525)
                      |+++|++. +..+.  +.+||      ++.|++++|+++..+
T Consensus       213 Ll~~Ga~i-n~~~~--~~~~l------~~~e~~~~ll~~~~~  245 (284)
T PHA02791        213 LFKYDINI-YSVNL--ENVLL------DDAEIAKMIIEKHVE  245 (284)
T ss_pred             HHHCCCCC-ccCcc--cCccC------CCHHHHHHHHHhhhh
Confidence            99999988 44444  33555      899999999998866

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-35  Score=298.94  Aligned_cols=243  Identities=20%  Similarity=0.223  Sum_probs=198.2

Q ss_pred             CCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhh
Q 009805           34 KHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAK  113 (525)
Q Consensus        34 g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  113 (525)
                      .+++||.|++.       |+.+++++|++.    +.+++..+..|.||||+|+..|+.+++++|++.|++          
T Consensus         2 ~~~~L~~A~~~-------g~~~iv~~Ll~~----g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----------   60 (413)
T PHA02875          2 DQVALCDAILF-------GELDIARRLLDI----GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI----------   60 (413)
T ss_pred             CchHHHHHHHh-------CCHHHHHHHHHC----CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----------
Confidence            46788888888       889998888763    566677777888999999998999999999888876          


Q ss_pred             hhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCC
Q 009805          114 TAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG  193 (525)
Q Consensus       114 ~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g  193 (525)
                           .+..+.++.||||+|+..|+.++++.|++.|+......+..|.||||+|+..|+.+++++|+++|++++.++..|
T Consensus        61 -----~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g  135 (413)
T PHA02875         61 -----PDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDK  135 (413)
T ss_pred             -----ccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Confidence                 344567788899999999999999999988887665666778899999999899999999999888888888888


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcC
Q 009805          194 KTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQG  273 (525)
Q Consensus       194 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g  273 (525)
                      .||||+|+..|+.+++++|++.+++ .+.+|..|.||||+|+..|+.+++++|+++|+++... +...+.||+|+|+..|
T Consensus       136 ~tpLh~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~-~~~~~~t~l~~A~~~~  213 (413)
T PHA02875        136 FSPLHLAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYF-GKNGCVAALCYAIENN  213 (413)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcC-CCCCCchHHHHHHHcC
Confidence            8999999988889999999888887 5778888888888888888888888888888887443 3324568888888888


Q ss_pred             CHHHHHHHHhhCCCcccc---ccCCCCchhHHHHh
Q 009805          274 HESLAGTIIAHYPECYDL---VDNGGWNVLHFLMV  305 (525)
Q Consensus       274 ~~~~v~~Ll~~~~~~~~~---~d~~g~t~Lh~A~~  305 (525)
                      +.+++++|+++|++ ++.   .+..+.||+++++.
T Consensus       214 ~~~iv~~Ll~~gad-~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        214 KIDIVRLFIKRGAD-CNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             CHHHHHHHHHCCcC-cchHhhcCCCchHHHHHHHh
Confidence            88888888888887 333   35667788877654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.3e-36  Score=278.92  Aligned_cols=218  Identities=28%  Similarity=0.344  Sum_probs=190.3

Q ss_pred             HHHHHcCCcchhhhhhhhcc-----ccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCcccc-----ccC
Q 009805            6 YEAATNGEIEPFNGIAKDNL-----RSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLI-----QTN   75 (525)
Q Consensus         6 ~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~-----~~~   75 (525)
                      ..|++.|++..+..|+.+.-     +......+|.|||-+|+++       ||.++|++|++++...+..-.     -..
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRn-------GH~~vVeyLle~~~a~~e~~GsV~FDge~   81 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARN-------GHADVVEYLLEHCRASPEQGGSVRFDGET   81 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhc-------CcHHHHHHHHHHhcCCccCCceEEeCCcc
Confidence            47899999999988876521     1112344889999999999       999999999886544443322     234


Q ss_pred             CCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCC
Q 009805           76 AKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYS  155 (525)
Q Consensus        76 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  155 (525)
                      ..|-+||..|+..||.++|+.|+++++.               +|.......|||-.||.-|+.++||+|+++|+|+. .
T Consensus        82 IegappLWaAsaAGHl~vVk~L~~~ga~---------------VN~tT~TNStPLraACfDG~leivKyLvE~gad~~-I  145 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLEVVKLLLRRGAS---------------VNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPE-I  145 (615)
T ss_pred             cCCCchhhHHhccCcHHHHHHHHHhcCc---------------cccccccCCccHHHHHhcchhHHHHHHHHcCCCCc-c
Confidence            5688899999999999999999999987               56667778899999999999999999999999987 8


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHH
Q 009805          156 ANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSA  235 (525)
Q Consensus       156 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~  235 (525)
                      .|..|.|.|++||..||.+++++|++.|+|++.++..|.|+||.|++.|+.|++++|++++..  -..|..|.|||..|+
T Consensus       146 anrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~--i~~d~~GmtPL~~Aa  223 (615)
T KOG0508|consen  146 ANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAK--IDVDGHGMTPLLLAA  223 (615)
T ss_pred             cccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCce--eeecCCCCchHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999987  357778999999999


Q ss_pred             HcCChhHHHHHhh
Q 009805          236 YLGLKDITALLLE  248 (525)
Q Consensus       236 ~~g~~~~v~~Ll~  248 (525)
                      ..|+.++|+.|++
T Consensus       224 ~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  224 VTGHTDIVERLLQ  236 (615)
T ss_pred             hhcchHHHHHHhc
Confidence            9999999999884

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.8e-35  Score=294.15  Aligned_cols=243  Identities=21%  Similarity=0.229  Sum_probs=219.9

Q ss_pred             CChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCC
Q 009805          126 ENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYA  205 (525)
Q Consensus       126 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  205 (525)
                      .+++||.|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPN-FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence            4789999999999999999999999987 567789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhC
Q 009805          206 ADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHY  285 (525)
Q Consensus       206 ~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  285 (525)
                      .+++++|++.++...+..+..|.||||+|+..|+.+++++|+++|+++ ...+. .|.||||+|+..|+.+++++|++++
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~-~g~tpLh~A~~~~~~~~v~~Ll~~g  158 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNT-DKFSPLHLAVMMGDIKGIELLIDHK  158 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999998876777888999999999999999999999999987 44444 6999999999999999999999999


Q ss_pred             CCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCC-hHHHHHHhcCchhH-HHHHHHhCCCChHHH-
Q 009805          286 PECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGN-TPLHILATLSARTC-NEIVRQIGKGDTQAV-  362 (525)
Q Consensus       286 ~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~-T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~-  362 (525)
                      ++ ++.+|..|+||||+|+..|+.++++.|++.+   ++++..+..|. ||+|+|+..+...+ ..|++  .|+|++.. 
T Consensus       159 ~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~g---a~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~--~gad~n~~~  232 (413)
T PHA02875        159 AC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDSG---ANIDYFGKNGCVAALCYAIENNKIDIVRLFIK--RGADCNIMF  232 (413)
T ss_pred             CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC---CCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH--CCcCcchHh
Confidence            98 7889999999999999999999999999854   55888888875 89999999986665 88888  78888765 


Q ss_pred             --hccCCChHHHHhhcC
Q 009805          363 --NKKKISVKHIELYGC  377 (525)
Q Consensus       363 --n~~g~t~l~~a~~~~  377 (525)
                        +..|.||+++....+
T Consensus       233 ~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        233 MIEGEECTILDMICNMC  249 (413)
T ss_pred             hcCCCchHHHHHHHhhc
Confidence              778999999987544

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.7e-36  Score=241.72  Aligned_cols=207  Identities=25%  Similarity=0.263  Sum_probs=151.9

Q ss_pred             CChHhHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCchHHHHHHHcCCHHHHHHHHH-hcCCCCCCCCCCCcHHHHHHHc
Q 009805          126 ENTALHEAVQCGNLDAVKILMEAGP-NFPYSANVNGETPLYMAAARGSKKMVAEILE-KCSSAAHDGPNGKTALHAAVNS  203 (525)
Q Consensus       126 g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~  203 (525)
                      +.++.+.++......-++.+++..+ .++...|.+|+||||+||..|+.+++.+|++ .+..++.+|..|+||||.|+..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            4567777777777777888888877 5666666688888888888888888888884 4466777788888888888888


Q ss_pred             CCHHHHHHHHHh-cCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHH
Q 009805          204 YAADVVEKLLAK-KRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTII  282 (525)
Q Consensus       204 ~~~~~~~~Ll~~-~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  282 (525)
                      |+.++++.|+.+ +++ ++..+..|.|+||||+..|+.+|+++|+++|+.+ ...|. .|.||||.|+..|..+++++|+
T Consensus        83 g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~-~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDK-QGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             CcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCChhhHHHHHHhcCCCC-ccccc-ccCchhHHHHhccchhhHHHHH
Confidence            888888888887 666 5777777888888888888888888888877655 55555 6777777777777777777777


Q ss_pred             hhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHH
Q 009805          283 AHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILA  340 (525)
Q Consensus       283 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~  340 (525)
                      ..++. ++..|+.|+||||.|...++.++...|++.+   ++++..|++| ||+..|+
T Consensus       160 ~~~a~-~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g---Ad~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  160 SQGAP-LNTQDKYGFTPLHHALAEGHPDVAVLLVRAG---ADTDREDKEG-TALRIAC  212 (226)
T ss_pred             hcCCC-CCcccccCccHHHHHHhccCchHHHHHHHhc---cceeeccccC-chHHHHH
Confidence            77755 5666666777777666666666666666633   4456666655 6655544

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-35  Score=240.66  Aligned_cols=173  Identities=28%  Similarity=0.315  Sum_probs=83.9

Q ss_pred             CCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHh-hhcCChhHhhh
Q 009805           33 NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCC  111 (525)
Q Consensus        33 ~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~  111 (525)
                      +|.||||+||..       |+.+++.+|++   ..+..++.+|..|.||||+||..|+.++|+.|+.+ +++        
T Consensus        37 D~Rt~LHwa~S~-------g~~eiv~fLls---q~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad--------   98 (226)
T KOG4412|consen   37 DGRTPLHWACSF-------GHVEIVYFLLS---QPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD--------   98 (226)
T ss_pred             cCCceeeeeeec-------CchhHHHHHHh---cCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC--------
Confidence            455555555555       55555555532   22233344444555555555555555555555544 333        


Q ss_pred             hhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCC
Q 009805          112 AKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP  191 (525)
Q Consensus       112 ~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~  191 (525)
                             ++..+..|.|+||||+..|..+|+++|+++|+.+. .+|..|.||||.|+..|+.+++++|++.|+.+|.+|.
T Consensus        99 -------vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~-~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk  170 (226)
T KOG4412|consen   99 -------VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR-IKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDK  170 (226)
T ss_pred             -------cceecCCCcceehhhhcCChhhHHHHHHhcCCCCc-ccccccCchhHHHHhccchhhHHHHHhcCCCCCcccc
Confidence                   34444455555555555555555555555554433 4445555555555555555555555555555555555


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHH
Q 009805          192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHH  233 (525)
Q Consensus       192 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~  233 (525)
                      .|+||||.|+..++.++...|++++++ ....|+.| ||+-.
T Consensus       171 ~G~TpL~~al~e~~~d~a~lLV~~gAd-~~~edke~-t~~~~  210 (226)
T KOG4412|consen  171 YGFTPLHHALAEGHPDVAVLLVRAGAD-TDREDKEG-TALRI  210 (226)
T ss_pred             cCccHHHHHHhccCchHHHHHHHhccc-eeeccccC-chHHH
Confidence            555555555444455555555555544 23334434 44433

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.7e-34  Score=291.38  Aligned_cols=285  Identities=20%  Similarity=0.240  Sum_probs=234.4

Q ss_pred             CchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHc--CChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChH
Q 009805           52 GESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKC--GRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTA  129 (525)
Q Consensus        52 g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~  129 (525)
                      -..+.|+.|++.   +  ..+.. .++.|+++.+...  ++.++|++|++.|++               ++.+|..|.||
T Consensus        16 ~~~~~v~~ll~~---~--~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad---------------vn~~d~~g~Tp   74 (489)
T PHA02798         16 VKLSTVKLLIKS---C--NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGAN---------------VNGLDNEYSTP   74 (489)
T ss_pred             ccHHHHHHHHhc---C--Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCC---------------CCCCCCCCCCh
Confidence            456788888652   2  22222 4577887755544  478999999999998               67789999999


Q ss_pred             hHHHHHc-----CCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcC---CHHHHHHHHHhcCCCCCCCCCCCcHHHHHH
Q 009805          130 LHEAVQC-----GNLDAVKILMEAGPNFPYSANVNGETPLYMAAARG---SKKMVAEILEKCSSAAHDGPNGKTALHAAV  201 (525)
Q Consensus       130 Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  201 (525)
                      ||.|+.+     ++.+++++|+++|++++ ..+..|.||||+|+..+   +.+++++|+++|++++.+|..|.||||+|+
T Consensus        75 L~~~~~n~~~~~~~~~iv~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~  153 (489)
T PHA02798         75 LCTILSNIKDYKHMLDIVKILIENGADIN-KKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYL  153 (489)
T ss_pred             HHHHHHhHHhHHhHHHHHHHHHHCCCCCC-CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHH
Confidence            9999864     67899999999999987 67889999999999876   789999999999999999999999999999


Q ss_pred             HcCC---HHHHHHHHHhcCcCcccCCCCCCcHHHHHHHc----CChhHHHHHhhcCCCcchhcccCCCCcHHH-------
Q 009805          202 NSYA---ADVVEKLLAKKRHLTRERDDCGWTPLHHSAYL----GLKDITALLLEFDGSSALILDKDRKMTALL-------  267 (525)
Q Consensus       202 ~~~~---~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~----g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~-------  267 (525)
                      +.++   .+++++|++.|++.....+..|.||||.++..    ++.+++++|+++|.+.. ..+. .|.++++       
T Consensus       154 ~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~-~~~~-~~~~~~~~~l~~l~  231 (489)
T PHA02798        154 QSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIIN-KENK-SHKKKFMEYLNSLL  231 (489)
T ss_pred             HcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcc-cCCc-cccchHHHHHHHHH
Confidence            9988   99999999999985433356799999998765    47899999999998873 3333 4667766       


Q ss_pred             HHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH
Q 009805          268 MAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC  347 (525)
Q Consensus       268 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~  347 (525)
                      .+...++.+++++|+. +.+ ++.+|..|+||||+|+.+++.+++++|++.   ++++|.+|..|+||||+|+..+...+
T Consensus       232 ~~~~~~~~~i~~~l~~-~~d-vN~~d~~G~TPL~~A~~~~~~~~v~~LL~~---GAdin~~d~~G~TpL~~A~~~~~~~i  306 (489)
T PHA02798        232 YDNKRFKKNILDFIFS-YID-INQVDELGFNPLYYSVSHNNRKIFEYLLQL---GGDINIITELGNTCLFTAFENESKFI  306 (489)
T ss_pred             hhcccchHHHHHHHHh-cCC-CCCcCcCCccHHHHHHHcCcHHHHHHHHHc---CCcccccCCCCCcHHHHHHHcCcHHH
Confidence            2445677888888776 466 889999999999999999999999999994   56799999999999999999986655


Q ss_pred             -HHHHHHhCCCChHHHhccCC
Q 009805          348 -NEIVRQIGKGDTQAVNKKKI  367 (525)
Q Consensus       348 -~~ll~~~~~~d~~~~n~~g~  367 (525)
                       ..+++  .+.+++.......
T Consensus       307 v~~lL~--~~~~~~~i~~~~~  325 (489)
T PHA02798        307 FNSILN--KKPNKNTISYTYY  325 (489)
T ss_pred             HHHHHc--cCCCHHHHHHHHH
Confidence             77777  7777776655443

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.7e-34  Score=290.19  Aligned_cols=275  Identities=13%  Similarity=0.143  Sum_probs=233.4

Q ss_pred             CcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHc----
Q 009805           13 EIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKC----   88 (525)
Q Consensus        13 ~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~----   88 (525)
                      +.+.|+.|++.+ +++... .+.|+++.+...     ..++.+++++|++.    +.+++.+|..|.||||.|+..    
T Consensus        17 ~~~~v~~ll~~~-~~~~~~-~~~~~~~~yl~~-----~~~~~~iv~~Ll~~----Gadvn~~d~~g~TpL~~~~~n~~~~   85 (489)
T PHA02798         17 KLSTVKLLIKSC-NPNEIV-NEYSIFQKYLQR-----DSPSTDIVKLFINL----GANVNGLDNEYSTPLCTILSNIKDY   85 (489)
T ss_pred             cHHHHHHHHhcC-Chhhhc-ccchHHHHHHhC-----CCCCHHHHHHHHHC----CCCCCCCCCCCCChHHHHHHhHHhH
Confidence            456899999764 332333 677877755443     12689999999773    778999999999999999864    


Q ss_pred             -CChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcC---CHHHHHHHHhcCCCCCCCCCCCCchHH
Q 009805           89 -GRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG---NLDAVKILMEAGPNFPYSANVNGETPL  164 (525)
Q Consensus        89 -g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~tpL  164 (525)
                       ++.+++++|++.|++               ++.+|.+|.||||+|+..+   +.+++++|+++|++++ ..|..|.|||
T Consensus        86 ~~~~~iv~~Ll~~Gad---------------iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~tpL  149 (489)
T PHA02798         86 KHMLDIVKILIENGAD---------------INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTT-LLDKDGFTML  149 (489)
T ss_pred             HhHHHHHHHHHHCCCC---------------CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc-ccCCCCCcHH
Confidence             678999999999998               7789999999999999886   7899999999999987 7889999999


Q ss_pred             HHHHHcCC---HHHHHHHHHhcCCCCCCC-CCCCcHHHHHHHc----CCHHHHHHHHHhcCcCcccCCCCCCcHHH----
Q 009805          165 YMAAARGS---KKMVAEILEKCSSAAHDG-PNGKTALHAAVNS----YAADVVEKLLAKKRHLTRERDDCGWTPLH----  232 (525)
Q Consensus       165 ~~A~~~g~---~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~----~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~----  232 (525)
                      |+|++.|+   .+++++|+++|++++..+ ..|.||||.++..    ++.+++++|+++|.+ ++..+..+.++++    
T Consensus       150 ~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~-i~~~~~~~~~~~~~~l~  228 (489)
T PHA02798        150 QVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI-INKENKSHKKKFMEYLN  228 (489)
T ss_pred             HHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC-cccCCccccchHHHHHH
Confidence            99999998   999999999999999874 5789999998764    479999999999998 5777888888876    


Q ss_pred             ---HHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCH
Q 009805          233 ---HSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHE  309 (525)
Q Consensus       233 ---~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  309 (525)
                         ++...++.+++++|+. +.+. +..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.
T Consensus       229 ~l~~~~~~~~~~i~~~l~~-~~dv-N~~d~-~G~TPL~~A~~~~~~~~v~~LL~~GAd-in~~d~~G~TpL~~A~~~~~~  304 (489)
T PHA02798        229 SLLYDNKRFKKNILDFIFS-YIDI-NQVDE-LGFNPLYYSVSHNNRKIFEYLLQLGGD-INIITELGNTCLFTAFENESK  304 (489)
T ss_pred             HHHhhcccchHHHHHHHHh-cCCC-CCcCc-CCccHHHHHHHcCcHHHHHHHHHcCCc-ccccCCCCCcHHHHHHHcCcH
Confidence               2344567888888776 4554 55555 799999999999999999999999999 789999999999999999999


Q ss_pred             HHHHHHhhCc
Q 009805          310 SKLKRLLKDP  319 (525)
Q Consensus       310 ~~~~~ll~~~  319 (525)
                      ++++.|++..
T Consensus       305 ~iv~~lL~~~  314 (489)
T PHA02798        305 FIFNSILNKK  314 (489)
T ss_pred             HHHHHHHccC
Confidence            9999999854

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.1e-33  Score=278.48  Aligned_cols=337  Identities=13%  Similarity=0.096  Sum_probs=258.7

Q ss_pred             ChHHHHHHHcCCcchh--hhhhhhccccccccCCCCchhhhhhhcccccccCCc-hhhHHHHHHHHHhCCccccccCCCC
Q 009805            2 EPKLYEAATNGEIEPF--NGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGE-SVSTKFVEQILEICPSLLIQTNAKG   78 (525)
Q Consensus         2 ~~~L~~A~~~g~~~~v--~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~-~~~~~~ll~~~~~~~~~l~~~~~~g   78 (525)
                      |.-|+..|+.=+++..  +.|++.|+++... .+|.||||.-..+       .+ ..-++.++.++    ...+..|.+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~t~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~n~~~   71 (631)
T PHA02792          4 DKILYDSCKTFNIDACSAQSLIESGANPLYE-YDGETPLKAYVTK-------KNNNIKNDVVILLL----SSVDYKNIND   71 (631)
T ss_pred             hhHHHhHhhccchhHHHHHHHHHcCCCcccc-cCCCccHHHHHhh-------hhhhHHHHHHHHHH----hCCCcCccCC
Confidence            4567777777766665  4588999999664 4888999987655       23 22333444432    2234688899


Q ss_pred             CcHHHHHH-HcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHH-cCCHHHHHHHHhcCCCCCC--
Q 009805           79 DSPLHAAA-KCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQ-CGNLDAVKILMEAGPNFPY--  154 (525)
Q Consensus        79 ~tpLh~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~~~--  154 (525)
                      .+|+|+-+ .+|+.|+|++|+++|++               ++.++..|.||+|+|+. .++.|++++|+++|++...  
T Consensus        72 ~~~~~~~~s~n~~lElvk~LI~~GAd---------------vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~  136 (631)
T PHA02792         72 FDIFEYLCSDNIDIELLKLLISKGLE---------------INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNI  136 (631)
T ss_pred             ccHHHHHHHhcccHHHHHHHHHcCCC---------------cccccCCCCcceeEeecCCCChHHHHHHHHCCCCccccc
Confidence            99998754 67899999999999998               66788889999999965 6999999999999976210  


Q ss_pred             ---------------------------------CCCCCCchHHHHHHHcC-------CHHHHHHHHHhcCCCCCCCCCCC
Q 009805          155 ---------------------------------SANVNGETPLYMAAARG-------SKKMVAEILEKCSSAAHDGPNGK  194 (525)
Q Consensus       155 ---------------------------------~~~~~g~tpL~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~g~  194 (525)
                                                       ..|..|.||||+|+.++       +.|+++.|+++|++++..|..|.
T Consensus       137 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~  216 (631)
T PHA02792        137 QYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREH  216 (631)
T ss_pred             ccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCC
Confidence                                             23446999999999999       89999999999999999999999


Q ss_pred             cHHHHHHHcC--CHHHHHHHHHhcCcCcc------------------cCCC-------CCCc------------------
Q 009805          195 TALHAAVNSY--AADVVEKLLAKKRHLTR------------------ERDD-------CGWT------------------  229 (525)
Q Consensus       195 t~L~~A~~~~--~~~~~~~Ll~~~~~~~~------------------~~d~-------~g~t------------------  229 (525)
                      ||||+|+.+.  +.|+++.|++.......                  ..|.       .|.+                  
T Consensus       217 t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~  296 (631)
T PHA02792        217 TTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIIS  296 (631)
T ss_pred             hHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHH
Confidence            9999999999  78899998874221000                  0000       0111                  


Q ss_pred             ------------HHHHHHHcC--ChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCC
Q 009805          230 ------------PLHHSAYLG--LKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNG  295 (525)
Q Consensus       230 ------------pL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~  295 (525)
                                  .||.-...+  +.+++++|+++|.+..    +.....+++.|+..|+.+++++|+++|++ ++..|.+
T Consensus       297 ~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~----r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~  371 (631)
T PHA02792        297 SILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY----RFKHINKYFQKFDNRDPKVVEYILKNGNV-VVEDDDN  371 (631)
T ss_pred             HHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc----cCCcchHHHHHHHcCCHHHHHHHHHcCCc-hhhhcCC
Confidence                        133444444  4688999999998763    11356789999999999999999999999 6777776


Q ss_pred             C--CchhHHHHhcCCHH---HHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHhccCCCh
Q 009805          296 G--WNVLHFLMVSLHES---KLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVNKKKISV  369 (525)
Q Consensus       296 g--~t~Lh~A~~~~~~~---~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n~~g~t~  369 (525)
                      |  .||||+|......+   +++.+++   .++++|.+|..|.||||+|+..+...+ ..|++  .|+|++.+|..|.||
T Consensus       372 g~~~TpLh~A~~n~~~~v~~IlklLIs---~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs--~GADIN~kD~~G~Tp  446 (631)
T PHA02792        372 IINIMPLFPTLSIHESDVLSILKLCKP---YIDDINKIDKHGRSILYYCIESHSVSLVEWLID--NGADINITTKYGSTC  446 (631)
T ss_pred             CCChhHHHHHHHhccHhHHHHHHHHHh---cCCccccccccCcchHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCCH
Confidence            5  69999987766654   3455555   335799999999999999999886655 77887  899999999999999


Q ss_pred             HHHHhh
Q 009805          370 KHIELY  375 (525)
Q Consensus       370 l~~a~~  375 (525)
                      +++|..
T Consensus       447 L~~A~~  452 (631)
T PHA02792        447 IGICVI  452 (631)
T ss_pred             HHHHHH
Confidence            999975

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=255.23  Aligned_cols=184  Identities=24%  Similarity=0.272  Sum_probs=165.8

Q ss_pred             hHHHHHHHcCCcchhhhhhhh-ccccc--------cccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccc
Q 009805            3 PKLYEAATNGEIEPFNGIAKD-NLRSI--------VTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQ   73 (525)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~-~~~~~--------~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~   73 (525)
                      ++|..||++|+.++|+||+++ ++++.        -...+|-+||..|+--       ||.++|+.|+++    +..++.
T Consensus        44 tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaA-------GHl~vVk~L~~~----ga~VN~  112 (615)
T KOG0508|consen   44 TPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAA-------GHLEVVKLLLRR----GASVND  112 (615)
T ss_pred             CceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhcc-------CcHHHHHHHHHh----cCcccc
Confidence            578899999999999999995 43322        2344788999999999       999999999774    577888


Q ss_pred             cCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCC
Q 009805           74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFP  153 (525)
Q Consensus        74 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  153 (525)
                      ...-..|||-.||.-|+.++|++|++++++               +++.|..|.|.||+|+..|+.+|+++|++.|++++
T Consensus       113 tT~TNStPLraACfDG~leivKyLvE~gad---------------~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn  177 (615)
T KOG0508|consen  113 TTRTNSTPLRAACFDGHLEIVKYLVEHGAD---------------PEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN  177 (615)
T ss_pred             ccccCCccHHHHHhcchhHHHHHHHHcCCC---------------CcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc
Confidence            888888999999999999999999999998               67899999999999999999999999999999988


Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 009805          154 YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLA  214 (525)
Q Consensus       154 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  214 (525)
                       .++..|.|+||.|++.|+.|++++|+.+|+.++. |..|.|||..|...|+.+++++|++
T Consensus       178 -~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  178 -AKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             -hhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhc
Confidence             7899999999999999999999999999987665 4459999999999999999999995

>PHA02792 ankyrin-like protein; Provisional

Probab=99.98  E-value=5.4e-31  Score=263.35  Aligned_cols=303  Identities=12%  Similarity=0.047  Sum_probs=232.1

Q ss_pred             hhhhhccccccccCCCCchhhhh-hhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHH-cCChhHHHH
Q 009805           19 GIAKDNLRSIVTHNNKHTVLHVN-IARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAK-CGRPAVVKV   96 (525)
Q Consensus        19 ~ll~~~~~~~~~~~~g~t~Lh~A-~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~-~g~~~~v~~   96 (525)
                      .++.-+..++..+.+|.+|+|+- ..+       |+.|++++|+++    +.+++.++..+.||||+|+. .++.|++++
T Consensus        56 ~~~~~~~~~~~~n~~~~~~~~~~~s~n-------~~lElvk~LI~~----GAdvN~~~n~~~~~l~ya~~~~~~~eivk~  124 (631)
T PHA02792         56 VVILLLSSVDYKNINDFDIFEYLCSDN-------IDIELLKLLISK----GLEINSIKNGINIVEKYATTSNPNVDVFKL  124 (631)
T ss_pred             HHHHHHhCCCcCccCCccHHHHHHHhc-------ccHHHHHHHHHc----CCCcccccCCCCcceeEeecCCCChHHHHH
Confidence            44444555556666888899874 445       889999999774    77888888888999999965 689999999


Q ss_pred             HHHhhhcCChhHhhhhh---------------hh------HHHhcCccCCCChHhHHHHHcC-------CHHHHHHHHhc
Q 009805           97 LIEFAKKQPTAMKCCAK---------------TA------WQMLGLTNEEENTALHEAVQCG-------NLDAVKILMEA  148 (525)
Q Consensus        97 Ll~~~~~~~~~~~~~~~---------------~~------~~~l~~~~~~g~t~Lh~A~~~g-------~~~~v~~Ll~~  148 (525)
                      |++.|++.......+..               ..      ...++..|..|.||||+|+.++       +.+++++|+++
T Consensus       125 Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~  204 (631)
T PHA02792        125 LLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISH  204 (631)
T ss_pred             HHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhC
Confidence            99998763221111111               00      1245788999999999999999       89999999999


Q ss_pred             CCCCCCCCCCCCchHHHHHHHcC--CHHHHHHHHHhcCCCC-------------C------CCC-------CC-------
Q 009805          149 GPNFPYSANVNGETPLYMAAARG--SKKMVAEILEKCSSAA-------------H------DGP-------NG-------  193 (525)
Q Consensus       149 ~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~-------------~------~~~-------~g-------  193 (525)
                      |++++ ..|..|.||||+|+.+.  ..|++++|++...+..             .      .|.       .|       
T Consensus       205 g~~~~-~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~  283 (631)
T PHA02792        205 EKEMR-YYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYIL  283 (631)
T ss_pred             CCCcC-ccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchh
Confidence            99987 57778999999999999  8899999987432110             0      000       01       


Q ss_pred             -----------------------CcHHHHHHHcC--CHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 009805          194 -----------------------KTALHAAVNSY--AADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE  248 (525)
Q Consensus       194 -----------------------~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  248 (525)
                                             +..||.-.+.+  +.+++++|++.|.+..  + .....+++.|+..|+.+++++|++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~--r-~~~~n~~~~Aa~~gn~eIVelLIs  360 (631)
T PHA02792        284 ELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY--R-FKHINKYFQKFDNRDPKVVEYILK  360 (631)
T ss_pred             hhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc--c-CCcchHHHHHHHcCCHHHHHHHHH
Confidence                                   11233444444  5689999999998853  2 225667999999999999999999


Q ss_pred             cCCCcchhccc-CCCCcHHHHHHhcCCH---HHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCcccccc
Q 009805          249 FDGSSALILDK-DRKMTALLMAASQGHE---SLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSF  324 (525)
Q Consensus       249 ~~~~~~~~~~~-~~g~tpL~~A~~~g~~---~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~  324 (525)
                      +|++.. ..+. ..+.||||.|+.....   ++++.|++++++ ++.+|..|+||||+|+..++.+++++|++.   +++
T Consensus       361 ~GADIN-~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~---GAD  435 (631)
T PHA02792        361 NGNVVV-EDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLIDN---GAD  435 (631)
T ss_pred             cCCchh-hhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHHC---CCC
Confidence            999984 3443 2357999998876654   468889999998 788999999999999999999999999995   456


Q ss_pred             ccccCCCCChHHHHHHh
Q 009805          325 IDEKNEMGNTPLHILAT  341 (525)
Q Consensus       325 in~~d~~G~T~Lh~A~~  341 (525)
                      +|.+|..|+||||+|+.
T Consensus       436 IN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        436 INITTKYGSTCIGICVI  452 (631)
T ss_pred             CCCcCCCCCCHHHHHHH
Confidence            99999999999999976

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2.3e-31  Score=257.73  Aligned_cols=211  Identities=26%  Similarity=0.299  Sum_probs=192.6

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHh-hhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 009805           78 GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSA  156 (525)
Q Consensus        78 g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  156 (525)
                      -.+-++.|+++|..+-|+.|++. +..               ++..|.+|.|+||+|+.+++.+++++|+++|++++..-
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~---------------v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~g  108 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGES---------------VNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIG  108 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcC---------------CCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccC
Confidence            34567899999999999999998 665               56689999999999999999999999999999999766


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHH
Q 009805          157 NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY  236 (525)
Q Consensus       157 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~  236 (525)
                      ..-+.||||+|+.+|+..+|++|+++|++++.+|.+|.+|||.|+..++.-++-+|+.++.+ ++.+|.+|+||||+|+.
T Consensus       109 G~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAay  187 (600)
T KOG0509|consen  109 GVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAY  187 (600)
T ss_pred             CCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999977 79999999999999999


Q ss_pred             cCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhc
Q 009805          237 LGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVS  306 (525)
Q Consensus       237 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  306 (525)
                      .|+...++.|++.++.. ...++..|.||||+|+..|+..++. |+..+....+.+|.+|.||+.+|.+.
T Consensus       188 kg~~~~v~~LL~f~a~~-~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  188 KGFALFVRRLLKFGASL-LLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             hcccHHHHHHHHhcccc-cccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            99988899999999988 4455448999999999999999999 66556555889999999999999777

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=8.8e-31  Score=253.75  Aligned_cols=205  Identities=26%  Similarity=0.298  Sum_probs=132.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHh-cCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCC-CCCCcHHHHHHHcCC
Q 009805          162 TPLYMAAARGSKKMVAEILEK-CSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERD-DCGWTPLHHSAYLGL  239 (525)
Q Consensus       162 tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d-~~g~tpL~~A~~~g~  239 (525)
                      .-++.|++.|..+.++.|++. |.+++..|.+|.|+||+|+.+++.+++++|+++++++ +..+ .-+.||||+|+++|+
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcCc
Confidence            344555555555555555555 5555555556666666666666666666666666553 3333 455666666666666


Q ss_pred             hhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCc
Q 009805          240 KDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDP  319 (525)
Q Consensus       240 ~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~  319 (525)
                      ..+|.+|+++|+++ ...|. .|.+|||+|+..|+.-+|-+|+.++.+ ++.+|.+|+||||+|+..+....+..|++.+
T Consensus       125 ~~vv~lLlqhGAdp-t~~D~-~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  125 ISVVDLLLQHGADP-TLKDK-QGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             HHHHHHHHHcCCCC-ceecC-CCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHHhc
Confidence            66666666666666 34444 567777777777777777777777755 6777777777777777777766666666633


Q ss_pred             cccccccccC-CCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHhccCCChHHHHhh
Q 009805          320 LYKSFIDEKN-EMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVNKKKISVKHIELY  375 (525)
Q Consensus       320 ~~~~~in~~d-~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n~~g~t~l~~a~~  375 (525)
                         +.++.+| ++|+||||.|+..|+..+ .++++  .+.+.+..|.+|+||+++|.+
T Consensus       202 ---a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~--g~~~~d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  202 ---ASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLE--GGADLDKTNTNGKTPFDLAQE  254 (600)
T ss_pred             ---ccccccccccCCchHHHHHhcCCcceEehhhh--cCCcccccccCCCCHHHHHHH
Confidence               3356555 778888888777776655 44444  667777788888888888863

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.6e-27  Score=213.50  Aligned_cols=177  Identities=16%  Similarity=0.149  Sum_probs=125.9

Q ss_pred             CCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcC--CHHHHHHHHhcCCCCC
Q 009805           76 AKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG--NLDAVKILMEAGPNFP  153 (525)
Q Consensus        76 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~  153 (525)
                      ..+.||||.|+..|+.++|+.|++..                  +..|..|.||||+|+..+  +.+++++|+++|++++
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~~------------------n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn   80 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKFV------------------NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVN   80 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHhh------------------hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCC
Confidence            45678888888888888888887652                  235777888888887754  7888888888888877


Q ss_pred             CCCCCCCchHHHHHHHc---CCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHH--cCCHHHHHHHHHhcCcCcccCCCCCC
Q 009805          154 YSANVNGETPLYMAAAR---GSKKMVAEILEKCSSAAHDGPNGKTALHAAVN--SYAADVVEKLLAKKRHLTRERDDCGW  228 (525)
Q Consensus       154 ~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~--~~~~~~~~~Ll~~~~~~~~~~d~~g~  228 (525)
                      ...+..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||.|+.  .++.+++++|++.+.+ ++.+|..|.
T Consensus        81 ~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad-in~~d~~g~  159 (209)
T PHA02859         81 FKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS-FLNKDFDNN  159 (209)
T ss_pred             ccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-cccccCCCC
Confidence            44345788888887653   46788888888888888888888888887765  3567778888777777 466777777


Q ss_pred             cHHHH-HHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcC
Q 009805          229 TPLHH-SAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQG  273 (525)
Q Consensus       229 tpL~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g  273 (525)
                      ||||. ++..++.+++++|+++|.+. ...+. .|.|||++|..++
T Consensus       160 t~Lh~~a~~~~~~~iv~~Ll~~Gadi-~~~d~-~g~tpl~la~~~~  203 (209)
T PHA02859        160 NILYSYILFHSDKKIFDFLTSLGIDI-NETNK-SGYNCYDLIKFRN  203 (209)
T ss_pred             cHHHHHHHhcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHhhhh
Confidence            77774 44456667777777766665 33333 5666666666543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=5e-27  Score=211.58  Aligned_cols=175  Identities=13%  Similarity=0.189  Sum_probs=155.9

Q ss_pred             CCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC--ChhHHHHHHHhhhcCChhHhh
Q 009805           33 NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCG--RPAVVKVLIEFAKKQPTAMKC  110 (525)
Q Consensus        33 ~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~  110 (525)
                      .+++|||+|+..       |+.+.++.|++.       .+..|..|.||||+|+..+  +.+++++|++.+++       
T Consensus        20 ~~~~pL~~A~~~-------~~~~~vk~Li~~-------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad-------   78 (209)
T PHA02859         20 RYCNPLFYYVEK-------DDIEGVKKWIKF-------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD-------   78 (209)
T ss_pred             ccCcHHHHHHHh-------CcHHHHHHHHHh-------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC-------
Confidence            679999999999       999999999752       3457889999999999854  89999999999988       


Q ss_pred             hhhhhHHHhcCcc-CCCChHhHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHH--cCCHHHHHHHHHhcC
Q 009805          111 CAKTAWQMLGLTN-EEENTALHEAVQC---GNLDAVKILMEAGPNFPYSANVNGETPLYMAAA--RGSKKMVAEILEKCS  184 (525)
Q Consensus       111 ~~~~~~~~l~~~~-~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~--~g~~~~v~~Ll~~~~  184 (525)
                              ++.++ ..|.||||+|+..   ++.+++++|+++|++++ ..|..|.||||+|+.  .++.+++++|+++|+
T Consensus        79 --------vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin-~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ga  149 (209)
T PHA02859         79 --------VNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT-EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGV  149 (209)
T ss_pred             --------CCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhccCCHHHHHHHHHcCC
Confidence                    55665 5899999998764   47999999999999987 688899999999986  468999999999999


Q ss_pred             CCCCCCCCCCcHHHH-HHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcC
Q 009805          185 SAAHDGPNGKTALHA-AVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG  238 (525)
Q Consensus       185 ~~~~~~~~g~t~L~~-A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g  238 (525)
                      +++.+|..|.||||. |+..++.+++++|++.|.+ ++.+|..|.|||++|..++
T Consensus       150 din~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad-i~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        150 SFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGID-INETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhhh
Confidence            999999999999996 5668899999999999998 6889999999999998764

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=6.4e-28  Score=202.34  Aligned_cols=264  Identities=19%  Similarity=0.226  Sum_probs=228.6

Q ss_pred             cHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q 009805           80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN  159 (525)
Q Consensus        80 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  159 (525)
                      ..+..++..|-.+.-..|......                 .++..|..-+-.+.+.|+.+++...+.-.++.+...+.+
T Consensus        33 a~~~~~~~m~~t~p~~~l~~~~s~-----------------~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~   95 (296)
T KOG0502|consen   33 AELFEQVEMGTTEPRCALTAEISA-----------------LRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPE   95 (296)
T ss_pred             HHHHHHhhccccchhHHHHHHHHH-----------------HHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCch
Confidence            345555555555555555544322                 356678888888999999999999999888877778888


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCC
Q 009805          160 GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGL  239 (525)
Q Consensus       160 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~  239 (525)
                      |++.++.++-.++.+.+..++.++...|..+--+.+|+.+++.+.+++.+..+.+.   .+|..|+.|.|||.+|+..|+
T Consensus        96 g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~  172 (296)
T KOG0502|consen   96 GWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKGH  172 (296)
T ss_pred             hhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcCc
Confidence            99999999999999999999999999999999999999999999888888777655   368899999999999999999


Q ss_pred             hhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCc
Q 009805          240 KDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDP  319 (525)
Q Consensus       240 ~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~  319 (525)
                      +++|++|++.|+++... .+ ...++|.+|+..|..++|+.|+.++++ ++..|-+|-|||-||++.++.++++.|+.  
T Consensus       173 i~vV~fLL~~GAdp~~l-gk-~resALsLAt~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~--  247 (296)
T KOG0502|consen  173 IPVVQFLLNSGADPDAL-GK-YRESALSLATRGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLN--  247 (296)
T ss_pred             hHHHHHHHHcCCChhhh-hh-hhhhhHhHHhcCChHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHh--
Confidence            99999999999998443 33 467999999999999999999999999 89999999999999999999999999998  


Q ss_pred             cccccccccCCCCChHHHHHHhcCchhHHHHHHHhCCCChHHHhccCCChHH
Q 009805          320 LYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISVKH  371 (525)
Q Consensus       320 ~~~~~in~~d~~G~T~Lh~A~~~~~~~~~~ll~~~~~~d~~~~n~~g~t~l~  371 (525)
                       .+++++..|..|++++.+|+..|+..+...++  .-++.+.+|+.-+||+|
T Consensus       248 -sGAd~t~e~dsGy~~mdlAValGyr~Vqqvie--~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  248 -SGADVTQEDDSGYWIMDLAVALGYRIVQQVIE--KHALKLCQDSEKRTPLH  296 (296)
T ss_pred             -cCCCcccccccCCcHHHHHHHhhhHHHHHHHH--HHHHHHhhcccCCCCCC
Confidence             55679999999999999999999999988888  66777888888888764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.95  E-value=1.2e-28  Score=248.29  Aligned_cols=317  Identities=20%  Similarity=0.197  Sum_probs=280.9

Q ss_pred             CChHHHHHHHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCc
Q 009805            1 MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDS   80 (525)
Q Consensus         1 m~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~t   80 (525)
                      ++..|..||..|+.|++++|+.+|.+...+|..|.+||.+|+-.       ||..+|+.|++.   ....-...|..++|
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaata-------gh~tvV~~llk~---ha~veaQsdrtkdt  826 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATA-------GHITVVQDLLKA---HADVEAQSDRTKDT  826 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccccccccccchhhhhhccc-------CchHHHHHHHhh---hhhhhhhcccccCc
Confidence            35678999999999999999999999999999999999999999       999999999763   33344567889999


Q ss_pred             HHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCC-CCC
Q 009805           81 PLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSA-NVN  159 (525)
Q Consensus        81 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~  159 (525)
                      +|.+||..|+.++|++||..++..               ..++....|||-.|...|.+++++.|+..|.+++... ...
T Consensus       827 ~lSlacsggr~~vvelLl~~gank---------------ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSkl  891 (2131)
T KOG4369|consen  827 MLSLACSGGRTRVVELLLNAGANK---------------EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKL  891 (2131)
T ss_pred             eEEEecCCCcchHHHHHHHhhccc---------------cccchhhcCchhhhcCcchHHHHHHHhhccccccccccccc
Confidence            999999999999999999999873               3477788999999999999999999999999887543 457


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhcCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcC
Q 009805          160 GETPLYMAAARGSKKMVAEILEKCSSAAHD-GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG  238 (525)
Q Consensus       160 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g  238 (525)
                      |.+||.+|..+||.+.++.|++.|.++|.. ..+.+|+|-.|+..|+.+++..||...+. ...+-..|.|||+-++..|
T Consensus       892 gisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an-vehRaktgltplme~AsgG  970 (2131)
T KOG4369|consen  892 GISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN-VEHRAKTGLTPLMEMASGG  970 (2131)
T ss_pred             CcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhh-hhhhcccCCcccchhhcCC
Confidence            899999999999999999999999988874 44678999999999999999999999888 5778889999999999999


Q ss_pred             ChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhC
Q 009805          239 LKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKD  318 (525)
Q Consensus       239 ~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~  318 (525)
                      ++|+=++|+..|++.+.........|+|-+++..||...++.|+...+. +..++++|.|+|+.|+..|+...+..|++ 
T Consensus       971 yvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at-v~v~NkkG~T~Lwla~~Gg~lss~~il~~- 1048 (2131)
T KOG4369|consen  971 YVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT-VRVPNKKGCTVLWLASAGGALSSCPILVS- 1048 (2131)
T ss_pred             ccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc-eecccCCCCcccchhccCCccccchHHhh-
Confidence            9999999999999886554444556999999999999999999998877 78999999999999999999999999998 


Q ss_pred             ccccccccccCCCCChHHHHHHhcCchhH
Q 009805          319 PLYKSFIDEKNEMGNTPLHILATLSARTC  347 (525)
Q Consensus       319 ~~~~~~in~~d~~G~T~Lh~A~~~~~~~~  347 (525)
                        ..++++.+|+.-+|+++-|.+.|...|
T Consensus      1049 --~~ad~d~qdnr~~S~~maafRKgh~~i 1075 (2131)
T KOG4369|consen 1049 --SVADADQQDNRTNSRTMAAFRKGHFAI 1075 (2131)
T ss_pred             --cccChhhhhcccccccHHHHHhchhhe
Confidence              446689999999999999999875443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.5e-26  Score=223.65  Aligned_cols=200  Identities=13%  Similarity=0.077  Sum_probs=107.8

Q ss_pred             CccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHH--cCCHHHHHHH
Q 009805           68 PSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQ--CGNLDAVKIL  145 (525)
Q Consensus        68 ~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~--~g~~~~v~~L  145 (525)
                      +..++.+..+|     +|+..+..+++++|+.++++.+--         ..+-.++..++|+||+++.  .|+.++|++|
T Consensus        72 ~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~---------~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~L  137 (437)
T PHA02795         72 RDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIF---------SIIIKNCNSVQDLLLYYLSNAYVEIDIVDFM  137 (437)
T ss_pred             Ccchhhhhhhh-----HHhhcchHHHHHHHHhcccccchh---------hhhhhccccccHHHHHHHHhcCCCHHHHHHH
Confidence            44444444444     555666666666666665553210         0011244455666666665  5566666666


Q ss_pred             HhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCC------CCCCCcHHHHHHHcCCHHHHHHHHHhcCcC
Q 009805          146 MEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD------GPNGKTALHAAVNSYAADVVEKLLAKKRHL  219 (525)
Q Consensus       146 l~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~------~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  219 (525)
                      +++|++++.   ..+.||||.|+..++.+++++|+++|++....      +..+.+++|.|...++.+++++|+++|++ 
T Consensus       138 I~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD-  213 (437)
T PHA02795        138 VDHGAVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED-  213 (437)
T ss_pred             HHCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC-
Confidence            666666542   23355666666666666666666666432211      12345556666666666666666666655 


Q ss_pred             cccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCC--------HHHHHHHHhhCCC
Q 009805          220 TRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGH--------ESLAGTIIAHYPE  287 (525)
Q Consensus       220 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~--------~~~v~~Ll~~~~~  287 (525)
                      .+.+|..|.||||+|+..|+.+++++|+++|++. +..+. .|.||||+|+.+|+        .++++.|++++++
T Consensus       214 IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdI-N~~d~-~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gad  287 (437)
T PHA02795        214 INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANV-NAVMS-NGYTCLDVAVDRGSVIARRETHLKILEILLREPLS  287 (437)
T ss_pred             cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCC
Confidence            3555666666666666666666666666666555 33333 45666666665552        4566666665555

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=4.5e-26  Score=220.27  Aligned_cols=165  Identities=16%  Similarity=0.064  Sum_probs=143.0

Q ss_pred             CCCCCchHHHHHHH--cCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccC-----CCCCC
Q 009805          156 ANVNGETPLYMAAA--RGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRER-----DDCGW  228 (525)
Q Consensus       156 ~~~~g~tpL~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-----d~~g~  228 (525)
                      .+..++|+||.++.  .|+.+++++|+++|++++..  ++.||+|.|+..++.+++++|+++|++..+..     +..+.
T Consensus       112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~  189 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQY  189 (437)
T ss_pred             ccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhcc
Confidence            34458999999999  89999999999999999874  45899999999999999999999997543333     23478


Q ss_pred             cHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCC
Q 009805          229 TPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLH  308 (525)
Q Consensus       229 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  308 (525)
                      +++|.|+..++.+++++|+++|++. +..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+
T Consensus       190 t~l~~a~~~~~~eIve~LIs~GADI-N~kD~-~G~TpLh~Aa~~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        190 TRGFLVDEPTVLEIYKLCIPYIEDI-NQLDA-GGRTLLYRAIYAGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             chhHHHHhcCHHHHHHHHHhCcCCc-CcCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999988 55555 799999999999999999999999998 78899999999999999984


Q ss_pred             --------HHHHHHHhhCcccccccccc
Q 009805          309 --------ESKLKRLLKDPLYKSFIDEK  328 (525)
Q Consensus       309 --------~~~~~~ll~~~~~~~~in~~  328 (525)
                              .++++.|++.+.   +++..
T Consensus       267 ~~~~~~~~~eIvelLL~~ga---dI~~~  291 (437)
T PHA02795        267 VIARRETHLKILEILLREPL---SIDCI  291 (437)
T ss_pred             cccccccHHHHHHHHHhCCC---CCCch
Confidence                    589999988543   35544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.93  E-value=3.7e-26  Score=230.65  Aligned_cols=314  Identities=22%  Similarity=0.208  Sum_probs=275.4

Q ss_pred             cCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhh
Q 009805           31 HNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKC  110 (525)
Q Consensus        31 ~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  110 (525)
                      ..+-.|+|..||..       ||.|.++.|+..    +..+..+|..|.+||.+|+-.||..+|+.|+...++.      
T Consensus       754 e~n~~t~LT~acag-------gh~e~vellv~r----ganiehrdkkgf~plImaatagh~tvV~~llk~ha~v------  816 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAG-------GHREEVELLVVR----GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADV------  816 (2131)
T ss_pred             CccccccccccccC-------ccHHHHHHHHHh----cccccccccccchhhhhhcccCchHHHHHHHhhhhhh------
Confidence            33778999999999       999999999763    6777889999999999999999999999999988762      


Q ss_pred             hhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCC-
Q 009805          111 CAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD-  189 (525)
Q Consensus       111 ~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~-  189 (525)
                              --..|+.+.|+|-+||..|..++|++||..|++-. .++....|||.+|...|+.++++.|+..|..++.+ 
T Consensus       817 --------eaQsdrtkdt~lSlacsggr~~vvelLl~~ganke-hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrt  887 (2131)
T KOG4369|consen  817 --------EAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKE-HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRT  887 (2131)
T ss_pred             --------hhhcccccCceEEEecCCCcchHHHHHHHhhcccc-ccchhhcCchhhhcCcchHHHHHHHhhccccccccc
Confidence                    22468899999999999999999999999999865 67888899999999999999999999999888875 


Q ss_pred             -CCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHH
Q 009805          190 -GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLM  268 (525)
Q Consensus       190 -~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~  268 (525)
                       .+.|-.||..|..+|+.+.++.|++.+.++......+.+|+|-+|+..|+.+++.+||.+.+.. ..+.+ .|.|||+-
T Consensus       888 gSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anv-ehRak-tgltplme  965 (2131)
T KOG4369|consen  888 GSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANV-EHRAK-TGLTPLME  965 (2131)
T ss_pred             ccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhh-hhhcc-cCCcccch
Confidence             4568999999999999999999999999977667778899999999999999999999988876 33444 69999999


Q ss_pred             HHhcCCHHHHHHHHhhCCCcccc-ccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchh-
Q 009805          269 AASQGHESLAGTIIAHYPECYDL-VDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSART-  346 (525)
Q Consensus       269 A~~~g~~~~v~~Ll~~~~~~~~~-~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~-  346 (525)
                      ++..|.+++-+.|+..|+|.... .-....|+|-+++..|+.+.+..|+.   .++.+..+|++|+|+|.+|+..+... 
T Consensus       966 ~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln---~~atv~v~NkkG~T~Lwla~~Gg~lss 1042 (2131)
T KOG4369|consen  966 MASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLN---GDATVRVPNKKGCTVLWLASAGGALSS 1042 (2131)
T ss_pred             hhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhC---CccceecccCCCCcccchhccCCcccc
Confidence            99999999999999999984322 22345689999999999999998887   44568889999999999999998665 


Q ss_pred             HHHHHHHhCCCChHHHhccCCChHHHHhhcC
Q 009805          347 CNEIVRQIGKGDTQAVNKKKISVKHIELYGC  377 (525)
Q Consensus       347 ~~~ll~~~~~~d~~~~n~~g~t~l~~a~~~~  377 (525)
                      |..|++  .++|.+..|+...++++.|.+.+
T Consensus      1043 ~~il~~--~~ad~d~qdnr~~S~~maafRKg 1071 (2131)
T KOG4369|consen 1043 CPILVS--SVADADQQDNRTNSRTMAAFRKG 1071 (2131)
T ss_pred             chHHhh--cccChhhhhcccccccHHHHHhc
Confidence            478888  89999999999999999887644

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=2.8e-26  Score=192.48  Aligned_cols=239  Identities=20%  Similarity=0.212  Sum_probs=164.0

Q ss_pred             cCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCC
Q 009805           74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFP  153 (525)
Q Consensus        74 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  153 (525)
                      ++..|+.-+-.|.+.|+.+++..++...++.              +...+.+|..+++.++-+++...+..++.++...+
T Consensus        58 ~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~--------------~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgn  123 (296)
T KOG0502|consen   58 RNALGESLLTVAVRSGNSDVAVQSAQLDPDA--------------IDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGN  123 (296)
T ss_pred             HHhcCCcccchhhhcCCcHHHHHhhccCCCC--------------CCCCCchhhhhhhhcCCCCCcceeeeeecccccCC
Confidence            4455666666777777777777666654432              22345567777777777777777777777776655


Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHH
Q 009805          154 YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHH  233 (525)
Q Consensus       154 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~  233 (525)
                       ..+..+++|+.+++-..+.+.+..+.+.  .+|..|+.|.|||.+|+..|+.+++++|++.|++ +....+...|+|.+
T Consensus       124 -evs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd-p~~lgk~resALsL  199 (296)
T KOG0502|consen  124 -EVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD-PDALGKYRESALSL  199 (296)
T ss_pred             -ccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCC-hhhhhhhhhhhHhH
Confidence             5566777777777766666665554443  3456677777777777777777777777777777 45566666777777


Q ss_pred             HHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHH
Q 009805          234 SAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLK  313 (525)
Q Consensus       234 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~  313 (525)
                      |++.|+.++|++|++++.+. +..|. +|-|||.+|++.|+.++++.|+..|++ +...|..|.+++..|+..|.. +++
T Consensus       200 At~ggytdiV~lLL~r~vdV-NvyDw-NGgTpLlyAvrgnhvkcve~Ll~sGAd-~t~e~dsGy~~mdlAValGyr-~Vq  275 (296)
T KOG0502|consen  200 ATRGGYTDIVELLLTREVDV-NVYDW-NGGTPLLYAVRGNHVKCVESLLNSGAD-VTQEDDSGYWIMDLAVALGYR-IVQ  275 (296)
T ss_pred             HhcCChHHHHHHHHhcCCCc-ceecc-CCCceeeeeecCChHHHHHHHHhcCCC-cccccccCCcHHHHHHHhhhH-HHH
Confidence            77777777777777777776 44454 677777777777777777777777777 566777777777777777776 666


Q ss_pred             HHhhCccccccccccCCCCChHHH
Q 009805          314 RLLKDPLYKSFIDEKNEMGNTPLH  337 (525)
Q Consensus       314 ~ll~~~~~~~~in~~d~~G~T~Lh  337 (525)
                      .+++   .+.+.+.+|..-.||||
T Consensus       276 qvie---~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  276 QVIE---KHALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHH---HHHHHHhhcccCCCCCC
Confidence            6665   23445667777777765

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.93  E-value=1.3e-25  Score=220.35  Aligned_cols=256  Identities=23%  Similarity=0.240  Sum_probs=200.0

Q ss_pred             CChHHHHHHHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCc
Q 009805            1 MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDS   80 (525)
Q Consensus         1 m~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~t   80 (525)
                      |+..|..|++.||.+.+..+++..--       +.-+|. +-.                       .+...+..|.+|.|
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~-------r~~~l~-~~t-----------------------rsds~n~qd~~gfT   51 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKG-------RSGLLF-FTT-----------------------RSDSHNLQDYSGFT   51 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCC-------CCCCCC-CCC-----------------------CCccccccCccchh
Confidence            46778889999999999988874100       111111 111                       12233456778899


Q ss_pred             HHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q 009805           81 PLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNG  160 (525)
Q Consensus        81 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  160 (525)
                      .||.|+.+|+.+++++|++..+.               ++..|..|.+|||+|+++|+.++++.++.++..++ ..+..|
T Consensus        52 alhha~Lng~~~is~llle~ea~---------------ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~n-a~~~e~  115 (854)
T KOG0507|consen   52 LLHHAVLNGQNQISKLLLDYEAL---------------LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILN-AVNIEN  115 (854)
T ss_pred             HHHHHHhcCchHHHHHHhcchhh---------------hhhhhccCcceEEehhhcCcchHHHHHHhcccCCC-cccccC
Confidence            99999999999999999888765               66778889999999999999999999998885544 777889


Q ss_pred             chHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcC-------cccCCCCCCcHHHH
Q 009805          161 ETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHL-------TRERDDCGWTPLHH  233 (525)
Q Consensus       161 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~-------~~~~d~~g~tpL~~  233 (525)
                      .||||.|++.||.+++.+|+++++++-.++..+.|+|..|++.|..++++.|+...-..       ...++-.+.+|||.
T Consensus       116 ~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHl  195 (854)
T KOG0507|consen  116 ETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHL  195 (854)
T ss_pred             cCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcch
Confidence            99999999999999999999999999889999999999999999999999888762111       12345567788999


Q ss_pred             HHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcC
Q 009805          234 SAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSL  307 (525)
Q Consensus       234 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  307 (525)
                      |+.+|+.++++.|++.|.+.+....+  | |+||.|+..|..++|+.|++.+.. ...+|.+|+|+|.+.....
T Consensus       196 aakngh~~~~~~ll~ag~din~~t~~--g-talheaalcgk~evvr~ll~~gin-~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  196 AAKNGHVECMQALLEAGFDINYTTED--G-TALHEAALCGKAEVVRFLLEIGIN-THIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             hhhcchHHHHHHHHhcCCCccccccc--c-hhhhhHhhcCcchhhhHHHhhccc-cccccccchHHHHHHHhcc
Confidence            99999999999999998888544332  3 899999999999999999998887 6778889999988766543

>PF13962 PGG: Domain of unknown function

Probab=99.92  E-value=3.6e-25  Score=177.29  Aligned_cols=102  Identities=40%  Similarity=0.579  Sum_probs=83.5

Q ss_pred             hhhhhhccchhHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccCCc-cchhhHhhhHHHHHHHHHHHHHHHHHh
Q 009805          419 VTGMENASVSHLVVAALTATVTFAAALTLLGGNKGDNEDGPNRGSAIFAKNA-AFQAFIISDAIAMVLSLFAAFVHFILS  497 (525)
Q Consensus       419 ~~~~~~~~~s~~vva~LiaTv~Faa~~t~PGg~~~~~~~~~~~G~~~~~~~~-~f~~F~~~~~~a~~~S~~~~~~~~~~~  497 (525)
                      +||+++++++++|||+|||||||||+||||||++||+  + +.|+|++.+++ .|++|+++|++||++|++++++++. .
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~--~-~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~-~   76 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDD--D-DAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLIS-G   76 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc--c-CCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHH-H
Confidence            4899999999999999999999999999999999986  2 77999999888 9999999999999999999999883 3


Q ss_pred             hhhhH----HHHHHHHHHHHHHHHHHHHHHc
Q 009805          498 LKLFR----KFIFVFVFALFFTLIAMVLASS  524 (525)
Q Consensus       498 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~  524 (525)
                      +..+.    ..+......+++.+++|+.+|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~  107 (113)
T PF13962_consen   77 LDDFRRFLRRYLLIASVLMWIALISMMVAFA  107 (113)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            42111    2233344667777777777664

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=1.1e-24  Score=234.65  Aligned_cols=250  Identities=22%  Similarity=0.192  Sum_probs=185.3

Q ss_pred             ChHHHHHHHcCCcchhhhhhhh--ccccccccCCCCchhh-hhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCC
Q 009805            2 EPKLYEAATNGEIEPFNGIAKD--NLRSIVTHNNKHTVLH-VNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKG   78 (525)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~Lh-~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g   78 (525)
                      +..++.||+.|+.+.++.++++  +.+.+..|..|.|||| .|+.+       ++.++++.|++.    +.    .+..|
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~-------~~~eiv~lLl~~----g~----~~~~G   82 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIEN-------ENLELTELLLNL----SC----RGAVG   82 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhc-------ChHHHHHHHHhC----CC----CCCcC
Confidence            3578999999999999999998  8888888889999999 88888       999999999662    22    67889


Q ss_pred             CcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCC--
Q 009805           79 DSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSA--  156 (525)
Q Consensus        79 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~--  156 (525)
                      +||||.|+. +..+.++.++............. ..........+..|.||||+|+.+|+.++|++|+++|++++...  
T Consensus        83 ~T~Lh~A~~-~~~~~v~~ll~~l~~~~~~~~~~-~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~  160 (743)
T TIGR00870        83 DTLLHAISL-EYVDAVEAILLHLLAAFRKSGPL-ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACG  160 (743)
T ss_pred             hHHHHHHHh-ccHHHHHHHHHHHhhcccccCch-hhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCC
Confidence            999999987 34444444444332211000000 00000011234579999999999999999999999999987321  


Q ss_pred             -----------CCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcC---------CHHHHHHHHHhc
Q 009805          157 -----------NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSY---------AADVVEKLLAKK  216 (525)
Q Consensus       157 -----------~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~---------~~~~~~~Ll~~~  216 (525)
                                 ...|+||||.|+..|+.+++++|+++|++++..|..|+||||+|+..+         ...+.+++++.+
T Consensus       161 ~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll  240 (743)
T TIGR00870       161 DFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLL  240 (743)
T ss_pred             chhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence                       135899999999999999999999999999999999999999999986         223555555554


Q ss_pred             CcC--c----ccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHH
Q 009805          217 RHL--T----RERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAA  270 (525)
Q Consensus       217 ~~~--~----~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~  270 (525)
                      ...  .    +..|.+|.||||+|+..|+.+++++|++.+...... . .....|.+.+.
T Consensus       241 ~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~-~-a~~~~~~~~~~  298 (743)
T TIGR00870       241 DKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKF-V-AWPNGQQLLSL  298 (743)
T ss_pred             hccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhccee-e-ccCcchHhHhh
Confidence            332  1    456889999999999999999999999854332111 1 13445665554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=9.3e-25  Score=214.49  Aligned_cols=255  Identities=23%  Similarity=0.219  Sum_probs=211.8

Q ss_pred             cHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q 009805           80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN  159 (525)
Q Consensus        80 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  159 (525)
                      +=|.-|++.|+.+.+..|++.......  .--......-.+..|.+|.|+||.|+.+|+.+++++|++..+-+. ..+..
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~--~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ld-l~d~k   81 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSG--LLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLD-LCDTK   81 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCC--CCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhh-hhhcc
Confidence            346679999999999999986543110  000111122367789999999999999999999999999988766 56689


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCC
Q 009805          160 GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGL  239 (525)
Q Consensus       160 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~  239 (525)
                      |.+|||+|++.|+.++++.++..+..+|.....|.||||.|+.+|+.+++.+|++++++ +-.+|..+.|+|..|++.|.
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qfgr  160 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRFGR  160 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCC-ccccCcccccHHHHHHHhhh
Confidence            99999999999999999999999998999999999999999999999999999999999 67899999999999999999


Q ss_pred             hhHHHHHhhcCCCcch------hcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHH
Q 009805          240 KDITALLLEFDGSSAL------ILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLK  313 (525)
Q Consensus       240 ~~~v~~Ll~~~~~~~~------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~  313 (525)
                      .++++.|++..-....      ....-.+-+|||.|+++|+.++++.|++.+-+ ++.....| |+||.|+..|..+++.
T Consensus       161 ~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d-in~~t~~g-talheaalcgk~evvr  238 (854)
T KOG0507|consen  161 AEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD-INYTTEDG-TALHEAALCGKAEVVR  238 (854)
T ss_pred             hHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC-cccccccc-hhhhhHhhcCcchhhh
Confidence            9999999986222111      01112567899999999999999999999988 56555544 9999999999999999


Q ss_pred             HHhhCccccccccccCCCCChHHHHHHhcC
Q 009805          314 RLLKDPLYKSFIDEKNEMGNTPLHILATLS  343 (525)
Q Consensus       314 ~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~  343 (525)
                      .|++.++.   ...+|.+|.|+|.+-....
T Consensus       239 ~ll~~gin---~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  239 FLLEIGIN---THIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             HHHhhccc---cccccccchHHHHHHHhcc
Confidence            99996654   6889999999999887764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=2.7e-24  Score=231.58  Aligned_cols=223  Identities=23%  Similarity=0.180  Sum_probs=174.1

Q ss_pred             CCCChHhHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCchHHH-HHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHH
Q 009805          124 EEENTALHEAVQCGNLDAVKILMEA--GPNFPYSANVNGETPLY-MAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAA  200 (525)
Q Consensus       124 ~~g~t~Lh~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~g~tpL~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  200 (525)
                      ..++.+++.|++.|+.+.++.+++.  +.+++ ..|..|+|||| .|+.+++.++++.|+++|+    .+..|.||||.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in-~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A   89 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNIN-CPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAI   89 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCC-CcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHH
Confidence            3567899999999999999999998  66665 67889999999 8889999999999999987    677899999999


Q ss_pred             HHcC---CHHHHHHHHHhcCc-----Cc----ccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcc----------
Q 009805          201 VNSY---AADVVEKLLAKKRH-----LT----RERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILD----------  258 (525)
Q Consensus       201 ~~~~---~~~~~~~Ll~~~~~-----~~----~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------  258 (525)
                      +..+   ...++..+....++     ..    ......|.||||+|+..|+.+++++|+++|++......          
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~  169 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGV  169 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCC
Confidence            8732   22334444443322     11    11235699999999999999999999999988753211          


Q ss_pred             --cCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCC---------HHHHHHHhhCccccccc--
Q 009805          259 --KDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLH---------ESKLKRLLKDPLYKSFI--  325 (525)
Q Consensus       259 --~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~~~~ll~~~~~~~~i--  325 (525)
                        ...|.+|||.|+..|+.++++.|++++++ ++..|..|+||||+|+..+.         ..+.+.+++.+......  
T Consensus       170 ~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~e  248 (743)
T TIGR00870       170 DSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKE  248 (743)
T ss_pred             CcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHh
Confidence              12588999999999999999999999987 78899999999999999872         23444455443332223  


Q ss_pred             --cccCCCCChHHHHHHhcCchhH-HHHHH
Q 009805          326 --DEKNEMGNTPLHILATLSARTC-NEIVR  352 (525)
Q Consensus       326 --n~~d~~G~T~Lh~A~~~~~~~~-~~ll~  352 (525)
                        +.+|.+|.||||+|+..|...+ ..++.
T Consensus       249 l~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       249 LEVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             hhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence              6789999999999999987766 55555

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=5.8e-23  Score=222.26  Aligned_cols=193  Identities=21%  Similarity=0.238  Sum_probs=167.2

Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 009805          138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKR  217 (525)
Q Consensus       138 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  217 (525)
                      +.++-..+.+.+..   ..+..+.++|+.||..|+.++++.|++.|++++..|..|.||||+|+..|+.++++.|+++++
T Consensus       506 ~l~v~~ll~~~~~~---~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga  582 (823)
T PLN03192        506 DLNVGDLLGDNGGE---HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHAC  582 (823)
T ss_pred             cccHHHHHhhcccc---cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence            34444555554433   234457899999999999999999999999999999999999999999999999999999998


Q ss_pred             cCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCC
Q 009805          218 HLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGW  297 (525)
Q Consensus       218 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~  297 (525)
                      + ++.+|.+|+||||+|+..|+.+++++|++.+....    ...+.++||.|+.+|+.++++.|++++++ ++.+|.+|+
T Consensus       583 d-in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~----~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~  656 (823)
T PLN03192        583 N-VHIRDANGNTALWNAISAKHHKIFRILYHFASISD----PHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGA  656 (823)
T ss_pred             C-CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC----cccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCC
Confidence            8 68899999999999999999999999998765432    22577999999999999999999999998 788999999


Q ss_pred             chhHHHHhcCCHHHHHHHhhCccccccccccCCCC-ChHHHHHHhc
Q 009805          298 NVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMG-NTPLHILATL  342 (525)
Q Consensus       298 t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G-~T~Lh~A~~~  342 (525)
                      ||||+|+..|+.++++.|++.   +++++.+|..| .||++++...
T Consensus       657 TpLh~A~~~g~~~iv~~Ll~~---GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        657 TALQVAMAEDHVDMVRLLIMN---GADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             CHHHHHHHCCcHHHHHHHHHc---CCCCCCCCCCCCCCHHHHHHHH
Confidence            999999999999999999985   45689999888 9999988654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=5.8e-23  Score=222.29  Aligned_cols=181  Identities=19%  Similarity=0.191  Sum_probs=134.6

Q ss_pred             cCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCC
Q 009805           74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFP  153 (525)
Q Consensus        74 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  153 (525)
                      .+..+.++||.||..|+.++++.|++.|.+               ++..|.+|.||||+|+..|+.+++++|+++|++++
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d---------------~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin  585 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLD---------------PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH  585 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCC---------------CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCC
Confidence            444567788888888888888888887776               45677788888888888888888888888887765


Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHH
Q 009805          154 YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHH  233 (525)
Q Consensus       154 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~  233 (525)
                       ..|.+|.||||+|+..|+.+++++|++.++..+  ...+.++||.|+..|+.++++.|+++|++ ++.+|.+|+||||+
T Consensus       586 -~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~  661 (823)
T PLN03192        586 -IRDANGNTALWNAISAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGATALQV  661 (823)
T ss_pred             -CcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHH
Confidence             567778888888888888888888887665433  23466788888888888888888888877 56777888888888


Q ss_pred             HHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCC
Q 009805          234 SAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGH  274 (525)
Q Consensus       234 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~  274 (525)
                      |+..|+.+++++|+++|++. ...+...+.+|+..+.....
T Consensus       662 A~~~g~~~iv~~Ll~~GAdv-~~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        662 AMAEDHVDMVRLLIMNGADV-DKANTDDDFSPTELRELLQK  701 (823)
T ss_pred             HHHCCcHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHHHH
Confidence            88888888888888888776 33343233777777665443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=1.9e-21  Score=175.73  Aligned_cols=163  Identities=33%  Similarity=0.400  Sum_probs=102.4

Q ss_pred             hcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHc-----CCHHHHHHHHHhcCCCCCC-CCC
Q 009805          119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAAR-----GSKKMVAEILEKCSSAAHD-GPN  192 (525)
Q Consensus       119 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~-----g~~~~v~~Ll~~~~~~~~~-~~~  192 (525)
                      +|..|.+|+|+|||++..+|+++|+.||+.|.--....|..|.||+++++..     .+.++|..|...| |+|.+ ...
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            5556666777777777777777777777666544446666667776666532     2445566665444 33433 235


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhc
Q 009805          193 GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQ  272 (525)
Q Consensus       193 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~  272 (525)
                      |+|+|+.|+.+|+.++++.||..+++ +|.+|.+|.|+|++|+..|+.|++++||..........|. +|.|+|.+|-..
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~-DgSTAl~IAlea  417 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDV-DGSTALSIALEA  417 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecC-CCchhhhhHHhc
Confidence            66777777777777777777766666 4666666777777777777777777766655444344444 566777777777


Q ss_pred             CCHHHHHHHHhh
Q 009805          273 GHESLAGTIIAH  284 (525)
Q Consensus       273 g~~~~v~~Ll~~  284 (525)
                      |+.+|.-.|-.+
T Consensus       418 gh~eIa~mlYa~  429 (452)
T KOG0514|consen  418 GHREIAVMLYAH  429 (452)
T ss_pred             CchHHHHHHHHH
Confidence            776666555544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=9e-21  Score=164.42  Aligned_cols=129  Identities=14%  Similarity=0.127  Sum_probs=67.5

Q ss_pred             cCCCCCcHHHHHHHcCCh----hHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHH---HHHHHH
Q 009805           74 TNAKGDSPLHAAAKCGRP----AVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLD---AVKILM  146 (525)
Q Consensus        74 ~~~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~---~v~~Ll  146 (525)
                      .+.++.++||.||+.|+.    +++++|++.+..               ++.+|..|.||||+|+..|+.+   ++++|+
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~---------------~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll   80 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL---------------LHRYDHHGRQCTHMVAWYDRANAVMKIELLV   80 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh---------------hhccCCCCCcHHHHHHHhCccCHHHHHHHHH
Confidence            444455555555555554    333333433332               3344555555555555555433   245555


Q ss_pred             hcCCCCCCCCC-CCCchHHHHHHHcCCHHHHHHHHH-hcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 009805          147 EAGPNFPYSAN-VNGETPLYMAAARGSKKMVAEILE-KCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH  218 (525)
Q Consensus       147 ~~~~~~~~~~~-~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  218 (525)
                      +.|++++ ..+ ..|.||||+|+..|+.+++++|++ .|++++.++..|.||||+|+..++.+++++|++++++
T Consensus        81 ~~Gadin-~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~  153 (166)
T PHA02743         81 NMGADIN-ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAV  153 (166)
T ss_pred             HcCCCCC-CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            5555554 233 355555555555555555555553 4555555555555555555555555555555555554

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=4.5e-21  Score=173.30  Aligned_cols=160  Identities=24%  Similarity=0.290  Sum_probs=88.2

Q ss_pred             cCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHc-----CCHHHHHHHHhc
Q 009805           74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC-----GNLDAVKILMEA  148 (525)
Q Consensus        74 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll~~  148 (525)
                      .|.+|+|+||||+..+++++|+.||+.+...              ++.+|.-|.||++.++..     .+.++|..|.+.
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~--------------VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m  329 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCD--------------VDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM  329 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCccc--------------ccccccccccHHHHHHHHhhcchhhHHHHHHHHhc
Confidence            4555555555555555555555555555431              445555555555555432     244555555554


Q ss_pred             CCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCC
Q 009805          149 GPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGW  228 (525)
Q Consensus       149 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~  228 (525)
                      | +++......|+|+|++|+.+|+.++|+.||..|+|+|.+|.+|-|+|+.|+++|+.|++++||..........|.+|.
T Consensus       330 g-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgS  408 (452)
T KOG0514|consen  330 G-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGS  408 (452)
T ss_pred             c-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCc
Confidence            3 233344445556666666666666666666555666666556666666666666666666555554444455555566


Q ss_pred             cHHHHHHHcCChhHHHHHhh
Q 009805          229 TPLHHSAYLGLKDITALLLE  248 (525)
Q Consensus       229 tpL~~A~~~g~~~~v~~Ll~  248 (525)
                      |+|..|...|+.||.-.|..
T Consensus       409 TAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  409 TALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             hhhhhHHhcCchHHHHHHHH
Confidence            66666666665555555543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=3.4e-21  Score=183.35  Aligned_cols=89  Identities=24%  Similarity=0.344  Sum_probs=66.3

Q ss_pred             HHHHHHHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHH
Q 009805            4 KLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLH   83 (525)
Q Consensus         4 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh   83 (525)
                      .++.|+..|+.+-++.++..|.+++..+.+|.|+||-+|.-       .+.++|+++++.    +..++..|..|.||||
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id-------~~~e~v~~l~e~----ga~Vn~~d~e~wtPlh  111 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACID-------DNLEMVKFLVEN----GANVNAQDNEGWTPLH  111 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhc-------ccHHHHHHHHHh----cCCccccccccCCcch
Confidence            35667777777777777777766666666777777777777       777777777663    6667777777777777


Q ss_pred             HHHHcCChhHHHHHHHhhhc
Q 009805           84 AAAKCGRPAVVKVLIEFAKK  103 (525)
Q Consensus        84 ~A~~~g~~~~v~~Ll~~~~~  103 (525)
                      .|+-+|+..++++|+..+++
T Consensus       112 aaascg~~~i~~~li~~gA~  131 (527)
T KOG0505|consen  112 AAASCGYLNIVEYLIQHGAN  131 (527)
T ss_pred             hhcccccHHHHHHHHHhhhh
Confidence            77777777777777777766

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=2.1e-20  Score=162.94  Aligned_cols=137  Identities=18%  Similarity=0.285  Sum_probs=116.9

Q ss_pred             cccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCC----HHHHHHHHh
Q 009805           72 IQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGN----LDAVKILME  147 (525)
Q Consensus        72 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~  147 (525)
                      +.+|..|.||||+|++.|+.++++.|+.......         ....++.+|..|.||||+|+..|+    .+++++|++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~---------~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~   85 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDC---------HAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE   85 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccch---------hhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHH
Confidence            4578899999999999999999999876431000         001267889999999999999998    589999999


Q ss_pred             cCCCCCCCCC-CCCchHHHHHHHcCCHHHHHHHHH-hcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 009805          148 AGPNFPYSAN-VNGETPLYMAAARGSKKMVAEILE-KCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH  218 (525)
Q Consensus       148 ~~~~~~~~~~-~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  218 (525)
                      .|++++ ..+ ..|.||||+|+..++.+++++|++ .+++++..+..|.||||+|+..++.++++.|++.+..
T Consensus        86 ~gadin-~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         86 LGADIN-AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             cCCCCC-CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999987 445 489999999999999999999997 5899999999999999999999999999999987654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=5.4e-21  Score=181.98  Aligned_cols=229  Identities=22%  Similarity=0.211  Sum_probs=168.1

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHH
Q 009805          128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAAD  207 (525)
Q Consensus       128 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  207 (525)
                      -.+..|+..|..+-+..|+..|++.+ ..+.+|.|+||.|+...+.+||++|+++|++++..|..|+||||.|+..|+..
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~~-~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASPN-LCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCcc-ccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHH
Confidence            34667889999999999999998875 78889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcC-C---HHHHHHHHh
Q 009805          208 VVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQG-H---ESLAGTIIA  283 (525)
Q Consensus       208 ~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g-~---~~~v~~Ll~  283 (525)
                      ++++|++.++++ ...+.+|..|+..+...-..+++..-...           .|.+  .-|++.. .   .+=++..+.
T Consensus       121 i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r-----------~gi~--iea~R~~~e~~ml~D~~q~l~  186 (527)
T KOG0505|consen  121 IVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMAR-----------QGID--IEAARKAEEQTMLDDARQWLN  186 (527)
T ss_pred             HHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHH-----------hccc--HHHHhhhhHHHHHHHHHHHHh
Confidence            999999999984 56777788887766544433333332221           1111  1111111 0   111222233


Q ss_pred             hCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchh-HHHHHHHhCCCChHHH
Q 009805          284 HYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSART-CNEIVRQIGKGDTQAV  362 (525)
Q Consensus       284 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~-~~~ll~~~~~~d~~~~  362 (525)
                      .|.+ .+.++..|.|.||+|+.+|..++..+|++.+.   .++.+|.+|+||||.|+..+... |..|+.  .+++++..
T Consensus       187 ~G~~-~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~---~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~--~ga~~d~~  260 (527)
T KOG0505|consen  187 AGAE-LDARHARGATALHVAAANGYTEVAALLLQAGY---SVNIKDYDGWTPLHAAAHWGQEDACELLVE--HGADMDAK  260 (527)
T ss_pred             cccc-ccccccccchHHHHHHhhhHHHHHHHHHHhcc---CcccccccCCCcccHHHHhhhHhHHHHHHH--hhcccchh
Confidence            4444 45566668888888888888888888887443   47788888888888888877444 465666  77778888


Q ss_pred             hccCCChHHHHhhcC
Q 009805          363 NKKKISVKHIELYGC  377 (525)
Q Consensus       363 n~~g~t~l~~a~~~~  377 (525)
                      +..|+||++++....
T Consensus       261 t~~g~~p~dv~dee~  275 (527)
T KOG0505|consen  261 TKMGETPLDVADEEE  275 (527)
T ss_pred             hhcCCCCccchhhhh
Confidence            888888888887543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=2.1e-20  Score=162.17  Aligned_cols=132  Identities=14%  Similarity=0.110  Sum_probs=117.7

Q ss_pred             cCccCCCChHhHHHHHcCCH----HHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHH---HHHHHHhcCCCCCCC-C
Q 009805          120 GLTNEEENTALHEAVQCGNL----DAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKM---VAEILEKCSSAAHDG-P  191 (525)
Q Consensus       120 ~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~---v~~Ll~~~~~~~~~~-~  191 (525)
                      +..+.++.++||.|++.|+.    +++++|++.|+.++ ..|..|+||||+|+..|+.+.   +++|+++|++++.++ .
T Consensus        14 ~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~-~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~   92 (166)
T PHA02743         14 VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLH-RYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELG   92 (166)
T ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhh-ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCC
Confidence            34567888999999999998    66778888888866 678899999999999988654   899999999999998 5


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH-hcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCc
Q 009805          192 NGKTALHAAVNSYAADVVEKLLA-KKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSS  253 (525)
Q Consensus       192 ~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  253 (525)
                      .|.||||+|+..++.+++++|+. .+.+ .+.++..|.||||+|+..++.+++++|++++++.
T Consensus        93 ~g~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~  154 (166)
T PHA02743         93 TGNTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRANGAVC  154 (166)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            89999999999999999999996 6777 6789999999999999999999999999999877

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.85  E-value=2.6e-20  Score=173.68  Aligned_cols=157  Identities=17%  Similarity=0.154  Sum_probs=119.7

Q ss_pred             ccccCCCCCcH-HHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCc----cCCCChHhHHHHHcCCHHHHHHH
Q 009805           71 LIQTNAKGDSP-LHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLT----NEEENTALHEAVQCGNLDAVKIL  145 (525)
Q Consensus        71 l~~~~~~g~tp-Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~----~~~g~t~Lh~A~~~g~~~~v~~L  145 (525)
                      +..+|..|.|+ ||.|++.|+.+++++|++.|++               ++.+    +..|.||||+|+..|+.+++++|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAd---------------iN~~~~~sd~~g~TpLh~Aa~~~~~eivklL   89 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGAD---------------PEAPFPLSENSKTNPLIYAIDCDNDDAAKLL   89 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCC---------------ccccCcccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            34567777664 5666677888888888888887               3333    45788888888888888888888


Q ss_pred             HhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCC
Q 009805          146 MEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDD  225 (525)
Q Consensus       146 l~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~  225 (525)
                      +++|++++...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|++.++.+++..+..      +..+.
T Consensus        90 L~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~------~~~~~  163 (300)
T PHA02884         90 IRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICD------NEISN  163 (300)
T ss_pred             HHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC------Ccccc
Confidence            888888874445678888888888888888888888888888888888888888888887777655542      22455


Q ss_pred             CCCcHHHHHHHcCChhHHHHHhhcCC
Q 009805          226 CGWTPLHHSAYLGLKDITALLLEFDG  251 (525)
Q Consensus       226 ~g~tpL~~A~~~g~~~~v~~Ll~~~~  251 (525)
                      .+.+|++++   ++.++++.|++++.
T Consensus       164 ~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        164 FYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             cccChhhhh---ccHHHHHHHHHHHH
Confidence            667777765   35778888887655

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=8.6e-20  Score=170.25  Aligned_cols=157  Identities=10%  Similarity=0.062  Sum_probs=133.5

Q ss_pred             hcCccCCCCh-HhHHHHHcCCHHHHHHHHhcCCCCCCC---CCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCC-CCCC
Q 009805          119 LGLTNEEENT-ALHEAVQCGNLDAVKILMEAGPNFPYS---ANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD-GPNG  193 (525)
Q Consensus       119 l~~~~~~g~t-~Lh~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g  193 (525)
                      +..+|..|.| +||.|+..|+.+++++|+++|++++..   .+..|.||||+|+..|+.+++++|+++|++++.+ +..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            4567777776 566777889999999999999998743   2468999999999999999999999999999986 5689


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcC
Q 009805          194 KTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQG  273 (525)
Q Consensus       194 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g  273 (525)
                      .||||.|+..++.+++++|++.|++ ++.+|..|.||||+|+..++.+++..+...+.      +. .+.+|.+.+   +
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~---~  173 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMICDNEI------SN-FYKHPKKIL---I  173 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhcCCcc------cc-cccChhhhh---c
Confidence            9999999999999999999999998 68899999999999999999888876654332      22 567888875   4


Q ss_pred             CHHHHHHHHhhCC
Q 009805          274 HESLAGTIIAHYP  286 (525)
Q Consensus       274 ~~~~v~~Ll~~~~  286 (525)
                      +.++++.|+++..
T Consensus       174 n~ei~~~Lish~v  186 (300)
T PHA02884        174 NFDILKILVSHFI  186 (300)
T ss_pred             cHHHHHHHHHHHH
Confidence            7899999998875

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=7.6e-20  Score=159.49  Aligned_cols=133  Identities=19%  Similarity=0.251  Sum_probs=111.7

Q ss_pred             HhcCccCCCChHhHHHHHcCCHHHHHHHHhc------CCCCCCCCCCCCchHHHHHHHcCC----HHHHHHHHHhcCCCC
Q 009805          118 MLGLTNEEENTALHEAVQCGNLDAVKILMEA------GPNFPYSANVNGETPLYMAAARGS----KKMVAEILEKCSSAA  187 (525)
Q Consensus       118 ~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~------~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~  187 (525)
                      +++.+|..|.||||+|++.|+.++++.|+..      |++++ ..|..|.||||+|+..|+    .+++++|++.|++++
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in-~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin   91 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALN-ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN   91 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhh-ccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Confidence            3566788999999999999999999988642      45554 677889999999999998    588899999999998


Q ss_pred             CCCC-CCCcHHHHHHHcCCHHHHHHHHHh-cCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCC
Q 009805          188 HDGP-NGKTALHAAVNSYAADVVEKLLAK-KRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGS  252 (525)
Q Consensus       188 ~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  252 (525)
                      .++. .|.||||+|+..++.+++++|+.. +.+ .+..|..|+||||+|+..++.+++++|++.+..
T Consensus        92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8875 899999999999999999999974 666 577888899999999999999999998886544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=4.9e-20  Score=158.51  Aligned_cols=138  Identities=19%  Similarity=0.163  Sum_probs=110.7

Q ss_pred             ccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCH---HHHHHHHh
Q 009805           71 LIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNL---DAVKILME  147 (525)
Q Consensus        71 l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~  147 (525)
                      ...+|.+|.||||+|++.|+  +++++...+.....        ....+..+|.+|.||||+|+..|+.   +++++|++
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~--------~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~   79 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGG--VTDLLAFKNAISDE--------NRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLME   79 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcch--------hHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHH
Confidence            45678899999999999998  34444433321110        1123456789999999999999986   46889999


Q ss_pred             cCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHh-cCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 009805          148 AGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK-CSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH  218 (525)
Q Consensus       148 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  218 (525)
                      .|++++...+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++.+++
T Consensus        80 ~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         80 WGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             cCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99998743336899999999999999999999984 899999999999999999999999999999988865

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=5.9e-20  Score=157.98  Aligned_cols=136  Identities=22%  Similarity=0.260  Sum_probs=111.1

Q ss_pred             cccccCCCCchhhhhhhcccccccCCchhhHHHHHHH---HHhCCccccccCCCCCcHHHHHHHcCChh---HHHHHHHh
Q 009805           27 SIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQI---LEICPSLLIQTNAKGDSPLHAAAKCGRPA---VVKVLIEF  100 (525)
Q Consensus        27 ~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~---~~~~~~~l~~~~~~g~tpLh~A~~~g~~~---~v~~Ll~~  100 (525)
                      .+..|.+|.||||+|++.       |+.  ++.+...   ....+..+..+|.+|.||||+|+..|+.+   ++++|++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~-------g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~   80 (154)
T PHA02736         10 ASEPDIEGENILHYLCRN-------GGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW   80 (154)
T ss_pred             HHhcCCCCCCHHHHHHHh-------CCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc
Confidence            345666899999999999       973  2332211   11123345668999999999999999874   68899999


Q ss_pred             hhcCChhHhhhhhhhHHHhcCcc-CCCChHhHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCchHHHHHHHcCCHHHHHH
Q 009805          101 AKKQPTAMKCCAKTAWQMLGLTN-EEENTALHEAVQCGNLDAVKILMEA-GPNFPYSANVNGETPLYMAAARGSKKMVAE  178 (525)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  178 (525)
                      +++               ++.++ ..|+||||+|+..|+.+++++|+++ |++++ ..+..|.||||+|+..|+.+++++
T Consensus        81 gad---------------in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n-~~~~~g~tpL~~A~~~~~~~i~~~  144 (154)
T PHA02736         81 GAD---------------INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME-ILNYAFKTPYYVACERHDAKMMNI  144 (154)
T ss_pred             CCC---------------ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc-cccCCCCCHHHHHHHcCCHHHHHH
Confidence            987               56677 5899999999999999999999984 88876 788899999999999999999999


Q ss_pred             HHHhcCCCC
Q 009805          179 ILEKCSSAA  187 (525)
Q Consensus       179 Ll~~~~~~~  187 (525)
                      |+++|++.+
T Consensus       145 Ll~~ga~~~  153 (154)
T PHA02736        145 LRAKGAQCK  153 (154)
T ss_pred             HHHcCCCCC
Confidence            999998754

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=2.7e-18  Score=139.30  Aligned_cols=142  Identities=24%  Similarity=0.239  Sum_probs=113.5

Q ss_pred             HHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCc
Q 009805           82 LHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGE  161 (525)
Q Consensus        82 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  161 (525)
                      +..|+..+....|+.|++..++              .++.+|.+|.||||-|+.+|+.+||+.|+..|++.. .+...|+
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an--------------~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~-a~T~~GW  131 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKAN--------------HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE-AKTNEGW  131 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccc--------------cccccccccccHHHHHHhcCchHHHHHHHHccCCcc-cccccCc
Confidence            5678888888888888887665              277888888999999998999999988888888876 6667888


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCH-HHHHHHHHhcCcCcccCCCCCCcHHHHHHHcC
Q 009805          162 TPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAA-DVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG  238 (525)
Q Consensus       162 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g  238 (525)
                      ||||.||...+.+++-+|+++|++++.......||||.|+...+. ..+.+|+......+...+..+.||+..|-+.+
T Consensus       132 TPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  132 TPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             cchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            999999888888888888888888888888888888888876654 45666666555446667777888888877654

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.75  E-value=2.4e-17  Score=165.05  Aligned_cols=197  Identities=25%  Similarity=0.329  Sum_probs=159.4

Q ss_pred             chhhhhhhcccccccCCchhhHHHHHHHHH-----hCCccccccCCCCCcHHHHHHH---cCChhHHHHHHHhhhcCChh
Q 009805           36 TVLHVNIARQSLKNKEGESVSTKFVEQILE-----ICPSLLIQTNAKGDSPLHAAAK---CGRPAVVKVLIEFAKKQPTA  107 (525)
Q Consensus        36 t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~-----~~~~~l~~~~~~g~tpLh~A~~---~g~~~~v~~Ll~~~~~~~~~  107 (525)
                      .++..|...       +..+..+.++....     ..-..++.+..-|+|.||.|.-   .++.++++.|++..+...++
T Consensus       103 ~~~~~~~~~-------~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind  175 (782)
T KOG3676|consen  103 DALFIADSE-------GALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLIND  175 (782)
T ss_pred             hhhhhcccc-------ccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhh
Confidence            444555555       66665555544221     1123456677889999999997   45778999999987653332


Q ss_pred             HhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCC--------CC--------------CCCchHHH
Q 009805          108 MKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYS--------AN--------------VNGETPLY  165 (525)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~--------~~--------------~~g~tpL~  165 (525)
                      +          .......|+||||.|+.+.+.++|++|++.|+|++..        .|              ..|+.||.
T Consensus       176 ~----------~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLS  245 (782)
T KOG3676|consen  176 I----------YTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLS  245 (782)
T ss_pred             h----------hhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchH
Confidence            2          2334568999999999999999999999999987521        11              24789999


Q ss_pred             HHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc-CcccCCCCCCcHHHHHHHcCChhHHH
Q 009805          166 MAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH-LTRERDDCGWTPLHHSAYLGLKDITA  244 (525)
Q Consensus       166 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~-~~~~~d~~g~tpL~~A~~~g~~~~v~  244 (525)
                      +||..++.|++++|+++|+|++.+|.+|+|.||..+..-..++..++++.++. +...+|..|.|||.+|+..|..++.+
T Consensus       246 fAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~  325 (782)
T KOG3676|consen  246 FAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQ  325 (782)
T ss_pred             HHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999887 34678899999999999999999999


Q ss_pred             HHhhc
Q 009805          245 LLLEF  249 (525)
Q Consensus       245 ~Ll~~  249 (525)
                      .+++.
T Consensus       326 ~ile~  330 (782)
T KOG3676|consen  326 HILER  330 (782)
T ss_pred             HHHHh
Confidence            99987

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=1.3e-18  Score=152.50  Aligned_cols=134  Identities=20%  Similarity=0.223  Sum_probs=109.0

Q ss_pred             HHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHH
Q 009805          234 SAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLK  313 (525)
Q Consensus       234 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~  313 (525)
                      -|+.|+.--|++.++......+..++ .|++|||+||+.|+..+++.|+.+|+. ++..+....||||+|+.+|+.++++
T Consensus         7 wcregna~qvrlwld~tehdln~gdd-hgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen    7 WCREGNAFQVRLWLDDTEHDLNVGDD-HGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             hhhcCCeEEEEEEecCcccccccccc-cCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHH
Confidence            35556655566666655555455555 789999999999999999999999988 7788888889999999999999999


Q ss_pred             HHhhCccccccccccCCCCChHHHHHHhcCchh-HHHHHHHhCCCChHHHhccCCChHHHHh
Q 009805          314 RLLKDPLYKSFIDEKNEMGNTPLHILATLSART-CNEIVRQIGKGDTQAVNKKKISVKHIEL  374 (525)
Q Consensus       314 ~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~-~~~ll~~~~~~d~~~~n~~g~t~l~~a~  374 (525)
                      .|++   .++++|+.++.|+|||||||-.|... +..|+.  .|+-+++.|++|.||++.|.
T Consensus        85 kll~---~kadvnavnehgntplhyacfwgydqiaedli~--~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   85 KLLS---RKADVNAVNEHGNTPLHYACFWGYDQIAEDLIS--CGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHH---HhcccchhhccCCCchhhhhhhcHHHHHHHHHh--ccceeeecccCCCCchhhhc
Confidence            8887   56779999999999999999888554 488888  88888999999999999886

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.74  E-value=3.7e-17  Score=132.76  Aligned_cols=145  Identities=24%  Similarity=0.197  Sum_probs=105.4

Q ss_pred             HhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHH
Q 009805          129 ALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADV  208 (525)
Q Consensus       129 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~  208 (525)
                      -+-.|+..+....|+.||+..++....+|.+|.||||.|+.+|+.+|++.|+..|++++.+...|+||||-|+...+.++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            35677788888888888888888777888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhcCcCcccCCCCCCcHHHHHHHcCC-hhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCH
Q 009805          209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGL-KDITALLLEFDGSSALILDKDRKMTALLMAASQGHE  275 (525)
Q Consensus       209 ~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~  275 (525)
                      +-+|++++++ ++.......||||.|+...+ ...+++|+............ .+.||+.+|-+.+-.
T Consensus       146 a~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn-~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  146 AGRLLQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNN-LEETAFDIARRTSMS  211 (228)
T ss_pred             HHHHHhccCc-ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcC-ccchHHHHHHHhhhh
Confidence            8888888888 56666667788888887665 34455555432222122222 566777777665443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.73  E-value=3.5e-17  Score=163.88  Aligned_cols=205  Identities=19%  Similarity=0.185  Sum_probs=162.6

Q ss_pred             hHHHHHHHcCCcchhhhhhhhc---------cccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccc
Q 009805            3 PKLYEAATNGEIEPFNGIAKDN---------LRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQ   73 (525)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~---------~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~   73 (525)
                      +.+..|...|.++.+..+++.+         -+.+.+..-|.|+||.|.-+    ..+++.++++.|++..+   .+++.
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~----~~~~~n~la~~LL~~~p---~lind  175 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLN----LSDGHNELARVLLEIFP---KLIND  175 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhc----CchhHHHHHHHHHHHhH---HHhhh
Confidence            4567788888888888777643         23334445799999999875    33488899999977543   44433


Q ss_pred             ----cCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHH--Hh-cCcc-----CCCChHhHHHHHcCCHHH
Q 009805           74 ----TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQ--ML-GLTN-----EEENTALHEAVQCGNLDA  141 (525)
Q Consensus        74 ----~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~--~l-~~~~-----~~g~t~Lh~A~~~g~~~~  141 (525)
                          ....|.||||+|+.+.+.++|++|++.|++.+.......-...+  .. ...|     ..|+.||-+|+..++.|+
T Consensus       176 ~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~ei  255 (782)
T KOG3676|consen  176 IYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEI  255 (782)
T ss_pred             hhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHH
Confidence                34569999999999999999999999999865432111000000  00 1111     247899999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 009805          142 VKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSS--AAHDGPNGKTALHAAVNSYAADVVEKLLAK  215 (525)
Q Consensus       142 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  215 (525)
                      +++|+++|+|++ .+|..|+|.||..+..-..++.++++++|++  ...++..|.|||..|++-|..++.+.+++.
T Consensus       256 vrlLl~~gAd~~-aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  256 VRLLLAHGADPN-AQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHhcCCCCC-ccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999987 8999999999999999999999999999999  788999999999999999999999999998

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.71  E-value=2.9e-17  Score=144.13  Aligned_cols=137  Identities=24%  Similarity=0.263  Sum_probs=115.0

Q ss_pred             HHHHHHcCCcchhhhhhhh-ccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHH
Q 009805            5 LYEAATNGEIEPFNGIAKD-NLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLH   83 (525)
Q Consensus         5 L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh   83 (525)
                      ++.=|+.|+.=.|+..+++ .-+.++.|..|.+|||+|++.       |+..+++.|+..    +.-++..|.-.+||||
T Consensus         4 if~wcregna~qvrlwld~tehdln~gddhgfsplhwaake-------gh~aivemll~r----garvn~tnmgddtplh   72 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKE-------GHVAIVEMLLSR----GARVNSTNMGDDTPLH   72 (448)
T ss_pred             hhhhhhcCCeEEEEEEecCcccccccccccCcchhhhhhhc-------ccHHHHHHHHhc----ccccccccCCCCcchh
Confidence            4445677777777776665 555667777899999999999       999999999774    6777888888899999


Q ss_pred             HHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchH
Q 009805           84 AAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETP  163 (525)
Q Consensus        84 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp  163 (525)
                      +|+..||.++|+.|+++.++               ++..|+.|+|||||||..|...+++-|+..|+.++ ..+++|.||
T Consensus        73 laaahghrdivqkll~~kad---------------vnavnehgntplhyacfwgydqiaedli~~ga~v~-icnk~g~tp  136 (448)
T KOG0195|consen   73 LAAAHGHRDIVQKLLSRKAD---------------VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN-ICNKKGMTP  136 (448)
T ss_pred             hhhhcccHHHHHHHHHHhcc---------------cchhhccCCCchhhhhhhcHHHHHHHHHhccceee-ecccCCCCc
Confidence            99999999999999998887               67789999999999999999999999999998876 778899999


Q ss_pred             HHHHH
Q 009805          164 LYMAA  168 (525)
Q Consensus       164 L~~A~  168 (525)
                      |..|-
T Consensus       137 ldkak  141 (448)
T KOG0195|consen  137 LDKAK  141 (448)
T ss_pred             hhhhc
Confidence            88763

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=5.2e-16  Score=128.52  Aligned_cols=123  Identities=33%  Similarity=0.522  Sum_probs=76.5

Q ss_pred             cCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCC
Q 009805           74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFP  153 (525)
Q Consensus        74 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  153 (525)
                      +|.+|.||||+|+..|+.+++++|++.+..               .+..+..|.||||+|+..++.+++++|++.++.++
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~---------------~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~   67 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD---------------VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN   67 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC---------------CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            345566666666666666666666666554               23455666666666666666666666666665443


Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 009805          154 YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKL  212 (525)
Q Consensus       154 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  212 (525)
                       ..+..|.||+|+|+..++.+++++|++++.+.+..+..|.||++.|+..++.+++++|
T Consensus        68 -~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          68 -ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             -ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence             3445566666666666666666666666655555666666666666666666666554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=2.3e-16  Score=121.95  Aligned_cols=88  Identities=39%  Similarity=0.548  Sum_probs=45.7

Q ss_pred             HHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCc
Q 009805           82 LHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGE  161 (525)
Q Consensus        82 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  161 (525)
                      ||+|++.|+.+++++|++.+.+               ++.    |+||||+|+..|+.+++++|+++|++++ ..+..|+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~---------------~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~   60 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD---------------INL----GNTALHYAAENGNLEIVKLLLENGADIN-SQDKNGN   60 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST---------------TTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTSS
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC---------------CCC----CCCHHHHHHHcCCHHHHHHHHHhccccc-ccCCCCC
Confidence            4555555555555555554433               111    5555555555555555555555555543 3445555


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCC
Q 009805          162 TPLYMAAARGSKKMVAEILEKCSSAAHD  189 (525)
Q Consensus       162 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~  189 (525)
                      ||||+|+..|+.+++++|+++|++++.+
T Consensus        61 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   61 TALHYAAENGNLEIVKLLLEHGADVNIR   88 (89)
T ss_dssp             BHHHHHHHTTHHHHHHHHHHTTT-TTSS
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            5555555555555555555555555443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.68  E-value=1.5e-15  Score=125.78  Aligned_cols=124  Identities=36%  Similarity=0.526  Sum_probs=101.2

Q ss_pred             ccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHH
Q 009805          122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAV  201 (525)
Q Consensus       122 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  201 (525)
                      +|.+|.||||+|+..|+.+++++|++.+++.. ..+..|.+|+|.|+..++.+++++|++.+++++..+..|.||+|.|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~-~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            46778888888888888888888888887763 66778888888888888888888888888877777788888888888


Q ss_pred             HcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHh
Q 009805          202 NSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL  247 (525)
Q Consensus       202 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  247 (525)
                      ..++.+++++|++.+.+ .+..+..+.||+++|...++.+++++|+
T Consensus        82 ~~~~~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          82 RNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            88888888888887755 4556677888888888888777777764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.67  E-value=4.7e-16  Score=120.20  Aligned_cols=85  Identities=35%  Similarity=0.505  Sum_probs=74.5

Q ss_pred             hHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 009805          130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVV  209 (525)
Q Consensus       130 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  209 (525)
                      ||+|++.|+.+++++|++.+.++..     |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            7899999999999999998877653     88899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcC
Q 009805          210 EKLLAKKRHL  219 (525)
Q Consensus       210 ~~Ll~~~~~~  219 (525)
                      ++|+++++++
T Consensus        76 ~~Ll~~g~~~   85 (89)
T PF12796_consen   76 KLLLEHGADV   85 (89)
T ss_dssp             HHHHHTTT-T
T ss_pred             HHHHHcCCCC
Confidence            9999988773

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.50  E-value=1.1e-13  Score=100.20  Aligned_cols=103  Identities=23%  Similarity=0.224  Sum_probs=89.1

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHH
Q 009805          128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAAD  207 (525)
Q Consensus       128 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  207 (525)
                      --+.+++++|..+-|+.....|-+++.  -..|++|||+|+..|+.+++++|+..|++++.+|+.|-|||..|+..|+.+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~--~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNE--IYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHH--HhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            346788999999999999999877653  347999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcCcccCCCCCCcHHHH
Q 009805          208 VVEKLLAKKRHLTRERDDCGWTPLHH  233 (525)
Q Consensus       208 ~~~~Ll~~~~~~~~~~d~~g~tpL~~  233 (525)
                      ++++|++.|++ ...+..+|.+.+..
T Consensus        82 cVklLL~~GAd-rt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   82 CVKLLLQNGAD-RTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHHHcCcc-cceeCCCchhHHhh
Confidence            99999999998 46666777765543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.49  E-value=1.3e-13  Score=99.91  Aligned_cols=104  Identities=23%  Similarity=0.292  Sum_probs=91.5

Q ss_pred             cHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q 009805           80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN  159 (525)
Q Consensus        80 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  159 (525)
                      --+.+++++|..+-|+..+..+-+.               +- -..|.+|||+|+-.|..+++++|+..|++++ .+|+.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nV---------------n~-~~ggR~plhyAAD~GQl~ilefli~iGA~i~-~kDKy   66 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNV---------------NE-IYGGRTPLHYAADYGQLSILEFLISIGANIQ-DKDKY   66 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccH---------------HH-HhCCcccchHhhhcchHHHHHHHHHhccccC-Ccccc
Confidence            3466889999999999999888542               11 2378999999999999999999999999987 78999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHH
Q 009805          160 GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAA  200 (525)
Q Consensus       160 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  200 (525)
                      |.|||..|+..||.++|++|+++|++-..+.++|.+.+..+
T Consensus        67 gITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   67 GITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             CCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            99999999999999999999999999999999998876654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.49  E-value=6.4e-13  Score=122.60  Aligned_cols=130  Identities=31%  Similarity=0.452  Sum_probs=95.9

Q ss_pred             cccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCC-----HHHHHHHH
Q 009805           72 IQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGN-----LDAVKILM  146 (525)
Q Consensus        72 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~-----~~~v~~Ll  146 (525)
                      ...+..+.+++|.++..+..+++++++..+.+               ++.+|.+|.||||+|+..++     .++++.|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll  131 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGAD---------------VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLL  131 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCC---------------cccccCCCCcHHHHHHhcCCcccchHHHHHHHH
Confidence            34555577777777777777777777777766               45677777777777777777     77777777


Q ss_pred             hcCC--CCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 009805          147 EAGP--NFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKK  216 (525)
Q Consensus       147 ~~~~--~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  216 (525)
                      +.|+  +.....+..|.||||+|+..|+.++++.|++.+++++.++..|.|+++.|+..++.++++.+++.+
T Consensus       132 ~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         132 EAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            7777  455566777777777777777777777777777777777777777777777777777777777654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.45  E-value=4.6e-12  Score=116.85  Aligned_cols=129  Identities=30%  Similarity=0.374  Sum_probs=102.8

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHHhcC--cCcccCCCCC
Q 009805          155 SANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYA-----ADVVEKLLAKKR--HLTRERDDCG  227 (525)
Q Consensus       155 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~~~--~~~~~~d~~g  227 (525)
                      ..+..+.++++.++..+..+++++++..+++++.++..|.||||.|+..++     .++++.|++.++  +..+.+|..|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            455567888888888888888888888888888888888888888888888     888888888888  5567778888


Q ss_pred             CcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhC
Q 009805          228 WTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHY  285 (525)
Q Consensus       228 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  285 (525)
                      .||||+|+..|+.++++.|++.+++. ...+. .|.|+++.|+..++.++++.+++.+
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~-~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADP-NSRNS-YGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCC-ccccc-CCCcchhhhcccchHHHHHHHHhcC
Confidence            88888888888888888888887766 33333 5778888888888877777777764

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.37  E-value=5.2e-12  Score=111.38  Aligned_cols=123  Identities=21%  Similarity=0.225  Sum_probs=113.5

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 009805           78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSAN  157 (525)
Q Consensus        78 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  157 (525)
                      -..||..++..|..+-...|+.....               ++.+|..|.++|..|+..|+.++|+.|++.|+|++...+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~---------------vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qh   76 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQ---------------VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQH   76 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhh---------------hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccc
Confidence            45789999999999999999887554               678999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 009805          158 VNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAK  215 (525)
Q Consensus       158 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  215 (525)
                      ..+.||||+|+.+|+.++.+.|++.|+.....+.-|+|+-..|+.-|+.++|..+-+.
T Consensus        77 g~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   77 GTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999998877544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.33  E-value=7e-12  Score=132.29  Aligned_cols=104  Identities=23%  Similarity=0.323  Sum_probs=88.0

Q ss_pred             HHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q 009805           81 PLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNG  160 (525)
Q Consensus        81 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  160 (525)
                      .|+.|+..|+.+.++.|++.+++               ++.+|..|.||||+|+..|+.+++++|+++|++++ ..|..|
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad---------------in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn-~~d~~G  148 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD---------------PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-LLDKDG  148 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC---------------CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCC
Confidence            47888999999999999998877               56788899999999999999999999999999876 678889


Q ss_pred             chHHHHHHHcCCHHHHHHHHHh-------cCCCCCCCCCCCcHHHHH
Q 009805          161 ETPLYMAAARGSKKMVAEILEK-------CSSAAHDGPNGKTALHAA  200 (525)
Q Consensus       161 ~tpL~~A~~~g~~~~v~~Ll~~-------~~~~~~~~~~g~t~L~~A  200 (525)
                      .||||+|+..|+.+++++|+++       +++.+..+..|.+|+..+
T Consensus       149 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        149 KTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             CCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            9999999999999999999988       667666666666665433

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.33  E-value=3.2e-12  Score=87.87  Aligned_cols=54  Identities=41%  Similarity=0.680  Sum_probs=45.1

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHH
Q 009805           78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILM  146 (525)
Q Consensus        78 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  146 (525)
                      |.||||+|++.|+.+++++|++.+.+               ++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d---------------in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD---------------INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG---------------TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC---------------CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999999877               6678999999999999999999999986

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.33  E-value=1.2e-11  Score=130.43  Aligned_cols=106  Identities=24%  Similarity=0.307  Sum_probs=93.3

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHH
Q 009805          128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAAD  207 (525)
Q Consensus       128 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  207 (525)
                      +.|+.|+..|+.++++.|++.|++++ ..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin-~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPN-CRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            45889999999999999999999987 67889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-------cCcCcccCCCCCCcHHHHHH
Q 009805          208 VVEKLLAK-------KRHLTRERDDCGWTPLHHSA  235 (525)
Q Consensus       208 ~~~~Ll~~-------~~~~~~~~d~~g~tpL~~A~  235 (525)
                      ++++|+++       +++ .+..+..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCC-CCccccCCCCccchhh
Confidence            99999998       554 3455555666655443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.31  E-value=5e-12  Score=86.87  Aligned_cols=53  Identities=38%  Similarity=0.590  Sum_probs=22.5

Q ss_pred             CChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHH
Q 009805          126 ENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEI  179 (525)
Q Consensus       126 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  179 (525)
                      |.||||+|++.|+.+++++|+++|.+++ ..|.+|.||||+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din-~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADIN-AQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHccCHHHHHHH
Confidence            3444455555445555555444444443 2244444444444444444444444

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.29  E-value=2.6e-11  Score=107.04  Aligned_cols=120  Identities=25%  Similarity=0.319  Sum_probs=81.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCC
Q 009805          160 GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGL  239 (525)
Q Consensus       160 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~  239 (525)
                      -.+||.-++..+..+-...|++.-.+++.+|+.|.++|..|+..|+.++++.|++.|+|+...++..+.||||+|+..|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            34566666666666666666666555666777777777777777777777777777777666666677777777777777


Q ss_pred             hhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHH
Q 009805          240 KDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTI  281 (525)
Q Consensus       240 ~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  281 (525)
                      .++.++|++.|+..... +. -|+|+-.+|+.-|+.+.|..+
T Consensus        92 ~dvcrllldaGa~~~~v-Ns-vgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   92 QDVCRLLLDAGARMYLV-NS-VGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             chHHHHHHhccCccccc-cc-hhhhHHHHHHHhcchHHHHHH
Confidence            77777777777665332 22 467777777777776666554

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=1.2e-11  Score=117.76  Aligned_cols=98  Identities=20%  Similarity=0.170  Sum_probs=47.0

Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 009805          133 AVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKL  212 (525)
Q Consensus       133 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  212 (525)
                      |+..|.+++|+..+..-.|.. ..|..|.|+||-|+..||.+||+||++.|+++|..|.+|+||||+|+.+++..+.+.|
T Consensus       557 aaLeGEldlVq~~i~ev~DpS-qpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqL  635 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTDPS-QPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQL  635 (752)
T ss_pred             hhhcchHHHHHHHHHhhcCCC-CCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHH
Confidence            444455555555444433322 3444455555555555555555555555555555555555555555555555555555


Q ss_pred             HHhcCcCcccCCCCCCcHH
Q 009805          213 LAKKRHLTRERDDCGWTPL  231 (525)
Q Consensus       213 l~~~~~~~~~~d~~g~tpL  231 (525)
                      ++.|+.+.-..-.++.|+.
T Consensus       636 Ve~GaavfAsTlSDmeTa~  654 (752)
T KOG0515|consen  636 VESGAAVFASTLSDMETAA  654 (752)
T ss_pred             HhccceEEeeecccccchh
Confidence            5554443333333344443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.28  E-value=3.4e-12  Score=88.11  Aligned_cols=56  Identities=27%  Similarity=0.337  Sum_probs=22.3

Q ss_pred             HHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHH
Q 009805          281 IIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHIL  339 (525)
Q Consensus       281 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A  339 (525)
                      |+++++..++.+|..|+||||+|+.+|+.+++++|++   .+++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~---~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ---NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH---CT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH---CcCCCCCCcCCCCCHHHhC
Confidence            3455544456666666666666666666666666664   3344666666666666665

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=9.8e-12  Score=118.31  Aligned_cols=118  Identities=27%  Similarity=0.289  Sum_probs=94.3

Q ss_pred             HHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCc
Q 009805           82 LHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGE  161 (525)
Q Consensus        82 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  161 (525)
                      |.-|+..|.+++|+..+....+               ....|.+|-|+||-|+..||.+||++|++.|++++ ..|.+|+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D---------------pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSdGW  617 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD---------------PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSDGW  617 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC---------------CCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCCCC
Confidence            4557788899999988887766               44578888999999999999999999999999887 7888899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCC-CCCCCCcHHHHH--HHcCCHHHHHHHHHh
Q 009805          162 TPLYMAAARGSKKMVAEILEKCSSAAH-DGPNGKTALHAA--VNSYAADVVEKLLAK  215 (525)
Q Consensus       162 tpL~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A--~~~~~~~~~~~Ll~~  215 (525)
                      ||||+|+..++..+++.|++.|+-+.. .-.++.|+...|  .+.|..++.++|...
T Consensus       618 TPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  618 TPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             chhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            999999999999999999998866543 345677777665  346778888888654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.27  E-value=4.7e-12  Score=87.40  Aligned_cols=56  Identities=32%  Similarity=0.461  Sum_probs=24.4

Q ss_pred             HHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHH
Q 009805          145 LMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAA  200 (525)
Q Consensus       145 Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  200 (525)
                      |+++|+......|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45555222336666777777777777777777777777777777777777777765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.77  E-value=3.4e-08  Score=93.89  Aligned_cols=96  Identities=23%  Similarity=0.305  Sum_probs=88.6

Q ss_pred             cCccCCCChH------hHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCC
Q 009805          120 GLTNEEENTA------LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG  193 (525)
Q Consensus       120 ~~~~~~g~t~------Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g  193 (525)
                      ..+|.+|.+.      ||..++.|+.+..-.||..|++.++.....|.||||.|++.|+.--+++|+-+|+|+...|.+|
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G  200 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG  200 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence            4567777654      8999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHh
Q 009805          194 KTALHAAVNSYAADVVEKLLAK  215 (525)
Q Consensus       194 ~t~L~~A~~~~~~~~~~~Ll~~  215 (525)
                      .||+.+|-..|+-++.+.|++.
T Consensus       201 mtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHHH
Confidence            9999999999999988888764

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.77  E-value=1.9e-08  Score=96.94  Aligned_cols=101  Identities=27%  Similarity=0.397  Sum_probs=77.6

Q ss_pred             CccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHh
Q 009805           68 PSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILME  147 (525)
Q Consensus        68 ~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  147 (525)
                      +..+-.++.+..|.||+|+.-|+-++|+++++++..             +++++.|+.|.|+||.|+..++-.++++|++
T Consensus       889 gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~-------------elld~~de~get~lhkaa~~~~r~vc~~lvd  955 (1004)
T KOG0782|consen  889 GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS-------------ELLDMADETGETALHKAACQRNRAVCQLLVD  955 (1004)
T ss_pred             CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH-------------HHHHHHhhhhhHHHHHHHHhcchHHHHHHHh
Confidence            444556677778888888888888888888888754             4577778888888888888888888888888


Q ss_pred             cCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHh
Q 009805          148 AGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK  182 (525)
Q Consensus       148 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  182 (525)
                      .|+.+- ..|..|.||-.-|-+.|+.++..||-++
T Consensus       956 agasl~-ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  956 AGASLR-KTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             cchhhe-ecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            888764 6677788888888888888887777543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.69  E-value=2.8e-08  Score=95.92  Aligned_cols=123  Identities=19%  Similarity=0.244  Sum_probs=107.8

Q ss_pred             ChHHHHHHHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcH
Q 009805            2 EPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSP   81 (525)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tp   81 (525)
                      ...|..|+..+|+-.++....+|-+...++.+..+.||+|+..       |+-|+|+||+++  ..+.++...|..|+|+
T Consensus       867 seeil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~t-------g~~eivkyildh--~p~elld~~de~get~  937 (1004)
T KOG0782|consen  867 SEEILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKT-------GNGEIVKYILDH--GPSELLDMADETGETA  937 (1004)
T ss_pred             cHHHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhc-------CChHHHHHHHhc--CCHHHHHHHhhhhhHH
Confidence            3567889999988777777777777777888999999999999       999999999774  3345678899999999


Q ss_pred             HHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhc
Q 009805           82 LHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEA  148 (525)
Q Consensus        82 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  148 (525)
                      ||-|+..++..+.++|++.|+.               +...|..|.||-.-|-+.|+.+...+|-..
T Consensus       938 lhkaa~~~~r~vc~~lvdagas---------------l~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  938 LHKAACQRNRAVCQLLVDAGAS---------------LRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchHHHHHHHhcchh---------------heecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999999987               777899999999999999999999988653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.67  E-value=1.5e-08  Score=102.11  Aligned_cols=86  Identities=21%  Similarity=0.197  Sum_probs=80.9

Q ss_pred             HHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcH
Q 009805          117 QMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTA  196 (525)
Q Consensus       117 ~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~  196 (525)
                      +..+++|..|.|+||.|+..+..+++++|+++|.++.......|.||||-|+-+|+.|++..|+.+|......|++|.+|
T Consensus        43 n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsp  122 (1267)
T KOG0783|consen   43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSP  122 (1267)
T ss_pred             hhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCH
Confidence            44778999999999999999999999999999999987677789999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 009805          197 LHAAVN  202 (525)
Q Consensus       197 L~~A~~  202 (525)
                      |..-++
T Consensus       123 lq~~~r  128 (1267)
T KOG0783|consen  123 LQFLSR  128 (1267)
T ss_pred             HHHHhh
Confidence            998876

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.62  E-value=4.9e-08  Score=92.43  Aligned_cols=90  Identities=23%  Similarity=0.253  Sum_probs=49.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcC
Q 009805          159 NGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG  238 (525)
Q Consensus       159 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g  238 (525)
                      ++..++.+|+..|+...++.+.-.|.|.+.+|.+.+|+||.|+..|+.+++++|++.....+..+|..|+|||.-|...+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            34445555555555555555555555555555555555555555555555555555544445555555555555555555


Q ss_pred             ChhHHHHHhh
Q 009805          239 LKDITALLLE  248 (525)
Q Consensus       239 ~~~~v~~Ll~  248 (525)
                      +.+++++|-+
T Consensus       585 h~~v~k~L~~  594 (622)
T KOG0506|consen  585 HKEVVKLLEE  594 (622)
T ss_pred             cHHHHHHHHH
Confidence            5555555554

>PF13606 Ank_3: Ankyrin repeat

Probab=98.59  E-value=7.2e-08  Score=56.41  Aligned_cols=28  Identities=36%  Similarity=0.574  Sum_probs=14.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhcCCCC
Q 009805          160 GETPLYMAAARGSKKMVAEILEKCSSAA  187 (525)
Q Consensus       160 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  187 (525)
                      |+||||+|+..|+.+++++|+++|++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            4455555555555555555555554443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.56  E-value=4.2e-08  Score=98.90  Aligned_cols=96  Identities=21%  Similarity=0.199  Sum_probs=71.9

Q ss_pred             HHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCc
Q 009805          209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPEC  288 (525)
Q Consensus       209 ~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  288 (525)
                      .-++-+.+....+..|..|+|+||.++..+..+++++|+++|.+. +..|...|+||||-|..+|+.+.+-.|+++|.. 
T Consensus        34 k~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-  111 (1267)
T KOG0783|consen   34 KGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-  111 (1267)
T ss_pred             HHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCCc-
Confidence            334445555667777788888888888888888888888887777 555555788888888888888888888888866 


Q ss_pred             cccccCCCCchhHHHHhc
Q 009805          289 YDLVDNGGWNVLHFLMVS  306 (525)
Q Consensus       289 ~~~~d~~g~t~Lh~A~~~  306 (525)
                      ....|++|..||...++-
T Consensus       112 L~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             eEEecccCCCHHHHHhhc
Confidence            677788888888776653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.53  E-value=1.2e-07  Score=55.53  Aligned_cols=29  Identities=41%  Similarity=0.618  Sum_probs=27.2

Q ss_pred             CCChHhHHHHHcCCHHHHHHHHhcCCCCC
Q 009805          125 EENTALHEAVQCGNLDAVKILMEAGPNFP  153 (525)
Q Consensus       125 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  153 (525)
                      +|+||||+|++.|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            58999999999999999999999999875

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.48  E-value=2.5e-07  Score=55.89  Aligned_cols=31  Identities=32%  Similarity=0.470  Sum_probs=18.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhcCCCCCCC
Q 009805          160 GETPLYMAAARGSKKMVAEILEKCSSAAHDG  190 (525)
Q Consensus       160 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  190 (525)
                      |.||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5556666666666666666666655555443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.47  E-value=1.8e-07  Score=88.70  Aligned_cols=94  Identities=15%  Similarity=0.057  Sum_probs=76.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHH
Q 009805          190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMA  269 (525)
Q Consensus       190 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A  269 (525)
                      +.++...+.+|++.|....++.+.-.+.+ .+.+|.+.+|+||.|+..|+.+++++|++.........+. .|+|||.-|
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDR-w~rtPlDdA  580 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDR-WGRTPLDDA  580 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhc-cCCCcchHh
Confidence            34566678888888888888888888877 5788888889999999889999999988866655566666 788999999


Q ss_pred             HhcCCHHHHHHHHhhC
Q 009805          270 ASQGHESLAGTIIAHY  285 (525)
Q Consensus       270 ~~~g~~~~v~~Ll~~~  285 (525)
                      ..-+|.+++++|-+..
T Consensus       581 ~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             HhcCcHHHHHHHHHHh
Confidence            8888888888887653

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.44  E-value=4.6e-07  Score=87.56  Aligned_cols=90  Identities=22%  Similarity=0.325  Sum_probs=77.3

Q ss_pred             chhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhh
Q 009805           36 TVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTA  115 (525)
Q Consensus        36 t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (525)
                      -|||+++..       ..++-....+. .+ ....+..+|..|.||||+|+..|+.+.++.|+..+++            
T Consensus        22 ~~lh~~~~~-------~~~~sl~~el~-~~-~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad------------   80 (560)
T KOG0522|consen   22 KPLHWAVVT-------TDSDSLEQELL-AK-VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD------------   80 (560)
T ss_pred             cccchhhhc-------cchhhHHHHHh-hh-hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC------------
Confidence            459999888       77777666554 23 4556788999999999999999999999999999998            


Q ss_pred             HHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcC
Q 009805          116 WQMLGLTNEEENTALHEAVQCGNLDAVKILMEAG  149 (525)
Q Consensus       116 ~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  149 (525)
                         +..+|..|++|||.|+..|+.+++..++.+.
T Consensus        81 ---v~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   81 ---VSIKNNEGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             ---ccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence               6789999999999999999999999888753

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.36  E-value=1.8e-06  Score=82.43  Aligned_cols=85  Identities=22%  Similarity=0.254  Sum_probs=78.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChh
Q 009805          163 PLYMAAARGSKKMVAEILEKCSSAAHDGP-NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKD  241 (525)
Q Consensus       163 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~  241 (525)
                      -||.+++.|+.+..--|+..|+++|+.++ .|.||||.|++.|+..-+++|+-+|++ +...|.+|.||+.+|-..|+-+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCCcHHHHHHhcCchH
Confidence            58999999999999999999999998765 599999999999999999999999999 7999999999999999999988


Q ss_pred             HHHHHhh
Q 009805          242 ITALLLE  248 (525)
Q Consensus       242 ~v~~Ll~  248 (525)
                      +.+.|++
T Consensus       215 laeRl~e  221 (669)
T KOG0818|consen  215 LAERLVE  221 (669)
T ss_pred             HHHHHHH
Confidence            8777765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.33  E-value=8.9e-07  Score=53.42  Aligned_cols=30  Identities=40%  Similarity=0.576  Sum_probs=28.0

Q ss_pred             CCChHhHHHHHcCCHHHHHHHHhcCCCCCC
Q 009805          125 EENTALHEAVQCGNLDAVKILMEAGPNFPY  154 (525)
Q Consensus       125 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  154 (525)
                      +|.||||+|+..|+.+++++|+++|++++.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            589999999999999999999999999863

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.25  E-value=8.6e-06  Score=83.69  Aligned_cols=130  Identities=16%  Similarity=0.166  Sum_probs=98.3

Q ss_pred             HHHHHHcCCcchhhhhhhh----ccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCc
Q 009805            5 LYEAATNGEIEPFNGIAKD----NLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDS   80 (525)
Q Consensus         5 L~~A~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~t   80 (525)
                      -..|++.||.-.|+..++.    ..+.+..|.-|.++||.|+.+       .+.|++++|+++    +..      . ..
T Consensus        29 fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~n-------enle~~eLLl~~----~~~------~-gd   90 (822)
T KOG3609|consen   29 FLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDN-------ENLELQELLLDT----SSE------E-GD   90 (822)
T ss_pred             HHHHHHcCChHHHHHHHHhccccccchhccChHhhhceeccccc-------ccHHHHHHHhcC----ccc------c-ch
Confidence            4579999999999999886    367778888899999999999       999999999773    211      1 45


Q ss_pred             HHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 009805           81 PLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSAN  157 (525)
Q Consensus        81 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  157 (525)
                      +|-+|++.|..+.|+.++.+....+....     ..+.-...-..+-|||..||..++.||+++|+++|..++...+
T Consensus        91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~-----~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~  162 (822)
T KOG3609|consen   91 ALLLAIAVGSVPLVELLLVHFVDAPYLER-----SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHD  162 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhcc-----ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcc
Confidence            88899999999999999997654211000     0000011223467999999999999999999999998765444

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.24  E-value=3.2e-06  Score=81.91  Aligned_cols=89  Identities=26%  Similarity=0.402  Sum_probs=72.8

Q ss_pred             cHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q 009805           80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN  159 (525)
Q Consensus        80 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  159 (525)
                      -|||.++.....+-...++.....             ..++.+|..|+||||.|+..|+.+.++.|+.+|+++. .+|..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~-------------~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~-~kN~~   87 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVS-------------LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS-IKNNE   87 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhh-------------ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc-ccccc
Confidence            459999988877755554443221             1266789999999999999999999999999999976 78999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHh
Q 009805          160 GETPLYMAAARGSKKMVAEILEK  182 (525)
Q Consensus       160 g~tpL~~A~~~g~~~~v~~Ll~~  182 (525)
                      |++|||.|+..|+.+++..++.+
T Consensus        88 gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   88 GWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             cccHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999988888765

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.17  E-value=5.5e-06  Score=80.76  Aligned_cols=90  Identities=21%  Similarity=0.259  Sum_probs=69.7

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcCCCCC---CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcC
Q 009805          128 TALHEAVQCGNLDAVKILMEAGPNFP---YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSY  204 (525)
Q Consensus       128 t~Lh~A~~~g~~~~v~~Ll~~~~~~~---~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  204 (525)
                      .-|.-|+...++..+-+||.+|....   ...+.+|+|+||+||..|++.+.++|+-+|+|+..+|..|+|+|.||-+.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            34566777777778888888775432   234456788888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHhcC
Q 009805          205 AADVVEKLLAKKR  217 (525)
Q Consensus       205 ~~~~~~~Ll~~~~  217 (525)
                      ..+++..|+++|.
T Consensus       706 sqec~d~llq~gc  718 (749)
T KOG0705|consen  706 SQECIDVLLQYGC  718 (749)
T ss_pred             cHHHHHHHHHcCC
Confidence            8888888888764

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.16  E-value=6.3e-06  Score=80.38  Aligned_cols=91  Identities=22%  Similarity=0.227  Sum_probs=79.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCC--CC--CCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHc
Q 009805          162 TPLYMAAARGSKKMVAEILEKCSS--AA--HDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYL  237 (525)
Q Consensus       162 tpL~~A~~~g~~~~v~~Ll~~~~~--~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~  237 (525)
                      .-|..|+...+...+-+|+.+|..  ++  ..+.+|.|+||.|++.|+..+.++|+=++.+ ...+|..|+|+|.||-+.
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchhhhhHhhc
Confidence            456778888888889999999843  33  3467889999999999999999999977777 789999999999999999


Q ss_pred             CChhHHHHHhhcCCCc
Q 009805          238 GLKDITALLLEFDGSS  253 (525)
Q Consensus       238 g~~~~v~~Ll~~~~~~  253 (525)
                      |..+++..|+++|...
T Consensus       705 ~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  705 GSQECIDVLLQYGCPD  720 (749)
T ss_pred             ccHHHHHHHHHcCCCc
Confidence            9999999999999876

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.04  E-value=1.4e-05  Score=82.19  Aligned_cols=123  Identities=15%  Similarity=0.142  Sum_probs=88.3

Q ss_pred             chhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhh
Q 009805           36 TVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTA  115 (525)
Q Consensus        36 t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (525)
                      --.-.|+++       |+.-.|+..++......-..+..|.-|+++|+.|+.+.+.+++++|++....            
T Consensus        27 ~~fL~a~E~-------gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~------------   87 (822)
T KOG3609|consen   27 KGFLLAHEN-------GDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE------------   87 (822)
T ss_pred             HHHHHHHHc-------CChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc------------
Confidence            344567788       8888888887743332335667888888888888888888888888887532            


Q ss_pred             HHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCC---------CCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCC
Q 009805          116 WQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNF---------PYSANVNGETPLYMAAARGSKKMVAEILEKCSSA  186 (525)
Q Consensus       116 ~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  186 (525)
                               . ..+|.+|+..|..+.|+.++.+-...         +...-..+.|||.+||..++.|+++.|+.+|+.+
T Consensus        88 ---------~-gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   88 ---------E-GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             ---------c-chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence                     1 35778888888888888888763321         1112234678888888888888888888888665


Q ss_pred             C
Q 009805          187 A  187 (525)
Q Consensus       187 ~  187 (525)
                      .
T Consensus       158 ~  158 (822)
T KOG3609|consen  158 P  158 (822)
T ss_pred             C
Confidence            4

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.96  E-value=1.3e-05  Score=74.22  Aligned_cols=73  Identities=29%  Similarity=0.437  Sum_probs=60.1

Q ss_pred             ChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHH
Q 009805          127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAA  200 (525)
Q Consensus       127 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  200 (525)
                      .--|.+|++.|+.+.|+.|++.|.+++ ..|....+||++|+..||.+++++|+++|+--....-+|...+.-|
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN-~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVN-AVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcc-hhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence            445889999999999999999999987 7888999999999999999999999999976444444555444333

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.71  E-value=3.8e-05  Score=80.84  Aligned_cols=129  Identities=22%  Similarity=0.302  Sum_probs=87.9

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHHh-cCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHH
Q 009805          155 SANVNGETPLYMAAARGSKKMVAEILEK-CSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHH  233 (525)
Q Consensus       155 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~  233 (525)
                      .....|++.+|+++..++..+++.+++- |.....-|.+|...+|.+ ..++.+.+-+++.....-.+.+|..|+||||+
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfc-a~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFC-AALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHh-hhcCCceeEEEEeecccccccccCCCCcccch
Confidence            4455678888888888888888777775 555555566677777773 44456666556555555567788888888888


Q ss_pred             HHHcCChhHHHHHhhcCCCcchhcc----cCCCCcHHHHHHhcCCHHHHHHHHhh
Q 009805          234 SAYLGLKDITALLLEFDGSSALILD----KDRKMTALLMAASQGHESLAGTIIAH  284 (525)
Q Consensus       234 A~~~g~~~~v~~Ll~~~~~~~~~~~----~~~g~tpL~~A~~~g~~~~v~~Ll~~  284 (525)
                      |+..|+..++..|.+.++......+    ...|.|+-..|-.+|+..+-.+|-+.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            8888888888888866655432222    13477888888888877776666554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.69  E-value=3.6e-05  Score=81.49  Aligned_cols=86  Identities=24%  Similarity=0.239  Sum_probs=59.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcC
Q 009805          159 NGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG  238 (525)
Q Consensus       159 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g  238 (525)
                      .|.|+||.|+..|...++++|+++|++++..|..|++|+|.+...|+...+..+++++++ .+..+.+|.+||++|....
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD-PNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccc-ccccCccCcchhhHHhhhc
Confidence            466777777777777777777777777777777777777777777777777777776666 5666777777777776654


Q ss_pred             ChhHHHH
Q 009805          239 LKDITAL  245 (525)
Q Consensus       239 ~~~~v~~  245 (525)
                      +.+++-+
T Consensus       734 ~~d~~~l  740 (785)
T KOG0521|consen  734 NADIVLL  740 (785)
T ss_pred             cccHHHH
Confidence            4444433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.68  E-value=9.2e-05  Score=68.84  Aligned_cols=73  Identities=26%  Similarity=0.386  Sum_probs=61.7

Q ss_pred             cHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q 009805           80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN  159 (525)
Q Consensus        80 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  159 (525)
                      --|..||+.|+.+.|++|++.|.+               +|..|....+||.+|+..||.++|++|+++|+-.. ....+
T Consensus        38 ~elceacR~GD~d~v~~LVetgvn---------------VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~-rdtf~  101 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVN---------------VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS-RDTFD  101 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCC---------------cchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc-ccccC
Confidence            358899999999999999998877               77899999999999999999999999999998754 44456


Q ss_pred             CchHHHHHH
Q 009805          160 GETPLYMAA  168 (525)
Q Consensus       160 g~tpL~~A~  168 (525)
                      |...++-|.
T Consensus       102 G~RC~YgaL  110 (516)
T KOG0511|consen  102 GDRCHYGAL  110 (516)
T ss_pred             cchhhhhhh
Confidence            766655443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.66  E-value=4.7e-05  Score=80.67  Aligned_cols=112  Identities=25%  Similarity=0.219  Sum_probs=83.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcC
Q 009805          159 NGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG  238 (525)
Q Consensus       159 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g  238 (525)
                      .+.+++-.+....+...+.+..        .-..|.++||.|+..+..-+.++|++.+++ .+..|..|++|||.+...|
T Consensus       630 ~~~~~~~~~~~~~~~~~~n~~~--------~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g  700 (785)
T KOG0521|consen  630 DGECLPRIATALAHGCCENWPV--------VLCIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASG  700 (785)
T ss_pred             Cccchhhhhhhhcchhhhccch--------hhhcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhc
Confidence            4555555555444333333221        234678999999999999999999999988 7889999999999999999


Q ss_pred             ChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHH
Q 009805          239 LKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTI  281 (525)
Q Consensus       239 ~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  281 (525)
                      +...+..+++++++. ...+. .|.+||++|....+.+++-.+
T Consensus       701 ~~~~~~~ll~~~a~~-~a~~~-~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  701 HTSIACLLLKRGADP-NAFDP-DGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             ccchhhhhccccccc-cccCc-cCcchhhHHhhhccccHHHHH
Confidence            999999999988887 44454 688999999777665554433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.66  E-value=0.00014  Score=61.22  Aligned_cols=61  Identities=23%  Similarity=0.210  Sum_probs=36.3

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHHhc-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 009805          155 SANVNGETPLYMAAARGSKKMVAEILEKC-SSAAHDGPNGKTALHAAVNSYAADVVEKLLAK  215 (525)
Q Consensus       155 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  215 (525)
                      ..|..|+||++.|+..|+.+.+.+|+++| +.+...|..|.+++.+|-+.|..+++..|.+.
T Consensus         7 ~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    7 ARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             chhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            45555666666666666666666666666 55555566666666666666666666665555

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.57  E-value=0.00018  Score=60.54  Aligned_cols=70  Identities=21%  Similarity=0.234  Sum_probs=62.7

Q ss_pred             hcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCC
Q 009805          119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAH  188 (525)
Q Consensus       119 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  188 (525)
                      ++.+|..|+|+|+.|+..|+.+.+.+|+.+|.-.....|..|.+.+.+|-+.|+.++++.|.+...+-..
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~   74 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSH   74 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCC
Confidence            7789999999999999999999999999999555568899999999999999999999999988655433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.55  E-value=0.00014  Score=76.65  Aligned_cols=122  Identities=16%  Similarity=0.101  Sum_probs=66.4

Q ss_pred             CCCCCCcHHHHHHHcCChhHHHHHhhc-CCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhH
Q 009805          223 RDDCGWTPLHHSAYLGLKDITALLLEF-DGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLH  301 (525)
Q Consensus       223 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh  301 (525)
                      ....|.+-+|+++..++...++.+++. +... ...+. .|.-.+|. |..++.+..-+++......++.+|.+||||||
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~-d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDR-DGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcc-cCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            334466666666666666666666664 2222 22232 34445555 44444454445554444446666666666666


Q ss_pred             HHHhcCCHHHHHHHhhCcccc---ccccccCCCCChHHHHHHhcCchhH
Q 009805          302 FLMVSLHESKLKRLLKDPLYK---SFIDEKNEMGNTPLHILATLSARTC  347 (525)
Q Consensus       302 ~A~~~~~~~~~~~ll~~~~~~---~~in~~d~~G~T~Lh~A~~~~~~~~  347 (525)
                      +|+.+|+..++..|++.....   .+....+-.|.|+-.+|..+|...+
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gi  695 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGI  695 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccch
Confidence            666666666666666544333   2333344456666666666554443

>smart00248 ANK ankyrin repeats

Probab=96.31  E-value=0.0068  Score=34.24  Aligned_cols=26  Identities=42%  Similarity=0.727  Sum_probs=14.4

Q ss_pred             CChHhHHHHHcCCHHHHHHHHhcCCC
Q 009805          126 ENTALHEAVQCGNLDAVKILMEAGPN  151 (525)
Q Consensus       126 g~t~Lh~A~~~g~~~~v~~Ll~~~~~  151 (525)
                      |.||+|+|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            44555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.30  E-value=0.0078  Score=33.97  Aligned_cols=27  Identities=37%  Similarity=0.577  Sum_probs=18.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhcCCC
Q 009805          160 GETPLYMAAARGSKKMVAEILEKCSSA  186 (525)
Q Consensus       160 g~tpL~~A~~~g~~~~v~~Ll~~~~~~  186 (525)
                      |.||+|+|+..++.++++.|++++.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            567777777777777777777766544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.12  E-value=0.069  Score=45.39  Aligned_cols=138  Identities=17%  Similarity=0.098  Sum_probs=77.5

Q ss_pred             ChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCH
Q 009805          127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAA  206 (525)
Q Consensus       127 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~  206 (525)
                      ...|..|+..+...+++..-+...+.    -...++.+-.||+..+.|+|+|+-+.-.-     .+-.+.+..|+...+.
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i-----~~~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHI-----YNPEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCC-----CCchhhhhhhhhccch
Confidence            45677899999999988877643321    13467788889999999999999543221     2334567788888777


Q ss_pred             HHHH----HHHHhcCcCcccCCC--CCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHH
Q 009805          207 DVVE----KLLAKKRHLTRERDD--CGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGT  280 (525)
Q Consensus       207 ~~~~----~Ll~~~~~~~~~~d~--~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  280 (525)
                      ++..    .++++.... ...|.  --..-|..|+..|....+...+++|.+.        ..+.|..|+.+++..++.+
T Consensus       118 sLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~--------~~~vls~Av~ynhRkIL~y  188 (192)
T PF03158_consen  118 SLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNV--------DIIVLSQAVKYNHRKILDY  188 (192)
T ss_pred             hHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcc--------cHHHHHHHHHhhHHHHHHH
Confidence            7632    122221110 00000  0001244555555555555555555543        1245555555555555555


Q ss_pred             HH
Q 009805          281 II  282 (525)
Q Consensus       281 Ll  282 (525)
                      ++
T Consensus       189 fi  190 (192)
T PF03158_consen  189 FI  190 (192)
T ss_pred             hh
Confidence            54

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.82  E-value=0.064  Score=46.96  Aligned_cols=90  Identities=12%  Similarity=0.087  Sum_probs=53.9

Q ss_pred             ChHhHHHHHcCCHHHHHHHHhcCC----CCCCCCCCCCchHHHHHH--HcCCHHHHHHHHHhc-CCCCC---CCCCCCcH
Q 009805          127 NTALHEAVQCGNLDAVKILMEAGP----NFPYSANVNGETPLYMAA--ARGSKKMVAEILEKC-SSAAH---DGPNGKTA  196 (525)
Q Consensus       127 ~t~Lh~A~~~g~~~~v~~Ll~~~~----~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~~-~~~~~---~~~~g~t~  196 (525)
                      .++|.+++..+..+++-+|+.+-.    ++....  .+.--+-++.  -..+..++++.+++| +++|.   +-..|.|.
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~--~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASME--KELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhcC--cchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            478888888888889988887521    111000  1111222222  233566777777777 55554   34457777


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCc
Q 009805          197 LHAAVNSYAADVVEKLLAKKRH  218 (525)
Q Consensus       197 L~~A~~~~~~~~~~~Ll~~~~~  218 (525)
                      |.-|++.++.+++..|+++|+.
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCcc
Confidence            7777777777777777777653

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.76  E-value=0.014  Score=56.77  Aligned_cols=40  Identities=30%  Similarity=0.353  Sum_probs=20.0

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHH
Q 009805          161 ETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAA  200 (525)
Q Consensus       161 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  200 (525)
                      .|+||+|+..|..++|.+||+.|+|+...|..|.||...+
T Consensus       431 sT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls  470 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLS  470 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccc
Confidence            3455555555555555555555555545555555554443

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.51  E-value=0.13  Score=43.73  Aligned_cols=44  Identities=23%  Similarity=0.187  Sum_probs=25.5

Q ss_pred             hHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHH
Q 009805          130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEIL  180 (525)
Q Consensus       130 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  180 (525)
                      |..|+..|-...+...+++|.+++       .+.|..|+..++..++.+++
T Consensus       147 l~~a~~kgll~F~letlkygg~~~-------~~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVD-------IIVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccc-------HHHHHHHHHhhHHHHHHHhh
Confidence            455666666666666666655533       25666666666666655554

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.28  E-value=0.059  Score=52.68  Aligned_cols=62  Identities=24%  Similarity=0.225  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhcCCCCC------CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHH
Q 009805          173 KKMVAEILEKCSSAAH------DGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSA  235 (525)
Q Consensus       173 ~~~v~~Ll~~~~~~~~------~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~  235 (525)
                      .+.+++|.+++.+.|.      .+.---|+||+|+.+|..+++.++|+.+.| +...|..|.||...+.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence            4455555555544332      122234555555555555555555555544 4555555555554443

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.03  E-value=0.32  Score=42.77  Aligned_cols=97  Identities=10%  Similarity=0.095  Sum_probs=45.3

Q ss_pred             CchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHc--CChhHHHHHHHhhhcCChhHhhhh
Q 009805           35 HTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKC--GRPAVVKVLIEFAKKQPTAMKCCA  112 (525)
Q Consensus        35 ~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~  112 (525)
                      .+++.+|+.+       +..+++.+|+...+-...++..... +.--+.++...  .+..+++++|++|-..++.     
T Consensus       180 ~~Am~~si~~-------~K~dva~~lls~f~ft~~dv~~~~~-~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~-----  246 (284)
T PF06128_consen  180 HQAMWLSIGN-------AKEDVALYLLSKFNFTKQDVASMEK-ELYDIEYLLSEHSASYKVLEYFINRGLVDVNK-----  246 (284)
T ss_pred             HHHHHHHhcc-------cHHHHHHHHHhhcceecchhhhcCc-chhhHHHHHhhcCCcHHHHHHHHhccccccch-----
Confidence            4566666666       6777777775543332222211111 11122333322  2344555555555322111     


Q ss_pred             hhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCC
Q 009805          113 KTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGP  150 (525)
Q Consensus       113 ~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  150 (525)
                            --.+-..|.|-|.-|++.++.+++..||++|+
T Consensus       247 ------~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  247 ------KFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             ------hhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence                  01133456666666666666666666666655

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=91.12  E-value=5.6  Score=38.44  Aligned_cols=264  Identities=13%  Similarity=0.113  Sum_probs=116.0

Q ss_pred             ccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHh
Q 009805           30 THNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMK  109 (525)
Q Consensus        30 ~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~  109 (525)
                      .|..|.-.|..+.+.       +..+....+.+.+.. ...--..|..|.-.+......+..+....+++.-...-.   
T Consensus        17 ~~~~gsr~lQ~~l~~-------~~~~~~~~i~~~l~~-~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~---   85 (322)
T cd07920          17 KDQHGSRFLQQKLEE-------ATPEEKELIFDEILP-HVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVV---   85 (322)
T ss_pred             CCchhhHHHHHHhcc-------CCHHHHHHHHHHHHH-hHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHH---
Confidence            333555566666555       555555554443221 111223455566666666666555544444433211000   


Q ss_pred             hhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCC--
Q 009805          110 CCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEA--GPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSS--  185 (525)
Q Consensus       110 ~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~--  185 (525)
                               --..+..|.-.+..+...+..+-...+++.  +.-.....|..|...+..+...+..+..+.+++.-..  
T Consensus        86 ---------~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~  156 (322)
T cd07920          86 ---------RLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNC  156 (322)
T ss_pred             ---------HHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence                     002344444444444444443222222221  1001112344455555555444444433333322100  


Q ss_pred             -CCCCCCCCCcHHHHHHHcCCHH----HHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChh----HHHHHhhcCCCcchh
Q 009805          186 -AAHDGPNGKTALHAAVNSYAAD----VVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKD----ITALLLEFDGSSALI  256 (525)
Q Consensus       186 -~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~----~v~~Ll~~~~~~~~~  256 (525)
                       .-..+..|...+...+.....+    +++.+...-..  -..|..|...+..+...+..+    +++.+.++-  ....
T Consensus       157 ~~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~--L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~--~~l~  232 (322)
T cd07920         157 VALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHALE--LVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNI--VQLS  232 (322)
T ss_pred             HHHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHH--HhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHH--HHHH
Confidence             0013445555555555544332    22233222211  234555666666666655433    233332211  1112


Q ss_pred             cccCCCCcHHHHHHhcCC----HHHHHHHHhhCC---Cc-cccccCCCCchhHHHHhcCCHHHHHHHhhC
Q 009805          257 LDKDRKMTALLMAASQGH----ESLAGTIIAHYP---EC-YDLVDNGGWNVLHFLMVSLHESKLKRLLKD  318 (525)
Q Consensus       257 ~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~---~~-~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~  318 (525)
                      .++ .|...+..+...+.    ..+++.++....   .. .-..|..|+..+..+.........+.++..
T Consensus       233 ~~k-~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~~~  301 (322)
T cd07920         233 CHK-FASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLVEA  301 (322)
T ss_pred             cCc-chHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHHHHHHHH
Confidence            222 56566665555554    345555554431   11 123577888888888888776555555543

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=90.37  E-value=5  Score=38.79  Aligned_cols=256  Identities=9%  Similarity=0.103  Sum_probs=158.8

Q ss_pred             cCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhc--CCC
Q 009805           74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEA--GPN  151 (525)
Q Consensus        74 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~--~~~  151 (525)
                      .|..|.-.|..+...+..+....+++.-...-.            --+.|..|+..+......+..+-...+++.  |.-
T Consensus        17 ~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~------------~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~   84 (322)
T cd07920          17 KDQHGSRFLQQKLEEATPEEKELIFDEILPHVV------------ELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHV   84 (322)
T ss_pred             CCchhhHHHHHHhccCCHHHHHHHHHHHHHhHH------------HHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            556677778888888888877777776332111            124577888888888888876644444443  222


Q ss_pred             CCCCCCCCCchHHHHHHHcCCHHHHHHHHHhc-CC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcC--cCcccCCCC
Q 009805          152 FPYSANVNGETPLYMAAARGSKKMVAEILEKC-SS--AAHDGPNGKTALHAAVNSYAADVVEKLLAKKR--HLTRERDDC  226 (525)
Q Consensus       152 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~--~~~~~~d~~  226 (525)
                      .....+..|.-.+..+...+..+....+++.- .+  .-..|..|...+..+......+..+.+++.-.  -..-..+..
T Consensus        85 ~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~  164 (322)
T cd07920          85 VRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPY  164 (322)
T ss_pred             HHHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCcc
Confidence            22356778888888888877766555555432 11  12367889999999988877766555554311  111235667


Q ss_pred             CCcHHHHHHHcCChh----HHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHH----HHHHHHhhCCCccccccCCCCc
Q 009805          227 GWTPLHHSAYLGLKD----ITALLLEFDGSSALILDKDRKMTALLMAASQGHES----LAGTIIAHYPECYDLVDNGGWN  298 (525)
Q Consensus       227 g~tpL~~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~----~v~~Ll~~~~~~~~~~d~~g~t  298 (525)
                      |...+.........+    +++.+..+-.   ....+..|...+..+...+..+    +++.+..+...  -..++.|..
T Consensus       165 G~~vvq~~l~~~~~~~~~~l~~~l~~~~~---~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~--l~~~k~Gs~  239 (322)
T cd07920         165 GCRVIQRCLEHCSEEQREPLLEEILEHAL---ELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQ--LSCHKFASN  239 (322)
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHHHHHHHH---HHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHH--HHcCcchHH
Confidence            888887777765543    4444443211   2222337888888888887655    44444443333  236788999


Q ss_pred             hhHHHHhcCCHHHHHHHhhCccccc------cccccCCCCChHHHHHHhcCchh
Q 009805          299 VLHFLMVSLHESKLKRLLKDPLYKS------FIDEKNEMGNTPLHILATLSART  346 (525)
Q Consensus       299 ~Lh~A~~~~~~~~~~~ll~~~~~~~------~in~~d~~G~T~Lh~A~~~~~~~  346 (525)
                      .+..+......+..+.+++......      .-=..|..|+-.+..+.......
T Consensus       240 Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~  293 (322)
T cd07920         240 VVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEE  293 (322)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHH
Confidence            9999998887554444444332211      12357899999999888876543

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.05  E-value=0.61  Score=34.07  Aligned_cols=47  Identities=17%  Similarity=0.262  Sum_probs=35.8

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHh
Q 009805          128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK  182 (525)
Q Consensus       128 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  182 (525)
                      ..+..|+..|+.|+++.+++.+..        ....+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~--------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP--------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc--------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            567888888888888888865411        14568888888888888888876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.67  E-value=0.68  Score=33.85  Aligned_cols=48  Identities=21%  Similarity=0.285  Sum_probs=40.5

Q ss_pred             CcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhc
Q 009805           79 DSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEA  148 (525)
Q Consensus        79 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  148 (525)
                      ...+..|+..|+.|+++.+++.+..                      ....+..|+...+.+++++|+++
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~----------------------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP----------------------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc----------------------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            3467899999999999999976532                      14679999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569

Probab=84.06  E-value=5.6  Score=33.67  Aligned_cols=33  Identities=33%  Similarity=0.471  Sum_probs=28.0

Q ss_pred             cccccCCccchhhHhhhHHHHHHHHHHHHHHHH
Q 009805          463 SAIFAKNAAFQAFIISDAIAMVLSLFAAFVHFI  495 (525)
Q Consensus       463 ~~~~~~~~~f~~F~~~~~~a~~~S~~~~~~~~~  495 (525)
                      ++...+.++|+.|++.|.++...|+.+++..+.
T Consensus        35 ~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~   67 (154)
T TIGR01569        35 KAKFSDLPAFVYFVVANAIACGYSLLSLVVSIF   67 (154)
T ss_pred             eeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777899999999999999999998877544

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	525
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-15
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-12
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-12
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-11
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		9e-11
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-10
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		9e-10
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-09
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-08
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		7e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		9e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-07
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-07
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		3e-07
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		3e-07
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		3e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		3e-07
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		3e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		9e-06
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-07
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		3e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		3e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		7e-06
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		9e-06
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		9e-06
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-05
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		1e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-05
1uoh_A	226	Human Gankyrin Length = 226		5e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		7e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		9e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-04
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		8e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		8e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 128/298 (42%), Gaps = 56/298 (18%)
Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
           +N K ++PLH AA+ G   V K L++         K  AK          +++ T LH A
Sbjct: 43  SNVKVETPLHMAARAGHTEVAKYLLQ------NKAKVNAKA---------KDDQTPLHCA 87
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA------- 186
            + G+ + VK+L+E   N P  A   G TPL++AA  G  + V  +LEK +S        
Sbjct: 88  ARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 187 -----------------------AHD---GPNGKTALHAAVNSYAADVVEKLLAKKRHLT 220
                                  AH    G NG T LH AV+    D+V KLL  +    
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV-KLLLPRGGSP 205
Query: 221 RERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGT 280
                 G+TPLH +A     ++   LL++ GS+    +  + +T L +AA +GH  +   
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN--AESVQGVTPLHLAAQEGHAEMVAL 263
Query: 281 IIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           +++      +L +  G   LH +    H      L+K   +   +D    MG TPLH+
Sbjct: 264 LLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIK---HGVMVDATTRMGYTPLHV 317

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP 191
           EA + GN D VK L+E G + P +++ +G TPL+ AA  G K++V  +L K +       
Sbjct: 10  EAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG 251
           +G+T LH A  +   ++V KLL  K      +D  G TPLH++A  G K+I  LLL   G
Sbjct: 69  DGRTPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK-G 126
Query: 252 SSALILDKDRKMTALLMAASQGHESL 277
           +     D D + T L +A   G+E +
Sbjct: 127 ADPNTSDSDGR-TPLDLAREHGNEEI 151

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP 191
           EA + GN D VK L+E G +   S + +G TPL+ AA  G K++V  ++ K +       
Sbjct: 10  EAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG 251
           +G+T LH A  +   +VV KLL  K      +D  G TPLHH+A  G K++  LL+   G
Sbjct: 69  DGRTPLHHAAENGHKEVV-KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-G 126
Query: 252 SSALILDKDRKMTALLMAASQGHESL 277
           +     D D + T L +A   G+E +
Sbjct: 127 ADVNTSDSDGR-TPLDLAREHGNEEV 151

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 4/148 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + GN D VK L+E G +   S + +G TPL+ AA  G K++V  ++ K +     
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
             +G+T LH A      ++V KLL  K      +D  G TPLH++A  G K+I  LL+  
Sbjct: 67  DSDGRTPLHYAAKEGHKEIV-KLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Query: 250 DGSSALILDKDRKMTALLMAASQGHESL 277
            G+     D D + T L +A   G+E +
Sbjct: 126 -GADVNTSDSDGR-TPLDLAREHGNEEI 151

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
           T LH A + G+L+ VK+L+EAG +   + + NG TPL++AA  G  ++V  +LE  +   
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 188 HDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL 247
               NG+T LH A  +   +VV KLL +       +D  G TPLH +A  G  ++  LLL
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 248 E 248
           E
Sbjct: 122 E 122

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP 191
           EA + GN D VK L+E G +   +++ +G+TPL++AA  G K++V  +L + +       
Sbjct: 10  EAAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS 68
Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG 251
           +GKT LH A  +   +VV KLL  +      +D  G TPLH +A  G K++  LLL   G
Sbjct: 69  DGKTPLHLAAENGHKEVV-KLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL-SQG 126
Query: 252 SSALILDKDRKMTALLMAASQGHESL 277
           +     D D + T L +A   G+E +
Sbjct: 127 ADPNTSDSDGR-TPLDLAREHGNEEV 151

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA   G  D V+ILM  G +   + + NG TPL++AAA G  ++V  +L+  +     
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDD-NGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL-- 247
              G T LH A      ++VE LL K        D  GWTPLH +A  G  +I  +LL  
Sbjct: 69  DSAGITPLHLAAYDGHLEIVEVLL-KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
Query: 248 --EFDGSSALILDKDRKMTALLMAASQGHESLA 278
             + +   AL       +TA  ++ +QG E LA
Sbjct: 128 GADVNAQDAL------GLTAFDISINQGQEDLA 154

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +   S +V G TPL++AA  G  ++V  +L+  +    D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNASDHV-GWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
              G T LH A +    +VVE LL K        D  G+TPLH +A +G  +I  +LL+ 
Sbjct: 77  DSLGVTPLHLAADRGHLEVVEVLL-KNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
            G+     DK  K TA  ++   G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISIDNGNEDLA 162

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 79/149 (53%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +   +A+V G TPL++AA  G  ++V  +L+  +     
Sbjct: 18  LLEAARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
              G T LH A +    ++VE LL K       +DD G TPLH +A  G  +I  +LL++
Sbjct: 77  DTLGSTPLHLAAHFGHLEIVEVLL-KNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
            G+     DK  K TA  ++ + G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISINNGNEDLA 162

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 6/150 (4%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +   + +  G TPL++AA  G  ++V E+L K  +  + 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHLEIV-EVLLKYGADVNA 75
Query: 190 GPN-GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
             N G T LH A ++   ++VE LL K       +D  G+TPLH +AY G  +I  +LL+
Sbjct: 76  WDNYGATPLHLAADNGHLEIVEVLL-KHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Query: 249 FDGSSALILDKDRKMTALLMAASQGHESLA 278
           + G+     DK  K TA  ++   G+E LA
Sbjct: 135 Y-GADVNAQDKFGK-TAFDISIDNGNEDLA 162

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +   + + +G TPL++AA  G  ++V  +L+  +     
Sbjct: 6   LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
             +G T LH A      ++VE LL K       +D  G+TPLH +A  G  +I  +LL+ 
Sbjct: 65  DKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
            G+     DK  K T   +A  +GHE +A
Sbjct: 124 -GADVNAQDKFGK-TPFDLAIREGHEDIA 150

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +   + +  G TPL+MAAA G  ++V  +L   +     
Sbjct: 6   LLEAARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
             NG T LH A +    ++VE LL K       +D  G TPL+ +AY G  +I  +LL+ 
Sbjct: 65  DTNGTTPLHLAASLGHLEIVEVLL-KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
            G+     DK  K TA  ++   G+E LA
Sbjct: 124 -GADVNAQDKFGK-TAFDISIDIGNEDLA 150

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
           T+  G SPLH AA  GR  ++ +L++                    G  N ++   LH A
Sbjct: 82  TSQDGSSPLHVAALHGRADLIPLLLKHGANA---------------GARNADQAVPLHLA 126
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
            Q G+   VK L+++    P   +++G TPL  A + G  ++VA +L+  +S       G
Sbjct: 127 CQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKG 185
Query: 194 KTALHAAVNSYAADVVEKLL 213
            TALH AV      VVE LL
Sbjct: 186 NTALHEAVIEKHVFVVELLL 205

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +   + + +G TPL++AA  G  ++V  +L+  +     
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
             +G T LH A      ++VE LL K       +D  G+TPLH +A  G  +I  +LL+ 
Sbjct: 77  DKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
            G+     DK  K TA  ++   G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISIDNGNEDLA 162

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 26/141 (18%)
Query: 77  KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC 136
           +G +PLH AA  G P +V+VL+    K    +       W           T LH A   
Sbjct: 46  QGSTPLHLAAWIGHPEIVEVLL----KHGADVNARDTDGW-----------TPLHLAADN 90
Query: 137 GNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCSSAAHDGP 191
           G+L+ V++L++      Y A+VN     G TPL++AA RG  ++V  +L+  +       
Sbjct: 91  GHLEIVEVLLK------YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDK 144
Query: 192 NGKTALHAAVNSYAADVVEKL 212
            GKTA   ++++   D+ E L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +   + +  G TPL++AA  G  ++V  +L+  +     
Sbjct: 18  LLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
             +G T LH A ++   ++VE LL K       +D  G TPLH +A  G  +I  +LL+ 
Sbjct: 77  DTDGWTPLHLAADNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
            G+     DK  K TA  ++   G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISIDNGNEDLA 162

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +   + +  G+TPL++AA  G  ++V  +L+  +     
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
             +G T LH A      ++VE LL     +  + D  G TPLH +A  G  +I  +LL++
Sbjct: 77  DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD-DTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
            G+     DK  K TA  ++   G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISIDNGNEDLA 162

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +   + + +G TPL++AA  G  ++V  +L+  +     
Sbjct: 6   LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
             +G T LH A      ++VE LL K       +D  G+TPLH +A  G  +I  +LL+ 
Sbjct: 65  DKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
            G+     DK  K T   +A   G+E +A
Sbjct: 124 -GADVNAQDKFGK-TPFDLAIDNGNEDIA 150

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 21/204 (10%)
Query: 60  VEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQML 119
           V+++L   PSLL+Q +  G  PLH +            + F   + T+          + 
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWS------------VSFQAHEITSFLLSKMENVNLD 65
Query: 120 GLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKK 174
              ++   T  H A   GNL+ VK L +     P   ++N     G T L++A  +   +
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDR----PLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 175 MVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS 234
           +   ++E  +S        +  LH A +  +  ++E L    +     +D  GWTPL H+
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 235 AYLGLKDITALLLEFDGSSALILD 258
              G  D   LL+E  G+   ++D
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVD 205

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 40/208 (19%)
Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK---- 182
           N  LH+A        V+ L+ + P+     + +G  PL+ + +  + ++ + +L K    
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 183 -----------------CS-------SAAHDGP----------NGKTALHAAVNSYAADV 208
                            CS        + +D P           G T LH AV     + 
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE- 121
Query: 209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLM 268
           V + L +     R +D     PLH +A +G   +  LL    G SA+     +  T L  
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL-GKSAVNWQDKQGWTPLFH 180
Query: 269 AASQGHESLAGTIIAHYPECYDLVDNGG 296
           A ++GH   A  ++  Y   YDLVDN G
Sbjct: 181 ALAEGHGDAAVLLVEKYGAEYDLVDNKG 208

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 21/204 (10%)
Query: 60  VEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQML 119
           V+++L   PSLL+Q +  G  PLH +            + F   + T+          + 
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWS------------VSFQAHEITSFLLSKMENVNLD 65
Query: 120 GLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKK 174
              ++   T  H A   GNL+ VK L +     P   ++N     G T L++A  +   +
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDR----PLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 175 MVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS 234
           +   ++E  +S        +  LH A +  +  ++E L    +     +D  GWTPL H+
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 235 AYLGLKDITALLLEFDGSSALILD 258
              G  D   LL+E  G+   ++D
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVD 205

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 40/208 (19%)
Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK---- 182
           N  LH+A        V+ L+ + P+     + +G  PL+ + +  + ++ + +L K    
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 183 -----------------CS-------SAAHDGP----------NGKTALHAAVNSYAADV 208
                            CS        + +D P           G T LH AV     + 
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE- 121
Query: 209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLM 268
           V + L +     R +D     PLH +A +G   +  LL    G SA+     +  T L  
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL-GKSAVNWQDKQGWTPLFH 180
Query: 269 AASQGHESLAGTIIAHYPECYDLVDNGG 296
           A ++GH   A  ++  Y   YDLVDN G
Sbjct: 181 ALAEGHGDAAVLLVEKYGAEYDLVDNKG 208

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 21/204 (10%)
Query: 60  VEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQML 119
           V+++L   PSLL+Q +  G  PLH +            + F   + T+          + 
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWS------------VSFQAHEITSFLLSKMENVNLD 65
Query: 120 GLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKK 174
              ++   T  H A   GNL+ VK L +     P   ++N     G T L++A  +   +
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDR----PLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 175 MVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS 234
           +   ++E  +S        +  LH A +  +  ++E L    +     +D  GWTPL H+
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 235 AYLGLKDITALLLEFDGSSALILD 258
              G  D   LL+E  G+   ++D
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVD 205

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 40/208 (19%)
Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK---- 182
           N  LH+A        V+ L+ + P+     + +G  PL+ + +  + ++ + +L K    
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 183 -----------------CS-------SAAHDGP----------NGKTALHAAVNSYAADV 208
                            CS        + +D P           G T LH AV     + 
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE- 121
Query: 209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLM 268
           V + L +     R +D     PLH +A +G   +  LL    G SA+     +  T L  
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL-GKSAVNWQDKQGWTPLFH 180
Query: 269 AASQGHESLAGTIIAHYPECYDLVDNGG 296
           A ++GH   A  ++  Y   YDLVDN G
Sbjct: 181 ALAEGHGDAAVLLVEKYGAEYDLVDNKG 208

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
           T LH A + G+L+ VK+L+EAG +   + + NG TPL++AA  G  ++V  +LE  +   
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 188 HDGPNGKTALHAAVNSYAADVVEKLL 213
               NG+T LH A  +   +VV+ LL
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 159 NGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH 218
           NG TPL++AA  G  ++V  +LE  +       NG+T LH A  +   +VV KLL +   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV-KLLLEAGA 59
Query: 219 LTRERDDCGWTPLHHSAYLGLKDITALLLE 248
               +D  G TPLH +A  G  ++  LLLE
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +   + N  G TPL++AA  G  ++V  +L+  +     
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAADNT-GTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
              G T LH A      ++VE LL K        D  G TPLH +A  G  +I  +LL+ 
Sbjct: 77  DVFGYTPLHLAAYWGHLEIVEVLL-KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
            G+     DK  K TA  ++   G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISIDNGNEDLA 162

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +   + +  G TPL++AA  G  ++V  +L+  +     
Sbjct: 18  LLEAARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
              G T LH A      ++VE LL K        D  G+TPLH +A  G  +I  +LL+ 
Sbjct: 77  DSLGVTPLHLAARRGHLEIVEVLL-KNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK- 134
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
           +G+     DK  K TA  ++   G+E LA
Sbjct: 135 NGADVNAQDKFGK-TAFDISIDNGNEDLA 162

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 11/218 (5%)
Query: 121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEIL 180
           + ++ + + LH A + G++D   +L++AG N   + + +  TPL  AA     + V  ++
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 181 EKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
           +  +        G T LH A      +VV+ LL+  +     +DD GWTP+  +      
Sbjct: 65  KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 241 DITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDL--VDNGGWN 298
           D+  LLL   GS   I D +  +  L  AA  G   +A  ++A   +C DL  V+  G +
Sbjct: 125 DLVKLLLS-KGSDINIRDNEENI-CLHWAAFSGCVDIAEILLA--AKC-DLHAVNIHGDS 179
Query: 299 VLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPL 336
            LH   ++  E++   ++      S +  KN+ G TPL
Sbjct: 180 PLH---IAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +   + + +G TPL++AA  G  ++V  +L+  +     
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
              G T LH A      ++VE LL K        D  G TPLH +A +G  +I  +LL+ 
Sbjct: 77  DIXGSTPLHLAALIGHLEIVEVLL-KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
            G+     DK  K TA  ++   G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISIDNGNEDLA 162

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 41/179 (22%)
Query: 50  KEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMK 109
           +EG +V+ +     L+   + L Q +  G SPLH A + GR AVV++LI    +      
Sbjct: 9   REGNAVAVRL---WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR------ 59
Query: 110 CCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPL 164
                    + + N  ++T LH A   G+ D V+ L++      Y A++N     G  PL
Sbjct: 60  ---------INVMNRGDDTPLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNVPL 104
Query: 165 YMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRER 223
           + A   G  ++  +++           NG  AL +  N Y    V+K  A  R L RER
Sbjct: 105 HYACFWGQDQVAEDLV----------ANG--ALVSICNKYGEMPVDKAKAPLRELLRER 151

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 41/179 (22%)
Query: 50  KEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMK 109
           +EG +V+ +     L+   + L Q +  G SPLH A + GR AVV++LI    +      
Sbjct: 14  REGNAVAVRL---WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR------ 64
Query: 110 CCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPL 164
                    + + N  ++T LH A   G+ D V+ L++      Y A++N     G  PL
Sbjct: 65  ---------INVMNRGDDTPLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNVPL 109
Query: 165 YMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRER 223
           + A   G  ++  +++           NG  AL +  N Y    V+K  A  R L RER
Sbjct: 110 HYACFWGQDQVAEDLV----------ANG--ALVSICNKYGEMPVDKAKAPLRELLRER 156

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 16/139 (11%)
Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
           T+A G +PLH AA  G   +V+VL++               A  ++G      +T LH A
Sbjct: 43  TDASGLTPLHLAATYGHLEIVEVLLKHGADV---------NAIDIMG------STPLHLA 87
Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
              G+L+ V++L++ G +   + +  G+TPL++AA  G  ++V  +L+  +        G
Sbjct: 88  ALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 194 KTALHAAVNSYAADVVEKL 212
           KTA   ++++   D+ E L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVN---GETPLYMAAARGSKKMVAEILEKCSSA 186
           L EA + G  D V+ILM  G +     N N   G TPL++    G  +++  +L+  +  
Sbjct: 18  LLEAARAGQDDEVRILMANGAD----VNANDWFGITPLHLVVNNGHLEIIEVLLKYAADV 73
Query: 187 AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
                +G T LH A      ++VE LL K        D  G+TPLH +A  G  +I  +L
Sbjct: 74  NASDKSGWTPLHLAAYRGHLEIVEVLL-KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 247 LEFDGSSALILDKDRKMTALLMAASQGHESLA 278
           L++ G+     DK  K TA  ++   G+E LA
Sbjct: 133 LKY-GADVNAQDKFGK-TAFDISIDNGNEDLA 162

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 19/230 (8%)
Query: 125 EENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCS 184
           E+N  L +AVQ  ++D V+ L+E G N  +     G TPL+ A     + +V  +L   +
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 185 SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITA 244
                  NG T    A  + +  +++  L+K   +  E D  G+T    +A  G   + A
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYG--KVKA 120
Query: 245 LLLEFDGSSALILDKDRK----------MTALLMAASQGHESLAGTIIAHYPECYDLVDN 294
           L   +   + + L +  K           TAL+ AA +GH  +   ++       +  DN
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180
Query: 295 GGWNVLHFLMVSLHESKLK---RLLKDPLYKSFIDEKNEMGNTPLHILAT 341
            G N L   ++S  +S ++    LL D  + + ++ + E G TPL ILA 
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLD--HGADVNVRGERGKTPL-ILAV 227

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 4/149 (2%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+IL+  G +     N  G TPL++AA  G  ++V  +L+  +     
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNT-GLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
              G T LH A  +   ++VE LL K        D  G TPLH +A  G  +I  +LL++
Sbjct: 77  DVYGFTPLHLAAMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
            G+     DK  K TA  ++   G+E LA
Sbjct: 136 -GADVNAQDKFGK-TAFDISIDNGNEDLA 162

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 19/230 (8%)
Query: 125 EENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCS 184
           E+N  L +AVQ  ++D V+ L+E G N  +     G TPL+ A     + +V  +L   +
Sbjct: 24  EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 185 SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITA 244
                  NG T    A  + +  +++  L+K   +  E D  G+T    +A  G   + A
Sbjct: 84  DPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYG--KVKA 140
Query: 245 LLLEFDGSSALILDKDRK----------MTALLMAASQGHESLAGTIIAHYPECYDLVDN 294
           L   +   + + L +  K           TAL+ AA +GH  +   ++       +  DN
Sbjct: 141 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 200
Query: 295 GGWNVLHFLMVSLHESKLK---RLLKDPLYKSFIDEKNEMGNTPLHILAT 341
            G N L   ++S  +S ++    LL D  + + ++ + E G TPL ILA 
Sbjct: 201 MGRNALIHALLSSDDSDVEAITHLLLD--HGADVNVRGERGKTPL-ILAV 247

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 27/197 (13%)
Query: 73  QTNAKGDSPLHAAAKCGR-PAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
           + +  GD+PLH A   G  PAV +++  F            +   + L + N    T LH
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLF------------QQGGRELDIYNNLRQTPLH 51
Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD-- 189
            AV       V++L+ AG + P + + +G+T  ++A    S   +  +L+  +    D  
Sbjct: 52  LAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE 110
Query: 190 --GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL 247
               +G TALH AVN+   + V+ LL +   +       G +PL H+       +  LLL
Sbjct: 111 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170
Query: 248 E---------FDGSSAL 255
           +         + GSSAL
Sbjct: 171 QHGANVNAQMYSGSSAL 187

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 19/166 (11%)
Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
           IL   S A     + +TALH A ++   ++VE LL     +  ++DD GW+PLH +A  G
Sbjct: 26  ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAG 84
Query: 239 LKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTII--AHYPECYDLVDNGG 296
             +I   LL   G+    ++++   T L  AAS+    +A  ++     P+  D      
Sbjct: 85  XDEIVKALL-VKGAHVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGGANPDAKD------ 136
Query: 297 WNVLHFLMVSLHESKLKRLLKDP----LYKSFIDEKNEMGNTPLHI 338
               H+   ++H +  K  LK       YK+  + ++  GNTPLH+
Sbjct: 137 ----HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 19/166 (11%)
Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
           IL   S A     + +TALH A ++   ++VE LL     +  ++DD GW+PLH +A  G
Sbjct: 26  ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAG 84
Query: 239 LKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTII--AHYPECYDLVDNGG 296
             +I   LL   G+    ++++   T L  AAS+    +A  ++     P+  D      
Sbjct: 85  RDEIVKALL-VKGAHVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGGANPDAKD------ 136
Query: 297 WNVLHFLMVSLHESKLKRLLKDP----LYKSFIDEKNEMGNTPLHI 338
               H+   ++H +  K  LK       YK+  + ++  GNTPLH+
Sbjct: 137 ----HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
           IL   S A     + +TALH A ++   ++VE LL     +  ++DD GW+PLH +A  G
Sbjct: 26  ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAG 84
Query: 239 LKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTII--AHYPECYDLVDNG 295
             +I   LL   G  A +   ++   T L  AAS+    +A  ++     P+  D     
Sbjct: 85  RDEIVKALL---GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD----- 136
Query: 296 GWNVLHFLMVSLHESKLKRLLKDP----LYKSFIDEKNEMGNTPLHI 338
                H+   ++H +  K  LK       YK+  + ++  GNTPLH+
Sbjct: 137 -----HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 178

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
           IL   S A     + +TALH A ++   ++VE LL     +  ++DD GW+PLH +A  G
Sbjct: 27  ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAG 85
Query: 239 LKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTII--AHYPECYDLVDNG 295
             +I   LL   G  A +   ++   T L  AAS+    +A  ++     P+  D     
Sbjct: 86  RDEIVKALL---GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD----- 137
Query: 296 GWNVLHFLMVSLHESKLKRLLKDP----LYKSFIDEKNEMGNTPLHI 338
                H+   ++H +  K  LK       YK+  + ++  GNTPLH+
Sbjct: 138 -----HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 179

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYM----------------------A 167
           LH A  CG LD  + L+  G +   + N  G+TPL +                      A
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168
Query: 168 AARGSKKMVAEILEKCSSAAH-----DGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRE 222
           A +  ++++     +  ++ H        +G TALH A      +V+ KLL + R+    
Sbjct: 169 ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL-KLLIQARYDVNI 227
Query: 223 RDDCGWTPLHHSAYLGLKDITALLLE 248
           +D  GWTPLH +A+ G ++   +L+E
Sbjct: 228 KDYDGWTPLHAAAHWGKEEACRILVE 253

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK 182
           +E+  T LH A Q G+L+ V++L++ G +     N  G TPL++AA RG  ++V  +L+ 
Sbjct: 44  DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF-GITPLHLAAIRGHLEIVEVLLKH 102
Query: 183 CSSAAHDGPNGKTALHAAVNSYAADVVEKL 212
            +        GKTA   ++++   D+ E L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 78  GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
           G +PLH AA  G   +V+VL++       A K                 +T LH A   G
Sbjct: 47  GKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG---------------DTPLHLAALYG 91
Query: 138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTAL 197
           +L+ V++L++ G +   + +  G TPL++AA  G  ++V  +L+  +        GKTA 
Sbjct: 92  HLEIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 198 HAAVNSYAADVVEKL 212
             ++++   D+ E L
Sbjct: 151 DISIDNGNEDLAEIL 165

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 28/144 (19%)
Query: 68  PSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAM---KCCAKTAW-------- 116
           PSL+   + +G S +H AA+ G  ++V  LI  AK Q   M          W        
Sbjct: 102 PSLI---DGEGCSCIHLAAQFGHTSIVAYLI--AKGQDVDMMDQNGMTPLMWAAYRTHSV 156
Query: 117 --QMLGLT---------NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLY 165
               L LT            +NTALH AV  GN   + +L+EAG N   + N+ GE+ L 
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD-AQNIKGESALD 215
Query: 166 MAAARGSKKMVAEILEKCSSAAHD 189
           +A  R +  M+  + E   +  +D
Sbjct: 216 LAKQRKNVWMINHLQEARQAKGYD 239

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 3/161 (1%)
Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK 182
           ++E  T LH A     +D VK  +  G            TPL+ A  +G   MV ++++ 
Sbjct: 39  DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 183 CSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK-D 241
            +  +     G + +H A       +V  L+AK + +    D  G TPL  +AY     D
Sbjct: 99  GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM-MDQNGMTPLMWAAYRTHSVD 157
Query: 242 ITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTII 282
            T LLL F+ S  L  DK  K TAL  A   G+ ++   ++
Sbjct: 158 PTRLLLTFNVSVNL-GDKYHKNTALHWAVLAGNTTVISLLL 197

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 67/149 (44%), Gaps = 37/149 (24%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +     +  G TPL++AA RG  ++V E+L K       
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIV-EVLLK------- 68
Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
                         + ADV              RD  G TPLH +A +G  +I  +LLE+
Sbjct: 69  --------------HGADV------------NARDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 250 DGSSALILDKDRKMTALLMAASQGHESLA 278
            G+     DK  K TA  ++   G+E LA
Sbjct: 103 -GADVNAQDKFGK-TAFDISIDNGNEDLA 129

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE 181
           T+ +  T LH A   G+L+ V++L++ G +   S ++ G TPL++AAA G  ++V  +L+
Sbjct: 43  TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS-DLTGITPLHLAAATGHLEIVEVLLK 101
Query: 182 KCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKD 241
             +       +G T LH A      ++VE LL K       +D  G T    S   G +D
Sbjct: 102 HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 242 ITALL 246
           +  +L
Sbjct: 161 LAEIL 165

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +   + + NG TPL++AA  G  ++V  +LE  +     
Sbjct: 28  LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 190 GPNGKTALHAAVNSYAADVVEKL 212
              GKTA   ++++   D+ E L
Sbjct: 87  DKFGKTAFDISIDNGNEDLAEIL 109

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +   + + NG TPL++AA  G  ++V  +LE  +     
Sbjct: 10  LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 190 GPNGKTALHAAVNSYAADVVEKL 212
              GKTA   ++++   D+ E L
Sbjct: 69  DKFGKTAFDISIDNGNEDLAEIL 91

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 63/151 (41%), Gaps = 10/151 (6%)
Query: 119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAE 178
           +G  N E +  L EA + G+++ VK L                TPL+ AA      +V  
Sbjct: 3   MGSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 62
Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
           +L+  +        G   LH A  SY    V +LL K   +    D   +TPLH +A  G
Sbjct: 63  LLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 121
Query: 239 LKDITALLLEF---------DGSSALILDKD 260
             +I  LLL+          DG++ L L KD
Sbjct: 122 KYEICKLLLQHGADPTKKNRDGNTPLDLVKD 152

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 63/151 (41%), Gaps = 10/151 (6%)
Query: 119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAE 178
           + L N E +  L EA + G+++ VK L                TPL+ AA      +V  
Sbjct: 5   ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
           +L+  +        G   LH A  SY    V +LL K   +    D   +TPLH +A  G
Sbjct: 65  LLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 123
Query: 239 LKDITALLLEF---------DGSSALILDKD 260
             +I  LLL+          DG++ L L KD
Sbjct: 124 KYEICKLLLQHGADPTKKNRDGNTPLDLVKD 154

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           L EA + G  D V+ILM  G +     +  G TPL++AA RG  ++V  +L+  +     
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 190 GPNGKTALHAAVNSYAADVVEKLL 213
              G+T LH A      ++VE LL
Sbjct: 77  DSWGRTPLHLAATVGHLEIVEVLL 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	525
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-32
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-31
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-31
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-31
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-29
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-28
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-30
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-30
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-29
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-27
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-23
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-29
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-28
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-27
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-28
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-27
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-27
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-13
2rfa_A	232	Transient receptor potential cation channel subfa	6e-26
2rfa_A	232	Transient receptor potential cation channel subfa	2e-20
2rfa_A	232	Transient receptor potential cation channel subfa	4e-18
2rfa_A	232	Transient receptor potential cation channel subfa	1e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-26
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-25
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-24
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-23
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-19
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-23
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-24
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-24
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-12
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-23
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-21
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-21
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-23
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-05
2etb_A	256	Transient receptor potential cation channel subfam	3e-23
2etb_A	256	Transient receptor potential cation channel subfam	5e-21
2etb_A	256	Transient receptor potential cation channel subfam	1e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-22
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-22
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-13
2pnn_A	273	Transient receptor potential cation channel subfa	8e-22
2pnn_A	273	Transient receptor potential cation channel subfa	4e-21
2pnn_A	273	Transient receptor potential cation channel subfa	8e-14
2pnn_A	273	Transient receptor potential cation channel subfa	6e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-21
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-21
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-21
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-20
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-05

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  134 bits (340), Expect = 1e-34
 Identities = 82/282 (29%), Positives = 120/282 (42%), Gaps = 31/282 (10%)

Query: 64  LEICPSLLIQ-------TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAW 116
           L I    L+Q       +N K ++PLH AA+ G   V K L++  K +  A         
Sbjct: 27  LPIV-KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVNA--------- 75

Query: 117 QMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV 176
                  +++ T LH A + G+ + VK+L+E   N P  A   G TPL++AA  G  + V
Sbjct: 76  -----KAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETV 129

Query: 177 AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY 236
             +LEK +S A     G T LH A       V E LL +  H        G TPLH + +
Sbjct: 130 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHVAVH 188

Query: 237 LGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGG 296
               DI  LLL   G S      +   T L +AA Q    +A +++ +     +     G
Sbjct: 189 HNNLDIVKLLLP-RGGSPHSPAWN-GYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQG 245

Query: 297 WNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
              LH      H   +  LL     ++  +  N+ G TPLH+
Sbjct: 246 VTPLHLAAQEGHAEMVALLLS---KQANGNLGNKSGLTPLHL 284

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  131 bits (331), Expect = 2e-33
 Identities = 70/267 (26%), Positives = 111/267 (41%), Gaps = 27/267 (10%)

Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALHE 132
               G +PLH AA+ G    V  L+E  A                      ++  T LH 
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEAS----------------QACMTKKGFTPLHV 152

Query: 133 AVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPN 192
           A + G +   ++L+E   + P +A  NG TPL++A    +  +V  +L +  S      N
Sbjct: 153 AAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN 211

Query: 193 GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGS 252
           G T LH A      +V   LL             G TPLH +A  G  ++ ALLL     
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSAN-AESVQGVTPLHLAAQEGHAEMVALLLS---K 267

Query: 253 SALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESK 311
            A     ++  +T L + A +GH  +A  +I H     D     G+  LH      +   
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKL 326

Query: 312 LKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           +K LL+   +++ ++ K ++G +PLH 
Sbjct: 327 VKFLLQ---HQADVNAKTKLGYSPLHQ 350

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  129 bits (328), Expect = 4e-33
 Identities = 78/309 (25%), Positives = 126/309 (40%), Gaps = 43/309 (13%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEENTA 129
             KG +PLH AAK G+  V ++L+E      A                      +   T 
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA--------------------GKNGLTP 182

Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           LH AV   NLD VK+L+  G + P+S   NG TPL++AA +   ++   +L+   SA  +
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241

Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
              G T LH A     A++V  LL+K+ +     +  G TPLH  A  G   +  +L++ 
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGN-LGNKSGLTPLHLVAQEGHVPVADVLIK- 299

Query: 250 DGSSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLH 308
                ++    R   T L +A+  G+  L   ++ H  +  +     G++ LH      H
Sbjct: 300 --HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGH 356

Query: 309 ESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVR----QIGKG-DTQAVN 363
              +  LLK     +  +E +  G TPL I A         +         +       +
Sbjct: 357 TDIVTLLLK---NGASPNEVSSDGTTPLAI-A--KRLGYISVTDVLKVVTDETSFVLVSD 410

Query: 364 KKKISVKHI 372
           K ++S    
Sbjct: 411 KHRMSFPET 419

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  127 bits (323), Expect = 2e-32
 Identities = 63/266 (23%), Positives = 103/266 (38%), Gaps = 25/266 (9%)

Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
               G +PLH A+  G   +VK L++         +  +         +N +  T LH A
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQ---------RGASPNV------SNVKVETPLHMA 54

Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
            + G+ +  K L++       +   + +TPL+ AA  G   MV  +LE  ++       G
Sbjct: 55  ARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 113

Query: 194 KTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSS 253
            T LH A      + V  LL K+          G+TPLH +A  G   +  LLLE D   
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLERD--- 169

Query: 254 ALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKL 312
           A      +  +T L +A    +  +   ++             G+  LH           
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVA 228

Query: 313 KRLLKDPLYKSFIDEKNEMGNTPLHI 338
           + LL+   Y    + ++  G TPLH+
Sbjct: 229 RSLLQ---YGGSANAESVQGVTPLHL 251

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  126 bits (318), Expect = 1e-31
 Identities = 59/281 (20%), Positives = 110/281 (39%), Gaps = 29/281 (10%)

Query: 70  LLIQTNAK-------GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLT 122
           LL++ +A        G +PLH A       +VK+L+          +  +  +       
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP---------RGGSPHS------P 208

Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK 182
                T LH A +   ++  + L++ G +   + +V G TPL++AA  G  +MVA +L K
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSK 267

Query: 183 CSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDI 242
            ++      +G T LH         V + L+     +       G+TPLH +++ G   +
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD-ATTRMGYTPLHVASHYGNIKL 326

Query: 243 TALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLH 301
              LL+     A +  K +   + L  AA QGH  +   ++ +     + V + G   L 
Sbjct: 327 VKFLLQHQ---ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLA 382

Query: 302 FLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATL 342
                 + S    L       SF+   ++   +    +  +
Sbjct: 383 IAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEI 423

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  124 bits (314), Expect = 3e-31
 Identities = 76/286 (26%), Positives = 120/286 (41%), Gaps = 39/286 (13%)

Query: 64  LEICPSLLIQTNAK-------GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAW 116
            E+    L+Q  AK         +PLH AA+ G   +VK+L+E                 
Sbjct: 60  TEVA-KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE----------------- 101

Query: 117 QMLG----LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGS 172
                   L     +T LH A + G+++ V  L+E   +        G TPL++AA  G 
Sbjct: 102 --NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGK 158

Query: 173 KKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLH 232
            ++   +LE+ +     G NG T LH AV+    D+V+ LL +           G+TPLH
Sbjct: 159 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLH 217

Query: 233 HSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLV 292
            +A     ++   LL++ G SA         T L +AA +GH  +   +++      +L 
Sbjct: 218 IAAKQNQVEVARSLLQY-GGSANAESVQGV-TPLHLAAQEGHAEMVALLLSKQANG-NLG 274

Query: 293 DNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           +  G   LH +    H      L+K   +   +D    MG TPLH+
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIK---HGVMVDATTRMGYTPLHV 317

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  115 bits (290), Expect = 6e-28
 Identities = 53/242 (21%), Positives = 91/242 (37%), Gaps = 27/242 (11%)

Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALHE 132
               G +PLH AAK  +  V + L+++                       + +  T LH 
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN----------------AESVQGVTPLHL 251

Query: 133 AVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPN 192
           A Q G+ + V +L+    N     N +G TPL++ A  G   +   +++           
Sbjct: 252 AAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 310

Query: 193 GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGS 252
           G T LH A +     +V+ LL  +  +   +   G++PLH +A  G  DI  LLL+   +
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVN-AKTKLGYSPLHQAAQQGHTDIVTLLLK---N 366

Query: 253 SALILDKDRK-MTALLMAASQGHESLA---GTIIAHYPECYDLVDNGGWNVLHFLMVSLH 308
            A   +      T L +A   G+ S+      +         + D    +    +   L 
Sbjct: 367 GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV-LVSDKHRMSFPETVDEILD 425

Query: 309 ES 310
            S
Sbjct: 426 VS 427

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  109 bits (275), Expect = 4e-26
 Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 35/231 (15%)

Query: 64  LEICPSLLIQ----TNAK---GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTA 115
           +E+    L+Q     NA+   G +PLH AA+ G   +V +L+   A              
Sbjct: 225 VEVA-RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN------------- 270

Query: 116 WQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKM 175
                L N+   T LH   Q G++    +L++ G     +    G TPL++A+  G+ K+
Sbjct: 271 ---GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKL 326

Query: 176 VAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSA 235
           V  +L+  +        G + LH A      D+V  LL        E    G TPL  + 
Sbjct: 327 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSSDGTTPLAIAK 385

Query: 236 YLGLKDITALLLEFDGSSALILDKDR-KMTA-------LLMAASQGHESLA 278
            LG   +T +L      ++ +L  D+ +M+        L ++  +G E ++
Sbjct: 386 RLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSEDEGEELIS 436

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 222 ERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGT 280
              + G TPLH ++++G   I   LL+     A     + K  T L MAA  GH  +A  
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQ---RGASPNVSNVKVETPLHMAARAGHTEVAKY 65

Query: 281 IIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           ++ +  +  +         LH      H + +K LL+     +  +     G+TPLHI
Sbjct: 66  LLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLE---NNANPNLATTAGHTPLHI 119

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  120 bits (304), Expect = 5e-31
 Identities = 59/289 (20%), Positives = 99/289 (34%), Gaps = 56/289 (19%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEENTA 129
             + +  L  A +     +V+ L+E       +                     E   T 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-------------------EEEGGWTP 42

Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV-------AEILEK 182
           LH AVQ    D V++L+  G + P     NG TP  +AA  GS K++       A++ E 
Sbjct: 43  LHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC 101

Query: 183 CSSAAHDGPNGKTALHAAVNSYAADVVEKLLA---------KKRHLTRERDDCGWTPLHH 233
                     G TA   A        ++ L           K +         G T L  
Sbjct: 102 DF-------YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

Query: 234 SAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTI----IAHYPECY 289
           +A  G  ++  +LL+  G+     D   +  AL+ A     +S    I    + H  +  
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGR-NALIHALLSSDDSDVEAITHLLLDHGADV- 212

Query: 290 DLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           ++    G   L   +   H   ++RLL+       I++ +  G T L +
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  110 bits (278), Expect = 2e-27
 Identities = 49/239 (20%), Positives = 78/239 (32%), Gaps = 58/239 (24%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEE 126
             +   G +P   AA  G   ++K+ +                             +   
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC--------------------DFYG 105

Query: 127 NTALHEAVQCGNLDAVKILMEAGPN---------FPYSANVNGETPLYMAAARGSKKMVA 177
            TA  EA   G + A+K L + G N                 G T L  AA +G  +++ 
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL- 164

Query: 178 EILEKCSSAAHDGPN-------GKTALHAAV----NSYAADVVEKLLAKKRHLTRERDDC 226
           +IL         G +       G+ AL  A+    +S    +   LL     +   R + 
Sbjct: 165 KIL-----LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VRGER 218

Query: 227 GWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAH 284
           G TPL  +       +   LLE +     I D D    TALL+A     + +A  +   
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEH--IEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  109 bits (275), Expect = 5e-27
 Identities = 49/266 (18%), Positives = 89/266 (33%), Gaps = 51/266 (19%)

Query: 64  LEICPSLL-------IQTNAKGDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCC 111
           +++   LL        Q    G +PLH A +  R  +V++L+        +         
Sbjct: 18  VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR--------- 68

Query: 112 AKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARG 171
                       +   T    A   G++  +K+ +  G +     +  G T    AA  G
Sbjct: 69  -----------KKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYG 116

Query: 172 SKKMV-------AEILEK---CSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTR 221
             K +       A +  +             G TAL  A      +V++ LL +      
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 222 ERDDCGWTPLHHSAYLG----LKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHES 276
             D+ G   L H+        ++ IT LLL+     A +  +  +  T L++A  + H  
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLD---HGADVNVRGERGKTPLILAVEKKHLG 233

Query: 277 LAGTIIAHYPECYDLVDNGGWNVLHF 302
           L   ++       +  D+ G   L  
Sbjct: 234 LVQRLLEQEHIEINDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.9 bits (206), Expect = 8e-18
 Identities = 46/209 (22%), Positives = 66/209 (31%), Gaps = 18/209 (8%)

Query: 156 ANVNGETPLYMAAARGSKKMVAEILEKCSSA-AHDGPNGKTALHAAVNSYAADVVEKLLA 214
           A V     L  A       +V ++LE  ++    +   G T LH AV     D+VE LL 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 215 KKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK-MTALLMAASQG 273
                   R   G TP   +A  G   +  L L      A + + D    TA + AA  G
Sbjct: 61  HGADPV-LRKKNGATPFLLAAIAGSVKLLKLFLSKG---ADVNECDFYGFTAFMEAAVYG 116

Query: 274 HESLAGTIIAH---------YPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSF 324
                  +              E  + +  GG   L       H   LK LL +    + 
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE--MGAD 174

Query: 325 IDEKNEMGNTPLHILATL-SARTCNEIVR 352
           ++  + MG   L              I  
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITH 203

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 76.7 bits (190), Expect = 9e-16
 Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 42/159 (26%)

Query: 73  QTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHE 132
           +    G + L  AA+ G   V+K+L++       A               +     AL  
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA--------------CDNMGRNALIH 188

Query: 133 AVQCGNLDA----VKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKC 183
           A+   +         +L++ G      A+VN     G+TPL +A  +    +V  +LE  
Sbjct: 189 ALLSSDDSDVEAITHLLLDHG------ADVNVRGERGKTPLILAVEKKHLGLVQRLLE-- 240

Query: 184 SSAAHDGPN-------GKTALHAAVNSYAADVVEKLLAK 215
                +          GKTAL  AV      + E L  +
Sbjct: 241 ----QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.7 bits (112), Expect = 8e-06
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 23/88 (26%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
           N +   G +PL  A +     +V+ L+E         +   +     +  T+ +  TAL 
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLE---------QEHIE-----INDTDSDGKTALL 258

Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVN 159
            AV+       ++L + G      A+ +
Sbjct: 259 LAVELKLKKIAELLCKRG------ASTD 280

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  120 bits (303), Expect = 6e-31
 Identities = 48/282 (17%), Positives = 78/282 (27%), Gaps = 47/282 (16%)

Query: 78  GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC 136
           GD+ LH A        +  L+ F A  +   ++             N+   TALH A   
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-------------NDLGQTALHLAAIL 55

Query: 137 GNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV-------AEILEKCS 184
           G    V+ L  AG      A V      G T L++A    +                  S
Sbjct: 56  GEASTVEKLYAAG------AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS 109

Query: 185 ------SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
                 S                     +  E      R      +  G TPLH +    
Sbjct: 110 DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK 169

Query: 239 LKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAH--YPECYDLVDNGG 296
             ++  LL +  G+     +     T L +A      S+   ++     P        GG
Sbjct: 170 DAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP---TARMYGG 225

Query: 297 WNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
              L   ++  +    + L     + +   E      +P   
Sbjct: 226 RTPLGSALLRPNPILARLLRA---HGAPEPEDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  103 bits (259), Expect = 7e-25
 Identities = 49/241 (20%), Positives = 72/241 (29%), Gaps = 32/241 (13%)

Query: 119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPY--SANVNGETPLYMAAARGSKKMV 176
            G   E+ +TALH AV   +   +  L+       Y    N  G+T L++AA  G    V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 177 -------AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAK--------KRHLTR 221
                  A +L            G TALH A    A      LL                
Sbjct: 62  EKLYAAGAGVLVAER-------GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114

Query: 222 ERDDC----GWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESL 277
           +  DC       P    +    ++      E         + D   T L +A       +
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH-TPLHVAVIHKDAEM 173

Query: 278 AGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLH 337
              +     +        G   LH  + +   S L+ LLK     +    +   G TPL 
Sbjct: 174 VRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK---AGADPTARMYGGRTPLG 230

Query: 338 I 338
            
Sbjct: 231 S 231

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  101 bits (253), Expect = 4e-24
 Identities = 39/211 (18%), Positives = 67/211 (31%), Gaps = 21/211 (9%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
                 G + LH A +        VL++  +                    +     A  
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQ-PRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV-------AEILEKCS 184
           ++      +      +       + N +G TPL++A      +MV       A++ +   
Sbjct: 131 DSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP-- 187

Query: 185 SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITA 244
               +   G+T LH AV + AA V+E LL      T  R   G TPL  +       +  
Sbjct: 188 ----EPTCGRTPLHLAVEAQAASVLELLLKAGADPT-ARMYGGRTPLGSALLRPNPILAR 242

Query: 245 LLLEFDGSSALILDKDRKMTALLMAASQGHE 275
           LL    G+       D+  +    + S    
Sbjct: 243 LLRAH-GAPEPEDGGDKL-SPCSSSGSDSDS 271

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  100 bits (251), Expect = 8e-24
 Identities = 46/250 (18%), Positives = 73/250 (29%), Gaps = 47/250 (18%)

Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEENT 128
            N  G + LH AA  G  + V+ L                                  +T
Sbjct: 41  QNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA--------------------ERGGHT 80

Query: 129 ALHEAVQCGNLDAVKILMEAGPN---------FPYSANVN---GETPLYMAAARGSKKMV 176
           ALH A +        +L++  P+            S +        P  + +    +   
Sbjct: 81  ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140

Query: 177 AEILEKCSSAAH----DGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLH 232
               E           +  +G T LH AV    A++V  L      L +    CG TPLH
Sbjct: 141 EPRDE--DWRLQLEAENY-DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197

Query: 233 HSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLV 292
            +       +  LLL+  G+         + T L  A  + +  LA  + AH        
Sbjct: 198 LAVEAQAASVLELLLKA-GADPTARMYGGR-TPLGSALLRPNPILARLLRAHGAPE-PED 254

Query: 293 DNGGWNVLHF 302
                +    
Sbjct: 255 GGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 79.9 bits (198), Expect = 7e-17
 Identities = 34/230 (14%), Positives = 64/230 (27%), Gaps = 54/230 (23%)

Query: 5   LYEAATNGEIE---------PFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESV 55
           L+ A                P +     +     + +      H   A  S  N E E  
Sbjct: 82  LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141

Query: 56  STKFVEQILEICPSLLIQTNA-------KGDSPLHAAAKCGRPAVVKVLIEF-----AKK 103
                                        G +PLH A       +V++L +         
Sbjct: 142 P-------------RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP- 187

Query: 104 QPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETP 163
                                   T LH AV+      +++L++AG + P +    G TP
Sbjct: 188 ------------------EPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTP 228

Query: 164 LYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLL 213
           L  A  R +  +   +    +    DG +  +   ++ +   +D  ++  
Sbjct: 229 LGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGD 278

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 66.4 bits (163), Expect = 3e-12
 Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 26/115 (22%)

Query: 72  IQTNAKGDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEE 126
                 G +PLH A +    +V+++L++      A+                        
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR--------------------MYGG 225

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE 181
            T L  A+   N    ++L   G         +  +P   + +        E  E
Sbjct: 226 RTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  121 bits (305), Expect = 2e-30
 Identities = 45/291 (15%), Positives = 94/291 (32%), Gaps = 35/291 (12%)

Query: 75  NAK-GDSPLHAAAKCGRPAVVKVLIEF-AKKQPT-----AMKCCAKTAWQMLGLTNEEEN 127
           +   G  P+H A    +  +V  L+E   ++              +       + + +  
Sbjct: 80  SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQ 139

Query: 128 TALHEAVQCGN--LDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSS 185
           TALH  V  G   L+ +KIL++ G + P + +   ETPL  A    +++   +++     
Sbjct: 140 TALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNRE-ALDLMMDTVP 197

Query: 186 AAHD------GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGL 239
           +            G + LH A+     DV  + +     +    D+    PL+ S    +
Sbjct: 198 SKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN-MEDNEHTVPLYLSVRAAM 256

Query: 240 KDITALLLE------------FDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPE 287
             +T  LL+             +G++ L          +  AA    + +   +     E
Sbjct: 257 VLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWL-DFVPAAADPSKQEVLQLLQEKLDE 315

Query: 288 CYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                 N G             +  +  L      + +  ++        +
Sbjct: 316 V-VRSLNTGAGGAVKRKKKAAPAVKRMKLA---PSAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  117 bits (296), Expect = 3e-29
 Identities = 53/274 (19%), Positives = 95/274 (34%), Gaps = 48/274 (17%)

Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
           ++ +    +H AA+ G+   V+ LIE            + T        N    TALH A
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIE---------TGVSPTI------QNRFGCTALHLA 60

Query: 134 VQCGNLDAVKILMEAGPNFPYSANVN---GETPLYMAAARGSKKMVAEILEKCSSAAHDG 190
            + G +D  K L   G         +   G+ P+++A       +V   L     A    
Sbjct: 61  CKFGCVDTAKYLASVG------EVHSLWHGQKPIHLAVMANKTDLV-VAL--VEGAKER- 110

Query: 191 PNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGL--KDITALLLE 248
             G+            +V E     K          G T LH    LG    ++  +L++
Sbjct: 111 --GQMPESLLNECDEREVNEIGSHVK-------HCKGQTALHWCVGLGPEYLEMIKILVQ 161

Query: 249 FDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECY----DLVDNGGWNVLHFLM 304
             G+S    DK  + T L+ A    +      ++   P       D  +  G + LH+ +
Sbjct: 162 L-GASPTAKDKADE-TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAI 219

Query: 305 VSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           +   E    R ++       ++ ++     PL++
Sbjct: 220 LINWEDVAMRFVE---MGIDVNMEDNEHTVPLYL 250

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  114 bits (287), Expect = 5e-28
 Identities = 48/283 (16%), Positives = 85/283 (30%), Gaps = 50/283 (17%)

Query: 70  LLIQTNA-------KGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGL 121
            LI+T          G + LH A K G     K L                         
Sbjct: 38  RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH------------------ 79

Query: 122 TNEEEN-TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV-AEI 179
            +       +H AV     D V  L+E            G+ P  +      +++     
Sbjct: 80  -SLWHGQKPIHLAVMANKTDLVVALVEGA-------KERGQMPESLLNECDEREVNEIGS 131

Query: 180 LEKCSSAAHDGPNGKTALHAAV--NSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYL 237
             K          G+TALH  V       ++++ L+      T  +D    TPL  +   
Sbjct: 132 HVKHC-------KGQTALHWCVGLGPEYLEMIKILVQLGASPT-AKDKADETPLMRAMEF 183

Query: 238 GLKDITALLLEFDGSS--ALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDN 294
             ++   L+++   S     +   +++  + L  A     E +A   +    +  ++ DN
Sbjct: 184 RNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDN 242

Query: 295 GGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLH 337
                L+  + +      K LL+              G T L 
Sbjct: 243 EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP 285

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  102 bits (256), Expect = 6e-24
 Identities = 42/290 (14%), Positives = 87/290 (30%), Gaps = 66/290 (22%)

Query: 5   LYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQIL 64
                   E E    + +      V H    T LH        +  E           ++
Sbjct: 115 ESLLNECDERE----VNEIGSH--VKHCKGQTALHW-CVGLGPEYLE-----------MI 156

Query: 65  EICPSLLIQ----TNAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQ 117
           +    +L+Q      AK    ++PL  A +      + ++++    + +           
Sbjct: 157 K----ILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLR--------- 203

Query: 118 MLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGS 172
            L   N++ N+ LH A+     D     +E G       +VN        PLY++     
Sbjct: 204 -LDYANKQGNSHLHWAILINWEDVAMRFVEMG------IDVNMEDNEHTVPLYLSVRAAM 256

Query: 173 KKMVAEILEK------CSSAAHDG-------PNGKTALHAAVNSYAADVVEKLLAKKRHL 219
             +  E+L+K       +   H+G             + AA +    +V++ L  K   +
Sbjct: 257 VLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316

Query: 220 TRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMA 269
                + G              +  + L    +      + R   +  ++
Sbjct: 317 V-RSLNTGAGGAVKRKKKAAPAVKRMKLA-PSAPVRTRSRSRA-RSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 77.2 bits (191), Expect = 2e-15
 Identities = 31/190 (16%), Positives = 58/190 (30%), Gaps = 28/190 (14%)

Query: 156 ANVN-----GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVE 210
            N           +++AA +G    V  ++E   S       G TALH A      D  +
Sbjct: 11  LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAK 70

Query: 211 KLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAA 270
            L +     +      G  P+H +      D+   L+E    +      +R      +  
Sbjct: 71  YLASVGEVHS---LWHGQKPIHLAVMANKTDLVVALVE---GAK-----ERGQMPESLLN 119

Query: 271 SQGHESLAGTIIAHYPECYDLVDNGGWNVLHF--LMVSLHESKLKRLLKDPLYKSFIDEK 328
                 +             +    G   LH+   +   +   +K L++     +    K
Sbjct: 120 ECDEREVNEIGS-------HVKHCKGQTALHWCVGLGPEYLEMIKILVQ---LGASPTAK 169

Query: 329 NEMGNTPLHI 338
           ++   TPL  
Sbjct: 170 DKADETPLMR 179

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 23/167 (13%), Positives = 39/167 (23%), Gaps = 49/167 (29%)

Query: 222 ERDDCGWTPLHHSAYLGLKDITALLLE---------FDGSSALIL--------------- 257
           + DD     +H +A  G  D    L+E           G +AL L               
Sbjct: 15  KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 258 ------DKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESK 311
                     +   + +A       L   ++             G      L        
Sbjct: 75  VGEVHSLWHGQ-KPIHLAVMANKTDLVVALVEG-------AKERGQMPESLLNECDEREV 126

Query: 312 LKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQ-IGKG 357
            +              K+  G T LH           E+++  +  G
Sbjct: 127 NEIG---------SHVKHCKGQTALHW-CVGLGPEYLEMIKILVQLG 163

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  116 bits (294), Expect = 1e-29
 Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 31/207 (14%)

Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
             A   SPLH A   G  + VK+L++    Q                    + +T L  A
Sbjct: 88  ITADHVSPLHEACLGGHLSCVKILLK-HGAQVNG--------------VTADWHTPLFNA 132

Query: 134 VQCGNLDAVKILMEAGPNFPYSANVN----GETPLYMAAARGSKKMVAEILEKCSSAAHD 189
              G+ D V +L++ G      A+V       +P++ AA RG  + V  ++    +  H 
Sbjct: 133 CVSGSWDCVNLLLQHG------ASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 186

Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
             +  T L+ A  +     V+KLL     +   +     +PLH       +++  LL++F
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLLESGADV--NQGKGQDSPLHAVVRTASEELACLLMDF 244

Query: 250 DGSSALILDKDRK-MTALLMAASQGHE 275
               A    K+ +    + +   +   
Sbjct: 245 G---ADTQAKNAEGKRPVELVPPESPL 268

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  109 bits (276), Expect = 4e-27
 Identities = 53/269 (19%), Positives = 91/269 (33%), Gaps = 60/269 (22%)

Query: 71  LIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
           L+       SP+H AA  G    ++ LI              +     + +   +  + L
Sbjct: 52  LMGDAVSDWSPMHEAAIHGHQLSLRNLIS-------------QGW--AVNIITADHVSPL 96

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDG 190
           HEA   G+L  VKIL++ G         +  TPL+ A   GS   V  +L+  +S   + 
Sbjct: 97  HEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 155

Query: 191 PNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFD 250
            +  + +H A      + V  L+A   ++   +     TPL+ +     +     LLE  
Sbjct: 156 -DLASPIHEAARRGHVECVNSLIAYGGNID-HKISHLGTPLYLACENQQRACVKKLLE-- 211

Query: 251 GSSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHE 309
            S A + ++ +   + L        E      +A       L+D G              
Sbjct: 212 -SGADV-NQGKGQDSPLHAVVRTASEE-----LACL-----LMDFGA------------- 246

Query: 310 SKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                   D         KN  G  P+ +
Sbjct: 247 --------D------TQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 97.6 bits (244), Expect = 7e-23
 Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 23/180 (12%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
            A   +PL  A   G    V +L++  A  QP                   +  + +HEA
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-----------------SDLASPIHEA 164

Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
            + G+++ V  L+  G N       +  TPLY+A     +    + L +  +  + G   
Sbjct: 165 ARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRA-CVKKLLESGADVNQGKGQ 222

Query: 194 KTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSS 253
            + LHA V + + ++   L+         ++  G  P+          +  L LE +G+S
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQ-AKNAEGKRPVELVPPES--PLAQLFLEREGAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 30/97 (30%)

Query: 70  LLIQTNAK------GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLT 122
            L+++ A        DSPLHA  +     +  +L++F A  Q                  
Sbjct: 208 KLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQ----------------AK 251

Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN 159
           N E    +        L  +  L   G      A++ 
Sbjct: 252 NAEGKRPVELVPPESPLAQL-FLEREG------ASLP 281

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  118 bits (298), Expect = 2e-29
 Identities = 60/364 (16%), Positives = 105/364 (28%), Gaps = 82/364 (22%)

Query: 5   LYEAATNGEIEPFNGIAKDN-----LRSIVTHNNKHTV--LHVNIARQSLKNKEGESVST 57
           L EA+ +G I+        +           + N       H N+   +    E      
Sbjct: 41  LLEASYDGYIKR-QRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLH 99

Query: 58  KFVEQILEICPSLL-----IQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCA 112
                   I   +      I       + LH  A        + LI    K+   +   A
Sbjct: 100 TEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE--CIAAGA 157

Query: 113 KTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGS 172
                 +   + +ENT L  AV       V  LM+AG + P   N +  + L+ AAA   
Sbjct: 158 D-----VNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRD 211

Query: 173 KKMVAEILEKCSSAAHDGPN-------GKTALHAAVNSYAADVVE--KLL--------AK 215
              +   +    ++     +       G TAL    ++   D V   KLL          
Sbjct: 212 FG-MMVYM---LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 267

Query: 216 KRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK-MTALLMAASQGH 274
                      G T LH++A +    I   L+   G  +    +D    T +++AA +G 
Sbjct: 268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG--SNKDKQDEDGKTPIMLAAQEGR 325

Query: 275 ESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNT 334
             +   +I             G +                          ++  +   +T
Sbjct: 326 IEVVMYLIQQ-----------GAS--------------------------VEAVDATDHT 348

Query: 335 PLHI 338
              +
Sbjct: 349 ARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  107 bits (269), Expect = 1e-25
 Identities = 52/281 (18%), Positives = 100/281 (35%), Gaps = 55/281 (19%)

Query: 28  IVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQT----NAK---GDS 80
           I+   +  TVLH      +  +      S +  E ++       I      NA     ++
Sbjct: 119 IIDPRHNRTVLH--WI--ASNS------SAEKSEDLIVHEAKECIAAGADVNAMDCDENT 168

Query: 81  PLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNL 139
           PL  A    R  +V  L++  A                     N+ E +ALH+A    + 
Sbjct: 169 PLMLAVLARRRRLVAYLMKAGADPT-------IY---------NKSERSALHQAAANRDF 212

Query: 140 DAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV----------AEILEKCS 184
             +  ++    +     ++      G T L + A    +  V          A++    +
Sbjct: 213 GMMVYMLN---STKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269

Query: 185 SAAHDGPN-GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDIT 243
           +        G+TALH A       +V+ L+ +K     ++D+ G TP+  +A  G  ++ 
Sbjct: 270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 329

Query: 244 ALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAH 284
             L++  G+S   +D     TA  +A +  H ++       
Sbjct: 330 MYLIQ-QGASVEAVDATDH-TARQLAQANNHHNIVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 91.9 bits (229), Expect = 2e-20
 Identities = 40/274 (14%), Positives = 71/274 (25%), Gaps = 72/274 (26%)

Query: 73  QTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHE 132
           Q+       L  A+  G     +  +                                 +
Sbjct: 32  QSITSSQHSLLEASYDGYIKRQRNEL------------------------QHYSLYPNPQ 67

Query: 133 AVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPN 192
               GN              P          L+  AA GS  +  E + + S    D  +
Sbjct: 68  GYGNGNDFLGDFNHTNLQI-PTEPEPESPIKLHTEAA-GSYAIT-EPITRESVNIIDPRH 124

Query: 193 GKTALHAAVNSYAADVVEKLLAKKRHLTR-------ERDDCGWTPLHHSAYLGLKDITAL 245
            +T LH   ++ +A+  E L+  +              D    TPL  +     + + A 
Sbjct: 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 184

Query: 246 LLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLM 304
           L++   + A     ++   +AL  AA+     +                           
Sbjct: 185 LMK---AGADPTIYNKSERSALHQAAANRDFGMM-------------------------- 215

Query: 305 VSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                     +L     K  I+E +  G T L I
Sbjct: 216 --------VYMLNSTKLKGDIEELDRNGMTALMI 241

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 17/78 (21%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIE-FAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
           +  G +P+  AA+ GR  VV  LI+  A  +                  +  ++TA   A
Sbjct: 310 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVE----------------AVDATDHTARQLA 353

Query: 134 VQCGNLDAVKILMEAGPN 151
               + + V I     P 
Sbjct: 354 QANNHHNIVDIFDRCRPE 371

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  116 bits (293), Expect = 6e-29
 Identities = 58/306 (18%), Positives = 111/306 (36%), Gaps = 81/306 (26%)

Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEENT 128
           ++ +  +PLH AA   R  +V++L++      AK                    ++    
Sbjct: 54  SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK--------------------DKGGLV 93

Query: 129 ALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV------- 176
            LH A   G+ +  ++L++ G      A VN       TPL+ AA++   ++        
Sbjct: 94  PLHNACSYGHYEVTELLLKHG------ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147

Query: 177 AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLL--------AKKRHLTR------- 221
           A+             +GK+A+  A      + +            A++  L +       
Sbjct: 148 ADPTLVNC-------HGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200

Query: 222 -----ERDDCGWTPLHHSA---YLGLKDITALLLEFDGSSALILDKDRK-MTALLMAASQ 272
                ++     T LH +    +   K +  LLL      A + +K++  MT L +AA +
Sbjct: 201 EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG---ANVNEKNKDFMTPLHVAAER 257

Query: 273 GHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMG 332
            H  +   +  H  +  + +D+ G   LH   ++ H    + LL    Y S     +  G
Sbjct: 258 AHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLLS---YGSDPSIISLQG 313

Query: 333 NTPLHI 338
            T   +
Sbjct: 314 FTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  114 bits (289), Expect = 2e-28
 Identities = 52/280 (18%), Positives = 95/280 (33%), Gaps = 58/280 (20%)

Query: 72  IQTNAKGDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEE 126
           +    K D  L AA       ++ +L        A                     +  +
Sbjct: 19  LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS--------------------DGRK 58

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILE 181
           +T LH A     +  V++L++ G      A+V+     G  PL+ A + G  ++   +L+
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQHG------ADVHAKDKGGLVPLHNACSYGHYEVTELLLK 112

Query: 182 KCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKD 241
             +          T LH A +    +V   LL+     T   +  G + +  +    L++
Sbjct: 113 HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRE 171

Query: 242 ITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLH 301
                               K  +LL AA +   +     +A                LH
Sbjct: 172 RLTYEF--------------KGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALH 216

Query: 302 FLMVSLHESKL---KRLLKDPLYKSFIDEKNEMGNTPLHI 338
             + SLH  +    + LL+     + ++EKN+   TPLH+
Sbjct: 217 CAVASLHPKRKQVAELLLR---KGANVNEKNKDFMTPLHV 253

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 90.2 bits (225), Expect = 5e-20
 Identities = 47/242 (19%), Positives = 76/242 (31%), Gaps = 60/242 (24%)

Query: 64  LEICPSLLIQTNA-------KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAW 116
           +E+C SLL+   A        G S +  A        +        K  + ++   +   
Sbjct: 137 VEVC-SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF----KGHSLLQAAREADL 191

Query: 117 QMLGL----------TNEEENTALHEAVQCG---NLDAVKILMEAGPNFPYSANVN---- 159
             +              +   TALH AV           ++L+  G      ANVN    
Sbjct: 192 AKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG------ANVNEKNK 245

Query: 160 -GETPLYMAAARGSKKMV-------AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEK 211
              TPL++AA R    ++       A++    S        G+TALH A  +        
Sbjct: 246 DFMTPLHVAAERAHNDVMEVLHKHGAKMNALDS-------LGQTALHRAALAGHLQTCRL 298

Query: 212 LLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAAS 271
           LL+     +      G+T           +    +L     S  +   D     LL A+ 
Sbjct: 299 LLSYGSDPS-IISLQGFTAAQMGN-----EAVQQILS---ESTPMRTSD-VDYRLLEASK 348

Query: 272 QG 273
            G
Sbjct: 349 AG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 80.6 bits (200), Expect = 9e-17
 Identities = 45/247 (18%), Positives = 79/247 (31%), Gaps = 41/247 (16%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA 186
            +AL  A                           +  L  AA  G+++ +  +L   +  
Sbjct: 5   KSALDLADPSAKAVL--------------TGEYKKDELLEAARSGNEEKLMALLTPLNVN 50

Query: 187 --AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITA 244
             A DG    T LH A       +V+ LL     +   +D  G  PLH++   G  ++T 
Sbjct: 51  CHASDG-RKSTPLHLAAGYNRVRIVQLLLQHGADVH-AKDKGGLVPLHNACSYGHYEVTE 108

Query: 245 LLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFL 303
           LLL+     A +   D    T L  AAS+    +   +++H  +   LV+  G + +   
Sbjct: 109 LLLK---HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMA 164

Query: 304 MVSLHESKLKRLLKD--PLYKSF----------------IDEKNEMGNTPLHILATLSAR 345
                  +L    K    L  +                   ++ +   T LH        
Sbjct: 165 PTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHP 224

Query: 346 TCNEIVR 352
              ++  
Sbjct: 225 KRKQVAE 231

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 39/185 (21%), Positives = 62/185 (33%), Gaps = 55/185 (29%)

Query: 28  IVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQ----TNAK---GDS 80
                +  T LH  +A    K K+           + E    LL++     N K     +
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQ-----------VAE----LLLRKGANVNEKNKDFMT 249

Query: 81  PLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQ 135
           PLH AA+     V++VL +      A                     +    TALH A  
Sbjct: 250 PLHVAAERAHNDVMEVLHKHGAKMNAL--------------------DSLGQTALHRAAL 289

Query: 136 CGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKT 195
            G+L   ++L+  G + P   ++ G T   M       + V +IL +  S      +   
Sbjct: 290 AGHLQTCRLLLSYGSD-PSIISLQGFTAAQMGN-----EAVQQILSE--STPMRTSDVDY 341

Query: 196 ALHAA 200
            L  A
Sbjct: 342 RLLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.7 bits (138), Expect = 7e-09
 Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 23/151 (15%)

Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG-LKDITALLLE 248
           G  GK+AL  A    +A  V               +     L  +A  G  + + ALL  
Sbjct: 1   GEFGKSALDLA--DPSAKAVLT------------GEYKKDELLEAARSGNEEKLMALLTP 46

Query: 249 FDGSSALILDKD-RKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSL 307
            +         D RK T L +AA      +   ++ H  +     D GG   LH      
Sbjct: 47  LN---VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYG 102

Query: 308 HESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           H    + LLK   + + ++  +    TPLH 
Sbjct: 103 HYEVTELLLK---HGACVNAMDLWQFTPLHE 130

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  113 bits (286), Expect = 7e-29
 Identities = 60/275 (21%), Positives = 96/275 (34%), Gaps = 66/275 (24%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
                 GD+PLH A   G    V  L+   ++         +     L + N    T LH
Sbjct: 3   TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQG------GRE-----LDIYNNLRQTPLH 51

Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP 191
            AV       V++L+ AG + P + + +G+T  ++A    S       L    SAA    
Sbjct: 52  LAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPT-CLRAL--LDSAAPGTL 107

Query: 192 N-------GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITA 244
           +       G TALH AVN+   + V+ LL +   +       G +PL H+       +  
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167

Query: 245 LLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFL 303
           LLL+     A +  +     +AL  A+ +G   L  T++             G +     
Sbjct: 168 LLLQHG---ANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-----------GAD----- 208

Query: 304 MVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                                   KN   +TPL +
Sbjct: 209 ---------------------SSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  112 bits (284), Expect = 1e-28
 Identities = 48/268 (17%), Positives = 97/268 (36%), Gaps = 51/268 (19%)

Query: 32  NNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAK---GDSPLHAAAKC 88
            +  T LH  IA   ++       +   V +++ +      + +       +PLH A   
Sbjct: 7   EDGDTPLH--IA--VVQG------NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 56

Query: 89  GRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILME 147
             P+VV++L+   A          A          +    TA H A +  +   ++ L++
Sbjct: 57  TLPSVVRLLVTAGASPM-------AL---------DRHGQTAAHLACEHRSPTCLRALLD 100

Query: 148 AGPNFPYSANV---NGETPLYMAAARGSKKMV-------AEILEKCSSAAHDGPNGKTAL 197
           +             +G T L++A     ++ V       A+I         D  +G++ L
Sbjct: 101 SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV------DIKSGRSPL 154

Query: 198 HAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALIL 257
             AV + +  +V+ LL    ++   +   G + LH ++  GL  +   L+      A   
Sbjct: 155 IHAVENNSLSMVQLLLQHGANVN-AQMYSGSSALHSASGRGLLPLVRTLVRSG---ADSS 210

Query: 258 DKDRK-MTALLMAASQGHESLAGTIIAH 284
            K+    T L++A S+    +       
Sbjct: 211 LKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.4 bits (101), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 28/85 (32%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEE 126
           NA+   G S LH+A+  G   +V+ L+        K                    N   
Sbjct: 177 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK--------------------NCHN 216

Query: 127 NTALHEAVQCGNLDAVKILMEAGPN 151
           +T L  A     +D ++       +
Sbjct: 217 DTPLMVARSRRVIDILRGKATRPAS 241

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  112 bits (282), Expect = 2e-28
 Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 22/215 (10%)

Query: 73  QTNAKGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
           Q + +  + LH AA   R  +VK  I   A                      +  +T LH
Sbjct: 37  QPDKENVTLLHWAAINNRIDLVKYYISKGAIVD-------QLG--------GDLNSTPLH 81

Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP 191
            A + G+L  V  LM+ G + P   +  G + +++AA  G   +VA ++ K         
Sbjct: 82  WATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ 140

Query: 192 NGKTALH-AAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFD 250
           NG T L  AA  +++ D    LL     +         T LH +   G   + +LLLE  
Sbjct: 141 NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG 200

Query: 251 GSSALILDKDRK-MTALLMAASQGHESLAGTIIAH 284
              A +  ++ K  +AL +A  + +  +   +   
Sbjct: 201 ---ANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  112 bits (282), Expect = 2e-28
 Identities = 58/280 (20%), Positives = 89/280 (31%), Gaps = 81/280 (28%)

Query: 73  QTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHE 132
             +      +  A + G     + L+E                       ++E  T LH 
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVE---------AGYDVRQ------PDKENVTLLHW 48

Query: 133 AVQCGNLDAVKILMEAGPNFPYSANVN------GETPLYMAAARGSKKMV-------AEI 179
           A     +D VK  +  G      A V+        TPL+ A  +G   MV       A+ 
Sbjct: 49  AAINNRIDLVKYYISKG------AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP 102

Query: 180 LEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG- 238
                        G + +H A       +V  L+AK + +    D  G TPL  +AY   
Sbjct: 103 SLIDG-------EGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYRTH 154

Query: 239 LKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWN 298
             D T LLL F   S  + DK  K TAL  A   G+ +     +        L++ G   
Sbjct: 155 SVDPTRLLLTF-NVSVNLGDKYHKNTALHWAVLAGNTT-----VISL-----LLEAG--- 200

Query: 299 VLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                                   + +D +N  G + L +
Sbjct: 201 ------------------------ANVDAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  104 bits (262), Expect = 1e-25
 Identities = 41/180 (22%), Positives = 66/180 (36%), Gaps = 21/180 (11%)

Query: 72  IQTNAKGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
                   +PLH A + G  ++V  L+++ A                   L + E  + +
Sbjct: 70  QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS----------------LIDGEGCSCI 113

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEIL--EKCSSAAH 188
           H A Q G+   V  L+  G +     + NG TPL  AA R        +L     S    
Sbjct: 114 HLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172

Query: 189 DGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
           D  +  TALH AV +    V+  LL    ++   ++  G + L  +       +   L E
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVD-AQNIKGESALDLAKQRKNVWMINHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 25/85 (29%)

Query: 72  IQTNAKGDSPLHAAAKCGRPAVVKVLIE-----FAKKQPTAMKCCAKTAWQMLGLTNEEE 126
           +      ++ LH A   G   V+ +L+E      A+                    N + 
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ--------------------NIKG 210

Query: 127 NTALHEAVQCGNLDAVKILMEAGPN 151
            +AL  A Q  N+  +  L EA   
Sbjct: 211 ESALDLAKQRKNVWMINHLQEARQA 235

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  112 bits (282), Expect = 2e-28
 Identities = 44/255 (17%), Positives = 83/255 (32%), Gaps = 49/255 (19%)

Query: 48  KNKEGESV--------STKFVEQILEICPSLLIQTNAK---GDSPLHAAAKCGRPAVVKV 96
             ++G+S               +++      L   N +     +PLH A    +P + + 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 97  LIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYS 155
           L+                       L +   NT LH A + G L +V +L ++       
Sbjct: 64  LLGAGCD----------------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107

Query: 156 ANVN-----GETPLYMAAARGSKKMV-------AEILEKCSSAAHDGPNGKTALHAAVNS 203
           + +      G T L++A+  G   +V       A++  +      +  NG+TALH AV+ 
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ------EPCNGRTALHLAVDL 161

Query: 204 YAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKM 263
              D+V  LL     +       G++P   +       I   L +      L +  + + 
Sbjct: 162 QNPDLVSLLLKCGADVN-RVTYQGYSPYQLTWGRPSTRIQQQLGQL-TLENLQMLPESE- 218

Query: 264 TALLMAASQGHESLA 278
                          
Sbjct: 219 DEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  108 bits (271), Expect = 6e-27
 Identities = 48/225 (21%), Positives = 79/225 (35%), Gaps = 34/225 (15%)

Query: 73  QTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHE 132
           Q    GDS LH A      A+   +I   K                L   N  + T LH 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-----------LNFQNNLQQTPLHL 51

Query: 133 AVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCSSAA 187
           AV     +  + L+ AG       +       G TPL++A  +G    V  + + C++  
Sbjct: 52  AVITNQPEIAEALLGAG------CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105

Query: 188 HDGP------NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDC-GWTPLHHSAYLGLK 240
                     NG T LH A       +VE L++    +   ++ C G T LH +  L   
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCNGRTALHLAVDLQNP 164

Query: 241 DITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAH 284
           D+ +LLL+     A +     +  +   +   +    +   +   
Sbjct: 165 DLVSLLLKCG---ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 78.7 bits (195), Expect = 9e-17
 Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 25/144 (17%)

Query: 73  QTNAKGDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEEN 127
            TN  G + LH A+  G   +V++L+       A+                         
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ-------------------EPCNGR 152

Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
           TALH AV   N D V +L++ G +        G +P  +   R S ++  ++ +      
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211

Query: 188 HDGPNGKTALHAAVNSYAADVVEK 211
              P  +        S   +  E 
Sbjct: 212 QMLPESEDEESYDTESEFTEFTED 235

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 70.7 bits (174), Expect = 5e-14
 Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 22/160 (13%)

Query: 192 NGKTALHAAV----NSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL 247
           +G + LH A+     +   +V+ ++      L   +++   TPLH +      +I   LL
Sbjct: 7   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALL 65

Query: 248 EFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAH-----YPECYDLVDNGGWNVLHF 302
              G    + D     T L +A  QG  +  G +                +  G   LH 
Sbjct: 66  GA-GCDPELRDFRGN-TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 303 LMVSLHESKLKRLLK---DPLYKSFIDEKNEM-GNTPLHI 338
             +  +   ++ L+    D      ++ +    G T LH+
Sbjct: 124 ASIHGYLGIVELLVSLGAD------VNAQEPCNGRTALHL 157

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  110 bits (277), Expect = 7e-28
 Identities = 43/216 (19%), Positives = 73/216 (33%), Gaps = 41/216 (18%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
             K   G  PLH +       +   L+                         ++   T  
Sbjct: 30  LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP-------------DDSGWTPF 76

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV-------AE 178
           H A   GNL+ VK L +         ++N     G T L++A  +   ++        A 
Sbjct: 77  HIACSVGNLEVVKSLYDRPLK----PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132

Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
           +  K           +  LH A +  +  ++E L    +     +D  GWTPL H+   G
Sbjct: 133 VRIKDK-------FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185

Query: 239 LKDITALLLEFDGSSALILDKDRKMTALLMAASQGH 274
             D   LL+E  G+   ++D      A  +A ++  
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGA-KAEDVALNEQV 220

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  108 bits (272), Expect = 3e-27
 Identities = 49/272 (18%), Positives = 83/272 (30%), Gaps = 70/272 (25%)

Query: 78  GDSPLHAAAKCGR-PAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
            + PLH A        V ++L         K                    +++    LH
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQK--------------------DQDGRIPLH 41

Query: 132 EAVQCGNLDAVKILMEAG--PNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA--- 186
            +V     +    L+      N     + +G TP ++A + G+ ++V  + ++       
Sbjct: 42  WSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN 101

Query: 187 AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
                 G T LH AV     +V + L+     + R +D     PLH +A +G   +  LL
Sbjct: 102 KITN-QGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELL 159

Query: 247 LEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVS 306
                S+    DK    T L  A ++GH        A       LV+  G          
Sbjct: 160 CGLGKSAVNWQDKQGW-TPLFHALAEGHGD-----AAVL-----LVEKYGAE-------- 200

Query: 307 LHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                              D  +  G     +
Sbjct: 201 ------------------YDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 91.7 bits (229), Expect = 3e-21
 Identities = 40/180 (22%), Positives = 59/180 (32%), Gaps = 34/180 (18%)

Query: 78  GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
           G +P H A   G   VVK L +   K                     +  T LH AV   
Sbjct: 72  GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI-------------TNQGVTCLHLAVGKK 118

Query: 138 NLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCSSAAHD--- 189
             +  + L+E G      A+V       + PL+ AA+ GS K++ E+L  C         
Sbjct: 119 WFEVSQFLIENG------ASVRIKDKFNQIPLHRAASVGSLKLI-ELL--CGLGKSAVNW 169

Query: 190 -GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
               G T L  A+     D    L+ K        D+ G      +     + +    L 
Sbjct: 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 77.9 bits (193), Expect = 1e-16
 Identities = 32/155 (20%), Positives = 46/155 (29%), Gaps = 46/155 (29%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEE 126
           N     G + LH A       V + LIE       K                    ++  
Sbjct: 101 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK--------------------DKFN 140

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV--------AE 178
              LH A   G+L  +++L   G +     +  G TPL+ A A G             AE
Sbjct: 141 QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200

Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLL 213
                +        G  A   A+N     V +  L
Sbjct: 201 YDLVDN-------KGAKAEDVALNE---QVKKFFL 225

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  110 bits (277), Expect = 1e-27
 Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 32/236 (13%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
             +     SPLHAAA+ G   +  +L++                       +E++ T L 
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQ---------AGANIDT------CSEDQRTPLM 49

Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD-- 189
           EA +  +L+AVK L++AG       +  G T L++AA +G  + V + L   S+   D  
Sbjct: 50  EAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYE-VVQYL--LSNGQMDVN 105

Query: 190 --GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL 247
                G T +  A      D+V+ LL+K   +   RD+     LH +A+ G  DI  +LL
Sbjct: 106 CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENICLHWAAFSGCVDIAEILL 164

Query: 248 EFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHF 302
                   +   +    + L +AA +         ++   +   L +  G   L  
Sbjct: 165 AAK---CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  109 bits (276), Expect = 1e-27
 Identities = 49/212 (23%), Positives = 77/212 (36%), Gaps = 39/212 (18%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
           +       +PL  AA+      VK LI+  A           K         + E +T L
Sbjct: 38  DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-------PK---------DAEGSTCL 81

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV-------AEILEKC 183
           H A + G+ + V+ L+  G       +  G TP+  A       +V       ++I  + 
Sbjct: 82  HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD 141

Query: 184 SSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDIT 243
           +            LH A  S   D+ E LLA K  L    +  G +PLH +A     D  
Sbjct: 142 N-------EENICLHWAAFSGCVDIAEILLAAKCDLH-AVNIHGDSPLHIAARENRYDCV 193

Query: 244 ALLLEFDGSSALILDKDRK-MTALLMAASQGH 274
            L L  D   + +  K+++  T L  A+    
Sbjct: 194 VLFLSRD---SDVTLKNKEGETPLQCASLNSQ 222

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  107 bits (270), Expect = 9e-27
 Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 7/216 (3%)

Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK 182
           ++ + + LH A + G++D   +L++AG N   + + +  TPL  AA     + V  +++ 
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66

Query: 183 CSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDI 242
            +        G T LH A      +VV+ LL+  +     +DD GWTP+  +      D+
Sbjct: 67  GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL 126

Query: 243 TALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHF 302
             LLL   GS   I D +     L  AA  G   +A  ++A   +    V+  G + LH 
Sbjct: 127 VKLLLS-KGSDINIRDNEEN-ICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHI 183

Query: 303 LMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                    +   L      S +  KN+ G TPL  
Sbjct: 184 AARENRYDCVVLFLS---RDSDVTLKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 95.9 bits (240), Expect = 1e-22
 Identities = 36/182 (19%), Positives = 66/182 (36%), Gaps = 29/182 (15%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
           + K   G + LH AAK G   VV+ L+   +                    ++   T + 
Sbjct: 71  DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC--------------QDDGGWTPMI 116

Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCSSA 186
            A +  ++D VK+L+  G      +++N         L+ AA  G   +   +L      
Sbjct: 117 WATEYKHVDLVKLLLSKG------SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170

Query: 187 AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
                +G + LH A      D V   L++   +T  ++  G TPL  ++          +
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT-LKNKEGETPLQCASLNSQVWSALQM 229

Query: 247 LE 248
            +
Sbjct: 230 SK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 78.2 bits (194), Expect = 1e-16
 Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 35/152 (23%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
           N +   G +P+  A +     +VK+L+   +           +         + EEN  L
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-------IR---------DNEENICL 148

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV-------AEILEKC 183
           H A   G +D  +IL+ A  +  ++ N++G++PL++AA       V       +++  K 
Sbjct: 149 HWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK- 206

Query: 184 SSAAHDGPNGKTALHAAVNSYAADVVEKLLAK 215
                +   G+T L  A  +       ++   
Sbjct: 207 -----NK-EGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.0 bits (157), Expect = 1e-11
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 19/116 (16%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
           N +    +  LH AA  G   + ++L+            C   A       N   ++ LH
Sbjct: 138 NIRDNEENICLHWAAFSGCVDIAEILLA---------AKCDLHA------VNIHGDSPLH 182

Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
            A +    D V + +    +     N  GETPL  A+         ++ +    +A
Sbjct: 183 IAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  107 bits (270), Expect = 5e-27
 Identities = 41/217 (18%), Positives = 64/217 (29%), Gaps = 49/217 (22%)

Query: 71  LIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
           +I      D+        GR  ++       +                     E  +  L
Sbjct: 38  IIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ--------------------AESIDNPL 77

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCSS 185
           HEA + GNL  ++  ++          VN     G T LY A   G K  + E+L     
Sbjct: 78  HEAAKRGNLSWLRECLDNR------VGVNGLDKAGSTALYWACHGGHKD-IVEML----- 125

Query: 186 AAHDGPN-------GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
                         G TALHAA     AD+V+ LLAK       R+         +    
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATNAA 184

Query: 239 LKDITALLLEFDGSSALILDKDRK-MTALLMAASQGH 274
              +       D   A+    + +       +  + H
Sbjct: 185 CASLLKKKQGTD---AVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 98.9 bits (247), Expect = 7e-24
 Identities = 31/213 (14%), Positives = 63/213 (29%), Gaps = 14/213 (6%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA 186
              +  A+          L     +         +T  +   ++G   ++       +  
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKGRTGLI-----PSNYV 66

Query: 187 AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
           A    +    LH A        + + L  +  +    D  G T L+ + + G KDI  +L
Sbjct: 67  AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEML 125

Query: 247 LEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMV 305
                    +  +++   TAL  AA +G+  +   ++A      DL +            
Sbjct: 126 FTQPN--IELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATN 182

Query: 306 SLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           +   S LK+        +     N         
Sbjct: 183 AACASLLKKKQG---TDAVRTLSNAEDYLDDED 212

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 86.1 bits (214), Expect = 2e-19
 Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 11/186 (5%)

Query: 153 PYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKL 212
           P      G+  ++ A      +   E+  +     +      T      +     ++   
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 213 LAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQ 272
              +      + +    PLH +A  G        L+        LDK    TAL  A   
Sbjct: 65  YVAE------QAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGS-TALYWACHG 116

Query: 273 GHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMG 332
           GH+ +   +        +  +  G   LH      +   ++ LL      +  D +N   
Sbjct: 117 GHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA---KGARTDLRNIEK 173

Query: 333 NTPLHI 338
                +
Sbjct: 174 KLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.7 bits (174), Expect = 3e-14
 Identities = 27/199 (13%), Positives = 52/199 (26%), Gaps = 37/199 (18%)

Query: 5   LYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQIL 64
            ++  + G                    +    LH   A  + +               L
Sbjct: 49  WWKGTSKGRTGLIPSNYVAE-----QAESIDNPLH--EA--AKRGNL----------SWL 89

Query: 65  EICPSLLIQTNAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGL 121
             C    +  N     G + L+ A   G   +V++L      +                 
Sbjct: 90  RECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-------------- 135

Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE 181
            N+  +TALH A   G  D V++L+  G       N+  +    MA       ++ +   
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQG 194

Query: 182 KCSSAAHDGPNGKTALHAA 200
             +               +
Sbjct: 195 TDAVRTLSNAEDYLDDEDS 213

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  109 bits (274), Expect = 1e-26
 Identities = 49/269 (18%), Positives = 84/269 (31%), Gaps = 72/269 (26%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEENTA 129
           N  G + LH A       +VK L+E                            + E    
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVENGANINQP--------------------DNEGWIP 109

Query: 130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD 189
           LH A  CG LD  + L+  G +   + N  G+TPL +A     ++++   + +       
Sbjct: 110 LHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNR------Q 162

Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
           G + + A          D  + L +   +        G T LH +A  G  ++  LL++ 
Sbjct: 163 GVDIEAARKEEERIMLRDARQWLNSGHIND-VRHAKSGGTALHVAAAKGYTEVLKLLIQA 221

Query: 250 DGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHE 309
                 I D D   T L  AA  G E     ++ +             +           
Sbjct: 222 -RYDVNIKDYDGW-TPLHAAAHWGKEEACRILVEN-----------LCD----------- 257

Query: 310 SKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                          ++  N++G T   +
Sbjct: 258 ---------------MEAVNKVGQTAFDV 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 94.1 bits (235), Expect = 2e-21
 Identities = 37/222 (16%), Positives = 73/222 (32%), Gaps = 23/222 (10%)

Query: 121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN----GETPLYMAAARGSKKMV 176
           + + ++          G+   ++  +                        A + G  + V
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKR------KKTKVKFDDGAVFLAACSSGDTEEV 56

Query: 177 AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY 236
             +LE+ +   +   +G TALH A      D+V+ L+    ++  + D+ GW PLH +A 
Sbjct: 57  LRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAAS 115

Query: 237 LGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGG 296
            G  DI   L+   G+    ++ +   T L +A  +  E L    +       +      
Sbjct: 116 CGYLDIAEYLIS-QGAHVGAVNSEGD-TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEE 173

Query: 297 WNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
             ++         S                   + G T LH+
Sbjct: 174 ERIMLRDARQWLNSG----------HINDVRHAKSGGTALHV 205

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 92.9 bits (232), Expect = 3e-21
 Identities = 45/218 (20%), Positives = 75/218 (34%), Gaps = 38/218 (17%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIE----FAKKQPTAMKCCAKTAWQMLGLTNEEEN 127
           N     G  PLHAAA CG   + + LI                            N E +
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV-------------------NSEGD 140

Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
           T L  A +    + ++  +           V+ E           +     +     +  
Sbjct: 141 TPLDIAEEEAMEELLQNEVNRQ-------GVDIEAARKEEERIMLRDARQWLNSGHINDV 193

Query: 188 HDGPNGKTALH-AAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
               +G TALH AA   Y  +V++ L+  +  +   +D  GWTPLH +A+ G ++   +L
Sbjct: 194 RHAKSGGTALHVAAAKGY-TEVLKLLIQARYDVN-IKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 247 LEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAH 284
           +E        ++K  + TA  +A       L       
Sbjct: 252 VEN-LCDMEAVNKVGQ-TAFDVADEDILGYLEELQKKQ 287

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 88.3 bits (220), Expect = 1e-19
 Identities = 38/215 (17%), Positives = 70/215 (32%), Gaps = 48/215 (22%)

Query: 64  LEICPSLLIQ-------TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAW 116
           L+I    LI         N++GD+PL  A +     +++  +                  
Sbjct: 119 LDIA-EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI----------- 166

Query: 117 QMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV 176
                       A  E  +    DA + L     N       +G T L++AAA+G  +++
Sbjct: 167 ----------EAARKEEERIMLRDARQWLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVL 215

Query: 177 -------AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWT 229
                   ++  K         +G T LHAA +    +    L+     +    +  G T
Sbjct: 216 KLLIQARYDVNIKDY-------DGWTPLHAAAHWGKEEACRILVENLCDME-AVNKVGQT 267

Query: 230 PLHHSAYLGLKDITALLLEFDGSSALILDKDRKMT 264
               +    L  +  L  + +    L  +K  K +
Sbjct: 268 AFDVADEDILGYLEELQKKQN---LLHSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 20/150 (13%)

Query: 221 RERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGT 280
           +  D           ++G +      +           K       L A S G       
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVV---KRKKTKVKFDDGAVFLAACSSGDTEEVLR 58

Query: 281 IIAHYPECYDLVDNGGWNVLHFLMVSLHESK--LKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           ++    +  +  +  G   LH     + ++   +K L++     + I++ +  G  PLH 
Sbjct: 59  LLERGADI-NYANVDGLTALHQ--ACIDDNVDMVKFLVE---NGANINQPDNEGWIPLHA 112

Query: 339 LATLSARTCN--EIVRQ-IGKG-DTQAVNK 364
                A +C   +I    I +G    AVN 
Sbjct: 113 -----AASCGYLDIAEYLISQGAHVGAVNS 137

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  106 bits (267), Expect = 3e-26
 Identities = 60/286 (20%), Positives = 94/286 (32%), Gaps = 82/286 (28%)

Query: 75  NAK---GDSPLHAAAKCG-------------RPAVVKVLIEF-AKKQPTAMKCCAKTAWQ 117
           N +   G +PL  A+  G              PAV+   I   A                
Sbjct: 4   NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ----------- 52

Query: 118 MLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVA 177
               T+    TALH A +    DA K L+EA  +     +  G TPL+ A +  ++  V 
Sbjct: 53  ----TDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQG-VF 106

Query: 178 EILEKCSSAAHD----GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHH 233
           +IL    + A D      +G T L  A       ++E L+     +    DD G + LH 
Sbjct: 107 QIL--IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHW 163

Query: 234 SAYLGLKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLV 292
           +A +   D   +LL+     A    ++ +  T L +AA +G    A  ++ H+       
Sbjct: 164 AAAVNNVDAAVVLLKNG---ANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN----- 215

Query: 293 DNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                                            D  + M   P  I
Sbjct: 216 --------------------------------RDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 96.4 bits (241), Expect = 9e-23
 Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 43/189 (22%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
           N +   G +PLHAA       V ++LI        A                 +  T L 
Sbjct: 84  NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA--------------RMHDGTTPLI 129

Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV-------AEI 179
            A +      ++ L+ +       A+VN     G++ L+ AAA  +           A  
Sbjct: 130 LAARLAVEGMLEDLINSH------ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183

Query: 180 LEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGL 239
             + +         +T L  A    + +  + LL    +     D     P   +     
Sbjct: 184 DMQNN-------REETPLFLAAREGSYETAKVLLDHFANRD-ITDHMDRLPRDIAQERMH 235

Query: 240 KDITALLLE 248
            DI  LL  
Sbjct: 236 HDIVRLLDL 244

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 76.0 bits (188), Expect = 1e-15
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 43/156 (27%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
           +A+   G +PL  AA+     +++ LI             A      +   ++   +ALH
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLIN----------SHAD-----VNAVDDLGKSALH 162

Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV-------AEI 179
            A    N+DA  +L++ G      AN +      ETPL++AA  GS +         A  
Sbjct: 163 WAAAVNNVDAAVVLLKNG------ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 216

Query: 180 LEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAK 215
                         +     A      D+V  L  +
Sbjct: 217 DIT-------DHMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 17/78 (21%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIE-FAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
           N + ++PL  AA+ G     KVL++ FA                   +T+  +      A
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFAN----------------RDITDHMDRLPRDIA 230

Query: 134 VQCGNLDAVKILMEAGPN 151
            +  + D V++L     +
Sbjct: 231 QERMHHDIVRLLDLEHHH 248

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  104 bits (263), Expect = 3e-26
 Identities = 48/225 (21%), Positives = 83/225 (36%), Gaps = 42/225 (18%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV 134
             +  + L AA +     V ++L +                       + E NT L+ AV
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQD---------TTYQVDE------VDTEGNTPLNIAV 47

Query: 135 QCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCSSAAHD 189
              +++  K L++ G      A++N      ++P   A A+G  + +   +     A  D
Sbjct: 48  HNNDIEIAKALIDRG------ADINLQNSISDSPYLYAGAQGRTE-ILAYM--LKHATPD 98

Query: 190 ----GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYL-----GLK 240
                  G  AL  A      D V+ LL   R     ++D G+T L  +  L       +
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158

Query: 241 DITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAH 284
           DI  LL+E     A    KD    TA+  A  +G+  ++  +  +
Sbjct: 159 DIVKLLMENG---ADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 96.0 bits (240), Expect = 5e-23
 Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 31/188 (16%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
           +     G++PL+ A       + K LI+  A           +         N   ++  
Sbjct: 33  DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-------LQ---------NSISDSPY 76

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA---A 187
             A   G  + +  +++         N  G   L  AA +G      ++L +        
Sbjct: 77  LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID-NVKLLLEDGREDIDF 135

Query: 188 HDGPNGKTALHAAVNSYAA-----DVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDI 242
            +   G TAL  AV          D+V+ L+      +  +D+ G T + ++   G  +I
Sbjct: 136 QND-FGYTALIEAVGLREGNQLYQDIVKLLMENGADQS-IKDNSGRTAMDYANQKGYTEI 193

Query: 243 TALLLEFD 250
           + +L +++
Sbjct: 194 SKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 89.4 bits (223), Expect = 9e-21
 Identities = 37/224 (16%), Positives = 62/224 (27%), Gaps = 50/224 (22%)

Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV------ 176
             E    L  A Q       +IL +         +  G TPL +A      ++       
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 177 -AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSA 235
            A+I  + S          +    A      +++  +L        + +  G   L  +A
Sbjct: 62  GADINLQNS-------ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA 114

Query: 236 YLGLKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDN 294
             G  D   LLLE       I  ++    TAL+ A      +     I        L++N
Sbjct: 115 EKGHIDNVKLLLEDG--REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL-----LMEN 167

Query: 295 GGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           G                           +    K+  G T +  
Sbjct: 168 G---------------------------ADQSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 67.5 bits (166), Expect = 3e-13
 Identities = 38/168 (22%), Positives = 60/168 (35%), Gaps = 17/168 (10%)

Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG 251
                L AA       V E L      +  E D  G TPL+ + +    +I   L++   
Sbjct: 5   EVGALLEAANQRDTKKVKEILQDTTYQVD-EVDTEGNTPLNIAVHNNDIEIAKALIDRG- 62

Query: 252 SSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHES 310
             A I  ++    +  L A +QG   +   ++ H     +  +  G N L       H  
Sbjct: 63  --ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120

Query: 311 KLKRLLK----DPLYKSFIDEKNEMGNTPLHILATLSARTCN--EIVR 352
            +K LL+    D      ID +N+ G T L     L        +IV+
Sbjct: 121 NVKLLLEDGRED------IDFQNDFGYTALIEAVGLREGNQLYQDIVK 162

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  104 bits (263), Expect = 6e-26
 Identities = 46/239 (19%), Positives = 77/239 (32%), Gaps = 54/239 (22%)

Query: 78  GDSPLHAAAKCGR-PAVVKVLIE-----FAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
            +SPL  AAK     A+ K+L         +                         TALH
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQR--------------------GAMGETALH 42

Query: 132 EAVQCGNLDAVKILMEAGPNFPY----SANVNGETPLYMAAARGSKKMV-------AEIL 180
            A    NL+A  +LMEA P   +    S    G+T L++A    +  +V       A + 
Sbjct: 43  IAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVS 102

Query: 181 EKC------SSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS 234
            +           +    G+  L  A    + ++V  L+     + R +D  G T LH  
Sbjct: 103 ARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHIL 161

Query: 235 AYLGLKDITALLLEF---------DGSSALILDKDRKMTALLMAASQGHESLAGTIIAH 284
                K     +              S  L+ +     T   +A  +G+  +   ++  
Sbjct: 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL-TPFKLAGVEGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 88.8 bits (221), Expect = 2e-20
 Identities = 49/237 (20%), Positives = 84/237 (35%), Gaps = 64/237 (27%)

Query: 128 TALHEAVQCGNLDAV-KILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV----- 176
           + L  A +  ++ A+ K+L   G        V+     GET L++AA   + +       
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEG------CEVHQRGAMGETALHIAALYDNLEAAMVLME 58

Query: 177 --AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAK------------KRHLTRE 222
              E++ +  ++      G+TALH AV +   ++V  LLA+              +    
Sbjct: 59  AAPELVFEPMTSELY--EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHN 116

Query: 223 RDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTI 281
               G  PL  +A +G ++I  LL+E     A I  +D    T L +   Q +++ A  +
Sbjct: 117 LIYYGEHPLSFAACVGSEEIVRLLIE---HGADIRAQDSLGNTVLHILILQPNKTFACQM 173

Query: 282 IAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                    L+   G                         KS     N  G TP  +
Sbjct: 174 YNL------LLSYDG---------------------GDHLKSLELVPNNQGLTPFKL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 82.7 bits (205), Expect = 4e-18
 Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 54/190 (28%)

Query: 74  TNAK---GDSPLHAAAKCGRPAVVKVLI-------EFAKKQPTAMKCCAKTAWQMLGLTN 123
             ++   G + LH A       +V+ L+         A       +              
Sbjct: 68  MTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL---------I 118

Query: 124 EEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAE 178
                 L  A   G+ + V++L+E G      A++      G T L++   + +K    +
Sbjct: 119 YYGEHPLSFAACVGSEEIVRLLIEHG------ADIRAQDSLGNTVLHILILQPNKTFACQ 172

Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
           +                       SY      K       L    ++ G TP   +   G
Sbjct: 173 MYNLLL------------------SYDGGDHLK------SLELVPNNQGLTPFKLAGVEG 208

Query: 239 LKDITALLLE 248
              +   L++
Sbjct: 209 NIVMFQHLMQ 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  104 bits (263), Expect = 6e-26
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 37/235 (15%)

Query: 63  ILEICPSLLIQ----TNAK---GDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKC 110
              +    + Q     N     G++ LH AA+  R    K L+E       +        
Sbjct: 3   APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-------- 54

Query: 111 CAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAAR 170
                       +    T LH AV        +IL+        +   +G TPL +AA  
Sbjct: 55  ------------DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 102

Query: 171 GSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTP 230
             + M+ +++   +        GK+ALH A      D    LL    +    +++   TP
Sbjct: 103 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETP 161

Query: 231 LHHSAYLGLKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAH 284
           L  +A  G  +   +LL+     A     D        +A  + H  +   +  +
Sbjct: 162 LFLAAREGSYETAKVLLDHF---ANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  100 bits (253), Expect = 1e-24
 Identities = 50/222 (22%), Positives = 80/222 (36%), Gaps = 50/222 (22%)

Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE 181
           T+    TALH A +    DA K L+EA  +     +  G TPL+ A +  ++  V +IL 
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQG-VFQIL- 77

Query: 182 KCSSAAHD----GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYL 237
              + A D      +G T L  A       ++E L+     +    DD G + LH +A +
Sbjct: 78  -IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAV 135

Query: 238 GLKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGG 296
              D   +LL+   + A    ++ +  T L +AA +G    A  ++ H            
Sbjct: 136 NNVDAAVVLLK---NGANKDMQNNREETPLFLAAREGSYETAKVLLDH-----------F 181

Query: 297 WNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
            N                           D  + M   P  I
Sbjct: 182 AN--------------------------RDITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 67.0 bits (165), Expect = 6e-13
 Identities = 27/137 (19%), Positives = 40/137 (29%), Gaps = 46/137 (33%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEE 126
           NA    G S LH AA         VL++       +                    N  E
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ--------------------NNRE 158

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILE 181
            T L  A + G+ +  K+L++        AN +        P  +A  R    +V  + E
Sbjct: 159 ETPLFLAAREGSYETAKVLLDHF------ANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212

Query: 182 KCSSAAHDGPNGKTALH 198
                          LH
Sbjct: 213 Y-------NLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 58.2 bits (142), Expect = 7e-10
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 5/132 (3%)

Query: 207 DVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTAL 266
            V+   + +   L  + D  G T LH +A     D    LLE   + A I D   + T L
Sbjct: 5   AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGR-TPL 62

Query: 267 LMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFID 326
             A S   + +   +I +     D   + G   L        E  L+ L+      + ++
Sbjct: 63  HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN---SHADVN 119

Query: 327 EKNEMGNTPLHI 338
             +++G + LH 
Sbjct: 120 AVDDLGKSALHW 131

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  105 bits (264), Expect = 2e-25
 Identities = 47/304 (15%), Positives = 93/304 (30%), Gaps = 60/304 (19%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEEN-TALHE 132
           +  G S  + A       +V  L+   A K                   N  EN   LH+
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNAGALK-------------------NLLENEFPLHQ 68

Query: 133 AVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV-------AEILEKCSS 185
           A    +   VKIL+ +G +     +  G T LY A   G+ + V         ++     
Sbjct: 69  AATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY--- 124

Query: 186 AAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITAL 245
               G   KT+ + AV      +V   L++    +        + +H +   G  D+  L
Sbjct: 125 -GKTG--WKTSFYHAVMLNDVSIVSYFLSEIP--STFDLAILLSCIHITIKNGHVDMMIL 179

Query: 246 LLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNV---LHF 302
           LL+   +S    +    +  + +A       +   +  +             N+      
Sbjct: 180 LLD-YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-----------DINIYSANLE 227

Query: 303 LMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAV 362
            ++       K +++           +   +  +           +EI+ +  +     V
Sbjct: 228 NVLLDDAEIAKMIIE---KHVEYKSDSYTKDLDIVK-----NNKLDEIISKNKELRLMYV 279

Query: 363 NKKK 366
           N  K
Sbjct: 280 NCVK 283

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 89.1 bits (222), Expect = 5e-20
 Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 13/209 (6%)

Query: 133 AVQCGNLDAVKILME-AGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP 191
            +       +K  +          A+V+G +  Y A A  + ++V  +L     A  +  
Sbjct: 6   RINTWKSKQLKSFLSSKDTF---KADVHGHSASYYAIADNNVRLVCTLLNA--GALKNLL 60

Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG 251
             +  LH A       +V+ LL      + + DD G T L+++   G      L ++   
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVK-KN 118

Query: 252 SSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESK 311
              +   K    T+   A      S+    ++  P           + +H  + + H   
Sbjct: 119 WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS--TFDLAILLSCIHITIKNGHVDM 176

Query: 312 LKRLLKDPLYKSFIDEKNEMGNTPLHILA 340
           +  LL    Y +  +  N +   P   LA
Sbjct: 177 MILLLD---YMTSTNTNNSLLFIPDIKLA 202

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 17/155 (10%), Positives = 46/155 (29%), Gaps = 28/155 (18%)

Query: 72  IQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
               A   S +H   K G   ++ +L++            +      L          + 
Sbjct: 155 TFDLAILLSCIHITIKNGHVDMMILLLD---------YMTSTNTNNSLLFI-----PDIK 200

Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP 191
            A+   +++ ++ L +         N+   +           ++   I+EK      D  
Sbjct: 201 LAIDNKDIEMLQALFKYD------INIY--SANLENVLLDDAEIAKMIIEKHVEYKSDSY 252

Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDC 226
                +           ++++++K + L     +C
Sbjct: 253 TKDLDIVKNNK------LDEIISKNKELRLMYVNC 281

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.0 bits (136), Expect = 7e-09
 Identities = 21/147 (14%), Positives = 50/147 (34%), Gaps = 13/147 (8%)

Query: 193 GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGS 252
           G        N++ +  ++  L+     T + D  G +  +++       +   LL    +
Sbjct: 1   GMDLSRI--NTWKSKQLKSFLSS--KDTFKADVHGHSASYYAIADNNVRLVCTLLN---A 53

Query: 253 SALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKL 312
            AL    +     L  AA+     +   ++    +     D+ G   L++ + S +   +
Sbjct: 54  GALKNLLE-NEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTV 111

Query: 313 KRLLKDPLYKSFIDEKNEMG-NTPLHI 338
           K  +K       +    + G  T  + 
Sbjct: 112 KLFVK---KNWRLMFYGKTGWKTSFYH 135

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  103 bits (259), Expect = 2e-25
 Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 30/230 (13%)

Query: 78  GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
                + A       + + ++               T       T+++  TALH A   G
Sbjct: 7   NIMICNLAYSGKLDELKERILA---------DKSLATR------TDQDSRTALHWACSAG 51

Query: 138 NLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCSSAAHDGPN 192
           + + V+ L++ G        VN     G +PL++AA+ G  ++V  +L K +       N
Sbjct: 52  HTEIVEFLLQLG------VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN 105

Query: 193 GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGS 252
           G T LH A +    ++   LL    +    +D    T +H +A  G   +  +LL    +
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGNLKMVHILLF-YKA 163

Query: 253 SALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHF 302
           S  I D +   T L +A  +     A  ++        + +      L  
Sbjct: 164 STNIQDTEGN-TPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQV 211

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =   99 bits (249), Expect = 4e-24
 Identities = 45/237 (18%), Positives = 90/237 (37%), Gaps = 37/237 (15%)

Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV------ 176
              + A      +  + ++         +          T L+ A + G  ++V      
Sbjct: 9   MICNLAYSGKLDELKERILADK------SLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 177 -AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSA 235
              + +K          G + LH A ++   ++V+ LL K  H+    +  G TPLH++A
Sbjct: 63  GVPVNDK-------DDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAA 114

Query: 236 YLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNG 295
                +I  +LLE  G++    D     TA+  AA++G+  +   ++ +     ++ D  
Sbjct: 115 SKNRHEIAVMLLEG-GANPDAKDHYDA-TAMHRAAAKGNLKMVHILLFYKAST-NIQDTE 171

Query: 296 GWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVR 352
           G   LH         + K L+      + I  +N+   TPL +     A+    ++ 
Sbjct: 172 GNTPLHLACDEERVEEAKFLVT---QGASIYIENKEEKTPLQV-----AKGGLGLIL 220

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 88.0 bits (218), Expect = 6e-20
 Identities = 46/207 (22%), Positives = 77/207 (37%), Gaps = 30/207 (14%)

Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEENT 128
           T+    + LH A   G   +V+ L++       K                    ++   +
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--------------------DDAGWS 75

Query: 129 ALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAH 188
            LH A   G  + VK L+  G +   + N NG TPL+ AA++   ++   +LE  ++   
Sbjct: 76  PLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134

Query: 189 DGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
                 TA+H A       +V  LL  K      +D  G TPLH +      +    L+ 
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTN-IQDTEGNTPLHLACDEERVEEAKFLVT 193

Query: 249 FDGSSALILDKDRKMTALLMAASQGHE 275
                A I  ++++    L  A  G  
Sbjct: 194 ---QGASIYIENKEEKTPLQVAKGGLG 217

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 81.5 bits (201), Expect = 1e-17
 Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 8/216 (3%)

Query: 157 NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKK 216
            V+      +A +    ++   IL   S A     + +TALH A ++   ++VE LL   
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63

Query: 217 RHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHES 276
             +  ++DD GW+PLH +A  G  +I   LL   G+    ++++   T L  AAS+    
Sbjct: 64  VPVN-DKDDAGWSPLHIAASAGXDEIVKALLV-KGAHVNAVNQNGC-TPLHYAASKNRHE 120

Query: 277 LAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPL 336
           +A  ++       D  D+     +H      +   +  LL    YK+  + ++  GNTPL
Sbjct: 121 IAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLF---YKASTNIQDTEGNTPL 176

Query: 337 HILATLSARTCNEIVRQIGKGDTQAVNKKKISVKHI 372
           H+          + +   G       NK++ +   +
Sbjct: 177 HLACDEERVEEAKFLVTQG-ASIYIENKEEKTPLQV 211

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 73.0 bits (179), Expect = 7e-15
 Identities = 37/202 (18%), Positives = 65/202 (32%), Gaps = 16/202 (7%)

Query: 180 LEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGL 239
           +E C        +     + A +    ++ E++LA K   T   D    T LH +   G 
Sbjct: 1   MEGCV-------SNIMICNLAYSGKLDELKERILADKSLAT-RTDQDSRTALHWACSAGH 52

Query: 240 KDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWN 298
            +I   LL+       + DKD    + L +AAS G + +   ++       + V+  G  
Sbjct: 53  TEIVEFLLQLG---VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCT 108

Query: 299 VLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGD 358
            LH+            LL+     +  D K+    T +H  A         I+       
Sbjct: 109 PLHYAASKNRHEIAVMLLE---GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165

Query: 359 TQAVNKKKISVKHIELYGCPEL 380
                +    +         E 
Sbjct: 166 NIQDTEGNTPLHLACDEERVEE 187

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 62.6 bits (152), Expect = 3e-11
 Identities = 38/162 (23%), Positives = 59/162 (36%), Gaps = 24/162 (14%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEFA-------KKQPTAMKCCAKTAWQM------ 118
           N K   G SPLH AA  G   +VK L+          +   T +   A            
Sbjct: 67  NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126

Query: 119 -----LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSK 173
                    +  + TA+H A   GNL  V IL+    +     +  G TPL++A      
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERV 185

Query: 174 KMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAK 215
           +    ++ + +S   +    KT L  A       ++ K LA+
Sbjct: 186 EEAKFLVTQGASIYIENKEEKTPLQVAKGGL--GLILKRLAE 225

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  100 bits (253), Expect = 4e-25
 Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 9/161 (5%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA 186
           + ++H+    G LD +K  +  G N     +  G TPL  A+A G  + V  +LE  +  
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 187 AHDGPNGKTALHAAVNSYAADVVEKLL---AKKRHLTRERDDCGWTPLHHSAYLGLKDIT 243
                  ++AL  A      D+V  LL             D  G TPL ++         
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLLERDVDI----NIYDWNGGTPLLYAVRGNHVKCV 118

Query: 244 ALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAH 284
             LL   G+           T + +A + G+  +   I  H
Sbjct: 119 EALLA-RGADLTTEADSG-YTPMDLAVALGYRKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 95.9 bits (240), Expect = 2e-23
 Identities = 41/179 (22%), Positives = 64/179 (35%), Gaps = 31/179 (17%)

Query: 78  GDS-PLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC 136
           GDS  +H  A  G    +K  +                        +E   T L  A   
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNK--------------PDERGFTPLIWASAF 46

Query: 137 GNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEIL-------EKCSSAAHD 189
           G ++ V+ L+E G + P+      E+ L +A+  G    +  +L                
Sbjct: 47  GEIETVRFLLEWGAD-PHILAKERESALSLASTGGYTD-IVGLLLERDVDINIYDW---- 100

Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
             NG T L  AV       VE LLA+   LT    D G+TP+  +  LG + +  ++  
Sbjct: 101 --NGGTPLLYAVRGNHVKCVEALLARGADLT-TEADSGYTPMDLAVALGYRKVQQVIEN 156

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 85.5 bits (213), Expect = 1e-19
 Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 19/158 (12%)

Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALHE 132
            + +G +PL  A+  G    V+ L+E+ A                      +E  +AL  
Sbjct: 32  PDERGFTPLIWASAFGEIETVRFLLEWGADPH-------IL---------AKERESALSL 75

Query: 133 AVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPN 192
           A   G  D V +L+E   +     + NG TPL  A      K V  +L + +    +  +
Sbjct: 76  ASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADS 134

Query: 193 GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTP 230
           G T +  AV      V + +      L  + +     P
Sbjct: 135 GYTPMDLAVALGYRKVQQVIENHILKLF-QSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 69.8 bits (172), Expect = 3e-14
 Identities = 32/181 (17%), Positives = 56/181 (30%), Gaps = 16/181 (8%)

Query: 160 GETPLYMAAARGSKKMVAEILEK-CSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH 218
               ++  AA+G    + E L K  +        G T L  A      + V  LL     
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 219 LTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK----MTALLMAASQGH 274
                     + L  ++  G  DI  LLLE D       D +       T LL A    H
Sbjct: 62  PH-ILAKERESALSLASTGGYTDIVGLLLERDV------DINIYDWNGGTPLLYAVRGNH 114

Query: 275 ESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNT 334
                 ++A   +      + G+  +   +   +    + +     +   + + N +   
Sbjct: 115 VKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIEN---HILKLFQSNLVPAD 170

Query: 335 P 335
           P
Sbjct: 171 P 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 53.6 bits (130), Expect = 1e-08
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 25/102 (24%)

Query: 70  LLIQTNAK-------GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGL 121
           LL++ +         G +PL  A +      V+ L+   A                    
Sbjct: 87  LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT----------------T 130

Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETP 163
             +   T +  AV  G     +++        + +N+    P
Sbjct: 131 EADSGYTPMDLAVALGYRKVQQVIENHILK-LFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 5/112 (4%)

Query: 227 GWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYP 286
               +H  A  G  D     L    +     D+    T L+ A++ G       ++    
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDER-GFTPLIWASAFGEIETVRFLLEWGA 60

Query: 287 ECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           +   ++     + L       +   +  LL+       I+  +  G TPL  
Sbjct: 61  DP-HILAKERESALSLASTGGYTDIVGLLLE---RDVDINIYDWNGGTPLLY 108

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  100 bits (252), Expect = 5e-25
 Identities = 46/194 (23%), Positives = 74/194 (38%), Gaps = 43/194 (22%)

Query: 70  LLIQTNAKGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENT 128
                 +     L  AA+ GR   V++L+   A          A+         +    T
Sbjct: 6   HHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVN-------AE---------DASGWT 49

Query: 129 ALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV------- 176
            LH A   G+L+ V++L++ G      A+VN     G TPL +AA  G  ++V       
Sbjct: 50  PLHLAAFNGHLEIVEVLLKNG------ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103

Query: 177 AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY 236
           A++             G T LH A      ++VE LL     +   +D  G T    S  
Sbjct: 104 ADVNANDM-------EGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISID 155

Query: 237 LGLKDITALLLEFD 250
            G +D+  +L + +
Sbjct: 156 NGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 93.2 bits (233), Expect = 2e-22
 Identities = 51/170 (30%), Positives = 72/170 (42%), Gaps = 28/170 (16%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV----- 176
              L EA + G  D V+ILM  G      A+VN     G TPL++AA  G  ++V     
Sbjct: 15  GKKLLEAARAGRDDEVRILMANG------ADVNAEDASGWTPLHLAAFNGHLEIVEVLLK 68

Query: 177 --AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS 234
             A++             G T L  A      ++VE LL     +    D  G TPLH +
Sbjct: 69  NGADVNAVDH-------AGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLA 120

Query: 235 AYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAH 284
           A  G  +I  +LL+  G+     DK  K TA  ++   G+E LA  +   
Sbjct: 121 AMFGHLEIVEVLLKN-GADVNAQDKFGK-TAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 68.5 bits (169), Expect = 7e-14
 Identities = 37/188 (19%), Positives = 64/188 (34%), Gaps = 56/188 (29%)

Query: 159 NGETPLYMAAARGSKKMV-------AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEK 211
           +    L  AA  G    V       A++  + +       +G T LH A  +   ++VE 
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNAEDA-------SGWTPLHLAAFNGHLEIVEV 65

Query: 212 LLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK-MTALLMAA 270
           LL     +    D  G TPL  +A  G  +I  +LL+     A +   D +  T L +AA
Sbjct: 66  LLKNGADVN-AVDHAGMTPLRLAALFGHLEIVEVLLKNG---ADVNANDMEGHTPLHLAA 121

Query: 271 SQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNE 330
             GH  +   ++ +           G +                          ++ +++
Sbjct: 122 MFGHLEIVEVLLKN-----------GAD--------------------------VNAQDK 144

Query: 331 MGNTPLHI 338
            G T   I
Sbjct: 145 FGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 55.1 bits (134), Expect = 4e-09
 Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 42/153 (27%)

Query: 187 AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
            H G +    L  A  +   D V  L+A    +    D  GWTPLH +A+ G  +I  +L
Sbjct: 8   HHHGSDLGKKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVL 66

Query: 247 LEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMV 305
           L+   + A +   D   MT L +AA  GH  +   ++ +           G +       
Sbjct: 67  LK---NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN-----------GAD------- 105

Query: 306 SLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                              ++  +  G+TPLH+
Sbjct: 106 -------------------VNANDMEGHTPLHL 119

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  100 bits (252), Expect = 7e-25
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 19/170 (11%)

Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV------ 176
           + E    +    + GN  AV++ ++   N     + +G +PL+ A   G   +V      
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 177 -AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSA 235
            A I               T LH A +    D+V+KLL  K  +    ++ G  PLH++ 
Sbjct: 62  GARINVM-------NRGDDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYAC 113

Query: 236 YLGLKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAH 284
           + G   +   L+      AL+   ++     +  A +   E L       
Sbjct: 114 FWGQDQVAEDLVANG---ALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 93.3 bits (233), Expect = 3e-22
 Identities = 30/183 (16%), Positives = 62/183 (33%), Gaps = 40/183 (21%)

Query: 78  GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
               +    + G    V++ ++  +                    ++   + LH A + G
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQ--------------GDDHGFSPLHWACREG 50

Query: 138 NLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV-------AEILEKCSS 185
               V++L+  G      A +N      +TPL++AA+ G + +V       A+I      
Sbjct: 51  RSAVVEMLIMRG------ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE- 103

Query: 186 AAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITAL 245
                 +G   LH A       V E L+A    ++   +  G  P+  +     + +   
Sbjct: 104 ------HGNVPLHYACFWGQDQVAEDLVANGALVS-ICNKYGEMPVDKAKAPLRELLRER 156

Query: 246 LLE 248
             +
Sbjct: 157 AEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 80.9 bits (201), Expect = 5e-18
 Identities = 34/152 (22%), Positives = 55/152 (36%), Gaps = 35/152 (23%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
           N     G SPLH A + GR AVV++LI   A+                    N  ++T L
Sbjct: 33  NQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-------VM---------NRGDDTPL 76

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV-------AEILEKC 183
           H A   G+ D V+ L++   +   + N +G  PL+ A   G  ++        A +    
Sbjct: 77  HLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135

Query: 184 SSAAHDGPNGKTALHAAVNSYAADVVEKLLAK 215
                    G+  +  A       + E+    
Sbjct: 136 K-------YGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 70.5 bits (174), Expect = 2e-14
 Identities = 35/188 (18%), Positives = 59/188 (31%), Gaps = 49/188 (26%)

Query: 156 ANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD----GPNGKTALHAAVNSYAADVVEK 211
            +      ++     G+   V   L    +  +D      +G + LH A     + VVE 
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWL---DNTENDLNQGDDHGFSPLHWACREGRSAVVEM 57

Query: 212 LLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK-MTALLMAA 270
           L+ +   +    +    TPLH +A  G +DI   LL++    A I   +      L  A 
Sbjct: 58  LIMRGARIN-VMNRGDDTPLHLAASHGHRDIVQKLLQYK---ADINAVNEHGNVPLHYAC 113

Query: 271 SQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNE 330
             G +      +A       LV NG                           + +   N+
Sbjct: 114 FWGQDQ-----VAED-----LVANG---------------------------ALVSICNK 136

Query: 331 MGNTPLHI 338
            G  P+  
Sbjct: 137 YGEMPVDK 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 53.6 bits (130), Expect = 1e-08
 Identities = 19/114 (16%), Positives = 31/114 (27%), Gaps = 39/114 (34%)

Query: 70  LLIQ----TNAK---GDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQ 117
            L+Q     NA    G+ PLH A   G+  V + L+                        
Sbjct: 90  KLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC--------------- 134

Query: 118 MLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARG 171
                N+     + +A         +   + G       N+N   P      +G
Sbjct: 135 -----NKYGEMPVDKAKAPLRELLRERAEKMG------QNLN-RIPYKDTFWKG 176

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  101 bits (253), Expect = 2e-24
 Identities = 43/276 (15%), Positives = 74/276 (26%), Gaps = 55/276 (19%)

Query: 73  QTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHE 132
           +T  +G        K G           A                       E  T    
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD------------------VVSEYETPWWT 51

Query: 133 AVQCGNLDAVKILME-AGPNFPYSANVNGETPLYMAAARGSKKMV-------AEILEKCS 184
           A +  +  A+  L+E    +   + + NG T L   A  GS K V       A++  +  
Sbjct: 52  AARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR-- 106

Query: 185 SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITA 244
               D   G TALH A      +VVE L+     +    D+ G T L  +  +       
Sbjct: 107 ----DMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILKTTPKG 161

Query: 245 LLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLM 304
             ++F      I  +   +  +L      +  +                  G +V + + 
Sbjct: 162 NPMQF---GRRIGLEK--VINVLEGQVFEYAEVD---------EIVEKRGKGKDVEYLVR 207

Query: 305 VSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILA 340
                           + +    K+      L    
Sbjct: 208 WKDGGDCEWVKGV---HVAEDVAKD--YEDGLEYAV 238

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 97.3 bits (243), Expect = 4e-23
 Identities = 40/234 (17%), Positives = 69/234 (29%), Gaps = 67/234 (28%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV 134
            ++ ++P   AA+      +  L+E            A          +E   TAL    
Sbjct: 42  VSEYETPWWTAARKADEQALSQLLEDRDV-------DAV---------DENGRTALLFVA 85

Query: 135 QCGNLDAVKILMEAGPNFPYSANVN------GETPLYMAAARGSKKMV-------AEILE 181
             G+   V++L EAG      A+++      G T L+MAA     ++V       A+I  
Sbjct: 86  GLGSDKCVRLLAEAG------ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 139

Query: 182 KCSSAAHDGPNGKTALHAAVNSYAADVVEKLL-----------------AKKRHLTR--- 221
           +      D   G TAL  A            +                     +      
Sbjct: 140 E------DE-RGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEI 192

Query: 222 -ERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGH 274
            E+   G    +   +    D   +        A  + KD +   L  A ++  
Sbjct: 193 VEKRGKGKDVEYLVRWKDGGDCEWVKGVHV---AEDVAKDYE-DGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 28/184 (15%), Positives = 52/184 (28%), Gaps = 39/184 (21%)

Query: 160 GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHL 219
           GE    + +    +                   G            +            +
Sbjct: 1   GEVNKIIGSRTAGE-------------------GAMEYLIEWKDGHSPSWVPSSYIAADV 41

Query: 220 TRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAG 279
                    TP   +A    +   + LLE        +D++ + TALL  A  G +    
Sbjct: 42  ----VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGR-TALLFVAGLGSDKCVR 94

Query: 280 TIIAH--YPECYDLVDNGGWNVLHFLMVSLHESKLKRLLK---DPLYKSFIDEKNEMGNT 334
            +       +  D    GG   LH     +    ++ L++   D      I+ ++E G T
Sbjct: 95  LLAEAGADLDHRD--MRGGLTALHMAAGYVRPEVVEALVELGAD------IEVEDERGLT 146

Query: 335 PLHI 338
            L +
Sbjct: 147 ALEL 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 98.0 bits (245), Expect = 7e-24
 Identities = 37/185 (20%), Positives = 57/185 (30%), Gaps = 36/185 (19%)

Query: 73  QTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHE 132
           +T  +G        K G           A                       E  T    
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD------------------VVSEYETPWWT 50

Query: 133 AVQCGNLDAVKILME-AGPNFPYSANVNGETPLYMAAARGSKKMV-------AEILEKCS 184
           A +  +  A+  L+E    +   + + NG T L   A  GS K V       A++  +  
Sbjct: 51  AARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR-- 105

Query: 185 SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITA 244
               D   G TALH A      +VVE L+     +    D+ G T L  +  +       
Sbjct: 106 ----DMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILKTTPKG 160

Query: 245 LLLEF 249
             ++F
Sbjct: 161 NPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 96.4 bits (241), Expect = 2e-23
 Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 7/163 (4%)

Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE 181
           T  E         + G+  +         +         ETP + AA +  ++ ++++LE
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQLLE 65

Query: 182 KCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKD 241
                A D  NG+TAL       +   V  L      L       G T LH +A     +
Sbjct: 66  DRDVDAVDE-NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 124

Query: 242 ITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAH 284
           +   L+E  G+   + D+    TAL +A      +  G  +  
Sbjct: 125 VVEALVEL-GADIEVEDERGL-TALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 90.2 bits (225), Expect = 3e-21
 Identities = 36/187 (19%), Positives = 60/187 (32%), Gaps = 60/187 (32%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV 134
            ++ ++P   AA+      +  L+E            A          +E   TAL    
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLEDRDV-------DAV---------DENGRTALLFVA 84

Query: 135 QCGNLDAVKILMEAGPNFPYSANVN------GETPLYMAAARGSKKMV-------AEILE 181
             G+   V++L EAG      A+++      G T L+MAA     ++V       A+I  
Sbjct: 85  GLGSDKCVRLLAEAG------ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 138

Query: 182 KCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKD 241
           +      D   G TAL  A                             P+     +GL+ 
Sbjct: 139 E------DE-RGLTALELAREILKTTPKG------------------NPMQFGRRIGLEK 173

Query: 242 ITALLLE 248
           +  +L  
Sbjct: 174 VINVLEG 180

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 97.8 bits (245), Expect = 8e-24
 Identities = 37/214 (17%), Positives = 66/214 (30%), Gaps = 51/214 (23%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV 134
           +  G+       +      +  L               +         +    T L  A 
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRN------------YR---------DSYNRTPLMVAC 43

Query: 135 QCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV-------AEILEK 182
             G  +A+  L+E          +      G T L  A       +        + +  K
Sbjct: 44  MLGMENAIDKLVENF------DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97

Query: 183 CSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDI 242
                    +GKT L  ++    +++   LL    ++  +R+  G TPL  ++  G  +I
Sbjct: 98  DF-------SGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEI 149

Query: 243 TALLLEFDGSSALILDKDRK-MTALLMAASQGHE 275
              LLE     A I  +D   +TA   A   G +
Sbjct: 150 VKKLLELG---ADISARDLTGLTAEASARIFGRQ 180

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 96.3 bits (241), Expect = 2e-23
 Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 56/221 (25%)

Query: 48  KNKEGESV----STKFVEQILEICPSLLIQTNAK---GDSPLHAAAKCGRPAVVKVLIEF 100
            +K GE V      K + Q L+         N +     +PL  A   G    +  L+E 
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 101 -AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN 159
             K +        K         + E +TAL  AV+   L   + L+  G      +NVN
Sbjct: 58  FDKLE-------DK---------DIEGSTALIWAVKNNRLGIAEKLLSKG------SNVN 95

Query: 160 -----GETPLYMAAARGSKKMV-------AEILEKCSSAAHDGPNGKTALHAAVNSYAAD 207
                G+TPL  +   G  +M        A + ++          G+T L  A     ++
Sbjct: 96  TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL-------EGETPLIVASKYGRSE 148

Query: 208 VVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
           +V+KLL     ++  RD  G T    +   G +++  +  E
Sbjct: 149 IVKKLLELGADIS-ARDLTGLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 76.3 bits (189), Expect = 3e-16
 Identities = 35/163 (21%), Positives = 55/163 (33%), Gaps = 53/163 (32%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEE 126
             K   G + L  A K  R  + + L+        K                    +   
Sbjct: 62  EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK--------------------DFSG 101

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV----- 176
            T L  ++  G  +    L+E G      ANVN     GETPL +A+  G  ++V     
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLEHG------ANVNDRNLEGETPLIVASKYGRSEIVKKLLE 155

Query: 177 --AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKR 217
             A+I  +      D   G TA  +A      +V++     +R
Sbjct: 156 LGADISAR------DL-TGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 63.6 bits (156), Expect = 6e-12
 Identities = 31/190 (16%), Positives = 59/190 (31%), Gaps = 58/190 (30%)

Query: 155 SANVNGETPLYMAAARGSKKMVAEIL--EKCSSAAHDGPNGKTALHAAVNSYAADVVEKL 212
             + NGE    +   +   +   + L   + S         +T L  A      + ++KL
Sbjct: 3   HMDKNGEIVEKIKDEKSINQ-NLDFLRNYRDS-------YNRTPLMVACMLGMENAIDKL 54

Query: 213 L---AKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK-MTALLM 268
           +    K      ++D  G T L  +       I   LL      + +  KD    T L+ 
Sbjct: 55  VENFDKLE----DKDIEGSTALIWAVKNNRLGIAEKLLSKG---SNVNTKDFSGKTPLMW 107

Query: 269 AASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEK 328
           +   G+  ++  ++ H           G N                          ++++
Sbjct: 108 SIIFGYSEMSYFLLEH-----------GAN--------------------------VNDR 130

Query: 329 NEMGNTPLHI 338
           N  G TPL +
Sbjct: 131 NLEGETPLIV 140

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 96.7 bits (242), Expect = 1e-23
 Identities = 42/186 (22%), Positives = 65/186 (34%), Gaps = 41/186 (22%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV 134
           N++ D  L  AAK G    VK L         ++ C               ++T LH A 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQ-----SVNCRDI---------EGRQSTPLHFAA 50

Query: 135 QCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV-------AEILEK 182
               +  V+ L++ G      A+V+     G  PL+ A + G  ++        A +   
Sbjct: 51  GYNRVSVVEYLLQHG------ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 104

Query: 183 CSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDI 242
                       T LH A      ++ + LL      T +++  G TPL      G  DI
Sbjct: 105 -------DLWKFTPLHEAAAKGKYEICKLLLQHGADPT-KKNRDGNTPLDLVKD-GDTDI 155

Query: 243 TALLLE 248
             LL  
Sbjct: 156 QDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 90.9 bits (227), Expect = 1e-21
 Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 34/177 (19%)

Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV- 176
           N E +  L EA + G+++ VK L         S N         TPL+ AA      +V 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQ-----SVNCRDIEGRQSTPLHFAAGYNRVSVVE 59

Query: 177 ------AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLL---AKKRHLTRERDDCG 227
                 A++  K          G   LH A +    +V E L+   A         D   
Sbjct: 60  YLLQHGADVHAKDK-------GGLVPLHNACSYGHYEVAELLVKHGAVV----NVADLWK 108

Query: 228 WTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAH 284
           +TPLH +A  G  +I  LLL+  G+     ++D   T  L     G   +   +   
Sbjct: 109 FTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGN-TP-LDLVKDGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 44.3 bits (106), Expect = 2e-05
 Identities = 18/113 (15%), Positives = 29/113 (25%), Gaps = 40/113 (35%)

Query: 227 GWTPLHHSAYLGLKDITALLLEFDGSSALILDKD-RKMTALLMAASQGHESLAGTIIAHY 285
               L  +A  G  +    L           D + R+ T L  AA     S+   ++ H 
Sbjct: 8   ADRQLLEAAKAGDVETVKKLCTVQS--VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH- 64

Query: 286 PECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                     G +                          +  K++ G  PLH 
Sbjct: 65  ----------GAD--------------------------VHAKDKGGLVPLHN 81

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 96.7 bits (242), Expect = 1e-23
 Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 17/171 (9%)

Query: 78  GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
               +H  A  G    +   IE         +            T+EE  T L  A   G
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIE---------QENVINH------TDEEGFTPLMWAAAHG 47

Query: 138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTAL 197
            +  V+ L++ G + P       E+ L +A ++G   +V  +L+          NG T L
Sbjct: 48  QIAVVEFLLQNGAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 106

Query: 198 HAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
             AV+      V+ LL      T    D G+  +  +  LG + +  ++  
Sbjct: 107 LYAVHGNHVKCVKMLLESGADPT-IETDSGYNSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 94.8 bits (237), Expect = 4e-23
 Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 14/163 (8%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILE 181
           + ++H+    G +  +   +E          +N     G TPL  AAA G   +V  +L+
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQE------NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ 57

Query: 182 KCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKD 241
             +     G   ++AL  A +    D+V+ LL     +  E D  G TPL ++ +     
Sbjct: 58  NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVK 116

Query: 242 ITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAH 284
              +LLE  G+   I        ++ +A + G+ S+   I +H
Sbjct: 117 CVKMLLE-SGADPTIETDSGY-NSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 72.0 bits (178), Expect = 5e-15
 Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 8/146 (5%)

Query: 159 NGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH 218
                ++  AA+G    +A  +E+ +   H    G T L  A       VVE LL     
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 219 LTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLA 278
                     + L  +   G  DI  +LL+  G      D +   T LL A    H    
Sbjct: 62  PQ-LLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGG-TPLLYAVHGNHVKCV 118

Query: 279 GTIIAH--YPECYDLVDNGGWNVLHF 302
             ++     P    +  + G+N +  
Sbjct: 119 KMLLESGADPT---IETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 65.5 bits (161), Expect = 7e-13
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 29/112 (25%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
               +S L  A   G   +VK+L++                        +    T L  A
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLLDCGVDVN-------EY---------DWNGGTPLLYA 109

Query: 134 VQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEIL 180
           V   ++  VK+L+E+G      A+       G   + +A A G +  V +++
Sbjct: 110 VHGNHVKCVKMLLESG------ADPTIETDSGYNSMDLAVALGYRS-VQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 59.3 bits (145), Expect = 1e-10
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 40/147 (27%)

Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG 251
               ++H          +   + ++  +    D+ G+TPL  +A  G   +   LL+ +G
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQ-NG 59

Query: 252 SSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESK 311
           +   +L K R  +AL +A S+G+       I        L+D G                
Sbjct: 60  ADPQLLGKGR-ESALSLACSKGYTD-----IVKM-----LLDCG---------------- 92

Query: 312 LKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                        ++E +  G TPL  
Sbjct: 93  -----------VDVNEYDWNGGTPLLY 108

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 26/89 (29%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
           N     G +PL  A        VK+L+E  A                   +  +    ++
Sbjct: 96  NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT----------------IETDSGYNSM 139

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVN 159
             AV  G     +++            + 
Sbjct: 140 DLAVALGYRSVQQVIESHL------LKLL 162

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 98.5 bits (246), Expect = 2e-23
 Identities = 35/212 (16%), Positives = 57/212 (26%), Gaps = 39/212 (18%)

Query: 78  GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC 136
           G   L    +          I    + +                  N      L ++   
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVK-----------------FNPLPLALLLDSSLE 47

Query: 137 GNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV-------AEILEKCSSAAHD 189
           G  D V+ ++    + P   N  G T L+ A   G  ++V         +    S     
Sbjct: 48  GEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS----- 101

Query: 190 GPNGKTALHAAVNSYAADVVEKLL---AKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
             +G T LH A +     V + L+   A    +T   D             G    +  L
Sbjct: 102 --DGWTPLHCAASCNNVQVCKFLVESGAAVFAMT-YSDMQTAADKCEEMEEGYTQCSQFL 158

Query: 247 LEFDGSSALILDKDRKMTALLMAASQGHESLA 278
                    I++K     AL     Q  + L 
Sbjct: 159 YG-VQEKMGIMNKGVI-YALWDYEPQNDDELP 188

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 95.0 bits (237), Expect = 3e-22
 Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 45/218 (20%)

Query: 72  IQTNAKGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
           ++ N    + L  ++  G   +V+ +I                       L N+E  TAL
Sbjct: 31  VKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS----------------LPNDEGITAL 74

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV-------AE 178
           H AV  G+ + VK L++ G       NVN     G TPL+ AA+  + ++        A 
Sbjct: 75  HNAVCAGHTEIVKFLVQFG------VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128

Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
           +        +            +        + L   +  +    +      L       
Sbjct: 129 VFAMT----YSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG-IMNKGVIYALWDYEPQN 183

Query: 239 LKDITALLLEFDGSSALILDK-DRKMTALLMAASQGHE 275
             +    L   +G    I+ + D        A     E
Sbjct: 184 DDE----LPMKEGDCMTIIHREDEDEIEWWWARLNDKE 217

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 91.5 bits (228), Expect = 4e-21
 Identities = 33/181 (18%), Positives = 61/181 (33%), Gaps = 15/181 (8%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCS-- 184
             +L    +          +  G       N      L  ++  G   +V  I+ +    
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDP 63

Query: 185 SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITA 244
           S  +D   G TALH AV +   ++V+ L+    ++    D  GWTPLH +A      +  
Sbjct: 64  SLPND--EGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCK 120

Query: 245 LLLEFDGSSALILDKDRK----MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVL 300
            L+E   S A +                   +G+   +  +     +   +++ G    L
Sbjct: 121 FLVE---SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM-GIMNKGVIYAL 176

Query: 301 H 301
            
Sbjct: 177 W 177

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 77.3 bits (191), Expect = 3e-16
 Identities = 30/215 (13%), Positives = 66/215 (30%), Gaps = 22/215 (10%)

Query: 158 VNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKR 217
           + G+  L        +K                P     L  +      D+V++++ +  
Sbjct: 3   ITGQVSLPPGKRTNLRK-TGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 218 HLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK----MTALLMAASQG 273
             +   +D G T LH++   G  +I   L++F G      + +       T L  AAS  
Sbjct: 62  DPS-LPNDEGITALHNAVCAGHTEIVKFLVQF-GV-----NVNAADSDGWTPLHCAASCN 114

Query: 274 HESLAGTIIAH--YPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEM 331
           +  +   ++            D          M   +    + L      +  +   N+ 
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG---VQEKMGIMNKG 171

Query: 332 GNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKK 366
               L        +  +E+   + +GD   +  ++
Sbjct: 172 VIYALWDYE---PQNDDELP--MKEGDCMTIIHRE 201

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 64.9 bits (159), Expect = 5e-12
 Identities = 32/176 (18%), Positives = 47/176 (26%), Gaps = 56/176 (31%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIE-----FAKKQPTAMKCCAKTAWQMLGLTNEEE 126
           NA    G +PLH AA C    V K L+E     FA                    ++ + 
Sbjct: 97  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY-----------------SDMQT 139

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK---C 183
                E ++ G     + L           N      L+    +       E+  K   C
Sbjct: 140 AADKCEEMEEGYTQCSQFLYGVQEK-MGIMNKGVIYALWDYEPQNDD----ELPMKEGDC 194

Query: 184 SSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGL 239
            +  H     +     A                    R  D  G+ P +    LGL
Sbjct: 195 MTIIHREDEDEIEWWWA--------------------RLNDKEGYVPRN---LLGL 227

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 224 DDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIA 283
           +  G   L       L+   +  +        +      +  LL ++ +G   L   II 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIA---HGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 284 HYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
              +   L ++ G   LH  + + H   +K L++   +   ++  +  G TPLH 
Sbjct: 59  EVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQ---FGVNVNAADSDGWTPLHC 109

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 97.7 bits (244), Expect = 2e-23
 Identities = 51/245 (20%), Positives = 73/245 (29%), Gaps = 58/245 (23%)

Query: 78  GDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEENTALHE 132
               L  AA  G   VV+  ++                            NEE  TALH 
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMNDPSQP--------------------NEEGITALHN 60

Query: 133 AVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV-------AEIL 180
           A+   N   V  L+ AG      ANVN     G TPL+ AA+     +        A I 
Sbjct: 61  AICGANYSIVDFLITAG------ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF 114

Query: 181 EKCSSAAHDGPNGKTALHAAVNSY--AADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
                      +G TA           AD    L   ++ +    +      L   +   
Sbjct: 115 AT------TLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEF 167

Query: 239 LKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWN 298
             ++     E +  + L  D   + T    AA  G E   G +  +Y   +  V      
Sbjct: 168 GDEL--SFREGESVTVLRRDGPEE-TDWWWAALHGQE---GYVPRNYFGLFPRVKPQRSK 221

Query: 299 VLHFL 303
           V H  
Sbjct: 222 VKHHH 226

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 76.1 bits (188), Expect = 5e-16
 Identities = 37/203 (18%), Positives = 73/203 (35%), Gaps = 15/203 (7%)

Query: 142 VKILMEAG--PNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHA 199
           ++ ++     P     A +N    L  AA  G  ++V + +++ +  +     G TALH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 200 AVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDK 259
           A+      +V+ L+    ++    D  GWTPLH +A      I   L++     A I   
Sbjct: 61  AICGANYSIVDFLITAGANVN-SPDSHGWTPLHCAASCNDTVICMALVQ---HGAAIFAT 116

Query: 260 DRK--MTALLMAAS--QGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRL 315
                 TA        +G+   A  +     +   L+++G    L     +    +L   
Sbjct: 117 TLSDGATAFEKCDPYREGYADCATYLADVE-QSMGLMNSGAVYALWD-YSAEFGDELSFR 174

Query: 316 LKDPLYKSFIDEKNEMGNTPLHI 338
             + +    +  ++    T    
Sbjct: 175 EGESVT---VLRRDGPEETDWWW 194

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 27/174 (15%), Positives = 47/174 (27%), Gaps = 41/174 (23%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIE-----FAKKQPTAMKCCAKTAWQMLGLTNEEE 126
           N+    G +PLH AA C    +   L++     FA                    T  + 
Sbjct: 81  NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT-------------------TLSDG 121

Query: 127 NTALHEA--VQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEI 179
            TA  +    + G  D    L +         ++          L+  +A    ++    
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVE------QSMGLMNSGAVYALWDYSAEFGDELSFRE 175

Query: 180 LEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHH 233
            E  +    DG   +T    A        V +         + +        HH
Sbjct: 176 GESVTVLRRDG-PEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHHH 228

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 16/107 (14%), Positives = 27/107 (25%), Gaps = 19/107 (17%)

Query: 73  QTNAKGDSPLHAAA--KCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
            T + G +        + G       L +  +                +GL N     AL
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQS---------------MGLMNSGAVYAL 160

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVA 177
            +       D +              +   ET  + AA  G +  V 
Sbjct: 161 WDYSA-EFGDELSFREGESVT-VLRRDGPEETDWWWAALHGQEGYVP 205

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 97.9 bits (244), Expect = 3e-23
 Identities = 46/229 (20%), Positives = 75/229 (32%), Gaps = 44/229 (19%)

Query: 75  NAKGDSPLHAAA---KCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
            + G + L  A    + G  A +  L++  K                      + ++ALH
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGN----PKPLVNAQCTDEFYQGHSALH 95

Query: 132 EAVQCGNLDAVKILMEAG------------PNFPYSANVNGETPLYMAAARGSKKMVAEI 179
            A++  +L  VK+L+E G                 +    GE PL +AA      +V  +
Sbjct: 96  IAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155

Query: 180 LEKCSSAAH---DGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY 236
           LE     A        G T LHA V                      +    + L    Y
Sbjct: 156 LENPHQPASLEATDSLGNTVLHALVM------------------IADNSPENSALVIHMY 197

Query: 237 LGLKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAH 284
            GL  + A L     +  L    + + +T L +AA +G   +   I+  
Sbjct: 198 DGLLQMGARLCP---TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 91.8 bits (228), Expect = 5e-21
 Identities = 51/279 (18%), Positives = 86/279 (30%), Gaps = 49/279 (17%)

Query: 3   PKLYEAATNGEIEPFNGI-------AKDNLRSIVTHNNK-HTVLHVNIARQSLKNKEGES 54
            +L+   + G  E   G+       +K    S  T  +   T L    A   L  ++G +
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM--KA--VLNLQDGVN 59

Query: 55  VSTKFVEQILEICPSLLIQTNA-------KGDSPLHAAAKCGRPAVVKVLIEF-AKKQPT 106
                + QI +   +     NA       +G S LH A +      VK+L+E  A     
Sbjct: 60  ACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-- 117

Query: 107 AMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GE 161
            ++ C +   +  G         L  A      D V  L+E        A++      G 
Sbjct: 118 -LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ---PASLEATDSLGN 173

Query: 162 TPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTR 221
           T L+                             +AL   +      +  +L    +    
Sbjct: 174 TVLHALVMIADNS-----------------PENSALVIHMYDGLLQMGARLCPTVQLEE- 215

Query: 222 ERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKD 260
             +  G TPL  +A  G  +I   +L+ + S A      
Sbjct: 216 ISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 90.6 bits (225), Expect = 1e-20
 Identities = 44/272 (16%), Positives = 71/272 (26%), Gaps = 63/272 (23%)

Query: 81  PLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV---QCG 137
            L +    G P  +  L+E+ +     +   A T             T L +AV   Q G
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE-------GSTGKTCLMKAVLNLQDG 57

Query: 138 NLDAVKILMEAGPNFPYS-----ANVN-----GETPLYMAAARGSKKMVAEILEKCSSAA 187
               +  L++   +         A        G + L++A  + S + V  ++E  +   
Sbjct: 58  VNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH 117

Query: 188 HDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLL 247
                     H     Y                      G  PL  +A     D+   LL
Sbjct: 118 LRACGRFFQKHQGTCFY---------------------FGELPLSLAACTKQWDVVTYLL 156

Query: 248 EFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVS 306
           E     A +   D    T L                          ++   + L   M  
Sbjct: 157 ENPHQPASLEATDSLGNTVLHALVMIAD------------------NSPENSALVIHMYD 198

Query: 307 LHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                  RL          +  N  G TPL +
Sbjct: 199 GLLQMGARLCP---TVQLEEISNHQGLTPLKL 227

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 93.6 bits (234), Expect = 1e-22
 Identities = 34/189 (17%), Positives = 58/189 (30%), Gaps = 51/189 (26%)

Query: 77  KGDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
              + L +AA  G    +  L++      A+                    N    TAL 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQ--------------------NGFGRTALQ 43

Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV-------AEI 179
                GN +  + L+  G      AN +     G   ++ AA  G    +       A++
Sbjct: 44  VMKL-GNPEIARRLLLRG------ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96

Query: 180 LEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGL 239
             + +        G   LH A       VVE L+         R+  G T    +   G 
Sbjct: 97  NIEDN-------EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149

Query: 240 KDITALLLE 248
            ++ +L+  
Sbjct: 150 NEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 90.5 bits (226), Expect = 1e-21
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 28/174 (16%)

Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV- 176
            E     L  A   G+L+ +  L++         NVN     G T L      G+ ++  
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNN------VNVNAQNGFGRTAL-QVMKLGNPEIAR 54

Query: 177 ------AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTP 230
                 A    K          G   +H A  +   D ++ LL  +  +    D+ G  P
Sbjct: 55  RLLLRGANPDLKDR-------TGFAVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLP 106

Query: 231 LHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAH 284
           LH +A  G   +   L++   S+    +     TA  +A   G   +   + A+
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD-TACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 74.3 bits (184), Expect = 7e-16
 Identities = 36/154 (23%), Positives = 55/154 (35%), Gaps = 39/154 (25%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
           NA+   G + L      G P + + L+   A           K         +      +
Sbjct: 32  NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-------LK---------DRTGFAVI 74

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCSS 185
           H+A + G LD ++ L+E        A+VN     G  PL++AA  G  + V E L     
Sbjct: 75  HDAARAGFLDTLQTLLEFQ------ADVNIEDNEGNLPLHLAAKEGHLR-VVEFL--VKH 125

Query: 186 AAHD----GPNGKTALHAAVNSYAADVVEKLLAK 215
            A +       G TA   A      +VV  + A 
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 17/78 (21%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
           N +   G+ PLH AAK G   VV+ L++      TA     +         N + +TA  
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKH-----TASNVGHR---------NHKGDTACD 142

Query: 132 EAVQCGNLDAVKILMEAG 149
            A   G  + V ++   G
Sbjct: 143 LARLYGRNEVVSLMQANG 160

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 92.4 bits (231), Expect = 2e-22
 Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 19/159 (11%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV-------AEI 179
              L EA + G  D V+ILM  G  F  + +  G +PL++AA  G               
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 180 LEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGL 239
             +           +T LH A +   A++VE LL     +   +D    T LH +     
Sbjct: 61  DARTK-------VDRTPLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNH 112

Query: 240 KDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLA 278
           +++  LL+++ G+      K  K TA  ++   G+E LA
Sbjct: 113 QEVVELLIKY-GADVHTQSKFCK-TAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 92.1 bits (230), Expect = 3e-22
 Identities = 39/185 (21%), Positives = 64/185 (34%), Gaps = 50/185 (27%)

Query: 78  GDSPLHAAAKCGRPAVVKVLIE----FAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
               L  AA+ G+   V++L+     F                      +    + LH A
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT--------------------DWLGTSPLHLA 41

Query: 134 VQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV-------AEILE 181
            Q G+    ++L+ AG       + +       TPL+MAA+ G   +V       A++  
Sbjct: 42  AQYGHFSTTEVLLRAG------VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA 95

Query: 182 KCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKD 241
           K            TALH A      +VVE L+     +   +     T    S   G +D
Sbjct: 96  KDM-------LKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDISIDNGNED 147

Query: 242 ITALL 246
           +  +L
Sbjct: 148 LAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 67.4 bits (166), Expect = 1e-13
 Identities = 37/181 (20%), Positives = 56/181 (30%), Gaps = 43/181 (23%)

Query: 159 NGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH 218
           +    L  AA  G    V  ++   +    D   G + LH A         E LL     
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDW-LGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 219 LTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDR-KMTALLMAASQGHESL 277
               R     TPLH +A  G  +I  +LL+     A +  KD  KMTAL  A    H+ +
Sbjct: 60  RD-ARTKVDRTPLHMAASEGHANIVEVLLKHG---ADVNAKDMLKMTALHWATEHNHQEV 115

Query: 278 AGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLH 337
              +I +           G +                          +  +++   T   
Sbjct: 116 VELLIKY-----------GAD--------------------------VHTQSKFCKTAFD 138

Query: 338 I 338
           I
Sbjct: 139 I 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 65.5 bits (161), Expect = 7e-13
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 40/120 (33%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEE 126
           +A+     +PLH AA  G   +V+VL++      AK                    +  +
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK--------------------DMLK 100

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILE 181
            TALH A +  + + V++L++ G      A+V+      +T   ++   G++  +AEIL+
Sbjct: 101 MTALHWATEHNHQEVVELLIKYG------ADVHTQSKFCKTAFDISIDNGNED-LAEILQ 153

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 94.1 bits (234), Expect = 8e-22
 Identities = 45/235 (19%), Positives = 75/235 (31%), Gaps = 47/235 (20%)

Query: 75  NAKGDSPLHAA---AKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
              G + L  A      G+   + +L++ A+K         +        +  +  TALH
Sbjct: 51  PETGKTCLLKAMLNLHNGQNDTIALLLDVARK----TDSLKQFVNASYTDSYYKGQTALH 106

Query: 132 EAVQCGNLDAVKILMEAG-------------PNFPYSANVNGETPLYMAAARGSKKMVAE 178
            A++  N+  V +L+E G                       GE PL +AA      +V  
Sbjct: 107 IAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166

Query: 179 ILEKCSSAAH---DGPNGKTALHAAV---------NSYAADVVEKLLAKKRHLTRE---- 222
           +L+     A        G T LHA V           +   +  ++L     L       
Sbjct: 167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLE 226

Query: 223 --RDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHE 275
              +  G TPL  +A  G   + A +L+         +   +      AA   H 
Sbjct: 227 EITNRKGLTPLALAASSGKIGVLAYILQ--------REIH-EPECRHAAAHHHHH 272

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 92.2 bits (229), Expect = 4e-21
 Identities = 40/253 (15%), Positives = 74/253 (29%), Gaps = 50/253 (19%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV 134
                  +  A        ++ L+ F ++    +               E   T L +A+
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKD-------PETGKTCLLKAM 62

Query: 135 ---QCGNLDAVKILMEAGPN---FPYSANVN-------GETPLYMAAARGSKKMV----- 176
                G  D + +L++            N +       G+T L++A  R +  +V     
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122

Query: 177 --AEILEKCSSAAHDGPN-------GKTALHAAVNSYAADVVEKLLAKKRHL--TRERDD 225
             A++    +               G+  L  A  +    +V+ LL           RD 
Sbjct: 123 NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS 182

Query: 226 CGWTPLHHSAYLGLKDITALLLEFD-------------GSSALILDKDRK-MTALLMAAS 271
            G T LH    +    +                      +  L    +RK +T L +AAS
Sbjct: 183 VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS 242

Query: 272 QGHESLAGTIIAH 284
            G   +   I+  
Sbjct: 243 SGKIGVLAYILQR 255

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 71.0 bits (174), Expect = 8e-14
 Identities = 34/217 (15%), Positives = 58/217 (26%), Gaps = 67/217 (30%)

Query: 157 NVNGETPLYMAAARGSKKMVAEILEKCSSA--------AHDGPNGKTALHAAVNSYAA-- 206
            +     ++ A A+ + + +  +L     +          D   GKT L  A+ +     
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 207 -DVVEKLLAKKRHL----------TRERDDCGWTPLHHSAYLGLKDITALLLE------- 248
            D +  LL   R              +    G T LH +       +  LL+E       
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129

Query: 249 -----FDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFL 303
                F   +            L +AA     +     I  +     L+ N         
Sbjct: 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLA-----IVKF-----LLQNSWQPAD--- 176

Query: 304 MVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILA 340
                                I  ++ +GNT LH L 
Sbjct: 177 ---------------------ISARDSVGNTVLHALV 192

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 36/147 (24%)

Query: 5   LYEAATNGEIEPF-----NGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKF 59
           L  AA   ++        N     ++ +    +  +TVLH  +   +    +     T  
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISA--RDSVGNTVLHA-LVEVADNTVDNTKFVTSM 208

Query: 60  VEQILEICPSLLIQ------TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAK 113
             +IL +   L         TN KG +PL  AA  G+  V+  +++             +
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ-------------R 255

Query: 114 TAWQMLGLTNEEENTALHEAVQCGNLD 140
                       E    H A    +  
Sbjct: 256 EI---------HEPECRHAAAHHHHHH 273

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 88.2 bits (220), Expect = 7e-21
 Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 5/158 (3%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA 186
              L  A   G++  V+ L+      P + N  G+T L      GS  +  E+L++ +S 
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASP 61

Query: 187 AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
                +G + +H A  +   D ++ L+     +    D  G  P+H +   G   + + L
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 247 LEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAH 284
                S     D     T L +A  +G + L   +  H
Sbjct: 121 AA--ESDLHRRDARGL-TPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 87.9 bits (219), Expect = 9e-21
 Identities = 42/179 (23%), Positives = 63/179 (35%), Gaps = 32/179 (17%)

Query: 77  KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC 136
           +    L  AA  G    V+ L+      P A               N    TAL      
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDA--------------LNRFGKTALQVM-MF 45

Query: 137 GNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV-------AEILEKCSSAAHD 189
           G+      L++ G + P   + +G +P++ AA  G    +       A++         D
Sbjct: 46  GSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP------D 98

Query: 190 GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
           G  G   +H AV      VV   LA +  L   RD  G TPL  +   G +D+  +L  
Sbjct: 99  G-TGALPIHLAVQEGHTAVVS-FLAAESDLH-RRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 74.8 bits (185), Expect = 4e-16
 Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 47/182 (25%)

Query: 160 GETPLYMAAARGSKKMVAEILEKCSSAAH---DGPNGKTALHAAVNSYAADVVEKLLAKK 216
               L  AAARG  + V  +L +     H       GKTAL   +      +  +LL + 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRE--LVHPDALNRFGKTALQVMMFGS-TAIALELLKQG 58

Query: 217 RHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHES 276
                 +D  G +P+H +A  G  D   +L+E  G+   + D       + +A  +GH +
Sbjct: 59  ASPN-VQDTSGTSPVHDAARTGFLDTLKVLVEH-GADVNVPDGTGA-LPIHLAVQEGHTA 115

Query: 277 LAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPL 336
           +   + A                                       S +  ++  G TPL
Sbjct: 116 VVSFLAAE--------------------------------------SDLHRRDARGLTPL 137

Query: 337 HI 338
            +
Sbjct: 138 EL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 62.8 bits (154), Expect = 5e-12
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 33/115 (28%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEE 126
           N +   G SP+H AA+ G    +KVL+E                            +   
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP--------------------DGTG 101

Query: 127 NTALHEAVQCGNLDAVKILME-AGPNFPYSANVNGETPLYMAAARGSKKMVAEIL 180
              +H AVQ G+   V  L   +  +     +  G TPL +A  RG++  + +IL
Sbjct: 102 ALPIHLAVQEGHTAVVSFLAAESDLH---RRDARGLTPLELALQRGAQD-LVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 44.7 bits (107), Expect = 9e-06
 Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 23/85 (27%)

Query: 70  LLIQ----TNAK---GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLT 122
           +L++     N     G  P+H A + G  AVV  L   +                     
Sbjct: 86  VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDL----------------HRR 129

Query: 123 NEEENTALHEAVQCGNLDAVKILME 147
           +    T L  A+Q G  D V IL  
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQG 154

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 91.0 bits (226), Expect = 8e-21
 Identities = 46/234 (19%), Positives = 76/234 (32%), Gaps = 50/234 (21%)

Query: 60  VEQILEICPSLL----------IQTNAKGDSPLHAAA---KCGRPAVVKVLIEFAKKQPT 106
            + +  +   LL           +  + G + L  A      GR   + +L++ A+K   
Sbjct: 18  PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEK--- 74

Query: 107 AMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAG-------------PNFP 153
                 +              TALH A++      V++L+E G             P   
Sbjct: 75  -TGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDE 133

Query: 154 YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAH----DGPNGKTALHAAV-------- 201
                 GE PL +AA      +V  + E     A     D   G T LHA V        
Sbjct: 134 GGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDS-RGNTVLHALVAIADNTRE 192

Query: 202 -NSYAADVVEKLLAK------KRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
              +   + + LL K        +L    ++ G +PL  +A  G   I   ++ 
Sbjct: 193 NTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 68.7 bits (168), Expect = 3e-13
 Identities = 38/245 (15%), Positives = 66/245 (26%), Gaps = 54/245 (22%)

Query: 128 TALHEAVQCGNLDA----VKILMEAGPNF---PYSANVNGETPLYMAAARGSKKMVAEIL 180
             L + V  G+ D     +  L+          +     G+T L  A             
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLN---------- 56

Query: 181 EKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK 240
                    G N    +   +     ++ E + +      R+    G T LH +     K
Sbjct: 57  ------LSAGRNDTIPILLDIAEKTGNMREFINSP----FRDVYYRGQTALHIAIERRCK 106

Query: 241 DITALLLE------------FDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPEC 288
               LL+E            F                L +AA      +   +  +  + 
Sbjct: 107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166

Query: 289 YDL--VDNGGWNVLHFLMVSLHESKLKRLLKDPLYK-------------SFIDEKNEMGN 333
            DL   D+ G  VLH L+     ++        +Y              +     N  G 
Sbjct: 167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGL 226

Query: 334 TPLHI 338
           +PL +
Sbjct: 227 SPLMM 231

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 67.5 bits (165), Expect = 9e-13
 Identities = 35/214 (16%), Positives = 54/214 (25%), Gaps = 67/214 (31%)

Query: 160 GETPLYMAAARGSKKMVAEILEKCSS--------AAHDGPNGKTALH-AAVNSYAA--DV 208
               L+   +RGS   +  +L    +           +   GKT L  A +N  A   D 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 209 VEKLLAKKRHLT----------RERDDCGWTPLHHSAYLGLKDITALLLE---------- 248
           +  LL                 R+    G T LH +     K    LL+E          
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 249 --FDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVS 306
             F                L +AA      +   +  +  +  D                
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD---------------- 168

Query: 307 LHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILA 340
                             +  ++  GNT LH L 
Sbjct: 169 ------------------LRRQDSRGNTVLHALV 184

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 27/136 (19%), Positives = 40/136 (29%), Gaps = 31/136 (22%)

Query: 78  GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
           G+ PL  AA   +P +V  L E             +         +   NT LH  V   
Sbjct: 140 GELPLSLAACTNQPHIVHYLTE---NGHKQADLRRQ---------DSRGNTVLHALVAIA 187

Query: 138 N---------LDAVKILMEAG------PNFPYSANVNGETPLYMAAARGSKKMVAEILEK 182
           +              +L+          N     N +G +PL MAA  G   +   I+ +
Sbjct: 188 DNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247

Query: 183 CSSAAHDGPNGKTALH 198
                 D        H
Sbjct: 248 ---EIAD-AAAHHHHH 259

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 85.9 bits (214), Expect = 3e-20
 Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 26/136 (19%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV----- 176
              L EA + G  D V+ILM  G      A+VN     G TPLY+A A G  ++V     
Sbjct: 15  GKKLLEAARAGQDDEVRILMANG------ADVNAKDEYGLTPLYLATAHGHLEIVEVLLK 68

Query: 177 --AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS 234
             A++    +        G T LH A      ++ E LL     +   +D  G T    S
Sbjct: 69  NGADVNAVDA-------IGFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDIS 120

Query: 235 AYLGLKDITALLLEFD 250
              G +D+  +L + +
Sbjct: 121 IGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 64.3 bits (158), Expect = 1e-12
 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 19/144 (13%)

Query: 149 GPNFPYSANVNGETPLYMAAARGSKKMV-------AEILEKCSSAAHDGPNGKTALHAAV 201
           G +  +    +    L  AA  G    V       A++  K          G T L+ A 
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDE-------YGLTPLYLAT 55

Query: 202 NSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDR 261
                ++VE LL     +    D  G+TPLH +A++G  +I  +LL+     A +  +D+
Sbjct: 56  AHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLAAFIGHLEIAEVLLKHG---ADVNAQDK 111

Query: 262 K-MTALLMAASQGHESLAGTIIAH 284
              TA  ++   G+E LA  +   
Sbjct: 112 FGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 62.8 bits (154), Expect = 4e-12
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 40/119 (33%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEE 126
           NAK   G +PL+ A   G   +V+VL++      A                     +   
Sbjct: 41  NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV--------------------DAIG 80

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEIL 180
            T LH A   G+L+  ++L++ G      A+VN     G+T   ++   G++  +AEIL
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHG------ADVNAQDKFGKTAFDISIGNGNED-LAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 56.2 bits (137), Expect = 7e-10
 Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 48/163 (29%)

Query: 177 AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY 236
           +          H G +    L  A  +   D V  L+A    +   +D+ G TPL+ +  
Sbjct: 4   SHHHH------HHGSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATA 56

Query: 237 LGLKDITALLLEFDGSSALILDKDR-KMTALLMAASQGHESLAGTIIAHYPECYDLVDNG 295
            G  +I  +LL+     A +   D    T L +AA  GH  +A  ++ H           
Sbjct: 57  HGHLEIVEVLLKNG---ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH----------- 102

Query: 296 GWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           G +                          ++ +++ G T   I
Sbjct: 103 GAD--------------------------VNAQDKFGKTAFDI 119

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 28/81 (34%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-----AKKQPTAMKCCAKTAWQMLGLTNEEE 126
           NA    G +PLH AA  G   + +VL++      A+                    ++  
Sbjct: 74  NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ--------------------DKFG 113

Query: 127 NTALHEAVQCGNLDAVKILME 147
            TA   ++  GN D  +IL +
Sbjct: 114 KTAFDISIGNGNEDLAEILQK 134

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 84.3 bits (210), Expect = 7e-20
 Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 26/134 (19%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV----- 176
            T LH A + G+L+ VK+L+EAG      A+VN     G TPL++AA  G  ++V     
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAG------ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 177 --AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS 234
             A++  K         NG+T LH A  +   +VV+ LL     +   +D  G TPLH +
Sbjct: 57  AGADVNAKDK-------NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLA 108

Query: 235 AYLGLKDITALLLE 248
           A  G  ++  LLLE
Sbjct: 109 ARNGHLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 65.4 bits (161), Expect = 3e-13
 Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 25/137 (18%)

Query: 159 NGETPLYMAAARGSKKMV-------AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEK 211
           NG TPL++AA  G  ++V       A++  K         NG+T LH A  +   +VV+ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-------NGRTPLHLAARNGHLEVVKL 53

Query: 212 LL---AKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK-MTALL 267
           LL   A        +D  G TPLH +A  G  ++  LLLE     A +  KD+   T L 
Sbjct: 54  LLEAGADV----NAKDKNGRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLH 106

Query: 268 MAASQGHESLAGTIIAH 284
           +AA  GH  +   ++  
Sbjct: 107 LAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 65.1 bits (160), Expect = 5e-13
 Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 32/115 (27%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
           NAK   G +PLH AA+ G   VVK+L+E  A          AK         ++   T L
Sbjct: 29  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-------AK---------DKNGRTPL 72

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEIL 180
           H A + G+L+ VK+L+EAG      A+VN     G TPL++AA  G  + V ++L
Sbjct: 73  HLAARNGHLEVVKLLLEAG------ADVNAKDKNGRTPLHLAARNGHLE-VVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 53.1 bits (129), Expect = 6e-09
 Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 42/148 (28%)

Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG 251
           NG+T LH A  +   +VV+ LL     +   +D  G TPLH +A  G  ++  LLLE   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLE--- 56

Query: 252 SSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHES 310
           + A +  KD+   T L +AA  GH       +        L++ G               
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLE-----VVKL-----LLEAGA-------------- 92

Query: 311 KLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                  D      ++ K++ G TPLH+
Sbjct: 93  -------D------VNAKDKNGRTPLHL 107

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 44.6 bits (107), Expect = 6e-06
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 20/79 (25%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
           NAK   G +PLH AA+ G   VVK+L+E  A          AK         ++   T L
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-------AK---------DKNGRTPL 105

Query: 131 HEAVQCGNLDAVKILMEAG 149
           H A + G+L+ VK+L+EAG
Sbjct: 106 HLAARNGHLEVVKLLLEAG 124

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 88.9 bits (220), Expect = 1e-19
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 19/198 (9%)

Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARG---SKKMVAE 178
            +E  NT LH      NL+ VK L++ G N     +  GE+ L  A              
Sbjct: 127 VDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEA 185

Query: 179 ILEKCSSAAHDG-PNGKTALHAAVNS-----------YAADVVEKLLAKKRHLTRERDDC 226
           +L+             +T LH  + +           Y  D++   + KK++   +    
Sbjct: 186 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 245

Query: 227 GWTPLHHSAYLGLKDITALLLEFDGSSALILD-KDRK-MTALLMAASQGHESLAGTIIAH 284
                 +      KD     L+     A +L+ +D    T L +AA  G+ S+   ++ +
Sbjct: 246 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY 305

Query: 285 YPECYDLVDNGGWNVLHF 302
             +   + +  G   + F
Sbjct: 306 GADP-FIANKSGLRPVDF 322

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 81.6 bits (201), Expect = 4e-17
 Identities = 41/272 (15%), Positives = 81/272 (29%), Gaps = 54/272 (19%)

Query: 31  HNNKHTVLHVNIARQSLKNKEGESVSTKF-VEQILEICPSLLIQTNA--------KGDSP 81
                T L+ + + ++ +             + +L+        T           G++P
Sbjct: 75  IQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTP 134

Query: 82  LHAAAKCGRPAVVKVLIE-----FAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC 136
           LH         +VK L++                            +    + L +AV+ 
Sbjct: 135 LHWLTSIANLELVKHLVKHGSNRLYG--------------------DNMGESCLVKAVKS 174

Query: 137 GN---LDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKK------------MVAEILE 181
            N       + L++         +    T L+                     ++  I++
Sbjct: 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234

Query: 182 KCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTR---ERDDCGWTPLHHSAYLG 238
           K +     G N K +     N    D + + L  K  +      +D  G T L+ +A LG
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294

Query: 239 LKDITALLLEFDGSSALILDKDRKMTALLMAA 270
              I   LL++ G+   I +K      +   A
Sbjct: 295 NISIVDALLDY-GADPFIANKSGL-RPVDFGA 324

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 84.0 bits (209), Expect = 1e-19
 Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 12/132 (9%)

Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV 176
           TN    T LH A   G++ +V+ L++ G      ++ N     G TPL+ A   G  K+V
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNG------SDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 177 AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY 236
             +L+  +     G    + LH A  +   D+V+ LL+         +  G  P+ ++  
Sbjct: 60  ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDD 118

Query: 237 LGLKDITALLLE 248
             +K +  L  +
Sbjct: 119 ESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 69.8 bits (172), Expect = 1e-14
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 22/112 (19%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
           N K   G +PLH A   G   VV++L++  A                       + ++ L
Sbjct: 37  NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-------NTT---------GYQNDSPL 80

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK 182
           H+A + G++D VK+L+  G +   + N+ G  P+        K  +  + EK
Sbjct: 81  HDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKS-LLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 59.0 bits (144), Expect = 8e-11
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG 251
            G+T LH A        VE LL         +D  GWTPLH +   G   +  LLL+   
Sbjct: 9   RGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK- 66

Query: 252 SSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHF 302
             AL+     +  + L  AA  GH  +   ++++     + V+  G   + +
Sbjct: 67  --ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 45.9 bits (110), Expect = 3e-06
 Identities = 15/85 (17%), Positives = 23/85 (27%), Gaps = 28/85 (32%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIE-----FAKKQPTAMKCCAKTAWQMLGLTNEEE 126
           N      DSPLH AAK G   +VK+L+       A                     N   
Sbjct: 70  NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV--------------------NIFG 109

Query: 127 NTALHEAVQCGNLDAVKILMEAGPN 151
              +           + +  +   +
Sbjct: 110 LRPVDYTDDESMKSLLLLPEKNESS 134

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 83.3 bits (207), Expect = 5e-19
 Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 21/165 (12%)

Query: 120 GLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKK 174
           G + E     L  A   G ++ V+ L+EAG      AN N     G  P+ +    GS +
Sbjct: 6   GSSMEPSADWLATAAARGRVEEVRALLEAG------ANPNAPNSYGRRPIQV-MMMGSAR 58

Query: 175 MVAEILEKCSSAAHDGPNGKT-ALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHH 233
           +   +L   +      P   T  +H A      D +  L      L   RD  G  P+  
Sbjct: 59  VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDL 117

Query: 234 SAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLA 278
           +  LG +D+   L    G                + A++G   + 
Sbjct: 118 AEELGHRDVARYLRAAAG------GTRGS-NHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 71.7 bits (177), Expect = 4e-15
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 31/142 (21%)

Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
            N+ G  P+      G   V ++L+        A   CA                 +H+A
Sbjct: 41  PNSYGRRPIQVMMM-GSARVAELLLLHG-----AEPNCA---------DPATLTRPVHDA 85

Query: 134 VQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCSSAAH 188
            + G LD + +L  AG      A ++     G  P+ +A   G + +   +      A  
Sbjct: 86  AREGFLDTLVVLHRAG------ARLDVRDAWGRLPVDLAEELGHRDVARYLRAA---AG- 135

Query: 189 DGPNGKTALHAAVNSYAADVVE 210
            G  G            +D+ +
Sbjct: 136 -GTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 67.5 bits (166), Expect = 1e-13
 Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 10/141 (7%)

Query: 146 MEAGPNFPYSANVN-GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSY 204
           ME        +++      L  AAARG  + V  +LE  ++       G+  +   +   
Sbjct: 1   MEPAAG----SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS 56

Query: 205 AADVVEKLLAKKRHLTRERDDCGWT-PLHHSAYLGLKDITALLLEFDGSSALILDKDRKM 263
           A  V E LL          D    T P+H +A  G  D   +L    G+   + D     
Sbjct: 57  A-RVAELLLLHGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAW-GR 112

Query: 264 TALLMAASQGHESLAGTIIAH 284
             + +A   GH  +A  + A 
Sbjct: 113 LPVDLAEELGHRDVARYLRAA 133

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 63.7 bits (156), Expect = 3e-12
 Identities = 18/108 (16%), Positives = 31/108 (28%), Gaps = 24/108 (22%)

Query: 72  IQTNAKGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
               A    P+H AA+ G    + VL    A+                  + +      +
Sbjct: 72  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLD----------------VRDAWGRLPV 115

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAE 178
             A + G+ D  + L  A           G     + AA G    + +
Sbjct: 116 DLAEELGHRDVARYLRAAA------GGTRGSNHARIDAAEGPSD-IPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 50.9 bits (123), Expect = 7e-08
 Identities = 23/159 (14%), Positives = 38/159 (23%), Gaps = 42/159 (26%)

Query: 180 LEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGL 239
           +E   +A          L  A      + V  LL    +     +  G  P+      G 
Sbjct: 1   MEP--AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMMM-GS 56

Query: 240 KDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNV 299
             +  LLL   G+     D       +  AA +G                 L   G    
Sbjct: 57  ARVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLD-----TLVV-----LHRAGA--- 102

Query: 300 LHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
                                    +D ++  G  P+ +
Sbjct: 103 ------------------R------LDVRDAWGRLPVDL 117

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 80.1 bits (199), Expect = 2e-18
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 26/123 (21%)

Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV- 176
           +++ NT LH A + G+ + VK L+  G      A+VN     G TPL++AA  G  ++V 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKG------ADVNARSKDGNTPLHLAAKNGHAEIVK 59

Query: 177 ------AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTP 230
                 A++  +         +G T  H A  +   ++V+ L AK   +   R       
Sbjct: 60  LLLAKGADVNARSK-------DGNTPEHLAKKNGHHEIVKLLDAKGADVN-ARSWGSSHH 111

Query: 231 LHH 233
            HH
Sbjct: 112 HHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 58.5 bits (143), Expect = 6e-11
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 15/100 (15%)

Query: 156 ANVNGETPLYMAAARGSKKMV-------AEILEKCSSAAHDGPNGKTALHAAVNSYAADV 208
            + +G TPL+ AA  G  + V       A++  +         +G T LH A  +  A++
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK-------DGNTPLHLAAKNGHAEI 57

Query: 209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
           V+ LLAK   +   R   G TP H +   G  +I  LL  
Sbjct: 58  VKLLLAKGADVN-ARSKDGNTPEHLAKKNGHHEIVKLLDA 96

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 55.5 bits (135), Expect = 9e-10
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 192 NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG 251
           +G T LH A  +  A+ V+KLL+K   +   R   G TPLH +A  G  +I  LLL    
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLA--- 63

Query: 252 SSALILDKDRK-MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLH 301
             A +  + +   T   +A   GH  +   + A   +  +    G  +  H
Sbjct: 64  KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD-VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 53.5 bits (130), Expect = 4e-09
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 31/100 (31%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
           NA+   G++PLH AAK G   +VK+L+   A          A+         +++ NT  
Sbjct: 36  NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-------AR---------SKDGNTPE 79

Query: 131 HEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLY 165
           H A + G+ + VK+L   G      A+VN          +
Sbjct: 80  HLAKKNGHHEIVKLLDAKG------ADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 46.2 bits (111), Expect = 1e-06
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 224 DDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGTII 282
              G TPLH++A  G  +    LL      A +  + +   T L +AA  GH  +   ++
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLS---KGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 283 AHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLH 337
           A   +  +     G    H    + H   +K L       + ++ ++   +   H
Sbjct: 63  AKGADV-NARSKDGNTPEHLAKKNGHHEIVKLLDA---KGADVNARSWGSSHHHH 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 77.8 bits (193), Expect = 1e-17
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILE 181
           +     A++ G+LD VK  +  G       +VN     G  PL+ AA  G  +++  +L 
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKG------EDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 182 KCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKD 241
           K +       +  T L +AV       V+ LL+K    T  +   G T    +    +K 
Sbjct: 62  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDNQAIKA 120

Query: 242 I 242
           +
Sbjct: 121 L 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 76.7 bits (190), Expect = 4e-17
 Identities = 34/141 (24%), Positives = 48/141 (34%), Gaps = 26/141 (18%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV 134
            +  D     A K G    VK  +          K            T E     LH A 
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVA---------KGEDVNR------TLEGGRKPLHYAA 48

Query: 135 QCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCSSAAHD 189
            CG L+ ++ L+  G      A++N       TPL  A   G    V  +L K +     
Sbjct: 49  DCGQLEILEFLLLKG------ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102

Query: 190 GPNGKTALHAAVNSYAADVVE 210
           GP+G TA  A  N     +++
Sbjct: 103 GPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 62.0 bits (152), Expect = 4e-12
 Identities = 27/127 (21%), Positives = 41/127 (32%), Gaps = 15/127 (11%)

Query: 157 NVNGETPLYMAAARGSKKMVAEILEKCSSA---AHDGPNGKTALHAAVNSYAADVVEKLL 213
               +     A   G    V + + K             G+  LH A +    +++E LL
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLE-GGRKPLHYAADCGQLEILEFLL 60

Query: 214 ---AKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAA 270
              A         D    TPL  + Y G      LLL   G+   +   D   TA     
Sbjct: 61  LKGADI----NAPDKHHITPLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGL-TAFEATD 114

Query: 271 SQGHESL 277
           +Q  ++L
Sbjct: 115 NQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 52.8 bits (128), Expect = 8e-09
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 4/114 (3%)

Query: 189 DGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
            G         A+ +   D V+  +AK   +     + G  PLH++A  G  +I   LL 
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 249 FDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHF 302
             G+     DK    T LL A  +GH S    +++   +   +    G      
Sbjct: 62  -KGADINAPDKHHI-TPLLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEA 112

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 75.9 bits (188), Expect = 9e-17
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 14/132 (10%)

Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVA 177
               +  L  A   G ++ V+ L+EAG      A+ N     G  P+ +    GS ++  
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAG------ADPNALNRFGRRPIQV-MMMGSAQVAE 61

Query: 178 EILEKCSSAAHDGPNGKT-ALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY 236
            +L   +      P   T  +H A      D +  L      L    D  G  P+  +  
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEE 120

Query: 237 LGLKDITALLLE 248
            G +DI   L  
Sbjct: 121 QGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 68.6 bits (169), Expect = 3e-14
 Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 28/147 (19%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV 134
               D+ L  AA  G+   V+ L+E A   P A               N      +   +
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLE-AGADPNA--------------LNRFGRRPIQVMM 53

Query: 135 QCGNLDAVKILMEAGPNFPYSANVN-----GET-PLYMAAARGSKKMVAEILEKCSSAAH 188
             G+    ++L+  G      A  N       T P++ AA  G    +  +    +    
Sbjct: 54  M-GSAQVAELLLLHG------AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106

Query: 189 DGPNGKTALHAAVNSYAADVVEKLLAK 215
               G+  +  A      D+   L A 
Sbjct: 107 CDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 68.2 bits (168), Expect = 5e-14
 Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 10/136 (7%)

Query: 155 SANVN-----GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVV 209
           S  ++      +  L  AAARG  + V ++LE  +        G+  +   +    A V 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVA 60

Query: 210 EKLLAKKRHLTRERDDCGWT-PLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLM 268
           E LL          D    T P+H +A  G  D   +L    G+   + D       + +
Sbjct: 61  ELLLLHGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVCDAW-GRLPVDL 117

Query: 269 AASQGHESLAGTIIAH 284
           A  QGH  +A  + A 
Sbjct: 118 AEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 20/123 (16%), Positives = 34/123 (27%), Gaps = 18/123 (14%)

Query: 222 ERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK-MTALLMAASQGHESLAGT 280
                    L  +A  G  +    LLE   + A     +R      +     G   +A  
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLE---AGADPNALNRFGRRP-IQVMMMGSAQVAEL 62

Query: 281 IIAH--YPECYDLVDNGGWNVLHFLMVSLHESKLKRLLK---DPLYKSFIDEKNEMGNTP 335
           ++ H   P C D         +H          L  L +          +D  +  G  P
Sbjct: 63  LLLHGAEPNCAD--PATLTRPVHDAAREGFLDTLVVLHRAGAR------LDVCDAWGRLP 114

Query: 336 LHI 338
           + +
Sbjct: 115 VDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 45.1 bits (108), Expect = 5e-06
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 17/81 (20%)

Query: 72  IQTNAKGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
               A    P+H AA+ G    + VL    A+                  + +      +
Sbjct: 72  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLD----------------VCDAWGRLPV 115

Query: 131 HEAVQCGNLDAVKILMEAGPN 151
             A + G+ D  + L  A  +
Sbjct: 116 DLAEEQGHRDIARYLHAATGD 136

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 75.5 bits (186), Expect = 4e-16
 Identities = 27/195 (13%), Positives = 51/195 (26%), Gaps = 40/195 (20%)

Query: 74  TNAKGD-SPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALH 131
           +NA  +   + AAA  G       L E   + +    +   K+               L 
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDK----ESVLKSNILY---------DVLR 47

Query: 132 EAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV--AEILEKCS 184
                        L+  G      A++      G T  +     G   +    E+ +   
Sbjct: 48  NNNDEARYKISMFLINKG------ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL 101

Query: 185 SA-----AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRE------RDDCGWTPLHH 233
                  A      K  +   + +Y  D  E +   K   ++       +D  G T L  
Sbjct: 102 EKGADITALYK-PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160

Query: 234 SAYLGLKDITALLLE 248
                      ++ +
Sbjct: 161 VKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 24/175 (13%), Positives = 45/175 (25%), Gaps = 18/175 (10%)

Query: 125 EENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAAR-----GSKKMVAEI 179
            E   +  A   G  +    L E G           ++ +     R        K+   +
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 180 LEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTR-----ERDDCGWTPLHHS 234
           + K +        G T           D+       K  L +              +  +
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121

Query: 235 AYLGLKDITALL----LEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAH 284
            +    D   ++    L F  S   +L KD+  +TAL              +  +
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 27/165 (16%)

Query: 192 NGKTALHAAVNSYAADVVEKLLAK--KRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF 249
           +    + AA      +   +L  K  +   +  + +  +  L ++       I+  L+  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN- 63

Query: 250 DGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNG---------GWNVL 300
            G+      K+   T        G       I      C   ++ G            V+
Sbjct: 64  KGADIKSRTKE-GTTLFFPLFQGGGND----ITGTTELCKIFLEKGADITALYKPYKIVV 118

Query: 301 HFLMVSLHESKLKRLLKDPLYKSF-------IDEKNEMGNTPLHI 338
              + +    + + +   PLYK         +  K++ G T L  
Sbjct: 119 FKNIFNYFVDENEMI---PLYKLIFSQSGLQLLIKDKWGLTALEF 160

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 21/164 (12%), Positives = 35/164 (21%), Gaps = 51/164 (31%)

Query: 78  GDSPLHAA----AKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLG----LTNEEENTA 129
             + L+          R  +   LI                     G       +E  T 
Sbjct: 38  KSNILYDVLRNNNDEARYKISMFLIN-------------------KGADIKSRTKEGTTL 78

Query: 130 LHEAVQCGNLDA------VKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAE 178
                Q G  D        KI +E G      A++       +  ++             
Sbjct: 79  FFPLFQGGGNDITGTTELCKIFLEKG------ADITALYKPYKIVVFKNIFNYFVDENEM 132

Query: 179 ILEKCSSAAHDGPN-------GKTALHAAVNSYAADVVEKLLAK 215
           I       +  G         G TAL           ++ +   
Sbjct: 133 IPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 37/247 (14%), Positives = 69/247 (27%), Gaps = 36/247 (14%)

Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
             A+       AA+ G   V+  L E A  +  AM                E   A   A
Sbjct: 124 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI-------------QAENYHAFRLA 170

Query: 134 VQCGNLDAVKILMEAGPNFPYSANVN--GETPLYMAAAR-GSKKMVAEILEKCSSAAHDG 190
            + G+L  +  L E  P    +A +          AA   G   ++  +L+     A+  
Sbjct: 171 AENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 229

Query: 191 PNGKTALHAAVNSYAADVVEKLLAKKRHL------------TRERDDCGWTPLHHSAYLG 238
            +        VN + A  V +L                   T+     G+  L +     
Sbjct: 230 IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN 289

Query: 239 LKDITALLLEFDGSSALILDKDRKM------TALLMAASQGHESLAGTIIAHYPECYDLV 292
            + +   +        +                L +A   G++     +++  P    L 
Sbjct: 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI-PSVLALT 348

Query: 293 DNGGWNV 299
               + +
Sbjct: 349 KANNYYI 355

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 73.1 bits (179), Expect = 4e-14
 Identities = 40/279 (14%), Positives = 69/279 (24%), Gaps = 45/279 (16%)

Query: 69  SLLIQTNAKGDSPLHAAAKCGRP---AVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEE 125
           S   +   K +     AA  G       + +L+         +                E
Sbjct: 83  SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLT-----SDEIVKVI----------QAE 127

Query: 126 ENTALHEAVQCGNLDAVKILMEAGPNFPYS-ANVNGETPLYMAAARGSKKMVAEILEKCS 184
              A   A + G+L  +  L E  P    +           +AA  G   ++  + E   
Sbjct: 128 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 187

Query: 185 ---SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKD 241
              +A     N      AAV     +V+  LL     L             H    G K 
Sbjct: 188 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY--------AEIHEFEYGEKY 239

Query: 242 ITALLLEFDGSSALILDKDRKMTALLMAASQGHESL--AGTIIAHYPECYDLVDNGGWNV 299
           +   +                  A  ++   G   L      +  +    +L+      +
Sbjct: 240 VNPFIARHVN------RLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVL 293

Query: 300 LHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           L  +   L    +K L                 N  L +
Sbjct: 294 LDDIRFLLSIPGIKALAP-------TATIPGDANELLRL 325

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.9 bits (176), Expect = 9e-14
 Identities = 40/251 (15%), Positives = 76/251 (30%), Gaps = 49/251 (19%)

Query: 60  VEQILEICPSLLIQT-NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQM 118
           + ++ E+ P+ ++    A+       AA+ G   V+  L E A  + TAM          
Sbjct: 144 LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM---------- 193

Query: 119 LGLTNEEENTALHE-AVQCGNLDAVKILMEAGPNFPYS-----------------ANVNG 160
                 E   A    AV  G+ + +  L++      Y+                  +VN 
Sbjct: 194 ---IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR 250

Query: 161 ETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLT 220
              ++ A    +   V +++ K      +   G   L   +      +++ +        
Sbjct: 251 LKEMHDAFKLSNPDGVFDLVTK-----SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPG 305

Query: 221 RE-------RDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQG 273
            +               L  +  LG +   ALLL      AL      K     +  + G
Sbjct: 306 IKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALT-----KANNYYINETGG 360

Query: 274 HESLAGTIIAH 284
              L    + H
Sbjct: 361 RLDLRAVALEH 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 32/248 (12%), Positives = 66/248 (26%), Gaps = 23/248 (9%)

Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILE 181
           T   E       +   + +     + +  +      +  E   ++AA  G    + + L 
Sbjct: 57  TKNMEQVRQLLCLYYAHYNRNAKQLWSDAH---KKGIKSEVICFVAAITGCSSAL-DTLC 112

Query: 182 KCSSAAHD----GPNGKTALH-AAVNSYAADVVEKLLAKKRHLTRE-RDDCGWTPLHHSA 235
              ++             A   AA N +   V+ +L                +     +A
Sbjct: 113 LLLTSDEIVKVIQAENYQAFRLAAENGHL-HVLNRLCELAPTEIMAMIQAENYHAFRLAA 171

Query: 236 YLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQ-GHESLAGTIIAHYPECYDLVDN 294
             G   +   L E   + A  + +     A   AA   GH ++   ++           +
Sbjct: 172 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH 231

Query: 295 GGWNVLHFLMVSLHESKLKRL--LKDPLYKSFID--------EKNEMGNTPLHILATLSA 344
                    +       + RL  + D    S  D         +   G   L  L   + 
Sbjct: 232 EFEYG-EKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRND 290

Query: 345 RTCNEIVR 352
               + +R
Sbjct: 291 EVLLDDIR 298

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 15/156 (9%)

Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAA-RGSKKMVAEILE 181
               +      +     +A+ I +    N      V     LY A   R +K++ ++  +
Sbjct: 31  QHFISANELSLMTLSYKEAIHIFLPGTKNM---EQVRQLLCLYYAHYNRNAKQLWSDAHK 87

Query: 182 KCSSAAHDGPNGKTALH-AAVNSYA--ADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG 238
           K       G   +     AA+   +   D +  LL     +   + +  +     +A  G
Sbjct: 88  K-------GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE-NYQAFRLAAENG 139

Query: 239 LKDITALLLEFDGSSALILDKDRKMTALLMAASQGH 274
              +   L E   +  + + +     A  +AA  GH
Sbjct: 140 HLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 175

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 64.9 bits (159), Expect = 4e-13
 Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 31/134 (23%)

Query: 85  AAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVK 143
            +          L+   +                       +    L EA + G  D V+
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM-------------------GSDLGKKLLEAARAGQDDEVR 41

Query: 144 ILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALH 198
           ILM  G      A+V      G TPL++AA  G  ++V  +LE  +        GKTA  
Sbjct: 42  ILMANG------ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD 95

Query: 199 AAVNSYAADVVEKL 212
            ++++   D+ E L
Sbjct: 96  ISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 63.7 bits (156), Expect = 9e-13
 Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 23/123 (18%)

Query: 133 AVQCGNLDAVKILMEAGPNFPYSANVN--GETPLYMAAARGSKKMV-------AEILEKC 183
                +      L+  G      +++       L  AA  G    V       A++  K 
Sbjct: 1   GSSHHHHHHSSGLVPRG------SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKD 54

Query: 184 SSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDIT 243
                   NG T LH A  +   +VV+ LL     +   +D  G T    S   G +D+ 
Sbjct: 55  K-------NGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKTAFDISIDNGNEDLA 106

Query: 244 ALL 246
            +L
Sbjct: 107 EIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 61.1 bits (149), Expect = 7e-12
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 18/103 (17%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
            +     L  AA+ G+   V++L+   A          AK         ++  +T LH A
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVA-------AK---------DKNGSTPLHLA 64

Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMV 176
            + G+L+ VK+L+EAG +   + +  G+T   ++   G++ + 
Sbjct: 65  ARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLA 106

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 9/110 (8%)

Query: 207 DVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK-MTA 265
                L+ +  H+           L  +A  G  D   +L+    + A +  KD+   T 
Sbjct: 8   HHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMA---NGADVAAKDKNGSTP 60

Query: 266 LLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRL 315
           L +AA  GH  +   ++    +     D  G       + + +E   + L
Sbjct: 61  LHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 62.8 bits (154), Expect = 1e-12
 Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 31/117 (26%)

Query: 78  GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC 136
           G +PLH AA+ G   VVK+L+E  A          AK         ++   T LH A + 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVN-------AK---------DKNGRTPLHLAARN 45

Query: 137 GNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAEILEKCSSAAH 188
           G+L+ VK+L+EAG      A+VN     G TPL++AA  G  + V ++L    + A+
Sbjct: 46  GHLEVVKLLLEAG------ADVNAKDKNGRTPLHLAARNGHLE-VVKLL--LEAGAY 93

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 62.0 bits (152), Expect = 2e-12
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 25/101 (24%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMV----- 176
            T LH A + G+L+ VK+L+EAG      A+VN     G TPL++AA  G  ++V     
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAG------ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 177 --AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAK 215
             A++  K         NG+T LH A  +   +VV+ LL  
Sbjct: 57  AGADVNAK-------DKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 52.0 bits (126), Expect = 8e-09
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 17/90 (18%)

Query: 192 NGKTALHAAVNSYAADVVEKLL---AKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
           NG+T LH A  +   +VV+ LL   A        +D  G TPLH +A  G  ++  LLLE
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN----AKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 249 FDGSSALILDKDRK----MTALLMAASQGH 274
             G+     D + K     T L +AA  GH
Sbjct: 57  -AGA-----DVNAKDKNGRTPLHLAARNGH 80

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 46.6 bits (112), Expect = 6e-07
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 20/79 (25%)

Query: 75  NAK---GDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTAL 130
           NAK   G +PLH AA+ G   VVK+L+E  A          AK         ++   T L
Sbjct: 29  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-------AK---------DKNGRTPL 72

Query: 131 HEAVQCGNLDAVKILMEAG 149
           H A + G+L+ VK+L+EAG
Sbjct: 73  HLAARNGHLEVVKLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 39/112 (34%)

Query: 227 GWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYP 286
           G TPLH +A  G  ++  LLLE  G+     DK+ + T L +AA  GH       +    
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGR-TPLHLAARNGHLE-----VVKL- 53

Query: 287 ECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
               L++ G                      D      ++ K++ G TPLH+
Sbjct: 54  ----LLEAGA---------------------D------VNAKDKNGRTPLHL 74

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 3e-10
 Identities = 82/576 (14%), Positives = 171/576 (29%), Gaps = 172/576 (29%)

Query: 23  DNLRSIVTHNN-KHTVLHVNIARQS------LKNKEGESVSTKFVEQILE---------- 65
           D  +SI++     H ++  +    +      L +K  E +  KFVE++L           
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPI 98

Query: 66  ----ICPSLLIQT------NAKGDSPLHAAAKCGRPAVVKVLIEFAKK-QPTA------M 108
                 PS++ +           D+ + A     R      L +   + +P        +
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 109 KCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAA 168
               KT      +  +     L   VQC     +           +  N+          
Sbjct: 159 LGSGKTW-----VALD---VCLSYKVQCKMDFKI-----------FWLNL---------- 189

Query: 169 ARGSKKMVAEILEKCSSAAHD-GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCG 227
              +      +LE      +   PN  +    + N      +  + A+ R L + +    
Sbjct: 190 --KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK--LRIHSIQAELRRLLKSKP--- 242

Query: 228 WTPLHHSAYLGLKDI-TALLLE-FD-GSSALILDKDRKMTALLMAASQGHESL------- 277
               + +  L L ++  A     F+     L+  + +++T  L AA+  H SL       
Sbjct: 243 ----YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 278 ----AGTIIAHYPEC--YDL---VDNGGWNVLHFLMV--SLHE-------------SKLK 313
                 +++  Y +C   DL   V     N     ++  S+ +              KL 
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTT--NPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 314 RLLK------DP-----LYKSF-IDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQA 361
            +++      +P     ++    +   +   + P  +L+ +        V  +       
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTILLSLIWFDVIKSDVMVV----VNK 410

Query: 362 VNKKKISVKHIE--LYGCPELQGEIQGLSEN--------IGRGQYPKGVVKLGQDKSHSF 411
           ++K  +  K  +      P +  E++   EN        +     PK       D     
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-----DSDDLI 465

Query: 412 VKFLDEEVTGMENASVSHLVVAALTATVTFAAALTLLGGNKGDNEDGPNRGSAIFAKNAA 471
             +LD           SH+                L      +          +F  +  
Sbjct: 466 PPYLD-------QYFYSHI-------------GHHLKNIEHPERMTLFRM---VFL-DFR 501

Query: 472 F-QAFIISDAIAMVLSLFAAFVHFILSLKLFRKFIF 506
           F +  I  D+ A   S   + ++ +  LK ++ +I 
Sbjct: 502 FLEQKIRHDSTAWNAS--GSILNTLQQLKFYKPYIC 535

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 6e-08
 Identities = 56/361 (15%), Positives = 117/361 (32%), Gaps = 80/361 (22%)

Query: 14  IEPFNGIAKDNLRSIVTHNNK--------HTVLHVNI--ARQSLKNKEGESVSTKFVEQI 63
              FN     + + ++T   K         T  H+++     +L   E +S+  K+++  
Sbjct: 259 WNAFNL----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 64  LEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTN 123
            +  P  ++ TN     P            + ++ E  +             W+   +  
Sbjct: 315 PQDLPREVLTTN-----PRR----------LSIIAESIRDGLATWD-----NWKH--VNC 352

Query: 124 EEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKC 183
           ++  T +  ++        + + +    FP SA++     L +      K  V  ++ K 
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLIWFDVIKSDVMVVVNKL 411

Query: 184 ---SSAAHDGPNGKTALHA--------AVNSYAADVVEKLLAKKRHLTRERDDCGWTPLH 232
              S           ++ +          N YA   + + +    ++ +  D     P +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYA---LHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 233 HSAY----LG--LKDITALLLEFDGSSALILD------KDRKMTALLMAASQGHESLA-- 278
              Y    +G  LK+I            + LD      K R  +    A+     +L   
Sbjct: 469 LDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 279 ----GTIIAHYPECYDLVDNGGWNVLHFLM---VSLHESKLKRLLKDPL---YKSFIDEK 328
                 I  + P+   LV+     +L FL     +L  SK   LL+  L    ++  +E 
Sbjct: 528 KFYKPYICDNDPKYERLVN----AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583

Query: 329 N 329
           +
Sbjct: 584 H 584

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.8 bits (129), Expect = 3e-08
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 21/129 (16%)

Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
            +   ++ LH A +      + ++                     L     + +TALH  
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIV------------DFLVQNSGNLDKQTGKGSTALHYC 212

Query: 134 VQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG 193
               N + +K+L+    +    AN +GETPL +A     +    E+L +  S       G
Sbjct: 213 CLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEH-CEELLTQALS-------G 263

Query: 194 KTALHAAVN 202
           +   H  V 
Sbjct: 264 RFNSHVHVE 272

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 180 LEKCSSAAHDGPNGKTALHAAV---NSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY 236
           L +    A+     +TALH AV   +  +  +V+ L+    +L + +   G T LH+   
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-QTGKGSTALHYCCL 214

Query: 237 LGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLA 278
               +   LLL    +S  I ++  + T L +A    HE   
Sbjct: 215 TDNAECLKLLLRG-KASIEIANESGE-TPLDIAKRLKHEHCE 254

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.9 bits (111), Expect = 7e-06
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 122 TNEEENTALHEAVQCGNLDAVKI---LMEAGPNFPYSANVNGETPLYMAAARGSKKMVAE 178
            +E + TALH AV+  +  ++ I   L++   N        G T L+      + + +  
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTALHYCCLTDNAECLKL 223

Query: 179 ILE-KCSSAAHDGPNGKTALHAAVNSYAADVVEKLL 213
           +L  K S    +  +G+T L  A         E L 
Sbjct: 224 LLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.5 bits (110), Expect = 8e-06
 Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 24/137 (17%)

Query: 24  NLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLH 83
            +     H    T LH  +A +S      +  S   V+ +++   +L  QT  KG + LH
Sbjct: 159 KIPLANGHEPDETALH--LAVRS-----VDRTSLHIVDFLVQNSGNLDKQT-GKGSTALH 210

Query: 84  AAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVK 143
                     +K+L+          +  A        + NE   T L  A +  +    +
Sbjct: 211 YCCLTDNAECLKLLL----------RGKASI-----EIANESGETPLDIAKRLKHEHCEE 255

Query: 144 ILMEAGPN-FPYSANVN 159
           +L +A    F    +V 
Sbjct: 256 LLTQALSGRFNSHVHVE 272

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 101 AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNG 160
               PT     A  A        ++  T L +A    +L A + L++ G N    A+  G
Sbjct: 210 PPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAG 268

Query: 161 ETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLL 213
             PL+ A   G   +    L++ +        G+  L  A+ +  AD+V  L 
Sbjct: 269 RGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 25/171 (14%), Positives = 46/171 (26%), Gaps = 2/171 (1%)

Query: 79  DSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGN 138
           +       +        V  + + +                  +          +    +
Sbjct: 153 EIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPS 212

Query: 139 LDAVKILMEAGPNFPYS-ANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTAL 197
           L  +   +  G +  +     +  TPL  A A  S      +L+  ++       G+  L
Sbjct: 213 LPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPL 272

Query: 198 HAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
           H A       +   L  K+      RD  G  PL  +      DI  LL  
Sbjct: 273 HHATILGHTGLA-CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 15/79 (18%)

Query: 73  QTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHE 132
           Q ++ G  PLH A   G   +  + +                    LG  + E    L  
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFL---------------KRGADLGARDSEGRDPLTI 307

Query: 133 AVQCGNLDAVKILMEAGPN 151
           A++  N D V +L  A   
Sbjct: 308 AMETANADIVTLLRLAKMR 326

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 14/119 (11%)

Query: 67  CPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEE 126
            P       A  +  LH A K    A +  L++F       ++       +       + 
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASL-PLVDFI------IQNGGHLDAK-----AADG 226

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSS 185
           NTALH A      D +K+L++       + N  GET L +A  +  K+   E+LE+  +
Sbjct: 227 NTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECE-ELLEQAQA 283

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 177 AEILEKCSSAAHDGPNGKTALHAAVNSYAAD---VVEKLLAKKRHLTRERDDCGWTPLHH 233
            +  +         P  +  LH AV         +V+ ++    HL   +   G T LH+
Sbjct: 175 QDFGQPLPGPDAQAP-EELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHY 232

Query: 234 SAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLA 278
           +A     D   LLL+   +    +++  + TAL +A  + H+   
Sbjct: 233 AALYNQPDCLKLLLKG-RALVGTVNEAGE-TALDIARKKHHKECE 275

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 22/89 (24%)

Query: 70  LLIQ-------TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLT 122
            +IQ         A G++ LH AA   +P  +K+L++                    G  
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV---------------GTV 255

Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPN 151
           NE   TAL  A +  + +  ++L +A   
Sbjct: 256 NEAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 34/145 (23%), Positives = 51/145 (35%), Gaps = 9/145 (6%)

Query: 112 AKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAG-----PNFPYSANVNGETPLYM 166
           AK            E   L  A+   +L +V      G     P     A    E  L++
Sbjct: 137 AKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHL 196

Query: 167 AAARGSKK---MVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRER 223
           A    ++    +V  I++          +G TALH A      D + KLL K R L    
Sbjct: 197 AVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL-KLLLKGRALVGTV 255

Query: 224 DDCGWTPLHHSAYLGLKDITALLLE 248
           ++ G T L  +     K+   LL +
Sbjct: 256 NEAGETALDIARKKHHKECEELLEQ 280

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	525
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.98
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.3e-55  Score=445.11  Aligned_cols=355  Identities=25%  Similarity=0.331  Sum_probs=252.0

Q ss_pred             ChHHHHHHHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcH
Q 009805            2 EPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSP   81 (525)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tp   81 (525)
                      .++||.||..|+.++|++|+++|++++..+..|.||||+|+..       |+.+++++|++.    +..++.++..|.||
T Consensus        15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~-------g~~~~v~~Ll~~----g~~~~~~~~~g~t~   83 (437)
T 1n11_A           15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-------GHTEVAKYLLQN----KAKVNAKAKDDQTP   83 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH-------TCHHHHHHHHHH----TCCSSCCCTTSCCH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-------CCHHHHHHHHhC----CCCCCCCCCCCCCH
Confidence            3689999999999999999999999988988999999999999       999999999874    66778899999999


Q ss_pred             HHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCc
Q 009805           82 LHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGE  161 (525)
Q Consensus        82 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  161 (525)
                      ||+|+..|+.++|++|++.+++               ++..+..|.||||+|+..|+.+++++|++++.+.. ..+..|.
T Consensus        84 L~~A~~~g~~~~v~~Ll~~ga~---------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~  147 (437)
T 1n11_A           84 LHCAARIGHTNMVKLLLENNAN---------------PNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGF  147 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC---------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSC
T ss_pred             HHHHHHCCCHHHHHHHHhCCCC---------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCC
Confidence            9999999999999999999987               44556666777777777777777777776666654 4455666


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChh
Q 009805          162 TPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKD  241 (525)
Q Consensus       162 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~  241 (525)
                      ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+..|+.+
T Consensus       148 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~  226 (437)
T 1n11_A          148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVE  226 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHH
Confidence            777777777777777777776666666666666777777776667777766666665 4555666666666666666666


Q ss_pred             HHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccc
Q 009805          242 ITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLY  321 (525)
Q Consensus       242 ~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~  321 (525)
                      ++++|++++.+. +..+. .|.||||+|+..|+.+++++|++++++ .+..|..|+||||+|+..++.++++.|++.   
T Consensus       227 ~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---  300 (437)
T 1n11_A          227 VARSLLQYGGSA-NAESV-QGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH---  300 (437)
T ss_dssp             HHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH---
T ss_pred             HHHHHHHcCCCC-CCCCC-CCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---
Confidence            666666666654 22232 466666666666666666666666665 455666666666666666666666666653   


Q ss_pred             cccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHhccCCChHHHHhhcCCCccchhhhHHHHhhcCCCC
Q 009805          322 KSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVNKKKISVKHIELYGCPELQGEIQGLSENIGRGQYP  397 (525)
Q Consensus       322 ~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~~~~~  397 (525)
                      +.+++.+|..|+||||+|+..+...+ +.|++  .++|++.+|..|.||||+|...+     ..+.+..+++.+..|
T Consensus       301 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~gad~n~~~~~g~t~L~~A~~~g-----~~~iv~~Ll~~ga~~  370 (437)
T 1n11_A          301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ--HQADVNAKTKLGYSPLHQAAQQG-----HTDIVTLLLKNGASP  370 (437)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTT-----CHHHHHHHHHTTCCS
T ss_pred             CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHh--cCCCCCCCCCCCCCHHHHHHHCC-----hHHHHHHHHHCcCCC
Confidence            33466666666666666666664444 55555  56666666666666666666432     444444455544443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-54  Score=440.12  Aligned_cols=340  Identities=24%  Similarity=0.281  Sum_probs=316.3

Q ss_pred             ChHHHHHHHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcH
Q 009805            2 EPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSP   81 (525)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tp   81 (525)
                      .++||.|+..|+.+++++|+++|.+.+.++.+|.||||+|+..       |+.+++++|++.    +.+++..+..|.||
T Consensus        48 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-------g~~~~v~~Ll~~----ga~~~~~~~~g~t~  116 (437)
T 1n11_A           48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI-------GHTNMVKLLLEN----NANPNLATTAGHTP  116 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHH-------TCHHHHHHHHHH----TCCTTCCCTTCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHC-------CCHHHHHHHHhC----CCCCCCCCCCCCcH
Confidence            4689999999999999999999999988998999999999999       999999999874    66778889999999


Q ss_pred             HHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCc
Q 009805           82 LHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGE  161 (525)
Q Consensus        82 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  161 (525)
                      ||+|+..|+.+++++|++.+.+               .+..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.
T Consensus       117 L~~A~~~g~~~~v~~Ll~~~~~---------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~  180 (437)
T 1n11_A          117 LHIAAREGHVETVLALLEKEAS---------------QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGL  180 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC---------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCC---------------CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCC
Confidence            9999999999999999999876               45678899999999999999999999999999976 6788999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChh
Q 009805          162 TPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKD  241 (525)
Q Consensus       162 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~  241 (525)
                      ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.+ .+..+..|.||||+|+..|+.+
T Consensus       181 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~  259 (437)
T 1n11_A          181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAE  259 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHH
Confidence            999999999999999999999999999999999999999999999999999999988 6888999999999999999999


Q ss_pred             HHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccc
Q 009805          242 ITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLY  321 (525)
Q Consensus       242 ~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~  321 (525)
                      ++++|++++.+. ...+. .|.||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+.+++.+++++|++.   
T Consensus       260 ~v~~Ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---  333 (437)
T 1n11_A          260 MVALLLSKQANG-NLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQH---  333 (437)
T ss_dssp             HHHHHHTTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHT---
T ss_pred             HHHHHHhcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhc---
Confidence            999999999887 44444 799999999999999999999999988 788999999999999999999999999985   


Q ss_pred             cccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHhccCCChHHHHhhcC
Q 009805          322 KSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVNKKKISVKHIELYGC  377 (525)
Q Consensus       322 ~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n~~g~t~l~~a~~~~  377 (525)
                      ++++|.+|..|+||||+|+..+...+ ..|++  .|+|++.+|.+|+||+++|.+.+
T Consensus       334 gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~--~ga~~~~~~~~g~t~l~~A~~~g  388 (437)
T 1n11_A          334 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK--NGASPNEVSSDGTTPLAIAKRLG  388 (437)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCSCCCCSSSCCHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH--CcCCCCCCCCCCCCHHHHHHHcC
Confidence            45699999999999999999987666 77777  89999999999999999999654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.9e-43  Score=342.27  Aligned_cols=289  Identities=17%  Similarity=0.188  Sum_probs=228.0

Q ss_pred             CCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCC-CCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhh
Q 009805           33 NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNA-KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCC  111 (525)
Q Consensus        33 ~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  111 (525)
                      +|+|+||.|+++       |+.++|++|++.    +.+++.++. .|.||||+|+..|+.++|++|+++|++        
T Consensus        24 ~~~t~L~~Av~~-------g~~~~V~~LL~~----Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~--------   84 (337)
T 4g8k_A           24 EDNHLLIKAVQN-------EDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD--------   84 (337)
T ss_dssp             HHHHHHHHHHHT-------TCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--------
T ss_pred             CCChHHHHHHHc-------CCHHHHHHHHHC----CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc--------
Confidence            567888888888       888888888764    566666654 488888888888888888888888877        


Q ss_pred             hhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCC--
Q 009805          112 AKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD--  189 (525)
Q Consensus       112 ~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~--  189 (525)
                             ++.++..+.++++.++..+...++..+++.+++++ ..+..|.||||+|+..|+.+++++|+++|++++..  
T Consensus        85 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~  156 (337)
T 4g8k_A           85 -------PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK  156 (337)
T ss_dssp             -------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCC
T ss_pred             -------hhhhccCCCchhHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhc
Confidence                   55678888888888888888888888888888876 67788888888888888888888888888777643  


Q ss_pred             --------CCCCCcHHHHHHHcCCHHHHHHHHHh-cCcCcccCCCCCCcHHHHHHHcCC----hhHHHHHhhcCCCcchh
Q 009805          190 --------GPNGKTALHAAVNSYAADVVEKLLAK-KRHLTRERDDCGWTPLHHSAYLGL----KDITALLLEFDGSSALI  256 (525)
Q Consensus       190 --------~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~  256 (525)
                              +..|.||||+|+..|+.+++++|+++ +.+ ++.+|..|.||++.++..+.    .+++++|+++|+++ +.
T Consensus       157 ~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~  234 (337)
T 4g8k_A          157 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NV  234 (337)
T ss_dssp             CC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TC
T ss_pred             cccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CC
Confidence                    44688889888888888888888865 555 67888888888888776554    35788888888876 44


Q ss_pred             cccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHH
Q 009805          257 LDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPL  336 (525)
Q Consensus       257 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~L  336 (525)
                      .+. .|.||||+|+..|+.++++.|++.....++.+|.+|+||||+|++.|+.+++++|++.+   +++|     +.|||
T Consensus       235 ~d~-~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G---Ad~n-----~~~~L  305 (337)
T 4g8k_A          235 RGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG---ASTD-----CGDLV  305 (337)
T ss_dssp             CCG-GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS---CSST-----TCCHH
T ss_pred             cCC-CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCC-----CCCHH
Confidence            444 68889999999999888888888654447888888999999999999988888888853   3344     44689


Q ss_pred             HHHHhcCchhH-HHHHHHhCCCChHH
Q 009805          337 HILATLSARTC-NEIVRQIGKGDTQA  361 (525)
Q Consensus       337 h~A~~~~~~~~-~~ll~~~~~~d~~~  361 (525)
                      |+|++.+...+ +.|++  .|+|+|.
T Consensus       306 ~~A~~~~~~~iv~~Ll~--~GA~~d~  329 (337)
T 4g8k_A          306 MTARRNYDHSLVKVLLS--HGAKEDF  329 (337)
T ss_dssp             HHHHHTTCHHHHHHHHH--TTCCC--
T ss_pred             HHHHHcCCHHHHHHHHH--CcCCCCC
Confidence            99888876555 77777  6666654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2e-42  Score=338.49  Aligned_cols=294  Identities=20%  Similarity=0.204  Sum_probs=253.8

Q ss_pred             cCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccC-CCChHhHHHHHcCCHHHHHHHHhcCCCC
Q 009805           74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNE-EENTALHEAVQCGNLDAVKILMEAGPNF  152 (525)
Q Consensus        74 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  152 (525)
                      .+.+|.||||.|++.|+.++|++||+.|++               ++.++. .|.||||+|+..|+.++|++|+++|+++
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gad---------------vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~   85 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGAN---------------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP   85 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTCC---------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCC---------------CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch
Confidence            445678999999999999999999999988               555654 5999999999999999999999999998


Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCc---------ccC
Q 009805          153 PYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLT---------RER  223 (525)
Q Consensus       153 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~---------~~~  223 (525)
                      + ..+..+.+|++.++..+...++..+++.+++++..|..|.||||+|+..++.+++++|++.+++..         ...
T Consensus        86 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~  164 (337)
T 4g8k_A           86 V-LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL  164 (337)
T ss_dssp             T-CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----C
T ss_pred             h-hhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccc
Confidence            7 678899999999999999999999999999999999999999999999999999999999987742         234


Q ss_pred             CCCCCcHHHHHHHcCChhHHHHHhhc-CCCcchhcccCCCCcHHHHHHhcCC----HHHHHHHHhhCCCccccccCCCCc
Q 009805          224 DDCGWTPLHHSAYLGLKDITALLLEF-DGSSALILDKDRKMTALLMAASQGH----ESLAGTIIAHYPECYDLVDNGGWN  298 (525)
Q Consensus       224 d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t  298 (525)
                      +..|.||||+|+..|+.+++++|+++ |.++ +..+. .|.||+|.++..+.    ..++++|++++++ ++.+|..|+|
T Consensus       165 ~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~-~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t  241 (337)
T 4g8k_A          165 RKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKT  241 (337)
T ss_dssp             TTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCT-TSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCC
T ss_pred             cCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCC-CCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCC
Confidence            56789999999999999999999964 6665 55555 79999998886554    4688999999998 7889999999


Q ss_pred             hhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHhccCCChHHHHhhcC
Q 009805          299 VLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVNKKKISVKHIELYGC  377 (525)
Q Consensus       299 ~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n~~g~t~l~~a~~~~  377 (525)
                      |||+|+..++.++++.|++.  .+.++|.+|.+|+||||+|++.|...+ +.|++  .|+|++.     .+||++|.+.+
T Consensus       242 ~L~~a~~~~~~~~v~~Ll~~--~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~--~GAd~n~-----~~~L~~A~~~~  312 (337)
T 4g8k_A          242 PLILAVEKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLLAVELKLKKIAELLCK--RGASTDC-----GDLVMTARRNY  312 (337)
T ss_dssp             HHHHHHHTTCHHHHHHHHTS--TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT--TSCSSTT-----CCHHHHHHHTT
T ss_pred             HHHHHHHhhhhHHHHHHHHh--cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCC-----CCHHHHHHHcC
Confidence            99999999999999999874  346799999999999999999997766 77777  7887754     57999999654


Q ss_pred             CCccchhhhHHHHhhcCCCCCcc
Q 009805          378 PELQGEIQGLSENIGRGQYPKGV  400 (525)
Q Consensus       378 ~~~~~~~~~~~~~l~~~~~~~~~  400 (525)
                           ..+.+..+++.|..|...
T Consensus       313 -----~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          313 -----DHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             -----CHHHHHHHHHTTCCC---
T ss_pred             -----CHHHHHHHHHCcCCCCCC
Confidence                 677888899998776543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.7e-43  Score=346.59  Aligned_cols=308  Identities=16%  Similarity=0.169  Sum_probs=262.2

Q ss_pred             hhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHH
Q 009805           20 IAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIE   99 (525)
Q Consensus        20 ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~   99 (525)
                      +.+.+.+...++..+.++||.|+..       |+.+.++.++   ...+..++.+|..|.||||+|+..|+.++|++|++
T Consensus        10 l~~~~~~~~~~~~~~~~~L~~A~~~-------g~~~~v~~ll---~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~   79 (351)
T 3utm_A           10 LADPSAKAVLTGEYKKDELLEAARS-------GNEEKLMALL---TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ   79 (351)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHH-------TCHHHHHHHC---CTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCCceeeeeeccccchhHHHHHHc-------CCHHHHHHHH---HhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4444566666676889999999999       9999999884   45677788899999999999999999999999999


Q ss_pred             hhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHH
Q 009805          100 FAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEI  179 (525)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  179 (525)
                      .+.+               ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|
T Consensus        80 ~g~~---------------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~L  143 (351)
T 3utm_A           80 HGAD---------------VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLL  143 (351)
T ss_dssp             TTCC---------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCC---------------CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9887               66789999999999999999999999999999987 6788999999999999999999999


Q ss_pred             HHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhccc
Q 009805          180 LEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDK  259 (525)
Q Consensus       180 l~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  259 (525)
                      +++|++++..+..|.+|+++|+..+..+.+.+....             .++..++..+..+.++.++...... ...+ 
T Consensus       144 l~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-  208 (351)
T 3utm_A          144 LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG-------------HSLLQAAREADLAKVKKTLALEIIN-FKQP-  208 (351)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTCCTT-CCCT-
T ss_pred             HHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcc-------------cHHHHHHHhccHHHHHHHHHhhccc-ccCC-
Confidence            999999999999999999999888777777765542             4577788888888888888765543 2223 


Q ss_pred             CCCCcHHHHHHhc---CCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHH
Q 009805          260 DRKMTALLMAASQ---GHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPL  336 (525)
Q Consensus       260 ~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~L  336 (525)
                      ..|.||||+|+..   +..+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|++.   ++++|.+|..|+|||
T Consensus       209 ~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~n~~d~~g~t~L  284 (351)
T 3utm_A          209 QSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKH---GAKMNALDSLGQTAL  284 (351)
T ss_dssp             TTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHH
Confidence            3688999999988   557899999999888 678889999999999999999999999984   456888999999999


Q ss_pred             HHHHhcCchhH-HHHHHHhCCCChHHHhccCCChHHHHh
Q 009805          337 HILATLSARTC-NEIVRQIGKGDTQAVNKKKISVKHIEL  374 (525)
Q Consensus       337 h~A~~~~~~~~-~~ll~~~~~~d~~~~n~~g~t~l~~a~  374 (525)
                      |+|+..+...+ ..|++  .|+|++.+|..|+||+++|.
T Consensus       285 ~~A~~~~~~~~v~~Ll~--~gad~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          285 HRAALAGHLQTCRLLLS--YGSDPSIISLQGFTAAQMGN  321 (351)
T ss_dssp             HHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHSC
T ss_pred             HHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCChhhhhh
Confidence            99999886665 77777  78899999999999999985

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=6.2e-42  Score=336.84  Aligned_cols=320  Identities=20%  Similarity=0.174  Sum_probs=263.6

Q ss_pred             hHHHHHHHcCCcchhhhhhhh-ccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcH
Q 009805            3 PKLYEAATNGEIEPFNGIAKD-NLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSP   81 (525)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tp   81 (525)
                      ++|+.||+.|+.+.+++++.. +.+.+.++..|.||||+|+..       |+.+++++|++.    +.+++.+|..|.||
T Consensus        26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~-------g~~~~v~~Ll~~----g~~~~~~~~~g~t~   94 (351)
T 3utm_A           26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGY-------NRVRIVQLLLQH----GADVHAKDKGGLVP   94 (351)
T ss_dssp             HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHT-------TCHHHHHHHHHT----TCCTTCCCTTCCCH
T ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc-------CCHHHHHHHHHc----CCCCCccCCCCCcH
Confidence            689999999999999999886 888888888999999999999       999999999773    67788899999999


Q ss_pred             HHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCc
Q 009805           82 LHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGE  161 (525)
Q Consensus        82 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  161 (525)
                      ||+|+..|+.+++++|++.+++               ++..|..|.||||+|+..|+.+++++|+++|+++. ..+..|.
T Consensus        95 L~~A~~~g~~~iv~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~  158 (351)
T 3utm_A           95 LHNACSYGHYEVTELLLKHGAC---------------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGK  158 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC---------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred             HHHHHHCCCHHHHHHHHHCCCC---------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCC
Confidence            9999999999999999999987               66789999999999999999999999999999976 6788999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHc---C
Q 009805          162 TPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYL---G  238 (525)
Q Consensus       162 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~---g  238 (525)
                      +|+++|+..+..+.+++....            .++..++..++.+.++.++..... ....+..|.||||+|+..   +
T Consensus       159 ~~l~~a~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~  225 (351)
T 3utm_A          159 SAVDMAPTPELRERLTYEFKG------------HSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPK  225 (351)
T ss_dssp             CHHHHCSSHHHHHHHHHHHHH------------HHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTT
T ss_pred             cchHHHhhhhhHHHHHhhhcc------------cHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCcc
Confidence            999999988888888877643            468888888999999888887665 455778899999999998   4


Q ss_pred             ChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhC
Q 009805          239 LKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKD  318 (525)
Q Consensus       239 ~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~  318 (525)
                      ..+++++|++.+.+. +..+. .|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.+++++|++.
T Consensus       226 ~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  302 (351)
T 3utm_A          226 RKQVAELLLRKGANV-NEKNK-DFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSY  302 (351)
T ss_dssp             HHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCc-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            578999999999887 44454 789999999999999999999999988 788899999999999999999999999985


Q ss_pred             ccccccccccCCCCChHHHHHHhcCchhHHHHHHHhCCCChHHHhccCCChHHHHhhc
Q 009805          319 PLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISVKHIELYG  376 (525)
Q Consensus       319 ~~~~~~in~~d~~G~T~Lh~A~~~~~~~~~~ll~~~~~~d~~~~n~~g~t~l~~a~~~  376 (525)
                         +++++.+|..|+||||+|.    ..+..++....    ......+.+++..|.+.
T Consensus       303 ---gad~~~~~~~g~tal~~a~----~~~~~~l~~~~----~~~~~~~~~~l~~A~~~  349 (351)
T 3utm_A          303 ---GSDPSIISLQGFTAAQMGN----EAVQQILSEST----PMRTSDVDYRLLEASKA  349 (351)
T ss_dssp             ---TCCTTCCCTTSCCHHHHSC----HHHHHHHHHC----------------------
T ss_pred             ---CCCCCCcCCCCCChhhhhh----HHHHHHHHhcc----ccccCcceeehhhhhcc
Confidence               4568999999999999983    33433333222    23455677777777654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.2e-42  Score=327.05  Aligned_cols=263  Identities=22%  Similarity=0.250  Sum_probs=237.1

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCc-cCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCC
Q 009805           77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLT-NEEENTALHEAVQCGNLDAVKILMEAGPNFPYS  155 (525)
Q Consensus        77 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  155 (525)
                      +|.||||.|++.|+.+++++|++.+.+               ++.. +..|.||||+|+..|+.+++++|+++|++++ .
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~   67 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGAN---------------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-L   67 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCC---------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCC---------------cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-c
Confidence            578999999999999999999999877               3444 7889999999999999999999999999976 6


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccC----------CC
Q 009805          156 ANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRER----------DD  225 (525)
Q Consensus       156 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~----------d~  225 (525)
                      .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.+. +..          +.
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~  146 (285)
T 1wdy_A           68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRK  146 (285)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhcc
Confidence            7889999999999999999999999999999999999999999999999999999999999884 444          77


Q ss_pred             CCCcHHHHHHHcCChhHHHHHhhc-CCCcchhcccCCCCcHHHHHHhcCC----HHHHHHHHhhCCCccccccCCCCchh
Q 009805          226 CGWTPLHHSAYLGLKDITALLLEF-DGSSALILDKDRKMTALLMAASQGH----ESLAGTIIAHYPECYDLVDNGGWNVL  300 (525)
Q Consensus       226 ~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~L  300 (525)
                      .|.||||+|+..|+.+++++|++. +.+. ...+. .|.||||.|+..++    .+++++|++++++ ++.+|..|+|||
T Consensus       147 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~-~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L  223 (285)
T 1wdy_A          147 GGATALMDAAEKGHVEVLKILLDEMGADV-NACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPL  223 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCC-CCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcCCCCCcHH
Confidence            899999999999999999999987 6665 44455 79999999999999    8999999999998 788999999999


Q ss_pred             HHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHh
Q 009805          301 HFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVN  363 (525)
Q Consensus       301 h~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n  363 (525)
                      |+|+..++.++++.|++.  .+.+++.+|..|+||||+|++.+...+ ..|++  .|+|++.+|
T Consensus       224 ~~A~~~~~~~~v~~Ll~~--~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~--~Ga~~~~~d  283 (285)
T 1wdy_A          224 ILAVEKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLLAVELKLKKIAELLCK--RGASTDCGD  283 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHS--SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH--HSSCSCCSS
T ss_pred             HHHHHcCCHHHHHHHHhc--cCCCccccCCCCCcHHHHHHHcCcHHHHHHHHH--cCCCCCccc
Confidence            999999999999999983  235689999999999999999987766 77888  778777665

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-41  Score=323.90  Aligned_cols=263  Identities=19%  Similarity=0.227  Sum_probs=172.1

Q ss_pred             CCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCcccccc-CCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhh
Q 009805           33 NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQT-NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCC  111 (525)
Q Consensus        33 ~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~-~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  111 (525)
                      +|.||||.|++.       |+.+++++|++   . +..++.. +..|.||||+|+..|+.+++++|++.+.+        
T Consensus         4 ~g~~~L~~A~~~-------g~~~~v~~Ll~---~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------   64 (285)
T 1wdy_A            4 EDNHLLIKAVQN-------EDVDLVQQLLE---G-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD--------   64 (285)
T ss_dssp             HHHHHHHHHHHT-------TCHHHHHHHHH---T-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--------
T ss_pred             ccchHHHHHHHc-------CCHHHHHHHHH---c-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--------
Confidence            355667777777       77777776654   2 2333333 55666777777777777777777766655        


Q ss_pred             hhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCC--
Q 009805          112 AKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD--  189 (525)
Q Consensus       112 ~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~--  189 (525)
                             ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..  
T Consensus        65 -------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  136 (285)
T 1wdy_A           65 -------PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK  136 (285)
T ss_dssp             -------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCC
T ss_pred             -------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccc
Confidence                   44556667777777777777777777777766654 45666677777777777777777777777666655  


Q ss_pred             --------CCCCCcHHHHHHHcCCHHHHHHHHHh-cCcCcccCCCCCCcHHHHHHHcCC----hhHHHHHhhcCCCcchh
Q 009805          190 --------GPNGKTALHAAVNSYAADVVEKLLAK-KRHLTRERDDCGWTPLHHSAYLGL----KDITALLLEFDGSSALI  256 (525)
Q Consensus       190 --------~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~  256 (525)
                              +..|.||||.|+..|+.+++++|++. +.+ .+..|..|.||||+|+..++    .+++++|+++|.+. +.
T Consensus       137 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~  214 (285)
T 1wdy_A          137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NV  214 (285)
T ss_dssp             CCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SC
T ss_pred             cHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CC
Confidence                    55666777777777777777777766 444 56666667777777777666    66777777766665 33


Q ss_pred             cccCCCCcHHHHHHhcCCHHHHHHHHh-hCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccC
Q 009805          257 LDKDRKMTALLMAASQGHESLAGTIIA-HYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKN  329 (525)
Q Consensus       257 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d  329 (525)
                      .+. .|.||||+|+..|+.+++++|++ .+.+ ++.+|..|+||||+|+..++.+++++|++.   +++++.+|
T Consensus       215 ~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~---Ga~~~~~d  283 (285)
T 1wdy_A          215 RGE-RGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKR---GASTDCGD  283 (285)
T ss_dssp             CCT-TSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---SSCSCCSS
T ss_pred             cCC-CCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHc---CCCCCccc
Confidence            333 56677777777777777777776 4444 566677777777777777777777777763   33455554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-42  Score=342.99  Aligned_cols=308  Identities=17%  Similarity=0.149  Sum_probs=221.8

Q ss_pred             ChHHHHHHHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcH
Q 009805            2 EPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSP   81 (525)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tp   81 (525)
                      .++|..|+..|+.+.++.+++......    .-.++++-+...       |+.+++++++.         ..++..|.||
T Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-------g~~~~~~~~~~---------~~~~~~g~t~   97 (373)
T 2fo1_E           38 QHSLLEASYDGYIKRQRNELQHYSLYP----NPQGYGNGNDFL-------GDFNHTNLQIP---------TEPEPESPIK   97 (373)
T ss_dssp             ----------------------------------------------------------------------------CCCH
T ss_pred             ccccccccCCccccchhhhhhhhcccc----CccccCCCCCcc-------ccccccccccc---------cCCCCCCccH
Confidence            467888888899998888887643321    223456667777       88888877633         2468899999


Q ss_pred             HHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCcc-CCCChHhHHHHHcCCHHHHHHHH--------hcCCCC
Q 009805           82 LHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTN-EEENTALHEAVQCGNLDAVKILM--------EAGPNF  152 (525)
Q Consensus        82 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~  152 (525)
                      ||+|+..+ .+++++|+..  +               ++.+| ..|.||||+|+..|+.+++++|+        +.|+++
T Consensus        98 L~~Aa~~~-~~~~~~L~~~--~---------------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v  159 (373)
T 2fo1_E           98 LHTEAAGS-YAITEPITRE--S---------------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV  159 (373)
T ss_dssp             HHHHHHSS-SCCCSCCSTT--T---------------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT
T ss_pred             HHHHhcCC-chHHHHhccc--c---------------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            99999955 4788777542  2               45667 78999999999999998877776        789998


Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhc---CcCcccCCCCCCc
Q 009805          153 PYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKK---RHLTRERDDCGWT  229 (525)
Q Consensus       153 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~---~~~~~~~d~~g~t  229 (525)
                      + ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+   .+ .+..|..|.|
T Consensus       160 n-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~d~~g~t  237 (373)
T 2fo1_E          160 N-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD-IEELDRNGMT  237 (373)
T ss_dssp             T-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT-TSCCCTTSCC
T ss_pred             c-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC-hhhcCCCCCC
Confidence            7 67889999999999999999999999999999999999999999999999999999999987   44 6788999999


Q ss_pred             HHHHHHHcC---ChhHHHHHhhcCCCcchh------cccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchh
Q 009805          230 PLHHSAYLG---LKDITALLLEFDGSSALI------LDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVL  300 (525)
Q Consensus       230 pL~~A~~~g---~~~~v~~Ll~~~~~~~~~------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L  300 (525)
                      |||+|+..+   +.+++++|+++|.+....      ..+..|.||||+|+..|+.+++++|+++++..++.+|..|+|||
T Consensus       238 ~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL  317 (373)
T 2fo1_E          238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI  317 (373)
T ss_dssp             HHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred             HHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHH
Confidence            999999998   899999999999887431      11237899999999999999999999998555899999999999


Q ss_pred             HHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHH
Q 009805          301 HFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVR  352 (525)
Q Consensus       301 h~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~  352 (525)
                      |+|+..|+.+++++|++.   +++++.+|..|+||||+|+..+...+ ..|++
T Consensus       318 ~~A~~~g~~~iv~~Ll~~---gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~  367 (373)
T 2fo1_E          318 MLAAQEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDR  367 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHc---CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999995   46699999999999999999997777 55554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.2e-41  Score=335.27  Aligned_cols=278  Identities=19%  Similarity=0.145  Sum_probs=226.8

Q ss_pred             HHHHHHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccC-CCCCcHHH
Q 009805            5 LYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTN-AKGDSPLH   83 (525)
Q Consensus         5 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~-~~g~tpLh   83 (525)
                      +..+...|+.+.+++++...     .+..|.||||+|+..       +. +++++|++      ..++..| ..|.||||
T Consensus        70 ~~~~~~~g~~~~~~~~~~~~-----~~~~g~t~L~~Aa~~-------~~-~~~~~L~~------~~~n~~d~~~g~t~Lh  130 (373)
T 2fo1_E           70 GNGNDFLGDFNHTNLQIPTE-----PEPESPIKLHTEAAG-------SY-AITEPITR------ESVNIIDPRHNRTVLH  130 (373)
T ss_dssp             -----------------------------CCCHHHHHHHS-------SS-CCCSCCST------TTTTTCCCSSCCCHHH
T ss_pred             CCCCCccccccccccccccC-----CCCCCccHHHHHhcC-------Cc-hHHHHhcc------ccccccCCcCCCCHHH
Confidence            34566668888888876553     344899999999988       75 67776632      3566677 78999999


Q ss_pred             HHHHcCChhHHHHHH--------HhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCC
Q 009805           84 AAAKCGRPAVVKVLI--------EFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYS  155 (525)
Q Consensus        84 ~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  155 (525)
                      +|+..|+.+++++|+        +.+++               ++.+|..|.||||+|+..|+.+++++|+++|++++ .
T Consensus       131 ~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~---------------vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~-~  194 (373)
T 2fo1_E          131 WIASNSSAEKSEDLIVHEAKECIAAGAD---------------VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-I  194 (373)
T ss_dssp             HHHCTTCCSCCTTHHHHHHHHHHHTCCC---------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-C
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhcCCC---------------CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCc-c
Confidence            999999999988887        45555               67789999999999999999999999999999987 6


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHhc---CCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHHhcCcCcc-------c
Q 009805          156 ANVNGETPLYMAAARGSKKMVAEILEKC---SSAAHDGPNGKTALHAAVNSY---AADVVEKLLAKKRHLTR-------E  222 (525)
Q Consensus       156 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~g~t~L~~A~~~~---~~~~~~~Ll~~~~~~~~-------~  222 (525)
                      .+..|.||||+|+..|+.+++++|++++   ++++..+..|.||||+|+..+   +.+++++|++.+.+...       .
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~  274 (373)
T 2fo1_E          195 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS  274 (373)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSS
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCc
Confidence            7889999999999999999999999998   799999999999999999998   89999999999988432       3


Q ss_pred             CCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHH
Q 009805          223 RDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHF  302 (525)
Q Consensus       223 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  302 (525)
                      .|..|.||||+|+..|+.+++++|++++....+..+. .|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+
T Consensus       275 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~  352 (373)
T 2fo1_E          275 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQL  352 (373)
T ss_dssp             SSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHH
T ss_pred             ccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHH
Confidence            6778999999999999999999999987333355565 799999999999999999999999998 78899999999999


Q ss_pred             HHhcCCHHHHHHHhhCc
Q 009805          303 LMVSLHESKLKRLLKDP  319 (525)
Q Consensus       303 A~~~~~~~~~~~ll~~~  319 (525)
                      |+.+++.+++++|++..
T Consensus       353 A~~~g~~~iv~~Ll~~~  369 (373)
T 2fo1_E          353 AQANNHHNIVDIFDRCR  369 (373)
T ss_dssp             HHHTTCHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHhcC
Confidence            99999999999999854

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=316.88  Aligned_cols=255  Identities=19%  Similarity=0.189  Sum_probs=185.7

Q ss_pred             CCCchhhhhhhcccccccCCchhhHHHHHHHHHh-------CCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCC
Q 009805           33 NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEI-------CPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQP  105 (525)
Q Consensus        33 ~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~-------~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  105 (525)
                      .|.|+||+|+..       |+.+.+..++.....       ....+...|..|.||||+|+..|+.+++++|++.+.+  
T Consensus        14 ~~~~~lH~Aa~~-------g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--   84 (285)
T 3d9h_A           14 LVPRGSHMASMD-------GKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA--   84 (285)
T ss_dssp             -----------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC--
T ss_pred             HHHHHHHHHhhc-------CCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC--
Confidence            899999999999       997776665432111       1223456788899999999999999999999998876  


Q ss_pred             hhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCC
Q 009805          106 TAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSS  185 (525)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  185 (525)
                                   ++.+|.+|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++
T Consensus        85 -------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  150 (285)
T 3d9h_A           85 -------------VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGAS  150 (285)
T ss_dssp             -------------SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             -------------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC
Confidence                         56688889999999999999999999999988876 6778899999999999999999999999888


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcH
Q 009805          186 AAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTA  265 (525)
Q Consensus       186 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tp  265 (525)
                      ++..+ .|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|.+..  .+. .|.||
T Consensus       151 ~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~-~g~t~  225 (285)
T 3d9h_A          151 VQPES-DLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGK-GQDSP  225 (285)
T ss_dssp             SSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCB-TTBCH
T ss_pred             CCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCC-CCCCH
Confidence            77543 488899998888888888888888887 57778888888888888888888888888877764  233 67788


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhC
Q 009805          266 LLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKD  318 (525)
Q Consensus       266 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~  318 (525)
                      ||+|+..|+.+++++|++++++ ++.+|.+|+||||+|+  ++.++++.|++.
T Consensus       226 L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~  275 (285)
T 3d9h_A          226 LHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVELVP--PESPLAQLFLER  275 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence            8888888888888888888777 6777888888888887  345677777763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.1e-40  Score=313.77  Aligned_cols=270  Identities=16%  Similarity=0.124  Sum_probs=202.6

Q ss_pred             cCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCC
Q 009805           74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFP  153 (525)
Q Consensus        74 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  153 (525)
                      ....|.|+||+|+..|+.+.+..++..+.......    ......++.+|..|.||||+|+..|+.+++++|++.|++++
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~   86 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI----RLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN   86 (285)
T ss_dssp             -------------------------------CCSE----ECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccch----hhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            34679999999999999887777776653310000    00011256689999999999999999999999999999976


Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHH
Q 009805          154 YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHH  233 (525)
Q Consensus       154 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~  233 (525)
                       ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+++. + .+..|.||||+
T Consensus        87 -~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~  163 (285)
T 3d9h_A           87 -IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHE  163 (285)
T ss_dssp             -EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHH
T ss_pred             -CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHH
Confidence             67889999999999999999999999999999999999999999999999999999999999884 3 34459999999


Q ss_pred             HHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHH
Q 009805          234 SAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLK  313 (525)
Q Consensus       234 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~  313 (525)
                      |+..|+.+++++|++++.+. ...+. .|.||||+|+..|+.+++++|++.+++ ++ .|..|+||||+|+..++.++++
T Consensus       164 A~~~g~~~~v~~Ll~~g~~~-~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~v~  239 (285)
T 3d9h_A          164 AARRGHVECVNSLIAYGGNI-DHKIS-HLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEELAC  239 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCBT-TTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999887 44455 799999999999999999999999988 44 4889999999999999999999


Q ss_pred             HHhhCccccccccccCCCCChHHHHHHhcCchhHHHHHHHhCCCCh
Q 009805          314 RLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDT  359 (525)
Q Consensus       314 ~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~~~ll~~~~~~d~  359 (525)
                      +|++.   +++++.+|.+|+||||+|+.. ...+..|+++ .++++
T Consensus       240 ~Ll~~---gad~~~~d~~g~t~l~~A~~~-~~~~~~Ll~~-~~a~l  280 (285)
T 3d9h_A          240 LLMDF---GADTQAKNAEGKRPVELVPPE-SPLAQLFLER-EGASL  280 (285)
T ss_dssp             HHHHT---TCCTTCCCTTSCCGGGGSCTT-SHHHHHHHHH-C----
T ss_pred             HHHHC---CCCCCCcCCCCCCHHHHhcCc-cHHHHHHHHh-hccCC
Confidence            99985   456999999999999999954 3444556552 34443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.4e-40  Score=327.41  Aligned_cols=261  Identities=19%  Similarity=0.165  Sum_probs=228.9

Q ss_pred             ccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCC
Q 009805           71 LIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGP  150 (525)
Q Consensus        71 l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  150 (525)
                      ....|..|.||||+|+..|+.++|++|++.+.+               ++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   77 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVS---------------PTIQNRFGCTALHLACKFGCVDTAKYLASVGE   77 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC---------------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence            355788999999999999999999999999887               67789999999999999999999999999999


Q ss_pred             CCCCCCCCCCchHHHHHHHcCCHHHHHHHHHh----cCCCCC-----------------CCCCCCcHHHHHHHcC--CHH
Q 009805          151 NFPYSANVNGETPLYMAAARGSKKMVAEILEK----CSSAAH-----------------DGPNGKTALHAAVNSY--AAD  207 (525)
Q Consensus       151 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~----~~~~~~-----------------~~~~g~t~L~~A~~~~--~~~  207 (525)
                      +..   +..|.||||+|+..|+.+++++|+++    +.+++.                 .+..|.||||+|+..|  +.+
T Consensus        78 ~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~  154 (364)
T 3ljn_A           78 VHS---LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLE  154 (364)
T ss_dssp             CCC---CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHH
T ss_pred             Ccc---ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHH
Confidence            643   45799999999999999999999999    766665                 7788999999999999  999


Q ss_pred             HHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCc----chhcccCCCCcHHHHHHhcCCHHHHHHHHh
Q 009805          208 VVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSS----ALILDKDRKMTALLMAASQGHESLAGTIIA  283 (525)
Q Consensus       208 ~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~----~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  283 (525)
                      ++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++++++.    .+..+. .|.||||+|+..|+.+++++|++
T Consensus       155 ~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~  232 (364)
T 3ljn_A          155 MIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK-QGNSHLHWAILINWEDVAMRFVE  232 (364)
T ss_dssp             HHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT-TCCCTTHHHHTTTCHHHHHHHHT
T ss_pred             HHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCC-CCCcHHHHHHHcCCHHHHHHHHH
Confidence            99999999988 6889999999999999999999999999998872    244454 79999999999999999999999


Q ss_pred             hCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCcccc---------ccccccCCCCChHHHHHHhcC-chhHHHHHH
Q 009805          284 HYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYK---------SFIDEKNEMGNTPLHILATLS-ARTCNEIVR  352 (525)
Q Consensus       284 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~---------~~in~~d~~G~T~Lh~A~~~~-~~~~~~ll~  352 (525)
                      ++++ ++.+|..|+||||+|+..++.+++++|++.+...         ......+..|+|||+.|+..+ ...+..|+.
T Consensus       233 ~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~  310 (364)
T 3ljn_A          233 MGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ  310 (364)
T ss_dssp             TTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHH
T ss_pred             cCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHH
Confidence            9999 7889999999999999999999999999864221         222336788999999999987 445566666

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.2e-40  Score=326.45  Aligned_cols=264  Identities=17%  Similarity=0.183  Sum_probs=229.5

Q ss_pred             cccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcC
Q 009805           25 LRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQ  104 (525)
Q Consensus        25 ~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  104 (525)
                      ++.+..|.+|.||||+|+..       |+.+++++|++.    +.+++.+|..|.||||+|+..|+.++|++|++.+++ 
T Consensus        11 ~~~~~~d~~g~t~L~~Aa~~-------g~~~~v~~Ll~~----g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-   78 (364)
T 3ljn_A           11 LNRIKSDDENMEKIHVAARK-------GQTDEVRRLIET----GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV-   78 (364)
T ss_dssp             -----CCHHHHHHHHHHHHH-------TCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC-
T ss_pred             CCccccCCCCCCHHHHHHHc-------CCHHHHHHHHHc----CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-
Confidence            44445666899999999999       999999999763    677888999999999999999999999999999875 


Q ss_pred             ChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhc----CCCCCC----------------CCCCCCchHH
Q 009805          105 PTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEA----GPNFPY----------------SANVNGETPL  164 (525)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~~----------------~~~~~g~tpL  164 (525)
                                      ..+.+|.||||+|+..|+.+++++|++.    |.+.+.                ..+..|.|||
T Consensus        79 ----------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  142 (364)
T 3ljn_A           79 ----------------HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTAL  142 (364)
T ss_dssp             ----------------CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHH
T ss_pred             ----------------ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHH
Confidence                            2345899999999999999999999998    665431                1566899999


Q ss_pred             HHHHHcC--CHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcC----cccCCCCCCcHHHHHHHcC
Q 009805          165 YMAAARG--SKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHL----TRERDDCGWTPLHHSAYLG  238 (525)
Q Consensus       165 ~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~----~~~~d~~g~tpL~~A~~~g  238 (525)
                      |+|+..|  +.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.+++.    .+..|..|+||||+|+..|
T Consensus       143 ~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g  222 (364)
T 3ljn_A          143 HWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN  222 (364)
T ss_dssp             HHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTT
T ss_pred             HHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcC
Confidence            9999999  999999999999999999999999999999999999999999998873    5778899999999999999


Q ss_pred             ChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCc-----------cccccCCCCchhHHHHhcC
Q 009805          239 LKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPEC-----------YDLVDNGGWNVLHFLMVSL  307 (525)
Q Consensus       239 ~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~-----------~~~~d~~g~t~Lh~A~~~~  307 (525)
                      +.+++++|+++|++. +..+. .|.||||+|+..|+.+++++|++++++.           ....+..|+++|++|+..+
T Consensus       223 ~~~~v~~Ll~~gad~-~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~  300 (364)
T 3ljn_A          223 WEDVAMRFVEMGIDV-NMEDN-EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP  300 (364)
T ss_dssp             CHHHHHHHHTTTCCT-TCCCT-TSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred             CHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhcc
Confidence            999999999999987 55555 7999999999999999999999997652           1225678999999999999


Q ss_pred             CHHHHHHHhhC
Q 009805          308 HESKLKRLLKD  318 (525)
Q Consensus       308 ~~~~~~~ll~~  318 (525)
                      +.+.+..|+..
T Consensus       301 ~~~~v~~ll~~  311 (364)
T 3ljn_A          301 SKQEVLQLLQE  311 (364)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            88888887764

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.3e-39  Score=302.24  Aligned_cols=228  Identities=21%  Similarity=0.195  Sum_probs=178.3

Q ss_pred             hcCccCCCChHhHHHHHcC-------------CHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCC
Q 009805          119 LGLTNEEENTALHEAVQCG-------------NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSS  185 (525)
Q Consensus       119 l~~~~~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  185 (525)
                      ++.+|.+|.||||+|+..|             +.+++++|++.|++++...+..|.||||+|+..|+.+++++|+++|++
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            5678999999999999987             899999999999998877789999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcH
Q 009805          186 AAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTA  265 (525)
Q Consensus       186 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tp  265 (525)
                      ++..+..|.||||+|+..++.+++++|++.++...+.++..|.||||+|+..|+.+++++|+++|.+. +..+. .|.||
T Consensus        83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~-~g~t~  160 (253)
T 1yyh_A           83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDD-LGKSA  160 (253)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCT-TSCBH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCC-CCCCH
Confidence            99999999999999999999999999999998667889999999999999999999999999999887 44454 79999


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCch
Q 009805          266 LLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSAR  345 (525)
Q Consensus       266 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~  345 (525)
                      ||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.++++.|++.   +++++.+|..|+||||+|++.|..
T Consensus       161 L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~g~~  236 (253)
T 1yyh_A          161 LHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHH  236 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCccccccCCCCHHHHHHHcCCH
Confidence            9999999999999999999998 788999999999999999999999999995   456899999999999999999988


Q ss_pred             hHHHHHH
Q 009805          346 TCNEIVR  352 (525)
Q Consensus       346 ~~~~ll~  352 (525)
                      .+..++.
T Consensus       237 ~i~~~l~  243 (253)
T 1yyh_A          237 DIVRLLD  243 (253)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8855554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.2e-39  Score=303.36  Aligned_cols=242  Identities=21%  Similarity=0.250  Sum_probs=100.6

Q ss_pred             ccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCC
Q 009805           26 RSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQP  105 (525)
Q Consensus        26 ~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  105 (525)
                      +.+.+|.+|.||||+|+..       |+.-      +                  ....+...++.+++++|++.+.+. 
T Consensus         2 dvn~~d~~g~tpL~~A~~~-------g~~~------~------------------~~~~~~~~~~~~~v~~Ll~~g~~~-   49 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCS-------GGGL------E------------------TGNSEEEEDAPAVISDFIYQGASL-   49 (253)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCCCcHHHHHHhc-------cccc------c------------------ccchhhcCCChHHHHHHHHccCCc-
Confidence            4567888999999999998       6210      0                  000133444555555555554431 


Q ss_pred             hhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcC-
Q 009805          106 TAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCS-  184 (525)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-  184 (525)
                                   ....|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++. 
T Consensus        50 -------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  115 (253)
T 1yyh_A           50 -------------HNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRAT  115 (253)
T ss_dssp             ---------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTS
T ss_pred             -------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                         12234455555555555555555555555555543 344455555555555555555555555543 


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCc
Q 009805          185 SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMT  264 (525)
Q Consensus       185 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t  264 (525)
                      +++..+..|.||||+|+..++.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|+++|++. +..+. .|.|
T Consensus       116 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~t  192 (253)
T 1yyh_A          116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNN-REET  192 (253)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCC
T ss_pred             CccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCC
Confidence            4455555555555555555555555555555544 3444555555555555555555555555555544 22222 4555


Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhh
Q 009805          265 ALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLK  317 (525)
Q Consensus       265 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~  317 (525)
                      |||+|+..|+.+++++|++++++ ++.+|..|+||||+|+++|+.+++++|..
T Consensus       193 pL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~  244 (253)
T 1yyh_A          193 PLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDL  244 (253)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCC-ccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence            55555555555555555555555 44555555555555555555555555544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3e-38  Score=292.73  Aligned_cols=225  Identities=24%  Similarity=0.284  Sum_probs=128.2

Q ss_pred             cccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCC
Q 009805           72 IQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPN  151 (525)
Q Consensus        72 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  151 (525)
                      +.+|.+|.||||+|+..|+.+++++|++.+.+               ++..+..|.||||+|+..|+.+++++|+++|++
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   69 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN---------------IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL   69 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC---------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC---------------cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence            44555666666666666666666666666554               344555566666666666666666666666655


Q ss_pred             CCCCCCCCCchHHHHHHHcCCHHHHHHHHHhc-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcH
Q 009805          152 FPYSANVNGETPLYMAAARGSKKMVAEILEKC-SSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTP  230 (525)
Q Consensus       152 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp  230 (525)
                      ++ ..+..|.||||+|+..|+.+++++|++++ .+++..+..|.||||+|+..++.+++++|++.+++ ++.++..|.||
T Consensus        70 ~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~  147 (237)
T 3b7b_A           70 VD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENIC  147 (237)
T ss_dssp             CC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             CC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCH
Confidence            44 44555666666666666666666666665 55555555666666666666666666666665555 34555555555


Q ss_pred             HHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHH
Q 009805          231 LHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHES  310 (525)
Q Consensus       231 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  310 (525)
                      ||+|+..|+.+++++|+++|.+. +..+. .|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.+++.+
T Consensus       148 L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~~~~~  224 (237)
T 3b7b_A          148 LHWAAFSGCVDIAEILLAAKCDL-HAVNI-HGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVW  224 (237)
T ss_dssp             HHHHHHHCCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHSCTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHhCCHhHHHHHHHcCCC-CCccCCCCCCHHHHHHHHHHHH
Confidence            55555555555555555555544 22222 455555555555555555555555555 4445555555555555555544


Q ss_pred             HHHHHh
Q 009805          311 KLKRLL  316 (525)
Q Consensus       311 ~~~~ll  316 (525)
                      .+..++
T Consensus       225 ~~~~l~  230 (237)
T 3b7b_A          225 SALQMS  230 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=6.7e-39  Score=305.23  Aligned_cols=263  Identities=18%  Similarity=0.139  Sum_probs=141.7

Q ss_pred             ccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCC
Q 009805           71 LIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGP  150 (525)
Q Consensus        71 l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  150 (525)
                      ++.+|.+|.||||+|++.|+.++|++|++.+++..            .++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga   69 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE------------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGA   69 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc------------cccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            45688999999999999999999999999887622            256788999999999999999999999999999


Q ss_pred             CCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcH
Q 009805          151 NFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTP  230 (525)
Q Consensus       151 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp  230 (525)
                      +++ ..+..|.||||+|+..|+.+++++|++++++.........                  +...   .......+.++
T Consensus        70 ~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~------------------~~~~---~~~~~~~~~~~  127 (282)
T 1oy3_D           70 GVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY------------------LTQS---QDCTPDTSHAP  127 (282)
T ss_dssp             CSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------
T ss_pred             CCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHH------------------hhcc---cccCcchhcch
Confidence            976 6788999999999999999999999998876433211100                  0000   00111223333


Q ss_pred             HHHHHHcCChh-HHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccC-CCCchhHHHHhcCC
Q 009805          231 LHHSAYLGLKD-ITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDN-GGWNVLHFLMVSLH  308 (525)
Q Consensus       231 L~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~  308 (525)
                      ++.++..+... ....+...+.+. ...+. .|.||||+|+..|+.+++++|++++++ ++..+. .|+||||+|+..++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~  204 (282)
T 1oy3_D          128 AAVDSQPNPENEEEPRDEDWRLQL-EAENY-DGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQA  204 (282)
T ss_dssp             ----------------CCCGGGGT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTC
T ss_pred             hhhccccccchhhhhhhhhhhhcC-CCcCC-CCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCC
Confidence            43333332221 122222222221 12222 344555555555555555555555544 233332 25555555555555


Q ss_pred             HHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHhccCCChHHHHhh
Q 009805          309 ESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVNKKKISVKHIELY  375 (525)
Q Consensus       309 ~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n~~g~t~l~~a~~  375 (525)
                      .+++++|++.   +++++.+|..|+||||+|+..+...+ ..|++  .|+|++.+|..|.||+++|..
T Consensus       205 ~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~--~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          205 ASVLELLLKA---GADPTARMYGGRTPLGSALLRPNPILARLLRA--HGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             HHHHHHHHHT---TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHH--TTCCCCCCC------------
T ss_pred             HHHHHHHHHc---CCCCcccccCCCCHHHHHHHcCCcHHHHHHHH--cCCCcCcCCCcccccccccCC
Confidence            5555555543   23345555555555555555543333 44444  455555555555555555543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5.7e-39  Score=298.32  Aligned_cols=231  Identities=23%  Similarity=0.262  Sum_probs=146.6

Q ss_pred             cccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCC
Q 009805           72 IQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPN  151 (525)
Q Consensus        72 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  151 (525)
                      +.+|.+|.||||+|++.|+.+++++|++......           ..++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-----------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   71 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGG-----------RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS   71 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTT-----------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcC-----------CCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3456666666666666666666666665321100           00445566666666666666666666666666666


Q ss_pred             CCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcC----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCC-CC
Q 009805          152 FPYSANVNGETPLYMAAARGSKKMVAEILEKCS----SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERD-DC  226 (525)
Q Consensus       152 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d-~~  226 (525)
                      ++ ..+..|.||||+|+..|+.+++++|+++++    +++..+..|.||||+|+..++.+++++|++.+++. +..+ ..
T Consensus        72 ~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~  149 (241)
T 1k1a_A           72 PM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKS  149 (241)
T ss_dssp             TT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTT
T ss_pred             cc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccC
Confidence            54 455666666666666666666666666665    55666666777777777777777777777766663 3444 56


Q ss_pred             CCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhc
Q 009805          227 GWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVS  306 (525)
Q Consensus       227 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  306 (525)
                      |.||||+|+..|+.+++++|+++|.+. +..+. .|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..
T Consensus       150 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~  226 (241)
T 1k1a_A          150 GRSPLIHAVENNSLSMVQLLLQHGANV-NAQMY-SGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSR  226 (241)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHhc
Confidence            777777777777777777777766665 33333 567777777777777777777777776 566777777777777777


Q ss_pred             CCHHHHHHHhhC
Q 009805          307 LHESKLKRLLKD  318 (525)
Q Consensus       307 ~~~~~~~~ll~~  318 (525)
                      ++.++++.|.+.
T Consensus       227 ~~~~i~~~l~~~  238 (241)
T 1k1a_A          227 RVIDILRGKATR  238 (241)
T ss_dssp             HHHHHHTC----
T ss_pred             CcHHHHhhhccC
Confidence            777777666653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.2e-38  Score=296.04  Aligned_cols=227  Identities=22%  Similarity=0.204  Sum_probs=201.9

Q ss_pred             hcCccCCCChHhHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCC
Q 009805          119 LGLTNEEENTALHEAVQCGNLDAVKILME----AGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGK  194 (525)
Q Consensus       119 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~  194 (525)
                      ++.+|.+|.||||+|+..|+.+++++|++    .+.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   80 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ   80 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence            45689999999999999999999999997    677765 6788999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCc---CcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHh
Q 009805          195 TALHAAVNSYAADVVEKLLAKKRH---LTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAAS  271 (525)
Q Consensus       195 t~L~~A~~~~~~~~~~~Ll~~~~~---~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~  271 (525)
                      ||||+|+..++.+++++|++.++.   ..+..+..|.||||+|+..|+.+++++|++++.+... .+...|.||||+|+.
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA-VDIKSGRSPLIHAVE  159 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTTCCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-ccccCCCcHHHHHHH
Confidence            999999999999999999999872   3677889999999999999999999999999988743 342379999999999


Q ss_pred             cCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHH
Q 009805          272 QGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEI  350 (525)
Q Consensus       272 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~l  350 (525)
                      .|+.+++++|++++++ ++.+|..|+||||+|+..++.++++.|++.   +++++.+|..|+||||+|+..+...+ +.|
T Consensus       160 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l  235 (241)
T 1k1a_A          160 NNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRS---GADSSLKNCHNDTPLMVARSRRVIDILRGK  235 (241)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred             cCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhc---CCCCCCcCCCCCCHHHHHHhcCcHHHHhhh
Confidence            9999999999999998 788999999999999999999999999985   45689999999999999999987766 444


Q ss_pred             H
Q 009805          351 V  351 (525)
Q Consensus       351 l  351 (525)
                      +
T Consensus       236 ~  236 (241)
T 1k1a_A          236 A  236 (241)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=9.6e-38  Score=289.34  Aligned_cols=222  Identities=25%  Similarity=0.307  Sum_probs=205.4

Q ss_pred             hcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHH
Q 009805          119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALH  198 (525)
Q Consensus       119 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~  198 (525)
                      ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence            56789999999999999999999999999999986 67889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHH
Q 009805          199 AAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLA  278 (525)
Q Consensus       199 ~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  278 (525)
                      +|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|+++|.+. ...+. .|.||||+|+..|+.+++
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~  160 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDN-EENICLHWAAFSGCVDIA  160 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHCCHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCC-CCCCHHHHHHHCCCHHHH
Confidence            9999999999999999996667889999999999999999999999999999887 44444 799999999999999999


Q ss_pred             HHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH
Q 009805          279 GTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC  347 (525)
Q Consensus       279 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~  347 (525)
                      ++|++.+++ ++.+|..|+||||+|+..++.++++.|++.   +++++.+|.+|+||||+|+..+....
T Consensus       161 ~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l~~A~~~~~~~~  225 (237)
T 3b7b_A          161 EILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSR---DSDVTLKNKEGETPLQCASLNSQVWS  225 (237)
T ss_dssp             HHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHHSCTTCHHHH
T ss_pred             HHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc---CCCCCccCCCCCCHHHHHHHHHHHHH
Confidence            999999998 788899999999999999999999999985   45689999999999999999986644

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.5e-39  Score=300.82  Aligned_cols=224  Identities=19%  Similarity=0.238  Sum_probs=173.0

Q ss_pred             ccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCH-HHHHHHHhcCCC
Q 009805           73 QTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNL-DAVKILMEAGPN  151 (525)
Q Consensus        73 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~  151 (525)
                      .+|.++.+||+.||+.|+.++|++|++.+.+.....       ...++..+..|.||||.|+..++. .++++|++.|++
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~-------~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad   78 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDA-------EDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG   78 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------------CCCC
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccc-------cccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC
Confidence            467778899999999999999999999887632211       123566788999999999988775 588999999999


Q ss_pred             CCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHH
Q 009805          152 FPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPL  231 (525)
Q Consensus       152 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL  231 (525)
                      ++ ..|.+|+||||+|+..|+.+++++|++.+++++..+..|.||+|.|+..++.+++++|++.+++ ++.+|..|+|||
T Consensus        79 vn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL  156 (269)
T 4b93_B           79 VN-VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPL  156 (269)
T ss_dssp             TT-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHH
T ss_pred             CC-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHH
Confidence            87 7788999999999999999999999999999999999999999999999999999999999998 688999999999


Q ss_pred             HHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCC
Q 009805          232 HHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLH  308 (525)
Q Consensus       232 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  308 (525)
                      |+|+..|+.+++++|+++|+++ +..+. .|.||||+|+..|+.++|++|+++|++ ++.+|.+|+||||+|+++++
T Consensus       157 ~~A~~~g~~~~v~~Ll~~gadv-n~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          157 IYACSGGHHELVALLLQHGASI-NASNN-KGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHHHTTCGGGHHHHHHTTCCT-TCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHCCCHHHHHHHHHCCCCC-Ccccc-CCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCc
Confidence            9999999999999999999987 44555 799999999999999999999999998 78899999999999998775

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.4e-37  Score=287.04  Aligned_cols=222  Identities=22%  Similarity=0.223  Sum_probs=127.6

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 009805           77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSA  156 (525)
Q Consensus        77 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  156 (525)
                      .+.||||.|++.|+.+.++.|++.+..              .++.+|..|.||||+|+..|+.+++++|+++|++++ ..
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~--------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~   69 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKS--------------LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DK   69 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGG--------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CC
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchh--------------hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-Cc
Confidence            345556666666666666555555432              133445555666666666666666666665555544 44


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHH
Q 009805          157 NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY  236 (525)
Q Consensus       157 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~  236 (525)
                      +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.+.+ ++.++..|.||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~  148 (231)
T 3aji_A           70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAA  148 (231)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHH
Confidence            55555666666666666666666666655555555566666666666666666666655555 34555556666666666


Q ss_pred             cCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHh
Q 009805          237 LGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLL  316 (525)
Q Consensus       237 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll  316 (525)
                      .|+.+++++|++++.+. +..+. .|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.+++++|.
T Consensus       149 ~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~  225 (231)
T 3aji_A          149 KGNLKMVHILLFYKAST-NIQDT-EGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLAE  225 (231)
T ss_dssp             HTCHHHHHHHHHTTCCS-CCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCCc-cccCC-CCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHHc
Confidence            66666666666655554 22233 455666666666666666666666655 4555666666666666666655555555


Q ss_pred             h
Q 009805          317 K  317 (525)
Q Consensus       317 ~  317 (525)
                      +
T Consensus       226 ~  226 (231)
T 3aji_A          226 G  226 (231)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.9e-37  Score=283.38  Aligned_cols=223  Identities=22%  Similarity=0.227  Sum_probs=205.1

Q ss_pred             cCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHH
Q 009805          123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVN  202 (525)
Q Consensus       123 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  202 (525)
                      +..+++|||.|+..|+.+.++.|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   82 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS   82 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence            45688999999999999999999999887666788999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHH
Q 009805          203 SYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTII  282 (525)
Q Consensus       203 ~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  282 (525)
                      .++.+++++|++.+.+ .+.+|..|.||||+|+..|+.+++++|++++.+. ...+. .|.||||+|+..|+.+++++|+
T Consensus        83 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll  159 (231)
T 3aji_A           83 AGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDH-YDATAMHRAAAKGNLKMVHILL  159 (231)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCcHHHHHHHcCCHHHHHHHH
Confidence            9999999999999988 6788999999999999999999999999999887 44444 7999999999999999999999


Q ss_pred             hhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHH
Q 009805          283 AHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVR  352 (525)
Q Consensus       283 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~  352 (525)
                      +++++ ++.+|..|+||||+|+..++.+++++|++.   +++++.+|..|.||||+|+..+...+ ..|.+
T Consensus       160 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~  226 (231)
T 3aji_A          160 FYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQ---GASIYIENKEEKTPLQVAKGGLGLILKRLAEG  226 (231)
T ss_dssp             HTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred             hcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence            99988 788999999999999999999999999995   45689999999999999999887776 55544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.7e-37  Score=295.47  Aligned_cols=265  Identities=17%  Similarity=0.124  Sum_probs=164.2

Q ss_pred             cccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhH
Q 009805           29 VTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAM  108 (525)
Q Consensus        29 ~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~  108 (525)
                      ..+.+|.||||+|+..       |+.+++++|++. ...+..++.+|..|.||||+|+..|+.+++++|++.+++     
T Consensus         4 ~~d~~g~t~L~~A~~~-------g~~~~v~~Ll~~-g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----   70 (282)
T 1oy3_D            4 YVTEDGDTALHLAVIH-------QHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-----   70 (282)
T ss_dssp             CCCTTCCCHHHHHHHT-------TCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----
T ss_pred             ccCCCCCcHHHHHHHc-------CCHHHHHHHHhc-CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----
Confidence            4677999999999999       999999999873 444445788999999999999999999999999999987     


Q ss_pred             hhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCC
Q 009805          109 KCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAH  188 (525)
Q Consensus       109 ~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  188 (525)
                                ++.+|..|.||||+|+..|+.+++++|++++++.......   +.                +..+  ...
T Consensus        71 ----------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~---~~----------------~~~~--~~~  119 (282)
T 1oy3_D           71 ----------VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD---TY----------------LTQS--QDC  119 (282)
T ss_dssp             ----------SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------------------------
T ss_pred             ----------CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHH---HH----------------hhcc--ccc
Confidence                      6678999999999999999999999999998875421110   00                0000  011


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHH-HHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHH
Q 009805          189 DGPNGKTALHAAVNSYAADVVE-KLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALL  267 (525)
Q Consensus       189 ~~~~g~t~L~~A~~~~~~~~~~-~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~  267 (525)
                      ....+.++++.+...+...... .+...+.+ .+.++..|.||||+|+..|+.+++++|+++|++... .+...|.||||
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~g~tpL~  197 (282)
T 1oy3_D          120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK-PEPTCGRTPLH  197 (282)
T ss_dssp             ------------------------CCCGGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTTCCCHHH
T ss_pred             Ccchhcchhhhccccccchhhhhhhhhhhhc-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCcCHHH
Confidence            1223444555444443332222 22222322 455666666777777776667777777766666532 22224677777


Q ss_pred             HHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcC
Q 009805          268 MAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLS  343 (525)
Q Consensus       268 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~  343 (525)
                      +|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.++++.|++.   +++++.+|..|.|||++|....
T Consensus       198 ~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          198 LAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAH---GAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHT---TCCCCCCC--------------
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHcCCcHHHHHHHHc---CCCcCcCCCcccccccccCCcc
Confidence            77777777777777777666 566677777777777777777777777763   3446777777777777776653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=282.05  Aligned_cols=231  Identities=23%  Similarity=0.226  Sum_probs=212.5

Q ss_pred             cccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCC
Q 009805           72 IQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPN  151 (525)
Q Consensus        72 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  151 (525)
                      ...|..|.||||.|++.|+.+++++|++.+.+               ++.++..|.||||+|+..|+.+++++|+++|++
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~   67 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD---------------VRQPDKENVTLLHWAAINNRIDLVKYYISKGAI   67 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCC---------------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCc
Confidence            45688899999999999999999999999977               567889999999999999999999999999999


Q ss_pred             CCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHH
Q 009805          152 FPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPL  231 (525)
Q Consensus       152 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL  231 (525)
                      .....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.+ ++.++..|.|||
T Consensus        68 ~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l  146 (240)
T 3eu9_A           68 VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPL  146 (240)
T ss_dssp             TTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             chhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHH
Confidence            8877777899999999999999999999999999999999999999999999999999999999988 688899999999


Q ss_pred             HHHHHcCC-hhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHH
Q 009805          232 HHSAYLGL-KDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHES  310 (525)
Q Consensus       232 ~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  310 (525)
                      |+|+..++ .+++++|++.+.+.... +...|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.+
T Consensus       147 ~~a~~~~~~~~~~~~L~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~  224 (240)
T 3eu9_A          147 MWAAYRTHSVDPTRLLLTFNVSVNLG-DKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVW  224 (240)
T ss_dssp             HHHHHHCCSSTTHHHHHHTTCCTTCC-CTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHHHHHHHTTCHH
T ss_pred             HHHHHhCChHHHHHHHHhcCCCcchh-hccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHH
Confidence            99997776 89999999999887443 333689999999999999999999999988 7889999999999999999999


Q ss_pred             HHHHHhhCcc
Q 009805          311 KLKRLLKDPL  320 (525)
Q Consensus       311 ~~~~ll~~~~  320 (525)
                      ++++|++...
T Consensus       225 ~v~~L~~~~~  234 (240)
T 3eu9_A          225 MINHLQEARQ  234 (240)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHhhh
Confidence            9999998543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.1e-36  Score=280.48  Aligned_cols=220  Identities=25%  Similarity=0.274  Sum_probs=180.0

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcC--CCCCCC
Q 009805           78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAG--PNFPYS  155 (525)
Q Consensus        78 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~  155 (525)
                      |+||||.|++.|+.+++++|++.+.+.              .+.+|..|.||||+|+..|+.+++++|+++|  +++...
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~--------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~   67 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSL--------------LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY   67 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGG--------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGC
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccc--------------cccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc
Confidence            689999999999999999999987652              3457888999999999999999999999998  555433


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHhc--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHH
Q 009805          156 ANVNGETPLYMAAARGSKKMVAEILEKC--SSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHH  233 (525)
Q Consensus       156 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~  233 (525)
                      .+..|.||||+|+..|+.+++++|+++|  ++++..+..|.||||+|+..++.+++++|++.+.+ ++.+|..|.||||+
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~  146 (228)
T 2dzn_A           68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHR  146 (228)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHH
Confidence            6788999999999999999999999988  78888888899999999999999999999998887 57788888888888


Q ss_pred             HHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHH-hhCCCccccccCCCCchhHHHHhcCCHHHH
Q 009805          234 SAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTII-AHYPECYDLVDNGGWNVLHFLMVSLHESKL  312 (525)
Q Consensus       234 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll-~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~  312 (525)
                      |+..|+.+++++|++++....+..+. .|.||||+|+..|+.+++++|+ +.+++ ++.+|.+|+||||+|+..+   +.
T Consensus       147 A~~~~~~~~v~~Ll~~g~~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~~~g~t~l~~A~~~~---~~  221 (228)
T 2dzn_A          147 AASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALNEQ---VK  221 (228)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCBCTTSCBGGGGCSSTT---HH
T ss_pred             HHHcCCHHHHHHHHhcCcccccCcCC-CCCCHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCcHHHHHHHHH---HH
Confidence            88888888888888888333244454 6888888888888888888888 77777 6778888888888886653   34


Q ss_pred             HHHhh
Q 009805          313 KRLLK  317 (525)
Q Consensus       313 ~~ll~  317 (525)
                      ++|++
T Consensus       222 ~~l~~  226 (228)
T 2dzn_A          222 KFFLN  226 (228)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            44443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-37  Score=298.43  Aligned_cols=249  Identities=20%  Similarity=0.216  Sum_probs=203.4

Q ss_pred             CCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCC
Q 009805           75 NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPY  154 (525)
Q Consensus        75 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  154 (525)
                      +..|.||||.||..|+.++|++|++.+.+               ++..|..|.||||+|+..|+.+++++|+++|++++ 
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-  100 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGAD---------------INYANVDGLTALHQACIDDNVDMVKFLVENGANIN-  100 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCC---------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCC---------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-
Confidence            45678999999999999999999999887               66788999999999999999999999999999976 


Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHH
Q 009805          155 SANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS  234 (525)
Q Consensus       155 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A  234 (525)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++++.++.......+..+..+.++++  
T Consensus       101 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--  178 (299)
T 1s70_B          101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--  178 (299)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--
Confidence            678899999999999999999999999999999999999999999999999999998887654433332222223322  


Q ss_pred             HHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHH
Q 009805          235 AYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKR  314 (525)
Q Consensus       235 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~  314 (525)
                            ..++.++..+.......+. .|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.++++.
T Consensus       179 ------~~~~~~l~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~  250 (299)
T 1s70_B          179 ------RDARQWLNSGHINDVRHAK-SGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRI  250 (299)
T ss_dssp             ------HHHHHHHHHTCCCCCCCTT-TCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             ------HHHHHHHhccCcchhhhcC-CCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHH
Confidence                  3344555555554343333 688999999999999999999998888 77888999999999999999999999


Q ss_pred             HhhCccccccccccCCCCChHHHHHHhcCchhHHHHHH
Q 009805          315 LLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVR  352 (525)
Q Consensus       315 ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~~~ll~  352 (525)
                      |++.   +++++.+|..|+||||+|+......+..+++
T Consensus       251 Ll~~---gad~~~~d~~g~t~l~~A~~~~~~~l~~l~~  285 (299)
T 1s70_B          251 LVEN---LCDMEAVNKVGQTAFDVADEDILGYLEELQK  285 (299)
T ss_dssp             HHHT---TCCTTCCCTTSCCTTTSCCSGGGHHHHHHHH
T ss_pred             HHHc---CCCCCCcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9985   3568888999999999997755555555555

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.8e-36  Score=278.91  Aligned_cols=211  Identities=21%  Similarity=0.239  Sum_probs=187.5

Q ss_pred             CChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhc--CCCCC-CCCCCCcHHHHHHH
Q 009805          126 ENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKC--SSAAH-DGPNGKTALHAAVN  202 (525)
Q Consensus       126 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~--~~~~~-~~~~g~t~L~~A~~  202 (525)
                      |+||||+|+..|+.++++.|++.+++.....+..|.||||+|+..|+.+++++|+++|  .+++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            7899999999999999999999999877678899999999999999999999999999  55555 78899999999999


Q ss_pred             cCCHHHHHHHHHhc--CcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHH
Q 009805          203 SYAADVVEKLLAKK--RHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGT  280 (525)
Q Consensus       203 ~~~~~~~~~Ll~~~--~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  280 (525)
                      .|+.+++++|++.+  ++ .+..+..|.||||+|+..|+.+++++|+++|.+. ...+. .|.||||+|+..|+.+++++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~  158 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDK-FNQIPLHRAASVGSLKLIEL  158 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCT-TSCCHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCC-CCCCHHHHHHHcCCHHHHHH
Confidence            99999999999988  55 5778889999999999999999999999998887 44444 68999999999999999999


Q ss_pred             HHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHh-hCccccccccccCCCCChHHHHHHhc
Q 009805          281 IIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLL-KDPLYKSFIDEKNEMGNTPLHILATL  342 (525)
Q Consensus       281 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll-~~~~~~~~in~~d~~G~T~Lh~A~~~  342 (525)
                      |++.++..++.+|..|+||||+|+..++.++++.|+ +   .+++++.+|..|.||||+|+..
T Consensus       159 Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK---YGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH---HCCCSCCBCTTSCBGGGGCSST
T ss_pred             HHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCcHHHHHHHH
Confidence            999995558889999999999999999999999999 5   3456899999999999999764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-37  Score=290.21  Aligned_cols=217  Identities=22%  Similarity=0.219  Sum_probs=172.2

Q ss_pred             CccCCCChHhHHHHHcCCHHHHHHHHhcCCCCC-------CCCCCCCchHHHHHHHcCCH-HHHHHHHHhcCCCCCCCCC
Q 009805          121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFP-------YSANVNGETPLYMAAARGSK-KMVAEILEKCSSAAHDGPN  192 (525)
Q Consensus       121 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-------~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~  192 (525)
                      .+|..+.++|+.|+..|+.++|++|++.+++..       ...+..+.|||+.|+..++. .++++|++.|++++.+|.+
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            367788899999999999999999999887532       24566789999999988775 4889999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhc
Q 009805          193 GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQ  272 (525)
Q Consensus       193 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~  272 (525)
                      |.||||+|+..|+.+++++|++.+++ ++.++..|.||+|+|+..++.+++++|+++|+++ +..+. .|.||||+|+..
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~-~g~TpL~~A~~~  162 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDL-SGNTPLIYACSG  162 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-TCCCHHHHHHHT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHC
Confidence            99999999999999999999999998 6888999999999999999999999999999887 44555 799999999999


Q ss_pred             CCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCc
Q 009805          273 GHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSA  344 (525)
Q Consensus       273 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~  344 (525)
                      |+.+++++|++++++ ++.+|..|+||||+|+..|+.++++.|++.   ++++|.+|.+|+||||+|++++.
T Consensus       163 g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~---Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          163 GHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLH---GASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             TCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             CCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHhCCc
Confidence            999999999999998 788999999999999999999999999985   46799999999999999998764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=7.6e-37  Score=293.72  Aligned_cols=282  Identities=21%  Similarity=0.172  Sum_probs=228.2

Q ss_pred             HHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchH
Q 009805           84 AAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETP  163 (525)
Q Consensus        84 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp  163 (525)
                      .+++.++.+.++.++............      ......+..|.||||.|+..|+.+++++|+++|++++ ..+..|.||
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~   76 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVK------RKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTA   76 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCC------CSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCBH
T ss_pred             hHHHHHHHHHHHHHHcccccccccccc------CcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCH
Confidence            567778888888888776543211100      0012235578899999999999999999999999987 678899999


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHH
Q 009805          164 LYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDIT  243 (525)
Q Consensus       164 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v  243 (525)
                      ||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..++.+++
T Consensus        77 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~  155 (299)
T 1s70_B           77 LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELL  155 (299)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHH
Confidence            9999999999999999999999999999999999999999999999999999988 678899999999999999999999


Q ss_pred             HHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccc
Q 009805          244 ALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKS  323 (525)
Q Consensus       244 ~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~  323 (525)
                      +.++............ .+.++++        ..+..++..+.......+..|+||||+|+..|+.++++.|++.   ++
T Consensus       156 ~~ll~~~~~~~~~~~~-~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~  223 (299)
T 1s70_B          156 QNEVNRQGVDIEAARK-EEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---RY  223 (299)
T ss_dssp             HHHHHHHTCCHHHHHH-HHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT---TC
T ss_pred             HHHHhhcCCCchhhhh-hhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc---CC
Confidence            9988754332222222 2223333        3455667777665666788999999999999999999999985   45


Q ss_pred             cccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHhccCCChHHHHhhcCCCccchhhhHHHHhhc
Q 009805          324 FIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVNKKKISVKHIELYGCPELQGEIQGLSENIGR  393 (525)
Q Consensus       324 ~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~~~~~~~~~l~~  393 (525)
                      ++|.+|..|+||||+|+..+...+ ..|++  .|+|++.+|..|+||+++|.+.      ..+.+.+++++
T Consensus       224 d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~--~gad~~~~d~~g~t~l~~A~~~------~~~~l~~l~~~  286 (299)
T 1s70_B          224 DVNIKDYDGWTPLHAAAHWGKEEACRILVE--NLCDMEAVNKVGQTAFDVADED------ILGYLEELQKK  286 (299)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCTTTSCCSG------GGHHHHHHHHH
T ss_pred             CCCCcCCCCCcHHHHHHhcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHH------HHHHHHHHHHH
Confidence            699999999999999999987666 77887  8999999999999999999742      34444444444

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=9.6e-36  Score=273.15  Aligned_cols=215  Identities=17%  Similarity=0.140  Sum_probs=180.0

Q ss_pred             CCcchhhhhhhhccccccc-cCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCC
Q 009805           12 GEIEPFNGIAKDNLRSIVT-HNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGR   90 (525)
Q Consensus        12 g~~~~v~~ll~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~   90 (525)
                      |+.+++++|+++|.+.+.. +.+|.||||+|+..       |+.+++++|++.    +..++..|..|.||||+|+..|+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~-------g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~   70 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARY-------SRSDAAKRLLEA----SADANIQDNMGRTPLHAAVSADA   70 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHT-------TCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHc-------CCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCC
Confidence            7888999999988877654 66889999999999       999999998763    56677788889999999999999


Q ss_pred             hhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHc
Q 009805           91 PAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAAR  170 (525)
Q Consensus        91 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  170 (525)
                      .+++++|++.+...              ++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..
T Consensus        71 ~~~v~~Ll~~~~~~--------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~  135 (223)
T 2f8y_A           71 QGVFQILIRNRATD--------------LDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAV  135 (223)
T ss_dssp             HHHHHHHHHBTTSC--------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHT
T ss_pred             HHHHHHHHHcCCCC--------------cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHc
Confidence            99999999887631              45678888999999999999999999999888876 6677888999999999


Q ss_pred             CCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 009805          171 GSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFD  250 (525)
Q Consensus       171 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  250 (525)
                      |+.+++++|+++|++++.++..|.||||+|+..++.+++++|++++++ ++.+|..|.||||+|+..++.+++++|+++|
T Consensus       136 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g  214 (223)
T 2f8y_A          136 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYN  214 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcC
Confidence            999999999999988888888899999999998999999999988887 5778888888888888888888888888887


Q ss_pred             CCc
Q 009805          251 GSS  253 (525)
Q Consensus       251 ~~~  253 (525)
                      ...
T Consensus       215 ~~~  217 (223)
T 2f8y_A          215 LVR  217 (223)
T ss_dssp             CSS
T ss_pred             CCc
Confidence            754

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=5.6e-36  Score=285.08  Aligned_cols=218  Identities=18%  Similarity=0.154  Sum_probs=132.8

Q ss_pred             ccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCC
Q 009805           71 LIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGP  150 (525)
Q Consensus        71 l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  150 (525)
                      ++.+|..|.||||+|+..|+.++|++|++.+++               ++..  +|.||||+|+..|+.+++++|+++|+
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga   86 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL---------------KNLL--ENEFPLHQAATLEDTKIVKILLFSGL   86 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG---------------GSCC--TTCCHHHHHTTSSSCHHHHHHHHTTC
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---------------CCCC--CCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            455666666666666666666666666666654               2222  36666666666666666666666666


Q ss_pred             CCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCC-CcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCc
Q 009805          151 NFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG-KTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWT  229 (525)
Q Consensus       151 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g-~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t  229 (525)
                      +++ ..+..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|++.+++....  ..|.|
T Consensus        87 ~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~g~t  163 (285)
T 3kea_A           87 DDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AILLS  163 (285)
T ss_dssp             CTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC--STHHH
T ss_pred             CCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc--cCCcc
Confidence            654 455566666666666666666666666666666666666 56666666666666666666666553111  15666


Q ss_pred             HHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcH-HHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCC
Q 009805          230 PLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTA-LLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLH  308 (525)
Q Consensus       230 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tp-L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  308 (525)
                      |||+|+..|+.+++++|+++|++. +..+. .|.|| ||+|+..|+.+++++|+++|++ ++..|       +.|+..++
T Consensus       164 ~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~-~g~t~~L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~  233 (285)
T 3kea_A          164 CIHITIKNGHVDMMILLLDYMTST-NTNNS-LLFIPDIKLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLDD  233 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHT-CTTCC-CBCCTTHHHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTTC
T ss_pred             HHHHHHHcChHHHHHHHHHcCCCC-CcccC-CCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCC
Confidence            666666666666666666666554 33333 45565 6666666666666666666665 33333       24555666


Q ss_pred             HHHHHHHhhC
Q 009805          309 ESKLKRLLKD  318 (525)
Q Consensus       309 ~~~~~~ll~~  318 (525)
                      .+++++|++.
T Consensus       234 ~~iv~~Ll~~  243 (285)
T 3kea_A          234 AEIAKMIIEK  243 (285)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            6666666664

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1e-35  Score=283.19  Aligned_cols=234  Identities=18%  Similarity=0.083  Sum_probs=204.0

Q ss_pred             hcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHH
Q 009805          119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALH  198 (525)
Q Consensus       119 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~  198 (525)
                      ++.+|..|.||||+|+..|+.+++++|+++|++++..   +|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~  100 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY  100 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence            4578999999999999999999999999999987643   4999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhcCcCcccCCCCC-CcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHH
Q 009805          199 AAVNSYAADVVEKLLAKKRHLTRERDDCG-WTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESL  277 (525)
Q Consensus       199 ~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g-~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  277 (525)
                      +|+..|+.+++++|++.+++ ++.++..| .||||+|+..|+.+++++|++++++...   ...|.||||+|+..|+.++
T Consensus       101 ~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~g~~~~  176 (285)
T 3kea_A          101 YAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD---LAILLSCIHITIKNGHVDM  176 (285)
T ss_dssp             HHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC---CSTHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc---ccCCccHHHHHHHcChHHH
Confidence            99999999999999999998 67888888 7999999999999999999999987622   2268999999999999999


Q ss_pred             HHHHHhhCCCccccccCCCCch-hHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHHhC
Q 009805          278 AGTIIAHYPECYDLVDNGGWNV-LHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIG  355 (525)
Q Consensus       278 v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~  355 (525)
                      +++|++++++ ++.+|..|+|| ||+|+..++.+++++|++.   +++++.+|.       .|+..+...+ ..|++  .
T Consensus       177 v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~---gad~~~~~~-------~a~~~~~~~iv~~Ll~--~  243 (285)
T 3kea_A          177 MILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKY---DINIYSANL-------ENVLLDDAEIAKMIIE--K  243 (285)
T ss_dssp             HHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS---CBCSTTTTG-------GGGTTTCHHHHHHHHH--H
T ss_pred             HHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHc---CCCCCCCCh-------hhhhcCCHHHHHHHHH--c
Confidence            9999999988 78899999998 9999999999999999985   455788773       5566665555 78887  5


Q ss_pred             CCChHHHhccCCChHHHHh
Q 009805          356 KGDTQAVNKKKISVKHIEL  374 (525)
Q Consensus       356 ~~d~~~~n~~g~t~l~~a~  374 (525)
                      |++++.  ......+++..
T Consensus       244 g~~~~~--~~~~~~~~~~~  260 (285)
T 3kea_A          244 HVEYKS--DSYTKDLDIVK  260 (285)
T ss_dssp             HHHHTT--CTTTTTCHHHH
T ss_pred             CCCCCC--ccccchHHHHh
Confidence            665443  33445566665

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.1e-35  Score=269.72  Aligned_cols=215  Identities=22%  Similarity=0.215  Sum_probs=168.9

Q ss_pred             CchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhH
Q 009805           52 GESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH  131 (525)
Q Consensus        52 g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh  131 (525)
                      |+.+++++|++   .+.......|..|.||||+|+..|+.+++++|++.+.+               ++.+|..|.||||
T Consensus         2 g~~~~i~~Ll~---~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~~~g~t~L~   63 (223)
T 2f8y_A            2 DAPAVISDFIY---QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD---------------ANIQDNMGRTPLH   63 (223)
T ss_dssp             ---CCEETTEE---TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------------TTCCCTTSCCHHH
T ss_pred             CcHHHHHHHHH---cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC---------------CCCcCCCCCCHHH
Confidence            66777777743   34444444578888888888888888888888888776               5567888888888


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 009805          132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEK  211 (525)
Q Consensus       132 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  211 (525)
                      +|+..|+.+++++|+++++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++
T Consensus        64 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  143 (223)
T 2f8y_A           64 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV  143 (223)
T ss_dssp             HHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            88888888888888888874444677788888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCC
Q 009805          212 LLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPE  287 (525)
Q Consensus       212 Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  287 (525)
                      |++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|++. ...+. .|.|||++|+..|+.+++++|++++..
T Consensus       144 Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          144 LLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANR-DITDH-MDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             HHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             HHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccc-cCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            8888877 5777788888888888888888888888887766 33444 677888888888888888888887765

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-36  Score=295.96  Aligned_cols=267  Identities=15%  Similarity=0.048  Sum_probs=174.0

Q ss_pred             CchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhh--HHHhcCccCCCChH
Q 009805           52 GESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTA--WQMLGLTNEEENTA  129 (525)
Q Consensus        52 g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~--~~~l~~~~~~g~t~  129 (525)
                      ...+++++|++    .+..++..+..|.|+++     |+.++|+.|+++|.++....-......  ..--..+.....+.
T Consensus        30 ~~~dlv~~ll~----~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  100 (327)
T 1sw6_A           30 FTHDLTSDFLS----SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQ  100 (327)
T ss_dssp             CCTTCCCSTTT----SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC----------------------------
T ss_pred             hcCchHHHHhh----CCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccch
Confidence            55677888865    47888999999999988     999999999999987422100000000  00000011122334


Q ss_pred             hHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCC---H
Q 009805          130 LHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYA---A  206 (525)
Q Consensus       130 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~---~  206 (525)
                      +|.|+..+..+++++|++.|.+++...+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+   .
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~  180 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDS  180 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHT
T ss_pred             hHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccH
Confidence            5888888888999999999999885478899999999999999999999999999999999999999999999888   6


Q ss_pred             HHHHHHHHhcCcCcccCCCCCCcHHHHHHH----cCChhHHHHHhhcCC--------------------CcchhcccCCC
Q 009805          207 DVVEKLLAKKRHLTRERDDCGWTPLHHSAY----LGLKDITALLLEFDG--------------------SSALILDKDRK  262 (525)
Q Consensus       207 ~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~~~--------------------~~~~~~~~~~g  262 (525)
                      ++++.|++.+....+.+|..|+||||+|+.    .|+.+++++|++.+.                    ++ ...+. .|
T Consensus       181 ~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~-~g  258 (327)
T 1sw6_A          181 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNG-ER  258 (327)
T ss_dssp             TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------
T ss_pred             HHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccc-cC
Confidence            778888887744478888999999999998    888999999987642                    22 22222 45


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHh
Q 009805          263 MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILAT  341 (525)
Q Consensus       263 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~  341 (525)
                      .||||.|+.      +++|++++   ++.+|..|+||||+|+..|+.+++++|++.   +++++.+|..|+||||+|++
T Consensus       259 ~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          259 KDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             -CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCCCTTSCCGGGGTCC
T ss_pred             CChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHh
Confidence            555555543      45555542   344455555555555555555555555542   23355555555555555544

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=5.5e-35  Score=271.04  Aligned_cols=229  Identities=21%  Similarity=0.147  Sum_probs=202.0

Q ss_pred             ccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHh
Q 009805           30 THNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMK  109 (525)
Q Consensus        30 ~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~  109 (525)
                      .|..|.++||.|++.       |+.+++++|++    .+.+++.++..|.||||+|+..|+.+++++|++.+.+..    
T Consensus         5 ~d~~~~~~l~~A~~~-------g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~----   69 (240)
T 3eu9_A            5 IDDYSTWDIVKATQY-------GIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD----   69 (240)
T ss_dssp             CSCGGGCCHHHHHHT-------TCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----
T ss_pred             cccccchHHHHHHHc-------CChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch----
Confidence            455789999999999       99999999976    356778889999999999999999999999999987632    


Q ss_pred             hhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCC
Q 009805          110 CCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD  189 (525)
Q Consensus       110 ~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~  189 (525)
                                ...+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++..
T Consensus        70 ----------~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~  138 (240)
T 3eu9_A           70 ----------QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM  138 (240)
T ss_dssp             ----------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ----------hhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcccc
Confidence                      2345569999999999999999999999999876 67889999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCC-HHHHHHHHHhcCcCcccCCC-CCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHH
Q 009805          190 GPNGKTALHAAVNSYA-ADVVEKLLAKKRHLTRERDD-CGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALL  267 (525)
Q Consensus       190 ~~~g~t~L~~A~~~~~-~~~~~~Ll~~~~~~~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~  267 (525)
                      +..|.||||+|+..++ .+++++|++.+.+. +..+. .|.||||+|+..|+.+++++|+++|.+. ...+. .|.|||+
T Consensus       139 ~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~l~  215 (240)
T 3eu9_A          139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-DAQNI-KGESALD  215 (240)
T ss_dssp             CTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCBCT-TSCBHHH
T ss_pred             CCCCCcHHHHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHH
Confidence            9999999999996665 89999999999884 55554 8999999999999999999999999887 44555 7999999


Q ss_pred             HHHhcCCHHHHHHHHhhCCC
Q 009805          268 MAASQGHESLAGTIIAHYPE  287 (525)
Q Consensus       268 ~A~~~g~~~~v~~Ll~~~~~  287 (525)
                      +|+..|+.+++++|++.+++
T Consensus       216 ~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          216 LAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             HHHHTTCHHHHHHHHHHC--
T ss_pred             HHHHcCcHHHHHHHHHhhhc
Confidence            99999999999999999876

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-35  Score=288.40  Aligned_cols=258  Identities=14%  Similarity=0.080  Sum_probs=203.4

Q ss_pred             HcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCc--cccc-----------cCC
Q 009805           10 TNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPS--LLIQ-----------TNA   76 (525)
Q Consensus        10 ~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~--~l~~-----------~~~   76 (525)
                      .....+++++|+++|++.+..+..|.++++            |+.++++.|++..-....  ....           ...
T Consensus        28 ~~~~~dlv~~ll~~ga~i~~~~~~g~~~~~------------g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~   95 (327)
T 1sw6_A           28 ITFTHDLTSDFLSSPLKIMKALPSPVVNDN------------EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGS   95 (327)
T ss_dssp             EECCTTCCCSTTTSSCCCEECBCCCCCCCH------------HHHHHHHHHHHHHHC-----------------------
T ss_pred             hhhcCchHHHHhhCCcccccCCCCCCcccC------------chhHHHHHHHHhccCCccccchHhhhcccccccccccC
Confidence            345667899999999999989989999987            899999999875211111  0000           111


Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcC-ccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCC
Q 009805           77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGL-TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYS  155 (525)
Q Consensus        77 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  155 (525)
                      ...+.+|.|+..+..++++.|++.+.+               ++. +|..|.||||+|+..|+.++|++|+++|++++ .
T Consensus        96 ~~~~~~~~a~~~~~~~~~~~l~~~g~d---------------vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~  159 (327)
T 1sw6_A           96 SNQQQQHVSFDSLLQEVNDAFPNTQLN---------------LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-Y  159 (327)
T ss_dssp             --------CHHHHHHHHHHHCTTSCCC---------------SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-B
T ss_pred             CccchhHHHHHhhHHHHHHHHHhcCCC---------------cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-C
Confidence            122345888888888999999998887               667 79999999999999999999999999999987 7


Q ss_pred             CCCCCchHHHHHHHcCC---HHHHHHHHHhc-CCCCCCCCCCCcHHHHHHH----cCCHHHHHHHHHh------------
Q 009805          156 ANVNGETPLYMAAARGS---KKMVAEILEKC-SSAAHDGPNGKTALHAAVN----SYAADVVEKLLAK------------  215 (525)
Q Consensus       156 ~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~------------  215 (525)
                      .+..|+||||+|+..|+   .++++.|++.+ ++++.+|..|.||||+|+.    .|+.+++++|++.            
T Consensus       160 ~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~  239 (327)
T 1sw6_A          160 GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP  239 (327)
T ss_dssp             CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             cCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchH
Confidence            88899999999999998   78888999887 7789999999999999999    8999999999987            


Q ss_pred             --------cCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCC
Q 009805          216 --------KRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPE  287 (525)
Q Consensus       216 --------~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  287 (525)
                              +.+ ++.++..|.||||+|+.      +++|++++.   +..+. .|+||||+|+..|+.+++++|++++++
T Consensus       240 i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~~~---n~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~Gad  308 (327)
T 1sw6_A          240 IQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIANML---NAQDS-NGDTCLNIAARLGNISIVDALLDYGAD  308 (327)
T ss_dssp             EEEC-----------------CHHHHHCS------HHHHHHHTT---TCCCT-TSCCHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred             HHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHhCC---CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                    445 67889999999999985      899999853   44454 799999999999999999999999999


Q ss_pred             ccccccCCCCchhHHHHhcC
Q 009805          288 CYDLVDNGGWNVLHFLMVSL  307 (525)
Q Consensus       288 ~~~~~d~~g~t~Lh~A~~~~  307 (525)
                       ++.+|..|+||||+|++.|
T Consensus       309 -~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          309 -PFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             -TTCCCTTSCCGGGGTCC--
T ss_pred             -CcccCCCCCCHHHHHHhcC
Confidence             7899999999999998764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4e-35  Score=271.49  Aligned_cols=199  Identities=25%  Similarity=0.258  Sum_probs=101.8

Q ss_pred             cCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhh
Q 009805           31 HNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKC  110 (525)
Q Consensus        31 ~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  110 (525)
                      |.+|.||||+|+..       |+.+++++|++.....+.+++.+|..|.||||+|+..|+.+++++|++.+++       
T Consensus         5 d~~g~t~L~~A~~~-------g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------   70 (236)
T 1ikn_D            5 TEDGDSFLHLAIIH-------EEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-------   70 (236)
T ss_dssp             --CCCCTTHHHHHT-------TCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-------
T ss_pred             CCCCCchhHHHHHc-------CChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------
Confidence            33555555555555       5555555554432222334455555555555555555555555555555544       


Q ss_pred             hhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCC-----CCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCC
Q 009805          111 CAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNF-----PYSANVNGETPLYMAAARGSKKMVAEILEKCSS  185 (525)
Q Consensus       111 ~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  185 (525)
                              ++.+|..|.||||+|+..|+.+++++|++.+++.     ....+..|.||||+|+..|+.+++++|+++|++
T Consensus        71 --------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  142 (236)
T 1ikn_D           71 --------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD  142 (236)
T ss_dssp             --------SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             --------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                    3345555555555555555555555555555431     123344455555555555555555555555555


Q ss_pred             CCCCCC-CCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCC
Q 009805          186 AAHDGP-NGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGS  252 (525)
Q Consensus       186 ~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  252 (525)
                      ++.++. .|.||||+|+..++.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       143 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~  209 (236)
T 1ikn_D          143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  209 (236)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHcchh
Confidence            555544 555555555555555555555555544 344444455555555555555555555544443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.1e-33  Score=261.12  Aligned_cols=194  Identities=26%  Similarity=0.334  Sum_probs=145.3

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHh-hhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCC--
Q 009805           77 KGDSPLHAAAKCGRPAVVKVLIEF-AKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFP--  153 (525)
Q Consensus        77 ~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--  153 (525)
                      .|+||||.|++.|+.+++++|++. +.+               ++.+|..|.||||+|+..|+.+++++|+++|+++.  
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~---------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~   66 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCE---------------VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE   66 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSC---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCC---------------cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc
Confidence            588999999999999999999997 665               66789999999999999999999999999988753  


Q ss_pred             --CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCC-------------CCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 009805          154 --YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP-------------NGKTALHAAVNSYAADVVEKLLAKKRH  218 (525)
Q Consensus       154 --~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~-------------~g~t~L~~A~~~~~~~~~~~Ll~~~~~  218 (525)
                        ...+..|.||||+|+..|+.+++++|+++|++++..+.             .|.||||+|+..|+.+++++|++++++
T Consensus        67 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  146 (232)
T 2rfa_A           67 PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD  146 (232)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             cccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence              24567899999999999999999999999999887665             566666666666666666666666665


Q ss_pred             CcccCCCCCCcHHHHHHHcCChhHH----HHHhhcCCCcc-----hhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCC
Q 009805          219 LTRERDDCGWTPLHHSAYLGLKDIT----ALLLEFDGSSA-----LILDKDRKMTALLMAASQGHESLAGTIIAHYPE  287 (525)
Q Consensus       219 ~~~~~d~~g~tpL~~A~~~g~~~~v----~~Ll~~~~~~~-----~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  287 (525)
                       ++.+|..|+||||+|+..|+.+++    ++|++++++..     +..+. .|.||||+|+..|+.+++++|+++++.
T Consensus       147 -~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~-~g~tpl~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          147 -IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNN-QGLTPFKLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             -TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             -CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCC-CCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence             455666666666666666666655    66666665442     22233 556666666666666666666665544

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.9e-33  Score=259.50  Aligned_cols=201  Identities=22%  Similarity=0.199  Sum_probs=180.2

Q ss_pred             CCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhh
Q 009805           33 NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCA  112 (525)
Q Consensus        33 ~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  112 (525)
                      .|.||||+|+..       |+.+++++|++   ..+.+++.+|..|.||||+|+..|+.+++++|++.+++...      
T Consensus         2 ~g~t~L~~A~~~-------g~~~~v~~Ll~---~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------   65 (232)
T 2rfa_A            2 IWESPLLLAAKE-------NDVQALSKLLK---FEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF------   65 (232)
T ss_dssp             CTTCHHHHHHHT-------TCHHHHHHHHT---TTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG------
T ss_pred             CCCCHHHHHHHc-------CCHHHHHHHHH---hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc------
Confidence            589999999999       99999999954   45778899999999999999999999999999999876311      


Q ss_pred             hhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCC------------CCCCchHHHHHHHcCCHHHHHHHH
Q 009805          113 KTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSA------------NVNGETPLYMAAARGSKKMVAEIL  180 (525)
Q Consensus       113 ~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~------------~~~g~tpL~~A~~~g~~~~v~~Ll  180 (525)
                          ...+.+|..|.||||+|+..|+.+++++|+++|++++...            +..|.||||+|+..|+.+++++|+
T Consensus        66 ----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  141 (232)
T 2rfa_A           66 ----EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI  141 (232)
T ss_dssp             ----CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHH
T ss_pred             ----ccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                0125578899999999999999999999999999977432            237999999999999999999999


Q ss_pred             HhcCCCCCCCCCCCcHHHHHHHcCCHHHH----HHHHHhcCcCc-----ccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 009805          181 EKCSSAAHDGPNGKTALHAAVNSYAADVV----EKLLAKKRHLT-----RERDDCGWTPLHHSAYLGLKDITALLLEFDG  251 (525)
Q Consensus       181 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~----~~Ll~~~~~~~-----~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~  251 (525)
                      ++|++++.+|..|.||||+|+..++.+++    ++|++.+++..     +.+|..|+||||+|+..|+.+++++|++++.
T Consensus       142 ~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~  221 (232)
T 2rfa_A          142 EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK  221 (232)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            99999999999999999999999999988    99999998743     6889999999999999999999999999887


Q ss_pred             Cc
Q 009805          252 SS  253 (525)
Q Consensus       252 ~~  253 (525)
                      ..
T Consensus       222 ~~  223 (232)
T 2rfa_A          222 HI  223 (232)
T ss_dssp             HC
T ss_pred             cc
Confidence            55

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=6.7e-35  Score=269.99  Aligned_cols=215  Identities=22%  Similarity=0.241  Sum_probs=122.4

Q ss_pred             ccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCC
Q 009805           73 QTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNF  152 (525)
Q Consensus        73 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  152 (525)
                      .+|.+|.||||+|+..|+.+++++|++.+.....           .++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-----------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   71 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLA-----------FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP   71 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CC-----------CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHH-----------HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3566777777777777777777777776543110           14556677777777777777777777777777766


Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCC------CCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCC-
Q 009805          153 PYSANVNGETPLYMAAARGSKKMVAEILEKCSSA------AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDD-  225 (525)
Q Consensus       153 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~-  225 (525)
                      + ..+..|.||||+|+..|+.+++++|+++++++      +..+..|.||||+|+..|+.+++++|++.+++ ++.++. 
T Consensus        72 ~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~  149 (236)
T 1ikn_D           72 E-LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPC  149 (236)
T ss_dssp             C-CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTT
T ss_pred             C-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCC
Confidence            5 55667777777777777777777777776542      33445555666666665556666666555555 334443 


Q ss_pred             CCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCcc-ccccCCCCchhHH
Q 009805          226 CGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECY-DLVDNGGWNVLHF  302 (525)
Q Consensus       226 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~-~~~d~~g~t~Lh~  302 (525)
                      .|.||||+|+..|+.+++++|+++|++. ...+. .|.||||+|+.+|+.+++++|++++++.. ...+..|.|+.+.
T Consensus       150 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~  225 (236)
T 1ikn_D          150 NGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTY-QGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDT  225 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCT-TCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccC-CCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhh
Confidence            5555555555555555555555555544 22222 45555555555555555555555554422 2344444444443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.5e-33  Score=265.44  Aligned_cols=214  Identities=22%  Similarity=0.263  Sum_probs=171.2

Q ss_pred             cccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCcccc----ccCCCCCcHHHHHHHc---CChhHHHHH
Q 009805           25 LRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLI----QTNAKGDSPLHAAAKC---GRPAVVKVL   97 (525)
Q Consensus        25 ~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~----~~~~~g~tpLh~A~~~---g~~~~v~~L   97 (525)
                      ...+..+..|.||||+|++.       |+.++++.|++.....+..+.    ..|..|.||||+|+..   |+.++|++|
T Consensus         4 a~~~~~d~~g~t~L~~A~~~-------g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~L   76 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFDAVAQ-------SNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL   76 (273)
T ss_dssp             -------CCCHHHHHHHHHT-------TCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHH
T ss_pred             ccCCCCCcccchHHHHHHHc-------CCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHH
Confidence            34445677999999999999       999999999886555555444    4688999999999987   999999999


Q ss_pred             HHhhhcCChhHhhhhhhhHHHhcC----ccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCC-------------CCC
Q 009805           98 IEFAKKQPTAMKCCAKTAWQMLGL----TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSAN-------------VNG  160 (525)
Q Consensus        98 l~~~~~~~~~~~~~~~~~~~~l~~----~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-------------~~g  160 (525)
                      ++.+++....        ..+++.    .|..|.||||+|+..|+.+++++|+++|++++....             ..|
T Consensus        77 l~~ga~~~~~--------~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g  148 (273)
T 2pnn_A           77 LDVARKTDSL--------KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFG  148 (273)
T ss_dssp             HHHHHHTTCH--------HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSC
T ss_pred             HHhhccccch--------hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCC
Confidence            9999763221        111232    567899999999999999999999999999874332             279


Q ss_pred             chHHHHHHHcCCHHHHHHHHH---hcCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHHhcCcCc------cc
Q 009805          161 ETPLYMAAARGSKKMVAEILE---KCSSAAHDGPNGKTALHAAVNSYA---------ADVVEKLLAKKRHLT------RE  222 (525)
Q Consensus       161 ~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~~~~~~------~~  222 (525)
                      .||||+|+..|+.+++++|++   +|++++.+|..|.||||+|+..++         .+++++|++.+++..      +.
T Consensus       149 ~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~  228 (273)
T 2pnn_A          149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEI  228 (273)
T ss_dssp             BSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccc
Confidence            999999999999999999999   889999999999999999999887         788899998888743      24


Q ss_pred             CCCCCCcHHHHHHHcCChhHHHHHhhcCCCc
Q 009805          223 RDDCGWTPLHHSAYLGLKDITALLLEFDGSS  253 (525)
Q Consensus       223 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  253 (525)
                      +|..|+||||+|+..|+.+++++|+++|+..
T Consensus       229 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~d  259 (273)
T 2pnn_A          229 TNRKGLTPLALAASSGKIGVLAYILQREIHE  259 (273)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-
T ss_pred             cCCCCCCHHHHHHHhChHHHHHHHHHCCCCC
Confidence            7788888888888888888888888888743

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.3e-32  Score=246.23  Aligned_cols=191  Identities=19%  Similarity=0.237  Sum_probs=102.4

Q ss_pred             CCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhh
Q 009805           33 NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCA  112 (525)
Q Consensus        33 ~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  112 (525)
                      .+.||||.|+..       |+.+.++.++   ...+.+++..|..|.||||+|+..|+.+++++|++.+++         
T Consensus         4 ~~~~~L~~A~~~-------g~~~~v~~ll---~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------   64 (201)
T 3hra_A            4 YEVGALLEAANQ-------RDTKKVKEIL---QDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD---------   64 (201)
T ss_dssp             CCTTHHHHHHHT-------TCHHHHHHHH---TCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---------
T ss_pred             ccccHHHHHHHh-------ccHHHHHHHH---HcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence            445555555555       5555555552   233334555555555555555555555555555555554         


Q ss_pred             hhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhc-CCCCCCCC
Q 009805          113 KTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKC-SSAAHDGP  191 (525)
Q Consensus       113 ~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~  191 (525)
                            ++.+|..|.||||+|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|+++| ++++.++.
T Consensus        65 ------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  138 (201)
T 3hra_A           65 ------INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND  138 (201)
T ss_dssp             ------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCT
T ss_pred             ------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC
Confidence                  33455555555555555555555555553322112244555555555555555555555555555 55555555


Q ss_pred             CCCcHHHHHHHcCC-----HHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhc
Q 009805          192 NGKTALHAAVNSYA-----ADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF  249 (525)
Q Consensus       192 ~g~t~L~~A~~~~~-----~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  249 (525)
                      .|.||||+|+..++     .+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus       139 ~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          139 FGYTALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             TSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             CCCCHHHHHHHhccchhhHHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            55555555555554     5555555555555 344555555555555555555555555544

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=4.9e-33  Score=260.77  Aligned_cols=209  Identities=24%  Similarity=0.249  Sum_probs=173.7

Q ss_pred             CCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccc----cCCCCCcHHHHHHHc---CChhHHHHHHHhhhcCC
Q 009805           33 NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQ----TNAKGDSPLHAAAKC---GRPAVVKVLIEFAKKQP  105 (525)
Q Consensus        33 ~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~----~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~  105 (525)
                      .|.||||.|+..       |+.+.++.|++.+...+.+++.    .|..|.||||+|+..   |+.+++++|++.+++..
T Consensus         1 ~G~t~L~~A~~~-------g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~   73 (256)
T 2etb_A            1 FDRDRLFSVVSR-------GVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSG   73 (256)
T ss_dssp             CCHHHHHHHHHH-------TCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTT
T ss_pred             CCccHHHHHHHc-------CCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCccc
Confidence            378999999999       9999777776655555777777    899999999999999   99999999999998742


Q ss_pred             hhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCC-------------CchHHHHHHHcCC
Q 009805          106 TAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-------------GETPLYMAAARGS  172 (525)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------------g~tpL~~A~~~g~  172 (525)
                      ....    ........+|..|.||||+|+..|+.+++++|+++|++++ ..+..             |.||||+|+..|+
T Consensus        74 ~~~~----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~  148 (256)
T 2etb_A           74 NPKP----LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQ  148 (256)
T ss_dssp             CSSC----GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC
T ss_pred             chhh----hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCC
Confidence            1000    0000011245789999999999999999999999999987 44443             9999999999999


Q ss_pred             HHHHHHHHH---hcCCCCCCCCCCCcHHHHHHH--cCCHH-------HHHHHHHhcCcCc------ccCCCCCCcHHHHH
Q 009805          173 KKMVAEILE---KCSSAAHDGPNGKTALHAAVN--SYAAD-------VVEKLLAKKRHLT------RERDDCGWTPLHHS  234 (525)
Q Consensus       173 ~~~v~~Ll~---~~~~~~~~~~~g~t~L~~A~~--~~~~~-------~~~~Ll~~~~~~~------~~~d~~g~tpL~~A  234 (525)
                      .+++++|++   +|++++.+|..|.||||+|+.  .++.+       ++++|++.+++..      +.+|..|+||||+|
T Consensus       149 ~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A  228 (256)
T 2etb_A          149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA  228 (256)
T ss_dssp             HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH
Confidence            999999999   899999999999999999998  78888       9999999988842      77888899999999


Q ss_pred             HHcCChhHHHHHhhcCCCc
Q 009805          235 AYLGLKDITALLLEFDGSS  253 (525)
Q Consensus       235 ~~~g~~~~v~~Ll~~~~~~  253 (525)
                      +..|+.+++++|+++|...
T Consensus       229 ~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          229 AKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHhCCCCC
Confidence            9999999999999887654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6.3e-32  Score=243.41  Aligned_cols=193  Identities=17%  Similarity=0.167  Sum_probs=174.3

Q ss_pred             cCCCChHhHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHH
Q 009805          123 NEEENTALHEAVQCGNLDAVKILMEAGP-NFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAV  201 (525)
Q Consensus       123 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  201 (525)
                      +..+.||||.|+..|+.+.++.|++.++ +++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~   80 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVD-EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG   80 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3568899999999999999999999987 544 77889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCC-----HH
Q 009805          202 NSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGH-----ES  276 (525)
Q Consensus       202 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~-----~~  276 (525)
                      ..++.+++++|++.+....+..|..|.||||+|+..|+.+++++|++++.......+. .|.||||+|+..++     .+
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~~  159 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND-FGYTALIEAVGLREGNQLYQD  159 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCT-TSCCHHHHHHHSSCCSHHHHH
T ss_pred             HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC-CCCCHHHHHHHhccchhhHHH
Confidence            9999999999997766557889999999999999999999999999998444355555 79999999999888     89


Q ss_pred             HHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhC
Q 009805          277 LAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKD  318 (525)
Q Consensus       277 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~  318 (525)
                      ++++|++++++ ++.+|..|+||||+|+..++.++++.|++.
T Consensus       160 ~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          160 IVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            99999999988 688999999999999999999999999874

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=3.3e-33  Score=264.55  Aligned_cols=220  Identities=17%  Similarity=0.185  Sum_probs=163.0

Q ss_pred             ccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHc---CCHHHHHHHHh
Q 009805           71 LIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC---GNLDAVKILME  147 (525)
Q Consensus        71 l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~  147 (525)
                      ....|..|.||||.|++.|+.++|+.|++.+.+......       ......|..|.||||+|+..   |+.+++++|++
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-------~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~   78 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLT-------DSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLD   78 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTT-------SGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHH
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccC-------CcccccCcCCCCHHHHHHHHHhcCChHHHHHHHH
Confidence            345788999999999999999999999997654322110       00114588999999999987   99999999999


Q ss_pred             cCCCCC----------CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCC--------------CCCcHHHHHHHc
Q 009805          148 AGPNFP----------YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP--------------NGKTALHAAVNS  203 (525)
Q Consensus       148 ~~~~~~----------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~--------------~g~t~L~~A~~~  203 (525)
                      +|++..          ...|..|.||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+..
T Consensus        79 ~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~  158 (273)
T 2pnn_A           79 VARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT  158 (273)
T ss_dssp             HHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHT
T ss_pred             hhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHc
Confidence            986421          12466899999999999999999999999999998886              688888888888


Q ss_pred             CCHHHHHHHHH---hcCcCcccCCCCCCcHHHHHHHcCC---------hhHHHHHhhcCCCcch------hcccCCCCcH
Q 009805          204 YAADVVEKLLA---KKRHLTRERDDCGWTPLHHSAYLGL---------KDITALLLEFDGSSAL------ILDKDRKMTA  265 (525)
Q Consensus       204 ~~~~~~~~Ll~---~~~~~~~~~d~~g~tpL~~A~~~g~---------~~~v~~Ll~~~~~~~~------~~~~~~g~tp  265 (525)
                      |+.+++++|++   .+.+ ++.+|..|+||||+|+..|+         .+++++|+++|++...      ..+. .|.||
T Consensus       159 g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~-~g~Tp  236 (273)
T 2pnn_A          159 NQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR-KGLTP  236 (273)
T ss_dssp             TCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT-TSCCH
T ss_pred             CCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCC-CCCCH
Confidence            88888888888   6776 57788888888888888877         6788888887776532      2343 67788


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCccccccCCCCch
Q 009805          266 LLMAASQGHESLAGTIIAHYPECYDLVDNGGWNV  299 (525)
Q Consensus       266 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~  299 (525)
                      ||+|+..|+.+++++|+++++.........+++|
T Consensus       237 L~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~  270 (273)
T 2pnn_A          237 LALAASSGKIGVLAYILQREIHEPECRHAAAHHH  270 (273)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred             HHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence            8888888888888888888774355555555544

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=9.9e-33  Score=258.72  Aligned_cols=194  Identities=21%  Similarity=0.182  Sum_probs=150.5

Q ss_pred             CCCcHHHHHHHcCChh----HHHHHHHhhhcCChhHhhhhhhhHHHhcC----ccCCCChHhHHHHHc---CCHHHHHHH
Q 009805           77 KGDSPLHAAAKCGRPA----VVKVLIEFAKKQPTAMKCCAKTAWQMLGL----TNEEENTALHEAVQC---GNLDAVKIL  145 (525)
Q Consensus        77 ~g~tpLh~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~----~~~~g~t~Lh~A~~~---g~~~~v~~L  145 (525)
                      .|+||||.|++.|+.+    ++++|++.+.+               ++.    +|..|.||||+|+..   |+.+++++|
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~---------------i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~L   65 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY---------------LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL   65 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC---------------TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------cccccccCCCCCCCHHHHHHHccccchHHHHHHH
Confidence            3789999999999997    55666667776               444    799999999999999   999999999


Q ss_pred             HhcCCCCCCC----------CCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCC-------------CCcHHHHHHH
Q 009805          146 MEAGPNFPYS----------ANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPN-------------GKTALHAAVN  202 (525)
Q Consensus       146 l~~~~~~~~~----------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-------------g~t~L~~A~~  202 (525)
                      ++.|++....          .|..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+.
T Consensus        66 l~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~  145 (256)
T 2etb_A           66 LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC  145 (256)
T ss_dssp             HHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHH
T ss_pred             HhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHH
Confidence            9998775422          2467999999999999999999999999999988876             7778888877


Q ss_pred             cCCHHHHHHHHH---hcCcCcccCCCCCCcHHHHHHH--cCChh-------HHHHHhhcCCCcc------hhcccCCCCc
Q 009805          203 SYAADVVEKLLA---KKRHLTRERDDCGWTPLHHSAY--LGLKD-------ITALLLEFDGSSA------LILDKDRKMT  264 (525)
Q Consensus       203 ~~~~~~~~~Ll~---~~~~~~~~~d~~g~tpL~~A~~--~g~~~-------~v~~Ll~~~~~~~------~~~~~~~g~t  264 (525)
                      .|+.+++++|++   .+.+ ++.+|..|+||||+|+.  .++.+       ++++|+++|++..      ...+. .|.|
T Consensus       146 ~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~-~g~t  223 (256)
T 2etb_A          146 TKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH-QGLT  223 (256)
T ss_dssp             TTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCT-TSCC
T ss_pred             cCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCC-CCCC
Confidence            777788888777   6666 56777777777777777  55666       7777777666542      22333 5666


Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCC
Q 009805          265 ALLMAASQGHESLAGTIIAHYPE  287 (525)
Q Consensus       265 pL~~A~~~g~~~~v~~Ll~~~~~  287 (525)
                      |||+|+..|+.+++++|++++++
T Consensus       224 pL~~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          224 PLKLAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHhCCCC
Confidence            66666666666666666666544

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.98  E-value=1.4e-31  Score=232.66  Aligned_cols=157  Identities=29%  Similarity=0.419  Sum_probs=119.1

Q ss_pred             cHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q 009805           80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN  159 (525)
Q Consensus        80 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  159 (525)
                      ++|+.||+.|+.++|+.|++.|++               ++.+|.+|.||||+|+..++.+++++|+++|++++ ..|..
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad---------------vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~   69 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD---------------VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSD   69 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC---------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccC
Confidence            367778888888888888877776               56677778888888888888888888888777765 56777


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCC
Q 009805          160 GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGL  239 (525)
Q Consensus       160 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~  239 (525)
                      |+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+
T Consensus        70 g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~  148 (169)
T 4gpm_A           70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGN  148 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCC
Confidence            78888888888888888888888877777777788888888888888888888877777 56777777777777777777


Q ss_pred             hhHHHHHhhcCCCc
Q 009805          240 KDITALLLEFDGSS  253 (525)
Q Consensus       240 ~~~v~~Ll~~~~~~  253 (525)
                      .+++++|+++|++.
T Consensus       149 ~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          149 EEVVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHHHTC----
T ss_pred             HHHHHHHHHCCCCc
Confidence            77777777777765

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.98  E-value=4.8e-32  Score=235.63  Aligned_cols=147  Identities=27%  Similarity=0.407  Sum_probs=69.6

Q ss_pred             CchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhH
Q 009805           52 GESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH  131 (525)
Q Consensus        52 g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh  131 (525)
                      |+.++|++|++    .+.+++.+|.+|.||||+|+..++.+++++|++.+++               ++.+|.+|.||||
T Consensus        15 G~~~~v~~Ll~----~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad---------------~~~~d~~g~TpLh   75 (169)
T 4gpm_A           15 GNKDRVKDLIE----NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD---------------VNAKDSDGRTPLH   75 (169)
T ss_dssp             TCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------------TTCCCTTSCCHHH
T ss_pred             CCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc---------------hhhhccCCCCHHH
Confidence            44444444433    1334444444444444444444444444444444444               3344444455555


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 009805          132 EAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEK  211 (525)
Q Consensus       132 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  211 (525)
                      +|+..|+.+++++|+++|++++ ..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|++.|+.+++++
T Consensus        76 ~A~~~g~~~~v~~Ll~~gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~  154 (169)
T 4gpm_A           76 HAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKL  154 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            5555555555555555444443 344444555555555555555555555555544445555555555555555555555


Q ss_pred             HHHhcCc
Q 009805          212 LLAKKRH  218 (525)
Q Consensus       212 Ll~~~~~  218 (525)
                      |+++|++
T Consensus       155 Ll~~GA~  161 (169)
T 4gpm_A          155 LEKQGGW  161 (169)
T ss_dssp             HHTC---
T ss_pred             HHHCCCC
Confidence            5554444

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.7e-31  Score=250.89  Aligned_cols=209  Identities=22%  Similarity=0.246  Sum_probs=172.4

Q ss_pred             CCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccC----CCCCcHHHHHH---HcCChhHHHHHHHhhhcCC
Q 009805           33 NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTN----AKGDSPLHAAA---KCGRPAVVKVLIEFAKKQP  105 (525)
Q Consensus        33 ~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~----~~g~tpLh~A~---~~g~~~~v~~Ll~~~~~~~  105 (525)
                      .+.++||.|++.       |+.+.++.|++.+...+..++..+    ..|.||||+|+   +.|+.+++++|++.+++..
T Consensus         4 ~~~~~L~~A~~~-------g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~   76 (260)
T 3jxi_A            4 FNRPILFDIVSR-------GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTG   76 (260)
T ss_dssp             CCHHHHHHHHHH-------TCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHh-------CCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccccc
Confidence            678999999999       999988888775555566666554    77999999999   7799999999999987643


Q ss_pred             hhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCC--------------CCCchHHHHHHHcC
Q 009805          106 TAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSAN--------------VNGETPLYMAAARG  171 (525)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~--------------~~g~tpL~~A~~~g  171 (525)
                      ....    .....++..|..|.||||+|+..|+.+++++|+++|++++ ..+              ..|.||||+|+..|
T Consensus        77 ~~~~----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g  151 (260)
T 3jxi_A           77 NMRE----FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTN  151 (260)
T ss_dssp             CHHH----HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTT
T ss_pred             chHh----hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCCHHHHHHHcC
Confidence            2110    0011134456689999999999999999999999999987 444              57999999999999


Q ss_pred             CHHHHHHHHH---hcCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHHhcCcCc------ccCCCCCCcHHHH
Q 009805          172 SKKMVAEILE---KCSSAAHDGPNGKTALHAAVNSYA---------ADVVEKLLAKKRHLT------RERDDCGWTPLHH  233 (525)
Q Consensus       172 ~~~~v~~Ll~---~~~~~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~~~~~~------~~~d~~g~tpL~~  233 (525)
                      +.+++++|++   +|++++.+|..|.||||+|+..++         .+++++|++.+++..      +.+|..|+||||+
T Consensus       152 ~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~  231 (260)
T 3jxi_A          152 QPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM  231 (260)
T ss_dssp             CHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred             CHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHH
Confidence            9999999999   899999999999999999998777         689999999988742      5688888888888


Q ss_pred             HHHcCChhHHHHHhhcCCCc
Q 009805          234 SAYLGLKDITALLLEFDGSS  253 (525)
Q Consensus       234 A~~~g~~~~v~~Ll~~~~~~  253 (525)
                      |+..|+.+++++|+++|+..
T Consensus       232 A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          232 AAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhCCCc
Confidence            88888888888888887654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=6.3e-31  Score=247.00  Aligned_cols=194  Identities=19%  Similarity=0.217  Sum_probs=169.4

Q ss_pred             hHHHHHHHcCCcchhhhhhh----hcccccccc----CCCCchhhhhh---hcccccccCCchhhHHHHHHHHHhCC---
Q 009805            3 PKLYEAATNGEIEPFNGIAK----DNLRSIVTH----NNKHTVLHVNI---ARQSLKNKEGESVSTKFVEQILEICP---   68 (525)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~----~~~~~~~~~----~~g~t~Lh~A~---~~~~~~~~~g~~~~~~~ll~~~~~~~---   68 (525)
                      ++||.||+.|+.+.++.|++    .+.+.+..+    ..|.||||+|+   +.       |+.+++++|++......   
T Consensus         7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-------g~~~~v~~Ll~~g~~~~~~~   79 (260)
T 3jxi_A            7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA-------GRNDTIPILLDIAEKTGNMR   79 (260)
T ss_dssp             HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBT-------TBCTHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhc-------CCHHHHHHHHHhcccccchH
Confidence            57999999999998888777    677766554    56999999998   78       99999999988533211   


Q ss_pred             ----ccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCcc--------------CCCChHh
Q 009805           69 ----SLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTN--------------EEENTAL  130 (525)
Q Consensus        69 ----~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~--------------~~g~t~L  130 (525)
                          ......|..|.||||+|+..|+.++|++|++.+++               ++.++              ..|.|||
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------------~~~~~~~~~~~~~~~~~~~~~g~tpL  144 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD---------------VHAQARGRFFQPKDEGGYFYFGELPL  144 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC---------------TTCCCEECCCSSSCCCCSCCSCSSHH
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC---------------cCccccccccCcccccccccCCCCHH
Confidence                22445566899999999999999999999999987               44455              6899999


Q ss_pred             HHHHHcCCHHHHHHHHh---cCCCCCCCCCCCCchHHHHHHHcCC---------HHHHHHHHHhcCCC-------CCCCC
Q 009805          131 HEAVQCGNLDAVKILME---AGPNFPYSANVNGETPLYMAAARGS---------KKMVAEILEKCSSA-------AHDGP  191 (525)
Q Consensus       131 h~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~g~tpL~~A~~~g~---------~~~v~~Ll~~~~~~-------~~~~~  191 (525)
                      |+|+..|+.+++++|++   +|++++ ..|..|+||||+|+..|+         .+++++|+++|+++       +.+|.
T Consensus       145 ~~A~~~g~~~~v~~Ll~~~~~ga~~~-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~  223 (260)
T 3jxi_A          145 SLAACTNQPHIVHYLTENGHKQADLR-RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN  223 (260)
T ss_dssp             HHHHHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT
T ss_pred             HHHHHcCCHHHHHHHHhccccCCCCc-ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccC
Confidence            99999999999999999   899987 788899999999999888         79999999999888       67999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCcC
Q 009805          192 NGKTALHAAVNSYAADVVEKLLAKKRHL  219 (525)
Q Consensus       192 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  219 (525)
                      .|.||||+|+..|+.+++++|++++++.
T Consensus       224 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          224 DGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence            9999999999999999999999998774

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.7e-29  Score=225.73  Aligned_cols=164  Identities=25%  Similarity=0.298  Sum_probs=148.7

Q ss_pred             cccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcC
Q 009805           70 LLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAG  149 (525)
Q Consensus        70 ~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  149 (525)
                      .++.+|..|.||||+|+..|+.+++++|++.+.+               ++.+|..|.||||+|+..|+.+++++|+++|
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   91 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK---------------LEDKDIEGSTALIWAVKNNRLGIAEKLLSKG   91 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc---------------cccccccCccHHHHHHHcCCHHHHHHHHHCC
Confidence            3456889999999999999999999999999876               5678889999999999999999999999999


Q ss_pred             CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCc
Q 009805          150 PNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWT  229 (525)
Q Consensus       150 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t  229 (525)
                      ++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+++ ++.+|..|.|
T Consensus        92 ~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t  169 (192)
T 2rfm_A           92 SNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLT  169 (192)
T ss_dssp             CCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCB
T ss_pred             CCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCC
Confidence            9876 6788899999999999999999999999999999999999999999999999999999999888 6788889999


Q ss_pred             HHHHHHHcCChhHHHHHhhcC
Q 009805          230 PLHHSAYLGLKDITALLLEFD  250 (525)
Q Consensus       230 pL~~A~~~g~~~~v~~Ll~~~  250 (525)
                      |||+|+..|+.+++++|++++
T Consensus       170 ~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          170 AEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHhcc
Confidence            999999999999999998764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.9e-29  Score=238.61  Aligned_cols=192  Identities=25%  Similarity=0.299  Sum_probs=142.4

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 009805           78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSAN  157 (525)
Q Consensus        78 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  157 (525)
                      +.+++|.|+..|+.+.++.+++.+.+             ..++.+|.+|.||||+|+..|+.+++++|++.|+......+
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~-------------~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~  142 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLD-------------YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQN  142 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHH-------------HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHh-------------hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCC
Confidence            45677788888888888887776543             23667788888888888888888888888888873233677


Q ss_pred             CCCchHHHHHH-----HcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHH
Q 009805          158 VNGETPLYMAA-----ARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLH  232 (525)
Q Consensus       158 ~~g~tpL~~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~  232 (525)
                      ..|.||||+|+     ..++.+++++|++.|.+.+..+..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||
T Consensus       143 ~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh  221 (276)
T 4hbd_A          143 RAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALM  221 (276)
T ss_dssp             TTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             CCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHH
Confidence            77888888887     55777788888888877777777788888888888888888888887777 5677777777777


Q ss_pred             HHHHcCChhHHHHHhh-cCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhC
Q 009805          233 HSAYLGLKDITALLLE-FDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHY  285 (525)
Q Consensus       233 ~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  285 (525)
                      +|+..|+.+++++|++ .|.+. +..+. .|.||||+|+..|+.+++++|+++.
T Consensus       222 ~A~~~g~~~iv~~Ll~~~gad~-~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          222 CACEHGHKEIAGLLLAVPSCDI-SLTDR-DGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHTCHHHHHHHHTSTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHCCCHHHHHHHHhcCCCCC-cCcCC-CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            7777777777777777 56655 33444 5777777777777777777777664

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.1e-29  Score=240.29  Aligned_cols=194  Identities=19%  Similarity=0.215  Sum_probs=174.7

Q ss_pred             CCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhh
Q 009805           33 NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCA  112 (525)
Q Consensus        33 ~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  112 (525)
                      ...+++|.|+..       |+.+.++.+++...  ...++.+|.+|.||||+|+..|+.++|++|++.++..        
T Consensus        75 ~~~~~l~~a~~~-------~~~~~~~~l~~~~~--~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~--------  137 (276)
T 4hbd_A           75 ACRSDAHPELVR-------RHLVTFRAMSARLL--DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK--------  137 (276)
T ss_dssp             HHSTTCCHHHHH-------HHHHHHHHHCHHHH--HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC--------
T ss_pred             HhccCCCHHHHH-------HHHHHHHHHHHHHH--hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc--------
Confidence            456889999999       99999999866321  2246788999999999999999999999999999721        


Q ss_pred             hhhHHHhcCccCCCChHhHHHH-----HcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCC
Q 009805          113 KTAWQMLGLTNEEENTALHEAV-----QCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA  187 (525)
Q Consensus       113 ~~~~~~l~~~~~~g~t~Lh~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  187 (525)
                            ++..|..|.||||+|+     ..++.+++++|++.|.... ..+..|.||||+|+..|+.+++++|+++|++++
T Consensus       138 ------~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n  210 (276)
T 4hbd_A          138 ------VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVN  210 (276)
T ss_dssp             ------TTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             ------CCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence                  6678999999999999     6689999999999997765 678889999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHH-hcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 009805          188 HDGPNGKTALHAAVNSYAADVVEKLLA-KKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG  251 (525)
Q Consensus       188 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~  251 (525)
                      .+|..|.||||+|+..|+.+++++|++ .+.+ ++.+|..|.||||+|+..|+.+++++|+++..
T Consensus       211 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          211 VQDDDGSTALMCACEHGHKEIAGLLLAVPSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            999999999999999999999999999 6777 68899999999999999999999999998753

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=5.1e-29  Score=218.43  Aligned_cols=169  Identities=22%  Similarity=0.230  Sum_probs=105.5

Q ss_pred             CchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhh
Q 009805           35 HTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKT  114 (525)
Q Consensus        35 ~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  114 (525)
                      .+|||.|+..       |+.+++++++   ...+..++.+|..|.||||+|+..|+.+++++|++.+++           
T Consensus         3 ~~~L~~A~~~-------g~~~~v~~ll---~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------   61 (172)
T 3v30_A            3 SLSIHQLAAQ-------GELDQLKEHL---RKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-----------   61 (172)
T ss_dssp             -CCHHHHHHT-------TCHHHHHHHH---TTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-----------
T ss_pred             hhhHHHHHHc-------CCHHHHHHHH---HcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence            4666666666       6666666663   334444566666666666666666666666666666655           


Q ss_pred             hHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCC
Q 009805          115 AWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGK  194 (525)
Q Consensus       115 ~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~  194 (525)
                          ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        62 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  136 (172)
T 3v30_A           62 ----PHILAKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGY  136 (172)
T ss_dssp             ----TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ----chhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence                44556666666666666666666666666666654 4556666666666666666666666666666666666666


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcH
Q 009805          195 TALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTP  230 (525)
Q Consensus       195 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp  230 (525)
                      ||||+|+..++.+++++|++++++ ....+..|.||
T Consensus       137 t~l~~A~~~~~~~~~~~L~~~~~~-~~~~~~~~~~p  171 (172)
T 3v30_A          137 TPMDLAVALGYRKVQQVIENHILK-LFQSNLVPADP  171 (172)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHHHH-HSCC-------
T ss_pred             CHHHHHHHhCcHHHHHHHHHHHHH-HhcccCCCCCC
Confidence            666666666666666666666665 23444444443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=6.2e-29  Score=222.07  Aligned_cols=164  Identities=21%  Similarity=0.210  Sum_probs=153.1

Q ss_pred             ccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCC
Q 009805           26 RSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQP  105 (525)
Q Consensus        26 ~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  105 (525)
                      ..+.++..|.||||+|+..       |+.+++++|++.    +.+++..|..|.||||+|+..|+.+++++|++.+.+  
T Consensus        27 ~~n~~d~~g~t~L~~A~~~-------g~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--   93 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACML-------GMENAIDKLVEN----FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN--   93 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHH-------TCGGGHHHHHHH----HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC--
T ss_pred             HHhCcCCCCCCHHHHHHHc-------CCHHHHHHHHHh----ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCC--
Confidence            3456788999999999999       999999999874    456778899999999999999999999999999987  


Q ss_pred             hhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCC
Q 009805          106 TAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSS  185 (525)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  185 (525)
                                   ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++
T Consensus        94 -------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  159 (192)
T 2rfm_A           94 -------------VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGAD  159 (192)
T ss_dssp             -------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             -------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence                         66789999999999999999999999999999987 7788999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 009805          186 AAHDGPNGKTALHAAVNSYAADVVEKLLAKK  216 (525)
Q Consensus       186 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  216 (525)
                      ++.+|..|.||||+|+..++.+++++|++.+
T Consensus       160 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          160 ISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            9999999999999999999999999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=3.1e-29  Score=217.46  Aligned_cols=158  Identities=21%  Similarity=0.185  Sum_probs=106.7

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 009805           77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSA  156 (525)
Q Consensus        77 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  156 (525)
                      ...||||.|+..|+.+++++|++.+.+               ++.+|..|.||||+|+. |+.+++++|+++|++++ ..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~---------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~   66 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVN---------------VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LK   66 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCC---------------TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCC---------------ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CC
Confidence            345677777777777777777766655               44566667777777666 77777777777766655 45


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHH
Q 009805          157 NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY  236 (525)
Q Consensus       157 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~  236 (525)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+++..+.+|..|.||||+|+.
T Consensus        67 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~  146 (162)
T 1ihb_A           67 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL  146 (162)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHH
Confidence            66677777777777777777777777777766667777777777777777777777777666556666666666666666


Q ss_pred             cCChhHHHHHhhcCC
Q 009805          237 LGLKDITALLLEFDG  251 (525)
Q Consensus       237 ~g~~~~v~~Ll~~~~  251 (525)
                      .|+.+++++|+++|+
T Consensus       147 ~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          147 YGRNEVVSLMQANGA  161 (162)
T ss_dssp             TTCHHHHHHHHHTC-
T ss_pred             cCCHHHHHHHHHhCC
Confidence            666666666666654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=1.5e-31  Score=262.00  Aligned_cols=265  Identities=16%  Similarity=0.099  Sum_probs=171.0

Q ss_pred             CchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhH
Q 009805           52 GESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALH  131 (525)
Q Consensus        52 g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh  131 (525)
                      ++.++++++.+           .+.++.||||+|++.|+.++|++|++.++....            ....+..|.||||
T Consensus        77 ~~~~~~~~l~~-----------~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~------------~~~~~~~~~tpL~  133 (376)
T 2aja_A           77 NAKQLWSDAHK-----------KGIKSEVICFVAAITGCSSALDTLCLLLTSDEI------------VKVIQAENYQAFR  133 (376)
T ss_dssp             TCTTHHHHHHH-----------HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS------------CC--CHHHHHHHH
T ss_pred             CCHHHHHHHHH-----------cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHH------------HHHhccCCCCHHH
Confidence            55666666644           334556888888888888888888888763110            1123456778888


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCC--CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCC--CCCCCCcHHHHHH-HcCCH
Q 009805          132 EAVQCGNLDAVKILMEAGPNFP--YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAH--DGPNGKTALHAAV-NSYAA  206 (525)
Q Consensus       132 ~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~-~~~~~  206 (525)
                      +|+..|+.++|++|+++|++..  ...+.. .||||+|+..|+.+++++|+++|++++.  .|..|.||||+|+ ..|+.
T Consensus       134 ~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~  212 (376)
T 2aja_A          134 LAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH  212 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred             HHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCH
Confidence            8888888888888888886421  011222 7888888888888888888888887766  6777888888888 88888


Q ss_pred             HHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHH--------
Q 009805          207 DVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLA--------  278 (525)
Q Consensus       207 ~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v--------  278 (525)
                      +++++|++.+..        |.||||+|+..|+.+++++|++++.+.. .     ..++++.|+..|+.+++        
T Consensus       213 eiv~~Ll~~ga~--------~~taL~~Aa~~g~~evv~lL~~~ga~~~-~-----~~~~l~~A~~~g~~~vv~~~~~~~~  278 (376)
T 2aja_A          213 NVINFLLDCPVM--------LAYAEIHEFEYGEKYVNPFIARHVNRLK-E-----MHDAFKLSNPDGVFDLVTKSECLQG  278 (376)
T ss_dssp             HHHHHHTTSHHH--------HHHHHHCTTTTTTTTHHHHHHHHHHHHH-H-----HHTTTTTTSSSSCCCCSSHHHHHHH
T ss_pred             HHHHHHHhCCCc--------cchHHHHHHHCCCHHHHHHHHhcCcccc-c-----ccHHHHHHHHCCChhhhcHHhhhhh
Confidence            888888876532        6788888888888888888888776542 1     12467777777776633        


Q ss_pred             ----HHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCcccccc--ccccCCCCChHHHHHHhcCchhHHHHHH
Q 009805          279 ----GTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSF--IDEKNEMGNTPLHILATLSARTCNEIVR  352 (525)
Q Consensus       279 ----~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~--in~~d~~G~T~Lh~A~~~~~~~~~~ll~  352 (525)
                          +.|+.++..                   +..+.+++|++....+..  .....+.++||||+|++.|...+..+|.
T Consensus       279 ~~~~~~li~~~~~-------------------~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl  339 (376)
T 2aja_A          279 FYMLRNLIRRNDE-------------------VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL  339 (376)
T ss_dssp             HHHHHHHHHHCCG-------------------GGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHT
T ss_pred             HHHHHHHHHcchh-------------------hHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHH
Confidence                334443311                   124556666664332211  2334567889999999999877744444


Q ss_pred             HhCCCChHHHhccCCChHHHHhhcC
Q 009805          353 QIGKGDTQAVNKKKISVKHIELYGC  377 (525)
Q Consensus       353 ~~~~~d~~~~n~~g~t~l~~a~~~~  377 (525)
                      +    ...+++..|+|++++|..++
T Consensus       340 ~----~~~v~~~~~~~~~~~~~~~~  360 (376)
T 2aja_A          340 S----IPSVLALTKANNYYINETGG  360 (376)
T ss_dssp             T----SHHHHHSCC-----------
T ss_pred             c----ChHHHHHHHHhccccccccc
Confidence            2    24789999999999998654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.2e-28  Score=214.80  Aligned_cols=159  Identities=21%  Similarity=0.254  Sum_probs=125.7

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 009805           77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSA  156 (525)
Q Consensus        77 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  156 (525)
                      .|.||||.|+..|+.+++++|++.+.+               ++.+|..|.||||+|+..|+.+++++|+++|++++ ..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~   65 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV---------------INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LL   65 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC---------------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-Cc
Confidence            467888888888888888888887765               55677788888888888888888888888887765 56


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHH
Q 009805          157 NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY  236 (525)
Q Consensus       157 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~  236 (525)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+++ ++.+|..|.||||+|+.
T Consensus        66 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~  144 (167)
T 3v31_A           66 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVA  144 (167)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            67788888888888888888888888888888888888888888888888888888887777 46677777888888888


Q ss_pred             cCChhHHHHHhhcCCC
Q 009805          237 LGLKDITALLLEFDGS  252 (525)
Q Consensus       237 ~g~~~~v~~Ll~~~~~  252 (525)
                      .|+.+++++|++++.+
T Consensus       145 ~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          145 LGYRSVQQVIESHLLK  160 (167)
T ss_dssp             HTCHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHH
Confidence            7777777777776543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.6e-28  Score=214.50  Aligned_cols=160  Identities=26%  Similarity=0.359  Sum_probs=120.6

Q ss_pred             cCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCC
Q 009805           74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFP  153 (525)
Q Consensus        74 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  153 (525)
                      ....+.||||.|++.|+.++|++|++.+.+               ++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   74 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGAD---------------VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN   74 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCC---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCC---------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            445566778888888888888888887766               55667778888888888888888888888777765


Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHH
Q 009805          154 YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHH  233 (525)
Q Consensus       154 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~  233 (525)
                       ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++++++ .+.+|..|.||||+
T Consensus        75 -~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~  152 (169)
T 2y1l_E           75 -AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDI  152 (169)
T ss_dssp             -CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             -ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHH
Confidence             5666778888888888888888888888877777777788888888888888888888877777 46677777777777


Q ss_pred             HHHcCChhHHHHHhhcC
Q 009805          234 SAYLGLKDITALLLEFD  250 (525)
Q Consensus       234 A~~~g~~~~v~~Ll~~~  250 (525)
                      |+..|+.+++++|++.|
T Consensus       153 A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          153 SIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHTTCHHHHHHHHTC-
T ss_pred             HHHhCCHHHHHHHHHcC
Confidence            77777777777777654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.8e-28  Score=213.73  Aligned_cols=161  Identities=25%  Similarity=0.271  Sum_probs=151.2

Q ss_pred             CCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhh
Q 009805           33 NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCA  112 (525)
Q Consensus        33 ~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  112 (525)
                      .|.||||.|+..       |+.+++++|++.    +.+++.+|..|.||||+|+..|+.+++++|++.+.+         
T Consensus         2 ~~~t~L~~A~~~-------g~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------   61 (167)
T 3v31_A            2 ANSLSVHQLAAQ-------GEMLYLATRIEQ----ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD---------   61 (167)
T ss_dssp             TTCCCHHHHHHT-------TCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------
T ss_pred             CCcchHHHHHHC-------CCHHHHHHHHHc----CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---------
Confidence            588999999999       999999999774    566888999999999999999999999999999887         


Q ss_pred             hhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCC
Q 009805          113 KTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPN  192 (525)
Q Consensus       113 ~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  192 (525)
                            ++..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..
T Consensus        62 ------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  134 (167)
T 3v31_A           62 ------PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS  134 (167)
T ss_dssp             ------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ------CCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence                  56789999999999999999999999999999987 77889999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCcCc
Q 009805          193 GKTALHAAVNSYAADVVEKLLAKKRHLT  220 (525)
Q Consensus       193 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  220 (525)
                      |.||||+|+..|+.+++++|++++..+.
T Consensus       135 g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          135 GYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987643

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.3e-28  Score=215.89  Aligned_cols=170  Identities=21%  Similarity=0.153  Sum_probs=136.2

Q ss_pred             CChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCC
Q 009805          126 ENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYA  205 (525)
Q Consensus       126 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  205 (525)
                      +.||||.|+..|+.++++.|++.+++.....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            45889999999999999999999887555778889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhC
Q 009805          206 ADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHY  285 (525)
Q Consensus       206 ~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  285 (525)
                      .+++++|++.+.+ .+.+|..|.||||+|+..|+.+++++|+++|++. ...+. .|.||||+|+..|+.+++++|++++
T Consensus        82 ~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           82 TDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEAD-SGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             HHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCC-CCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            9999999988887 5777888888888888888888888888888776 33444 6788888888888888888888887


Q ss_pred             CCccccccCCCCch
Q 009805          286 PECYDLVDNGGWNV  299 (525)
Q Consensus       286 ~~~~~~~d~~g~t~  299 (525)
                      ++ ....+..|.||
T Consensus       159 ~~-~~~~~~~~~~p  171 (172)
T 3v30_A          159 LK-LFQSNLVPADP  171 (172)
T ss_dssp             HH-HSCC-------
T ss_pred             HH-HhcccCCCCCC
Confidence            76 44455556554

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.8e-28  Score=212.56  Aligned_cols=159  Identities=20%  Similarity=0.234  Sum_probs=136.1

Q ss_pred             CCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcC
Q 009805          125 EENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSY  204 (525)
Q Consensus       125 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  204 (525)
                      ...||||.|+..|+.+++++|+++|++++ ..+..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            45689999999999999999999998876 677889999999988 9999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhh
Q 009805          205 AADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAH  284 (525)
Q Consensus       205 ~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  284 (525)
                      +.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++++++.....+. .|.||||+|+..|+.+++++|+++
T Consensus        82 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           82 FLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH-KGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHHh
Confidence            99999999998887 5778888889999999888888999988888875455555 688888888888888888888888


Q ss_pred             CCC
Q 009805          285 YPE  287 (525)
Q Consensus       285 ~~~  287 (525)
                      |++
T Consensus       160 GAd  162 (162)
T 1ihb_A          160 GAG  162 (162)
T ss_dssp             C--
T ss_pred             CCC
Confidence            764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=3.7e-31  Score=242.86  Aligned_cols=198  Identities=17%  Similarity=0.167  Sum_probs=123.7

Q ss_pred             HHHHhcCCCCC--CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCc
Q 009805          143 KILMEAGPNFP--YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLT  220 (525)
Q Consensus       143 ~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  220 (525)
                      +.|+++|++..  ...+..+.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.+++ +
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~   80 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-V   80 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-T
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-C
Confidence            45555555433  22344556666666666666666666666666666666666666666666666666666666666 4


Q ss_pred             ccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHH--HhcCCHHHHHHHHhhCCCccccccCCCCc
Q 009805          221 RERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMA--ASQGHESLAGTIIAHYPECYDLVDNGGWN  298 (525)
Q Consensus       221 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  298 (525)
                      +.+|..|+||||+|+..|+.+++++|+++|++.....+. .|.||||+|  +..|+.+++++|++.+++ ++..|..|.|
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~-~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~  158 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS-DGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVY  158 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSS-TTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEE
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCC-CCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchH
Confidence            566666777777777777777777777766665332222 577777777  777777777777777776 5667777778


Q ss_pred             hhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH
Q 009805          299 VLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC  347 (525)
Q Consensus       299 ~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~  347 (525)
                      ++|.++.....   +.+++.+ ...+++.+|..|+||||+|+..|...+
T Consensus       159 ~l~~~~~~~~~---~~ll~~g-a~~~~~~~d~~G~TpL~~A~~~g~~~~  203 (229)
T 2vge_A          159 ALWDYSAEFGD---ELSFREG-ESVTVLRRDGPEETDWWWAALHGQEGY  203 (229)
T ss_dssp             ESSCBCCSSTT---BCCBCTT-CEEEEEESSCTTCSSEEEEEETTEEEE
T ss_pred             HHHHHhhcccc---ccCcccc-ccccccccCCCcccHHHHHHHcCCcce
Confidence            87755544432   3333321 123467788888888888888875544

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=3.6e-31  Score=259.36  Aligned_cols=278  Identities=15%  Similarity=0.075  Sum_probs=193.8

Q ss_pred             HHHHHHH-cCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHH
Q 009805            4 KLYEAAT-NGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPL   82 (525)
Q Consensus         4 ~L~~A~~-~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpL   82 (525)
                      .++.|.. .++.+.+++++++|.+.       .||||+|++.       |+.+++++|++. ..........+..|.|||
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~-------G~~e~v~~Ll~~-ga~~~~~~~~~~~~~tpL  132 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAIT-------GCSSALDTLCLL-LTSDEIVKVIQAENYQAF  132 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHH-------CCHHHHHHHTTC---CCSSCC--CHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHc-------CCHHHHHHHHHc-CCcHHHHHHhccCCCCHH
Confidence            3455555 57888999998877654       4999999999       999999999662 111112224556788999


Q ss_pred             HHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCc
Q 009805           83 HAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPY-SANVNGE  161 (525)
Q Consensus        83 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~g~  161 (525)
                      |+|++.|+.++|++|++.+++...            .+..+.+ .||||+|+..|+.++|++|+++|++++. ..+..|.
T Consensus       133 ~~Aa~~G~~eiv~~Ll~~gad~~~------------~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~  199 (376)
T 2aja_A          133 RLAAENGHLHVLNRLCELAPTEIM------------AMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY  199 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCTTTHH------------HHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCccc------------cccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCC
Confidence            999999999999999999864210            1112222 8999999999999999999999998652 2567799


Q ss_pred             hHHHHHH-HcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCCh
Q 009805          162 TPLYMAA-ARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK  240 (525)
Q Consensus       162 tpL~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~  240 (525)
                      ||||+|+ ..|+.+++++|++.|+       .|.||||+|+..|+.+++++|++.+++. +..+    ++++.|+..|+.
T Consensus       200 TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~-~~~~----~~l~~A~~~g~~  267 (376)
T 2aja_A          200 YAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRL-KEMH----DAFKLSNPDGVF  267 (376)
T ss_dssp             HHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHH-HHHH----TTTTTTSSSSCC
T ss_pred             CHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCccc-cccc----HHHHHHHHCCCh
Confidence            9999999 9999999999999774       3899999999999999999999998873 3322    467788888887


Q ss_pred             hHH------------HHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCc----cccccCCCCchhHHHH
Q 009805          241 DIT------------ALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPEC----YDLVDNGGWNVLHFLM  304 (525)
Q Consensus       241 ~~v------------~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~----~~~~d~~g~t~Lh~A~  304 (525)
                      +++            +.|+..+                    ..+..+.+++|++.....    .......+.||||+|+
T Consensus       268 ~vv~~~~~~~~~~~~~~li~~~--------------------~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~  327 (376)
T 2aja_A          268 DLVTKSECLQGFYMLRNLIRRN--------------------DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL  327 (376)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHC--------------------CGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHH
T ss_pred             hhhcHHhhhhhHHHHHHHHHcc--------------------hhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHH
Confidence            754            3333322                    112355667776543210    0112345678899999


Q ss_pred             hcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH
Q 009805          305 VSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC  347 (525)
Q Consensus       305 ~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~  347 (525)
                      ..|+.++++.|++.+      ..+|..|+|++.+|-..|....
T Consensus       328 ~~g~~e~v~lLl~~~------~v~~~~~~~~~~~~~~~~~~~~  364 (376)
T 2aja_A          328 RLGNQGACALLLSIP------SVLALTKANNYYINETGGRLDL  364 (376)
T ss_dssp             HHTCTTHHHHHTTSH------HHHHSCC---------------
T ss_pred             HcCcHHHHHHHHcCh------HHHHHHHHhccccccccccccH
Confidence            999999999988743      5567788899888888875554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=5.7e-30  Score=234.90  Aligned_cols=191  Identities=14%  Similarity=0.016  Sum_probs=117.8

Q ss_pred             HHHHHhcCCCCCC---CCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCc
Q 009805          177 AEILEKCSSAAHD---GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSS  253 (525)
Q Consensus       177 ~~Ll~~~~~~~~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  253 (525)
                      +.|+++|++++..   +.++.||||.|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            4566666665543   33455667777777777777777777666 4666777777777777777777777777776665


Q ss_pred             chhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCcccccc-CCCCchhHHH--HhcCCHHHHHHHhhCccccccccccCC
Q 009805          254 ALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVD-NGGWNVLHFL--MVSLHESKLKRLLKDPLYKSFIDEKNE  330 (525)
Q Consensus       254 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A--~~~~~~~~~~~ll~~~~~~~~in~~d~  330 (525)
                       +..+. .|.||||+|+..|+.+++++|++++++ ++..+ ..|+||||+|  +..++.+++++|++.   +++++.+|.
T Consensus        81 -n~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~---ga~~~~~~~  154 (229)
T 2vge_A           81 -NSPDS-HGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADV---EQSMGLMNS  154 (229)
T ss_dssp             -TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH---HHHTTTSGG
T ss_pred             -CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHc---CCCcccccC
Confidence             33343 577777777777777777777777776 34443 5777777777  777777777777763   344666777


Q ss_pred             CCChHHHHHHhcCchhHHHHHHHhCCCChHHHhccCCChHHHHhhc
Q 009805          331 MGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISVKHIELYG  376 (525)
Q Consensus       331 ~G~T~Lh~A~~~~~~~~~~ll~~~~~~d~~~~n~~g~t~l~~a~~~  376 (525)
                      .|.||||.++.....  ..++..+..++++.+|..|+||||+|+..
T Consensus       155 ~~~~~l~~~~~~~~~--~~ll~~ga~~~~~~~d~~G~TpL~~A~~~  198 (229)
T 2vge_A          155 GAVYALWDYSAEFGD--ELSFREGESVTVLRRDGPEETDWWWAALH  198 (229)
T ss_dssp             GEEEESSCBCCSSTT--BCCBCTTCEEEEEESSCTTCSSEEEEEET
T ss_pred             CchHHHHHHhhcccc--ccCccccccccccccCCCcccHHHHHHHc
Confidence            777777755444322  23344223333666677777777777644

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.1e-27  Score=205.62  Aligned_cols=150  Identities=25%  Similarity=0.307  Sum_probs=113.6

Q ss_pred             CcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCC
Q 009805           79 DSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANV  158 (525)
Q Consensus        79 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  158 (525)
                      .||||.|++.|+.+++++|++.+.+               ++ .+..|.||||+|+..|+.+++++|+++|++++ ..+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~---------------~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~   65 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAP---------------FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTK   65 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC---------------CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCC---------------CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCC
Confidence            4677888888888888888777764               11 46677788888888888888888887777765 5666


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcC
Q 009805          159 NGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG  238 (525)
Q Consensus       159 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g  238 (525)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+++ ++.+|..|.||||+|+..|
T Consensus        66 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~  144 (153)
T 1awc_B           66 VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcC
Confidence            777888888877888888888877777777777777788877777777777777777776 4667777777777777777


Q ss_pred             ChhHHHHH
Q 009805          239 LKDITALL  246 (525)
Q Consensus       239 ~~~~v~~L  246 (525)
                      +.+++++|
T Consensus       145 ~~~i~~~L  152 (153)
T 1awc_B          145 NEDLAEIL  152 (153)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHh
Confidence            77777765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=1.8e-27  Score=207.77  Aligned_cols=159  Identities=29%  Similarity=0.351  Sum_probs=117.4

Q ss_pred             ccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHH
Q 009805          122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAV  201 (525)
Q Consensus       122 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  201 (525)
                      ....+.++|+.|++.|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            34556778888888888888888888887765 56777888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHH
Q 009805          202 NSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTI  281 (525)
Q Consensus       202 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  281 (525)
                      ..++.+++++|++.+++ .+.+|..|.||||+|+..|+.+++++|+++|.+. ...+. .|.||||+|+..|+.+++++|
T Consensus        89 ~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~l~~A~~~~~~~~~~~L  165 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDK-FGKTAFDISIDNGNEDLAEIL  165 (169)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHhCCHHHHHHH
Confidence            88888888888887776 4666777777777777777777777777776665 33333 566777777777777777776


Q ss_pred             Hhh
Q 009805          282 IAH  284 (525)
Q Consensus       282 l~~  284 (525)
                      ++.
T Consensus       166 ~~~  168 (169)
T 2y1l_E          166 QKL  168 (169)
T ss_dssp             HTC
T ss_pred             HHc
Confidence            654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=6.2e-28  Score=209.90  Aligned_cols=161  Identities=23%  Similarity=0.245  Sum_probs=111.5

Q ss_pred             cCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCC
Q 009805           74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFP  153 (525)
Q Consensus        74 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  153 (525)
                      .|.+|.||||.|++.|+.++++.|++.+...              ++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~--------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   69 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVN--------------CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH   69 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTT--------------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCC--------------ccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC
Confidence            3556677777777777777777777654321              33456667777777777777777777777777765


Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHH
Q 009805          154 YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHH  233 (525)
Q Consensus       154 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~  233 (525)
                       ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+.+ ++.+|..|.||||+
T Consensus        70 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~  147 (165)
T 3twr_A           70 -AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDL  147 (165)
T ss_dssp             -CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGG
T ss_pred             -ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHh
Confidence             5566777777777777777777777777777777777777777777777777777777777766 46677777777777


Q ss_pred             HHHcCChhHHHHHhhcCC
Q 009805          234 SAYLGLKDITALLLEFDG  251 (525)
Q Consensus       234 A~~~g~~~~v~~Ll~~~~  251 (525)
                      |+. |+.+++++|+++|+
T Consensus       148 a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          148 VKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             SCT-TCHHHHHHHHTC--
T ss_pred             Hhc-CChHHHHHHhhccc
Confidence            555 66777777776553

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=2.1e-27  Score=204.48  Aligned_cols=153  Identities=24%  Similarity=0.261  Sum_probs=120.7

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHhhh-cCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 009805           78 GDSPLHAAAKCGRPAVVKVLIEFAK-KQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSA  156 (525)
Q Consensus        78 g~tpLh~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  156 (525)
                      +.||||.|+..|+.++++.|++... +               ++..|..|.||||+ +..|+.+++++|+++|++++ ..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~   64 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVH---------------PDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQ   64 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCC---------------TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcC---------------ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-Cc
Confidence            4578888888888888888887721 2               45677788888888 78888888888888888765 56


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHH
Q 009805          157 NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY  236 (525)
Q Consensus       157 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~  236 (525)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. .+ .+.+|..|.||||+|+.
T Consensus        65 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~  142 (156)
T 1bd8_A           65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQ  142 (156)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHH
Confidence            77788888888888888888888888888888888888888888888888888888877 55 56777778888888888


Q ss_pred             cCChhHHHHHhhc
Q 009805          237 LGLKDITALLLEF  249 (525)
Q Consensus       237 ~g~~~~v~~Ll~~  249 (525)
                      .|+.+++++|+++
T Consensus       143 ~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          143 RGAQDLVDILQGH  155 (156)
T ss_dssp             SCCHHHHHHHHTT
T ss_pred             cCcHHHHHHHHhh
Confidence            8888888887763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=4.3e-27  Score=201.78  Aligned_cols=151  Identities=27%  Similarity=0.340  Sum_probs=117.2

Q ss_pred             CChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCC
Q 009805          126 ENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYA  205 (525)
Q Consensus       126 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  205 (525)
                      ..|+||.|++.|+.+++++|+++|++..  .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            3578888888888888888888888754  57778888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHH
Q 009805          206 ADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTI  281 (525)
Q Consensus       206 ~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  281 (525)
                      .+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|++. ...+. .|.||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSK-FCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCC-CCCCHHHHHHHcCCHHHHHHh
Confidence            8888888888777 5667777777777777777777777777776665 33333 566777777777777766654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1.9e-27  Score=209.78  Aligned_cols=131  Identities=20%  Similarity=0.222  Sum_probs=62.7

Q ss_pred             CccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHH
Q 009805          121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAA  200 (525)
Q Consensus       121 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  200 (525)
                      .+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus        34 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A  112 (179)
T 3f6q_A           34 QGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA  112 (179)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            344444444444444444444444444444443 3344444444444444444444444444444444444444444444


Q ss_pred             HHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCc
Q 009805          201 VNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSS  253 (525)
Q Consensus       201 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  253 (525)
                      +..++.+++++|++.+++ ++.+|..|.|||++|+..++.+++++|+++|.+.
T Consensus       113 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A          113 CFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL  164 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred             HHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence            444444444444444444 3444444444444444444444444444444443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=1.9e-27  Score=206.88  Aligned_cols=161  Identities=23%  Similarity=0.257  Sum_probs=128.2

Q ss_pred             ccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHH
Q 009805          122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAV  201 (525)
Q Consensus       122 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  201 (525)
                      .|.+|.||||.|++.|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            47778899999999999999999998765544567778899999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHH
Q 009805          202 NSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTI  281 (525)
Q Consensus       202 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  281 (525)
                      ..++.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|+++|.+. ...+. .|.||||+|+. |+.+++++|
T Consensus        84 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNR-DGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCTGGGSCT-TCHHHHHHH
T ss_pred             HcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCC-CCCChhHhHhc-CChHHHHHH
Confidence            99999999999998887 5677777888888888877777777777777665 33444 57777777555 667777777


Q ss_pred             HhhCC
Q 009805          282 IAHYP  286 (525)
Q Consensus       282 l~~~~  286 (525)
                      +++++
T Consensus       160 ~~~gA  164 (165)
T 3twr_A          160 RGDAA  164 (165)
T ss_dssp             HTC--
T ss_pred             hhccc
Confidence            76653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=6.4e-27  Score=206.40  Aligned_cols=161  Identities=20%  Similarity=0.202  Sum_probs=133.3

Q ss_pred             CCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHc
Q 009805          124 EEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNS  203 (525)
Q Consensus       124 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~  203 (525)
                      .++.++||.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            35678899999999999999999986554457788899999999999999999999999999998889999999999999


Q ss_pred             CCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHh
Q 009805          204 YAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIA  283 (525)
Q Consensus       204 ~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  283 (525)
                      ++.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|++. ...+. .|.|||++|+..++.+++++|++
T Consensus        83 ~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A           83 GHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNK-YGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCT-TSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhcc-CCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999999998887 5778888888888888888888888888888776 44444 67888888888888888888888


Q ss_pred             hCCC
Q 009805          284 HYPE  287 (525)
Q Consensus       284 ~~~~  287 (525)
                      .+++
T Consensus       160 ~g~~  163 (179)
T 3f6q_A          160 MGQN  163 (179)
T ss_dssp             TTCC
T ss_pred             hhcC
Confidence            8877

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=5.8e-27  Score=201.71  Aligned_cols=154  Identities=21%  Similarity=0.281  Sum_probs=143.7

Q ss_pred             CCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhh
Q 009805           34 KHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAK  113 (525)
Q Consensus        34 g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  113 (525)
                      +.|+||.|+..       |+.+++++|++   ..+.+++..|..|.||||+ +..|+.+++++|++.+.+          
T Consensus         2 ~~~~L~~A~~~-------g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~----------   60 (156)
T 1bd8_A            2 AGDRLSGAAAR-------GDVQEVRRLLH---RELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS----------   60 (156)
T ss_dssp             HHHHHHHHHHH-------TCHHHHHHHHH---TTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC----------
T ss_pred             cchHHHHHHHh-------CCHHHHHHHHH---hhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC----------
Confidence            46899999999       99999999966   3555788899999999999 999999999999999987          


Q ss_pred             hhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCC
Q 009805          114 TAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG  193 (525)
Q Consensus       114 ~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g  193 (525)
                           ++.+|..|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++ ++++.+|..|
T Consensus        61 -----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g  133 (156)
T 1bd8_A           61 -----PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARG  133 (156)
T ss_dssp             -----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTS
T ss_pred             -----CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCC
Confidence                 66789999999999999999999999999999976 6788999999999999999999999999 9999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHh
Q 009805          194 KTALHAAVNSYAADVVEKLLAK  215 (525)
Q Consensus       194 ~t~L~~A~~~~~~~~~~~Ll~~  215 (525)
                      .||||+|+..++.+++++|+++
T Consensus       134 ~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          134 LTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999999874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=2.1e-27  Score=219.72  Aligned_cols=181  Identities=18%  Similarity=0.163  Sum_probs=122.5

Q ss_pred             cCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHH
Q 009805          123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVN  202 (525)
Q Consensus       123 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  202 (525)
                      +..|.||||.|++.|+.++++.|+++|.+++.  +..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            35689999999999999999999999998763  4678999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHH--HhcCCHHHHHH
Q 009805          203 SYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMA--ASQGHESLAGT  280 (525)
Q Consensus       203 ~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~  280 (525)
                      .|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|+++|++. ...+...+.||||+|  +..|+.+++++
T Consensus        80 ~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             HTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHH
Confidence            9999999999999988 6888999999999999999999999999999887 444442455999998  78889999999


Q ss_pred             HHhhCCCccccc---------cCCCCchhHHHHhcCC
Q 009805          281 IIAHYPECYDLV---------DNGGWNVLHFLMVSLH  308 (525)
Q Consensus       281 Ll~~~~~~~~~~---------d~~g~t~Lh~A~~~~~  308 (525)
                      |++.+++ .+..         |..+++++++++..|.
T Consensus       158 Ll~~~a~-~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          158 LYGVQEK-MGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHHH-TTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHhhhc-ccccccceEEEEeccCCCCCCcccccCCC
Confidence            9998876 3333         4445555555555554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=2.2e-27  Score=219.69  Aligned_cols=182  Identities=14%  Similarity=0.122  Sum_probs=130.5

Q ss_pred             CCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCC
Q 009805           75 NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPY  154 (525)
Q Consensus        75 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  154 (525)
                      +..|.||||.|++.|+.+.++.|++.+.+.               +. +..|.||||.|+..|+.+++++|++.|++++ 
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~---------------~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-   64 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV---------------KF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-   64 (239)
T ss_dssp             ---------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC-
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCc---------------cc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence            356999999999999999999999999873               32 4678999999999999999999999999876 


Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCC-cHHHH
Q 009805          155 SANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGW-TPLHH  233 (525)
Q Consensus       155 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~-tpL~~  233 (525)
                      ..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++++++ .+.++..|. ||||+
T Consensus        65 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~  143 (239)
T 1ycs_B           65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADK  143 (239)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHH
Confidence            6788999999999999999999999999999999999999999999999999999999999999 466666665 99999


Q ss_pred             H--HHcCChhHHHHHhhcCCCcchhcc-------cCCCCcHHHHHHhcCC
Q 009805          234 S--AYLGLKDITALLLEFDGSSALILD-------KDRKMTALLMAASQGH  274 (525)
Q Consensus       234 A--~~~g~~~~v~~Ll~~~~~~~~~~~-------~~~g~tpL~~A~~~g~  274 (525)
                      |  +..|+.+++++|++++++......       ...+.++++++...|.
T Consensus       144 a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          144 CEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             CCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            9  788999999999998876532211       2357788888877775

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=1.6e-25  Score=187.85  Aligned_cols=133  Identities=17%  Similarity=0.138  Sum_probs=103.3

Q ss_pred             ccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhc
Q 009805           69 SLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEA  148 (525)
Q Consensus        69 ~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  148 (525)
                      ..++..+..|.||||+|+..|+.+++++|++.+.+               ++.+|..|.||||+|+. |+.+++++|+++
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~   66 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD---------------PNALNRFGRRPIQVMMM-GSAQVAELLLLH   66 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC---------------TTCCCTTCCTTTTTSTT-SCHHHHHHHHHH
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC---------------cCCcCCCCCCHHHHHHc-CCHHHHHHHHHC
Confidence            45566777888888888888888888888887766               55677778888888888 888888888888


Q ss_pred             CCCCCCCCCCC-CchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 009805          149 GPNFPYSANVN-GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH  218 (525)
Q Consensus       149 ~~~~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  218 (525)
                      |++++ ..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++
T Consensus        67 g~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           67 GAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TCCSS-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            87766 45556 78888888888888888888888888877777888888888888888888888777653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=3.4e-25  Score=190.55  Aligned_cols=143  Identities=18%  Similarity=0.141  Sum_probs=96.8

Q ss_pred             ccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCC
Q 009805           73 QTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNF  152 (525)
Q Consensus        73 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  152 (525)
                      ..+..|.||||+|++.|+.++|++|++.+.+               ++.+|..|.||||+|+ .|+.+++++|+++|+++
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~   70 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGAN---------------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP   70 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC---------------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCC---------------CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC
Confidence            4566777888888888888888888877765               5567777888888774 77888888888887776


Q ss_pred             CCCCCCCCch-HHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHH
Q 009805          153 PYSANVNGET-PLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPL  231 (525)
Q Consensus       153 ~~~~~~~g~t-pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL  231 (525)
                      + ..+..|.| |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++++++ ++.++..|.||.
T Consensus        71 ~-~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~~  148 (156)
T 1bi7_B           71 N-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG-TRGSNHARIDAA  148 (156)
T ss_dssp             C-CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             C-CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC-CCccCcCcCccc
Confidence            5 56667777 88888888888888888888888777777788888888888888888888877777 566777777776


Q ss_pred             HH
Q 009805          232 HH  233 (525)
Q Consensus       232 ~~  233 (525)
                      +.
T Consensus       149 ~~  150 (156)
T 1bi7_B          149 EG  150 (156)
T ss_dssp             --
T ss_pred             cc
Confidence            53

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=7.3e-25  Score=183.77  Aligned_cols=131  Identities=21%  Similarity=0.272  Sum_probs=114.1

Q ss_pred             hcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCC-CCcHH
Q 009805          119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPN-GKTAL  197 (525)
Q Consensus       119 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-g~t~L  197 (525)
                      ++..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+. |+.+++++|+++|++++.+|.. |.|||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV   82 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence            56778889999999999999999999999988876 667889999999999 9999999999999998888888 89999


Q ss_pred             HHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCC
Q 009805          198 HAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGS  252 (525)
Q Consensus       198 ~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  252 (525)
                      |+|+..++.+++++|++.+++ ++.+|..|.||||+|+..++.+++++|+++|++
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999988887 577888888888888888888888888887753

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=4.1e-25  Score=195.19  Aligned_cols=154  Identities=15%  Similarity=0.112  Sum_probs=115.5

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCcc-CCCChHhHHHHHcCCH----HHHHHHHhcCCCC
Q 009805           78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTN-EEENTALHEAVQCGNL----DAVKILMEAGPNF  152 (525)
Q Consensus        78 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~  152 (525)
                      +.++|+.|++.|+.+.++.+++.+..                 .++ ..|.||||+|+..|+.    +++++|+++|+++
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~-----------------~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv   68 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE-----------------DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI   68 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS-----------------CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc-----------------cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC
Confidence            35678888888888888887776532                 223 5688888888888864    4788888888887


Q ss_pred             CCCCCCCCchHHHHHHHcCC------HHHHHHHHHhcCCCCCCCCCCC-cHHHHHHHcC-----CHHHHHHHHH-hcCcC
Q 009805          153 PYSANVNGETPLYMAAARGS------KKMVAEILEKCSSAAHDGPNGK-TALHAAVNSY-----AADVVEKLLA-KKRHL  219 (525)
Q Consensus       153 ~~~~~~~g~tpL~~A~~~g~------~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~~-----~~~~~~~Ll~-~~~~~  219 (525)
                      + ..+..|+||||+|+..|+      .+++++|+++|++++.+|..|. ||||+|+..+     +.+++++|++ .+++ 
T Consensus        69 n-~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-  146 (186)
T 3t8k_A           69 K-SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-  146 (186)
T ss_dssp             S-CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-
T ss_pred             C-CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-
Confidence            6 567788888888888776      5678888888888888888888 8888888743     3457777777 7776 


Q ss_pred             cccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 009805          220 TRERDDCGWTPLHHSAYLGLKDITALLLEFD  250 (525)
Q Consensus       220 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  250 (525)
                      ++.+|..|.||||+|+..|+.+++++|.++.
T Consensus       147 ~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          147 LLIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            5777777888888888777777777777643

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.5e-23  Score=173.03  Aligned_cols=126  Identities=36%  Similarity=0.530  Sum_probs=93.4

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 009805           77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSA  156 (525)
Q Consensus        77 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  156 (525)
                      +|.||||.|++.|+.+++++|++.+.+               ++..|..|.||||+|+..|+.+++++|+++|++++ ..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~   64 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD---------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AK   64 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC---------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC---------------CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-cc
Confidence            467777777777777777777777665               45567777777777777777777777777777765 55


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 009805          157 NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH  218 (525)
Q Consensus       157 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  218 (525)
                      +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++
T Consensus        65 ~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            66777777777777777777777777777777777777777777777777777777777653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=2.6e-24  Score=185.01  Aligned_cols=143  Identities=23%  Similarity=0.287  Sum_probs=108.7

Q ss_pred             cCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCc-HHH
Q 009805          120 GLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKT-ALH  198 (525)
Q Consensus       120 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~  198 (525)
                      ...+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH   83 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            3467788999999999999999999999988876 66778999999885 88999999999999999988888988 999


Q ss_pred             HHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHH
Q 009805          199 AAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALL  267 (525)
Q Consensus       199 ~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~  267 (525)
                      +|+..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|++. ...+. .|.||.+
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~t~~~  149 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNH-ARIDAAE  149 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCc-CcCcccc
Confidence            99999999999999998887 5778888888888888888888888888888776 33333 5666655

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=5.1e-25  Score=194.56  Aligned_cols=157  Identities=11%  Similarity=0.001  Sum_probs=138.0

Q ss_pred             CCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccC-CCCCcHHHHHHHcCCh----hHHHHHHHhhhcCChh
Q 009805           33 NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTN-AKGDSPLHAAAKCGRP----AVVKVLIEFAKKQPTA  107 (525)
Q Consensus        33 ~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~-~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~  107 (525)
                      +++++||.|++.       |+.+.++.+++   ...   +.++ ..|.||||+|+..|+.    +++++|++.|++    
T Consensus         5 ~~~~~l~~Aa~~-------g~~~~~~~l~~---~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad----   67 (186)
T 3t8k_A            5 SEYRTVSAAAML-------GTYEDFLELFE---KGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD----   67 (186)
T ss_dssp             HHCSSHHHHHHH-------SCHHHHHHHHH---HSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC----
T ss_pred             ccccHHHHHHHc-------CCHHHHHHHHh---cCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC----
Confidence            357899999999       99999888855   332   3344 7799999999999975    599999999998    


Q ss_pred             HhhhhhhhHHHhcCccCCCChHhHHHHHcCC------HHHHHHHHhcCCCCCCCCCCCCc-hHHHHHHHcC-----CHHH
Q 009805          108 MKCCAKTAWQMLGLTNEEENTALHEAVQCGN------LDAVKILMEAGPNFPYSANVNGE-TPLYMAAARG-----SKKM  175 (525)
Q Consensus       108 ~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~------~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~g-----~~~~  175 (525)
                                 ++.+|..|.||||+|+..|+      .+++++|+++|++++ ..|..|. ||||+|+..+     +.++
T Consensus        68 -----------vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~ttpLh~A~~~~~~~~~~~~i  135 (186)
T 3t8k_A           68 -----------IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT-ALYKPYKIVVFKNIFNYFVDENEMIPL  135 (186)
T ss_dssp             -----------SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS-SCBGGGTBCTTGGGGGCCSCHHHHHHH
T ss_pred             -----------CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC-ccCCCcCchHHHHHHHcCCChhhHHHH
Confidence                       77899999999999999987      689999999999987 7788999 9999999954     4569


Q ss_pred             HHHHHH-hcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 009805          176 VAEILE-KCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH  218 (525)
Q Consensus       176 v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  218 (525)
                      +++|++ +|++++.+|..|.||||+|++.++.+++++|.+....
T Consensus       136 v~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          136 YKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             HHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999 9999999999999999999999999999999987544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=1.1e-23  Score=176.61  Aligned_cols=123  Identities=24%  Similarity=0.324  Sum_probs=65.3

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 009805           77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSA  156 (525)
Q Consensus        77 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  156 (525)
                      .+.||||.|+..|+.+++++|++.+.+               ++.+|..|.||||+|+..|+.+++++|+++|++++ ..
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~   76 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGAD---------------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AV   76 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCC---------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CC
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCC---------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cC
Confidence            345555555555555555555555444               33445555555555555555555555555555543 34


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 009805          157 NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAK  215 (525)
Q Consensus       157 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  215 (525)
                      |..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++.
T Consensus        77 d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            44555555555555555555555555555555555555555555555555555555543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=2.2e-23  Score=174.76  Aligned_cols=127  Identities=28%  Similarity=0.374  Sum_probs=110.5

Q ss_pred             ccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHH
Q 009805          122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAV  201 (525)
Q Consensus       122 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  201 (525)
                      ....+.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            35567899999999999999999999998876 67788999999999999999999999999999988999999999999


Q ss_pred             HcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 009805          202 NSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFD  250 (525)
Q Consensus       202 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  250 (525)
                      ..++.+++++|++.+++ .+.+|..|.||||+|+..|+.+++++|+++|
T Consensus        89 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999998887 5778888999999999999999999888764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=7.8e-25  Score=202.96  Aligned_cols=169  Identities=21%  Similarity=0.224  Sum_probs=125.8

Q ss_pred             CCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhh
Q 009805           33 NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCA  112 (525)
Q Consensus        33 ~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  112 (525)
                      .+.+++.+++..       |+.+.+..+..       .....+..|.||||+|++.|+.++++.|++ +.+         
T Consensus        14 ~~~~~~l~~~~~-------g~~~~~~~~~~-------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---------   69 (244)
T 3ui2_A           14 EGAMEYLIEWKD-------GHSPSWVPSSY-------IAADVVSEYETPWWTAARKADEQALSQLLE-DRD---------   69 (244)
T ss_dssp             TTEEEEEEEESS-------CCCCEEEEGGG-------SCHHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC---------
T ss_pred             CCccHHHHHHHc-------CCCcccccccc-------cccccccCCCCHHHHHHHcCCHHHHHHHHc-CCC---------
Confidence            456667776666       66665433311       112234567888888888888888888888 655         


Q ss_pred             hhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCC
Q 009805          113 KTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPN  192 (525)
Q Consensus       113 ~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  192 (525)
                            ++.+|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|+.+++++|+++|++++.+|..
T Consensus        70 ------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~  143 (244)
T 3ui2_A           70 ------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER  143 (244)
T ss_dssp             ------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence                  56678888888888888888888888888888877544477888888888888888888888888888888888


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhc
Q 009805          193 GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEF  249 (525)
Q Consensus       193 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  249 (525)
                      |.||||+|+..+                  ....+.||||+|+..|+.+++++|+++
T Consensus       144 g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          144 GLTALELAREIL------------------KTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             CCCHHHHHHHHH------------------TTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHH------------------hccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            888888887521                  113466777777777777777777764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=4.4e-23  Score=170.23  Aligned_cols=126  Identities=36%  Similarity=0.505  Sum_probs=104.3

Q ss_pred             CCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcC
Q 009805          125 EENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSY  204 (525)
Q Consensus       125 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  204 (525)
                      +|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence            47888888888888888888888888765 56778888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCC
Q 009805          205 AADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGS  252 (525)
Q Consensus       205 ~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  252 (525)
                      +.+++++|++.+++ .+.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           80 HLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            88888888888877 567777888888888888888888888877753

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=1.2e-23  Score=186.05  Aligned_cols=141  Identities=23%  Similarity=0.271  Sum_probs=120.2

Q ss_pred             CCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCC
Q 009805           75 NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPY  154 (525)
Q Consensus        75 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  154 (525)
                      +..|.||||.|++.|+.++++.|++ +.+               ++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  104 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD---------------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH  104 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC---------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC---------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            4567899999999999999999999 665               667889999999999999999999999999999875


Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHH
Q 009805          155 SANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS  234 (525)
Q Consensus       155 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A  234 (525)
                      ..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|++.++.                  ..+.+||++|
T Consensus       105 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a  166 (183)
T 3deo_A          105 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------TPKGNPMQFG  166 (183)
T ss_dssp             CCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHH
T ss_pred             CCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------cccccHHHHH
Confidence            5558899999999999999999999999999999999999999999864211                  2367888888


Q ss_pred             HHcCChhHHHHHhhc
Q 009805          235 AYLGLKDITALLLEF  249 (525)
Q Consensus       235 ~~~g~~~~v~~Ll~~  249 (525)
                      +..|+.+++++|.++
T Consensus       167 ~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          167 RRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHcCHHHHHHHHHHh
Confidence            888888888888764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=1.5e-24  Score=201.06  Aligned_cols=171  Identities=23%  Similarity=0.212  Sum_probs=142.6

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 009805           77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSA  156 (525)
Q Consensus        77 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  156 (525)
                      .+.+++.+++..|+.+.+..+...+.+                  .+..|.||||+|++.|+.++++.|++ |.+++ ..
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~------------------~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~   73 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIAAD------------------VVSEYETPWWTAARKADEQALSQLLE-DRDVD-AV   73 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSCHH------------------HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CB
T ss_pred             CCccHHHHHHHcCCCcccccccccccc------------------cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-Cc
Confidence            445556666666666555443333222                  34578999999999999999999999 88876 67


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHH
Q 009805          157 NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDG-PNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSA  235 (525)
Q Consensus       157 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~  235 (525)
                      |..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+
T Consensus        74 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A           74 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAR  152 (244)
T ss_dssp             CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHH
Confidence            8899999999999999999999999999999988 8899999999999999999999999998 6889999999999998


Q ss_pred             HcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCC
Q 009805          236 YLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPE  287 (525)
Q Consensus       236 ~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  287 (525)
                      ..+..                   ..+.+|||+|+..|+.+++++|+++..+
T Consensus       153 ~~~~~-------------------~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          153 EILKT-------------------TPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             HHHTT-------------------CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             HHHhc-------------------cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            63321                   2578999999999999999999987543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.7e-23  Score=175.63  Aligned_cols=125  Identities=22%  Similarity=0.253  Sum_probs=68.7

Q ss_pred             cCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCC
Q 009805           74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFP  153 (525)
Q Consensus        74 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  153 (525)
                      +|.+|.||||+|+..|+.+++++|++.+.+               ++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~   70 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSD---------------PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN   70 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Confidence            455555555555555555555555555544               34455555555555555555555555555555544


Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 009805          154 YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLA  214 (525)
Q Consensus       154 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  214 (525)
                       ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|.+
T Consensus        71 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           71 -TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             -CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             -CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence             445555555555555555555555555555555555555555555555555555444443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=1.1e-22  Score=179.73  Aligned_cols=140  Identities=24%  Similarity=0.268  Sum_probs=127.6

Q ss_pred             cCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCC-CCCCcHHHHHH
Q 009805          123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDG-PNGKTALHAAV  201 (525)
Q Consensus       123 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~  201 (525)
                      +..|.||||+|+..|+.++++.|++ |.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            5678999999999999999999999 88876 678899999999999999999999999999999988 88999999999


Q ss_pred             HcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHH
Q 009805          202 NSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTI  281 (525)
Q Consensus       202 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  281 (525)
                      ..|+.+++++|++.+++ ++.+|..|.||||+|+..++.                   ..+.+||++|+..|+.++++.|
T Consensus       119 ~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~-------------------~~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          119 GYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             HTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT-------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC-------------------cccccHHHHHHHcCHHHHHHHH
Confidence            99999999999999988 688999999999999975432                   1467999999999999999999


Q ss_pred             Hhh
Q 009805          282 IAH  284 (525)
Q Consensus       282 l~~  284 (525)
                      .++
T Consensus       179 ~~~  181 (183)
T 3deo_A          179 EGQ  181 (183)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=6.2e-23  Score=172.20  Aligned_cols=129  Identities=24%  Similarity=0.298  Sum_probs=111.9

Q ss_pred             CccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHH
Q 009805          121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAA  200 (525)
Q Consensus       121 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  200 (525)
                      .+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A   83 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDA   83 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHH
Confidence            468889999999999999999999999998876 6788899999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCC
Q 009805          201 VNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDG  251 (525)
Q Consensus       201 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~  251 (525)
                      +..++.+++++|++.+++ .+.+|..|.||||+|+..+..+++++|.+.+.
T Consensus        84 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            999999999999999888 57888999999999988888888877766543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=5.5e-22  Score=189.23  Aligned_cols=146  Identities=18%  Similarity=0.120  Sum_probs=120.8

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHc---CCHHHHHHHHhcCCCCC
Q 009805           77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC---GNLDAVKILMEAGPNFP  153 (525)
Q Consensus        77 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~  153 (525)
                      ...++||.|+..|+.+.++.|++.+.+......         -...+..|.||||+|+..   |+.+++++|+++|++++
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~---------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn  220 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP---------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD  220 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE---------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCC---------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC
Confidence            355789999999999999999999887321000         001588999999999997   89999999999999987


Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHH
Q 009805          154 YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHH  233 (525)
Q Consensus       154 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~  233 (525)
                       ..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+++       .|.||||+
T Consensus       221 -~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~  292 (301)
T 2b0o_E          221 -AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHV  292 (301)
T ss_dssp             -CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-
T ss_pred             -CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHH
Confidence             6788999999999999999999999999999999999999999999999999999999998876       37899999


Q ss_pred             HHHcCC
Q 009805          234 SAYLGL  239 (525)
Q Consensus       234 A~~~g~  239 (525)
                      |+..|+
T Consensus       293 A~~~g~  298 (301)
T 2b0o_E          293 DYSWVI  298 (301)
T ss_dssp             ------
T ss_pred             HHhcCC
Confidence            998876

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=2.4e-22  Score=165.12  Aligned_cols=108  Identities=23%  Similarity=0.241  Sum_probs=50.5

Q ss_pred             CCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcC
Q 009805          125 EENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSY  204 (525)
Q Consensus       125 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  204 (525)
                      .|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            34444444444444444444444444433 33444444444444444444444444444444444444444444444444


Q ss_pred             CHHHHHHHHHhcCcCcccCCCCCCcHHHHH
Q 009805          205 AADVVEKLLAKKRHLTRERDDCGWTPLHHS  234 (525)
Q Consensus       205 ~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A  234 (525)
                      +.+++++|++.+++ ++.+|..|.||||+|
T Consensus        85 ~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           85 HVSCVKLLLSKGAD-KTVKGPDGLTAFEAT  113 (123)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHC
T ss_pred             CHHHHHHHHHcCCC-CCCcCCCCCCHHHHh
Confidence            44444444444444 344444444444444

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=5.2e-22  Score=189.40  Aligned_cols=140  Identities=22%  Similarity=0.167  Sum_probs=100.5

Q ss_pred             CChHhHHHHHcCCHHHHHHHHhcCCCCCCC-----CCCCCchHHHHHHHc---CCHHHHHHHHHhcCCCCCCCCCCCcHH
Q 009805          126 ENTALHEAVQCGNLDAVKILMEAGPNFPYS-----ANVNGETPLYMAAAR---GSKKMVAEILEKCSSAAHDGPNGKTAL  197 (525)
Q Consensus       126 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L  197 (525)
                      +.++|+.|+..|+.+.++.|++.|++++..     .+..|.||||+|+..   |+.+++++|+++|++++.+|..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            346688888888888888888877776642     566778888888876   777888888888888777777788888


Q ss_pred             HHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCC
Q 009805          198 HAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGH  274 (525)
Q Consensus       198 ~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~  274 (525)
                      |+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++++++        .|.||||+|+..|+
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC-------
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhHHHHhcCC
Confidence            888888888888888887777 567777777777777777777777777776543        35677777776665

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=6.7e-22  Score=162.49  Aligned_cols=119  Identities=21%  Similarity=0.232  Sum_probs=105.9

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHH
Q 009805          157 NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAY  236 (525)
Q Consensus       157 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~  236 (525)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+++ ++.+|..|+||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999988 68899999999999999


Q ss_pred             cCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHH
Q 009805          237 LGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLA  278 (525)
Q Consensus       237 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  278 (525)
                      .|+.+++++|+++|++. ...+. .|.||||+|+..+..+++
T Consensus        83 ~~~~~~v~~Ll~~ga~~-~~~~~-~g~t~l~~A~~~~~~~ll  122 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADK-TVKGP-DGLTAFEATDNQAIKALL  122 (123)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHhCCHHHHHHh
Confidence            99999999999999887 45555 799999999655544443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=1.9e-22  Score=184.26  Aligned_cols=129  Identities=25%  Similarity=0.258  Sum_probs=89.9

Q ss_pred             cCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhc-CCCC
Q 009805           74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEA-GPNF  152 (525)
Q Consensus        74 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~  152 (525)
                      .+..|.||||+|+..|+.+++++|++.+.+               ++.+|..|.||||+|+..|+.+++++|++. |.++
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~  133 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVG---------------VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL  133 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCC---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCC---------------ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc
Confidence            455677777777777777777777777665               555677777777777777777777777777 6665


Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 009805          153 PYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH  218 (525)
Q Consensus       153 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  218 (525)
                      + ..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.++++.|++.+..
T Consensus       134 ~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          134 N-QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV  198 (222)
T ss_dssp             C-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred             c-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence            5 5667777777777777777777777777777777777777777777777777777777776655

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=1.4e-21  Score=178.51  Aligned_cols=133  Identities=25%  Similarity=0.252  Sum_probs=116.3

Q ss_pred             hcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHh-cCCCCCCCCCCCcHH
Q 009805          119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK-CSSAAHDGPNGKTAL  197 (525)
Q Consensus       119 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L  197 (525)
                      ++..+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++ |++++.+|..|.|||
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL  144 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL  144 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHH
Confidence            34457789999999999999999999999999976 6788999999999999999999999999 899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCc
Q 009805          198 HAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSS  253 (525)
Q Consensus       198 ~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  253 (525)
                      |+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..++.++++.|++.+...
T Consensus       145 ~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            999999999999999999998 6889999999999999999999999999888765

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=3.1e-20  Score=175.01  Aligned_cols=126  Identities=21%  Similarity=0.221  Sum_probs=105.8

Q ss_pred             ChHhHHHHHcCCHHHHHHHHhcCCCCCC-----CCCCCCchHHHHHHHc---CCHHHHHHHHHhcCCCCCCCCCCCcHHH
Q 009805          127 NTALHEAVQCGNLDAVKILMEAGPNFPY-----SANVNGETPLYMAAAR---GSKKMVAEILEKCSSAAHDGPNGKTALH  198 (525)
Q Consensus       127 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L~  198 (525)
                      .++|+.|+..|+.+.++.+++.|+++..     ..+..|.||||+|+..   |+.+++++|+++|++++.+|..|.||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            4688889999999999888888887542     2367788999999888   8888999999988888888888889999


Q ss_pred             HHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCc
Q 009805          199 AAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSS  253 (525)
Q Consensus       199 ~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  253 (525)
                      +|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++++..
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99888888888888888887 6778888888888888888888888888877643

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=1.9e-20  Score=176.43  Aligned_cols=193  Identities=17%  Similarity=0.107  Sum_probs=133.8

Q ss_pred             cCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCC
Q 009805           74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFP  153 (525)
Q Consensus        74 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  153 (525)
                      .|..+.++|+.+...|+....+++.........              .+-..+....    .....-..+++........
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~--------------~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~  123 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDP--------------VKPNPGSDMI----ARKDYITAKYMERRYARKK  123 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSC--------------CSCCTTCCHH----HHHHHHHHHHTTCTTSCCC
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhc--------------CCCCCCCCHH----HHHHHHHHHHHHhhccccc
Confidence            567788899999999988777765433221100              0000111111    1111112233333222211


Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCC------CCCCCCCCcHHHHHHHc---CCHHHHHHHHHhcCcCcccCC
Q 009805          154 YSANVNGETPLYMAAARGSKKMVAEILEKCSSA------AHDGPNGKTALHAAVNS---YAADVVEKLLAKKRHLTRERD  224 (525)
Q Consensus       154 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~------~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~d  224 (525)
                      ........++|+.|+..|+.+.++.+++.|+++      +..+..|.||||+|+..   ++.+++++|++.+++ ++.+|
T Consensus       124 ~~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d  202 (278)
T 1dcq_A          124 HADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQT  202 (278)
T ss_dssp             SSSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCC
T ss_pred             ccccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccC
Confidence            112223457899999999999999999999874      34577889999999988   888999999999888 67888


Q ss_pred             CCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCC
Q 009805          225 DCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPE  287 (525)
Q Consensus       225 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  287 (525)
                      ..|+||||+|+..|+.+++++|+++|++. +..+. .|.||||+|+..|+.+++++|++++++
T Consensus       203 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          203 GKGSTALHYCCLTDNAECLKLLLRGKASI-EIANE-SGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            88999999999999999999999888876 44555 688888888888888888888888764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=4.5e-20  Score=179.92  Aligned_cols=125  Identities=21%  Similarity=0.210  Sum_probs=73.1

Q ss_pred             CCCChHhHHHHHc-CCHHHHHHHHhcCCCCCCCCC--CCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHH
Q 009805          124 EEENTALHEAVQC-GNLDAVKILMEAGPNFPYSAN--VNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAA  200 (525)
Q Consensus       124 ~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  200 (525)
                      ..+.|+||.|+.. |+.++++.|+++|++++. .+  ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~-~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNW-VNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCc-cccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            3445566666655 666666666666655542 23  4555666666666666666666666666665566666666666


Q ss_pred             HHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcC
Q 009805          201 VNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFD  250 (525)
Q Consensus       201 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  250 (525)
                      +..++.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.+
T Consensus       276 ~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          276 TILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            666666666666666555 3555555666666666666666666665543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=6.7e-20  Score=142.25  Aligned_cols=90  Identities=37%  Similarity=0.525  Sum_probs=42.5

Q ss_pred             CChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCC
Q 009805          126 ENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYA  205 (525)
Q Consensus       126 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  205 (525)
                      |+||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            3444444444444444444444444443 334444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHhc
Q 009805          206 ADVVEKLLAKK  216 (525)
Q Consensus       206 ~~~~~~Ll~~~  216 (525)
                      .+++++|++.|
T Consensus        81 ~~~~~~Ll~~g   91 (93)
T 1n0q_A           81 LEVVKLLLEAG   91 (93)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcC
Confidence            44444444444

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.4e-19  Score=140.45  Aligned_cols=93  Identities=35%  Similarity=0.472  Sum_probs=88.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcC
Q 009805          159 NGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG  238 (525)
Q Consensus       159 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g  238 (525)
                      +|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+++ ++.+|..|+||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcC
Confidence            489999999999999999999999999999999999999999999999999999999998 6889999999999999999


Q ss_pred             ChhHHHHHhhcCCC
Q 009805          239 LKDITALLLEFDGS  252 (525)
Q Consensus       239 ~~~~v~~Ll~~~~~  252 (525)
                      +.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999864

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=1.7e-19  Score=175.83  Aligned_cols=149  Identities=17%  Similarity=0.166  Sum_probs=117.7

Q ss_pred             CCCCCchHHHHHHHc-CCHHHHHHHHHhcCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHH
Q 009805          156 ANVNGETPLYMAAAR-GSKKMVAEILEKCSSAAHDG--PNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLH  232 (525)
Q Consensus       156 ~~~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~  232 (525)
                      .+..+.|+||.|+.. |+.+++++|+++|++++..+  ..|.||||+|+..++.+++++|++.+++ ++.+|..|+||||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh  273 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLH  273 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHH
Confidence            345678999999999 99999999999999999988  8999999999999999999999999998 6889999999999


Q ss_pred             HHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCc--cccccCCCCchhHHHHhcC
Q 009805          233 HSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPEC--YDLVDNGGWNVLHFLMVSL  307 (525)
Q Consensus       233 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~~~  307 (525)
                      +|+..|+.+++++|+++|++. ...+. .|.||||+|+..|+.+++++|++.+...  ....+..+.|+++++....
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~-~~~d~-~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADL-GARDS-EGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCCC-CCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            999999999999999999987 55555 7999999999999999999999876432  2245667889998877654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=7.8e-20  Score=148.09  Aligned_cols=107  Identities=26%  Similarity=0.398  Sum_probs=54.9

Q ss_pred             cCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCC
Q 009805           74 TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFP  153 (525)
Q Consensus        74 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  153 (525)
                      +|.+|.||||+|+..|+.+++++|++.+.+               ++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~   69 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD---------------VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN   69 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCC---------------SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc
Confidence            444555555555555555555555555444               33445555555555555555555555555555543


Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcH
Q 009805          154 YSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTA  196 (525)
Q Consensus       154 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~  196 (525)
                       ..|..|.||||+|+..|+.+++++|+++|++++.++..|.+|
T Consensus        70 -~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           70 -ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             -CCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             -ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence             344455555555555555555555555555555544444443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=3.4e-19  Score=144.28  Aligned_cols=108  Identities=27%  Similarity=0.357  Sum_probs=92.0

Q ss_pred             CccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHH
Q 009805          121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAA  200 (525)
Q Consensus       121 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  200 (525)
                      .+|.+|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            468889999999999999999999999988876 6778889999999999999999999999988888888899999999


Q ss_pred             HHcCCHHHHHHHHHhcCcCcccCCCCCCcH
Q 009805          201 VNSYAADVVEKLLAKKRHLTRERDDCGWTP  230 (525)
Q Consensus       201 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp  230 (525)
                      +..++.+++++|++++++ ++.++..|.+|
T Consensus        83 ~~~~~~~~~~~Ll~~ga~-~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGAD-VNARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSS-HHHHSCCCC--
T ss_pred             HHCCCHHHHHHHHHcCCC-CCcCCcccccc
Confidence            998899999999988888 57777777776

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=9.9e-17  Score=128.46  Aligned_cols=93  Identities=30%  Similarity=0.414  Sum_probs=77.2

Q ss_pred             hcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHH
Q 009805          119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALH  198 (525)
Q Consensus       119 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~  198 (525)
                      ....|.+|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence            44567888899999999999999999999888876 56788899999999999999999999998888888888889999


Q ss_pred             HHHHcCCHHHHHHH
Q 009805          199 AAVNSYAADVVEKL  212 (525)
Q Consensus       199 ~A~~~~~~~~~~~L  212 (525)
                      +|+..++.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99888888888876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=7.1e-17  Score=129.30  Aligned_cols=94  Identities=22%  Similarity=0.377  Sum_probs=83.5

Q ss_pred             cccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcC
Q 009805           70 LLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAG  149 (525)
Q Consensus        70 ~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  149 (525)
                      .....|.+|.||||+|+..|+.+++++|++.+.+               ++.+|..|.||||+|+..|+.+++++|+++|
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g   80 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD---------------VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG   80 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCC---------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCC---------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            3456788999999999999999999999999887               6778999999999999999999999999999


Q ss_pred             CCCCCCCCCCCchHHHHHHHcCCHHHHHHH
Q 009805          150 PNFPYSANVNGETPLYMAAARGSKKMVAEI  179 (525)
Q Consensus       150 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  179 (525)
                      ++++ ..|..|.||||+|+..|+.+++++|
T Consensus        81 a~~~-~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           81 ADVX-AQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCTT-CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCcc-ccccCCCcHHHHHHHcCCHHHHHHh
Confidence            9976 6788999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	525
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-19
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-20
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	6e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	5e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 2e-24
 Identities = 75/298 (25%), Positives = 125/298 (41%), Gaps = 25/298 (8%)

Query: 75  NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV 134
             KG +PLH AAK G+  V ++L+E                        +   T LH AV
Sbjct: 129 TKKGFTPLHVAAKYGKVRVAELLLE---------------RDAHPNAAGKNGLTPLHVAV 173

Query: 135 QCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGK 194
              NLD VK+L+  G + P+S   NG TPL++AA +   ++   +L+   SA  +   G 
Sbjct: 174 HHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV 232

Query: 195 TALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSA 254
           T LH A     A++V  LL+K+ +     +  G TPLH  A  G   +  +L++      
Sbjct: 233 TPLHLAAQEGHAEMVALLLSKQANGN-LGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-- 289

Query: 255 LILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKR 314
           +        T L +A+  G+  L    +  +    +     G++ LH      H   +  
Sbjct: 290 VDATTRMGYTPLHVASHYGNIKLV-KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL 348

Query: 315 LLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGK--GDTQAVNKKKISVK 370
           LLK     +  +E +  G TPL I   L   +  ++++ +          +K ++S  
Sbjct: 349 LLK---NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 403

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (247), Expect = 3e-23
 Identities = 61/260 (23%), Positives = 99/260 (38%), Gaps = 23/260 (8%)

Query: 81  PLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLD 140
           PLH A+  G   +VK L++                     ++N +  T LH A + G+ +
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGAS---------------PNVSNVKVETPLHMAARAGHTE 47

Query: 141 AVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAA 200
             K L++       +   + +TPL+ AA  G   MV  +LE  ++       G T LH A
Sbjct: 48  VAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA 106

Query: 201 VNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKD 260
                 + V  LL K+          G+TPLH +A  G   +  LLLE   +      K+
Sbjct: 107 AREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKN 164

Query: 261 RKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPL 320
                L +A    +  +   ++             G+  LH           + LL+   
Sbjct: 165 GLT-PLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQ--- 219

Query: 321 YKSFIDEKNEMGNTPLHILA 340
           Y    + ++  G TPLH+ A
Sbjct: 220 YGGSANAESVQGVTPLHLAA 239

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.6 bits (239), Expect = 3e-22
 Identities = 74/297 (24%), Positives = 121/297 (40%), Gaps = 54/297 (18%)

Query: 74  TNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEA 133
           +N K ++PLH AA+ G   V K L++   K               +    +++ T LH A
Sbjct: 29  SNVKVETPLHMAARAGHTEVAKYLLQNKAK---------------VNAKAKDDQTPLHCA 73

Query: 134 VQCGNLDAVKILMEAGPN--------------------------------FPYSANVNGE 161
            + G+ + VK+L+E   N                                        G 
Sbjct: 74  ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF 133

Query: 162 TPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTR 221
           TPL++AA  G  ++   +LE+ +     G NG T LH AV+    D+V KLL  +     
Sbjct: 134 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV-KLLLPRGGSPH 192

Query: 222 ERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTI 281
                G+TPLH +A     ++   LL++ GS+    +  + +T L +AA +GH  +   +
Sbjct: 193 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA--NAESVQGVTPLHLAAQEGHAEMV-AL 249

Query: 282 IAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           +       +L +  G   LH +    H      L+K   +   +D    MG TPLH+
Sbjct: 250 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK---HGVMVDATTRMGYTPLHV 303

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 4e-19
 Identities = 52/258 (20%), Positives = 93/258 (36%), Gaps = 28/258 (10%)

Query: 5   LYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQIL 64
           L+ A  +  ++    +            N +T LH+   +  ++             + L
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA-----------RSL 217

Query: 65  EICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNE 124
                     + +G +PLH AA+ G   +V                   +      L N+
Sbjct: 218 LQYGGSANAESVQGVTPLHLAAQEGHAEMVA---------------LLLSKQANGNLGNK 262

Query: 125 EENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCS 184
              T LH   Q G++    +L++ G     +    G TPL++A+  G+ K+V  +L+  +
Sbjct: 263 SGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 321

Query: 185 SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITA 244
                   G + LH A      D+V  LL        E    G TPL  +  LG   +T 
Sbjct: 322 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSSDGTTPLAIAKRLGYISVTD 380

Query: 245 LLLEFDGSSALILDKDRK 262
           +L      ++ +L  D+ 
Sbjct: 381 VLKVVTDETSFVLVSDKH 398

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 263 MTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYK 322
           +T L +A+  GH  +   ++       ++ +      LH    + H    K LL+    K
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQ---NK 56

Query: 323 SFIDEKNEMGNTPLHILA 340
           + ++ K +   TPLH  A
Sbjct: 57  AKVNAKAKDDQTPLHCAA 74

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (219), Expect = 3e-20
 Identities = 49/261 (18%), Positives = 88/261 (33%), Gaps = 48/261 (18%)

Query: 125 EENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCS 184
           E+N  L +AVQ  ++D V+ L+E G N  +     G TPL+ A     + +V  +L   +
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 185 S--------------AAHDG-------------------PNGKTALHAAVNSYAADVVEK 211
                          AA  G                     G TA   A        ++ 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 212 LLAK---------KRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK 262
           L  +          +         G T L  +A  G  ++  +LL+  G+     D   +
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 263 MTALLMAASQG---HESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDP 319
              +    S      E++   ++ H  +  ++    G   L   +   H   ++RLL+  
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQ- 241

Query: 320 LYKSFIDEKNEMGNTPLHILA 340
                I++ +  G T L +  
Sbjct: 242 -EHIEINDTDSDGKTALLLAV 261

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 3e-19
 Identities = 56/266 (21%), Positives = 96/266 (36%), Gaps = 34/266 (12%)

Query: 60  VEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEF------------------A 101
           V+Q+LE   ++  Q    G +PLH A +  R  +V++L+                    A
Sbjct: 21  VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAA 80

Query: 102 KKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNF--------- 152
                 +     +    +   +    TA  EA   G + A+K L + G N          
Sbjct: 81  IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED 140

Query: 153 PYSANVNGETPLYMAAARGSKKMVAEILEKC----SSAAHDGPNGKTALHAAVNSYAADV 208
                  G T L  AA +G  +++  +L++     ++  + G N       + +    + 
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 209 VEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLM 268
           +  LL         R + G TPL  +       +   LLE +       D D K TALL+
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK-TALLL 259

Query: 269 AASQGHESLAGTIIAH--YPECYDLV 292
           A     + +A  +       +C DLV
Sbjct: 260 AVELKLKKIAELLCKRGASTDCGDLV 285

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 6e-20
 Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 11/231 (4%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA 186
           N  +      G L+ +K  + A  +     + +  T L+ A + G  ++V  +L+     
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 187 AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
                 G + LH A ++   ++V+ LL K   +    +  G TPLH++A     +I  +L
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVML 122

Query: 247 LEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVS 306
           LE     A    KD      +  A+         I+ +Y    ++ D  G   LH     
Sbjct: 123 LE---GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE 179

Query: 307 LHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKG 357
               + K L+      + I  +N+   TPL +    +      I++++ +G
Sbjct: 180 ERVEEAKLLVS---QGASIYIENKEEKTPLQV----AKGGLGLILKRMVEG 223

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 5e-16
 Identities = 41/207 (19%), Positives = 77/207 (37%), Gaps = 21/207 (10%)

Query: 60  VEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQ-- 117
           +++ +    SL  +T+    + LH A   G   +V+ L++                    
Sbjct: 19  LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 78

Query: 118 ----------------MLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGE 161
                            +   N+   T LH A      +   +L+E G N P + +    
Sbjct: 79  SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEA 137

Query: 162 TPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTR 221
           T ++ AAA+G+ KM+  +L   +S       G T LH A +    +  + L+++   +  
Sbjct: 138 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY- 196

Query: 222 ERDDCGWTPLHHSAYLGLKDITALLLE 248
             +    TPL  +   GL  I   ++E
Sbjct: 197 IENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 7e-10
 Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 31/195 (15%)

Query: 5   LYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQIL 64
           L+ A + G  E    + +  +      +   + LH+  +                + + L
Sbjct: 41  LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG-----------RDEIVKAL 89

Query: 65  EICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIE------------------FAKKQPT 106
               + +   N  G +PLH AA   R  +  +L+E                   A K   
Sbjct: 90  LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 149

Query: 107 AMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYM 166
            M            + + E NT LH A     ++  K+L+  G +  Y  N   +TPL  
Sbjct: 150 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPL-Q 207

Query: 167 AAARGSKKMVAEILE 181
            A  G   ++  ++E
Sbjct: 208 VAKGGLGLILKRMVE 222

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 86.1 bits (212), Expect = 6e-19
 Identities = 45/346 (13%), Positives = 89/346 (25%), Gaps = 42/346 (12%)

Query: 1   MEPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKN--KEGESVSTK 58
            +P+L           F      N  S++T + K  +       ++++   +        
Sbjct: 12  NDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAH 71

Query: 59  FVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQM 118
           +     ++      +   K +     AA  G  + +  L                   ++
Sbjct: 72  YNRNAKQLWSDA-HKKGIKSEVICFVAAITGCSSALDTLCLLLTS------------DEI 118

Query: 119 LGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYS-ANVNGETPLYMAAARGSKKMVA 177
           + +   E   A   A + G+L  +  L E  P    +           +AA  G   ++ 
Sbjct: 119 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 178

Query: 178 EILEKCSSAAH---DGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHS 234
            + E   + A       N      AAV     +V+  LL        +          H 
Sbjct: 179 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL--------DCPVMLAYAEIHE 230

Query: 235 AYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDN 294
              G K +   +         +        A  ++   G   L                 
Sbjct: 231 FEYGEKYVNPFIARHVNRLKEM------HDAFKLSNPDGVFDLVTKSECLQ-------GF 277

Query: 295 GGWNVLHFLMVSLHESKLKRLLKDPLYKSF--IDEKNEMGNTPLHI 338
                L      +    ++ LL  P  K+           N  L +
Sbjct: 278 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 323

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 69.9 bits (170), Expect = 1e-13
 Identities = 38/226 (16%), Positives = 62/226 (27%), Gaps = 33/226 (14%)

Query: 73  QTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHE 132
              A+       AA+ G   V+  L E                 +++ +   E   A   
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCE-------------LAPTEIMAMIQAENYHAFRL 167

Query: 133 AVQCGNLDAVKILMEAGPNF--PYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDG 190
           A + G+L  +  L E  P          N     + A  RG   ++  +L+     A+  
Sbjct: 168 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 227

Query: 191 PNGKTALHAAVNSYAADVVEKLLAKKRHL----------TRERDDC-----GWTPLHHSA 235
            +        VN + A  V +L                    + +C         L    
Sbjct: 228 IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN 287

Query: 236 YLGLKDITALLLEFDGSSALILDKDRKM---TALLMAASQGHESLA 278
              L D    LL   G  AL             L +A   G++   
Sbjct: 288 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC 333

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.9 bits (131), Expect = 8e-09
 Identities = 29/270 (10%), Positives = 74/270 (27%), Gaps = 27/270 (10%)

Query: 121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEIL 180
           + N E +  L         +  +  + A      + +      +++   +  ++ V ++L
Sbjct: 7   IENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQ-VRQLL 65

Query: 181 ------------EKCSSAAHDGPNGKTALHAAVNSYAADVVE--KLLAKKRHLTRERDDC 226
                       +  S A   G   +     A  +  +  ++   LL     + +     
Sbjct: 66  CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE 125

Query: 227 GWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYP 286
            +     +A  G   +   L E   +  + + +     A  +AA  GH  +   +    P
Sbjct: 126 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 287 ECYDLV--DNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSA 344
                +      +      +   H + +  LL          +   M             
Sbjct: 186 TEATAMIQAENYYAFRWAAVGRGHHNVINFLL----------DCPVMLAYAEIHEFEYGE 235

Query: 345 RTCNEIVRQIGKGDTQAVNKKKISVKHIEL 374
           +  N  + +      +  +  K+S      
Sbjct: 236 KYVNPFIARHVNRLKEMHDAFKLSNPDGVF 265

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 43.3 bits (101), Expect = 4e-05
 Identities = 10/75 (13%), Positives = 19/75 (25%), Gaps = 10/75 (13%)

Query: 73  QTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHE 132
                    L           ++ L+     +  A                 + N  L  
Sbjct: 274 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT----------ATIPGDANELLRL 323

Query: 133 AVQCGNLDAVKILME 147
           A++ GN  A  +L+ 
Sbjct: 324 ALRLGNQGACALLLS 338

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.4 bits (189), Expect = 1e-16
 Identities = 50/233 (21%), Positives = 78/233 (33%), Gaps = 16/233 (6%)

Query: 119 LGLTNEEENTALHEAVQCGNLDAVKILMEAG--PNFPYSANVNGETPLYMAAARGSKKMV 176
            G   E+ +TALH AV   +   +  L+       +    N  G+T L++AA  G    V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 177 AEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLL---------AKKRHLTRERDDCG 227
            ++    +        G TALH A    A      LL         A   +LT+ +D   
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 228 WTPLHHSAYLGLKDITALLLEFDGSSALILDKDRK--MTALLMAASQGHESLAGTIIAHY 285
            T    +A     +        D    L L+ +     T L +A       +   +    
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 286 PECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
            +        G   LH  + +   S L+ LLK     +    +   G TPL  
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLK---AGADPTARMYGGRTPLGS 231

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.5 bits (145), Expect = 7e-11
 Identities = 55/268 (20%), Positives = 85/268 (31%), Gaps = 42/268 (15%)

Query: 32  NNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEIC--PSLLIQTNAKGDSPLHAAAKCG 89
            +  T LH+ +  Q             F++ +L        L   N  G + LH AA  G
Sbjct: 7   EDGDTALHLAVIHQHEP----------FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG 56

Query: 90  RPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAG 149
                            +       A   + +     +TALH A +        +L++  
Sbjct: 57  EA---------------STVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR 101

Query: 150 PNFPY---------SANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD----GPNGKTA 196
           P+ P          S +   +T    AA         E   +             +G T 
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161

Query: 197 LHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALI 256
           LH AV    A++V  L      L +    CG TPLH +       +  LLL+  G+    
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTA 220

Query: 257 LDKDRKMTALLMAASQGHESLAGTIIAH 284
                  T L  A  + +  LA  + AH
Sbjct: 221 RMYG-GRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 108 MKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMA 167
           ++        +         T LH AV+      +++L++AG + P +    G TPL  A
Sbjct: 174 VRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSA 232

Query: 168 AARGSKKMVAEILEKCSSAAHDG 190
             R +  +   +    +    DG
Sbjct: 233 LLRPNPILARLLRAHGAPEPEDG 255

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.1 bits (180), Expect = 1e-15
 Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 8/216 (3%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEK---- 182
           N  LH+A        V+ L+ + P+     + +G  PL+ + +  + ++ + +L K    
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 183 CSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDI 242
                 D         A        V        +    +  + G T LH +      ++
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 243 TALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHF 302
           +  L+E   S  +    ++    L  AAS G   L   +        +  D  GW  L  
Sbjct: 121 SQFLIENGASVRIKDKFNQ--IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 178

Query: 303 LMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
            +   H      L++   Y +  D  +  G     +
Sbjct: 179 ALAEGHGDAAVLLVEK--YGAEYDLVDNKGAKAEDV 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 37/231 (16%), Positives = 69/231 (29%), Gaps = 52/231 (22%)

Query: 79  DSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGN 138
           + PLH A        V+ L+                        +++    LH +V    
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQ--------------KDQDGRIPLHWSVSFQA 46

Query: 139 LDAVKILMEAG-------------------------------------PNFPYSANVNGE 161
            +    L+                                                  G 
Sbjct: 47  HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 106

Query: 162 TPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTR 221
           T L++A  +   ++   ++E  +S        +  LH A +  +  ++E L    +    
Sbjct: 107 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 166

Query: 222 ERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQ 272
            +D  GWTPL H+   G  D   LL+E  G+   ++D      A  +A ++
Sbjct: 167 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA-KAEDVALNE 216

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 1/183 (0%)

Query: 195 TALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSA 254
             LH A        V++LL  K  L  ++D  G  PLH S      +IT+ LL     + 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENV 60

Query: 255 LILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKR 314
            + D            +    +L      +       ++      +  L +++ +   + 
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 315 LLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKKKISVKHIEL 374
                   + +  K++    PLH  A++ +    E++  +GK      +K+  +     L
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 375 YGC 377
              
Sbjct: 181 AEG 183

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 14/114 (12%)

Query: 62  QILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGL 121
           Q L    + +   +     PLH                 +      ++         +  
Sbjct: 122 QFLIENGASVRIKDKFNQIPLH--------------RAASVGSLKLIELLCGLGKSAVNW 167

Query: 122 TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKM 175
            +++  T L  A+  G+ DA  +L+E         +  G     +A     KK 
Sbjct: 168 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF 221

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.7 bits (169), Expect = 9e-14
 Identities = 33/264 (12%), Positives = 79/264 (29%), Gaps = 30/264 (11%)

Query: 22  KDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSP 81
           ++   S+   ++       +  +Q       +S+  +  +       +L I  +  G++P
Sbjct: 52  QEMPTSLNNDSSNRNSEGGSSNQQQQHVSF-DSLLQEVNDAFPNTQLNLNIPVDEHGNTP 110

Query: 82  LHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDA 141
           LH         +VK L++             ++                 ++V   +   
Sbjct: 111 LHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVK-----------AVKSVNNYDSGT 158

Query: 142 VKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA-------------AH 188
            + L++         +    T L+           +   +                    
Sbjct: 159 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS 218

Query: 189 DGPNGKTALHAAVNSYAADVVEKLLAKKR--HLTRERDDCGWTPLHHSAYLGLKDITALL 246
                ++  +         ++E L  K    ++   +D  G T L+ +A LG   I   L
Sbjct: 219 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 278

Query: 247 LEFDGSSALILDKDRKMTALLMAA 270
           L++ G+   I +K   +  +   A
Sbjct: 279 LDY-GADPFIANKS-GLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.2 bits (160), Expect = 2e-12
 Identities = 38/223 (17%), Positives = 70/223 (31%), Gaps = 26/223 (11%)

Query: 121 LTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEIL 180
                     H +      +          N     + +G TPL+   +  + ++V  ++
Sbjct: 68  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 127

Query: 181 EKCSSAAHDGPNGKTALHAA---VNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYL 237
           +  S+  +    G++ L  A   VN+Y +   E LL          D    T LHH    
Sbjct: 128 KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIIT 187

Query: 238 GLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGW 297
                                    MT    AA    + L G I+           N   
Sbjct: 188 S-----------------------GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 224

Query: 298 NVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILA 340
           +  +       +S L+ L    +  + ++ ++  G+T L+I A
Sbjct: 225 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 267

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 28/223 (12%), Positives = 68/223 (30%), Gaps = 17/223 (7%)

Query: 157 NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDG-PNGKTALHAAVNSYAADVVEKLLAK 215
            +  E  L        ++M   +    S+   +G  + +   H + +S   +V +     
Sbjct: 36  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 95

Query: 216 KRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHE 275
           + +L    D+ G TPLH    +   ++   L++     +  L  D    + L+ A +   
Sbjct: 96  QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG---SNRLYGDNMGESCLVKAVKSVN 152

Query: 276 SLAGTIIAHYPE----CYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPL---------YK 322
           +          +    C  L D+    +LH ++++   +      K  L          +
Sbjct: 153 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 212

Query: 323 SFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGDTQAVNKK 365
           +   +                 +        +       +N +
Sbjct: 213 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ 255

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 68.3 bits (165), Expect = 1e-13
 Identities = 37/210 (17%), Positives = 70/210 (33%), Gaps = 21/210 (10%)

Query: 56  STKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTA 115
           + + +  +L     L    +  G++ LH AA+  R    K L++      +         
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 60

Query: 116 -------------------WQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSA 156
                                 L     +  T L  A +      V+ L+ A  +   +A
Sbjct: 61  HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAA 119

Query: 157 NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKK 216
           + +G+T L+ AAA  + + V  +L   ++        +T L  A    + +  + LL   
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 217 RHLTRERDDCGWTPLHHSAYLGLKDITALL 246
            +     D     P   ++     DI  LL
Sbjct: 180 ANRE-ITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 33/197 (16%), Positives = 58/197 (29%), Gaps = 6/197 (3%)

Query: 142 VKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAV 201
           +  L+  G     + +  GET L++AA         + L    + A+   N       A 
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAA-KRLLDAGADANSQDNTGRTPLHAA 63

Query: 202 NSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDR 261
            +  A  V ++L + R           T     A     +     L    +     D   
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG 123

Query: 262 KMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLY 321
             TAL  AA+  +      ++  +    D  D+     L            K LL     
Sbjct: 124 -KTALHWAAAVNNTEAVNILL-MHHANRDAQDDKDETPLFLAAREGSYEASKALLD---N 178

Query: 322 KSFIDEKNEMGNTPLHI 338
            +  +  + M   P  +
Sbjct: 179 FANREITDHMDRLPRDV 195

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 3e-12
 Identities = 48/237 (20%), Positives = 88/237 (37%), Gaps = 18/237 (7%)

Query: 124 EEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN-----GETPLYMAAARGSKKMVAE 178
           E+ +T LH AV  GNL AV  L+           ++      +TPL++A       +V  
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQ--GGRELDIYNNLRQTPLHLAVITTLPSVVRL 58

Query: 179 ILEKCSSAAHDGPNGKTALHAAVNSYAAD---VVEKLLAKKRHLTRERDDCGWTPLHHSA 235
           ++   +S      +G+TA H A    +      +    A        R+  G T LH + 
Sbjct: 59  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 118

Query: 236 YLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNG 295
               ++   LLLE       +  K  +    L+ A + +      ++  +    +     
Sbjct: 119 NTECQETVQLLLERGADIDAVDIKSGRSP--LIHAVENNSLSMVQLLLQHGANVNAQMYS 176

Query: 296 GWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVR 352
           G + LH          ++ L++     +    KN   +TPL +     +R   +I+R
Sbjct: 177 GSSALHSASGRGLLPLVRTLVR---SGADSSLKNCHNDTPLMVAR---SRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 27/222 (12%)

Query: 78  GDSPLHAAAKCGRPAVVKVLIEFA----------------------KKQPTAMKCCAKTA 115
           GD+PLH A   G    V  L+                              ++     TA
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 116 WQMLGLTNEEENTALHEAVQCGNLDAVKILMEAG---PNFPYSANVNGETPLYMAAARGS 172
                  +    TA H A +  +   ++ L+++         + N +G T L++A     
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 173 KKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLH 232
           ++ V  +LE+ +           +         +  + +LL +       +   G + LH
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH 182

Query: 233 HSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGH 274
            ++  GL  +   L+   G+ + + +     T L++A S+  
Sbjct: 183 SASGRGLLPLVRTLVRS-GADSSLKNCHND-TPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 15/85 (17%)

Query: 59  FVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQM 118
            + Q+L    + +      G S LH+A+  G   +V+ L+                +   
Sbjct: 158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR---------------SGAD 202

Query: 119 LGLTNEEENTALHEAVQCGNLDAVK 143
             L N   +T L  A     +D ++
Sbjct: 203 SSLKNCHNDTPLMVARSRRVIDILR 227

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 64.4 bits (155), Expect = 5e-12
 Identities = 41/246 (16%), Positives = 79/246 (32%), Gaps = 41/246 (16%)

Query: 72  IQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQP---------------TAMKCC----- 111
           I       + LH  A        + LI    K+                T +        
Sbjct: 27  IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR 86

Query: 112 ------AKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYS---------- 155
                    A     + N+ E +ALH+A    +   +  ++ +                 
Sbjct: 87  RRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 146

Query: 156 ---ANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKL 212
                 N       +A    +K      +  +    +   G+TALH A       +V+ L
Sbjct: 147 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 206

Query: 213 LAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQ 272
           + +K     ++D+ G TP+  +A  G  ++   L++  G+S   +D     TA  +A + 
Sbjct: 207 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDH-TARQLAQAN 264

Query: 273 GHESLA 278
            H ++ 
Sbjct: 265 NHHNIV 270

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.1 bits (149), Expect = 2e-11
 Identities = 36/279 (12%), Positives = 87/279 (31%), Gaps = 38/279 (13%)

Query: 79  DSPLH-AAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
           +SP+       G  A+ + +   +                   +      T LH      
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNI----------------IDPRHNRTVLHWIASNS 44

Query: 138 NLDAVKILMEAGPNFPYS--ANVN-----GETPLYMAAARGSKKMVAEILEKCSSAAHDG 190
           + +  + L+        +  A+VN       TPL +A     +++VA +++  +      
Sbjct: 45  SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN 104

Query: 191 PNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSA-----------YLGL 239
            + ++ALH A  +    ++  +L   +      +                         L
Sbjct: 105 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL 164

Query: 240 KDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNV 299
                  +++DG++    +K +  TAL  AA   +  +   ++       D  D  G   
Sbjct: 165 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP 224

Query: 300 LHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
           +           +  L++     + ++  +   +T   +
Sbjct: 225 IMLAAQEGRIEVVMYLIQ---QGASVEAVDATDHTARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.1 bits (131), Expect = 6e-09
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 1/110 (0%)

Query: 108 MKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMA 167
                            +  TALH A Q  N+  VK L+    +     + +G+TP+ +A
Sbjct: 169 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 228

Query: 168 AARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKR 217
           A  G  ++V  ++++ +S         TA   A  +   ++V+ +  + R
Sbjct: 229 AQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD-IFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 22/163 (13%), Positives = 50/163 (30%), Gaps = 4/163 (2%)

Query: 87  KCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILM 146
                 ++  ++   K +    +        ++ + + E       A     ++    + 
Sbjct: 116 ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD--QVASAKLLVEKGAKVD 173

Query: 147 EAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD-GPNGKTALHAAVNSYA 205
             G     S    G T L+ AA   +  +V  ++ +  S       +GKT +  A     
Sbjct: 174 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 233

Query: 206 ADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
            +VV  L+ +   +    D    T    +      +I  +   
Sbjct: 234 IEVVMYLIQQGASVE-AVDATDHTARQLAQANNHHNIVDIFDR 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.0 bits (154), Expect = 7e-12
 Identities = 48/239 (20%), Positives = 92/239 (38%), Gaps = 31/239 (12%)

Query: 125 EENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCS 184
           ++      A   G+ + V  L+E G +    ANV+G T L+ A    +  MV  ++E  +
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGA 97

Query: 185 SAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITA 244
           +       G   LHAA +    D+ E L+++  H     +  G TPL  +    ++++  
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQ 156

Query: 245 LLLEFDGSSALILDKDRK-------------------------MTALLMAASQGHESLAG 279
             +   G       K+ +                          TAL +AA++G+  +  
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 280 TIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHI 338
            +I    +  ++ D  GW  LH       E   + L++       ++  N++G T   +
Sbjct: 217 LLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVE---NLCDMEAVNKVGQTAFDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 49  NKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAM 108
            KE E +  +   Q L       ++    G + LH AA  G   V+K+L          +
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL----------I 219

Query: 109 KCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAA 168
           +       +       +  T LH A   G  +A +IL+E   +   + N  G+T   + A
Sbjct: 220 QARYDVNIKD-----YDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDV-A 272

Query: 169 ARGSKKMVAEILEK 182
                  + E+ +K
Sbjct: 273 DEDILGYLEELQKK 286

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 146 MEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYA 205
           + +G         +G T L++AAA+G  +++  +++          +G T LHAA +   
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 206 ADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
            +    L+     +    +  G T    +     +DI   L E
Sbjct: 245 EEACRILVENLCDME-AVNKVGQTAFDVAD----EDILGYLEE 282

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 1e-09
 Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 13/205 (6%)

Query: 159 NGETPLYMAAARGSKKMVAEILEKCSSAAHD----GPNGKTALHAAVNSYAADVVEKLLA 214
           +G++ L++A     K +  E++ +               +T LH AV +   ++ E LL 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 215 KKRHLTRERDDCGWTPLHHSAYLGL---KDITALLLEFDGSSALILDKDRKMTALLMAAS 271
                                   L     +T         S L        T L +A+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 272 QGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEM 331
            G+  +   +++   +        G   LH  +   +   +  LLK     + ++     
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK---CGADVNRVTYQ 177

Query: 332 GNTPLHILATLSARTCNEIVRQIGK 356
           G +P  +      R    I +Q+G+
Sbjct: 178 GYSPYQLTW---GRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 6e-09
 Identities = 40/222 (18%), Positives = 66/222 (29%), Gaps = 18/222 (8%)

Query: 78  GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
           GDS LH A      A+   +I   K                L   N  + T LH AV   
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLA-----------FLNFQNNLQQTPLHLAVITN 50

Query: 138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEI-----LEKCSSAAHDGPN 192
             +  + L+ AG +                       +             S       N
Sbjct: 51  QPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN 110

Query: 193 GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGS 252
           G T LH A       +VE L++    +  +    G T LH +  L   D+ +LLL+  G+
Sbjct: 111 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GA 169

Query: 253 SALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDN 294
               +      +   +   +    +   +     E   ++  
Sbjct: 170 DVNRVTYQ-GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 1e-07
 Identities = 38/220 (17%), Positives = 72/220 (32%), Gaps = 34/220 (15%)

Query: 33  NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPA 92
           +  + LH+ I          E   T  V + ++   + L   N    +PLH A    +P 
Sbjct: 1   DGDSFLHLAIIH-------EEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPE 53

Query: 93  VVKVLIEFAKKQPTAM------------------------KCCAKTAWQMLGLTNEEENT 128
           + + L+                                   C       +L  TN   +T
Sbjct: 54  IAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 113

Query: 129 ALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAH 188
            LH A   G L  V++L+  G +       NG T L++A    +  +V+ +L+  +    
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 173

Query: 189 DGPNGKTALHAAVNSYAADVVEKLL---AKKRHLTRERDD 225
               G +         +  + ++L     +   +  E +D
Sbjct: 174 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESED 213

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.6 bits (130), Expect = 2e-09
 Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 7/133 (5%)

Query: 123 NEEENTALHEAVQCGNLDAVKILMEAGPNF-----PYSANVNGETPLYMAAARGSKKM-- 175
              +  +L EAV+  ++  +      G +        + +   ET L++A     +    
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 176 VAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSA 235
           + + L + S          +               KLL + +      ++ G TPL  + 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 236 YLGLKDITALLLE 248
            L  +    LL +
Sbjct: 123 RLKHEHCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 12/161 (7%)

Query: 76  AKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQ 135
           A   + LH+  +  +   +  L++         +         L   +E + TALH AV+
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIP------LANGHEPDETALHLAVR 54

Query: 136 C---GNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPN 192
                +L  V  L++   N             Y      ++ +   +  K S    +  +
Sbjct: 55  SVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN-ES 113

Query: 193 GKTALHAAVNSYAADVVEKLLAK--KRHLTRERDDCGWTPL 231
           G+T L  A         E L      R  +    +  W  L
Sbjct: 114 GETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYEWRLL 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 23/135 (17%)

Query: 36  TVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKC---GRPA 92
             LH     +++K ++   +   + + +       L   +   ++ LH A +        
Sbjct: 5   AKLH--SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 93  VVKVLIE------------------FAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAV 134
           +V  L++                                     + + NE   T L  A 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 135 QCGNLDAVKILMEAG 149
           +  +    ++L +A 
Sbjct: 123 RLKHEHCEELLTQAL 137

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 16/134 (11%), Positives = 39/134 (29%), Gaps = 5/134 (3%)

Query: 189 DGPNGKTALHAAVNSYAADVVEKLLAK-----KRHLTRERDDCGWTPLHHSAYLGLKDIT 243
           D      +L  AV +     + +  A      ++       +   T LH +     +   
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 244 ALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFL 303
            ++     +S  +  +  K +  L        +    ++       ++ +  G   L   
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 304 MVSLHESKLKRLLK 317
               HE   + L +
Sbjct: 122 KRLKHEHCEELLTQ 135

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 6e-07
 Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 2/125 (1%)

Query: 124 EEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKC 183
           E     L  A   G ++ V+ L+EAG     +A  +           GS ++   +L   
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMMMGSARVAELLLLHG 58

Query: 184 SSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDIT 243
           +      P   T                +L +       RD  G  P+  +  LG +D+ 
Sbjct: 59  AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 118

Query: 244 ALLLE 248
             L  
Sbjct: 119 RYLRA 123

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.0 bits (107), Expect = 1e-06
 Identities = 34/151 (22%), Positives = 49/151 (32%), Gaps = 32/151 (21%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPN-------------------------------FPYS 155
              L EA + G  D V+ILM  G                                    +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 156 ANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAK 215
                 TPL+MAA+ G   +V  +L+  +          TALH A      +VV +LL K
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV-ELLIK 121

Query: 216 KRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
                  +     T    S   G +D+  +L
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 2e-06
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 7/159 (4%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA 186
              L  A   G++  V+ L+      P + N  G+T L +     +   +  + +  S  
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN 62

Query: 187 AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
             D         AA   +   +      +        D  G  P+H +   G   +    
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVL--VEHGADVNVPDGTGALPIHLAVQEGHTAVV--- 117

Query: 247 LEFDGSSALILDKDRK-MTALLMAASQGHESLAGTIIAH 284
             F  + + +  +D + +T L +A  +G + L   +  H
Sbjct: 118 -SFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 26/172 (15%), Positives = 46/172 (26%), Gaps = 18/172 (10%)

Query: 77  KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC 136
           +    L  AA  G    V+ L+      P A+    KTA Q++   +      L +    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 137 GNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTA 196
            N+                     +  +           V       +   H        
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEH------GADVNVPDGTGALPIHLAVQEGHT 114

Query: 197 LHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
              +  +  +D+              RD  G TPL  +   G +D+  +L  
Sbjct: 115 AVVSFLAAESDL------------HRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 11/160 (6%)

Query: 193 GKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGS 252
               L  A        V +LL ++       +  G T L    +           E    
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIAL----ELLKQ 57

Query: 253 SALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKL 312
            A    +D   T+ +  A++        ++  +    ++ D  G   +H  +   H + +
Sbjct: 58  GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117

Query: 313 KRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVR 352
             L  +    S +  ++  G TPL +      R   ++V 
Sbjct: 118 SFLAAE----SDLHRRDARGLTPLELAL---QRGAQDLVD 150

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 4e-06
 Identities = 26/152 (17%), Positives = 45/152 (29%), Gaps = 31/152 (20%)

Query: 128 TALHEAVQCGNLDAVKILMEAGPN-------------------------------FPYSA 156
             L  A   G+L+ +  L++   N                                P   
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 157 NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKK 216
           +  G   ++ AA  G    +  +LE  +    +   G   LH A       VVE L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 217 RHLTRERDDCGWTPLHHSAYLGLKDITALLLE 248
                 R+  G T    +   G  ++ +L+  
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 7e-05
 Identities = 9/42 (21%), Positives = 17/42 (40%)

Query: 108 MKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAG 149
           ++   K     +G  N + +TA   A   G  + V ++   G
Sbjct: 115 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 3/123 (2%)

Query: 128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAA 187
             L ++   G  D V+ ++    + P   N  G T L+ A   G  ++V  +++   +  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEV-DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 61

Query: 188 HDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTP--LHHSAYLGLKDITAL 245
               +G T LH A +     V + L+     +         T          G    +  
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 246 LLE 248
           L  
Sbjct: 122 LYG 124

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 5/120 (4%)

Query: 127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSA 186
           +     A++ G+LD VK  +  G +   +     +   Y   A   +  + E L    + 
Sbjct: 3   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA--ADCGQLEILEFLLLKGAD 60

Query: 187 AHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALL 246
            +           +          KLL  K      +   G T L  +     + I ALL
Sbjct: 61  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN---QAIKALL 117

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.6 bits (85), Expect = 5e-04
 Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 20/136 (14%)

Query: 78  GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCG 137
            D     A K G    VK  +   +     ++   K                        
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA----------------ADC 45

Query: 138 NLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTAL 197
               +   +        + + +  TPL  A   G    V  +L K +     GP+G TAL
Sbjct: 46  GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105

Query: 198 HAAVNSYAADVVEKLL 213
            A  N      ++ LL
Sbjct: 106 EATDN----QAIKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	525
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.98
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.83

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-47  Score=383.67  Aligned_cols=354  Identities=23%  Similarity=0.271  Sum_probs=314.1

Q ss_pred             hHHHHHHHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHH
Q 009805            3 PKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPL   82 (525)
Q Consensus         3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpL   82 (525)
                      ++||.||..|+.++|++|+++|++++..|..|+||||+|+..       |+.+++++|++.    +.+++.+|.+|.|||
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~-------g~~~iv~~Ll~~----gadi~~~~~~g~t~L   70 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-------GHTEVAKYLLQN----KAKVNAKAKDDQTPL   70 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH-------TCHHHHHHHHHH----TCCSSCCCTTSCCHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-------CCHHHHHHHHHC----cCCCCCCCCCCCCHH
Confidence            579999999999999999999999999999999999999999       999999999874    667889999999999


Q ss_pred             HHHHHcCChhHHHHHHHhhhcCChhHhhh------------------hhhhHHHhcCccCCCChHhHHHHHcCCHHHHHH
Q 009805           83 HAAAKCGRPAVVKVLIEFAKKQPTAMKCC------------------AKTAWQMLGLTNEEENTALHEAVQCGNLDAVKI  144 (525)
Q Consensus        83 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~------------------~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~  144 (525)
                      |+|+..|+.+++++|++...+........                  ...........+..+.++|+.|+..++.++++.
T Consensus        71 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~  150 (408)
T d1n11a_          71 HCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL  150 (408)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHH
Confidence            99999999999999998876532110000                  000011235678899999999999999999999


Q ss_pred             HHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCC
Q 009805          145 LMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERD  224 (525)
Q Consensus       145 Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d  224 (525)
                      |+++|.+++ ..+..|.+|||+|+..|+.+++++|+++|++++..+..|.||+|.+....+.++...++..... ....+
T Consensus       151 ll~~~~~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~~  228 (408)
T d1n11a_         151 LLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAES  228 (408)
T ss_dssp             HHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred             HHHcCCCCC-cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhcccc-ccccC
Confidence            999999876 6778899999999999999999999999999999999999999999999999999999988777 56778


Q ss_pred             CCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHH
Q 009805          225 DCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLM  304 (525)
Q Consensus       225 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  304 (525)
                      ..+.|||++|+..++.++++.+.+.+... ...+. .|.||++.|+..++.+++++|++++++ ++..+..+.||||.++
T Consensus       229 ~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~-~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~  305 (408)
T d1n11a_         229 VQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVAS  305 (408)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHH
T ss_pred             CCCCCHHHHHHHhCcHhHhhhhhcccccc-ccccC-CCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhc
Confidence            88999999999999999999999987766 34444 689999999999999999999999998 6788899999999999


Q ss_pred             hcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHhccCCChHHHHhhcC
Q 009805          305 VSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVNKKKISVKHIELYGC  377 (525)
Q Consensus       305 ~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n~~g~t~l~~a~~~~  377 (525)
                      ..++.++++.+++.   +.++|.+|.+|+||||+|++.|...+ +.|++  .|+|++.+|++|+||+|+|.+.+
T Consensus       306 ~~~~~~~~~~ll~~---g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~--~GAd~n~~d~~G~t~L~~A~~~~  374 (408)
T d1n11a_         306 HYGNIKLVKFLLQH---QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK--NGASPNEVSSDGTTPLAIAKRLG  374 (408)
T ss_dssp             HSSCSHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCSCCCCSSSCCHHHHHHHTT
T ss_pred             ccCcceeeeeeccc---cccccccCCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcC
Confidence            99999999999985   45699999999999999999987766 77888  89999999999999999999754

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-42  Score=342.52  Aligned_cols=321  Identities=26%  Similarity=0.300  Sum_probs=289.8

Q ss_pred             ChHHHHHHHcCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHH-----------------
Q 009805            2 EPKLYEAATNGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQIL-----------------   64 (525)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~-----------------   64 (525)
                      +++||.|+..|+.+++++|+++|++.+..+.+|.||||+|+..       |+.+++++|+...                 
T Consensus        34 ~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~-------g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  106 (408)
T d1n11a_          34 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI-------GHTNMVKLLLENNANPNLATTAGHTPLHIA  106 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHH-------TCHHHHHHHHHHTCCTTCCCTTCCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc-------CCHHHHHHHHHhhhccccccccccchhhhh
Confidence            4689999999999999999999999999999999999999999       9999999997631                 


Q ss_pred             ------------HhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHH
Q 009805           65 ------------EICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHE  132 (525)
Q Consensus        65 ------------~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~  132 (525)
                                  ...+......+..+.++|+.|+..++.++++.|++.+.+               ++..+.+|.+|||+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~---------------~~~~~~~~~~~L~~  171 (408)
T d1n11a_         107 AREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH---------------PNAAGKNGLTPLHV  171 (408)
T ss_dssp             HHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------------TTCCCSSCCCHHHH
T ss_pred             hhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC---------------CCcCCCcCchHHHH
Confidence                        111233345678899999999999999999999999887               56788899999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 009805          133 AVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKL  212 (525)
Q Consensus       133 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  212 (525)
                      |+..|+.+++++|+++|++++ ..+..|.||+|.++...+.++...++..+......+..+.|||+.|+..++.++++.+
T Consensus       172 A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~  250 (408)
T d1n11a_         172 AVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL  250 (408)
T ss_dssp             HHHTTCHHHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhcCCccc-ccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhh
Confidence            999999999999999999976 6788999999999999999999999999988888899999999999999999999999


Q ss_pred             HHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccc
Q 009805          213 LAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLV  292 (525)
Q Consensus       213 l~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  292 (525)
                      +..+.. .+..+..|.|||+.|+..++.+++++|+++|.+. ...+. .+.||||.++..++.++++++++.+.+ ++.+
T Consensus       251 ~~~~~~-~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~-~~~t~L~~~~~~~~~~~~~~ll~~g~~-in~~  326 (408)
T d1n11a_         251 LSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTR-MGYTPLHVASHYGNIKLVKFLLQHQAD-VNAK  326 (408)
T ss_dssp             HTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCS-SCCCHHHHHHHSSCSHHHHHHHHTTCC-TTCC
T ss_pred             hccccc-cccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccc-cccccchhhcccCcceeeeeecccccc-cccc
Confidence            998877 5778899999999999999999999999999887 33444 688999999999999999999999988 7889


Q ss_pred             cCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhHHHHHH
Q 009805          293 DNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVR  352 (525)
Q Consensus       293 d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~~~ll~  352 (525)
                      |.+|+||||+|+++|+.+++++|++.   ++++|.+|.+|+||||+|++.|+..+..+|.
T Consensus       327 d~~G~T~Lh~A~~~g~~~iv~~Ll~~---GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         327 TKLGYSPLHQAAQQGHTDIVTLLLKN---GASPNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999995   4669999999999999999999887755554

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-35  Score=265.82  Aligned_cols=220  Identities=23%  Similarity=0.260  Sum_probs=184.6

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 009805           78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSAN  157 (525)
Q Consensus        78 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  157 (525)
                      ++++|+.+|..|+.+.|+.++.....              .++.+|..|+||||+|+..|+.+++++|++.+.... ..+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~--------------~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~-~~~   67 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKS--------------LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKD   67 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGG--------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCC--------------cCcCcCCCCCCHHHHHHHhhhhcccccccccccccc-ccc
Confidence            46788889999999988888776543              267789999999999999999999999999887765 556


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHc
Q 009805          158 VNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYL  237 (525)
Q Consensus       158 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~  237 (525)
                      ..+.++++.++..++.+++++|++++++++.+|..|.||||+|+..++.+++++|++++.+ ++.++..|.||||+|+..
T Consensus        68 ~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~  146 (223)
T d1uoha_          68 DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAK  146 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             ccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhc
Confidence            6788999999999999999999999999988999999999999999999999999988887 577888888999998888


Q ss_pred             CChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhh
Q 009805          238 GLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLK  317 (525)
Q Consensus       238 g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~  317 (525)
                      ++.+++++|.+.+.+. +..+. .|+||||.|+..|+.+++++|+++|++ ++.+|.+|+||||+| ..++.++++.|++
T Consensus       147 ~~~~~~~~L~~~~~~i-~~~d~-~g~TpL~~Aa~~g~~~~v~~LL~~Gad-~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         147 GNLKMIHILLYYKAST-NIQDT-EGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             TCHHHHHHHHHTTCCS-CCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             CCcchhhhhcccccee-eeccC-CCCceeccccccCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            8888888888888776 44444 688888888888888888888888887 677888888888887 4688888888775

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-35  Score=266.72  Aligned_cols=220  Identities=24%  Similarity=0.261  Sum_probs=202.8

Q ss_pred             CCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhh
Q 009805           34 KHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAK  113 (525)
Q Consensus        34 g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  113 (525)
                      ++++|+.+|+.       |+.+.++.++   ...+.+++.+|.+|+||||+|+..|+.+++++|++.+..          
T Consensus         3 ~~~~~~~~a~~-------G~~~~v~~~l---~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~----------   62 (223)
T d1uoha_           3 SNLMVCNLAYS-------GKLEELKESI---LADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----------   62 (223)
T ss_dssp             SSSHHHHHHHT-------TCHHHHHHHH---HHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC----------
T ss_pred             CHHHHHHHHHh-------CCHHHHHHHH---HhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccc----------
Confidence            46889999999       9999998884   457888999999999999999999999999999999876          


Q ss_pred             hhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCC
Q 009805          114 TAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNG  193 (525)
Q Consensus       114 ~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g  193 (525)
                           ....+..+.++++.++..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|++++.++..|
T Consensus        63 -----~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~-~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~  136 (223)
T d1uoha_          63 -----VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE  136 (223)
T ss_dssp             -----SCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             -----cccccccccccccccccccccchhHHHhccCceeE-eeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence                 34467788999999999999999999999999876 788899999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcC
Q 009805          194 KTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQG  273 (525)
Q Consensus       194 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g  273 (525)
                      .||||+|+..++.+++++|++.+.+ ++.+|.+|+||||+|+..|+.+++++|+++|+++ +..+. .|+||||+| ..|
T Consensus       137 ~t~L~~a~~~~~~~~~~~L~~~~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~-~~~d~-~g~tpl~~A-~~~  212 (223)
T d1uoha_         137 ATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENK-EEKTPLQVA-KGG  212 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCT-TSCCHHHHC-CTT
T ss_pred             CccchhhhhcCCcchhhhhccccce-eeeccCCCCceeccccccCcHHHHHHHHHCCCCC-CCCCC-CCCCHHHHH-HCC
Confidence            9999999999999999999999988 6889999999999999999999999999999987 55565 799999998 579


Q ss_pred             CHHHHHHHHh
Q 009805          274 HESLAGTIIA  283 (525)
Q Consensus       274 ~~~~v~~Ll~  283 (525)
                      +.+++++|++
T Consensus       213 ~~~i~~~Ll~  222 (223)
T d1uoha_         213 LGLILKRMVE  222 (223)
T ss_dssp             HHHHHHHHHC
T ss_pred             CHHHHhcccC
Confidence            9999999986

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-35  Score=274.04  Aligned_cols=233  Identities=20%  Similarity=0.175  Sum_probs=160.6

Q ss_pred             ccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCC
Q 009805           73 QTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNF  152 (525)
Q Consensus        73 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  152 (525)
                      ..+.+|.||||+||+.|+.+++++|++.+++..            .++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~------------~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i   71 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE------------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV   71 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcc------------cccCcCCCCCCccchHHhhcccccccccccccccc
Confidence            467899999999999999999999999987632            26788999999999999999999999999999998


Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCC----------CCCcHHHHHH---HcCCHHHHHHHHHhcCcC
Q 009805          153 PYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGP----------NGKTALHAAV---NSYAADVVEKLLAKKRHL  219 (525)
Q Consensus       153 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------~g~t~L~~A~---~~~~~~~~~~Ll~~~~~~  219 (525)
                      + ..|..|.||||+|+..++.+++++|++.+........          ...+....+.   ..........+.......
T Consensus        72 ~-~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (255)
T d1oy3d_          72 L-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ  150 (255)
T ss_dssp             S-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG
T ss_pred             c-ccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcc
Confidence            7 6888999999999999999999999987644322110          0111111111   111111111111111112


Q ss_pred             cccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCch
Q 009805          220 TRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNV  299 (525)
Q Consensus       220 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~  299 (525)
                      .+.+|..|.||||+|+..++.+++++|++++.......+. .|.||||+|+..|+.+++++|++++++ ++.+|..|+||
T Consensus       151 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~TpL~~A~~~~~~~~v~~Ll~~gad-in~~d~~g~t~  228 (255)
T d1oy3d_         151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT-CGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTP  228 (255)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             cccccccCcccccccccccccccccchhcccccccccccc-cccccccccccccHHHHHHHHHHCCCC-CCCCCCCCCCH
Confidence            3556667777777777777777777777776665433333 567777777777777777777777766 56677777777


Q ss_pred             hHHHHhcCCHHHHHHHhhCcc
Q 009805          300 LHFLMVSLHESKLKRLLKDPL  320 (525)
Q Consensus       300 Lh~A~~~~~~~~~~~ll~~~~  320 (525)
                      ||+|+.+++.++++.|++.+.
T Consensus       229 L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         229 LGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHcCC
Confidence            777777777777777776543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.9e-35  Score=270.25  Aligned_cols=232  Identities=22%  Similarity=0.215  Sum_probs=186.4

Q ss_pred             cCCCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhh
Q 009805           31 HNNKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKC  110 (525)
Q Consensus        31 ~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  110 (525)
                      +++|.||||+||++       |+.+++++|++ .......++.+|.+|+||||+|+..|+.+++++|++.|++       
T Consensus         6 ~~~G~t~Lh~A~~~-------~~~~~v~~Ll~-~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-------   70 (255)
T d1oy3d_           6 TEDGDTALHLAVIH-------QHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-------   70 (255)
T ss_dssp             CTTCCCHHHHHHHT-------TCHHHHHHHHH-HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------
T ss_pred             CcCCCCHHHHHHHc-------CCHHHHHHHHH-cCCCcccccCcCCCCCCccchHHhhccccccccccccccc-------
Confidence            34999999999999       99999999988 4445666888999999999999999999999999999987       


Q ss_pred             hhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCC---------CCchHHHHHHH---cC-CHHHHH
Q 009805          111 CAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANV---------NGETPLYMAAA---RG-SKKMVA  177 (525)
Q Consensus       111 ~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~---------~g~tpL~~A~~---~g-~~~~v~  177 (525)
                              ++.+|.+|.||||+|+..|+.++++.|++.+.........         ...+....+..   .. ......
T Consensus        71 --------i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (255)
T d1oy3d_          71 --------VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP  142 (255)
T ss_dssp             --------SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------
T ss_pred             --------ccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHH
Confidence                    6778999999999999999999999999876543211110         11111111111   11 111222


Q ss_pred             HHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhc
Q 009805          178 EILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALIL  257 (525)
Q Consensus       178 ~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  257 (525)
                      .....+.+++.++.+|.||||+|+..++.+++++|++.+.+.....+..|.||||+|+..|+.+++++|+++|+++ +..
T Consensus       143 ~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi-n~~  221 (255)
T d1oy3d_         143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TAR  221 (255)
T ss_dssp             -CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred             HhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCC-CCC
Confidence            2233456677889999999999999999999999999999877777889999999999999999999999999887 555


Q ss_pred             ccCCCCcHHHHHHhcCCHHHHHHHHhhCCC
Q 009805          258 DKDRKMTALLMAASQGHESLAGTIIAHYPE  287 (525)
Q Consensus       258 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  287 (525)
                      +. .|+||||+|+..|+.+++++|+++|++
T Consensus       222 d~-~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         222 MY-GGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CT-TSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CC-CCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            55 799999999999999999999999986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-33  Score=262.20  Aligned_cols=264  Identities=22%  Similarity=0.242  Sum_probs=225.1

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCc-cCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCC
Q 009805           77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLT-NEEENTALHEAVQCGNLDAVKILMEAGPNFPYS  155 (525)
Q Consensus        77 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  155 (525)
                      +++|+||.|++.|+.++|++|++.|++               ++.+ +..|.||||+|+..|+.+++++|++.+.... .
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~d---------------in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~-~   67 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGAN---------------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-L   67 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCC---------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCC---------------cCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccc-c
Confidence            357999999999999999999999987               4444 4579999999999999999999999998865 5


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCc---------ccCCCC
Q 009805          156 ANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLT---------RERDDC  226 (525)
Q Consensus       156 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~---------~~~d~~  226 (525)
                      .+..+.+|.+.++..+..+....++++..+....+..+.++++.|+..++...+..++....+..         ...+..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (285)
T d1wdya_          68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG  147 (285)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCC
T ss_pred             cccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhccc
Confidence            67789999999999999999999999988877788899999999999999999999998765521         234567


Q ss_pred             CCcHHHHHHHcCChhHHHHHhhc-CCCcchhcccCCCCcHHHHHHhc----CCHHHHHHHHhhCCCccccccCCCCchhH
Q 009805          227 GWTPLHHSAYLGLKDITALLLEF-DGSSALILDKDRKMTALLMAASQ----GHESLAGTIIAHYPECYDLVDNGGWNVLH  301 (525)
Q Consensus       227 g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A~~~----g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh  301 (525)
                      |.||||+|+..|+.+++++|+++ +.+. ...+. .|.++++.+...    +..+++++|++++++ ++.+|..|+||||
T Consensus       148 g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~~~~g~t~L~  224 (285)
T d1wdya_         148 GATALMDAAEKGHVEVLKILLDEMGADV-NACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLI  224 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHhccCCCc-ccccC-CCCcccccccccccchHHHHHHHHHHHCCCC-CCccCCCCCCccc
Confidence            99999999999999999999976 4444 44444 577777765543    345799999999998 6888999999999


Q ss_pred             HHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHh
Q 009805          302 FLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVN  363 (525)
Q Consensus       302 ~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n  363 (525)
                      +|++.++.+++++|++.  .+.++|.+|.+|+||||+|++.+...+ ..|++  .|+|+|++|
T Consensus       225 ~a~~~~~~~~v~~lL~~--~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~--~GAd~n~~d  283 (285)
T d1wdya_         225 LAVEKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLLAVELKLKKIAELLCK--RGASTDCGD  283 (285)
T ss_dssp             HHHHTTCHHHHHHHHHS--SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH--HSSCSCCSS
T ss_pred             hhhhcCcHHHHHHHHHc--CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCccc
Confidence            99999999999999974  246799999999999999999997766 77888  888888776

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-33  Score=255.90  Aligned_cols=192  Identities=25%  Similarity=0.292  Sum_probs=89.3

Q ss_pred             cCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCC--CCCCCCCCc
Q 009805          120 GLTNEEENTALHEAVQCGNLDAVKILMEAGPNFP--YSANVNGETPLYMAAARGSKKMVAEILEKCSSA--AHDGPNGKT  195 (525)
Q Consensus       120 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t  195 (525)
                      +.+|.+|.||||+|+..|+.+++++|+++|++++  ...+..|.+|+++++..+..++++.++..+...  ...+..+.+
T Consensus        28 ~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d1ixva_          28 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT  107 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCC
T ss_pred             cccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3344444444444444444444444444444432  123334444444444444444444444444322  223334444


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCH
Q 009805          196 ALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHE  275 (525)
Q Consensus       196 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~  275 (525)
                      +++.++..++.++++.|++.+.. ....|..|+||||+|+..|+.++++.|++.+....+..+. .|+||||+|+.+|+.
T Consensus       108 ~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~-~g~TpLh~A~~~~~~  185 (229)
T d1ixva_         108 CLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHG  185 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCT-TSCCHHHHHHHTTCH
T ss_pred             ccccccccchhhhhhhhhhhccc-ccccCCCCCCccchhhhccccccccccccccccccccccc-ccCCchhhhcccccH
Confidence            55555444455555544444444 2334444555555555555555555555444333233333 455555555555555


Q ss_pred             HHHHHHHhh-CCCccccccCCCCchhHHHHhcCCHHHHHHHhh
Q 009805          276 SLAGTIIAH-YPECYDLVDNGGWNVLHFLMVSLHESKLKRLLK  317 (525)
Q Consensus       276 ~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~  317 (525)
                      +++++|+++ |.+ ++.+|.+|+||||+|+.   .+++++|++
T Consensus       186 ~~v~~Ll~~~gad-~~~~d~~g~t~l~~A~~---~~~~~~Ll~  224 (229)
T d1ixva_         186 DAAVLLVEKYGAE-YDLVDNKGAKAEDVALN---EQVKKFFLN  224 (229)
T ss_dssp             HHHHHHHHHHCCC-SCCCCTTSCCTGGGCSC---HHHHHHHHH
T ss_pred             HHHHHHHHhcCCC-CCCcCCCCCCHHHHHhh---HHHHHHHHH
Confidence            555555543 333 44455555555555542   244455554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3e-33  Score=263.09  Aligned_cols=251  Identities=18%  Similarity=0.179  Sum_probs=121.5

Q ss_pred             cCCcchhhhhhhhccccccccCCCCchhhhhhhcccccccCCchhhHHHHHHHH----HhCCccccccCCCCCcHHHHHH
Q 009805           11 NGEIEPFNGIAKDNLRSIVTHNNKHTVLHVNIARQSLKNKEGESVSTKFVEQIL----EICPSLLIQTNAKGDSPLHAAA   86 (525)
Q Consensus        11 ~g~~~~v~~ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~----~~~~~~l~~~~~~g~tpLh~A~   86 (525)
                      .|+.++++.|.+.+++...++ .|+||||+||..       |+.+++++|+...    -..+.+++.+|.+|+||||+|+
T Consensus        11 ~~~~~~~~~l~~~~~n~~~~~-~g~T~Lh~A~~~-------g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~   82 (277)
T d2fo1e1          11 AGSYAITEPITRESVNIIDPR-HNRTVLHWIASN-------SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAV   82 (277)
T ss_dssp             HSSSCCCSCCSTTTTTTCCCS-SCCCHHHHHHCT-------TCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHHhcCCCcCCCC-CCccHHHHHHHc-------CCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccc
Confidence            355555555555566653323 577777777777       7777777765421    1123344444445555555555


Q ss_pred             HcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHH
Q 009805           87 KCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYM  166 (525)
Q Consensus        87 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  166 (525)
                      +.|+.++|++|+++|++               ++.+|.+|.|||++|+..++.++++.+...+..               
T Consensus        83 ~~g~~~iv~~Ll~~Gad---------------~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~---------------  132 (277)
T d2fo1e1          83 LARRRRLVAYLMKAGAD---------------PTIYNKSERSALHQAAANRDFGMMVYMLNSTKL---------------  132 (277)
T ss_dssp             HHTCHHHHHHHHHTTCC---------------SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHH---------------
T ss_pred             ccccccccccccccccc---------------cccccccccccccchhhhcchhhhhhhhhcccc---------------
Confidence            55555555555554444               333444444555555444444444444432210               


Q ss_pred             HHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHH---HHHHHHHhcCc-------CcccCCCCCCcHHHHHHH
Q 009805          167 AAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAAD---VVEKLLAKKRH-------LTRERDDCGWTPLHHSAY  236 (525)
Q Consensus       167 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~---~~~~Ll~~~~~-------~~~~~d~~g~tpL~~A~~  236 (525)
                                      ...++..+..+.++.+.+...+..+   .+..+.+....       .....+..|.||||+++.
T Consensus       133 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~  196 (277)
T d2fo1e1         133 ----------------KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ  196 (277)
T ss_dssp             ----------------HHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHS
T ss_pred             ----------------cccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccc
Confidence                            0223333444444444444433222   12222221111       012334445555555555


Q ss_pred             cCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHh
Q 009805          237 LGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLL  316 (525)
Q Consensus       237 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll  316 (525)
                      .++.+++++++..........+. .|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+++|+.++++.|+
T Consensus       197 ~~~~~~~~~~l~~~~~~~~~~d~-~g~tpL~~A~~~g~~~iv~~Ll~~gad-in~~d~~G~T~L~~A~~~~~~~iv~lL~  274 (277)
T d2fo1e1         197 VSNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFD  274 (277)
T ss_dssp             SCCHHHHHHHHHHSCCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccccccccccccccCC-CCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            55555555544333322233333 455566666666666666666655555 4555556666666666666666655554


Q ss_pred             h
Q 009805          317 K  317 (525)
Q Consensus       317 ~  317 (525)
                      +
T Consensus       275 ~  275 (277)
T d2fo1e1         275 R  275 (277)
T ss_dssp             T
T ss_pred             H
Confidence            3

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.7e-33  Score=251.98  Aligned_cols=224  Identities=20%  Similarity=0.216  Sum_probs=197.3

Q ss_pred             ChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCC---CCCCCCcHHHHHHHc
Q 009805          127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAH---DGPNGKTALHAAVNS  203 (525)
Q Consensus       127 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~---~~~~g~t~L~~A~~~  203 (525)
                      +||||+||..|+.++++.|++.++.....+|.+|+||||+|+..|+.+++++|+++|++++.   .+..|.+|+|+++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            58999999999999999999987655568899999999999999999999999999998864   577899999999999


Q ss_pred             CCHHHHHHHHHhcCcC-cccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHH
Q 009805          204 YAADVVEKLLAKKRHL-TRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTII  282 (525)
Q Consensus       204 ~~~~~~~~Ll~~~~~~-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  282 (525)
                      +..++++.++..+... ....+..+.+|++.++..++.++++.|++.+... ...+. .|.||||+|+..|+.+++++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~-~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDK-FNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCT-TSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCC-CCCCccchhhhccccccccccc
Confidence            9999999999887643 4456778999999999999999999999998876 33444 7899999999999999999999


Q ss_pred             hhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhHHHHHHHhCCCC
Q 009805          283 AHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVRQIGKGD  358 (525)
Q Consensus       283 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~~~ll~~~~~~d  358 (525)
                      +.++..++.+|.+|+||||+|+.+++.+++++|++.  .+++++.+|.+|+||||+|+..  ..+..|++  .|+|
T Consensus       159 ~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~--~gad~~~~d~~g~t~l~~A~~~--~~~~~Ll~--~g~d  228 (229)
T d1ixva_         159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK--YGAEYDLVDNKGAKAEDVALNE--QVKKFFLN--NVVD  228 (229)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH--HCCCSCCCCTTSCCTGGGCSCH--HHHHHHHH--HCCC
T ss_pred             ccccccccccccccCCchhhhcccccHHHHHHHHHh--cCCCCCCcCCCCCCHHHHHhhH--HHHHHHHH--cCCC
Confidence            999877899999999999999999999999999963  2467999999999999999853  45588888  5655

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=6.9e-34  Score=267.51  Aligned_cols=253  Identities=17%  Similarity=0.194  Sum_probs=206.2

Q ss_pred             CcHHHHHHHc-CChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCcc-CCCChHhHHHHHcCCHHHHHHH--------Hhc
Q 009805           79 DSPLHAAAKC-GRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTN-EEENTALHEAVQCGNLDAVKIL--------MEA  148 (525)
Q Consensus        79 ~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~~~v~~L--------l~~  148 (525)
                      +||||++++. |..++++.|.+.+.+                 ..+ .+|+||||+|+..|+.++|+.|        +++
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n-----------------~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~   63 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVN-----------------IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA   63 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTT-----------------TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHT
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCC-----------------cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHc
Confidence            5899977654 666677766665533                 333 4699999999999999888776        567


Q ss_pred             CCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc--CcccCCCC
Q 009805          149 GPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH--LTRERDDC  226 (525)
Q Consensus       149 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~--~~~~~d~~  226 (525)
                      |++++ ..|..|+||||+|+..|+.+++++|+++|++++.++..|.|||+.|+..++.++++.+......  ..+..+..
T Consensus        64 Gadvn-~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~  142 (277)
T d2fo1e1          64 GADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN  142 (277)
T ss_dssp             CCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTT
T ss_pred             CCCcc-ccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccc
Confidence            88987 6789999999999999999999999999999999999999999999999999999998776432  24567888


Q ss_pred             CCcHHHHHHHcCChh---HHHHHhhcCCCcc------hhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCC
Q 009805          227 GWTPLHHSAYLGLKD---ITALLLEFDGSSA------LILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGW  297 (525)
Q Consensus       227 g~tpL~~A~~~g~~~---~v~~Ll~~~~~~~------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~  297 (525)
                      +.++.+.+...+..+   .+..+.+......      .......|.||||.++..++.+++++++...+...+.+|..|+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~  222 (277)
T d2fo1e1         143 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK  222 (277)
T ss_dssp             SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCC
T ss_pred             cchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCC
Confidence            999999999887644   3444444322211      1112236899999999999999999988877776888999999


Q ss_pred             chhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhHHHHHH
Q 009805          298 NVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIVR  352 (525)
Q Consensus       298 t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~~~ll~  352 (525)
                      ||||+|++.|+.+++++|++.   ++++|.+|.+|+||||+|++.|+..+..+|.
T Consensus       223 tpL~~A~~~g~~~iv~~Ll~~---gadin~~d~~G~T~L~~A~~~~~~~iv~lL~  274 (277)
T d2fo1e1         223 TPIMLAAQEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFD  274 (277)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHC---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999985   4669999999999999999999877755554

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-32  Score=255.43  Aligned_cols=266  Identities=19%  Similarity=0.210  Sum_probs=228.4

Q ss_pred             CCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCcccccc-CCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhh
Q 009805           33 NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQT-NAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCC  111 (525)
Q Consensus        33 ~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~-~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  111 (525)
                      +++|+||.|+++       |+.+++++|++.    +.+++.+ +..|.||||+|+..|+.+++++|++.+..        
T Consensus         4 ~~~~~L~~Ai~~-------~~~e~vk~Ll~~----G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~--------   64 (285)
T d1wdya_           4 EDNHLLIKAVQN-------EDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD--------   64 (285)
T ss_dssp             HHHHHHHHHHHT-------TCHHHHHHHHHT----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--------
T ss_pred             CCcHHHHHHHHc-------CCHHHHHHHHHC----CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccc--------
Confidence            357999999999       999999999762    5666554 45799999999999999999999999876        


Q ss_pred             hhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCC--
Q 009805          112 AKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHD--  189 (525)
Q Consensus       112 ~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~--  189 (525)
                             ....+..+.+|.+.+...+..+.....++...+.. ..+..+.++++.|+..++...++.++....+++..  
T Consensus        65 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  136 (285)
T d1wdya_          65 -------PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK  136 (285)
T ss_dssp             -------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCC
T ss_pred             -------ccccccccchhhHHHhhcCCccccchhhhhccccc-ccccCCCchhHHHHHhcchhhhhhhhhhccccccccc
Confidence                   45567889999999999999999999999877654 67788999999999999999999999988766543  


Q ss_pred             --------CCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcC----ChhHHHHHhhcCCCcchhc
Q 009805          190 --------GPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG----LKDITALLLEFDGSSALIL  257 (525)
Q Consensus       190 --------~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g----~~~~v~~Ll~~~~~~~~~~  257 (525)
                              +..|.||||+|+++++.+++++|+++....++..+..|.++++.+...+    ..++++.|+++|++. +..
T Consensus       137 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~  215 (285)
T d1wdya_         137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVR  215 (285)
T ss_dssp             CCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCC
T ss_pred             chhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-Ccc
Confidence                    4569999999999999999999998754447888999999888776554    357999999999987 444


Q ss_pred             ccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCC
Q 009805          258 DKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNE  330 (525)
Q Consensus       258 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~  330 (525)
                      +. .|.||||.|+..|+.+++++|++.++..++.+|.+|+||||+|+++++.+++++|++   .++++|++|.
T Consensus       216 ~~-~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~---~GAd~n~~d~  284 (285)
T d1wdya_         216 GE-RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK---RGASTDCGDL  284 (285)
T ss_dssp             CT-TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH---HSSCSCCSSC
T ss_pred             CC-CCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH---CCCCCCcccC
Confidence            54 799999999999999999999987554488999999999999999999999999998   4566888873

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.98  E-value=1.7e-32  Score=259.89  Aligned_cols=237  Identities=21%  Similarity=0.237  Sum_probs=192.7

Q ss_pred             CCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCC
Q 009805           76 AKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYS  155 (525)
Q Consensus        76 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  155 (525)
                      .++.|||+.||..|+.++|++||+.|++               ++.+|.+|.||||+|+..|+.+++++|+++|.+.. .
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gad---------------vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~-~  101 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGAD---------------INYANVDGLTALHQACIDDNVDMVKFLVENGANIN-Q  101 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCC---------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCC---------------CCccCCCCCcHHHHHHhcCCceeeeeecccccccc-c
Confidence            4467999999999999999999999987               67789999999999999999999999999998865 6


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHH
Q 009805          156 ANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSA  235 (525)
Q Consensus       156 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~  235 (525)
                      .+..+.+||+.|+..++.++++.|+++|+..+..+..+.+++++|+..+..+.++.++.............+..+.+   
T Consensus       102 ~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~---  178 (291)
T d1s70b_         102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML---  178 (291)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---
T ss_pred             ccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhcccccccccccccccccccccccc---
Confidence            67789999999999999999999999999999999999999999999999999999987654322211111111111   


Q ss_pred             HcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHH
Q 009805          236 YLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRL  315 (525)
Q Consensus       236 ~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~l  315 (525)
                          ......+....... ...+. .|.||||.|+..|+.++++.|++.+++ ++.+|..|+||||+|+..|+.+++++|
T Consensus       179 ----~~~~~~~~~~~~~~-~~~~~-~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lL  251 (291)
T d1s70b_         179 ----RDARQWLNSGHIND-VRHAK-SGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRIL  251 (291)
T ss_dssp             ----HHHHHHHHHTCCCC-CCCTT-TCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ----ccchhhhccccccc-ccccC-CCCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHH
Confidence                12222222222222 22233 688999999999999999999999988 688899999999999999999999999


Q ss_pred             hhCccccccccccCCCCChHHHHHHh
Q 009805          316 LKDPLYKSFIDEKNEMGNTPLHILAT  341 (525)
Q Consensus       316 l~~~~~~~~in~~d~~G~T~Lh~A~~  341 (525)
                      ++.   ++++|.+|..|+||||+|++
T Consensus       252 l~~---Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         252 VEN---LCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             HHT---TCCTTCCCTTSCCTTTSCCS
T ss_pred             HHC---CCCCCCcCCCCCCHHHHHHH
Confidence            985   45689999999999999975

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=2.3e-31  Score=252.05  Aligned_cols=237  Identities=21%  Similarity=0.187  Sum_probs=197.4

Q ss_pred             cCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHH
Q 009805          123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVN  202 (525)
Q Consensus       123 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  202 (525)
                      +.++.|+|+.|+..|+.++|++|+++|++++ ..|..|.||||+|+..|+.+++++|++++++....+..+.+||+.++.
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn-~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccc
Confidence            3456799999999999999999999999987 788999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHH
Q 009805          203 SYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTII  282 (525)
Q Consensus       203 ~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  282 (525)
                      .++.++++.|++.+.. ....|..+.+|+++|+..+..+.++.++............ .+..+.       .......+.
T Consensus       116 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~  186 (291)
T d1s70b_         116 CGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK-EEERIM-------LRDARQWLN  186 (291)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHH-HHHHHH-------HHHHHHHHH
T ss_pred             ccccchhhcccccCcc-cccccccCccccccccccccchhccccccccccccccccc-cccccc-------cccchhhhc
Confidence            9999999999999877 5778899999999999999999999998754332121111 111111       112222333


Q ss_pred             hhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHH
Q 009805          283 AHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQA  361 (525)
Q Consensus       283 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~  361 (525)
                       .........+..|.||||+|+..++.++++.|++.+   +++|.+|.+|+||||+|+..|...+ ..|++  .|+|++.
T Consensus       187 -~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g---~din~~~~~g~TpL~~A~~~g~~~iv~lLl~--~Gadv~~  260 (291)
T d1s70b_         187 -SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR---YDVNIKDYDGWTPLHAAAHWGKEEACRILVE--NLCDMEA  260 (291)
T ss_dssp             -HTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTC
T ss_pred             -ccccccccccCCCCChhhHHHHcCChhhhcccccce---ecccccccCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCC
Confidence             333335567889999999999999999999999854   5689999999999999999997766 77777  8999999


Q ss_pred             HhccCCChHHHHhh
Q 009805          362 VNKKKISVKHIELY  375 (525)
Q Consensus       362 ~n~~g~t~l~~a~~  375 (525)
                      +|+.|+||||+|.+
T Consensus       261 ~d~~G~TaL~~A~e  274 (291)
T d1s70b_         261 VNKVGQTAFDVADE  274 (291)
T ss_dssp             CCTTSCCTTTSCCS
T ss_pred             cCCCCCCHHHHHHH
Confidence            99999999999974

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.9e-30  Score=233.08  Aligned_cols=221  Identities=24%  Similarity=0.255  Sum_probs=155.1

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 009805           77 KGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSA  156 (525)
Q Consensus        77 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  156 (525)
                      +|+||||+||+.|+.++|+.|++.......           .++.+|.+|.||||+|+..|+.+++++|+++|++.+ ..
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~-----------~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-~~   69 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGR-----------ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-AL   69 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTC-----------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCCccCCCCCccceehhccccccccccccccccccc-cc
Confidence            578888888888888888887764321100           155677788888888888888888888888877765 55


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHhcCC----CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHH
Q 009805          157 NVNGETPLYMAAARGSKKMVAEILEKCSS----AAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLH  232 (525)
Q Consensus       157 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~  232 (525)
                      ...+.++++.|...++.++++.+......    .+.......++|+.+.........+.|.....+.....+..+.+||+
T Consensus        70 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  149 (228)
T d1k1aa_          70 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI  149 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred             ccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHH
Confidence            66777888888888888877777665432    23344556677777777777777777777766655566666777777


Q ss_pred             HHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHH
Q 009805          233 HSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKL  312 (525)
Q Consensus       233 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~  312 (525)
                      .|+..+..++++.+++.+... ...+. .|.||||+|+.+|+.+++++|+++|++ ++.+|.+|+||||+|+++++.+++
T Consensus       150 ~a~~~~~~~~~~~~~~~~~~~-~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~Gad-~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         150 HAVENNSLSMVQLLLQHGANV-NAQMY-SGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHHHhhhhhhhhhhhhhcccc-ccccc-cCcchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhCCCcccc
Confidence            777777777777777766654 33333 567777777777777777777777776 566777777777777777766555

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.2e-31  Score=238.02  Aligned_cols=197  Identities=24%  Similarity=0.244  Sum_probs=135.3

Q ss_pred             CCCchhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhh
Q 009805           33 NKHTVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCA  112 (525)
Q Consensus        33 ~g~t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  112 (525)
                      +|+||||+|+.+       |+.+++..|++.+...+..++.+|.+|+||||+|++.|+.+++++|++.+++         
T Consensus         1 dG~t~Lh~A~~~-------g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d---------   64 (221)
T d1iknd_           1 DGDSFLHLAIIH-------EEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD---------   64 (221)
T ss_dssp             CCCCTTHHHHHT-------TCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC---------
T ss_pred             CCChHHHHHHHc-------CCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccc---------
Confidence            477788888777       7766666655544445666777777777777777777777777777777766         


Q ss_pred             hhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCC-----CCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCC
Q 009805          113 KTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFP-----YSANVNGETPLYMAAARGSKKMVAEILEKCSSAA  187 (525)
Q Consensus       113 ~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  187 (525)
                            ++.+|..|.||||+++..|+.++++.|++.+....     ......|.||||.|+..++.+++++|++.+...+
T Consensus        65 ------~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~  138 (221)
T d1iknd_          65 ------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN  138 (221)
T ss_dssp             ------SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred             ------ccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccc
Confidence                  45567777777777777777777777777654422     1233456777777777777777777777776665


Q ss_pred             CCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCC
Q 009805          188 HDG-PNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGS  252 (525)
Q Consensus       188 ~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  252 (525)
                      ..+ .+|.||||+|++.|+.+++++|++.|++ ++.+|..|+||||+|+..++.++++.|++...+
T Consensus       139 ~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         139 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             cccccCCCCccccccccccHHHHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            543 4577777777777777777777777776 566777777777777777777777777765543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-30  Score=234.96  Aligned_cols=195  Identities=17%  Similarity=0.135  Sum_probs=168.6

Q ss_pred             CCChHhHHHHHcCCHH----HHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHH
Q 009805          125 EENTALHEAVQCGNLD----AVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAA  200 (525)
Q Consensus       125 ~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  200 (525)
                      +|.||||+|+..|+.+    +++++...+.+++ ..|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||.+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in-~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcc-cCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence            5999999999999964    5556666788876 6788999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhcCcC-----cccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCH
Q 009805          201 VNSYAADVVEKLLAKKRHL-----TRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHE  275 (525)
Q Consensus       201 ~~~~~~~~~~~Ll~~~~~~-----~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~  275 (525)
                      +..++.++++.|++.+...     .......|.||||.|+..++.+++++|+..+.......+. .|.||||+|+..|+.
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~G~T~L~~A~~~g~~  158 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC-NGRTALHLAVDLQNP  158 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT-TCCCHHHHHHHTTCH
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccccccccc-CCCCccccccccccH
Confidence            9999999999999875432     3344566899999999999999999999998887444444 799999999999999


Q ss_pred             HHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCcccc
Q 009805          276 SLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYK  322 (525)
Q Consensus       276 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~  322 (525)
                      +++++|++++++ ++.+|.+|+||||+|+..++.++++.|++.....
T Consensus       159 ~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         159 DLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             HHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             HHHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCcc
Confidence            999999999999 7889999999999999999999999999875544

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.6e-29  Score=226.63  Aligned_cols=216  Identities=23%  Similarity=0.207  Sum_probs=187.3

Q ss_pred             CCChHhHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHH
Q 009805          125 EENTALHEAVQCGNLDAVKILME----AGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAA  200 (525)
Q Consensus       125 ~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  200 (525)
                      +|+||||+|+..|+.++++.|++    .|.+++ ..|..|+||||+|+..|+.+++++|+++|++.+..+..|.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in-~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-ccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            69999999999999999998885    678876 6788999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhcCc---CcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHH
Q 009805          201 VNSYAADVVEKLLAKKRH---LTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESL  277 (525)
Q Consensus       201 ~~~~~~~~~~~Ll~~~~~---~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  277 (525)
                      ...++.++++.+......   ..+.......++|+.+.........+.|.....+....... .+.+||+.|+..+...+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK-SGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-TCCCHHHHHHHTTCHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcccccccccccc-chhhHHHHHHHhhhhhh
Confidence            999999999888776433   23445567789999999999999998888877765444443 78899999999999999


Q ss_pred             HHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchh
Q 009805          278 AGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSART  346 (525)
Q Consensus       278 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~  346 (525)
                      ++.+++.+.. .+.+|..|+||||+|+..|+.+++++|++.   ++++|.+|.+|+||||+|++.+...
T Consensus       160 ~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---Gad~n~~d~~G~TpL~~A~~~~~~d  224 (228)
T d1k1aa_         160 VQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRS---GADSSLKNCHNDTPLMVARSRRVID  224 (228)
T ss_dssp             HHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCTTTTCSSHHHHH
T ss_pred             hhhhhhhccc-cccccccCcchHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHhCCCcc
Confidence            9999999887 677899999999999999999999999985   4568999999999999999876543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1.7e-28  Score=220.12  Aligned_cols=207  Identities=22%  Similarity=0.230  Sum_probs=183.8

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 009805          139 LDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRH  218 (525)
Q Consensus       139 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  218 (525)
                      .|+|++|+++|++++...|.+|.||||+||..|+.+++++|++.|++++.++..+.++++.++..++.............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            48999999999998755788999999999999999999999999999999999999999999999998888777777666


Q ss_pred             CcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCc
Q 009805          219 LTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWN  298 (525)
Q Consensus       219 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  298 (525)
                      ........+.++.+.+.........+.|.+.+.+. ...+. .|.|||+.++..+..++++.+++.+.+ ++..|..|+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~-~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~T  158 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADN-SGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDET  158 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccc-cccCC-CCCCcchhhcccCcceeeeeecccccc-cccccccccc
Confidence            56667778889999999999999999999988876 34444 689999999999999999999999988 6888999999


Q ss_pred             hhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhHHHHH
Q 009805          299 VLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTCNEIV  351 (525)
Q Consensus       299 ~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~~~ll  351 (525)
                      |||+|+..|+.++++.|++.   +++++.+|..|+||||+|++.|...+..+|
T Consensus       159 pL~~A~~~g~~~~v~~Ll~~---gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         159 PLFLAAREGSYEASKALLDN---FANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccchhccccHHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999984   456899999999999999999988776655

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=5.7e-28  Score=216.70  Aligned_cols=205  Identities=22%  Similarity=0.296  Sum_probs=138.5

Q ss_pred             hhHHHHHHHhhhcCChhHhhhhhhhHHHhcC-ccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHH
Q 009805           91 PAVVKVLIEFAKKQPTAMKCCAKTAWQMLGL-TNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAA  169 (525)
Q Consensus        91 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  169 (525)
                      .|+|++|+++|++               ++. .|.+|.||||+||..|+.+++++|++.|++++ ..+..+.++++.++.
T Consensus         2 ~~~v~~Ll~~g~d---------------in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n-~~~~~~~~~~~~~~~   65 (209)
T d1ot8a_           2 AQVISDLLAQGAE---------------LNATMDKTGETSLHLAARFARADAAKRLLDAGADAN-SQDNTGRTPLHAAVA   65 (209)
T ss_dssp             HHHHHHHHHHHHH---------------HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHCCCC---------------cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccc-ccccccccccccccc
Confidence            3667777777766               333 36667777777777777777777777777655 556667777777777


Q ss_pred             cCCHHHHHHHHHhcCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 009805          170 RGSKKMVAEILEKCSS-AAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE  248 (525)
Q Consensus       170 ~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  248 (525)
                      .++............. .......|.++.+.+.........+.|...+.+ .+.++..|.|||++++..+..++++.+++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~  144 (209)
T d1ot8a_          66 ADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWAAAVNNTEAVNILLM  144 (209)
T ss_dssp             TTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhccc-ccccCCCCCCcchhhcccCcceeeeeecc
Confidence            7776665555544422 223444566677777777777777777766665 45666667777777777777777777777


Q ss_pred             cCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHH
Q 009805          249 FDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRL  315 (525)
Q Consensus       249 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~l  315 (525)
                      .+.+. +..+. .|.||||+|+..|+.+++++|+++|++ ++..|..|+||||+|+++|+.+++++|
T Consensus       145 ~~~~~-~~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         145 HHANR-DAQDD-KDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccc-ccccc-ccccccchhccccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            76665 33344 577777777777777777777777777 566777777777777777777777654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=8.1e-30  Score=246.49  Aligned_cols=132  Identities=19%  Similarity=0.177  Sum_probs=92.5

Q ss_pred             cccCCCCCcHHHHHHHcCChhHHHH---HHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhc
Q 009805           72 IQTNAKGDSPLHAAAKCGRPAVVKV---LIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEA  148 (525)
Q Consensus        72 ~~~~~~g~tpLh~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  148 (525)
                      +.++..|.||||+||++|+.+++++   |++.+++               ++.+|.+|.||||+|++.|+.++|++|+++
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~---------------in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~  148 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI---------------VKVIQAENYQAFRLAAENGHLHVLNRLCEL  148 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS---------------CC--CHHHHHHHHHHHHTTCHHHHHHHHHS
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc---------------ccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            4566778888888888888766655   5666665               556777788888888888888888888888


Q ss_pred             CCCCCCC-CCCCCchHHHHHHHcCCHHHHHHHHHhcCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 009805          149 GPNFPYS-ANVNGETPLYMAAARGSKKMVAEILEKCSSAA---HDGPNGKTALHAAVNSYAADVVEKLLAKKRH  218 (525)
Q Consensus       149 ~~~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  218 (525)
                      |++++.. .+..|.||||+|+..|+.+++++|++.|++..   ..+.++.||++.|+.+|+.+++++|++.+++
T Consensus       149 g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         149 APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             CTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             CCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC
Confidence            8776522 23357788888888888888888888775532   2334456677777778888888888877655

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=6.4e-30  Score=247.21  Aligned_cols=268  Identities=12%  Similarity=0.069  Sum_probs=191.9

Q ss_pred             cHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHH---HHhcCCCCCCCC
Q 009805           80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKI---LMEAGPNFPYSA  156 (525)
Q Consensus        80 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~---Ll~~~~~~~~~~  156 (525)
                      ++++.+...+..++.+.+...+.+....    .......++.++..|.||||+|+.+|+.+++++   |++.|++++ ..
T Consensus        48 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in-~~  122 (346)
T d2ajaa1          48 IHIFLPGTKNMEQVRQLLCLYYAHYNRN----AKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VI  122 (346)
T ss_dssp             HHHCCCCSSHHHHHHHHHHHHHHHTTTT----CTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---
T ss_pred             HHHHHHhhccHHHHHHHHHHcchhhccc----hhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccc-cc
Confidence            3444444455667777777776543221    112233466788999999999999999877665   788899887 67


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHhcCcCc--ccCCCCCCcHHH
Q 009805          157 NVNGETPLYMAAARGSKKMVAEILEKCSSAAHDG--PNGKTALHAAVNSYAADVVEKLLAKKRHLT--RERDDCGWTPLH  232 (525)
Q Consensus       157 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~--~~~d~~g~tpL~  232 (525)
                      +..|.||||+||..|+.++|++|+++|++++..+  .+|.||||+|+.+|+.+++++|++.++...  +..+.++.||++
T Consensus       123 ~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~  202 (346)
T d2ajaa1         123 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW  202 (346)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhh
Confidence            8899999999999999999999999999988765  469999999999999999999999987632  334456778888


Q ss_pred             HHHHcCChhHHHHHhhcCCCcchhcc-----cCCCCcHHHHHHhcCCHHHHHHHHhhCCCc-ccccc-------CCCCch
Q 009805          233 HSAYLGLKDITALLLEFDGSSALILD-----KDRKMTALLMAASQGHESLAGTIIAHYPEC-YDLVD-------NGGWNV  299 (525)
Q Consensus       233 ~A~~~g~~~~v~~Ll~~~~~~~~~~~-----~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~-~~~~d-------~~g~t~  299 (525)
                      .|+..|+.+++++|++.|++......     ...+.++++.++..+..+....+....++. .+..+       ..+.++
T Consensus       203 ~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  282 (346)
T d2ajaa1         203 AAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRN  282 (346)
T ss_dssp             HHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHH
T ss_pred             HHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhH
Confidence            99999999999999998875422111     113345666666555555444443333221 11111       123578


Q ss_pred             hHHHHhcCCHHHHHHHhhCcccc--ccccccCCCCChHHHHHHhcCchhHHHHHH
Q 009805          300 LHFLMVSLHESKLKRLLKDPLYK--SFIDEKNEMGNTPLHILATLSARTCNEIVR  352 (525)
Q Consensus       300 Lh~A~~~~~~~~~~~ll~~~~~~--~~in~~d~~G~T~Lh~A~~~~~~~~~~ll~  352 (525)
                      ++.|+..++.+++++|++.....  ...+..+.+|+||||+|++.|+..+..+|.
T Consensus       283 l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL  337 (346)
T d2ajaa1         283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL  337 (346)
T ss_dssp             HHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHT
T ss_pred             HHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHh
Confidence            89999999999999999865544  344566778999999999999887755544

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=197.78  Aligned_cols=154  Identities=21%  Similarity=0.198  Sum_probs=97.0

Q ss_pred             cHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q 009805           80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN  159 (525)
Q Consensus        80 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  159 (525)
                      +|||+||..|+.++|+.|++.|++               ++.+|.+|.||||+|+ .|+.+++++|+++|+++. ..+..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d---------------~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~-~~~~~   65 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN---------------VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD-LKDRT   65 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC---------------TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC---------------cCccCCcccccccccc-cccccccccccccccccc-ccccc
Confidence            566666666666666666666655               4455666666666554 556666666666666654 45556


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCC
Q 009805          160 GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGL  239 (525)
Q Consensus       160 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~  239 (525)
                      +.+|++.++..++.+.++.|++.+.+++..+..|.+|+|+|+..++.+++++|+++++...+.+|..|+||||+|+..++
T Consensus        66 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~  145 (156)
T d1ihba_          66 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  145 (156)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCC
Confidence            66666666666666666666666666666666666666666666666666666666654455666666666666666666


Q ss_pred             hhHHHHHhhcC
Q 009805          240 KDITALLLEFD  250 (525)
Q Consensus       240 ~~~v~~Ll~~~  250 (525)
                      .+++++|+++|
T Consensus       146 ~~iv~~Ll~~G  156 (156)
T d1ihba_         146 NEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhcC
Confidence            66666666554

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.1e-26  Score=193.74  Aligned_cols=154  Identities=21%  Similarity=0.250  Sum_probs=119.1

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHH
Q 009805          128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAAD  207 (525)
Q Consensus       128 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  207 (525)
                      +|||+|+..|+.++|+.|+++|++++ ..|..|.||||+|+ .|+.+++++|++++++++..+..|.++++.++..++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n-~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            68888888888888888888888875 67778888888775 67888888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhC
Q 009805          208 VVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHY  285 (525)
Q Consensus       208 ~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  285 (525)
                      .++.|++.+.+ .+..+..|.+|||+|+..++.++++.|+++++......+. .|.||||+|++.|+.+++++|+++|
T Consensus        81 ~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~-~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          81 TLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH-KGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccc-ccccccccccccccccccccccccccccccccccccccCC-CCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            88888887776 4666777777777777777777777777777644344444 5777777777777777777777654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-25  Score=189.34  Aligned_cols=152  Identities=23%  Similarity=0.254  Sum_probs=110.6

Q ss_pred             cHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q 009805           80 SPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVN  159 (525)
Q Consensus        80 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  159 (525)
                      +.||.||..|+.++|+.|++.+...              ++.+|..|+||||+|+ .|+.+++++|++++.+++ ..+..
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~--------------~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~-~~~~~   67 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVH--------------PDALNRFGKTALQVMM-FGSTAIALELLKQGASPN-VQDTS   67 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCC--------------TTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCC--------------CCccCCCCCccccccc-cccccccccccccccccc-ccccc
Confidence            3577777778888887777754321              4556777778877775 467777777777777765 45567


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCC
Q 009805          160 GETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGL  239 (525)
Q Consensus       160 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~  239 (525)
                      |.+|++.++..++.++++++++++++++.+|..|.||||+|++.|+.+++++|+ .+++ .+.+|.+|+||||+|+..|+
T Consensus        68 ~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~-~~~~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESD-LHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC-TTCCCTTSCCHHHHHHHSCC
T ss_pred             cccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc-cccc-ccccCCCCCCHHHHHHHcCC
Confidence            777788777777777777777777777777777777777777777777777666 4555 46677777777777777777


Q ss_pred             hhHHHHHhhc
Q 009805          240 KDITALLLEF  249 (525)
Q Consensus       240 ~~~v~~Ll~~  249 (525)
                      .+++++|+++
T Consensus       146 ~~iv~~Ll~h  155 (156)
T d1bd8a_         146 QDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhh
Confidence            7777777764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.7e-25  Score=187.61  Aligned_cols=150  Identities=25%  Similarity=0.307  Sum_probs=118.7

Q ss_pred             CcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCC
Q 009805           79 DSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANV  158 (525)
Q Consensus        79 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  158 (525)
                      .||||.||+.|+.++|++||+.+++               ++ .|..|.||||+|+..++.++++.++....... ..+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~---------------~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~~~~   65 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAP---------------FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTK   65 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC---------------CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCC---------------cc-cccCCCcccccccccccccccccccccccccc-cccc
Confidence            4788888888888888888888765               22 47778888888888888888888887766654 4556


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcC
Q 009805          159 NGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLG  238 (525)
Q Consensus       159 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g  238 (525)
                      .+.++++.++...+.++++++++++++.+.++.+|.||||+|+..|+.+++++|++.+++ ++.+|.+|.||||+|+..|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g  144 (153)
T d1awcb_          66 VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             ccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccC-CcccCCCCCCHHHHHHHcC
Confidence            677888888888888888888888888888888888888888888888888888888877 5677888888888888888


Q ss_pred             ChhHHHHH
Q 009805          239 LKDITALL  246 (525)
Q Consensus       239 ~~~~v~~L  246 (525)
                      +.+++++|
T Consensus       145 ~~eiv~lL  152 (153)
T d1awcb_         145 NEDLAEIL  152 (153)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHhC
Confidence            88887765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.4e-25  Score=186.70  Aligned_cols=152  Identities=22%  Similarity=0.281  Sum_probs=139.6

Q ss_pred             chhhhhhhcccccccCCchhhHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhh
Q 009805           36 TVLHVNIARQSLKNKEGESVSTKFVEQILEICPSLLIQTNAKGDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTA  115 (525)
Q Consensus        36 t~Lh~A~~~~~~~~~~g~~~~~~~ll~~~~~~~~~l~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (525)
                      +.||.||..       |+.+++++|++   ..+.+++.+|..|.||||+|+ .|+.+++++|++.+.+            
T Consensus         4 ~~L~~Aa~~-------g~~~~vk~lL~---~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~------------   60 (156)
T d1bd8a_           4 DRLSGAAAR-------GDVQEVRRLLH---RELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS------------   60 (156)
T ss_dssp             HHHHHHHHH-------TCHHHHHHHHH---TTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC------------
T ss_pred             HHHHHHHHc-------CCHHHHHHHHH---hCCCCCCccCCCCCccccccc-cccccccccccccccc------------
Confidence            459999999       99999999954   567788999999999999987 5899999999999877            


Q ss_pred             HHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCc
Q 009805          116 WQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKT  195 (525)
Q Consensus       116 ~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t  195 (525)
                         ++..+..|.+|++.++..++.++++.++++|++++ ..|..|.||||+|+..|+.+++++|+ .|++++.+|.+|+|
T Consensus        61 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n-~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~T  135 (156)
T d1bd8a_          61 ---PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLT  135 (156)
T ss_dssp             ---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCC
T ss_pred             ---ccccccccccccccccccccccccccccccccccc-cccCCCCeeecccccccccccccccc-ccccccccCCCCCC
Confidence               56788899999999999999999999999999987 57889999999999999999999887 68999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHh
Q 009805          196 ALHAAVNSYAADVVEKLLAK  215 (525)
Q Consensus       196 ~L~~A~~~~~~~~~~~Ll~~  215 (525)
                      |||+|++.|+.+++++|+++
T Consensus       136 pL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         136 PLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.6e-24  Score=183.59  Aligned_cols=149  Identities=28%  Similarity=0.344  Sum_probs=89.3

Q ss_pred             ChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCH
Q 009805          127 NTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAA  206 (525)
Q Consensus       127 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~  206 (525)
                      .||||.|++.|+.++|++|+++|++.+  .|..|+||||+|+..++.++++.++.........+..+.++++.++...+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            366666666666666666666666543  456666666666666666666666666655555555566666666666666


Q ss_pred             HHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHH
Q 009805          207 DVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGT  280 (525)
Q Consensus       207 ~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  280 (525)
                      +++++++..+.+ .+.+|.+|+||||+|+..|+.+++++|+++|+++ +..+. .|.||||+|+.+|+.+++++
T Consensus        81 ~~~~~l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~-~g~Tpl~~A~~~g~~eiv~l  151 (153)
T d1awcb_          81 NIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSK-FCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHH
T ss_pred             eeeecccccCCc-cccccccCchHHHhhhhcchhheeeeccccccCC-cccCC-CCCCHHHHHHHcCCHHHHHh
Confidence            666666666555 3455555556666555555555555555555544 23333 45555555555555555543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.3e-25  Score=209.22  Aligned_cols=202  Identities=19%  Similarity=0.114  Sum_probs=119.2

Q ss_pred             cCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCH---HHHHHHHHhcCcCcccCC
Q 009805          148 AGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAA---DVVEKLLAKKRHLTRERD  224 (525)
Q Consensus       148 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~---~~~~~Ll~~~~~~~~~~d  224 (525)
                      .+.+++...|..|+||||+||..|+.++|++|+++|++++.+|..|+||||.|+..++.   +.++.+++........+|
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d  174 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  174 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcc
Confidence            34455544478899999999999999999999999999999999999999999876542   122233332222245677


Q ss_pred             CCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCchhHHHH
Q 009805          225 DCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAASQGHESLAGTIIAHYPECYDLVDNGGWNVLHFLM  304 (525)
Q Consensus       225 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  304 (525)
                      ..|+||||+++..+..+..                       ..++++....++.++++.+..........+.++++.+.
T Consensus       175 ~~g~t~lh~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  231 (301)
T d1sw6a_         175 SMNRTILHHIIITSGMTGC-----------------------SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN  231 (301)
T ss_dssp             TTCCCHHHHHHHHHTSTTC-----------------------HHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred             cccCCHHHHHHHHhCcccc-----------------------HHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHH
Confidence            8888888888754432110                       11111111234455555555544555556666666665


Q ss_pred             hcCCHHHHHHHhhCccccccccccCCCCChHHHHHHhcCchhH-HHHHHHhCCCChHHHhccCCChHHHHh
Q 009805          305 VSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILATLSARTC-NEIVRQIGKGDTQAVNKKKISVKHIEL  374 (525)
Q Consensus       305 ~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~~~~~~~~-~~ll~~~~~~d~~~~n~~g~t~l~~a~  374 (525)
                      ..........+.........+|.+|.+|+||||+|++.|...+ ..|++  .|+|++++|+.|+||+|+|.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~--~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         232 GERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD--YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             ----CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHH--TTCCTTCCCTTSCCGGGGTC
T ss_pred             hcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHcC
Confidence            5555444333221111113367888888888888888876655 66666  78888888888888888875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=8.7e-25  Score=207.10  Aligned_cols=181  Identities=19%  Similarity=0.151  Sum_probs=112.3

Q ss_pred             cCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCH-------HHHHHHHHhcCCCCCCCCCCCc
Q 009805          123 NEEENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSK-------KMVAEILEKCSSAAHDGPNGKT  195 (525)
Q Consensus       123 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~-------~~v~~Ll~~~~~~~~~~~~g~t  195 (525)
                      |.+|+||||+|+..|+.++|++|+++|++++ ..|..|+||||.|+..++.       ++++++.   ..+...|..|+|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t  179 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRT  179 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-cCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCC
Confidence            8899999999999999999999999999987 7888999999999987752       3444443   345567888999


Q ss_pred             HHHHHHHcCC----HHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCcchhcccCCCCcHHHHHHh
Q 009805          196 ALHAAVNSYA----ADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSSALILDKDRKMTALLMAAS  271 (525)
Q Consensus       196 ~L~~A~~~~~----~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~  271 (525)
                      |||+++..+.    ...+++.+                          ..+++++.+.+......... .+.++++.+..
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~  232 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYL--------------------------DILMGWIVKKQNRPIQSGTN-EKESKPNDKNG  232 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHH--------------------------HHHHHHHHHGGGCCEEEC--------------
T ss_pred             HHHHHHHHhCccccHHHHHHHH--------------------------HHHHHHHHhcCCcchhcccc-cccchhHHHHh
Confidence            9999886433    22222211                          11233333333322222221 23333333332


Q ss_pred             cCCHHHH-----HHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHhhCccccccccccCCCCChHHHHHH
Q 009805          272 QGHESLA-----GTIIAHYPECYDLVDNGGWNVLHFLMVSLHESKLKRLLKDPLYKSFIDEKNEMGNTPLHILA  340 (525)
Q Consensus       272 ~g~~~~v-----~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ll~~~~~~~~in~~d~~G~T~Lh~A~  340 (525)
                      ......+     ..++...   ++.+|.+|+||||+|++.|+.+++++|++.   +++++.+|+.|.||||+|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~---in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~---GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         233 ERKDSILENLDLKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             ---CHHHHHCSHHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCCCTTSCCGGGGTC
T ss_pred             cchHHHHHHHhhHHHHhcC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHcC
Confidence            2222211     2222222   456677788888888888888888888873   4557788888888888775

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.6e-24  Score=171.90  Aligned_cols=121  Identities=18%  Similarity=0.149  Sum_probs=84.5

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 009805           78 GDSPLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQCGNLDAVKILMEAGPNFPYSAN  157 (525)
Q Consensus        78 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  157 (525)
                      +.++||.|++.|+.++|++|+++|++               ++.+|.+|.||||.|+ .|+.+++++|+++|++++...+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad---------------~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~   66 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN---------------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP   66 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC---------------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc---------------cccccccccccccccc-cccccccccccccccccccccc
Confidence            45677777777777777777777765               4556777777777553 5777777777777777663333


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 009805          158 VNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLA  214 (525)
Q Consensus       158 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  214 (525)
                      ..+.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+++|+.+++++|+.
T Consensus        67 ~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          67 ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            334467777777777777777777777777777777777777777777777777653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.9e-23  Score=167.96  Aligned_cols=120  Identities=23%  Similarity=0.307  Sum_probs=105.4

Q ss_pred             CChHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCC-cHHHHHHHcC
Q 009805          126 ENTALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGK-TALHAAVNSY  204 (525)
Q Consensus       126 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~~  204 (525)
                      +.++||+|++.|+.++|++|+++|++++ ..+..|.||||+|+ .|+.+++++|+++|++++.++..+. ||||+|++.|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n-~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccc-cccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            5688999999999999999999998876 67888999998764 6899999999999999998888776 5999999999


Q ss_pred             CHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhh
Q 009805          205 AADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLE  248 (525)
Q Consensus       205 ~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  248 (525)
                      +.+++++|++.+++ .+.+|..|+||||+|+..|+.+++++|++
T Consensus        81 ~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999888 57888899999999999999999998875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=4.7e-24  Score=171.48  Aligned_cols=105  Identities=25%  Similarity=0.263  Sum_probs=53.5

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHH
Q 009805          128 TALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAAD  207 (525)
Q Consensus       128 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  207 (525)
                      |||++|++.|+.++|++|+++|++++ ..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n-~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCC-CCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccc-cccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            45555555555555555555554443 34444555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhcCcCcccCCCCCCcHHHHH
Q 009805          208 VVEKLLAKKRHLTRERDDCGWTPLHHS  234 (525)
Q Consensus       208 ~~~~Ll~~~~~~~~~~d~~g~tpL~~A  234 (525)
                      ++++|+++|++ ++.+|.+|.||||+|
T Consensus        83 ~v~~Ll~~Gad-~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          83 CVKLLLSKGAD-KTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHTTCCC-SSSSSSSTCCCCCTC
T ss_pred             hhhhhhccccc-ceeeCCCCCCHHHHH
Confidence            55555555544 344455555555544

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.2e-23  Score=167.45  Aligned_cols=108  Identities=22%  Similarity=0.257  Sum_probs=101.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCCh
Q 009805          161 ETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLK  240 (525)
Q Consensus       161 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~  240 (525)
                      .|||++|++.|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.+++ .+.+|..|+||||+|+..|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccce-eeecccccccchhhhhhcCch
Confidence            5899999999999999999999999999999999999999999999999999999998 688999999999999999999


Q ss_pred             hHHHHHhhcCCCcchhcccCCCCcHHHHHHh
Q 009805          241 DITALLLEFDGSSALILDKDRKMTALLMAAS  271 (525)
Q Consensus       241 ~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~  271 (525)
                      +++++|+++|+++ +..+. .|.||||+|..
T Consensus        82 ~~v~~Ll~~Gad~-~~~d~-~G~t~l~~a~~  110 (118)
T d1myoa_          82 SCVKLLLSKGADK-TVKGP-DGLTALEATDN  110 (118)
T ss_dssp             HHHHHHHTTCCCS-SSSSS-STCCCCCTCSS
T ss_pred             hhhhhhhcccccc-eeeCC-CCCCHHHHHhH
Confidence            9999999999987 55555 79999999843

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.3e-22  Score=164.49  Aligned_cols=119  Identities=18%  Similarity=0.144  Sum_probs=57.0

Q ss_pred             HhHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHH
Q 009805          129 ALHEAVQCGNLDAVKILMEAGPNFPYSANVNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADV  208 (525)
Q Consensus       129 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~  208 (525)
                      +|+.|+..|+.++|++|+++|++++ .+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.+|+.++
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~n-~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcc-ccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            4445555555555555555554443 344445555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHhcCcCcccCCCCCCcHHHHH--HHcCChhHHHHHhh
Q 009805          209 VEKLLAKKRHLTRERDDCGWTPLHHS--AYLGLKDITALLLE  248 (525)
Q Consensus       209 ~~~Ll~~~~~~~~~~d~~g~tpL~~A--~~~g~~~~v~~Ll~  248 (525)
                      +++|+++|+++....+..+.||++++  +..|+.+++++|++
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            55555554442212222344444333  23444555555544

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1e-21  Score=160.57  Aligned_cols=122  Identities=21%  Similarity=0.243  Sum_probs=110.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChh
Q 009805          162 TPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKD  241 (525)
Q Consensus       162 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~  241 (525)
                      ++|+.|+..|+.+++++|+++|++++.+|.+|+||||+|+..++.+++++|++.+.+ .+.+|.+|+||||+|+..|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccc-cccccccCcccccccchhhHHH
Confidence            689999999999999999999999999999999999999999999999999999988 6889999999999999999999


Q ss_pred             HHHHHhhcCCCcchhcccCCCCcHHHHH--HhcCCHHHHHHHHhhC
Q 009805          242 ITALLLEFDGSSALILDKDRKMTALLMA--ASQGHESLAGTIIAHY  285 (525)
Q Consensus       242 ~v~~Ll~~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll~~~  285 (525)
                      ++++|+++|+++... +...+.||++++  +.+|+.+++++|+...
T Consensus        82 ~v~~Ll~~ga~v~~~-~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          82 VCKFLVESGAAVFAM-TYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHTTCCTTCC-CSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccc-cCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999987433 333678887665  5789999999999764

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=2.9e-20  Score=155.84  Aligned_cols=132  Identities=20%  Similarity=0.133  Sum_probs=111.7

Q ss_pred             HHHHHHHcCChhHHHHHHHhhhcCChhHhhhhhhhHHHhcCccCCCChHhHHHHHc---CCHHHHHHHHhcCCCCCCCCC
Q 009805           81 PLHAAAKCGRPAVVKVLIEFAKKQPTAMKCCAKTAWQMLGLTNEEENTALHEAVQC---GNLDAVKILMEAGPNFPYSAN  157 (525)
Q Consensus        81 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~  157 (525)
                      .|+.|++.++...+..++..+.+.....         .....+..|+||||+|++.   |+.+++++|+++|++++ ..|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~---------~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin-~~d   78 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKI---------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQT   78 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBC---------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCC---------CcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChh-hhh
Confidence            4567889999999999998876632210         1233477899999999975   67899999999999986 688


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCccc
Q 009805          158 VNGETPLYMAAARGSKKMVAEILEKCSSAAHDGPNGKTALHAAVNSYAADVVEKLLAKKRHLTRE  222 (525)
Q Consensus       158 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  222 (525)
                      ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|++.|+.+++++|++.+....+.
T Consensus        79 ~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~~  143 (154)
T d1dcqa1          79 GKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS  143 (154)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCS
T ss_pred             hhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCc
Confidence            89999999999999999999999999999999999999999999999999999999987664443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=4e-20  Score=154.93  Aligned_cols=125  Identities=22%  Similarity=0.229  Sum_probs=109.0

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcCCCCCCC-----CCCCCchHHHHHHHc---CCHHHHHHHHHhcCCCCCCCCCCCcHHHH
Q 009805          128 TALHEAVQCGNLDAVKILMEAGPNFPYS-----ANVNGETPLYMAAAR---GSKKMVAEILEKCSSAAHDGPNGKTALHA  199 (525)
Q Consensus       128 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~  199 (525)
                      ..|+.|++.+++..+..++..|.++...     .+..|+||||+|+..   |+.+++++|+++|++++.+|..|+||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            3466889999999999999998876532     256789999999974   67899999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhcCcCcccCCCCCCcHHHHHHHcCChhHHHHHhhcCCCc
Q 009805          200 AVNSYAADVVEKLLAKKRHLTRERDDCGWTPLHHSAYLGLKDITALLLEFDGSS  253 (525)
Q Consensus       200 A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  253 (525)
                      |+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++.+...
T Consensus        88 A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            9999999999999999998 5888999999999999999999999999866543