Citrus Sinensis ID: 009814
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 524 | 2.2.26 [Sep-21-2011] | |||||||
| Q54V77 | 569 | CTP synthase OS=Dictyoste | yes | no | 0.969 | 0.892 | 0.594 | 1e-180 | |
| Q6PEI7 | 591 | CTP synthase 1 OS=Danio r | yes | no | 0.973 | 0.862 | 0.585 | 1e-177 | |
| P70698 | 591 | CTP synthase 1 OS=Mus mus | yes | no | 0.973 | 0.862 | 0.592 | 1e-177 | |
| Q7ZXP9 | 591 | CTP synthase 1-B OS=Xenop | N/A | no | 0.973 | 0.862 | 0.587 | 1e-177 | |
| Q1RMS2 | 586 | CTP synthase 2 OS=Bos tau | no | no | 0.973 | 0.870 | 0.581 | 1e-176 | |
| Q5XHA8 | 591 | CTP synthase 1-A OS=Xenop | N/A | no | 0.973 | 0.862 | 0.590 | 1e-176 | |
| P17812 | 591 | CTP synthase 1 OS=Homo sa | yes | no | 0.971 | 0.861 | 0.589 | 1e-176 | |
| Q6GME1 | 578 | CTP synthase 2 OS=Xenopus | N/A | no | 0.967 | 0.877 | 0.579 | 1e-176 | |
| Q9NRF8 | 586 | CTP synthase 2 OS=Homo sa | no | no | 0.973 | 0.870 | 0.579 | 1e-174 | |
| Q6FUD0 | 578 | CTP synthase OS=Candida g | yes | no | 0.971 | 0.880 | 0.565 | 1e-172 |
| >sp|Q54V77|PYRG_DICDI CTP synthase OS=Dictyostelium discoideum GN=ctps PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 630 bits (1626), Expect = e-180, Method: Compositional matrix adjust.
Identities = 314/528 (59%), Positives = 388/528 (73%), Gaps = 20/528 (3%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY++VTGGV+SG+GKG+ ASS ++LK+ GLRVT IKIDPYLN DAGTMSPFEHGEVFV
Sbjct: 1 MKYIVVTGGVLSGIGKGIIASSTAMILKSMGLRVTSIKIDPYLNIDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+D+ L +DNNITTGKIY VI+KERKG YLGKTVQVVPHIT+E
Sbjct: 61 LDDGGEVDLDLGNYERFLDVNLGKDNNITTGKIYNLVIEKERKGQYLGKTVQVVPHITEE 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIERVA +PVDG +G DVCVIELGGT+GDIESMPF EAL QF +RVG NFCL+HV
Sbjct: 121 IQNWIERVAHLPVDGDKGTPDVCVIELGGTVGDIESMPFTEALRQFQFRVGVENFCLMHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVL VVGEQKTKP+Q S+R LR GL+P+ CRST L + K K+S FCHV N
Sbjct: 181 SLVPVLGVVGEQKTKPSQQSIRELRSLGLSPDFCLCRSTQPLTEETKKKISLFCHVAPDN 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQ----------GTTKEPLLKEWTSRAEI 290
+I ++DV NI+ +P+LL Q + + L L + + W A+
Sbjct: 241 VIGVHDVSNIYRVPILLNQQNLPNLVLRRLQLNPKVDLSKTSPSESTPYWMASWKGLADR 300
Query: 291 CDGLH----EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE 346
D + P+RIAMVGKYTGL+DAYLS++KAL HAS+ + +K+VIDW+ A +LE T+
Sbjct: 301 MDKITNESLNPIRIAMVGKYTGLTDAYLSVIKALDHASMAIERKMVIDWVEASNLE--TQ 358
Query: 347 KENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVI 406
+ YK +W++L+GA GILVPGGFG+RG++G IL A YAR P+LGICLG+Q+AVI
Sbjct: 359 NSSTAEYKKSWEMLRGAHGILVPGGFGDRGIEGMILTANYARTSGKPFLGICLGLQIAVI 418
Query: 407 EFARSVLNLRDANSTEFDPN-TKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAK 465
E+AR+V+ +ANS EF + + V+FMPE SKTHMGGTMRLGSR T F D K +K
Sbjct: 419 EYARNVMGWENANSEEFSASGSGKNVVVFMPEVSKTHMGGTMRLGSRDTIFTDVDNKISK 478
Query: 466 LYGNRTF---IDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
LY ++ERHRHRYEVNP+++ + GL F GKD T RME+
Sbjct: 479 LYNVDKVGQAVEERHRHRYEVNPEVVDEIHAKGLHFVGKDTTGVRMEI 526
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Dictyostelium discoideum (taxid: 44689) EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 2 |
| >sp|Q6PEI7|PYRG1_DANRE CTP synthase 1 OS=Danio rerio GN=ctps1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 621 bits (1602), Expect = e-177, Method: Compositional matrix adjust.
Identities = 299/511 (58%), Positives = 382/511 (74%), Gaps = 1/511 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKG+ ASS+G +LK+CGL VT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTAIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DI+LT+DNN+TTGKIYQSVI+KER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQSVINKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ R A IPVD + VCVIELGGT+GDIESMPF+EA QF ++V NFC IHV
Sbjct: 121 IQEWVMRQAKIPVDDDDVEPQVCVIELGGTVGDIESMPFVEAFRQFQFKVKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CR + LD++VK K+S FCHV +
Sbjct: 181 SLVPQPSATGEQKTKPTQNSVRELRGLGLSPDLIMCRCSTPLDNSVKEKISMFCHVEPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTK-EPLLKEWTSRAEICDGLHEPVR 299
+I ++DV +I+ +PLLL DQ + LNL + +L +W ++ D L E
Sbjct: 241 VICVHDVSSIYRVPLLLEDQGVVGYFCRRLNLPIENRPRKMLAKWKEMSDRSDRLLEQCS 300
Query: 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359
IA+VGKYT SD+Y S++KAL H+++ + KL + ++ + DLE + +E P Y AW+
Sbjct: 301 IALVGKYTKFSDSYASVIKALEHSALAISHKLEVKYVDSADLEPSMLQEEPVKYHEAWQK 360
Query: 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 419
L +DGILVPGGFG RG +GKI A +AR+ + P+LG+CLGMQ+AV EFAR++L+ DAN
Sbjct: 361 LCSSDGILVPGGFGVRGTEGKIQAINWARKQKKPFLGVCLGMQLAVCEFARNMLDWTDAN 420
Query: 420 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479
STEFDP TK+P VI MPE + MGGTMRLG RRT F+ K KLYG+ +++ERHRH
Sbjct: 421 STEFDPETKHPVVIDMPEHNPGQMGGTMRLGKRRTIFKNKSSILRKLYGDVDYVEERHRH 480
Query: 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
R+EVNP++ E G F G+D +RMEV
Sbjct: 481 RFEVNPELKHHFEEKGFRFVGQDVEGERMEV 511
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Danio rerio (taxid: 7955) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|P70698|PYRG1_MOUSE CTP synthase 1 OS=Mus musculus GN=Ctps1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 620 bits (1600), Expect = e-177, Method: Compositional matrix adjust.
Identities = 303/511 (59%), Positives = 382/511 (74%), Gaps = 1/511 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKGV ASS+G +LK+CGL VT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGVIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DI+LT+DNN+TTGKIYQ VI+KERKGDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ R A+IPVD VCVIELGGT+GDIESMPFIEA QF ++V NFC IHV
Sbjct: 121 IQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CR + LD +VK K+S FCHV +
Sbjct: 181 SLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQ-GTTKEPLLKEWTSRAEICDGLHEPVR 299
+I ++DV +I+ +PLLL +Q + + L+L +L +W A+ D L E
Sbjct: 241 VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLPIERQSRKMLMKWKEMADRYDRLLETCS 300
Query: 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359
IA+VGKYT SD+Y S++KAL H+++ + KL I +I + DLE +T +E P Y AW+
Sbjct: 301 IALVGKYTKFSDSYASVIKALEHSALAINHKLEIKYIDSTDLEPSTLQEEPVRYHEAWQK 360
Query: 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 419
L A G+LVPGGFG RG +GKI A +AR+ + P+LG+CLGMQ+AV+EF+R+VL +DAN
Sbjct: 361 LCSAHGVLVPGGFGVRGTEGKIQAIAWARKQKKPFLGVCLGMQLAVVEFSRNVLGWQDAN 420
Query: 420 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479
STEFDP T +P VI MPE + MGGTMRLG RRT FQ K+ KLYG+ +++ERHRH
Sbjct: 421 STEFDPKTSHPVVIDMPEHNPGQMGGTMRLGKRRTLFQTKNSVMRKLYGDTDYLEERHRH 480
Query: 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
R+EVNP + LE GL F G+D +RME+
Sbjct: 481 RFEVNPVLKKCLEEQGLKFVGQDVEGERMEI 511
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q7ZXP9|PYG1B_XENLA CTP synthase 1-B OS=Xenopus laevis GN=ctps1-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 620 bits (1598), Expect = e-177, Method: Compositional matrix adjust.
Identities = 300/511 (58%), Positives = 381/511 (74%), Gaps = 1/511 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKGV ASS+G +LK+ L VT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGVIASSVGTILKSSNLHVTSIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DI+LT+DNN+TTGKIYQSVI+KERKGDYLGKTVQVVPHIT+
Sbjct: 61 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQSVINKERKGDYLGKTVQVVPHITEA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ R A+IPVD +VCVIELGGT+GDIESMPF+EA QF ++ NFC IHV
Sbjct: 121 IQEWVMRQALIPVDEDGIEPEVCVIELGGTVGDIESMPFVEAFRQFQFKARRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CR + LD +VK K+S FCHV Q
Sbjct: 181 SLVPQPSATGEQKTKPTQNSVRELRGLGLSPDLVVCRCSTPLDTSVKEKISMFCHVEPQQ 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQ-GTTKEPLLKEWTSRAEICDGLHEPVR 299
+I ++DV +I+ +PLLL +Q + + L+L G LL +W A+ + L E
Sbjct: 241 VICVHDVSSIYRVPLLLEEQGVVDYFRQRLDLPIGRQPRRLLMKWKEMADRYERLLESCS 300
Query: 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359
IA+VGKYT SD+Y S++KAL H+++ + +L I +I + DLE T +E P Y AW+
Sbjct: 301 IALVGKYTKFSDSYASVIKALEHSALAINHRLEIKYIDSADLEQETLQEEPVRYHEAWQK 360
Query: 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 419
L +DGILVPGGFG RG +GKI A +AR+ + P+LG+CLGMQ+AV+EFAR VL+ +DAN
Sbjct: 361 LCSSDGILVPGGFGVRGTEGKIQAIAWARKQKKPFLGVCLGMQLAVVEFARDVLDWKDAN 420
Query: 420 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479
STEF+P T +P VI MPE + MGGTMRLG RRT F ++ KLYG +++ERHRH
Sbjct: 421 STEFNPKTSHPVVIDMPEHNPGQMGGTMRLGKRRTIFHSQNSVMKKLYGGHEYVEERHRH 480
Query: 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
RYEVNP++ LE GL F G+D +RME+
Sbjct: 481 RYEVNPELRRELEARGLKFVGQDTEGERMEI 511
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Xenopus laevis (taxid: 8355) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q1RMS2|PYRG2_BOVIN CTP synthase 2 OS=Bos taurus GN=CTPS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 619 bits (1596), Expect = e-176, Method: Compositional matrix adjust.
Identities = 297/511 (58%), Positives = 385/511 (75%), Gaps = 1/511 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKG+ ASSIG +LK+CGLRVT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
L+DGGEVDLDLGNYERF+DI L +DNNITTGKIYQ VI+KER+GDYLGKTVQVVPHITD
Sbjct: 61 LNDGGEVDLDLGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
+Q+W+ AM+PVDG + +CVIELGGTIGDIE MPF+EA QF ++ NFC IHV
Sbjct: 121 VQEWVMNQAMVPVDGHKEEPQICVIELGGTIGDIEGMPFVEAFRQFQFKAKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CRS+ ++ VK K+S FCHV +
Sbjct: 181 SLVPQPSATGEQKTKPTQNSVRALRGLGLSPDLIVCRSSTPIEMAVKEKISMFCHVNPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQ-GTTKEPLLKEWTSRAEICDGLHEPVR 299
+I ++DV + + +P+LL +Q + + L+L G + LL +W + A+ + L +
Sbjct: 241 VICIHDVSSTYRVPVLLEEQGIIKYFKERLDLPIGDSASSLLSKWRNMADRYERLQKTCS 300
Query: 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359
IA+VGKYT L D Y S+ KAL H+++ + KL + +I + DLE TE E+P + AW+
Sbjct: 301 IALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEQTTEVEDPVKFHEAWQK 360
Query: 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 419
L ADG+LVPGGFG RG GK+ A +AR +IP+LG+CLGMQ+AVIEFAR+ LNL+DA+
Sbjct: 361 LCKADGVLVPGGFGIRGTLGKLQAISWARSRKIPFLGVCLGMQLAVIEFARNCLNLKDAD 420
Query: 420 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479
STEF+PN + P VI MPE + ++GGTMRLG RRT F+ ++ KLYG+ FI+ERHRH
Sbjct: 421 STEFEPNARVPVVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHRH 480
Query: 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
RYEVNP +I++LE LSF G+D +RME+
Sbjct: 481 RYEVNPSLISQLEQKDLSFVGQDVDGERMEI 511
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Constitutes the rate-limiting enzyme in the synthesis of cytosine nucleotides. Bos taurus (taxid: 9913) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q5XHA8|PYG1A_XENLA CTP synthase 1-A OS=Xenopus laevis GN=ctps1-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 619 bits (1596), Expect = e-176, Method: Compositional matrix adjust.
Identities = 302/511 (59%), Positives = 380/511 (74%), Gaps = 1/511 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKGV ASSIG +LK+ L VT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGVIASSIGTILKSSNLHVTSIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DI+LT+DNN+TTGKIYQSVI+KERKGDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQSVINKERKGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ R A+IPVD +VCVIELGGT+GDIESMPF+EA QF ++V NFC IHV
Sbjct: 121 IQEWVMRQALIPVDEDGIEPEVCVIELGGTVGDIESMPFVEAFRQFQFKVRRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CR + LD +VK K+S FCHV Q
Sbjct: 181 SLVPQPSATGEQKTKPTQNSVRELRGLGLSPDLVVCRCSTPLDTSVKEKISMFCHVEPQQ 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQ-GTTKEPLLKEWTSRAEICDGLHEPVR 299
+I ++DV +I+ +PLLL +Q + + L+L G LL +W A+ + L E
Sbjct: 241 VICVHDVSSIYRVPLLLEEQGVVDYFRQRLDLPIGRQPRRLLMKWKEMADRYERLLESCS 300
Query: 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359
IA+VGKYT SD+Y S++KAL H+++ + +L I +I + DLE T +E P Y AW+
Sbjct: 301 IALVGKYTKFSDSYASVIKALEHSALAINHRLEIKYIDSADLEQETLQEEPVRYHEAWQK 360
Query: 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 419
L ++GILVPGGFG RG +GKI A +AR+ + P+LG+CLGMQ+AV+EFAR VL DAN
Sbjct: 361 LCSSEGILVPGGFGVRGTEGKIQAIAWARKQKKPFLGVCLGMQLAVVEFARDVLGWTDAN 420
Query: 420 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479
STEF+P T +P VI MPE + MGGTMRLG RRT F ++ KLYG +++ERHRH
Sbjct: 421 STEFNPKTSHPVVIDMPEHNPGQMGGTMRLGKRRTIFHSQNSIMKKLYGGHEYVEERHRH 480
Query: 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
RYEVNP++ LE GL F G+D +RME+
Sbjct: 481 RYEVNPELRRELEVRGLKFVGQDTEGERMEI 511
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Xenopus laevis (taxid: 8355) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|P17812|PYRG1_HUMAN CTP synthase 1 OS=Homo sapiens GN=CTPS1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 618 bits (1594), Expect = e-176, Method: Compositional matrix adjust.
Identities = 302/512 (58%), Positives = 382/512 (74%), Gaps = 3/512 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKG+ ASS+G +LK+CGL VT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DI+LT+DNN+TTGKIYQ VI+KERKGDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ R A+IPVD VCVIELGGT+GDIESMPFIEA QF ++V NFC IHV
Sbjct: 121 IQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CR + LD +VK K+S FCHV +
Sbjct: 181 SLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEP--LLKEWTSRAEICDGLHEPV 298
+I ++DV +I+ +PLLL +Q + + L+L ++P +L +W A+ D L E
Sbjct: 241 VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLP-IERQPRKMLMKWKEMADRYDRLLETC 299
Query: 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK 358
IA+VGKYT SD+Y S++KAL H+++ + KL I +I + DLE T +E P Y AW+
Sbjct: 300 SIALVGKYTKFSDSYASVIKALEHSALAINHKLEIKYIDSADLEPITSQEEPVRYHEAWQ 359
Query: 359 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418
L A G+LVPGGFG RG +GKI A +AR + P+LG+CLGMQ+AV+EF+R+VL +DA
Sbjct: 360 KLCSAHGVLVPGGFGVRGTEGKIQAIAWARNQKKPFLGVCLGMQLAVVEFSRNVLGWQDA 419
Query: 419 NSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHR 478
NSTEFDP T +P V+ MPE + MGGTMRLG RRT FQ K+ KLYG+ +++ERHR
Sbjct: 420 NSTEFDPTTSHPVVVDMPEHNPGQMGGTMRLGKRRTLFQTKNSVMRKLYGDADYLEERHR 479
Query: 479 HRYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
HR+EVNP LE GL F G+D +RME+
Sbjct: 480 HRFEVNPVWKKCLEEQGLKFVGQDVEGERMEI 511
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q6GME1|PYRG2_XENLA CTP synthase 2 OS=Xenopus laevis GN=ctps2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 617 bits (1592), Expect = e-176, Method: Compositional matrix adjust.
Identities = 298/514 (57%), Positives = 384/514 (74%), Gaps = 7/514 (1%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKG+ ASSIG +LK+CGLRVT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGVGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
L+DGGEVDLDLGNYERF+DI L +DNNITTGKIYQ VI++ER+GDYLGKTVQVVPHITD
Sbjct: 61 LNDGGEVDLDLGNYERFLDINLYKDNNITTGKIYQQVINRERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ A +PVD + +CVIELGGTIGDIE MPFIEA QF ++ NFC IHV
Sbjct: 121 IQEWVLNQAKVPVDRDQKEPQICVIELGGTIGDIEGMPFIEAFRQFQFKAKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CRS ++ VK K+S FCHV +
Sbjct: 181 SLVPQPSATGEQKTKPTQNSVRALRGLGLSPDLIVCRSAKPIEMAVKQKISMFCHVEPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNL----QGTTKEPLLKEWTSRAEICDGLHE 296
+I ++DV + + +P+LL++Q + + L++ Q +T+ L +W A+ + L +
Sbjct: 241 VIFVHDVSSTYRVPILLQEQGIIKYFKQRLSIPIEDQPSTQ---LFKWKRMADRYERLLK 297
Query: 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAA 356
IA+VGKYT LSD Y S+ KAL H+++ + KL + +I + DLE + + ++P Y A
Sbjct: 298 TCSIALVGKYTKLSDCYTSVFKALEHSALAINHKLNLMYIDSADLEPSMKAQDPVKYHKA 357
Query: 357 WKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416
W+ L A+GILVPGGFG RG +GKI A +ARE +IP+LGICLGMQ+AV+EFAR++L +
Sbjct: 358 WEELCKAEGILVPGGFGLRGTEGKIQAITWARERKIPFLGICLGMQLAVVEFARNILKMT 417
Query: 417 DANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDER 476
DANSTEFDPNTKNP VI MPE MGGTMRLGSR+T F+ + KLY N+ F++ER
Sbjct: 418 DANSTEFDPNTKNPAVIDMPEHHPGDMGGTMRLGSRKTVFKTSESVVKKLYDNQDFVEER 477
Query: 477 HRHRYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
HRHRYEVNP+++ + E GL F G+D QRME+
Sbjct: 478 HRHRYEVNPELVQQFEEKGLKFVGQDNEGQRMEI 511
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Constitutes the rate-limiting enzyme in the synthesis of cytosine nucleotides. Xenopus laevis (taxid: 8355) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q9NRF8|PYRG2_HUMAN CTP synthase 2 OS=Homo sapiens GN=CTPS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 610 bits (1574), Expect = e-174, Method: Compositional matrix adjust.
Identities = 296/511 (57%), Positives = 381/511 (74%), Gaps = 1/511 (0%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKG+ ASSIG +LK+CGLRVT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
L+DGGEVDLDLGNYERF+DI L +DNNITTGKIYQ VI+KER+GDYLGKTVQVVPHITD
Sbjct: 61 LNDGGEVDLDLGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
+Q+W+ A +PVDG + +CVIELGGTIGDIE MPF+EA QF ++ NFC IHV
Sbjct: 121 VQEWVMNQAKVPVDGNKEEPQICVIELGGTIGDIEGMPFVEAFRQFQFKAKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP L+ GEQKTKPTQ+SVR LRG GL+P+++ CRS+ ++ VK K+S FCHV +
Sbjct: 181 SLVPQLSATGEQKTKPTQNSVRALRGLGLSPDLIVCRSSTPIEMAVKEKISMFCHVNPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQ-GTTKEPLLKEWTSRAEICDGLHEPVR 299
+I ++DV + + +P+LL +Q + + L+L G + LL +W + A+ + L +
Sbjct: 241 VICIHDVSSTYRVPVLLEEQSIVKYFKERLHLPIGDSASNLLFKWRNMADRYERLQKICS 300
Query: 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359
IA+VGKYT L D Y S+ KAL H+++ + KL + +I + DLE TE E+P + AW+
Sbjct: 301 IALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQK 360
Query: 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 419
L ADGILVPGGFG RG GK+ A +AR +IP+LG+CLGMQ+AVIEFAR+ LNL+DA+
Sbjct: 361 LCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVCLGMQLAVIEFARNCLNLKDAD 420
Query: 420 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479
STEF PN P VI MPE + ++GGTMRLG RRT F+ ++ KLYG+ FI+ERHRH
Sbjct: 421 STEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHRH 480
Query: 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
R+EVNP++I + E LSF G+D RME+
Sbjct: 481 RFEVNPNLIKQFEQNDLSFVGQDVDGDRMEI 511
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Constitutes the rate-limiting enzyme in the synthesis of cytosine nucleotides. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q6FUD0|PYRG_CANGA CTP synthase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=URA7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 606 bits (1563), Expect = e-172, Method: Compositional matrix adjust.
Identities = 296/523 (56%), Positives = 383/523 (73%), Gaps = 14/523 (2%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYV+V+GGV+SG+GKGV ASS G+LLK GL+VT IKIDPY+N DAGTMSP EHGE FV
Sbjct: 1 MKYVVVSGGVISGIGKGVLASSTGMLLKTLGLKVTSIKIDPYMNIDAGTMSPLEHGECFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
L+DGGE DLDLGNYER++++ LT+D+NITTGKIY VI KERKGDYLGKTVQ+VPH+T+
Sbjct: 61 LNDGGETDLDLGNYERYLNVTLTKDHNITTGKIYSHVIAKERKGDYLGKTVQIVPHLTNA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIERV+ IPVD DVC+IELGGT+GDIES PF+EAL QF +RVG NF LIHV
Sbjct: 121 IQEWIERVSRIPVDNTGMEPDVCIIELGGTVGDIESAPFVEALRQFQFRVGKENFALIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPV++ GEQKTKPTQ +++ LR GL P+++ACR + L+ V K++ FCHV
Sbjct: 181 SLVPVIH--GEQKTKPTQAAIKDLRSLGLVPDMIACRCSETLEKGVIEKIAMFCHVGADQ 238
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTT--------KEPLLKEWTSRAEICD 292
++ ++DV + +H+PLLL +QK + + L LQ T E LL +W S D
Sbjct: 239 VVNVHDVNSTYHVPLLLLEQKMINYLHQRLQLQEITLSSEDIQRGENLLSKWKSMTGNFD 298
Query: 293 GLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDA 352
E V+IA+VGKYT L D+YLS++KAL H+S+ R+KL I W+ A DLE T+
Sbjct: 299 SSMETVKIALVGKYTNLKDSYLSVIKALEHSSMKCRRKLEIMWVEATDLEPETQDTEKAK 358
Query: 353 YKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412
+ AW + ADGILVPGGFG+RG +G +LA+++ARE+ IP+LG+CLG+Q+A IEFAR+V
Sbjct: 359 FHEAWNKVSTADGILVPGGFGSRGTEGMMLASRWARENHIPFLGVCLGLQIATIEFARNV 418
Query: 413 LNLRDANSTEFDP--NTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ--IKDCKSAKLYG 468
L +++ NS EF P + N V+FMPE K MGG+MRLG R TYFQ + C KLYG
Sbjct: 419 LGVKEGNSAEFFPELDESNQVVVFMPEIDKETMGGSMRLGLRPTYFQQGTEWCAIKKLYG 478
Query: 469 NRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVW 511
+ ++ERHRHRYE+NP+ I RLE GL F G+DET++R E++
Sbjct: 479 SAESVEERHRHRYEINPNFIERLEEHGLMFVGRDETNKRCEIF 521
|
Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 524 | ||||||
| 356526673 | 603 | PREDICTED: CTP synthase-like [Glycine ma | 0.973 | 0.845 | 0.870 | 0.0 | |
| 357517335 | 608 | CTP synthase like protein [Medicago trun | 0.973 | 0.838 | 0.864 | 0.0 | |
| 225462352 | 595 | PREDICTED: CTP synthase [Vitis vinifera] | 0.973 | 0.857 | 0.868 | 0.0 | |
| 449433445 | 602 | PREDICTED: CTP synthase-like [Cucumis sa | 0.973 | 0.847 | 0.849 | 0.0 | |
| 449490766 | 569 | PREDICTED: CTP synthase-like [Cucumis sa | 0.973 | 0.896 | 0.849 | 0.0 | |
| 356559159 | 601 | PREDICTED: CTP synthase-like [Glycine ma | 0.973 | 0.848 | 0.860 | 0.0 | |
| 224057884 | 605 | predicted protein [Populus trichocarpa] | 0.973 | 0.842 | 0.842 | 0.0 | |
| 224072427 | 595 | predicted protein [Populus trichocarpa] | 0.973 | 0.857 | 0.870 | 0.0 | |
| 297851536 | 600 | hypothetical protein ARALYDRAFT_473316 [ | 0.973 | 0.85 | 0.849 | 0.0 | |
| 224109142 | 605 | predicted protein [Populus trichocarpa] | 0.973 | 0.842 | 0.843 | 0.0 |
| >gi|356526673|ref|XP_003531941.1| PREDICTED: CTP synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/510 (87%), Positives = 481/510 (94%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIG+LLKACGLRVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTAIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQDWIERVA IPVDGK P DVCVIELGGTIGDIESMPFI+ALGQFSYRVG GNFCL+HV
Sbjct: 121 IQDWIERVAHIPVDGKTSPADVCVIELGGTIGDIESMPFIQALGQFSYRVGAGNFCLVHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVLNVVGEQKTKPTQHSVR LRGQGLTP+ILACRST+ LD+N KGKLSQFC +P +N
Sbjct: 181 SLVPVLNVVGEQKTKPTQHSVRALRGQGLTPHILACRSTMVLDENAKGKLSQFCLIPAEN 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
I+TLYDVPNIWHIPLLLRDQKAHEA+FKVLNL G TKEP L+EWT RAE D LHEPVRI
Sbjct: 241 IVTLYDVPNIWHIPLLLRDQKAHEAMFKVLNLHGVTKEPNLEEWTCRAESSDLLHEPVRI 300
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
A+VGKYT LSD+YLS+LKALLHASVD +KKLV+DWIPA +LE AT KENPDA+KAAWKLL
Sbjct: 301 ALVGKYTCLSDSYLSVLKALLHASVDCQKKLVVDWIPASNLESATAKENPDAFKAAWKLL 360
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
KGADG+LVPGGFG+RGVQGKI+AAKYARE+RIP+LGICLGMQ+AVIEFARSVL ++DANS
Sbjct: 361 KGADGVLVPGGFGDRGVQGKIIAAKYARENRIPFLGICLGMQIAVIEFARSVLGVQDANS 420
Query: 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 480
TEF+P+TK+P +IFMPEGSKTHMGGTMRLGSRRTYFQ K+CKSAKLYG ++FIDERHRHR
Sbjct: 421 TEFEPHTKSPYIIFMPEGSKTHMGGTMRLGSRRTYFQTKECKSAKLYGCKSFIDERHRHR 480
Query: 481 YEVNPDMIARLENAGLSFTGKDETSQRMEV 510
YEVNPD++ARLENAGLSFTGKDET QRME+
Sbjct: 481 YEVNPDLVARLENAGLSFTGKDETGQRMEI 510
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357517335|ref|XP_003628956.1| CTP synthase like protein [Medicago truncatula] gi|355522978|gb|AET03432.1| CTP synthase like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/510 (86%), Positives = 476/510 (93%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIG+LLKACGLRVT IKIDPYLNTDAGTMSP EHGEV+V
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTAIKIDPYLNTDAGTMSPIEHGEVYV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERFMD+KLTRDNNITTGKIYQSVIDKER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFMDVKLTRDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQDWIERVA IPVDGKEGP DVCVIELGGTIGDIESMPFI+ALG FSYRVG NFCL+HV
Sbjct: 121 IQDWIERVAHIPVDGKEGPADVCVIELGGTIGDIESMPFIQALGHFSYRVGANNFCLVHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVLNVVGEQKTKPTQHSVRGLR QGLTP ILACRST+ LD+N K KLSQFC +P +N
Sbjct: 181 SLVPVLNVVGEQKTKPTQHSVRGLRSQGLTPQILACRSTMVLDENAKAKLSQFCLLPGEN 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
IITLYDVPNIWHIPLLLRDQKAHEAIFKVLN++G T+EP L+EWT RAE CD LHEPVRI
Sbjct: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNIKGMTQEPNLEEWTCRAESCDLLHEPVRI 300
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
A+VGKYT LSD+YLS+ KAL+HASV +KKL +DWI A +LEDAT KENPDAYKAAWKLL
Sbjct: 301 ALVGKYTCLSDSYLSVTKALVHASVSCQKKLTVDWISATNLEDATAKENPDAYKAAWKLL 360
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
KGADG+LVPGGFG+RGVQGKI+AAKYARE+RIPYLGICLGMQ+AVIEFARSVL L+DANS
Sbjct: 361 KGADGVLVPGGFGDRGVQGKIIAAKYARENRIPYLGICLGMQIAVIEFARSVLGLKDANS 420
Query: 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 480
TEFDPNTK+PCVIFMPEGSKTHMGGTMRLGSRRTYFQ K+CKSAKLYG ++FIDERHRHR
Sbjct: 421 TEFDPNTKSPCVIFMPEGSKTHMGGTMRLGSRRTYFQTKECKSAKLYGCKSFIDERHRHR 480
Query: 481 YEVNPDMIARLENAGLSFTGKDETSQRMEV 510
YEVNPD++ LEN+GLSFTGKDET QRME+
Sbjct: 481 YEVNPDLVTSLENSGLSFTGKDETGQRMEI 510
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462352|ref|XP_002265957.1| PREDICTED: CTP synthase [Vitis vinifera] gi|297736081|emb|CBI24119.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/510 (86%), Positives = 472/510 (92%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIG+LLKACGLRVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DIKLTRDNNITTGKIYQSVIDKER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIERVA++PVDGKEGP DVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV
Sbjct: 121 IQEWIERVAIVPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVLNVVGEQKTKPTQHSVRGLRG GLTPNILACRST ALD+NVK KLSQFCHVP +N
Sbjct: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGLGLTPNILACRSTKALDENVKAKLSQFCHVPAEN 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
IITLYDVPNIWHIPLLLRDQKAHEAI K LNL G +EP LKEWT R E+CD LH PVRI
Sbjct: 241 IITLYDVPNIWHIPLLLRDQKAHEAILKRLNLIGVAREPDLKEWTIRTEVCDTLHNPVRI 300
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
AMVGKYTGLSDAYLS+LKALLHASV +KL+++WI A DLED T KE PDA+KAAW LL
Sbjct: 301 AMVGKYTGLSDAYLSVLKALLHASVACHRKLIVEWIAADDLEDVTAKEAPDAHKAAWDLL 360
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
KGADGILVPGGFG+RGVQGKILAAKYARE +P+LGICLGMQ+AVIEFARSVL L+DANS
Sbjct: 361 KGADGILVPGGFGDRGVQGKILAAKYAREKDVPFLGICLGMQIAVIEFARSVLGLQDANS 420
Query: 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 480
TEFDP TKNPCVIFMPEGSKTHMGGTMRLGSRRTYF+ DCKSAKLYG +F+DERHRHR
Sbjct: 421 TEFDPKTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFEFADCKSAKLYGGVSFVDERHRHR 480
Query: 481 YEVNPDMIARLENAGLSFTGKDETSQRMEV 510
YEVNP+M ++LE+AGLSF GKDET RME+
Sbjct: 481 YEVNPNMTSQLEDAGLSFVGKDETGHRMEI 510
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433445|ref|XP_004134508.1| PREDICTED: CTP synthase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/510 (84%), Positives = 475/510 (93%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIG+LLKACGLRVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DIKLT DNNITTGKIYQSVIDKER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTHDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIER A+IPVDGK+GP D+CVIELGGTIGDIESMPFIEALGQFSYRVG GNFCLIHV
Sbjct: 121 IQEWIERAALIPVDGKDGPADICVIELGGTIGDIESMPFIEALGQFSYRVGSGNFCLIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVL VVGEQKTKPTQHSVRGLR GLTP++LACRST+ LD+NVK KLSQFCHVP +
Sbjct: 181 SLVPVLKVVGEQKTKPTQHSVRGLRSLGLTPHVLACRSTMVLDENVKRKLSQFCHVPVDS 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
IITLYDVPNIWHIPLLL+DQKAHEAI KVLNL P L+EWT+RAE+CD LHEPVRI
Sbjct: 241 IITLYDVPNIWHIPLLLKDQKAHEAILKVLNLHSIAGGPALEEWTARAEMCDSLHEPVRI 300
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
AMVGKY GLSD+YLS+LKAL HAS+ KKL++DW+PA DLEDAT +ENP A+KAAWKLL
Sbjct: 301 AMVGKYMGLSDSYLSVLKALKHASLRCLKKLIVDWVPAGDLEDATAQENPAAHKAAWKLL 360
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
KGADGILVPGGFG+RGV+GKILA+KYARE+++P+LGICLGMQ+AVIEFARSVLNL+DANS
Sbjct: 361 KGADGILVPGGFGDRGVEGKILASKYARENKVPFLGICLGMQIAVIEFARSVLNLKDANS 420
Query: 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 480
TEFD +TKNPCVIFMPE SKTHMGGTMRLGSRRTYFQ+ DCKSAKLYGN+++IDERHRHR
Sbjct: 421 TEFDTSTKNPCVIFMPEVSKTHMGGTMRLGSRRTYFQVVDCKSAKLYGNKSYIDERHRHR 480
Query: 481 YEVNPDMIARLENAGLSFTGKDETSQRMEV 510
YEVNP M+++LENAGLSFTGKDET QRME+
Sbjct: 481 YEVNPHMVSQLENAGLSFTGKDETGQRMEI 510
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449490766|ref|XP_004158701.1| PREDICTED: CTP synthase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/510 (84%), Positives = 475/510 (93%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIG+LLKACGLRVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DIKLT DNNITTGKIYQSVIDKER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTHDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIER A+IPVDGK+GP D+CVIELGGTIGDIESMPFIEALGQFSYRVG GNFCLIHV
Sbjct: 121 IQEWIERAALIPVDGKDGPADICVIELGGTIGDIESMPFIEALGQFSYRVGSGNFCLIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVL VVGEQKTKPTQHSVRGLR GLTP++LACRST+ LD+NVK KLSQFCHVP +
Sbjct: 181 SLVPVLKVVGEQKTKPTQHSVRGLRSLGLTPHVLACRSTMVLDENVKRKLSQFCHVPVDS 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
IITLYDVPNIWHIPLLL+DQKAHEAI KVLNL P L+EWT+RAE+CD LHEPVRI
Sbjct: 241 IITLYDVPNIWHIPLLLKDQKAHEAILKVLNLHSIAGGPALEEWTARAEMCDSLHEPVRI 300
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
AMVGKY GLSD+YLS+LKAL HAS+ KKL++DW+PA DLEDAT +ENP A+KAAWKLL
Sbjct: 301 AMVGKYMGLSDSYLSVLKALKHASLRCLKKLIVDWVPAGDLEDATAQENPAAHKAAWKLL 360
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
KGADGILVPGGFG+RGV+GKILA+KYARE+++P+LGICLGMQ+AVIEFARSVLNL+DANS
Sbjct: 361 KGADGILVPGGFGDRGVEGKILASKYARENKVPFLGICLGMQIAVIEFARSVLNLKDANS 420
Query: 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 480
TEFD +TKNPCVIFMPE SKTHMGGTMRLGSRRTYFQ+ DCKSAKLYGN+++IDERHRHR
Sbjct: 421 TEFDTSTKNPCVIFMPEVSKTHMGGTMRLGSRRTYFQVVDCKSAKLYGNKSYIDERHRHR 480
Query: 481 YEVNPDMIARLENAGLSFTGKDETSQRMEV 510
YEVNP M+++LENAGLSFTGKDET QRME+
Sbjct: 481 YEVNPHMVSQLENAGLSFTGKDETGQRMEI 510
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559159|ref|XP_003547868.1| PREDICTED: CTP synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/510 (86%), Positives = 476/510 (93%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIG+LLKACGLRVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTAIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFIDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQDWIERVA IPVDG GP DVCV+ELGGTIGDIESMPFI+ALGQFSYRVG GNFCL+HV
Sbjct: 121 IQDWIERVAHIPVDGMIGPADVCVVELGGTIGDIESMPFIQALGQFSYRVGAGNFCLVHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVLNVVGEQKTK TQHSVR LRGQGLTP+ILACRST+ LD+N KGKLSQFC +P +N
Sbjct: 181 SLVPVLNVVGEQKTKATQHSVRALRGQGLTPHILACRSTMVLDENAKGKLSQFCLIPAEN 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
I+TLYDVPNIWHIPLLLRDQKAHEA+FKVLNL G KEP L+EWT RAE D L+EPVRI
Sbjct: 241 IVTLYDVPNIWHIPLLLRDQKAHEAMFKVLNLHGVAKEPNLEEWTCRAESSDLLYEPVRI 300
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
A+VGKYT LSD+YLSILKALLHASVD +KKLV+DWIPA +LE AT K N DAYKAAWKLL
Sbjct: 301 ALVGKYTCLSDSYLSILKALLHASVDCQKKLVVDWIPASNLETATAKGNHDAYKAAWKLL 360
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
KGADG+LVPGGFG+RGVQGKI+AAKYARE+RIP+LGICLGMQ+AVIEFARSVL ++DANS
Sbjct: 361 KGADGVLVPGGFGDRGVQGKIIAAKYARENRIPFLGICLGMQIAVIEFARSVLGVQDANS 420
Query: 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 480
TEF+P+TK+P +IFMPEGSKTHMGGTMRLGSRRTYFQ K+CKSAKLYG ++FIDERHRHR
Sbjct: 421 TEFEPHTKSPYIIFMPEGSKTHMGGTMRLGSRRTYFQTKECKSAKLYGCKSFIDERHRHR 480
Query: 481 YEVNPDMIARLENAGLSFTGKDETSQRMEV 510
YEVNPD++A LENAGLSFTGKDET QRME+
Sbjct: 481 YEVNPDLVACLENAGLSFTGKDETGQRMEI 510
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224057884|ref|XP_002299372.1| predicted protein [Populus trichocarpa] gi|222846630|gb|EEE84177.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/520 (84%), Positives = 475/520 (91%), Gaps = 10/520 (1%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVT IKIDPYLNTDAGTMSPFEHGEV+V
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVYV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQS----------VIDKERKGDYLGKT 110
LDDGGEVDLDLGNYERF+DIKLTRDNNITTGKIYQ+ VIDKER+GDYLGKT
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQASGLNFMFLCAVIDKERRGDYLGKT 120
Query: 111 VQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRV 170
VQVVPHITD IQ+WIERVA+IPVDG+ GP DVCVIELGGTIGDIESMPF EALGQFSYRV
Sbjct: 121 VQVVPHITDAIQEWIERVALIPVDGQPGPADVCVIELGGTIGDIESMPFTEALGQFSYRV 180
Query: 171 GPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKL 230
G GNFCLIHVSLVPV++ VGEQKTKPTQHSVRGLR GLTPNILACRST AL++NVK KL
Sbjct: 181 GAGNFCLIHVSLVPVISAVGEQKTKPTQHSVRGLRSLGLTPNILACRSTSALEENVKQKL 240
Query: 231 SQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEI 290
SQFCHVP +NIITLYDVPNIWH+P LLRDQKAHE I LNL G KEP LKEWTSRAE
Sbjct: 241 SQFCHVPVKNIITLYDVPNIWHLPSLLRDQKAHEGILGALNLPGFVKEPNLKEWTSRAEF 300
Query: 291 CDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENP 350
CD L EPVRIA+VGKYTGLSD+YLS+LKALLHASV LRKKLV+DW+PA D+ED T +ENP
Sbjct: 301 CDMLLEPVRIAVVGKYTGLSDSYLSLLKALLHASVSLRKKLVVDWVPASDIEDETARENP 360
Query: 351 DAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR 410
DAYKAAWKLLKGADG+LVPGGFG+RGV+GKILAAKYARE+RIP+LGICLGMQ+AVIEFAR
Sbjct: 361 DAYKAAWKLLKGADGVLVPGGFGDRGVEGKILAAKYARENRIPFLGICLGMQIAVIEFAR 420
Query: 411 SVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNR 470
S+L L DANSTEFDP+TK+PCV+FMPEGSKTH+GGTMRLGSRRTYFQ+ D KSAKLYGNR
Sbjct: 421 SILGLHDANSTEFDPDTKSPCVVFMPEGSKTHLGGTMRLGSRRTYFQVMDSKSAKLYGNR 480
Query: 471 TFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
F+DERHRHRYEVNPDM++ LE+AGLSFTGKDET QRME+
Sbjct: 481 GFVDERHRHRYEVNPDMVSSLEDAGLSFTGKDETGQRMEI 520
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224072427|ref|XP_002303728.1| predicted protein [Populus trichocarpa] gi|222841160|gb|EEE78707.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/510 (87%), Positives = 481/510 (94%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYV+VTGGVVSGLGKGVTASSIGVLLKACG RVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVVVTGGVVSGLGKGVTASSIGVLLKACGFRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DIKLTRDNNITTGKIYQ+VIDKER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQAVIDKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIERVAMIPVDG+ GP DVCVIELGGTIGDIESMPF EALGQFSYRVG GNFCL+HV
Sbjct: 121 IQEWIERVAMIPVDGQPGPADVCVIELGGTIGDIESMPFTEALGQFSYRVGAGNFCLVHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVL+ VGEQKTKPTQHSVRGLR GLTPNILACRST+AL++NVK KLSQFCHVP +N
Sbjct: 181 SLVPVLSAVGEQKTKPTQHSVRGLRSLGLTPNILACRSTLALEENVKQKLSQFCHVPAEN 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
IITLYDVPNIWH+PLLLRDQKAHEAI VLNL G +EP +KEWTSRAE+CD L EPVRI
Sbjct: 241 IITLYDVPNIWHLPLLLRDQKAHEAILGVLNLLGIAREPNVKEWTSRAELCDMLLEPVRI 300
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
A+VGKYTGLSD+YLS+LKALLHASV LRKKLV+DWIPA DLED T KENPD YKAAWKLL
Sbjct: 301 AIVGKYTGLSDSYLSLLKALLHASVSLRKKLVVDWIPASDLEDETAKENPDVYKAAWKLL 360
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
KG+DG+LVPGGFG+RGV+GKILAAKYARE+RIP+LGICLGMQ+AVIEFARS+L L+DANS
Sbjct: 361 KGSDGVLVPGGFGDRGVEGKILAAKYARENRIPFLGICLGMQIAVIEFARSILGLQDANS 420
Query: 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 480
TEFDP+TK+PCVIFMPEGSKTH+GGTMRLGSRRTYFQ+ DCKSAKLYGNR FIDERHRHR
Sbjct: 421 TEFDPDTKDPCVIFMPEGSKTHLGGTMRLGSRRTYFQVMDCKSAKLYGNRGFIDERHRHR 480
Query: 481 YEVNPDMIARLENAGLSFTGKDETSQRMEV 510
YEVNPDM++RLE+AGLSFTGKDET QRME+
Sbjct: 481 YEVNPDMVSRLEDAGLSFTGKDETGQRMEI 510
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297851536|ref|XP_002893649.1| hypothetical protein ARALYDRAFT_473316 [Arabidopsis lyrata subsp. lyrata] gi|297339491|gb|EFH69908.1| hypothetical protein ARALYDRAFT_473316 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/510 (84%), Positives = 470/510 (92%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DIKLTRDNNITTGKIYQ VI KERKGDYLGKTVQVVPH+TD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQHVIAKERKGDYLGKTVQVVPHVTDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQDWIERVA+IPVDG+EGP DVCVIELGGTIGDIES PFIEALGQFSYRVGPGNFCL+HV
Sbjct: 121 IQDWIERVAVIPVDGEEGPADVCVIELGGTIGDIESAPFIEALGQFSYRVGPGNFCLVHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVLNVVGEQKTKPTQHSV+GLRG GLTP+ILACRST AL+DNVK KL+QFCHVP +
Sbjct: 181 SLVPVLNVVGEQKTKPTQHSVKGLRGLGLTPDILACRSTKALEDNVKEKLAQFCHVPLEY 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
I TLYDVPNIWHIPLLL+DQKAH I KVLNL EP L EWTSRAE+CD LH PVRI
Sbjct: 241 IFTLYDVPNIWHIPLLLKDQKAHLVISKVLNLASILNEPSLGEWTSRAELCDNLHVPVRI 300
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
A+VGKYTGLSDAYLS+LKALLHASV RKKLV+DW+PACDLE TEKENPDAYKAAWKLL
Sbjct: 301 AVVGKYTGLSDAYLSVLKALLHASVACRKKLVVDWVPACDLEKETEKENPDAYKAAWKLL 360
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
KG DG+LVPGGFG+RGV+GKILAAKYARE++IP+LGICLGMQ+AVIEFARSVL L DANS
Sbjct: 361 KGVDGVLVPGGFGDRGVEGKILAAKYARENKIPFLGICLGMQIAVIEFARSVLCLHDANS 420
Query: 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 480
TEF P TK+PC+IFMPEGS+THMGGTMRLGSR+++F +KD KS+KLYGN++F+DERHRHR
Sbjct: 421 TEFKPETKHPCIIFMPEGSRTHMGGTMRLGSRKSFFNVKDSKSSKLYGNKSFVDERHRHR 480
Query: 481 YEVNPDMIARLENAGLSFTGKDETSQRMEV 510
YEVNPDM+ RLE AGLSF KDET +RME+
Sbjct: 481 YEVNPDMVERLEKAGLSFAAKDETGKRMEI 510
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109142|ref|XP_002315098.1| predicted protein [Populus trichocarpa] gi|222864138|gb|EEF01269.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 911 bits (2354), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/510 (84%), Positives = 468/510 (91%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIG+LLKACGLRVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DIKLTRDNNITTGKIYQSV++KER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVLEKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIERVA IPVDGKEGP DVCVIELGGTIGDIESMPFIEALGQFSY VGPGNFCLIHV
Sbjct: 121 IQEWIERVAFIPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYHVGPGNFCLIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVLNVVGEQKTKPTQHSVRGLRG GLTPNILACRST AL+DNVK KLSQFCHV +N
Sbjct: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGLGLTPNILACRSTKALEDNVKAKLSQFCHVAAEN 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
I+TLYDVPNIWHIPLLLRDQKAHEAI K LNL G +EP L+EWT+R + D LHEPVRI
Sbjct: 241 ILTLYDVPNIWHIPLLLRDQKAHEAILKGLNLLGVAREPDLQEWTARTRVYDILHEPVRI 300
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
AMVGKYTGLSD+YLS+LKALLHASV R+KLV++W+ A DLED T KE PD YK AW LL
Sbjct: 301 AMVGKYTGLSDSYLSVLKALLHASVACRRKLVVEWVAAGDLEDVTAKEAPDVYKNAWDLL 360
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
KG+DG+LVPGGFG+RGVQGKILAAKYARE+++P+LGICLGMQ+AVIEFARS L L DANS
Sbjct: 361 KGSDGVLVPGGFGDRGVQGKILAAKYARENKVPFLGICLGMQIAVIEFARSALGLHDANS 420
Query: 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 480
TEFDP T +PCVIFMPEGSKTHMGGTMRLGSRRTYF++ +CKSAKLY N +F+DERHRHR
Sbjct: 421 TEFDPETSHPCVIFMPEGSKTHMGGTMRLGSRRTYFKVPNCKSAKLYSNASFVDERHRHR 480
Query: 481 YEVNPDMIARLENAGLSFTGKDETSQRMEV 510
YEVNP+M+ + ENAGLSF G+DET QRME+
Sbjct: 481 YEVNPNMVPQFENAGLSFVGRDETGQRMEI 510
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 524 | ||||||
| TAIR|locus:2196984 | 600 | AT1G30820 [Arabidopsis thalian | 0.973 | 0.85 | 0.784 | 2.4e-218 | |
| TAIR|locus:2087765 | 591 | emb2742 "embryo defective 2742 | 0.971 | 0.861 | 0.754 | 7e-212 | |
| TAIR|locus:2120357 | 597 | AT4G20320 [Arabidopsis thalian | 0.973 | 0.854 | 0.750 | 8e-211 | |
| TAIR|locus:2044707 | 597 | AT2G34890 [Arabidopsis thalian | 0.973 | 0.854 | 0.698 | 1.9e-195 | |
| TAIR|locus:2132208 | 556 | AT4G02120 [Arabidopsis thalian | 0.979 | 0.922 | 0.658 | 4.8e-181 | |
| DICTYBASE|DDB_G0280567 | 569 | ctps "CTP synthase" [Dictyoste | 0.967 | 0.891 | 0.550 | 5.1e-145 | |
| UNIPROTKB|A0JNE9 | 591 | CTPS "Uncharacterized protein" | 0.971 | 0.861 | 0.539 | 6.8e-143 | |
| UNIPROTKB|F1SF78 | 591 | CTPS1 "Uncharacterized protein | 0.971 | 0.861 | 0.541 | 6.8e-143 | |
| UNIPROTKB|Q1RMS2 | 586 | CTPS2 "CTP synthase 2" [Bos ta | 0.971 | 0.868 | 0.533 | 3.7e-142 | |
| UNIPROTKB|E2QUQ3 | 591 | CTPS1 "Uncharacterized protein | 0.971 | 0.861 | 0.539 | 4.8e-142 |
| TAIR|locus:2196984 AT1G30820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2109 (747.5 bits), Expect = 2.4e-218, P = 2.4e-218
Identities = 400/510 (78%), Positives = 436/510 (85%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASSIGVLLKACGLRVT IKIDPYLNTDAGTMSPFEH
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 XXXXXXXXXXXXNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
NYERF+DIKLTRDNNITTGKIYQ VI KERKGDYLGKTVQVVPH+TD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQHVIAKERKGDYLGKTVQVVPHVTDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQDWIERVA+IPVDG+E P DVCVIELGGTIGDIES PFIEALGQFSYRVGPGNFCL+HV
Sbjct: 121 IQDWIERVAVIPVDGEEDPADVCVIELGGTIGDIESAPFIEALGQFSYRVGPGNFCLVHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVLNVVGEQKTKPTQHSV+GLRG GLTP+ILACRST L+DNVK KL+QFCHVP +
Sbjct: 181 SLVPVLNVVGEQKTKPTQHSVKGLRGLGLTPDILACRSTKPLEDNVKEKLAQFCHVPLEY 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
I TLYDVPNIW IPLLL+DQKAH AI KVLNL EP L EWTSRAE+CD LH PVRI
Sbjct: 241 IFTLYDVPNIWRIPLLLKDQKAHLAISKVLNLASILNEPSLGEWTSRAELCDNLHVPVRI 300
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
A+VGKYTGLSDAYLS+LKALLHASV RKKLV+DW+PACDLE TEKENPDAYKAAWKLL
Sbjct: 301 AVVGKYTGLSDAYLSVLKALLHASVACRKKLVVDWVPACDLEKETEKENPDAYKAAWKLL 360
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
KG DGILVPGGFG+RGV+GKILAAKYARE++IP+LGICLGMQ+AVIEFARSVL+L+DANS
Sbjct: 361 KGVDGILVPGGFGDRGVEGKILAAKYARENKIPFLGICLGMQIAVIEFARSVLSLQDANS 420
Query: 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 480
TEF+P TK+PC+IFMPEGSKTHMGGTMRLGSR++ F +KD KSAKLY N++F+DERHRHR
Sbjct: 421 TEFNPETKHPCIIFMPEGSKTHMGGTMRLGSRKSIFNVKDSKSAKLYENKSFVDERHRHR 480
Query: 481 YEVNPDMIARLENAGLSFTGKDETSQRMEV 510
YEVNPDM+ RLE AGLSF KDET +RME+
Sbjct: 481 YEVNPDMVERLEKAGLSFAAKDETGKRMEI 510
|
|
| TAIR|locus:2087765 emb2742 "embryo defective 2742" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2048 (726.0 bits), Expect = 7.0e-212, P = 7.0e-212
Identities = 385/510 (75%), Positives = 429/510 (84%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASSIG+LL+ACGLRVT IKIDPYLNTDAGTMSPFEH
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGLLLQACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 XXXXXXXXXXXXNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
NYERF+D LTRDNNITTGKIYQSVIDKERKGDYLG+TVQVVPH+TD
Sbjct: 61 LDDGGEVDLDLGNYERFLDSTLTRDNNITTGKIYQSVIDKERKGDYLGRTVQVVPHVTDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIERVA +PVDGKEGP DVCVIELGGTIGDIESMPFIEALGQFSY+VGPGNFCL+HV
Sbjct: 121 IQEWIERVANVPVDGKEGPPDVCVIELGGTIGDIESMPFIEALGQFSYKVGPGNFCLVHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVL+VVGEQKTKPTQHSVRGLR GLTPNILACRST AL++NVK KLSQFCHVPE N
Sbjct: 181 SLVPVLSVVGEQKTKPTQHSVRGLRSLGLTPNILACRSTKALEENVKTKLSQFCHVPEVN 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
I+TLYDVPNIWH+PLLLRDQKAHEAI + LNL K P L EWT+R +I D L +PVRI
Sbjct: 241 IVTLYDVPNIWHVPLLLRDQKAHEAILRELNLSNAIK-PDLTEWTARTKIYDTLQDPVRI 299
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
AMVGKYTGL+D+YLS+LKALLHASV KKLVI+W+ A DLE+ T +E PD +KAAW LL
Sbjct: 300 AMVGKYTGLTDSYLSVLKALLHASVACHKKLVIEWVAASDLEEITAQETPDVHKAAWDLL 359
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
KGADGILVPGGFG+RGVQGKILA KYARE+++P+LGICLGMQ+AV+EFARS+L DANS
Sbjct: 360 KGADGILVPGGFGDRGVQGKILATKYARENQVPFLGICLGMQLAVVEFARSILGFHDANS 419
Query: 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 480
TEF+P T +PC+IFMPEGS THMGGTMRLGSR+TYFQ+ DCKSAKLYGN F+DERHRHR
Sbjct: 420 TEFEPETSSPCIIFMPEGSTTHMGGTMRLGSRKTYFQVADCKSAKLYGNAKFVDERHRHR 479
Query: 481 YEVNPDMIARLENAGLSFTGKDETSQRMEV 510
YEVNPDMI+ +E AGLSF GKDET +RME+
Sbjct: 480 YEVNPDMISEIEKAGLSFVGKDETGRRMEI 509
|
|
| TAIR|locus:2120357 AT4G20320 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2038 (722.5 bits), Expect = 8.0e-211, P = 8.0e-211
Identities = 383/510 (75%), Positives = 428/510 (83%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASSIG++LK+CG RVT IKIDPYLN DAGTMSP EH
Sbjct: 1 MKYVVVSGGVVSGLGKGVTASSIGLILKSCGFRVTAIKIDPYLNIDAGTMSPIEHGEVYV 60
Query: 61 XXXXXXXXXXXXNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
NYERFMDIKLT +NNITTGK+Y+ V++KER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFMDIKLTSENNITTGKVYKHVLEKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ WIER A IPVDG+ GP DVCVIELGGTIGDIESMPFIEALGQFSYRVG NFCLIHV
Sbjct: 121 IQKWIERAARIPVDGQSGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGTDNFCLIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVLNVVGEQKTKPTQHSVR LRG GL+PNILACRST L+DNVK KLSQFCHVP +N
Sbjct: 181 SLVPVLNVVGEQKTKPTQHSVRDLRGLGLSPNILACRSTKPLEDNVKAKLSQFCHVPMEN 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
++TLYD PNIWHIPLLL++QKAHEAIF+VLNL+G KEP L+EW+ A++ D LH PVRI
Sbjct: 241 VVTLYDCPNIWHIPLLLKEQKAHEAIFRVLNLEGVAKEPALEEWSLMAKMTDKLHVPVRI 300
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
A+VGKYT L D+YLSI KALLHASV RKKL+IDWI A DLE +KENPDAYKAAWKLL
Sbjct: 301 AVVGKYTELLDSYLSIHKALLHASVARRKKLIIDWISASDLEQGAKKENPDAYKAAWKLL 360
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
KGADG+LVPGGFG+RGV+GK+LAAKYARE+RIPYLGICLGMQ+AVIE+AR++L L DANS
Sbjct: 361 KGADGVLVPGGFGSRGVEGKMLAAKYARENRIPYLGICLGMQLAVIEYARTILGLADANS 420
Query: 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 480
TE DPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF KD KSA+LYGN++F+DERHRHR
Sbjct: 421 TELDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFHSKDSKSARLYGNKSFVDERHRHR 480
Query: 481 YEVNPDMIARLENAGLSFTGKDETSQRMEV 510
YEVNP M+ R E++GL+FTGKDET QRME+
Sbjct: 481 YEVNPAMVPRFESSGLTFTGKDETGQRMEI 510
|
|
| TAIR|locus:2044707 AT2G34890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1893 (671.4 bits), Expect = 1.9e-195, P = 1.9e-195
Identities = 356/510 (69%), Positives = 416/510 (81%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASS+GVLL++CGLRVTCIKIDPYLN DAGT+SP+EH
Sbjct: 1 MKYVLVTGGVVSGLGKGITASSVGVLLQSCGLRVTCIKIDPYLNYDAGTISPYEHGEVFV 60
Query: 61 XXXXXXXXXXXXNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
NYERF+D LTRDNNIT GKI + V++KERKGDYLG+TVQ+VPH+TD
Sbjct: 61 LDDGSEVDLDLGNYERFLDTTLTRDNNITYGKIQRYVMEKERKGDYLGETVQIVPHVTDT 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
I++W+ERVAMIPVDGKEGP DVC+IELGGTIGD ES PF +AL Q SY VG NFCLIHV
Sbjct: 121 IREWVERVAMIPVDGKEGPPDVCIIELGGTIGDNESRPFADALSQLSYSVGRENFCLIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
+LVPVL+VVGEQKTKPTQHS++ LRG GLTPNI+ACRST AL++NVK KLS+FC+VP QN
Sbjct: 181 TLVPVLSVVGEQKTKPTQHSIKDLRGFGLTPNIIACRSTKALEENVKAKLSRFCYVPIQN 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
I +L DVPNIWHIPLLL++QKAHEAI KVLNL G KEP L++W S EI DGL+ PVRI
Sbjct: 241 IFSLCDVPNIWHIPLLLKEQKAHEAISKVLNLSGIAKEPSLEKWASMVEISDGLNVPVRI 300
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
A+VGKYT LSDAYLS+LKALLHASV KKL +D +P+CDLE ++E+ AY+AAWKLL
Sbjct: 301 AIVGKYTDLSDAYLSVLKALLHASVAFHKKLEVDMVPSCDLEKTKKQEDSRAYEAAWKLL 360
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
K A+G+L+PGGFG+RGV+G ILAAKYARE+ IP+LGICLGMQ+AVIEFARS+L L DANS
Sbjct: 361 KDANGVLLPGGFGDRGVEGMILAAKYARENNIPFLGICLGMQIAVIEFARSLLCLPDANS 420
Query: 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 480
TEF+P TK+PC+IFMPEGS THMGGTMRLGSRR YF K+ KSA+LYGN+ F+DERHRHR
Sbjct: 421 TEFEPETKHPCIIFMPEGSITHMGGTMRLGSRRAYFHDKESKSARLYGNKEFVDERHRHR 480
Query: 481 YEVNPDMIARLENAGLSFTGKDETSQRMEV 510
YEVNPDM+A LE AGLSF KDET +RME+
Sbjct: 481 YEVNPDMVASLEQAGLSFAAKDETGERMEI 510
|
|
| TAIR|locus:2132208 AT4G02120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1757 (623.6 bits), Expect = 4.8e-181, P = 4.8e-181
Identities = 338/513 (65%), Positives = 390/513 (76%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASSIGV+LKACGL VT IKIDPYLNTDAGTMSPFEH
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGVVLKACGLGVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 XXXXXXXXXXXXNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
NYERF+D+ LT+DNNITTGKIYQSV+DKERKGDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDVTLTKDNNITTGKIYQSVLDKERKGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
I+DWIE V++IPVDGKEG DVCVIELGGT+GDIESMPFIEAL Q S+ VGP NFCLIHV
Sbjct: 121 IKDWIESVSLIPVDGKEGQADVCVIELGGTVGDIESMPFIEALRQLSFSVGPDNFCLIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SL+PVL VVGEQKTKPTQH+VR LR GLTP+ LACRS L ++ K KLSQFCHV N
Sbjct: 181 SLIPVLGVVGEQKTKPTQHTVRELRALGLTPHFLACRSAQPLLESTKAKLSQFCHVAAAN 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
I+ ++DVPNIWH+PLLLR+Q AH +I K LNL P L W AE D L V+I
Sbjct: 241 ILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLTNVATAPDLDSWNKMAETFDNLTNHVQI 300
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
AMVGKY GL+D+YLS++KALLHA + K I+WI A DLED +EK P+A+ AAWK+L
Sbjct: 301 AMVGKYIGLTDSYLSVVKALLHACIACSLKPHIEWIAASDLEDESEKSTPEAHAAAWKIL 360
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
K A+ ILVPGGFG+RGV G +LAAKYARE++IPYLGICLGMQ+AVIEFARSVL L ANS
Sbjct: 361 KSAECILVPGGFGDRGVSGMVLAAKYARENKIPYLGICLGMQIAVIEFARSVLGLERANS 420
Query: 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 480
TEFD T +P VIFMPEGS+THMG TMRLGSRRT+ +D ++KLYG +++DERHRHR
Sbjct: 421 TEFDAQTSDPVVIFMPEGSRTHMGSTMRLGSRRTHLHNRDSLTSKLYGQVSYVDERHRHR 480
Query: 481 YEVNPDMIARLENAGLSFTGKDETSQRMEVWTF 513
YEVNP++ LE AGL F GKD+T +R+EV F
Sbjct: 481 YEVNPEVAQALEEAGLRFVGKDDTGKRVEVIEF 513
|
|
| DICTYBASE|DDB_G0280567 ctps "CTP synthase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1417 (503.9 bits), Expect = 5.1e-145, P = 5.1e-145
Identities = 291/529 (55%), Positives = 362/529 (68%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASS ++LK+ GLRVT IKIDPYLN DAGTMSPFEH
Sbjct: 1 MKYIVVTGGVLSGIGKGIIASSTAMILKSMGLRVTSIKIDPYLNIDAGTMSPFEHGEVFV 60
Query: 61 XXXXXXXXXXXXNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
NYERF+D+ L +DNNITTGKIY VI+KERKG YLGKTVQVVPHIT+E
Sbjct: 61 LDDGGEVDLDLGNYERFLDVNLGKDNNITTGKIYNLVIEKERKGQYLGKTVQVVPHITEE 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIERVA +PVDG +G DVCVIELGGT+GDIESMPF EAL QF +RVG NFCL+HV
Sbjct: 121 IQNWIERVAHLPVDGDKGTPDVCVIELGGTVGDIESMPFTEALRQFQFRVGVENFCLMHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVL VVGEQKTKP+Q S+R LR GL+P+ CRST L + K K+S FCHV N
Sbjct: 181 SLVPVLGVVGEQKTKPSQQSIRELRSLGLSPDFCLCRSTQPLTEETKKKISLFCHVAPDN 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQG---------TTKEPL-LKEWTSRAEI 290
+I ++DV NI+ +P+LL Q + + L L + P + W A+
Sbjct: 241 VIGVHDVSNIYRVPILLNQQNLPNLVLRRLQLNPKVDLSKTSPSESTPYWMASWKGLADR 300
Query: 291 CDGL-HE---PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE 346
D + +E P+RIAMVGKYTGL+DAYLS++KAL HAS+ + +K+VIDW+ A +LE T+
Sbjct: 301 MDKITNESLNPIRIAMVGKYTGLTDAYLSVIKALDHASMAIERKMVIDWVEASNLE--TQ 358
Query: 347 KENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVI 406
+ YK +W++L+GA GILVPGGFG+RG++G IL A YAR P+LGICLG+Q+AVI
Sbjct: 359 NSSTAEYKKSWEMLRGAHGILVPGGFGDRGIEGMILTANYARTSGKPFLGICLGLQIAVI 418
Query: 407 EFARSVLNLRDANSTEFDPNT--KNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSA 464
E+AR+V+ +ANS EF + KN V+FMPE SKTHMGGTMRLGSR T F D K +
Sbjct: 419 EYARNVMGWENANSEEFSASGSGKN-VVVFMPEVSKTHMGGTMRLGSRDTIFTDVDNKIS 477
Query: 465 KLYG-NRT--FIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
KLY ++ ++ERHRHRYEVNP+++ + GL F GKD T RME+
Sbjct: 478 KLYNVDKVGQAVEERHRHRYEVNPEVVDEIHAKGLHFVGKDTTGVRMEI 526
|
|
| UNIPROTKB|A0JNE9 CTPS "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1397 (496.8 bits), Expect = 6.8e-143, P = 6.8e-143
Identities = 276/512 (53%), Positives = 355/512 (69%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASS+G +LK+CGL VT IKIDPY+N DAGT SP+EH
Sbjct: 1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 XXXXXXXXXXXXNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
NYERF+DI+LT+DNN+TTGKIYQ VI+KERKGDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ R A+IPVD VCVIELGGT+GDIESMPFIEA QF ++V NFC IHV
Sbjct: 121 IQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CR + LD +VK K+S FCHV +
Sbjct: 181 SLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEP--LLKEWTSRAEICDGLHEPV 298
+I ++DV +I+ +PLLL +Q + + L+L ++P +L +W A+ D L E
Sbjct: 241 VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLP-IERQPRKMLMKWKEMADRYDRLLETC 299
Query: 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK 358
IA+VGKYT SD+Y S++KAL H+++ + KL I +I + DLE +T +E+P Y AW+
Sbjct: 300 SIALVGKYTKFSDSYASVIKALEHSALAINHKLEIKYIDSTDLEPSTLQEDPVRYHEAWQ 359
Query: 359 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418
L A G+LVPGGFG RG +GKI A +AR+ + P+LG+CLGMQ+AV+EF+R+VL +DA
Sbjct: 360 KLCSAHGVLVPGGFGVRGTEGKIQAISWARKQKKPFLGVCLGMQLAVVEFSRNVLGWQDA 419
Query: 419 NSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHR 478
NSTEFDPNT +P VI MPE + MGGTMRLG RRT FQ K+ KLYG+ +++ERHR
Sbjct: 420 NSTEFDPNTNHPVVIDMPEHNPGQMGGTMRLGKRRTLFQTKNSVMRKLYGDPDYLEERHR 479
Query: 479 HRYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
HR+EVNP + LE GL F G+D +RME+
Sbjct: 480 HRFEVNPVLKKCLEEQGLKFVGQDVEGERMEI 511
|
|
| UNIPROTKB|F1SF78 CTPS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1397 (496.8 bits), Expect = 6.8e-143, P = 6.8e-143
Identities = 277/512 (54%), Positives = 354/512 (69%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASS+G +LK+CGL VT IKIDPY+N DAGT SP+EH
Sbjct: 1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 XXXXXXXXXXXXNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
NYERF+DI+LT+DNN+TTGKIYQ VI+KERKGDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ R A+IPVD VCVIELGGT+GDIESMPFIEA QF ++V NFC IHV
Sbjct: 121 IQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CR + LD +VK K+S FCHV +
Sbjct: 181 SLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEP--LLKEWTSRAEICDGLHEPV 298
+I ++DV +I+ +PLLL +Q E + L+L ++P +L +W A+ D L E
Sbjct: 241 VICVHDVSSIYRVPLLLEEQGVVEYFLRRLDLP-IERQPRKMLMKWKEMADRYDRLLETC 299
Query: 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK 358
IA+VGKYT SD+Y S++KAL H+++ + KL I +I + DLE +T +E P Y AW+
Sbjct: 300 SIALVGKYTKFSDSYASVIKALEHSALAINHKLEIKYIDSTDLEPSTLQEEPVRYHEAWQ 359
Query: 359 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418
L A G+LVPGGFG RG +GKI A +AR+ + P+LG+CLGMQ+AV+EF+R+VL +DA
Sbjct: 360 KLCSAHGVLVPGGFGVRGTEGKIQAIAWARKQKKPFLGVCLGMQLAVVEFSRNVLGWQDA 419
Query: 419 NSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHR 478
NSTEFDPNT +P VI MPE + MGGTMRLG RRT FQ K+ KLYG+ +++ERHR
Sbjct: 420 NSTEFDPNTSHPVVIDMPEHNPGQMGGTMRLGKRRTLFQTKNSVMRKLYGDPDYLEERHR 479
Query: 479 HRYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
HR+EVNP + LE GL F G+D +RME+
Sbjct: 480 HRFEVNPVLKKCLEEQGLKFVGQDVGGERMEI 511
|
|
| UNIPROTKB|Q1RMS2 CTPS2 "CTP synthase 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1390 (494.4 bits), Expect = 3.7e-142, P = 3.7e-142
Identities = 273/512 (53%), Positives = 355/512 (69%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASSIG +LK+CGLRVT IKIDPY+N DAGT SP+EH
Sbjct: 1 MKYILVTGGVISGIGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 XXXXXXXXXXXXNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
NYERF+DI L +DNNITTGKIYQ VI+KER+GDYLGKTVQVVPHITD
Sbjct: 61 LNDGGEVDLDLGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDG-KEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIH 179
+Q+W+ AM+PVDG KE P +CVIELGGTIGDIE MPF+EA QF ++ NFC IH
Sbjct: 121 VQEWVMNQAMVPVDGHKEEP-QICVIELGGTIGDIEGMPFVEAFRQFQFKAKRENFCNIH 179
Query: 180 VSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQ 239
VSLVP + GEQKTKPTQ+SVR LRG GL+P+++ CRS+ ++ VK K+S FCHV +
Sbjct: 180 VSLVPQPSATGEQKTKPTQNSVRALRGLGLSPDLIVCRSSTPIEMAVKEKISMFCHVNPE 239
Query: 240 NIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQ-GTTKEPLLKEWTSRAEICDGLHEPV 298
+I ++DV + + +P+LL +Q + + L+L G + LL +W + A+ + L +
Sbjct: 240 QVICIHDVSSTYRVPVLLEEQGIIKYFKERLDLPIGDSASSLLSKWRNMADRYERLQKTC 299
Query: 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK 358
IA+VGKYT L D Y S+ KAL H+++ + KL + +I + DLE TE E+P + AW+
Sbjct: 300 SIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEQTTEVEDPVKFHEAWQ 359
Query: 359 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418
L ADG+LVPGGFG RG GK+ A +AR +IP+LG+CLGMQ+AVIEFAR+ LNL+DA
Sbjct: 360 KLCKADGVLVPGGFGIRGTLGKLQAISWARSRKIPFLGVCLGMQLAVIEFARNCLNLKDA 419
Query: 419 NSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHR 478
+STEF+PN + P VI MPE + ++GGTMRLG RRT F+ ++ KLYG+ FI+ERHR
Sbjct: 420 DSTEFEPNARVPVVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHR 479
Query: 479 HRYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
HRYEVNP +I++LE LSF G+D +RME+
Sbjct: 480 HRYEVNPSLISQLEQKDLSFVGQDVDGERMEI 511
|
|
| UNIPROTKB|E2QUQ3 CTPS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1389 (494.0 bits), Expect = 4.8e-142, P = 4.8e-142
Identities = 276/512 (53%), Positives = 353/512 (68%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASSIG +LK+CGL VT IKIDPY+N DAGT SP+EH
Sbjct: 1 MKYILVTGGVISGIGKGIIASSIGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 XXXXXXXXXXXXNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
NYERF+DI+LT+DNN+TTGKIYQ VI+KERKGDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ R A+IPVD VCVIELGGT+GDIESMPFIEA QF ++V NFC IHV
Sbjct: 121 IQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CR + LD +VK K+S FCHV +
Sbjct: 181 SLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEP--LLKEWTSRAEICDGLHEPV 298
+I ++DV +I+ +PLLL +Q + + L+L ++P +L +W A+ D L E
Sbjct: 241 VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLP-IERQPRKMLMKWKEMADRYDRLLETC 299
Query: 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK 358
IA+VGKYT SD+Y S++KAL H+++ + KL I +I + DLE +T +E P Y AW+
Sbjct: 300 SIALVGKYTKFSDSYASVIKALEHSALAINHKLEIKYIDSTDLEPSTLQEEPVRYHEAWQ 359
Query: 359 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418
L A G+LVPGGFG RG +GKI A +AR+ + P+LG+CLGMQ+AV+EF+R+VL +DA
Sbjct: 360 KLCSAHGVLVPGGFGVRGTEGKIQAIAWARKQKKPFLGVCLGMQLAVVEFSRNVLGWQDA 419
Query: 419 NSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHR 478
NSTEFDP T +P VI MPE + MGGTMRLG RRT FQ K+ KLYG+ +++ERHR
Sbjct: 420 NSTEFDPKTNHPVVIDMPEHNPGQMGGTMRLGKRRTLFQTKNSVMRKLYGDPDYLEERHR 479
Query: 479 HRYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
HR+EVNP + LE GL F G+D +RME+
Sbjct: 480 HRFEVNPVLKKCLEEQGLKFVGQDVGGERMEI 511
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| A6LQF6 | PYRG_CLOB8 | 6, ., 3, ., 4, ., 2 | 0.4823 | 0.9332 | 0.9123 | yes | no |
| C5A7F1 | PYRG_THEGJ | 6, ., 3, ., 4, ., 2 | 0.5185 | 0.9274 | 0.9118 | yes | no |
| B6J3W7 | PYRG_COXB2 | 6, ., 3, ., 4, ., 2 | 0.4882 | 0.9083 | 0.8576 | yes | no |
| Q6L1K7 | PYRG_PICTO | 6, ., 3, ., 4, ., 2 | 0.5283 | 0.9160 | 0.8988 | yes | no |
| A3DGR3 | PYRG_CLOTH | 6, ., 3, ., 4, ., 2 | 0.4951 | 0.9351 | 0.9040 | yes | no |
| A0B7H6 | PYRG_METTP | 6, ., 3, ., 4, ., 2 | 0.5098 | 0.9122 | 0.8754 | yes | no |
| A6UTE4 | PYRG_META3 | 6, ., 3, ., 4, ., 2 | 0.5159 | 0.9255 | 0.8948 | yes | no |
| Q7ZXP9 | PYG1B_XENLA | 6, ., 3, ., 4, ., 2 | 0.5870 | 0.9732 | 0.8629 | N/A | no |
| Q24MK9 | PYRG_DESHY | 6, ., 3, ., 4, ., 2 | 0.4756 | 0.9389 | 0.9248 | yes | no |
| P70698 | PYRG1_MOUSE | 6, ., 3, ., 4, ., 2 | 0.5929 | 0.9732 | 0.8629 | yes | no |
| A9N9V5 | PYRG_COXBR | 6, ., 3, ., 4, ., 2 | 0.4882 | 0.9083 | 0.8576 | yes | no |
| Q9HM27 | PYRG_THEAC | 6, ., 3, ., 4, ., 2 | 0.5078 | 0.9217 | 0.8862 | yes | no |
| A6ZQ59 | URA8_YEAS7 | 6, ., 3, ., 4, ., 2 | 0.5426 | 0.9751 | 0.8840 | N/A | no |
| B6YTF0 | PYRG_THEON | 6, ., 3, ., 4, ., 2 | 0.5142 | 0.9541 | 0.9380 | yes | no |
| O59456 | PYRG_PYRHO | 6, ., 3, ., 4, ., 2 | 0.5166 | 0.9274 | 0.9050 | yes | no |
| Q6PEI7 | PYRG1_DANRE | 6, ., 3, ., 4, ., 2 | 0.5851 | 0.9732 | 0.8629 | yes | no |
| Q8R720 | PYRG_THETN | 6, ., 3, ., 4, ., 2 | 0.5098 | 0.9332 | 0.9106 | yes | no |
| Q5JGF1 | PYRG_PYRKO | 6, ., 3, ., 4, ., 2 | 0.5225 | 0.9274 | 0.9118 | yes | no |
| Q8Q0L8 | PYRG_METMA | 6, ., 3, ., 4, ., 2 | 0.5214 | 0.9274 | 0.9101 | yes | no |
| Q465Q4 | PYRG_METBF | 6, ., 3, ., 4, ., 2 | 0.5088 | 0.9293 | 0.9119 | yes | no |
| P28274 | URA7_YEAST | 6, ., 3, ., 4, ., 2 | 0.5651 | 0.9694 | 0.8773 | yes | no |
| Q7RZV2 | PYRG_NEUCR | 6, ., 3, ., 4, ., 2 | 0.5347 | 0.9484 | 0.875 | N/A | no |
| Q12WH5 | PYRG_METBU | 6, ., 3, ., 4, ., 2 | 0.5205 | 0.9293 | 0.9119 | yes | no |
| Q2M197 | PYRG_DROPS | 6, ., 3, ., 4, ., 2 | 0.5680 | 0.9694 | 0.7888 | yes | no |
| Q5XHA8 | PYG1A_XENLA | 6, ., 3, ., 4, ., 2 | 0.5909 | 0.9732 | 0.8629 | N/A | no |
| Q9V1S2 | PYRG_PYRAB | 6, ., 3, ., 4, ., 2 | 0.5185 | 0.9274 | 0.9050 | yes | no |
| O74638 | PYRG_GIBZE | 6, ., 3, ., 4, ., 2 | 0.5366 | 0.9675 | 0.8741 | yes | no |
| Q8TKW5 | PYRG_METAC | 6, ., 3, ., 4, ., 2 | 0.5253 | 0.9274 | 0.9101 | yes | no |
| B6J4W8 | PYRG_COXB1 | 6, ., 3, ., 4, ., 2 | 0.4902 | 0.9083 | 0.8576 | yes | no |
| Q6GME1 | PYRG2_XENLA | 6, ., 3, ., 4, ., 2 | 0.5797 | 0.9675 | 0.8771 | N/A | no |
| O42644 | PYRG_SCHPO | 6, ., 3, ., 4, ., 2 | 0.5640 | 0.9618 | 0.84 | yes | no |
| Q6LYU4 | PYRG_METMP | 6, ., 3, ., 4, ., 2 | 0.5180 | 0.9503 | 0.9343 | yes | no |
| Q54V77 | PYRG_DICDI | 6, ., 3, ., 4, ., 2 | 0.5946 | 0.9694 | 0.8927 | yes | no |
| P17812 | PYRG1_HUMAN | 6, ., 3, ., 4, ., 2 | 0.5898 | 0.9713 | 0.8612 | yes | no |
| O29987 | PYRG_ARCFU | 6, ., 3, ., 4, ., 2 | 0.4990 | 0.9274 | 0.9135 | yes | no |
| A9KDH0 | PYRG_COXBN | 6, ., 3, ., 4, ., 2 | 0.4902 | 0.9083 | 0.8576 | yes | no |
| Q58574 | PYRG_METJA | 6, ., 3, ., 4, ., 2 | 0.5258 | 0.9561 | 0.9277 | yes | no |
| Q8TZY6 | PYRG_PYRFU | 6, ., 3, ., 4, ., 2 | 0.5224 | 0.9236 | 0.9013 | yes | no |
| Q9VUL1 | PYRG_DROME | 6, ., 3, ., 4, ., 2 | 0.5644 | 0.9713 | 0.8118 | yes | no |
| Q751L7 | PYRG_ASHGO | 6, ., 3, ., 4, ., 2 | 0.5670 | 0.9694 | 0.8819 | yes | no |
| Q8TYT7 | PYRG_METKA | 6, ., 3, ., 4, ., 2 | 0.4980 | 0.9370 | 0.9177 | yes | no |
| Q6FUD0 | PYRG_CANGA | 6, ., 3, ., 4, ., 2 | 0.5659 | 0.9713 | 0.8806 | yes | no |
| Q83B36 | PYRG_COXBU | 6, ., 3, ., 4, ., 2 | 0.4882 | 0.9083 | 0.8576 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_Genewise1_v1.C_LG_III0729 | CTP synthase (EC-6.3.4.2) (596 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| eugene3.00400106 | RecName- Full=Nucleoside diphosphate kinase; EC=2.7.4.6; (149 aa) | • | • | 0.921 | |||||||
| fgenesh4_pg.C_LG_XII000913 | hypothetical protein (152 aa) | • | • | 0.920 | |||||||
| gw1.II.1445.1 | SubName- Full=Putative uncharacterized protein; (164 aa) | • | • | 0.917 | |||||||
| gw1.I.7000.1 | hypothetical protein (1109 aa) | • | • | 0.910 | |||||||
| eugene3.00060510 | hypothetical protein (1168 aa) | • | • | 0.907 | |||||||
| estExt_Genewise1_v1.C_LG_XIII0788 | hypothetical protein (118 aa) | • | • | • | 0.907 | ||||||
| gw1.XV.93.1 | hypothetical protein (1112 aa) | • | • | • | 0.907 | ||||||
| fgenesh4_pg.C_LG_XII000210 | hypothetical protein (112 aa) | • | • | 0.907 | |||||||
| eugene3.00012667 | hypothetical protein (390 aa) | • | • | 0.906 | |||||||
| grail3.0008036902 | nucleoside-diphosphate kinase (EC-2.7.4.6) (237 aa) | • | • | 0.905 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 524 | |||
| PLN02327 | 557 | PLN02327, PLN02327, CTP synthase | 0.0 | |
| PRK05380 | 533 | PRK05380, pyrG, CTP synthetase; Validated | 0.0 | |
| COG0504 | 533 | COG0504, PyrG, CTP synthase (UTP-ammonia lyase) [N | 0.0 | |
| TIGR00337 | 525 | TIGR00337, PyrG, CTP synthase | 0.0 | |
| pfam06418 | 276 | pfam06418, CTP_synth_N, CTP synthase N-terminus | 0.0 | |
| cd03113 | 255 | cd03113, CTGs, CTP synthetase (CTPs) is a two-doma | 1e-153 | |
| cd01746 | 235 | cd01746, GATase1_CTP_Synthase, Type 1 glutamine am | 1e-112 | |
| pfam00117 | 186 | pfam00117, GATase, Glutamine amidotransferase clas | 9e-32 | |
| PRK06186 | 229 | PRK06186, PRK06186, hypothetical protein; Validate | 6e-28 | |
| cd01653 | 115 | cd01653, GATase1, Type 1 glutamine amidotransferas | 7e-10 | |
| cd03128 | 92 | cd03128, GAT_1, Type 1 glutamine amidotransferase | 1e-08 | |
| PRK13146 | 209 | PRK13146, hisH, imidazole glycerol phosphate synth | 2e-04 | |
| PRK00758 | 184 | PRK00758, PRK00758, GMP synthase subunit A; Valida | 0.002 | |
| COG0118 | 204 | COG0118, HisH, Glutamine amidotransferase [Amino a | 0.003 | |
| PRK13143 | 200 | PRK13143, hisH, imidazole glycerol phosphate synth | 0.004 |
| >gnl|CDD|215186 PLN02327, PLN02327, CTP synthase | Back alignment and domain information |
|---|
Score = 1142 bits (2956), Expect = 0.0
Identities = 433/510 (84%), Positives = 467/510 (91%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVT IKIDPYLNTDAGTMSPFEHGEVFV
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+D+ LTRDNNITTGKIYQSVI+KER+GDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDVTLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+WIERVA IPVDGKEGP DVCVIELGGT+GDIESMPFIEAL QFS+RVGPGNFCLIHV
Sbjct: 121 IQEWIERVAKIPVDGKEGPADVCVIELGGTVGDIESMPFIEALRQFSFRVGPGNFCLIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVPVL VVGEQKTKPTQHSVRGLR GLTP+ILACRST L++NVK KLSQFCHVP +N
Sbjct: 181 SLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAEN 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
I+ L+DV NIWH+PLLLRDQKAHEAI KVLNL +EP L+EWT+RAE CD L EPVRI
Sbjct: 241 ILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVAREPDLEEWTARAESCDNLTEPVRI 300
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
AMVGKYTGLSD+YLS+LKALLHASV +KLVIDW+ A DLED T KE PDAY AAWKLL
Sbjct: 301 AMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLL 360
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
KGADGILVPGGFG+RGV+GKILAAKYARE+++PYLGICLGMQ+AVIEFARSVL L+DANS
Sbjct: 361 KGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDANS 420
Query: 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHR 480
TEFDP T NPCVIFMPEGSKTHMGGTMRLGSRRTYFQ DCKSAKLYGN +F+DERHRHR
Sbjct: 421 TEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHR 480
Query: 481 YEVNPDMIARLENAGLSFTGKDETSQRMEV 510
YEVNP+M+ RLE AGLSF GKDET +RME+
Sbjct: 481 YEVNPEMVPRLEKAGLSFVGKDETGRRMEI 510
|
Length = 557 |
| >gnl|CDD|235437 PRK05380, pyrG, CTP synthetase; Validated | Back alignment and domain information |
|---|
Score = 789 bits (2041), Expect = 0.0
Identities = 272/514 (52%), Positives = 351/514 (68%), Gaps = 29/514 (5%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
KY+ VTGGVVS LGKG+TA+S+G LLKA GL+VT K+DPY+N D GTMSP++HGEVFV
Sbjct: 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFV 61
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
DDG E DLDLG+YERF+D LT+ NN+TTGKIY SVI+KER+GDYLGKTVQV+PHITDE
Sbjct: 62 TDDGAETDLDLGHYERFIDTNLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDE 121
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
I++ I DV ++E+GGT+GDIES+PF+EA+ Q +G N IH+
Sbjct: 122 IKERILAAG--------TDADVVIVEIGGTVGDIESLPFLEAIRQLRLELGRENVLFIHL 173
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
+LVP + GE KTKPTQHSV+ LR G+ P+IL CRS L + K K++ FC+VPE+
Sbjct: 174 TLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEA 233
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEP--- 297
+I+ DV +I+ +PLLL +Q + + + L L EP L EW E+ + L P
Sbjct: 234 VISAPDVDSIYEVPLLLHEQGLDDIVLERLGL--EAPEPDLSEWE---ELVERLKNPKGE 288
Query: 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW 357
V IA+VGKY L DAY S+++AL HA + K+ I WI + DLE+ E
Sbjct: 289 VTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAE--------- 339
Query: 358 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417
LLKG DGILVPGGFG RG++GKILA +YARE+ IP+LGICLGMQ+AVIEFAR+VL L D
Sbjct: 340 -LLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLGMQLAVIEFARNVLGLED 398
Query: 418 ANSTEFDPNTKNPCVIFMPE-GSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDER 476
ANSTEFDP+T +P + MPE + +GGTMRLG+ + +A++YG + I ER
Sbjct: 399 ANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLK-PGTLAAEIYG-KEEIYER 456
Query: 477 HRHRYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
HRHRYEVN +LE AGL F+G + +E+
Sbjct: 457 HRHRYEVNNKYREQLEKAGLVFSGTSPDGRLVEI 490
|
Length = 533 |
| >gnl|CDD|223578 COG0504, PyrG, CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 762 bits (1970), Expect = 0.0
Identities = 277/511 (54%), Positives = 347/511 (67%), Gaps = 22/511 (4%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
KY+ VTGGVVS LGKG+TA+S+G LLKA GL+VT K+DPYLN D GTMSP++HGEVFV
Sbjct: 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
DDG E DLDLG+YERF+D+ L++DNNITTGKIY VI+KER+GDYLGKTVQV+PHITDE
Sbjct: 61 TDDGAETDLDLGHYERFLDVNLSKDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDE 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
I+D I A + DV ++E+GGT+GDIES+PF+EA+ Q +G N IHV
Sbjct: 121 IKDRIREAA-------DSTADVVIVEIGGTVGDIESLPFLEAIRQLRLELGRENVLFIHV 173
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
+LVP + GE KTKPTQHSV+ LR G+ P+IL CRS L + + K++ FC+VPE+
Sbjct: 174 TLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCNVPEEA 233
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
+I+ DV +I+ +PLLL Q + I + LNL EP L EW + + V I
Sbjct: 234 VISAPDVESIYEVPLLLEKQGLDDYILERLNL--NAPEPDLSEWKDLVDKIKNPKKEVTI 291
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
A+VGKY L DAY S+++AL HA + L K+ I WI + DLE+ E L
Sbjct: 292 ALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAE----------LE 341
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
K DGILVPGGFG RGV+GKI A +YARE+ IP+LGICLGMQ+AVIEFAR+VL L ANS
Sbjct: 342 KLVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANS 401
Query: 421 TEFDPNTKNPCVIFMPEGSK-THMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479
TEFDP+TK P V MPE +GGTMRLG+ + +AKLYG + I ERHRH
Sbjct: 402 TEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLK-PGTLAAKLYG-KDEIYERHRH 459
Query: 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
RYEVN D +LE AGL F+G +E+
Sbjct: 460 RYEVNNDYRDQLEKAGLVFSGTSPDGGLVEI 490
|
Length = 533 |
| >gnl|CDD|232926 TIGR00337, PyrG, CTP synthase | Back alignment and domain information |
|---|
Score = 715 bits (1848), Expect = 0.0
Identities = 283/511 (55%), Positives = 350/511 (68%), Gaps = 22/511 (4%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+ VTGGVVS LGKG+TA+SIG LLKA GL+VT IKIDPY+N D GTMSP +HGEVFV
Sbjct: 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
DDG E DLDLG+YERF+D LTRDNNITTGKIY SVI+KERKGDYLGKTVQ++PHIT+E
Sbjct: 61 TDDGAETDLDLGHYERFLDTNLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNE 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
I+D I+RVA K DV ++E+GGT+GDIES+PF+EA+ QF VG N IHV
Sbjct: 121 IKDRIKRVA------KISGPDVVIVEIGGTVGDIESLPFLEAIRQFRNEVGRENVAFIHV 174
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
+LVP + GEQKTKPTQHSV+ LR G+ P+I+ CRS+ LD + K K++ FC V E+
Sbjct: 175 TLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSEPLDPSTKDKIALFCDVEEEA 234
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRI 300
+I +DV +I+ +PLLL Q + + + LNL E L EW E V I
Sbjct: 235 VINAHDVSSIYEVPLLLLKQGLDDYLCRRLNL--NCDEADLSEWEELVEKFINPKHEVTI 292
Query: 301 AMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360
+VGKY L D+YLS+++AL HA L K+ I WI + DLE+ + L
Sbjct: 293 GIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGA-----------EFL 341
Query: 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420
KG DGILVPGGFG RGV+GKILA KYARE+ IP+LGICLGMQ+AVIEFAR+VL L+ ANS
Sbjct: 342 KGVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANS 401
Query: 421 TEFDPNTKNPCVIFMPE-GSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479
TEFDP TK P V +PE + +GGTMRLG + + KLYG + ERHRH
Sbjct: 402 TEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILK-PGTLAFKLYGKEE-VYERHRH 459
Query: 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
RYEVN + +LEN GL +G + +E+
Sbjct: 460 RYEVNNEYREQLENKGLIVSGTSPDGRLVEI 490
|
CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7) [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 525 |
| >gnl|CDD|219017 pfam06418, CTP_synth_N, CTP synthase N-terminus | Back alignment and domain information |
|---|
Score = 526 bits (1357), Expect = 0.0
Identities = 171/284 (60%), Positives = 211/284 (74%), Gaps = 8/284 (2%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
KY+ VTGGVVS LGKG+TA+S+G LLK+ GL+VT KIDPYLN D GTMSP++HGEVFV
Sbjct: 1 TKYIFVTGGVVSSLGKGITAASLGRLLKSRGLKVTIQKIDPYLNVDPGTMSPYQHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
DDG E DLDLG+YERF+DI LT+DNNITTGKIY SVI+KER+GDYLGKTVQV+PHITDE
Sbjct: 61 TDDGAETDLDLGHYERFLDINLTKDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDE 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
I++ I RVA P DV ++E+GGT+GDIES+PF+EA+ QF VG N IHV
Sbjct: 121 IKERIRRVAAKP------GPDVVIVEIGGTVGDIESLPFLEAIRQFRLEVGRENVLFIHV 174
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
+LVP L GE KTKPTQHSV+ LR G+ P+IL CRS LD+ K K++ FC+VP++
Sbjct: 175 TLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLDEETKEKIALFCNVPKEA 234
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEW 284
+I+ DV +I+ +PLLL Q E I + L L KEP L +W
Sbjct: 235 VISAPDVESIYEVPLLLEKQGLDELILEKLGL--DPKEPDLSKW 276
|
This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyzes the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position. Length = 276 |
| >gnl|CDD|239387 cd03113, CTGs, CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain | Back alignment and domain information |
|---|
Score = 438 bits (1128), Expect = e-153
Identities = 157/259 (60%), Positives = 196/259 (75%), Gaps = 6/259 (2%)
Query: 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVL 61
KY+ VTGGVVS LGKG+TA+S+G LLKA GL+VT K+DPYLN D GTMSP++HGEVFV
Sbjct: 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVT 60
Query: 62 DDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEI 121
DDG E DLDLG+YERF+D L+RDNNITTGKIY SVI+KER+GDYLGKTVQV+PHITDEI
Sbjct: 61 DDGAETDLDLGHYERFLDTNLSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEI 120
Query: 122 QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVS 181
++ I RVA ++ DV ++E+GGT+GDIES+PF+EA+ Q +G N IHV+
Sbjct: 121 KERIRRVA------EKSGADVVIVEIGGTVGDIESLPFLEAIRQMKLELGRENVLFIHVT 174
Query: 182 LVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241
LVP L GE KTKPTQHSV+ LR G+ P+IL CRS L ++ K++ FC VP + +
Sbjct: 175 LVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEAV 234
Query: 242 ITLYDVPNIWHIPLLLRDQ 260
I+ DV NI+ +PLLL Q
Sbjct: 235 ISAPDVDNIYEVPLLLEQQ 253
|
The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain. Length = 255 |
| >gnl|CDD|153217 cd01746, GATase1_CTP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase | Back alignment and domain information |
|---|
Score = 332 bits (853), Expect = e-112
Identities = 121/214 (56%), Positives = 145/214 (67%), Gaps = 13/214 (6%)
Query: 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW 357
VRIA+VGKY L DAYLS+L+AL HA + L KL I WI + DLE+ A
Sbjct: 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEEN----------AE 50
Query: 358 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417
+ LKGADGILVPGGFG RGV+GKILA KYARE+ IP+LGICLGMQ+AVIEFAR+VL L D
Sbjct: 51 EALKGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPD 110
Query: 418 ANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDER 476
ANSTEFDP+T +P V MPE +GGTMRLG+ K A Y + ++ER
Sbjct: 111 ANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVIL--KPGTLAHKYYGKDEVEER 168
Query: 477 HRHRYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
HRHRYEVNP+ + LE AGL F+G D +E+
Sbjct: 169 HRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEI 202
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 235 |
| >gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 9e-32
Identities = 47/201 (23%), Positives = 66/201 (32%), Gaps = 52/201 (25%)
Query: 311 DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG 370
D S L A +L ++ + E + NPD GI++
Sbjct: 4 DNGDSFTYNLARALRELGVEVEVVPNDTPAEE--ILELNPD-------------GIIISP 48
Query: 371 GFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKN 429
G G+ G + G I A K RE++IP LGICLG Q+ + F V+
Sbjct: 49 GPGSPGALGGAIEAIKELRENKIPILGICLGHQLLALAFGGKVI---------------- 92
Query: 430 PCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIA 489
+ H G +G + YG R H Y V+PD
Sbjct: 93 ------KAKKEPHHGKNSPVGHDK----------GLFYGLPNVFIVRRYHSYAVDPDT-- 134
Query: 490 RLENAGLSFTGKDETSQRMEV 510
GL T E M +
Sbjct: 135 --LPDGLEVTAASENGGIMAI 153
|
Length = 186 |
| >gnl|CDD|180452 PRK06186, PRK06186, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 6e-28
Identities = 74/211 (35%), Positives = 101/211 (47%), Gaps = 29/211 (13%)
Query: 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAA 356
+RIA+VG Y A+ +I AL A+ L + +W+P ++ D +
Sbjct: 1 TLRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDPED---------- 50
Query: 357 WKLLKGADGI-LVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNL 415
L G DGI VPG R G + A ++ARE+ IP+LG C G Q A++E+AR+VL
Sbjct: 51 ---LAGFDGIWCVPGS-PYRNDDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGW 106
Query: 416 RDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL--GSRRTYFQIKDCKSAKLYGNRTFI 473
DA E DP P VI S G +RL GS A+ YG I
Sbjct: 107 ADAAHAETDPEGDRP-VIAPLSCSLVEKTGDIRLRPGSL----------IARAYG-TLEI 154
Query: 474 DERHRHRYEVNPDMIARLENAGLSFTGKDET 504
+E + RY VNP+ +A LE+ L TG DE
Sbjct: 155 EEGYHCRYGVNPEFVAALESGDLRVTGWDED 185
|
Length = 229 |
| >gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 7e-10
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 21/111 (18%)
Query: 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359
+A++ S L AL A + +D + ++ +
Sbjct: 1 VAVLLFPGFEELELASPLDALREAGAE------VDVVSPDGGPVESDVD----------- 43
Query: 360 LKGADGILVPGGFGNRGV----QGKILAAKYAREHRIPYLGICLGMQVAVI 406
L DG+++PGG G + + + A P LGICLG Q+ V+
Sbjct: 44 LDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLLVL 94
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115 |
| >gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 1e-08
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 21/108 (19%)
Query: 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359
+A++ S L AL A + +D + +
Sbjct: 1 VAVLLFGGSEELELASPLDALREAGAE------VDVVS-----------PDGGPVESDVD 43
Query: 360 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQV 403
L DG+++PGG G + + + A P LGICLG Q+
Sbjct: 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQL 91
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92 |
| >gnl|CDD|237290 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 14/59 (23%)
Query: 363 ADGILVPG---------GFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412
AD +++PG G G+ ++ A A P+LGIC+GMQ + F R +
Sbjct: 42 ADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGR--PFLGICVGMQ---LLFERGL 95
|
Length = 209 |
| >gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 13/60 (21%)
Query: 358 KLLKGADGILVPGG-----FGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412
++ DG+++ GG GN +Y +E +P LGICLG Q+ F V
Sbjct: 37 EIKAFEDGLILSGGPDIERAGN--------CPEYLKELDVPILGICLGHQLIAKAFGGEV 88
|
Length = 184 |
| >gnl|CDD|223196 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.003
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 22/83 (26%)
Query: 360 LKGADGILVPG---------GFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR 410
+ AD +++PG RG+ I A K A E P+LGICLGMQ + F R
Sbjct: 37 ILKADKLILPGVGAFGAAMANLRERGL---IEAIKEAVESGKPFLGICLGMQ---LLFER 90
Query: 411 SV-------LNLRDANSTEFDPN 426
S L L F
Sbjct: 91 SEEGGGVKGLGLIPGKVVRFPAE 113
|
Length = 204 |
| >gnl|CDD|237289 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.004
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 360 LKGADGILVPG--GFGN-----RGVQGKILAAKYAREHRIPYLGICLGMQV 403
+ ADGI++PG FG ++ IL A P+LGICLGMQ+
Sbjct: 36 ILDADGIVLPGVGAFGAAMENLSPLRDVILEA---ARSGKPFLGICLGMQL 83
|
Length = 200 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 524 | |||
| COG0504 | 533 | PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide | 100.0 | |
| PLN02327 | 557 | CTP synthase | 100.0 | |
| KOG2387 | 585 | consensus CTP synthase (UTP-ammonia lyase) [Nucleo | 100.0 | |
| TIGR00337 | 525 | PyrG CTP synthase. CTP synthase is involved in pyr | 100.0 | |
| PRK05380 | 533 | pyrG CTP synthetase; Validated | 100.0 | |
| PF06418 | 276 | CTP_synth_N: CTP synthase N-terminus; InterPro: IP | 100.0 | |
| cd03113 | 255 | CTGs CTP synthetase (CTPs) is a two-domain protein | 100.0 | |
| PRK06186 | 229 | hypothetical protein; Validated | 100.0 | |
| COG0505 | 368 | CarA Carbamoylphosphate synthase small subunit [Am | 100.0 | |
| cd01746 | 235 | GATase1_CTP_Synthase Type 1 glutamine amidotransfe | 100.0 | |
| TIGR01368 | 358 | CPSaseIIsmall carbamoyl-phosphate synthase, small | 100.0 | |
| PRK12564 | 360 | carbamoyl phosphate synthase small subunit; Review | 100.0 | |
| PLN02771 | 415 | carbamoyl-phosphate synthase (glutamine-hydrolyzin | 100.0 | |
| PRK12838 | 354 | carbamoyl phosphate synthase small subunit; Review | 100.0 | |
| CHL00197 | 382 | carA carbamoyl-phosphate synthase arginine-specifi | 100.0 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 99.97 | |
| COG0118 | 204 | HisH Glutamine amidotransferase [Amino acid transp | 99.85 | |
| cd01744 | 178 | GATase1_CPSase Small chain of the glutamine-depend | 99.83 | |
| PF00117 | 192 | GATase: Glutamine amidotransferase class-I; InterP | 99.82 | |
| PRK08007 | 187 | para-aminobenzoate synthase component II; Provisio | 99.81 | |
| TIGR00566 | 188 | trpG_papA glutamine amidotransferase of anthranila | 99.8 | |
| COG2071 | 243 | Predicted glutamine amidotransferases [General fun | 99.78 | |
| PRK07765 | 214 | para-aminobenzoate synthase component II; Provisio | 99.77 | |
| COG0512 | 191 | PabA Anthranilate/para-aminobenzoate synthases com | 99.77 | |
| PRK06895 | 190 | putative anthranilate synthase component II; Provi | 99.76 | |
| PRK07649 | 195 | para-aminobenzoate/anthranilate synthase glutamine | 99.76 | |
| PLN02335 | 222 | anthranilate synthase | 99.76 | |
| PRK05670 | 189 | anthranilate synthase component II; Provisional | 99.75 | |
| CHL00101 | 190 | trpG anthranilate synthase component 2 | 99.75 | |
| PRK11366 | 254 | puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; | 99.73 | |
| TIGR00888 | 188 | guaA_Nterm GMP synthase (glutamine-hydrolyzing), N | 99.73 | |
| PF07722 | 217 | Peptidase_C26: Peptidase C26; InterPro: IPR011697 | 99.73 | |
| PRK06774 | 191 | para-aminobenzoate synthase component II; Provisio | 99.72 | |
| cd01743 | 184 | GATase1_Anthranilate_Synthase Type 1 glutamine ami | 99.71 | |
| PRK08857 | 193 | para-aminobenzoate synthase component II; Provisio | 99.7 | |
| cd01742 | 181 | GATase1_GMP_Synthase Type 1 glutamine amidotransfe | 99.69 | |
| TIGR01815 | 717 | TrpE-clade3 anthranilate synthase, alpha proteobac | 99.67 | |
| PRK13566 | 720 | anthranilate synthase; Provisional | 99.65 | |
| TIGR01823 | 742 | PabB-fungal aminodeoxychorismate synthase, fungal | 99.65 | |
| PRK00758 | 184 | GMP synthase subunit A; Validated | 99.64 | |
| PLN02347 | 536 | GMP synthetase | 99.62 | |
| PRK05637 | 208 | anthranilate synthase component II; Provisional | 99.61 | |
| PRK14607 | 534 | bifunctional glutamine amidotransferase/anthranila | 99.61 | |
| PRK13170 | 196 | hisH imidazole glycerol phosphate synthase subunit | 99.61 | |
| CHL00188 | 210 | hisH imidazole glycerol phosphate synthase subunit | 99.6 | |
| PRK14004 | 210 | hisH imidazole glycerol phosphate synthase subunit | 99.56 | |
| cd01745 | 189 | GATase1_2 Subgroup of proteins having the Type 1 g | 99.56 | |
| PRK13142 | 192 | hisH imidazole glycerol phosphate synthase subunit | 99.54 | |
| PRK00074 | 511 | guaA GMP synthase; Reviewed | 99.53 | |
| PRK13152 | 201 | hisH imidazole glycerol phosphate synthase subunit | 99.52 | |
| PRK13146 | 209 | hisH imidazole glycerol phosphate synthase subunit | 99.52 | |
| PRK03619 | 219 | phosphoribosylformylglycinamidine synthase I; Prov | 99.5 | |
| PRK13141 | 205 | hisH imidazole glycerol phosphate synthase subunit | 99.5 | |
| cd01747 | 273 | GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot | 99.49 | |
| PRK09065 | 237 | glutamine amidotransferase; Provisional | 99.49 | |
| PLN02889 | 918 | oxo-acid-lyase/anthranilate synthase | 99.47 | |
| cd01741 | 188 | GATase1_1 Subgroup of proteins having the Type 1 g | 99.46 | |
| PRK13181 | 199 | hisH imidazole glycerol phosphate synthase subunit | 99.46 | |
| PRK06490 | 239 | glutamine amidotransferase; Provisional | 99.44 | |
| PRK09522 | 531 | bifunctional glutamine amidotransferase/anthranila | 99.43 | |
| cd01748 | 198 | GATase1_IGP_Synthase Type 1 glutamine amidotransfe | 99.43 | |
| PRK13143 | 200 | hisH imidazole glycerol phosphate synthase subunit | 99.42 | |
| PLN02832 | 248 | glutamine amidotransferase subunit of pyridoxal 5' | 99.4 | |
| PRK07053 | 234 | glutamine amidotransferase; Provisional | 99.39 | |
| TIGR01737 | 227 | FGAM_synth_I phosphoribosylformylglycinamidine syn | 99.37 | |
| PRK07567 | 242 | glutamine amidotransferase; Provisional | 99.36 | |
| PRK01077 | 451 | cobyrinic acid a,c-diamide synthase; Validated | 99.35 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 99.34 | |
| KOG1224 | 767 | consensus Para-aminobenzoate (PABA) synthase ABZ1 | 99.33 | |
| TIGR01855 | 196 | IMP_synth_hisH imidazole glycerol phosphate syntha | 99.3 | |
| PRK05665 | 240 | amidotransferase; Provisional | 99.28 | |
| TIGR00379 | 449 | cobB cobyrinic acid a,c-diamide synthase. This mod | 99.25 | |
| PRK13527 | 200 | glutamine amidotransferase subunit PdxT; Provision | 99.24 | |
| PRK13525 | 189 | glutamine amidotransferase subunit PdxT; Provision | 99.22 | |
| COG0518 | 198 | GuaA GMP synthase - Glutamine amidotransferase dom | 99.22 | |
| KOG0026 | 223 | consensus Anthranilate synthase, beta chain [Amino | 99.21 | |
| PRK00784 | 488 | cobyric acid synthase; Provisional | 99.21 | |
| TIGR00313 | 475 | cobQ cobyric acid synthase CobQ. | 99.17 | |
| PRK08250 | 235 | glutamine amidotransferase; Provisional | 99.12 | |
| TIGR03800 | 184 | PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl | 99.12 | |
| PRK13896 | 433 | cobyrinic acid a,c-diamide synthase; Provisional | 99.01 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 99.0 | |
| PF00988 | 131 | CPSase_sm_chain: Carbamoyl-phosphate synthase smal | 98.97 | |
| cd01740 | 238 | GATase1_FGAR_AT Type 1 glutamine amidotransferase | 98.89 | |
| PRK13526 | 179 | glutamine amidotransferase subunit PdxT; Provision | 98.83 | |
| PRK01175 | 261 | phosphoribosylformylglycinamidine synthase I; Prov | 98.72 | |
| cd01750 | 194 | GATase1_CobQ Type 1 glutamine amidotransferase (GA | 98.69 | |
| cd01749 | 183 | GATase1_PB Glutamine Amidotransferase (GATase_I) i | 98.57 | |
| COG0047 | 231 | PurL Phosphoribosylformylglycinamidine (FGAM) synt | 98.53 | |
| cd03130 | 198 | GATase1_CobB Type 1 glutamine amidotransferase (GA | 98.45 | |
| KOG1622 | 552 | consensus GMP synthase [Nucleotide transport and m | 98.45 | |
| PRK05368 | 302 | homoserine O-succinyltransferase; Provisional | 98.39 | |
| PRK06278 | 476 | cobyrinic acid a,c-diamide synthase; Validated | 98.37 | |
| KOG3179 | 245 | consensus Predicted glutamine synthetase [Nucleoti | 98.09 | |
| PF13507 | 259 | GATase_5: CobB/CobQ-like glutamine amidotransferas | 98.06 | |
| cd01653 | 115 | GATase1 Type 1 glutamine amidotransferase (GATase1 | 97.96 | |
| PRK05297 | 1290 | phosphoribosylformylglycinamidine synthase; Provis | 97.94 | |
| cd03144 | 114 | GATase1_ScBLP_like Type 1 glutamine amidotransfera | 97.93 | |
| COG0311 | 194 | PDX2 Predicted glutamine amidotransferase involved | 97.92 | |
| TIGR01857 | 1239 | FGAM-synthase phosphoribosylformylglycinamidine sy | 97.9 | |
| cd03146 | 212 | GAT1_Peptidase_E Type 1 glutamine amidotransferase | 97.8 | |
| PLN03206 | 1307 | phosphoribosylformylglycinamidine synthase; Provis | 97.77 | |
| PF07685 | 158 | GATase_3: CobB/CobQ-like glutamine amidotransferas | 97.72 | |
| COG1797 | 451 | CobB Cobyrinic acid a,c-diamide synthase [Coenzyme | 97.67 | |
| TIGR01735 | 1310 | FGAM_synt phosphoribosylformylglycinamidine syntha | 97.62 | |
| PF01174 | 188 | SNO: SNO glutamine amidotransferase family; InterP | 97.61 | |
| cd03128 | 92 | GAT_1 Type 1 glutamine amidotransferase (GATase1)- | 97.56 | |
| PHA03366 | 1304 | FGAM-synthase; Provisional | 96.7 | |
| cd03131 | 175 | GATase1_HTS Type 1 glutamine amidotransferase (GAT | 96.64 | |
| PRK11780 | 217 | isoprenoid biosynthesis protein with amidotransfer | 96.5 | |
| cd03133 | 213 | GATase1_ES1 Type 1 glutamine amidotransferase (GAT | 96.46 | |
| PRK05282 | 233 | (alpha)-aspartyl dipeptidase; Validated | 96.36 | |
| cd03169 | 180 | GATase1_PfpI_1 Type 1 glutamine amidotransferase ( | 96.32 | |
| TIGR01739 | 1202 | tegu_FGAM_synt herpesvirus tegument protein/v-FGAM | 96.3 | |
| KOG3210 | 226 | consensus Imidazoleglycerol-phosphate synthase sub | 96.26 | |
| TIGR01382 | 166 | PfpI intracellular protease, PfpI family. The memb | 96.26 | |
| KOG1559 | 340 | consensus Gamma-glutamyl hydrolase [Coenzyme trans | 96.21 | |
| cd03134 | 165 | GATase1_PfpI_like A type 1 glutamine amidotransfer | 95.65 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 95.54 | |
| PRK00090 | 222 | bioD dithiobiotin synthetase; Reviewed | 95.54 | |
| PRK12374 | 231 | putative dithiobiotin synthetase; Provisional | 95.49 | |
| COG1492 | 486 | CobQ Cobyric acid synthase [Coenzyme metabolism] | 95.39 | |
| cd03132 | 142 | GATase1_catalase Type 1 glutamine amidotransferase | 95.24 | |
| PRK13768 | 253 | GTPase; Provisional | 94.93 | |
| cd03147 | 231 | GATase1_Ydr533c_like Type 1 glutamine amidotransfe | 94.82 | |
| COG0693 | 188 | ThiJ Putative intracellular protease/amidase [Gene | 94.75 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 94.49 | |
| PF01965 | 147 | DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T | 94.3 | |
| cd03140 | 170 | GATase1_PfpI_3 Type 1 glutamine amidotransferase ( | 94.28 | |
| PRK04155 | 287 | chaperone protein HchA; Provisional | 94.24 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 94.01 | |
| cd03137 | 187 | GATase1_AraC_1 AraC transcriptional regulators hav | 94.01 | |
| cd03141 | 221 | GATase1_Hsp31_like Type 1 glutamine amidotransfera | 93.63 | |
| cd03148 | 232 | GATase1_EcHsp31_like Type 1 glutamine amidotransfe | 93.55 | |
| cd03135 | 163 | GATase1_DJ-1 Type 1 glutamine amidotransferase (GA | 93.43 | |
| PRK05632 | 684 | phosphate acetyltransferase; Reviewed | 93.24 | |
| cd03129 | 210 | GAT1_Peptidase_E_like Type 1 glutamine amidotransf | 93.2 | |
| PF04204 | 298 | HTS: Homoserine O-succinyltransferase ; InterPro: | 93.13 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 93.12 | |
| TIGR01968 | 261 | minD_bact septum site-determining protein MinD. Th | 92.93 | |
| PRK11574 | 196 | oxidative-stress-resistance chaperone; Provisional | 92.91 | |
| cd03138 | 195 | GATase1_AraC_2 AraC transcriptional regulators hav | 92.91 | |
| COG3442 | 250 | Predicted glutamine amidotransferase [General func | 92.86 | |
| cd00550 | 254 | ArsA_ATPase Oxyanion-translocating ATPase (ArsA). | 92.45 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 92.35 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 92.2 | |
| TIGR01383 | 179 | not_thiJ DJ-1 family protein. This model represent | 92.09 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 91.94 | |
| cd03136 | 185 | GATase1_AraC_ArgR_like AraC transcriptional regula | 91.92 | |
| cd03139 | 183 | GATase1_PfpI_2 Type 1 glutamine amidotransferase ( | 91.75 | |
| TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein Y | 91.19 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 91.08 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 91.01 | |
| PF13278 | 166 | DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M | 90.88 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 90.6 | |
| TIGR01001 | 300 | metA homoserine O-succinyltransferase. The apparen | 90.4 | |
| PF09825 | 367 | BPL_N: Biotin-protein ligase, N terminal; InterPro | 90.39 | |
| PRK11249 | 752 | katE hydroperoxidase II; Provisional | 90.27 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 89.31 | |
| PRK10818 | 270 | cell division inhibitor MinD; Provisional | 88.9 | |
| TIGR00347 | 166 | bioD dethiobiotin synthase. Dethiobiotin synthase | 88.8 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 87.98 | |
| PRK09393 | 322 | ftrA transcriptional activator FtrA; Provisional | 87.88 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 87.75 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 86.99 | |
| PRK14494 | 229 | putative molybdopterin-guanine dinucleotide biosyn | 86.74 | |
| COG0132 | 223 | BioD Dethiobiotin synthetase [Coenzyme metabolism] | 86.28 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 86.23 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 86.16 | |
| TIGR02069 | 250 | cyanophycinase cyanophycinase. This model describe | 85.78 | |
| PF13500 | 199 | AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R | 85.77 | |
| PRK14493 | 274 | putative bifunctional molybdopterin-guanine dinucl | 84.56 | |
| CHL00072 | 290 | chlL photochlorophyllide reductase subunit L | 84.44 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 83.42 | |
| cd02035 | 217 | ArsA ArsA ATPase functionas as an efflux pump loca | 83.15 | |
| COG2894 | 272 | MinD Septum formation inhibitor-activating ATPase | 82.88 | |
| PRK13232 | 273 | nifH nitrogenase reductase; Reviewed | 82.59 | |
| cd02029 | 277 | PRK_like Phosphoribulokinase-like (PRK-like) is a | 82.06 | |
| cd02040 | 270 | NifH NifH gene encodes component II (iron protein) | 81.49 | |
| COG0003 | 322 | ArsA Predicted ATPase involved in chromosome parti | 81.48 | |
| PRK13230 | 279 | nitrogenase reductase-like protein; Reviewed | 81.34 |
| >COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-203 Score=1578.57 Aligned_cols=501 Identities=55% Similarity=0.901 Sum_probs=483.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+|||||||+|||||+|||+|||+||++|||||||||||||||||||||||||||+||||||||||||+|+
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfVtdDG~EtDLDLGhYERF~~~ 80 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDV 80 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceecCCCCCCcccCceEEECCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+||++||+||||||++||+|||+|||||+|||||||||||||+||+++|+ .. +||||||||||||||||+|||
T Consensus 81 ~l~~~~niTtGkiY~~Vi~kER~GdYLG~TVQvIPHiT~eIk~~I~~~a~------~~-~DvvivEIGGTVGDIEslpFl 153 (533)
T COG0504 81 NLSKDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKDRIREAAD------ST-ADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CccccCCccccHHHHHHHHHHhcCCccCceeEECCCcchHHHHHHHHhcC------CC-CCEEEEEeCCceecccccHHH
Confidence 99999999999999999999999999999999999999999999999995 22 999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||.++|++|++|||+|||||+.++||+||||||||||+|||+|||||++||||+.+++.+.|+||||||+|++++
T Consensus 154 EAiRQ~~~e~g~~n~~fiH~tlvpyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlfc~V~~~~ 233 (533)
T COG0504 154 EAIRQLRLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHhhhCcccEEEEEEecceeecccCccCCCCchHHHHHHHhcCCCcceEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHH
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL 320 (524)
||+++|++|+|++|+.|++||+++.++++|+|+ .+.+++++|+++++++.++.++++||+||||+++.|||+|+.+||
T Consensus 234 Vi~~~Dv~siY~vPl~l~~qgl~~~i~~~l~l~--~~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l~DaY~Sv~EAL 311 (533)
T COG0504 234 VISAPDVESIYEVPLLLEKQGLDDYILERLNLN--APEPDLSEWKDLVDKIKNPKKEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred eEecccHHHHHHhHHHHHHcchHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCCCceEEEEEECCcCchhHHHHHHHHH
Confidence 999999999999999999999999999999997 467799999999999999877899999999999999999999999
Q ss_pred HHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhcc-CCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhH
Q 009814 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (524)
Q Consensus 321 ~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~-~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICL 399 (524)
+|+|++..+++++.||+|++++.++. +.+. .+|||++|||||.||++|+|.|++|||||++|||||||
T Consensus 312 ~hag~~~~~~v~i~wIdse~le~~~~-----------~~~~~~~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGICl 380 (533)
T COG0504 312 KHAGIALGVKVNIKWIDSEDLEEENA-----------AELEKLVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICL 380 (533)
T ss_pred HhhhhhcCCceeeEEEccccccccch-----------hhhhhcCCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEch
Confidence 99999999999999999999986542 1222 29999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCC-cCCCCCcccccceeeEeccCCcccccccCCcceeeeeec
Q 009814 400 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHR 478 (524)
Q Consensus 400 GmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~-~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhr 478 (524)
|||++++|||||++|+++|||+||+|.+++||+++|+|+. ...+|||||||+|+|.+++| |+++++|+ +++|.||||
T Consensus 381 GmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~g-T~a~~lY~-~~~v~ERHR 458 (533)
T COG0504 381 GMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPG-TLAAKLYG-KDEIYERHR 458 (533)
T ss_pred hHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCC-cHHHHHhC-CCeeeeecc
Confidence 9999999999999999999999999999999999999974 67799999999999999999 99999996 689999999
Q ss_pred cccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEE-Eec
Q 009814 479 HRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVL-LNY 523 (524)
Q Consensus 479 HrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~-vqy 523 (524)
|||||||+|++.++++||+|+|+++||.+||++|+++||||. +||
T Consensus 459 HRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~Qf 504 (533)
T COG0504 459 HRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQF 504 (533)
T ss_pred chhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcc
Confidence 999999999999999999999999999999999999999985 565
|
|
| >PLN02327 CTP synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-201 Score=1601.26 Aligned_cols=522 Identities=83% Similarity=1.318 Sum_probs=507.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+|||||||+|||||+|||+|||+|++||||||||||||||||||||||||||||+||||||||||||||+
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCCCCCCCcccceEEEccCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+||++||+||||||++||+|||+|+|||||||||||||||||+||+++|++|||++..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeI~~~i~~~~~~~~~~~~~~~dv~i~EiGGTVGDiEs~pfl 160 (557)
T PLN02327 81 TLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAKIPVDGKEGPADVCVIELGGTVGDIESMPFI 160 (557)
T ss_pred ccccccCCCcHHHHHHHHHHhhcCCcCCCeeEECCCcHHHHHHHHHHhccCCcccCCCCCCEEEEEeCceeecccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||+++|++|||||||||||||+++||+||||||||||+|||.|||||+|||||+.+++++.|+||||||+|++++
T Consensus 161 EA~rQ~~~~~g~~n~~~iHvt~vp~l~~~gE~KTKPtQhsvk~Lr~~Gi~pd~l~~Rs~~~l~~~~~~Kia~fc~v~~~~ 240 (557)
T PLN02327 161 EALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAEN 240 (557)
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHH
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL 320 (524)
||+++|++|+|+||++|++||+++.|+++|+|+...+.+++++|+++++++.++++.++||+||||+++.|||.||.+||
T Consensus 241 Vi~~~d~~~iY~vPl~l~~q~l~~~i~~~l~l~~~~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~l~DAY~Si~eAL 320 (557)
T PLN02327 241 ILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVAREPDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYLSVLKAL 320 (557)
T ss_pred EEEcCCCchHhhhhHHHHHCCcHHHHHHHcCCCCCCCCCChHHHHHHHHHHhCCCCceEEEEEecccCCcHhHHHHHHHH
Confidence 99999999999999999999999999999999721245679999999999999888899999999999999999999999
Q ss_pred HHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHh
Q 009814 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (524)
Q Consensus 321 ~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLG 400 (524)
+|||+++++++++.||+++++++.+...+|++|+.+|+.|.++|||++|||||+|+.+|++.++++||++++|+||||||
T Consensus 321 ~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClG 400 (557)
T PLN02327 321 LHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLG 400 (557)
T ss_pred HHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHH
Confidence 99999999999999999999987776678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec-cCCcccccccCCcceeeeeecc
Q 009814 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRH 479 (524)
Q Consensus 401 mQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~-~g~s~~~~iYg~~~~I~erhrH 479 (524)
||+|++|||||++||++|+|+||++++++||+++||+++...+|||||||.|+|.+. ++ |+++++|+....|+|||||
T Consensus 401 mQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~-S~l~~iYg~~~~VnerHrH 479 (557)
T PLN02327 401 MQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPD-CKSAKLYGNVSFVDERHRH 479 (557)
T ss_pred HHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECCCcccccCCCC-CHHHHHhCCccceeeeecc
Confidence 999999999999999999999999999999999999988889999999999999998 78 9999999744458999999
Q ss_pred ccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEE-EEec
Q 009814 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAV-LLNY 523 (524)
Q Consensus 480 rYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f-~vqy 523 (524)
||+||+++++.+++.||+++|+++||.+||++|+++|||| .|||
T Consensus 480 RYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQf 524 (557)
T PLN02327 480 RYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQF 524 (557)
T ss_pred ccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEc
Confidence 9999999999998899999999999989999999999999 9998
|
|
| >KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-201 Score=1529.77 Aligned_cols=523 Identities=70% Similarity=1.144 Sum_probs=512.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||+|||||+||+||||+|||+|.|||++|++||.||||||||+|||||||||||||||+|||+|+||||||||||||+
T Consensus 1 MKYVlVtGGVISGiGKGv~aSSiG~lLKs~Gl~VTsIKIDPYlN~DAGTmSPyEHGEVfVLDDGgEvDLDLGNYERfldi 80 (585)
T KOG2387|consen 1 MKYVLVTGGVISGIGKGIIASSIGVLLKSCGLRVTSIKIDPYLNIDAGTMSPYEHGEVFVLDDGGEVDLDLGNYERFLDI 80 (585)
T ss_pred CeEEEEeCcEeecccCceeehhHHHHHHhcCceeEEEEeccceeccCcccCccccceEEEecCCceecccccchhhhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+||++|||||||||+.||+|||+||||||||||||||||+|++||+++|++|||+++.+|||||||+||||||||||||+
T Consensus 81 ~Lt~dNNITtGKiy~~Vi~kER~GdYLGKTVQvvPHiTdaIq~WiervA~iPVdg~~~~pdVCvIELGGTvGDiEs~pfv 160 (585)
T KOG2387|consen 81 TLTRDNNITTGKIYQHVIEKERRGDYLGKTVQVVPHITDAIQDWIERVARIPVDGTGGEPDVCVIELGGTVGDIESMPFV 160 (585)
T ss_pred eeeccCCcccchHHHHHHhhhhccccccceeEeccchhHHHHHHHHHHhcCCcCCCCCCCCEEEEEcCceeccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+|||++++|++|||+|||||||.+++.|||||||||||||+||++|+.||+|+|||.+|+..++|+|||+||+|++++
T Consensus 161 eAl~qFq~~vg~~Nf~~iHVsLVp~l~~~gEqKTKPtQ~svr~LR~lGL~Pd~iaCRs~~~l~~~vk~Kis~FChV~~eq 240 (585)
T KOG2387|consen 161 EALRQFQFKVGRENFCLIHVSLVPVLSVTGEQKTKPTQHSVRDLRGLGLSPDLIACRSTKPLEMSVKEKISMFCHVGPEQ 240 (585)
T ss_pred HHHHhheecccCCcEEEEEEEEEEeccccccccCcchHHHHHHHHhcCCCcceEEEccCCCCCHHHHHHHhhhcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCC-hhhHHHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHH
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTK-EPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKA 319 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~-~~~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~a 319 (524)
|++++||+++|.+|++|++||+.+++.++|+|+.... .+.|.+|+.++++.++....++||+||||+.+.|+|.|+.+|
T Consensus 241 V~~~hDv~siyhvPllL~~q~~~e~l~~~L~L~~~~~~~~~l~~W~~~~~~~d~~~~~V~IalVGKYt~l~DsY~Sv~KA 320 (585)
T KOG2387|consen 241 VVGLHDVSSIYHVPLLLEEQGIVEYLNRRLGLSIISSERPMLDKWSNMAERYDDLQVPVRIALVGKYTKLSDSYLSVVKA 320 (585)
T ss_pred eeeeccCcchhcchHHHhhhhHHHHHHHHhCCCccccchhhHHHHHHHHHhhhcccCcEEEEEEeccccchHHHHHHHHH
Confidence 9999999999999999999999999999999975212 368999999999999988899999999999999999999999
Q ss_pred HHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhH
Q 009814 320 LLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (524)
Q Consensus 320 L~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICL 399 (524)
|.|+++++..+++|.||++.+||+.....+|.+||+||+.++.+|||++|||||+||++|+|.|++|||||++|||||||
T Consensus 321 L~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCL 400 (585)
T KOG2387|consen 321 LEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICL 400 (585)
T ss_pred HHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeeh
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeecc
Q 009814 400 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479 (524)
Q Consensus 400 GmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrH 479 (524)
|||+++||||||++|++||+|+||+|++++||+.+|||.+..|||||||||.+++.|.+++|..+++||+...+.|||||
T Consensus 401 GmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRH 480 (585)
T KOG2387|consen 401 GMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRH 480 (585)
T ss_pred hhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccceeeecCchHHHHHhCCchhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999888999999988999999999
Q ss_pred ccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEE-Eec
Q 009814 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVL-LNY 523 (524)
Q Consensus 480 rYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~-vqy 523 (524)
||||||+.++.|+.+|+.|+|.+.+|.++|++|+++||||. +||
T Consensus 481 RyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg~Qf 525 (585)
T KOG2387|consen 481 RYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQF 525 (585)
T ss_pred ceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCceeeecc
Confidence 99999999999999999999999999999999999999997 676
|
|
| >TIGR00337 PyrG CTP synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-191 Score=1521.41 Aligned_cols=502 Identities=56% Similarity=0.908 Sum_probs=484.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+|||||||+|||||+|||+|||+|++||||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~ 80 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLDT 80 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCCCCCcccCceEEEcCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+|||+||+||||||++||+|||+|||||||||||||||||||+||+++|+ ..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~G~ylG~tvQviPHvt~ei~~~i~~~~~------~~~~d~~i~EiGGTvGDiEs~pf~ 154 (525)
T TIGR00337 81 NLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRIKRVAK------ISGPDVVIVEIGGTVGDIESLPFL 154 (525)
T ss_pred CCcCCCCCChHHHHHHHHHHhhcCCcCCCeEEECCCCcHHHHHHHHHhcc------cCCCCEEEEEeCCccccccccHHH
Confidence 99999999999999999999999999999999999999999999999995 469999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||+++|++|+|||||||||||+++||+||||||||||+|||.|||||+|||||+.+++++.|+||||||+|++++
T Consensus 155 ea~rq~~~~~g~~~~~~ih~t~vp~l~~~~e~KtKPtQhsv~~lr~~Gi~pd~~~~R~~~~l~~~~~~Kia~f~~v~~~~ 234 (525)
T TIGR00337 155 EAIRQFRNEVGRENVAFIHVTLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSEPLDPSTKDKIALFCDVEEEA 234 (525)
T ss_pred HHHHHHHHhhCcCcEEEEEEeeeeeecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHH
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL 320 (524)
||+++|++|+|+||++|++||+++.|+++|+|+ .+.+++++|+++++++.++++.++||+||||+++.|+|.||.+||
T Consensus 235 vi~~~d~~~iY~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~~~daY~SI~eAL 312 (525)
T TIGR00337 235 VINAHDVSSIYEVPLLLLKQGLDDYLCRRLNLN--CDEADLSEWEELVEKFINPKHEVTIGIVGKYVELKDSYLSVIEAL 312 (525)
T ss_pred EEEcCCCccHhhhhHHHHHCChHHHHHHHhCCC--CCCCcHHHHHHHHHHhhCCCCCcEEEEEeCCcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999997 356679999999999999888899999999999999999999999
Q ss_pred HHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHh
Q 009814 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (524)
Q Consensus 321 ~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLG 400 (524)
.++|+++.+++.+.|+++++++..+ .+.|.++|||++|||||+|+.++++.++++|+++++|+||||||
T Consensus 313 ~~ag~~~~~~V~~~~i~se~i~~~~-----------~~~L~~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 313 KHAGAKLDTKVNIKWIDSEDLEEEG-----------AEFLKGVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred HhCccccCCEEEEEEecHHHhhhhh-----------hhhhcCCCEEEeCCCCCChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 9999999999999999998765322 13478899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCC-cCCCCCcccccceeeEeccCCcccccccCCcceeeeeecc
Q 009814 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479 (524)
Q Consensus 401 mQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~-~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrH 479 (524)
||+|++|||||++||++|||+||+++++|||+++|+++. ..++|||||||+|+|.+.++ |+++++|| +..+.|||||
T Consensus 382 ~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~g-S~L~~iyG-~~~i~erhrH 459 (525)
T TIGR00337 382 MQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPG-TLAFKLYG-KEEVYERHRH 459 (525)
T ss_pred HHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCC-ChHHHHhC-CCceeecccc
Confidence 999999999999999999999999999999999999865 68999999999999999999 99999996 6678899999
Q ss_pred ccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEE-EEec
Q 009814 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAV-LLNY 523 (524)
Q Consensus 480 rYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f-~vqy 523 (524)
||+||+.+.+++++.||+++|+++||++||+||+++|||| +|||
T Consensus 460 ry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQw 504 (525)
T TIGR00337 460 RYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQF 504 (525)
T ss_pred eEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEec
Confidence 9999999999988899999999999888999999999998 9998
|
CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7). |
| >PRK05380 pyrG CTP synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-191 Score=1521.65 Aligned_cols=501 Identities=54% Similarity=0.897 Sum_probs=484.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+|||||||+|||||+|||+|||+|+++|||||||||||||||||||||||||||+||||||||||||||+
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~EtDlDlG~YERf~~~ 81 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDT 81 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCCCCCCCccceeEEEccCCCcccccccchhhhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+|||+||+||||||++||+|||+|||||||||||||||||||+||+++| .+|||||||||||||||||+||+
T Consensus 82 ~l~~~~n~TtG~iy~~vi~kER~G~ylG~tvQviPHit~eI~~~i~~~~--------~~~dv~i~EiGGTvGDiEs~pf~ 153 (533)
T PRK05380 82 NLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILAAG--------TDADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CCccccccchHHHHHHHHHHhhccCccCceEEEccCccHHHHHHHHhcC--------CCCCEEEEEeCCccccccccHHH
Confidence 9999999999999999999999999999999999999999999999997 37899999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||+++|++|+|||||||||||+++||+||||||||||+|||+|||||+|||||+.+++++.|+||||||+|++++
T Consensus 154 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~E~KtKPtQhsv~~lr~~Gi~pd~i~~R~~~~l~~~~~~Kia~fc~v~~~~ 233 (533)
T PRK05380 154 EAIRQLRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHHhhCCCcEEEEEEeccceecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHH
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL 320 (524)
||+++|++|+|+||++|++||+++.++++|+|+ .+.+++++|+++++++.++.++++||+||||+++.|||.|+.+||
T Consensus 234 vi~~~d~~~iy~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL 311 (533)
T PRK05380 234 VISAPDVDSIYEVPLLLHEQGLDDIVLERLGLE--APEPDLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred EEEcCCCccHHhhhHHHHHCCCHHHHHHHcCCC--CCCCCHHHHHHHHHHHhCCCCceEEEEEeCccCCcHHHHHHHHHH
Confidence 999999999999999999999999999999997 366789999999999999888999999999999999999999999
Q ss_pred HHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHh
Q 009814 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (524)
Q Consensus 321 ~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLG 400 (524)
+|+|+++++++++.||++++++.++ +++.+.++|||++|||||+++.++++.++++|+++++|+||||+|
T Consensus 312 ~hag~~~~~~v~i~wIdse~l~~~~----------~~~~L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 312 KHAGIANDVKVNIKWIDSEDLEEEN----------VAELLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred HHHHHHcCCeeEEEEEChhhccCcc----------hhhHhhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 9999999999999999999886533 246789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCC-cCCCCCcccccceeeEeccCCcccccccCCcceeeeeecc
Q 009814 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479 (524)
Q Consensus 401 mQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~-~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrH 479 (524)
||+|++||||+++|+++|+|+||++++++||+++|+++. ..++|||||||+|+|.+.++ |+++++|| +..|.|||||
T Consensus 382 mQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~g-S~l~~iyg-~~~i~ErhrH 459 (533)
T PRK05380 382 MQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPG-TLAAEIYG-KEEIYERHRH 459 (533)
T ss_pred HHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCC-ChHHHHhC-CCceeeeccc
Confidence 999999999999999999999999999999999998864 56899999999999999999 99999996 7789999999
Q ss_pred ccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEE-EEec
Q 009814 480 RYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAV-LLNY 523 (524)
Q Consensus 480 rYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f-~vqy 523 (524)
||+||+.+.+++++.||+++|+++||++||++|+++|||| .|||
T Consensus 460 ryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQw 504 (533)
T PRK05380 460 RYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQF 504 (533)
T ss_pred ceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeC
Confidence 9999999999998889999999999888999999999988 8998
|
|
| >PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-142 Score=1051.17 Aligned_cols=276 Identities=65% Similarity=1.078 Sum_probs=237.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTDDGGETDLDLGHYERFLDI 80 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-TTS-EEETHHHHHHHHHTS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCCCcCccceeEecCccccccccchHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+|+++||+||||||++||+|||+|+|||||||||||||||||+||+++|+ ..+|||||||||||||||||+|||
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeIk~~I~~~a~------~~~~Dv~iiEiGGTVGDIEs~pFl 154 (276)
T PF06418_consen 81 NLTKDNNITTGKIYQSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAK------KPEPDVVIIEIGGTVGDIESLPFL 154 (276)
T ss_dssp ---GGGEEEHHHHHHHHHHHHHTTTTTTS---CCCHHHHHHHHHHHHHHC------CCT-SEEEEEEESETTSCCCHHHH
T ss_pred CCcccccccHHHHHHHHHHHHhcCcccCceeeecchHHHHHHHHHHHhcC------CCCCCEEEEecCCcccccccccHH
Confidence 99999999999999999999999999999999999999999999999995 458999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||+++|++|+||||||||||++++||+||||||||||+|||+|||||+|||||+.+++++.|+||||||+|++++
T Consensus 155 EAirQl~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~Lr~~GI~PDilvcRs~~~l~~~~k~KIalFc~V~~e~ 234 (276)
T PF06418_consen 155 EAIRQLRNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKELRSIGIQPDILVCRSERPLDEEIKEKIALFCNVPPEN 234 (276)
T ss_dssp HHHHHHHHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHHHHTT---SEEEEEESS---HHHHHHHHHHCTS-GGG
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHHHhCCCCCCEEEEcCCCCCCHHHHHHHHccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHH
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEW 284 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W 284 (524)
||+++|++++|+||++|++||+++.++++|+|+ .+.+++++|
T Consensus 235 VI~~~Dv~sIYeVPl~L~~qgl~~~i~~~L~L~--~~~~dl~~W 276 (276)
T PF06418_consen 235 VISAPDVSSIYEVPLLLEEQGLDEYILKRLNLE--KKEPDLSEW 276 (276)
T ss_dssp EEEEE--SSCCHHHHHHHHTTHHHHHHHHTT----------HHH
T ss_pred EEEcCCcccHHHHHHHHHHcCcHHHHHHHcCcC--CCCCCcccC
Confidence 999999999999999999999999999999998 467799999
|
The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B. |
| >cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-133 Score=981.46 Aligned_cols=255 Identities=62% Similarity=1.031 Sum_probs=252.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~ 81 (524)
|||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||++
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~ 80 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN 80 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH
Q 009814 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (524)
Q Consensus 82 ~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~e 161 (524)
|+++||+||||||++||+|||+|+|||||||||||||||||+||+++|+ ..++||||||||||||||||+||+|
T Consensus 81 l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHit~eIk~~i~~~~~------~~~~dv~i~EiGGTvGDiEs~pf~E 154 (255)
T cd03113 81 LSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAE------KSGADVVIVEIGGTVGDIESLPFLE 154 (255)
T ss_pred CcCccCcChHHHHHHHHHHhhccCccCceEEECcCccHHHHHHHHHhhc------cCCCCEEEEEeCCccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999995 4689999999999999999999999
Q ss_pred HHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCe
Q 009814 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241 (524)
Q Consensus 162 a~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~V 241 (524)
|+||||+++|++|+||||||||||++++||+|||||||||++||+.||+||+||||++.+++++.++|||+||+|+.++|
T Consensus 155 Airq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlFcnVpve~V 234 (255)
T cd03113 155 AIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEAV 234 (255)
T ss_pred HHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccchhhHHHHHhhh
Q 009814 242 ITLYDVPNIWHIPLLLRDQKA 262 (524)
Q Consensus 242 i~i~dvdtiy~vpl~LreqG~ 262 (524)
+..+|++++|+||+.|++||+
T Consensus 235 I~~~d~~~iY~vPl~l~~q~~ 255 (255)
T cd03113 235 ISAPDVDNIYEVPLLLEQQGL 255 (255)
T ss_pred eecCCCcchhhccHHHHhCcC
Confidence 999999999999999999985
|
The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain. |
| >PRK06186 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=432.01 Aligned_cols=202 Identities=33% Similarity=0.467 Sum_probs=186.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~ 377 (524)
++||+||||+++.|+|.||.+||+|+|+..++++++.||++++++++ +.|+++|||+||||||.||+
T Consensus 2 v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~-------------~~l~~~dgilvpgGfg~rg~ 68 (229)
T PRK06186 2 LRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDP-------------EDLAGFDGIWCVPGSPYRND 68 (229)
T ss_pred cEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCCh-------------hhHhhCCeeEeCCCCCcccH
Confidence 68999999999999999999999999999999999999999988642 25889999999999999999
Q ss_pred hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec
Q 009814 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (524)
Q Consensus 378 eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~ 457 (524)
+|+|.+|+|||++++|+||||||||+|+||||||++|++||+|+||++++++||+.+|+. .... ..|+|.+.
T Consensus 69 ~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~-~~~~-------~~h~v~l~ 140 (229)
T PRK06186 69 DGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSC-SLVE-------KTGDIRLR 140 (229)
T ss_pred hHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECcc-cccc-------CceEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999972 2222 23889999
Q ss_pred cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcE-EEEec
Q 009814 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIA-VLLNY 523 (524)
Q Consensus 458 ~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~-f~vqy 523 (524)
++ |+++++|| +..|.|||||||+||+.+.+.+++.||+++|+++||. ||+||+++||| +.|||
T Consensus 141 ~~-S~l~~iyg-~~~i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG~-iEaiE~~~hpf~lGVQw 204 (229)
T PRK06186 141 PG-SLIARAYG-TLEIEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGD-VRAVELPGHPFFVATLF 204 (229)
T ss_pred CC-CHHHHHhC-CCeeeeeccccEEECHHHHHHHhcCCeEEEEEcCCCC-EEEEEeCCCCcEEEEeC
Confidence 99 99999996 7789999999999999999999999999999999995 99999999995 57887
|
|
| >COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=376.52 Aligned_cols=254 Identities=17% Similarity=0.222 Sum_probs=209.6
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHhhcC-CCCCCChhh
Q 009814 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLN-LQGTTKEPL 280 (524)
Q Consensus 202 ~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~-l~~~~~~~~ 280 (524)
.+.||.++++.++|+|+.+..+||||++.||..||+.++|++|.+|||| +|+++||++|+|++++..-. +++......
T Consensus 67 ~d~Es~~i~~~G~vvre~~~~~Sn~ra~~sL~~~Lk~~gipgI~GIDTR-aLtr~iR~~G~m~~~I~~~~~~~~~~~~~~ 145 (368)
T COG0505 67 EDFESDRIHAAGLVVRELSERPSNWRATESLDEYLKEEGIPGIAGIDTR-ALTRKIREKGAMKGVIATGPELDPAKLLER 145 (368)
T ss_pred hhccccCceEEEEEEcccccccCccccccCHHHHHHHcCCCceecccHH-HHHHHHHhcCCcceEeecCcccChHHHHHH
Confidence 5789999999999999999999999999999999999999999999999 99999999999999876542 221000111
Q ss_pred HHHH-----HHHHHhhcCC------------CCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccc
Q 009814 281 LKEW-----TSRAEICDGL------------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLED 343 (524)
Q Consensus 281 l~~W-----~~lv~~~~~~------------~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~ 343 (524)
...| .+++++++.. ....+|+++ ||+ .+.||++.|..+||.+.+. |++.-
T Consensus 146 ~~~~~~~~~~dlv~~VSt~~~~~~~~~~~~~~~~~~Vv~i-D~G----vK~nIlr~L~~rg~~vtVV------P~~t~-- 212 (368)
T COG0505 146 ARAFPGILGTDLVKEVSTKEPYTWPGLNGGGEPGKHVVVI-DFG----VKRNILRELVKRGCRVTVV------PADTS-- 212 (368)
T ss_pred HhhcCCCCcccccceeecCCceeccccccCCCCCcEEEEE-EcC----ccHHHHHHHHHCCCeEEEE------cCCCC--
Confidence 2223 2445444321 124689999 698 9999999999999999987 55421
Q ss_pred cccCCChhhhhHHHHhc-cCCCEEEECCCCCCC-chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCc
Q 009814 344 ATEKENPDAYKAAWKLL-KGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANST 421 (524)
Q Consensus 344 ~~~~~~p~~y~~~~~~l-~~~DGIllpGGfG~r-g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~ 421 (524)
+.+.+ .++|||||||||||| .++..+.+++...+.++|+|||||||||+++|+|++++||+++|+.
T Consensus 213 ------------~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~KmkFGHrG 280 (368)
T COG0505 213 ------------AEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMKFGHRG 280 (368)
T ss_pred ------------HHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeecccCCCC
Confidence 22433 689999999999999 6788999999999999999999999999999999999999999984
Q ss_pred ccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEE
Q 009814 422 EFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGK 501 (524)
Q Consensus 422 Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~ 501 (524)
.||||+++. .+ +..|++ |||+|+|+++.+. +.. +++++
T Consensus 281 -----~NhPV~dl~----------------------tg----------rv~ITS-QNHGyaVd~~s~~---~~~-~vth~ 318 (368)
T COG0505 281 -----ANHPVKDLD----------------------TG----------RVYITS-QNHGYAVDEDSLV---ETL-KVTHV 318 (368)
T ss_pred -----CCcCccccc----------------------CC----------eEEEEe-cCCceecChhhcC---CCc-eeEEE
Confidence 889998864 12 445775 9999999998443 223 89999
Q ss_pred eCCCCeEEEEEECCCcEEEEec
Q 009814 502 DETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 502 ~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+|.++|++++++.|+|+|||
T Consensus 319 nlnDgTvEGi~h~~~P~fSVQ~ 340 (368)
T COG0505 319 NLNDGTVEGIRHKDLPAFSVQY 340 (368)
T ss_pred eCCCCCccceecCCCceEEEcc
Confidence 9999999999999999999998
|
|
| >cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=336.34 Aligned_cols=214 Identities=57% Similarity=0.903 Sum_probs=195.3
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~ 377 (524)
++||+||||++..|+|.|+.++|.+++.+....+.+.|+++++++..+ .++.+.++|||++||||+.+..
T Consensus 1 ~~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~----------~~~~l~~~dgivl~GG~~~~~~ 70 (235)
T cd01746 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEEN----------AEEALKGADGILVPGGFGIRGV 70 (235)
T ss_pred CEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccc----------hhhhhccCCEEEECCCCCCcch
Confidence 489999999999999999999999999999889999999987764321 1246788999999999999988
Q ss_pred hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCC-CcCCCCCcccccceeeEe
Q 009814 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRTYF 456 (524)
Q Consensus 378 eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~-~~~~~GgtmrLg~~~v~l 456 (524)
++.+.++++++++++|+||||+|||+|+++||++++++++++++|+++.+++|++.++.+. ...++|+|||||.|.+.+
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i 150 (235)
T cd01746 71 EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVIL 150 (235)
T ss_pred hhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEE
Confidence 8999999999999999999999999999999999999999999999999999999998774 577889999999999999
Q ss_pred ccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEE-EEec
Q 009814 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAV-LLNY 523 (524)
Q Consensus 457 ~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f-~vqy 523 (524)
.++ |+++++|| ++++.++|+|+|+||++++..+.+.|++++++++|+.+||++|.++|||| +|||
T Consensus 151 ~~~-s~l~~~~g-~~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~ 216 (235)
T cd01746 151 KPG-TLAHKYYG-KDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQF 216 (235)
T ss_pred CCC-ChHHHHhC-CCEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEEC
Confidence 999 99999996 67778899999999999998766789999999997777999999999999 9998
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th |
| >TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=324.62 Aligned_cols=254 Identities=17% Similarity=0.248 Sum_probs=195.9
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhH
Q 009814 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLL 281 (524)
Q Consensus 202 ~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l 281 (524)
.++||.+|++.++|||+.+..+||||++.||..||++++|++|.+|||| +|+++||++|+|+++|..-..+.......+
T Consensus 64 ~~~es~~~~~~g~iv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~gvDTR-~lt~~iR~~G~~~~~i~~~~~~~~~~~~~~ 142 (358)
T TIGR01368 64 EDAESKGIHVSGLVVRELSDRYSNWRATESLDQFLKRHGIPGIYGVDTR-ALVKKIREKGTMKGVISTEDSNDEELVQKA 142 (358)
T ss_pred hhhcccCCcEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCeeEEEecCCCChHHHHHHH
Confidence 4589999999999999999999999999999999999999999999999 999999999999998864222210001112
Q ss_pred HHH-----HHHHHhhcCC------C----CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCcccccc
Q 009814 282 KEW-----TSRAEICDGL------H----EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE 346 (524)
Q Consensus 282 ~~W-----~~lv~~~~~~------~----~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~ 346 (524)
..| .+++++++.. . ...+|+++ ||+ .+.|++++|+.+|+.+.+. +.+.
T Consensus 143 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~i~vi-D~G----~k~ni~~~L~~~G~~v~vv------p~~~------ 205 (358)
T TIGR01368 143 SVSPDIDGINLVAEVSTKEPYTWGQKRGGKKKRVVVI-DFG----VKQNILRRLVKRGCEVTVV------PYDT------ 205 (358)
T ss_pred HhCCCCccCCccceeccCCCEEeCCCCCCCccEEEEE-eCC----cHHHHHHHHHHCCCEEEEE------cCCC------
Confidence 222 2355555431 1 12589999 587 7789999999999987665 3221
Q ss_pred CCChhhhhHHHHhc-cCCCEEEECCCCCCC-chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccC
Q 009814 347 KENPDAYKAAWKLL-KGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFD 424 (524)
Q Consensus 347 ~~~p~~y~~~~~~l-~~~DGIllpGGfG~r-g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~ 424 (524)
++ .+.. ..+|||||+||||+| .....++.++++.+ ++|+||||||||+|++++|++++++++.|+.
T Consensus 206 --~~------~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl~~gh~G--- 273 (358)
T TIGR01368 206 --DA------EEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKMKFGHRG--- 273 (358)
T ss_pred --CH------HHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHHhCCceeccCcCcCC---
Confidence 00 1222 357999999999998 45677899999998 9999999999999999999999998876653
Q ss_pred CCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCC
Q 009814 425 PNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET 504 (524)
Q Consensus 425 ~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~d 504 (524)
.+|||..+. .+ +..++ +|+|+|+|+++.+. +.++++++++.+
T Consensus 274 --~nhpV~~~~----------------------~~----------~v~it-sqnH~~aV~~~~l~---~~~l~vta~~~n 315 (358)
T TIGR01368 274 --GNHPVKDLI----------------------TG----------RVEIT-SQNHGYAVDPDSLP---AGDLEVTHVNLN 315 (358)
T ss_pred --CceeeEECC----------------------CC----------cEEEe-ecCCCcEEcccccC---CCceEEEEEECC
Confidence 456654431 11 22244 48899999886642 458999999987
Q ss_pred CCeEEEEEECCCcEEEEec
Q 009814 505 SQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 505 g~~VE~iE~~~hp~f~vqy 523 (524)
+++||++|++++|+|+|||
T Consensus 316 Dg~Vegi~h~~~pi~gVQf 334 (358)
T TIGR01368 316 DGTVEGIRHKDLPVFSVQY 334 (358)
T ss_pred CCcEEEEEECCCCEEEEEE
Confidence 7789999999999999998
|
This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. |
| >PRK12564 carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=323.33 Aligned_cols=253 Identities=16% Similarity=0.235 Sum_probs=196.7
Q ss_pred HhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHH
Q 009814 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLK 282 (524)
Q Consensus 203 ~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~ 282 (524)
++||.+|++.++|||+.+..+++||++.||..||++++|++|.+|||| +|+++||++|+|+++|..-..+.......+.
T Consensus 69 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~ipgi~gvDTR-~l~~~iR~~G~~~~~i~~~~~~~~~~~~~~~ 147 (360)
T PRK12564 69 DFESDRPHAKGLIVRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTR-ALTRKLREKGAMKGVIATEDFDAEELLEKAR 147 (360)
T ss_pred ccccCCccEEEEEECcCCCCCCccccccCHHHHHHHCCCCCCCCCcHH-HHHHHHHhcCCceEEEecCCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999 9999999999999988642211100011233
Q ss_pred HH-----HHHHHhhcCCC----------CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccC
Q 009814 283 EW-----TSRAEICDGLH----------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEK 347 (524)
Q Consensus 283 ~W-----~~lv~~~~~~~----------~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~ 347 (524)
.| .+++.+++..+ ...+|+++ |++ .+.|++++|+.+|+.+.+. +.+.-
T Consensus 148 ~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~I~vi-D~G----~k~nivr~L~~~G~~v~vv------p~~~~------ 210 (360)
T PRK12564 148 AFPGLLGLDLVKEVSTKEPYPWPGPGGELKYKVVAI-DFG----VKRNILRELAERGCRVTVV------PATTT------ 210 (360)
T ss_pred cCCCCcccCCcceeCCCCCEECCCCCCCCCCEEEEE-eCC----cHHHHHHHHHHCCCEEEEE------eCCCC------
Confidence 33 35566655421 13589999 587 7789999999999887765 32210
Q ss_pred CChhhhhHHHHhc-cCCCEEEECCCCCCC-chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCC
Q 009814 348 ENPDAYKAAWKLL-KGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP 425 (524)
Q Consensus 348 ~~p~~y~~~~~~l-~~~DGIllpGGfG~r-g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~ 425 (524)
+ .+.. .++||||||||||+| .....++.++++.++++|+||||||||+|++++|+++.+++.+++.
T Consensus 211 --~------~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~~gh~G---- 278 (360)
T PRK12564 211 --A------EEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMKFGHRG---- 278 (360)
T ss_pred --H------HHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccCCCccC----
Confidence 0 1221 379999999999998 4577889999999989999999999999999999999988776542
Q ss_pred CCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCC
Q 009814 426 NTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETS 505 (524)
Q Consensus 426 ~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg 505 (524)
.+|||.... . ++..++ +|+|+|+|+++.++ .++++++++.++
T Consensus 279 -~~~pv~~~~-----------------------~---------~~~~it-s~~H~~~V~~~~lp----~~l~v~a~~~~D 320 (360)
T PRK12564 279 -ANHPVKDLE-----------------------T---------GKVEIT-SQNHGFAVDEDSLP----ANLEVTHVNLND 320 (360)
T ss_pred -CceeeEECC-----------------------C---------CcEEEE-ecCcccEEcccccC----CceEEEEEeCCC
Confidence 345544321 1 022244 48899999876553 479999999877
Q ss_pred CeEEEEEECCCcEEEEec
Q 009814 506 QRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 506 ~~VE~iE~~~hp~f~vqy 523 (524)
+++|++|++++|+|+|||
T Consensus 321 g~iegi~~~~~pi~gVQf 338 (360)
T PRK12564 321 GTVEGLRHKDLPAFSVQY 338 (360)
T ss_pred CcEEEEEECCCCEEEEEe
Confidence 789999999999999998
|
|
| >PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=321.69 Aligned_cols=253 Identities=18% Similarity=0.208 Sum_probs=194.4
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHhhcCC-CCCCChhh
Q 009814 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNL-QGTTKEPL 280 (524)
Q Consensus 202 ~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l-~~~~~~~~ 280 (524)
.+.||.++++.++|||+.+..++|||++.+|..||++++|++|.+|||| +|+++||++|+|+++|..-+. +.......
T Consensus 120 ~d~ES~~~~~~G~vv~e~~~~~s~~~~~~sL~~~L~~~~ipgI~giDTR-aLt~~iR~~G~m~g~i~~~~~~~~~~~~~~ 198 (415)
T PLN02771 120 DDEESRQCFLAGLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYDVDTR-AITRRLREDGSLIGVLSTEDSKTDEELLKM 198 (415)
T ss_pred hhhcccCCcEEEEEeCcCCCCCCcccccCCHHHHHHHcCCcceecCcHH-HHHHHHHhcCCeeEEEecCCCCCHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999 999999999999999864221 10000111
Q ss_pred HHHH----HHHHHhhcCCC---------------------CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEE
Q 009814 281 LKEW----TSRAEICDGLH---------------------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDW 335 (524)
Q Consensus 281 l~~W----~~lv~~~~~~~---------------------~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~ 335 (524)
+..| .++++.++... ...+|+++ +++ ++.+|++.|+..|+.+.+.
T Consensus 199 ~~~~~~~~~~lv~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivvi-D~G----~K~nIlr~L~~~G~~v~Vv----- 268 (415)
T PLN02771 199 SRSWDIVGIDLISGVSCKSPYEWVDKTNPEWDFNTNSRDGESYHVIAY-DFG----IKHNILRRLASYGCKITVV----- 268 (415)
T ss_pred HHhCCCccCCccceecCCCCEEecCCCcccccccccccCCCCCEEEEE-CCC----hHHHHHHHHHHcCCeEEEE-----
Confidence 2223 24455554311 11579998 587 8999999999999988876
Q ss_pred eeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCCC-chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccc
Q 009814 336 IPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVL 413 (524)
Q Consensus 336 i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~r-g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~ 413 (524)
+.+.- +.+. ..++|||||+||||+| .....++.++.+. .++|+||||||||+|+.++|++|.
T Consensus 269 -P~~~~--------------~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~ 332 (415)
T PLN02771 269 -PSTWP--------------ASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELL-GKVPVFGICMGHQLLGQALGGKTF 332 (415)
T ss_pred -CCCCC--------------HHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEE
Confidence 33210 1122 2479999999999999 4455667777765 479999999999999999999999
Q ss_pred cccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhc
Q 009814 414 NLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLEN 493 (524)
Q Consensus 414 gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~ 493 (524)
++++.|+. .++||.++. .+ +..|+ .|+|+|+|+++.++
T Consensus 333 K~~~Gh~G-----~n~pV~~~~----------------------~~----------~v~it-sqnHg~aVd~~sLp---- 370 (415)
T PLN02771 333 KMKFGHHG-----GNHPVRNNR----------------------TG----------RVEIS-AQNHNYAVDPASLP---- 370 (415)
T ss_pred ECCCCccc-----ceEEEEECC----------------------CC----------CEEEE-ecCHHHhhccccCC----
Confidence 98886653 345544321 11 22355 38999999876653
Q ss_pred CCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 494 AGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 494 ~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.++++++++.+++++|++++++.|+|+|||
T Consensus 371 ~~~~vt~~nlnDgtvegi~~~~~pi~gVQF 400 (415)
T PLN02771 371 EGVEVTHVNLNDGSCAGLAFPALNVMSLQY 400 (415)
T ss_pred CceEEEEEeCCCCcEEEEEECCCCEEEEEc
Confidence 479999999888889999999999999998
|
|
| >PRK12838 carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=311.77 Aligned_cols=251 Identities=16% Similarity=0.181 Sum_probs=192.9
Q ss_pred HhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHH
Q 009814 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLK 282 (524)
Q Consensus 203 ~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~ 282 (524)
++||.+|++.++|||+.+..+||||++.+|..||++++|++|.+|||| +|+++||++|+|++++..-. +. .....+.
T Consensus 67 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR-~lt~~lR~~G~~~~~i~~~~-~~-~~~~~~~ 143 (354)
T PRK12838 67 DYESKQPQVKGVIVYELSREGSHYRAKQSLDDFLKEWNIPGISGVDTR-ALVKHIREKGTMKASITTTD-DA-HAFDQIK 143 (354)
T ss_pred hhcccCceEEEEEECcCCCCCCcccccCCHHHHHHHCCCCcccCCCHH-HHHHHHHHcCCceEEEecCC-cH-HHHHHHH
Confidence 689999999999999999999999999999999999999999999999 99999999999999886422 11 1111222
Q ss_pred HH---HHHHHhhcCCC------CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhh
Q 009814 283 EW---TSRAEICDGLH------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAY 353 (524)
Q Consensus 283 ~W---~~lv~~~~~~~------~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y 353 (524)
.| .++++.++..+ ...+|+++ ||+ .+.++.++|+.+|+.+.+. +.+. ++
T Consensus 144 ~~~~~~~~v~~vs~~~~~~~~~~~~~V~vi-D~G----~k~ni~~~L~~~G~~v~vv------p~~~--------~~--- 201 (354)
T PRK12838 144 ALVLPKNVVAQVSTKEPYTYGNGGKHVALI-DFG----YKKSILRSLSKRGCKVTVL------PYDT--------SL--- 201 (354)
T ss_pred hhhccCCcccEEEcCCCEEeCCCCCEEEEE-CCC----HHHHHHHHHHHCCCeEEEE------ECCC--------CH---
Confidence 22 35566665422 23589999 576 8899999999999887765 3221 00
Q ss_pred hHHHHh-ccCCCEEEECCCCCCC-chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCe
Q 009814 354 KAAWKL-LKGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPC 431 (524)
Q Consensus 354 ~~~~~~-l~~~DGIllpGGfG~r-g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pV 431 (524)
.+. -.++||||||||||+| .....++.++.+.++ +|+||||||||+|++++|+++.+++.+|+. .+|||
T Consensus 202 ---~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl~~gh~G-----~~hpV 272 (354)
T PRK12838 202 ---EEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPILGICLGHQLIALALGADTEKLPFGHRG-----ANHPV 272 (354)
T ss_pred ---HHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecCCCCccC-----CceEE
Confidence 111 1379999999999998 445667888888876 999999999999999999999988776542 34444
Q ss_pred eeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEE
Q 009814 432 VIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVW 511 (524)
Q Consensus 432 i~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~i 511 (524)
.. ... + ++ .++ +++|+|+|+++.++ ..++.+++++.++++||++
T Consensus 273 ~~-----------------------~~~-~---~~-----~~t-s~~H~~aV~~~sl~---~~~l~v~a~~~~Dg~Veai 316 (354)
T PRK12838 273 ID-----------------------LTT-G---RV-----WMT-SQNHGYVVDEDSLD---GTPLSVRFFNVNDGSIEGL 316 (354)
T ss_pred EE-----------------------CCC-C---eE-----EEe-ccchheEecccccC---CCCcEEEEEECCCCeEEEE
Confidence 32 222 1 12 233 48899999875543 3468999998877789999
Q ss_pred EECCCcEEEEec
Q 009814 512 TFNYKIAVLLNY 523 (524)
Q Consensus 512 E~~~hp~f~vqy 523 (524)
+++++|+|+|||
T Consensus 317 ~~~~~pi~gVQf 328 (354)
T PRK12838 317 RHKKKPVLSVQF 328 (354)
T ss_pred EECCCCEEEEEe
Confidence 999999999998
|
|
| >CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=302.34 Aligned_cols=253 Identities=16% Similarity=0.208 Sum_probs=190.9
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhH
Q 009814 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLL 281 (524)
Q Consensus 202 ~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l 281 (524)
.++||.+|++.++|||+.+..+||||++.+|..||++++|++|.+|||| +|+++||++|.|+++|..-..+.......+
T Consensus 70 ~~~es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~l~~~~ipgi~gvDTR-~lt~~iR~~G~~~g~i~~~~~~~~~~~~~~ 148 (382)
T CHL00197 70 EDIESVKIQVKGIIAKNICKSSSNWRQQESLVSYLQRHKIPFIFGIDTR-ALTQHLRRFGTMNGCISNQNLNLSYLRAKI 148 (382)
T ss_pred hhhcccCccEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCceEEEEcCCCChHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999 999999999999999865322210000111
Q ss_pred HHH-----HHHHHhhcCC-------C----------------CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeee
Q 009814 282 KEW-----TSRAEICDGL-------H----------------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVI 333 (524)
Q Consensus 282 ~~W-----~~lv~~~~~~-------~----------------~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i 333 (524)
..| .+++++++.. . ...+|+++ |++ ...||.+.|+.+|+.+.+.
T Consensus 149 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vi-D~g----~k~ni~~~L~~~G~~v~vv--- 220 (382)
T CHL00197 149 KESPHMPSSDLIPRVTTSSYYEWDEKSHPSFYLADNKRPHSSYQLKIIVI-DFG----VKYNILRRLKSFGCSITVV--- 220 (382)
T ss_pred HcCCCCccCCccceecCCCCEEecCCCccccccccccccccCCCCEEEEE-ECC----cHHHHHHHHHHCCCeEEEE---
Confidence 112 3455554431 0 13689999 575 6789999999999887665
Q ss_pred EEeeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCCCc-hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccc
Q 009814 334 DWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 411 (524)
Q Consensus 334 ~~i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~rg-~eg~i~air~are~~iP~LGICLGmQll~ie~gr~ 411 (524)
+.+. ++ .+. ..++||||++||||+|. ....++.++.+.+.++|+||||||||+|+.++|++
T Consensus 221 ---p~~~--------~~------~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~ 283 (382)
T CHL00197 221 ---PATS--------PY------QDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAK 283 (382)
T ss_pred ---cCCC--------CH------HHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCE
Confidence 2221 00 111 23799999999999984 45567788888777999999999999999999999
Q ss_pred cccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhh
Q 009814 412 VLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARL 491 (524)
Q Consensus 412 v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l 491 (524)
+.+++..+.. .+||+ .+ .+ +..++ .++|+|+|+++.+.
T Consensus 284 v~k~~~Gh~g-----~n~pv-----------------------~~-~~----------~v~it-sq~H~~~v~~~sv~-- 321 (382)
T CHL00197 284 TFKLKFGHRG-----LNHPS-----------------------GL-NQ----------QVEIT-SQNHGFAVNLESLA-- 321 (382)
T ss_pred EeccCCCCCC-----CCEec-----------------------CC-CC----------ceEEe-ecchheEeeccccC--
Confidence 9887765432 22332 10 11 22344 37899999987664
Q ss_pred hcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 492 ENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 492 ~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
..++.+++.+.++.++|+++++++|+|+|||
T Consensus 322 -~~~~~vt~~~~nDgtvegi~h~~~pi~gVQF 352 (382)
T CHL00197 322 -KNKFYITHFNLNDGTVAGISHSPKPYFSVQY 352 (382)
T ss_pred -CCCcEEEEEECCCCCEEEEEECCCCcEEEee
Confidence 2378999998767779999999999999998
|
|
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=285.41 Aligned_cols=272 Identities=16% Similarity=0.178 Sum_probs=211.6
Q ss_pred EEeeeeeeecCCCccccCC-chhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHH
Q 009814 178 IHVSLVPVLNVVGEQKTKP-TQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLL 256 (524)
Q Consensus 178 ih~~~vp~~~~~~e~ktkp-tq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~ 256 (524)
|-+---|.++.-|=- +++ -+-..+.++|.+|++.+||+++.+.-.++|++.-||-.|+++++|+++.||||| +|+++
T Consensus 50 iLv~T~PlIGNyGVP-~~~~DE~l~~~fES~~I~vaglVV~~ys~~ysHW~a~~SL~eWlq~~gVp~i~gvDTR-aLtk~ 127 (1435)
T KOG0370|consen 50 ILVFTYPLIGNYGVP-PDARDEGLLKHFESGQIHVAGLVVGEYSIEYSHWLATKSLGEWLQEEGVPGIYGVDTR-ALTKK 127 (1435)
T ss_pred EEEEecccccCCCCC-CCccccccccccccCceEEEEEEhhhhccchhhhhhhhhHHHHHHhcCCCccccccHH-HHHHH
Confidence 444445777666655 444 445667789999999999999999999999999999999999999999999999 99999
Q ss_pred HHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhcC-------CCCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeE
Q 009814 257 LRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDG-------LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 329 (524)
Q Consensus 257 LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~-------~~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v 329 (524)
|||||.|-+.+...+-++.-..|+ -++++..++. ..+..+|+.+ +.+ .+.++++.|..+|+.+.+
T Consensus 128 lReqGSmLgkl~~e~~~~~~vdpn---~~nLvs~VS~Kep~~y~~Gk~~~I~ai-DcG----~K~N~IRcL~~RGa~vtV 199 (1435)
T KOG0370|consen 128 LREQGSMLGKLSIEKSPVLFVDPN---KRNLVSQVSTKEPKVYGDGKSLRILAI-DCG----LKYNQIRCLVKRGAEVTV 199 (1435)
T ss_pred HHhcCcceeEEEecCCCCcccCCC---cccchhhheeccceEEcCCcccEEEEc-ccC----chHHHHHHHHHhCceEEE
Confidence 999999977664322211000000 0345555543 1335688888 465 889999999999999998
Q ss_pred EeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 330 KLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 330 ~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-g~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
. +.+.. .+ -.++||||++||||+| -....+..++..++.++|+||||+|||+++.|.
T Consensus 200 v------Pw~~~---------------i~-~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA~Aa 257 (1435)
T KOG0370|consen 200 V------PWDYP---------------IA-KEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLALAA 257 (1435)
T ss_pred e------cCCcc---------------cc-ccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHHHHhh
Confidence 6 33221 01 1289999999999999 457888999999998999999999999999999
Q ss_pred ccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhH
Q 009814 409 ARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMI 488 (524)
Q Consensus 409 gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v 488 (524)
|++++||+++|+. -|+|+.+. .. ++-.|++ |||+|+|+++.+
T Consensus 258 GakT~KmKyGNRG-----hNiP~~~~-----------------------~t---------Grc~ITS-QNHGYAVD~~tL 299 (1435)
T KOG0370|consen 258 GAKTYKMKYGNRG-----HNIPCTCR-----------------------AT---------GRCFITS-QNHGYAVDPATL 299 (1435)
T ss_pred CCceEEeeccccC-----CCccceec-----------------------cC---------ceEEEEe-cCCceeeccccc
Confidence 9999999998774 34443322 11 1334774 999999999777
Q ss_pred HhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 489 ARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 489 ~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+ .|++....|.++..-|+|.|...|+|+|||
T Consensus 300 p----~gWk~lFvN~NDgSNEGI~Hss~P~fSvQF 330 (1435)
T KOG0370|consen 300 P----AGWKPLFVNANDGSNEGIMHSSKPFFSVQF 330 (1435)
T ss_pred c----CCCchheeecccCCCceEecCCCCceeeec
Confidence 5 488989999988899999999999999998
|
|
| >COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-21 Score=183.77 Aligned_cols=160 Identities=28% Similarity=0.382 Sum_probs=113.4
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECC-C-CCCC
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG-G-FGNR 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpG-G-fG~r 375 (524)
++|+|+ ||+ +. +..|+.+||+++|+++.+. .+| +.+..+|+||+|| | |++-
T Consensus 2 ~~i~II-Dyg-~G-NL~Sv~~Aler~G~~~~vs-----------------~d~-------~~i~~AD~liLPGVGaf~~a 54 (204)
T COG0118 2 MMVAII-DYG-SG-NLRSVKKALERLGAEVVVS-----------------RDP-------EEILKADKLILPGVGAFGAA 54 (204)
T ss_pred CEEEEE-EcC-cc-hHHHHHHHHHHcCCeeEEe-----------------cCH-------HHHhhCCEEEecCCCCHHHH
Confidence 579999 698 44 8999999999999877764 233 6788999999999 3 3331
Q ss_pred --ch--hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCC-----CCCCeeeeCCC-CCcCCCCC
Q 009814 376 --GV--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPN-----TKNPCVIFMPE-GSKTHMGG 445 (524)
Q Consensus 376 --g~--eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~-----~~~pVi~l~~e-~~~~~~Gg 445 (524)
++ .|.+++++.+.+.++|+||||||||+|. ..|+|.+.. .+..|+.+.++ .++|||||
T Consensus 55 m~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLf------------e~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGW 122 (204)
T COG0118 55 MANLRERGLIEAIKEAVESGKPFLGICLGMQLLF------------ERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGW 122 (204)
T ss_pred HHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhh------------hcccccCCCCCcceecceEEEcCCCCCCCCcccc
Confidence 22 3789999998889999999999999999 678887542 47888888877 78999999
Q ss_pred cc-cccceeeEeccCCcccccccCCcceeeeeeccccccCh---hhHHhhhcCCeEEEEEeCCCC
Q 009814 446 TM-RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNP---DMIARLENAGLSFTGKDETSQ 506 (524)
Q Consensus 446 tm-rLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~---~~v~~l~~~Gl~~sg~~~dg~ 506 (524)
|- ..- ....|..+-..-..+ +|.|+|.+.+ +.+-.-.++|..|++.-.+|+
T Consensus 123 N~l~~~-~~~~l~~gi~~~~~~---------YFVHSY~~~~~~~~~v~~~~~YG~~f~AaV~k~N 177 (204)
T COG0118 123 NQVEFV-RGHPLFKGIPDGAYF---------YFVHSYYVPPGNPETVVATTDYGEPFPAAVAKDN 177 (204)
T ss_pred ceeecc-CCChhhcCCCCCCEE---------EEEEEEeecCCCCceEEEeccCCCeeEEEEEeCC
Confidence 92 221 111122220000122 5999999875 333333467777877665554
|
|
| >cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=172.40 Aligned_cols=158 Identities=21% Similarity=0.358 Sum_probs=112.5
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-chh
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-GVQ 378 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-g~e 378 (524)
|+++ +|+ +-+++.++|+.+|+.+.+. +.+.- + ......++|||+++||++++ ...
T Consensus 1 i~i~-d~g----~~~~~~~~l~~~G~~~~~~------~~~~~--------~-----~~~~~~~~dgiil~GG~~~~~~~~ 56 (178)
T cd01744 1 VVVI-DFG----VKHNILRELLKRGCEVTVV------PYNTD--------A-----EEILKLDPDGIFLSNGPGDPALLD 56 (178)
T ss_pred CEEE-ecC----cHHHHHHHHHHCCCeEEEE------ECCCC--------H-----HHHhhcCCCEEEECCCCCChhHhH
Confidence 4667 577 4468899999999877654 22110 0 00123579999999999986 446
Q ss_pred HHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEecc
Q 009814 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 458 (524)
Q Consensus 379 g~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~ 458 (524)
..++.++++.++++|+||||+|||+|+.++|+++...+..++. ..++ +....
T Consensus 57 ~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~~~~~g-----~~~~-----------------------v~~~~ 108 (178)
T cd01744 57 EAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMKFGHRG-----SNHP-----------------------VKDLI 108 (178)
T ss_pred HHHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCCCCCCC-----Ccee-----------------------eEEcC
Confidence 7788999999999999999999999999999999764432221 1122 22211
Q ss_pred CCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 459 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 459 g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
. + +..+ .++.|+|+|+++.++ .|+++++++.+++.+|++|++++|+++|||
T Consensus 109 ~-~--------~~~~-v~~~H~~~v~~~~lp----~~~~v~a~s~~~~~i~a~~~~~~~i~GvQf 159 (178)
T cd01744 109 T-G--------RVYI-TSQNHGYAVDPDSLP----GGLEVTHVNLNDGTVEGIRHKDLPVFSVQF 159 (178)
T ss_pred C-C--------CcEE-EEcCceEEEcccccC----CceEEEEEECCCCcEEEEEECCCCeEEEee
Confidence 1 1 1111 247799999876553 489999998755569999999999999998
|
This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is |
| >PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group [] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=171.93 Aligned_cols=161 Identities=24% Similarity=0.370 Sum_probs=118.5
Q ss_pred HHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-hhHHHHHHHHHHHcC
Q 009814 313 YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-VQGKILAAKYAREHR 391 (524)
Q Consensus 313 y~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg-~eg~i~air~are~~ 391 (524)
-.++.++|+..|+++.+. |++.+.. ..++.+.++|||+++||++++. .+..+.+++++++++
T Consensus 10 ~~~l~~~l~~~~~~~~v~----~~~~~~~-------------~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~ 72 (192)
T PF00117_consen 10 THSLVRALRELGIDVEVV----RVDSDFE-------------EPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERK 72 (192)
T ss_dssp HHHHHHHHHHTTEEEEEE----ETTGGHH-------------HHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCeEEEE----ECCCchh-------------hhhhhhcCCCEEEECCcCCccccccccccccccccccc
Confidence 367889999998666654 5433111 0112478999999999999996 799999999999999
Q ss_pred CCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcc
Q 009814 392 IPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRT 471 (524)
Q Consensus 392 iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~ 471 (524)
+|+||||+|||+|+.++|+++...+. .++.||++.+...+. ...+++...
T Consensus 73 ~PilGIC~G~Q~la~~~G~~v~~~~~----------------------~~~~g~~~~~~~~~~--------~~~~~~~~~ 122 (192)
T PF00117_consen 73 IPILGICLGHQILAHALGGKVVPSPE----------------------KPHHGGNIPISETPE--------DPLFYGLPE 122 (192)
T ss_dssp SEEEEETHHHHHHHHHTTHEEEEEES----------------------EEEEEEEEEEEEEEE--------HGGGTTSTS
T ss_pred eEEEEEeehhhhhHHhcCCccccccc----------------------ccccccccccccccc--------ccccccccc
Confidence 99999999999999999999853221 134455544322221 112332234
Q ss_pred eeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 472 FIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 472 ~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
....++.|+|+|++. .+...|+++.+.+.++..++++...++|++++||
T Consensus 123 ~~~~~~~H~~~v~~~---~~~p~~~~~la~s~~~~~~~~~~~~~~~i~g~Qf 171 (192)
T PF00117_consen 123 SFKAYQYHSDAVNPD---DLLPEGFEVLASSSDGCPIQAIRHKDNPIYGVQF 171 (192)
T ss_dssp EEEEEEEECEEEEEG---HHHHTTEEEEEEETTTTEEEEEEECTTSEEEESS
T ss_pred ccccccccceeeecc---cccccccccccccccccccccccccccEEEEEec
Confidence 566789999999985 2224689999999888569999999999999998
|
The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B .... |
| >PRK08007 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-19 Score=171.72 Aligned_cols=164 Identities=17% Similarity=0.184 Sum_probs=109.3
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCCCchh
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRGVQ 378 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~rg~e 378 (524)
|.+++.|.++. .++.+.|+..|+++.+. +.+++.. .+. ..++||||++||||+|...
T Consensus 2 il~idn~Dsft---~nl~~~l~~~g~~v~v~------~~~~~~~-------------~~~~~~~~d~iils~GPg~p~~~ 59 (187)
T PRK08007 2 ILLIDNYDSFT---WNLYQYFCELGADVLVK------RNDALTL-------------ADIDALKPQKIVISPGPCTPDEA 59 (187)
T ss_pred EEEEECCCccH---HHHHHHHHHCCCcEEEE------eCCCCCH-------------HHHHhcCCCEEEEcCCCCChHHC
Confidence 77888776432 57899999999877764 3332211 111 2479999999999998432
Q ss_pred -HHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec
Q 009814 379 -GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (524)
Q Consensus 379 -g~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~ 457 (524)
-....++. .+.++|+||||||||+|+.++|+++.+....+.. ...++ ...
T Consensus 60 ~~~~~~~~~-~~~~~PiLGIClG~Q~la~a~Gg~v~~~~~~~~g-----~~~~v-----------------------~~~ 110 (187)
T PRK08007 60 GISLDVIRH-YAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHG-----KTSPI-----------------------THN 110 (187)
T ss_pred CccHHHHHH-hcCCCCEEEECHHHHHHHHHcCCEEEeCCCcccC-----CceEE-----------------------EEC
Confidence 23455554 4678999999999999999999999764432211 11121 111
Q ss_pred cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 458 ~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.. ++...+- ....+ .+.|+|.|++..+ ..|++++|.+.++. +|++++++.|+++|||
T Consensus 111 ~~-~l~~~~~-~~~~v--~~~H~~~v~~~~l----p~~~~v~a~~~~~~-i~a~~~~~~~i~GvQf 167 (187)
T PRK08007 111 GE-GVFRGLA-NPLTV--TRYHSLVVEPDSL----PACFEVTAWSETRE-IMGIRHRQWDLEGVQF 167 (187)
T ss_pred CC-CcccCCC-CCcEE--EEcchhEEccCCC----CCCeEEEEEeCCCc-EEEEEeCCCCEEEEEe
Confidence 11 2222211 11223 3779998865433 35899999998876 9999999999999998
|
|
| >TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-19 Score=168.55 Aligned_cols=164 Identities=15% Similarity=0.193 Sum_probs=111.4
Q ss_pred EEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCCCch
Q 009814 300 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRGV 377 (524)
Q Consensus 300 IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~rg~ 377 (524)
|.+++.|. +| .++.+.|+..|+.+.+. +.+... . .+. -.++|||+|+||||++..
T Consensus 2 il~id~~d----sft~~~~~~l~~~g~~v~v~------~~~~~~-------~------~~~~~~~~d~iilsgGpg~p~~ 58 (188)
T TIGR00566 2 VLMIDNYD----SFTYNLVQYFCELGAEVVVK------RNDSLT-------L------QEIEALLPLLIVISPGPCTPNE 58 (188)
T ss_pred EEEEECCc----CHHHHHHHHHHHcCCceEEE------ECCCCC-------H------HHHHhcCCCEEEEcCCCCChhh
Confidence 67887665 55 57889999998887665 222110 0 011 136899999999999843
Q ss_pred -hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEe
Q 009814 378 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (524)
Q Consensus 378 -eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l 456 (524)
.-..+.++++ ..++|+||||+|||+++.++|+++.+.+.. + | |+ ..++.+
T Consensus 59 ~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~~GG~v~~~~~~---~-------------------~-g~-----~~~v~~ 109 (188)
T TIGR00566 59 AGISLEAIRHF-AGKLPILGVCLGHQAMGQAFGGDVVRANTV---M-------------------H-GK-----TSEIEH 109 (188)
T ss_pred cchhHHHHHHh-ccCCCEEEECHHHHHHHHHcCCEEeeCCCc---c-------------------c-cc-----eEEEEE
Confidence 2336777777 678999999999999999999999653211 0 1 11 122333
Q ss_pred ccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 457 ~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.+. +++..+.+ + ....+.|+|.|+++.+ ..++++++.+.+++.+|+++++++|+++|||
T Consensus 110 ~~~-~~~~~l~~-~--~~v~~~H~~~v~~~~l----~~~~~v~a~s~~~~~v~a~~~~~~~i~gvQf 168 (188)
T TIGR00566 110 NGA-GIFRGLFN-P--LTATRYHSLVVEPETL----PTCFPVTAWEEENIEIMAIRHRDLPLEGVQF 168 (188)
T ss_pred CCC-ccccCCCC-C--cEEEEcccceEecccC----CCceEEEEEcCCCCEEEEEEeCCCCEEEEEe
Confidence 222 33334442 2 2224779999976444 3579999999876579999999999999998
|
This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase. |
| >COG2071 Predicted glutamine amidotransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-18 Score=167.41 Aligned_cols=139 Identities=21% Similarity=0.361 Sum_probs=104.8
Q ss_pred HhccCCCEEEECCCCC-------C----------C-chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCC
Q 009814 358 KLLKGADGILVPGGFG-------N----------R-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 419 (524)
Q Consensus 358 ~~l~~~DGIllpGGfG-------~----------r-g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~ 419 (524)
+.+...||+++|||-. . | .....+..||.|++.++|+||||+|||+|+++||++++ ++..
T Consensus 56 ~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~--q~i~ 133 (243)
T COG2071 56 QYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLY--QDIS 133 (243)
T ss_pred HHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeee--hhhh
Confidence 4577899999999921 1 0 12467899999999999999999999999999999984 3322
Q ss_pred CcccCCCCCCCeeeeCCCCCcCCC-CCcccccceeeEeccCCcccccccCCc-ceeeeeeccccccChhhHHhhhcCCeE
Q 009814 420 STEFDPNTKNPCVIFMPEGSKTHM-GGTMRLGSRRTYFQIKDCKSAKLYGNR-TFIDERHRHRYEVNPDMIARLENAGLS 497 (524)
Q Consensus 420 S~Ef~~~~~~pVi~l~~e~~~~~~-GgtmrLg~~~v~l~~g~s~~~~iYg~~-~~I~erhrHrYeVn~~~v~~l~~~Gl~ 497 (524)
.... .+ .|. +.......|++.++++ |.+++++|.. ..+++.| | |.+++| +.||+
T Consensus 134 ~~~~----------~~-----~H~~~~~~~~~~H~V~i~~~-s~La~i~g~~~~~VNS~H-h------QaIk~L-a~~L~ 189 (243)
T COG2071 134 EQPG----------HI-----DHRQPNPVHIESHEVHIEPG-SKLAKILGESEFMVNSFH-H------QAIKKL-APGLV 189 (243)
T ss_pred cccc----------cc-----cccCCCCcccceeEEEecCC-ccHHHhcCccceeecchH-H------HHHHHh-CCCcE
Confidence 2110 01 121 1123344799999999 9999999744 4677755 4 889998 78999
Q ss_pred EEEEeCCCCeEEEEEECC-CcEEEEec
Q 009814 498 FTGKDETSQRMEVWTFNY-KIAVLLNY 523 (524)
Q Consensus 498 ~sg~~~dg~~VE~iE~~~-hp~f~vqy 523 (524)
++++++||. |||||.++ ..++.||.
T Consensus 190 V~A~a~DG~-VEAie~~~~~fvlGVQW 215 (243)
T COG2071 190 VEARAPDGT-VEAVEVKNDAFVLGVQW 215 (243)
T ss_pred EEEECCCCc-EEEEEecCCceEEEEec
Confidence 999999875 99999996 66778885
|
|
| >PRK07765 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.6e-18 Score=165.64 Aligned_cols=169 Identities=18% Similarity=0.205 Sum_probs=111.8
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-h
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-V 377 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg-~ 377 (524)
+|.+++.|.++ + .++.+.|+..|+.+.+. +.+.-.. .+..+.+.++|||||+|||+++. .
T Consensus 2 ~ilv~d~~~~~--~-~~~~~~l~~~G~~~~~~------~~~~~~~----------~~~~~~~~~~dgliisGGp~~~~~~ 62 (214)
T PRK07765 2 RILVVDNYDSF--V-FNLVQYLGQLGVEAEVW------RNDDPRL----------ADEAAVAAQFDGVLLSPGPGTPERA 62 (214)
T ss_pred eEEEEECCCcH--H-HHHHHHHHHcCCcEEEE------ECCCcCH----------HHHHHhhcCCCEEEECCCCCChhhc
Confidence 67788655422 1 25678899899887764 2221000 00112356899999999999973 3
Q ss_pred hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec
Q 009814 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (524)
Q Consensus 378 eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~ 457 (524)
.-.+..++++.++++|+||||+|||+|+.++|+++.+.+. . +. |++ +.+.+.
T Consensus 63 ~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~--~-~~--------------------g~~-----~~v~~~ 114 (214)
T PRK07765 63 GASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPE--L-LH--------------------GKT-----SSVHHT 114 (214)
T ss_pred chHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCC--C-cc--------------------Cce-----eEEEEC
Confidence 4466899999999999999999999999999999965221 1 10 111 112222
Q ss_pred cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 458 ~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.. +.+..+. + ...-.+.|+|.|.+..+ ..|+.+++.+.++. +|+++++++|+++|||
T Consensus 115 ~~-~~~~~~~--~-~~~v~~~H~~~v~~~~l----p~~~~vla~s~~~~-vqa~~~~~~~i~gvQf 171 (214)
T PRK07765 115 GV-GVLAGLP--D-PFTATRYHSLTILPETL----PAELEVTARTDSGV-IMAVRHRELPIHGVQF 171 (214)
T ss_pred CC-ccccCCC--C-ccEEEecchheEecccC----CCceEEEEEcCCCc-EEEEEeCCCCEEEEee
Confidence 21 2221221 1 12234789998875443 34899999998776 9999999999999998
|
|
| >COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=160.23 Aligned_cols=168 Identities=20% Similarity=0.255 Sum_probs=116.3
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~ 377 (524)
.+|.+++.|.++. +++.+.|+..|+++.+..+ ++++. .+-...++|+|++|.|||.|..
T Consensus 2 ~~IL~IDNyDSFt---yNLv~yl~~lg~~v~V~rn------d~~~~------------~~~~~~~pd~iviSPGPG~P~d 60 (191)
T COG0512 2 MMILLIDNYDSFT---YNLVQYLRELGAEVTVVRN------DDISL------------ELIEALKPDAIVISPGPGTPKD 60 (191)
T ss_pred ceEEEEECccchH---HHHHHHHHHcCCceEEEEC------CccCH------------HHHhhcCCCEEEEcCCCCChHH
Confidence 4799999887543 5888999999977776521 11211 0012357999999999999965
Q ss_pred hH-HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEe
Q 009814 378 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (524)
Q Consensus 378 eg-~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l 456 (524)
.| ..++|+.+ ..++|+||||||||.++.+||++|-..+.--+... . + +.|.|.
T Consensus 61 ~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HGK~----s-~---------i~h~g~----------- 114 (191)
T COG0512 61 AGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKT----S-I---------ITHDGS----------- 114 (191)
T ss_pred cchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCCcCCee----e-e---------eecCCc-----------
Confidence 55 66777777 66899999999999999999999965443222110 0 0 111111
Q ss_pred ccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 457 ~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.....+. +.-.+. |+ |+-.++++.++ ..+++++++.||+.+.+++++++|.+.|||
T Consensus 115 ----~iF~glp-~~f~v~-RY-HSLvv~~~~lP----~~l~vtA~~~d~~~IMai~h~~~pi~gvQF 170 (191)
T COG0512 115 ----GLFAGLP-NPFTVT-RY-HSLVVDPETLP----EELEVTAESEDGGVIMAVRHKKLPIYGVQF 170 (191)
T ss_pred ----ccccCCC-CCCEEE-ee-EEEEecCCCCC----CceEEEEEeCCCCEEEEEeeCCCCEEEEec
Confidence 1111122 122333 55 88888887665 479999999998889999999999999998
|
|
| >PRK06895 putative anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=159.44 Aligned_cols=166 Identities=12% Similarity=0.136 Sum_probs=109.0
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~ 377 (524)
++|.+++.|.+. . .++.++|+.+|+++.+. ..++.+ + +.+.++||||++||||.+..
T Consensus 2 ~~iliid~~dsf--~-~~i~~~l~~~g~~~~v~------~~~~~~-------~-------~~l~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSF--T-FNLVDLIRKLGVPMQVV------NVEDLD-------L-------DEVENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCch--H-HHHHHHHHHcCCcEEEE------ECCccC-------h-------hHhccCCEEEECCCCCChHH
Confidence 478999766533 2 35899999999887765 222111 1 35678999999999997632
Q ss_pred -hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEe
Q 009814 378 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (524)
Q Consensus 378 -eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l 456 (524)
....+.++. .+.++|+||||||||+|+.++|++|.+++.. .|.+++ ++..
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~~----------------------~~g~~~------~v~~ 109 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQTLCEFFGGELYNLNNV----------------------RHGQQR------PLKV 109 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecCCC----------------------ccCceE------EEEE
Confidence 233455554 4678999999999999999999998543210 111111 1222
Q ss_pred ccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 457 ~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.++ +.+.+-.. ....-.|.|+|.+.+..++ .++..++.+.++. ++++++.++|++++||
T Consensus 110 ~~~-~~l~~~~~--~~~~v~~~Hs~~v~~~~lp----~~l~~~a~~~~~~-i~a~~~~~~pi~GvQF 168 (190)
T PRK06895 110 RSN-SPLFDGLP--EEFNIGLYHSWAVSEENFP----TPLEITAVCDENV-VMAMQHKTLPIYGVQF 168 (190)
T ss_pred CCC-ChhhhcCC--CceEEEcchhheecccccC----CCeEEEEECCCCc-EEEEEECCCCEEEEEe
Confidence 222 21211111 1222347899998754332 4788888877664 9999999999999998
|
|
| >PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=161.74 Aligned_cols=163 Identities=17% Similarity=0.191 Sum_probs=105.7
Q ss_pred EEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHH-hccCCCEEEECCCCCCCch
Q 009814 300 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 300 IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~-~l~~~DGIllpGGfG~rg~ 377 (524)
|.+|+.|. +| .++.+.|+..|+++.+. ..+... + .+ ...++||||++||||++..
T Consensus 2 il~idn~d----sft~nl~~~l~~~g~~v~v~------~~~~~~-------~------~~~~~~~~d~iIlsgGP~~p~~ 58 (195)
T PRK07649 2 ILMIDNYD----SFTFNLVQFLGELGQELVVK------RNDEVT-------I------SDIENMKPDFLMISPGPCSPNE 58 (195)
T ss_pred EEEEeCCC----ccHHHHHHHHHHCCCcEEEE------eCCCCC-------H------HHHhhCCCCEEEECCCCCChHh
Confidence 67887665 54 46899999999887765 222211 1 01 1247999999999999833
Q ss_pred hH-HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEe
Q 009814 378 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (524)
Q Consensus 378 eg-~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l 456 (524)
.+ ....++. .+.++|+||||||||+|+.++|++|.+.+.. +. |++ ..+..
T Consensus 59 ~~~~~~~i~~-~~~~~PvLGIClG~Qlla~~lGg~V~~~~~~---~~--------------------G~~-----~~i~~ 109 (195)
T PRK07649 59 AGISMEVIRY-FAGKIPIFGVCLGHQSIAQVFGGEVVRAERL---MH--------------------GKT-----SLMHH 109 (195)
T ss_pred CCCchHHHHH-hcCCCCEEEEcHHHHHHHHHcCCEEeeCCCc---cc--------------------CCe-----EEEEE
Confidence 22 3344443 3578999999999999999999999654321 11 111 01111
Q ss_pred ccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 457 ~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.+.++...+. ....+ .+.|+|.|.+..+ ..|+++++.+.++. +++++++++|+++|||
T Consensus 110 -~~~~lf~~~~-~~~~v--~~~H~~~v~~~~l----p~~~~~~a~s~~~~-v~a~~~~~~~i~gvQF 167 (195)
T PRK07649 110 -DGKTIFSDIP-NPFTA--TRYHSLIVKKETL----PDCLEVTSWTEEGE-IMAIRHKTLPIEGVQF 167 (195)
T ss_pred -CCChhhcCCC-CCCEE--EEechheEecccC----CCCeEEEEEcCCCc-EEEEEECCCCEEEEEE
Confidence 1112222222 11122 4778988754333 35899999987775 9999999999999998
|
|
| >PLN02335 anthranilate synthase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=163.93 Aligned_cols=173 Identities=13% Similarity=0.131 Sum_probs=108.8
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHH-hccCCCEEEECCCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGN 374 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~-~l~~~DGIllpGGfG~ 374 (524)
...+|.+++.|.+ -..++.+.|+.+|+++.+. +.+.++. .+ ...++|||||+||||.
T Consensus 17 ~~~~ilviD~~ds---ft~~i~~~L~~~g~~~~v~------~~~~~~~-------------~~~~~~~~d~iVisgGPg~ 74 (222)
T PLN02335 17 QNGPIIVIDNYDS---FTYNLCQYMGELGCHFEVY------RNDELTV-------------EELKRKNPRGVLISPGPGT 74 (222)
T ss_pred ccCcEEEEECCCC---HHHHHHHHHHHCCCcEEEE------ECCCCCH-------------HHHHhcCCCEEEEcCCCCC
Confidence 4468999965542 2367899999999888775 3322211 11 1346899999999999
Q ss_pred CchhHH-HHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCccccccee
Q 009814 375 RGVQGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 453 (524)
Q Consensus 375 rg~eg~-i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~ 453 (524)
+...+. .+.++ +.+.++|+||||||||+|+.++|+++...+.. .+. +...|+... ..
T Consensus 75 p~d~~~~~~~~~-~~~~~~PiLGIClG~QlLa~alGg~v~~~~~~--~~~--G~~~~v~~~-~~---------------- 132 (222)
T PLN02335 75 PQDSGISLQTVL-ELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFG--VMH--GKSSPVHYD-EK---------------- 132 (222)
T ss_pred hhhccchHHHHH-HhCCCCCEEEecHHHHHHHHHhCCEEEeCCCc--ccc--CceeeeEEC-CC----------------
Confidence 843332 23333 34567999999999999999999998654321 000 011111110 00
Q ss_pred eEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCc-EEEEec
Q 009814 454 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKI-AVLLNY 523 (524)
Q Consensus 454 v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp-~f~vqy 523 (524)
..+ +++..+. . ...-.|.|+|.|+++.++ ..++++++.+.++. ++++|++++| +|+|||
T Consensus 133 ---~~~-~Lf~~l~--~-~~~v~~~H~~~v~~~~lp---~~~~~v~a~~~~~~-v~ai~~~~~~~i~GvQf 192 (222)
T PLN02335 133 ---GEE-GLFSGLP--N-PFTAGRYHSLVIEKDTFP---SDELEVTAWTEDGL-IMAARHRKYKHIQGVQF 192 (222)
T ss_pred ---CCC-hhhhCCC--C-CCEEEechhheEecccCC---CCceEEEEEcCCCC-EEEEEecCCCCEEEEEe
Confidence 001 1222221 1 122247899999865443 33599999987775 9999999999 899998
|
|
| >PRK05670 anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=158.84 Aligned_cols=164 Identities=15% Similarity=0.173 Sum_probs=104.6
Q ss_pred EEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch-
Q 009814 300 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV- 377 (524)
Q Consensus 300 IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~- 377 (524)
|.+++.| |+| .++.+.|+.+|+.+.+. +.+..+.. ..+. .++||||++||||++..
T Consensus 2 iliid~~----d~f~~~i~~~l~~~g~~~~v~------~~~~~~~~-----------~~~~-~~~dglIlsgGpg~~~d~ 59 (189)
T PRK05670 2 ILLIDNY----DSFTYNLVQYLGELGAEVVVY------RNDEITLE-----------EIEA-LNPDAIVLSPGPGTPAEA 59 (189)
T ss_pred EEEEECC----CchHHHHHHHHHHCCCcEEEE------ECCCCCHH-----------HHHh-CCCCEEEEcCCCCChHHc
Confidence 6778544 455 57899999999888765 32211100 0112 35899999999999833
Q ss_pred hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec
Q 009814 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (524)
Q Consensus 378 eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~ 457 (524)
......++. ...++|+||||+|||+|+.++|+++.+.+..+. |++ +++. .
T Consensus 60 ~~~~~~l~~-~~~~~PvLGIClG~Qlla~alGg~v~~~~~~~~-----------------------g~~-----~~v~-~ 109 (189)
T PRK05670 60 GISLELIRE-FAGKVPILGVCLGHQAIGEAFGGKVVRAKEIMH-----------------------GKT-----SPIE-H 109 (189)
T ss_pred chHHHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEecCCccc-----------------------Cce-----eEEE-e
Confidence 223445554 456899999999999999999999965432111 111 1111 0
Q ss_pred cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 458 ~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.++++...+. ....-.|.|+|.|++..+ ..++++.+.+.++ .+|+++++++|+++|||
T Consensus 110 ~~~~l~~~~~---~~~~v~~~H~~~v~~~~l----p~~~~~la~s~~~-~i~a~~~~~~~~~gvQf 167 (189)
T PRK05670 110 DGSGIFAGLP---NPFTVTRYHSLVVDRESL----PDCLEVTAWTDDG-EIMGVRHKELPIYGVQF 167 (189)
T ss_pred CCCchhccCC---CCcEEEcchhheeccccC----CCceEEEEEeCCC-cEEEEEECCCCEEEEee
Confidence 1101111111 112225889999864222 3589999999655 59999999999999998
|
|
| >CHL00101 trpG anthranilate synthase component 2 | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=159.02 Aligned_cols=164 Identities=18% Similarity=0.220 Sum_probs=106.1
Q ss_pred EEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHH-hccCCCEEEECCCCCCCch
Q 009814 300 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 300 IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~-~l~~~DGIllpGGfG~rg~ 377 (524)
|.+++.|. +| .++.+.|+..|+.+.+. +.+.... .+ ...++||||++||||++..
T Consensus 2 iliid~~d----sft~~l~~~l~~~g~~~~v~------~~~~~~~-------------~~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 2 ILIIDNYD----SFTYNLVQSLGELNSDVLVC------RNDEIDL-------------SKIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred EEEEECCC----chHHHHHHHHHhcCCCEEEE------ECCCCCH-------------HHHhhCCCCEEEECCCCCChHH
Confidence 67776444 44 46889999999877664 3322110 11 2257999999999999843
Q ss_pred hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec
Q 009814 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (524)
Q Consensus 378 eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~ 457 (524)
.+....+..+.+.++|+||||+|||+|+.++|++|.+.+.... |++ ..+. .
T Consensus 59 ~~~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~~~~-----------------------g~~-----~~~~-~ 109 (190)
T CHL00101 59 SGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAPKPMH-----------------------GKT-----SKIY-H 109 (190)
T ss_pred CcchHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEECCCccc-----------------------Cce-----eeEe-e
Confidence 3333344445678999999999999999999999966432111 111 0000 0
Q ss_pred cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCc-EEEEec
Q 009814 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKI-AVLLNY 523 (524)
Q Consensus 458 ~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp-~f~vqy 523 (524)
....+...+ .....-.+.|+|.|++..+ ..|+.+.+.+.++. +|+++++++| ++.|||
T Consensus 110 ~~~~l~~~~---~~~~~v~~~H~~~v~~~~l----p~~~~vla~s~~~~-v~a~~~~~~~~i~gvQf 168 (190)
T CHL00101 110 NHDDLFQGL---PNPFTATRYHSLIIDPLNL----PSPLEITAWTEDGL-IMACRHKKYKMLRGIQF 168 (190)
T ss_pred CCcHhhccC---CCceEEEcchhheeecccC----CCceEEEEEcCCCc-EEEEEeCCCCCEEEEEe
Confidence 110111111 1112234789999875333 34799999987765 9999999999 999998
|
|
| >PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.4e-17 Score=162.12 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=97.2
Q ss_pred HhccCCCEEEECCCCCC--C---------c------hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCC
Q 009814 358 KLLKGADGILVPGGFGN--R---------G------VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420 (524)
Q Consensus 358 ~~l~~~DGIllpGGfG~--r---------g------~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S 420 (524)
+.+..+||||++||+.+ | . ....++.+++|.++++|+||||+|||+|+++||+++.. +..
T Consensus 57 ~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~--~~~- 133 (254)
T PRK11366 57 QLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHR--KLC- 133 (254)
T ss_pred HHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEee--ccc-
Confidence 34677999999999643 1 1 13567899999999999999999999999999999963 210
Q ss_pred cccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcc--eeeeeeccccccChhhHHhhhcCCeEE
Q 009814 421 TEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRT--FIDERHRHRYEVNPDMIARLENAGLSF 498 (524)
Q Consensus 421 ~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~--~I~erhrHrYeVn~~~v~~l~~~Gl~~ 498 (524)
+......|. .. ......+ ...+.+.+.+.++ +++..+|++.. .+++.| | +.+..+ ..|+++
T Consensus 134 -~~~~~~~h~----~~-~~~~~~~--~~~~~h~v~~~~~-s~l~~i~~~~~~~~Vns~H-~------q~V~~l-~~gl~v 196 (254)
T PRK11366 134 -EQPELLEHR----ED-PELPVEQ--QYAPSHEVQVEEG-GLLSALLPECSNFWVNSLH-G------QGAKVV-SPRLRV 196 (254)
T ss_pred -ccccccccc----cC-Ccccccc--ccCCceEEEECCC-CcHHHhcCCCceEEeehHH-H------HHHhhc-ccceEE
Confidence 000000000 00 0000000 0113477888888 88888874222 344433 3 566666 679999
Q ss_pred EEEeCCCCeEEEEEECCCcE-EEEec
Q 009814 499 TGKDETSQRMEVWTFNYKIA-VLLNY 523 (524)
Q Consensus 499 sg~~~dg~~VE~iE~~~hp~-f~vqy 523 (524)
+|+++||. +|++|++++|| +.|||
T Consensus 197 ~A~s~dg~-ieAie~~~~~~~~GVQw 221 (254)
T PRK11366 197 EARSPDGL-VEAVSVINHPFALGVQW 221 (254)
T ss_pred EEEcCCCc-EEEEEeCCCCCEEEEEe
Confidence 99998885 99999999997 99997
|
|
| >TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-17 Score=154.71 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=108.3
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhcc--CCCEEEECCCCCCCch
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRGV 377 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~--~~DGIllpGGfG~rg~ 377 (524)
|+++ ||+.. .-.++.++|+..|+++.+. +.+++ + +.+. ++||||+|||++++..
T Consensus 1 i~ii-D~g~~--~~~~l~~~l~~~g~~~~~~----~~~~~----------~-------~~~~~~~~~glii~Gg~~~~~~ 56 (188)
T TIGR00888 1 ILVL-DFGSQ--YTQLIARRLRELGVYSELV----PNTTP----------L-------EEIREKNPKGIILSGGPSSVYA 56 (188)
T ss_pred CEEE-ECCch--HHHHHHHHHHHcCCEEEEE----eCCCC----------H-------HHHhhcCCCEEEECCCCCCcCc
Confidence 4677 57632 4567889999999877654 21110 1 2222 3569999999998754
Q ss_pred hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec
Q 009814 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (524)
Q Consensus 378 eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~ 457 (524)
......++.+.+.++|+||||+|||+|+.++|+++...+. +++|+ .++.+.
T Consensus 57 ~~~~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~~-----------------------~~~g~------~~v~~~ 107 (188)
T TIGR00888 57 ENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEK-----------------------REYGK------AELEIL 107 (188)
T ss_pred CCchHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecCCC-----------------------cccee------EEEEEe
Confidence 4567788999999999999999999999999998854321 11222 233333
Q ss_pred cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 458 ~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+. +.+.+-. ...+.-.+.|+|.+.. + ..++++.+.+.+. .+++++.++.|++++||
T Consensus 108 ~~-~~l~~~~--~~~~~~~~~H~~~v~~-----l-~~~~~vla~~~~~-~v~a~~~~~~~~~g~Qf 163 (188)
T TIGR00888 108 DE-DDLFRGL--PDESTVWMSHGDKVKE-----L-PEGFKVLATSDNC-PVAAMAHEEKPIYGVQF 163 (188)
T ss_pred cC-CHhhcCC--CCCcEEEeEccceeec-----C-CCCCEEEEECCCC-CeEEEEECCCCEEEEee
Confidence 32 2111111 1123335779988732 2 4578999988865 59999999999999998
|
separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit. |
| >PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-17 Score=160.35 Aligned_cols=165 Identities=22% Similarity=0.242 Sum_probs=105.3
Q ss_pred HHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCC-CC-C---------c-------
Q 009814 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF-GN-R---------G------- 376 (524)
Q Consensus 315 SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGf-G~-r---------g------- 376 (524)
+-+++++.+|+..... +... ++ ....+.+..+||||+|||. .- | .
T Consensus 28 ~Yv~~i~~aG~~pv~i------p~~~--------~~---~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~ 90 (217)
T PF07722_consen 28 SYVKAIEAAGGRPVPI------PYDA--------DD---EELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPE 90 (217)
T ss_dssp HHHHHHHHTT-EEEEE-------SS----------H---HHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHH
T ss_pred HHHHHHHHcCCEEEEE------ccCC--------CH---HHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHH
Confidence 3478899999865543 2211 01 1123567899999999998 32 1 1
Q ss_pred -hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 377 -VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 377 -~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
..-.+..+++|+++++|+||||+|||+|++++|++++. +.... . + ..... .+. -....|.+.
T Consensus 91 rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q--~~~~~-~--~----~~~~~-----~~~---~~~~~h~v~ 153 (217)
T PF07722_consen 91 RDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQ--DIPDQ-P--G----FPDHR-----QHP---QDFPSHPVR 153 (217)
T ss_dssp HHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEES--CCCCS-S-------EEECE-----E-S----TS--EEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCcee--ecccC-c--C----ccccc-----ccc---cccccccce
Confidence 12467788899999999999999999999999999854 22211 0 0 00000 000 034568888
Q ss_pred eccCCcccccccC-CcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCC--cEEEEec
Q 009814 456 FQIKDCKSAKLYG-NRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYK--IAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg-~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~h--p~f~vqy 523 (524)
+.++ |.++++++ .+..+++ .|.++|.+ + +.|++++|+++||. +|+||.+++ |++.||+
T Consensus 154 i~~~-s~l~~~~~~~~~~vns--~Hhq~v~~-----l-~~~l~v~A~s~Dg~-iEaie~~~~~~~~~GvQw 214 (217)
T PF07722_consen 154 IVPG-SLLAKILGSEEIEVNS--FHHQAVKP-----L-GEGLRVTARSPDGV-IEAIESPEHKYPILGVQW 214 (217)
T ss_dssp EETT-STCCCTSHHCTEEEEE--EECEEECC-----H-HCCEEEEEEECTSS-EEEEEECCESS-EEEESS
T ss_pred eccC-chHHHHhCcCcceeec--chhhhhhc-----c-CCCceEEEEecCCc-EEEEEEcCCCCCEEEEEe
Confidence 9998 99999996 3344554 45577765 3 56999999999776 999999996 5999997
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D. |
| >PRK06774 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=154.03 Aligned_cols=164 Identities=12% Similarity=0.196 Sum_probs=102.4
Q ss_pred EEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCCCch
Q 009814 300 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRGV 377 (524)
Q Consensus 300 IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~rg~ 377 (524)
|.+|+.|. +| .++.+.|+..|+++.+. ..+.... .+. ..++||||++||||++..
T Consensus 2 il~id~~d----sf~~nl~~~l~~~~~~~~v~------~~~~~~~-------------~~~~~~~~~~iilsgGP~~~~~ 58 (191)
T PRK06774 2 LLLIDNYD----SFTYNLYQYFCELGTEVMVK------RNDELQL-------------TDIEQLAPSHLVISPGPCTPNE 58 (191)
T ss_pred EEEEECCC----chHHHHHHHHHHCCCcEEEE------eCCCCCH-------------HHHHhcCCCeEEEcCCCCChHh
Confidence 67887665 55 47889999999887765 3322211 111 237899999999999833
Q ss_pred hH-HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEe
Q 009814 378 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (524)
Q Consensus 378 eg-~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l 456 (524)
.+ ....++. .+.++|+||||+|||+|+.++|+++...+. .|.+. ..++.
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~~GG~v~~~~~---~~~G~---~~~~~----------------------- 108 (191)
T PRK06774 59 AGISLAVIRH-FADKLPILGVCLGHQALGQAFGARVVRARQ---VMHGK---TSAIC----------------------- 108 (191)
T ss_pred CCCchHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEeCCc---ceecc---eEEEE-----------------------
Confidence 22 3344443 467899999999999999999999965321 11110 01110
Q ss_pred ccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCe---EEEEEECCCcEEEEec
Q 009814 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQR---MEVWTFNYKIAVLLNY 523 (524)
Q Consensus 457 ~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~---VE~iE~~~hp~f~vqy 523 (524)
....++...+- ....+ .+.|+|.|++..+ ..++.+++.+.++.. ++++++++.|++.|||
T Consensus 109 ~~~~~lf~~l~-~~~~v--~~~Hs~~v~~~~l----p~~~~vlA~s~~d~~~~~i~~~~~~~~~i~GvQf 171 (191)
T PRK06774 109 HSGQGVFRGLN-QPLTV--TRYHSLVIAADSL----PGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQF 171 (191)
T ss_pred ecCchhhcCCC-CCcEE--EEeCcceeeccCC----CCCeEEEEEeCCCCCcceEEEEEeCCCCEEEEEE
Confidence 00001111110 11123 4778988864333 358999999886543 5567788889999998
|
|
| >cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=150.78 Aligned_cols=164 Identities=18% Similarity=0.199 Sum_probs=104.4
Q ss_pred EEEeccCCCcchHH-HHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhH
Q 009814 301 AMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 379 (524)
Q Consensus 301 aiVGkY~~~~day~-SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg 379 (524)
.+++.|. .|. ++.+.|+.+|+++.+. +.+.-.+ ....+.++||||++||+|.+....
T Consensus 2 l~~~~~~----~~~~~~~~~l~~~G~~~~~~------~~~~~~~------------~~~~~~~~dgvil~gG~~~~~~~~ 59 (184)
T cd01743 2 LLIDNYD----SFTYNLVQYLRELGAEVVVV------RNDEITL------------EELELLNPDAIVISPGPGHPEDAG 59 (184)
T ss_pred EEEeCCC----ccHHHHHHHHHHcCCceEEE------eCCCCCH------------HHHhhcCCCEEEECCCCCCcccch
Confidence 3554443 443 4678899899877764 2221100 001357899999999999874444
Q ss_pred HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccC
Q 009814 380 KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK 459 (524)
Q Consensus 380 ~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g 459 (524)
....++.+.++++|+||||+|||+|+.++|+++...+... .|++ +++.+.+.
T Consensus 60 ~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~~~~~-----------------------~g~~-----~~v~~~~~ 111 (184)
T cd01743 60 ISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAPEPM-----------------------HGKT-----SEIHHDGS 111 (184)
T ss_pred hHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeCCCCC-----------------------cCce-----eEEEECCC
Confidence 4555666667889999999999999999999986432110 1111 12222221
Q ss_pred CcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 460 DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 460 ~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+..+- ....-.+.|+|.|+..-. ..++++.+.++++ .+++++++++|++.|||
T Consensus 112 -~~~~~~~---~~~~~~~~H~~~v~~~~~----~~~~~~la~~~~~-~v~a~~~~~~~i~gvQf 166 (184)
T cd01743 112 -GLFKGLP---QPFTVGRYHSLVVDPDPL----PDLLEVTASTEDG-VIMALRHRDLPIYGVQF 166 (184)
T ss_pred -ccccCCC---CCcEEEeCcEEEEecCCC----CceEEEEEeCCCC-eEEEEEeCCCCEEEEee
Confidence 2221111 112235889999865211 1247888888777 59999999999999998
|
Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese |
| >PRK08857 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=151.69 Aligned_cols=165 Identities=14% Similarity=0.184 Sum_probs=104.5
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHH-hccCCCEEEECCCCCCCchh
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRGVQ 378 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~-~l~~~DGIllpGGfG~rg~e 378 (524)
|.+++.|.++. .++.+.|+.+|+.+.+. +.+..+. .. ...++|+|+++|||+++...
T Consensus 2 il~id~~dsft---~~~~~~l~~~g~~~~~~------~~~~~~~-------------~~~~~~~~~~iilsgGp~~~~~~ 59 (193)
T PRK08857 2 LLMIDNYDSFT---YNLYQYFCELGAQVKVV------RNDEIDI-------------DGIEALNPTHLVISPGPCTPNEA 59 (193)
T ss_pred EEEEECCCCcH---HHHHHHHHHCCCcEEEE------ECCCCCH-------------HHHhhCCCCEEEEeCCCCChHHC
Confidence 77887666332 46889999999887765 3221110 01 12368999999999998322
Q ss_pred -HHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEec
Q 009814 379 -GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 457 (524)
Q Consensus 379 -g~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~ 457 (524)
-....++. .+.++|+||||||||+|+.++|+++.+.+.. |. |++ +++...
T Consensus 60 ~~~~~~i~~-~~~~~PiLGIClG~Qlia~a~Gg~v~~~~~~---~~--------------------G~~-----~~~~~~ 110 (193)
T PRK08857 60 GISLQAIEH-FAGKLPILGVCLGHQAIAQVFGGQVVRARQV---MH--------------------GKT-----SPIRHT 110 (193)
T ss_pred cchHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCEEEeCCCc---ee--------------------Cce-----EEEEEC
Confidence 23455554 4678999999999999999999999653321 11 111 011111
Q ss_pred cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeC--CCC--eEEEEEECCCcEEEEec
Q 009814 458 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE--TSQ--RMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 458 ~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~--dg~--~VE~iE~~~hp~f~vqy 523 (524)
.. +++..+- .+..+ .+.|++.|++..+ ..+++++|.+. ++. .+|+++++++|+|+|||
T Consensus 111 ~~-~l~~~~~-~~~~v--~~~H~~~v~~~~l----p~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~gvQf 172 (193)
T PRK08857 111 GR-SVFKGLN-NPLTV--TRYHSLVVKNDTL----PECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQF 172 (193)
T ss_pred CC-cccccCC-CccEE--EEccEEEEEcCCC----CCCeEEEEEecCcCCCcceEEEEEeCCCCEEEEee
Confidence 11 1111111 11223 4678898864333 35899999886 332 48899999999999998
|
|
| >cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-16 Score=147.20 Aligned_cols=163 Identities=17% Similarity=0.130 Sum_probs=104.1
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhH
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 379 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg 379 (524)
|+++ ||+.. .-.++.++|+.+|+.+.+. +.+.-. ....+.++||||+|||++.+..+.
T Consensus 1 i~~i-D~g~~--~~~~~~~~l~~~G~~~~~~------~~~~~~-------------~~~~~~~~dgvIl~Gg~~~~~~~~ 58 (181)
T cd01742 1 ILIL-DFGSQ--YTHLIARRVRELGVYSEIL------PNTTPL-------------EEIKLKNPKGIILSGGPSSVYEED 58 (181)
T ss_pred CEEE-ECCCc--hHHHHHHHHHhcCceEEEe------cCCCCh-------------hhhcccCCCEEEECCCcccccccc
Confidence 4567 46621 2356789999999766554 211100 012467899999999998763222
Q ss_pred HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccC
Q 009814 380 KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK 459 (524)
Q Consensus 380 ~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g 459 (524)
.....+++++.++|+||||+|||+|+.++|+++.+.+. ++.|++ ++.+.++
T Consensus 59 ~~~~~~~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~-----------------------~~~G~~------~v~~~~~ 109 (181)
T cd01742 59 APRVDPEIFELGVPVLGICYGMQLIAKALGGKVERGDK-----------------------REYGKA------EIEIDDS 109 (181)
T ss_pred cchhhHHHHhcCCCEEEEcHHHHHHHHhcCCeEEeCCC-----------------------CcceEE------EEEecCC
Confidence 33456777788999999999999999999998854221 112222 2222222
Q ss_pred CcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 460 DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 460 ~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+.+-. .......+.|+|+|. .+ ..++++.+.+.++. +|+++.++.|++.+||
T Consensus 110 -~~l~~~~--~~~~~~~~~H~~~v~-----~l-~~~~~~la~~~~~~-i~a~~~~~~~~~g~Qf 163 (181)
T cd01742 110 -SPLFEGL--PDEQTVWMSHGDEVV-----KL-PEGFKVIASSDNCP-VAAIANEEKKIYGVQF 163 (181)
T ss_pred -ChhhcCC--CCceEEEcchhhhhh-----hc-CCCcEEEEeCCCCC-EEEEEeCCCcEEEEEc
Confidence 2111111 112333477888763 23 35789999988665 9999999999999998
|
Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.2e-16 Score=173.72 Aligned_cols=170 Identities=17% Similarity=0.139 Sum_probs=115.2
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
...+|++| +|+. ..-.++.++|+..|+.+.+. +....+. .-...++|||||+||||.+
T Consensus 515 ~~~~IlVI-D~gd--s~~~~l~~~L~~~G~~v~vv------~~~~~~~-------------~~~~~~~DgLILsgGPGsp 572 (717)
T TIGR01815 515 EGRRILLV-DHED--SFVHTLANYLRQTGASVTTL------RHSHAEA-------------AFDERRPDLVVLSPGPGRP 572 (717)
T ss_pred CCCEEEEE-ECCC--hhHHHHHHHHHHCCCeEEEE------ECCCChh-------------hhhhcCCCEEEEcCCCCCc
Confidence 34689999 4762 13468999999999887654 1111000 0123579999999999998
Q ss_pred chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 376 g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
...+....++.+.+.++|+||||||||+|+.++|+++..++. +++|+. .++.
T Consensus 573 ~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~~-----------------------p~~G~~-----~~V~ 624 (717)
T TIGR01815 573 ADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPE-----------------------PVHGKA-----SRIR 624 (717)
T ss_pred hhcccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECCC-----------------------CeeCcc-----eEEE
Confidence 655667889999999999999999999999999999865432 222321 1111
Q ss_pred eccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+...+++...+ . ....-.|.|+|.+....+ ..++.+++.+.++. +++++++++|++.|||
T Consensus 625 ~~~~~~Lf~~l-p--~~~~v~~~HS~~~~~~~L----P~~~~vlA~s~d~~-v~Ai~~~~~~i~GVQF 684 (717)
T TIGR01815 625 VLGPDALFAGL-P--ERLTVGRYHSLFARRDRL----PAELTVTAESADGL-IMAIEHRRLPLAAVQF 684 (717)
T ss_pred ECCCChhhhcC-C--CCCEEEEECCCCcccccC----CCCeEEEEEeCCCc-EEEEEECCCCEEEEEe
Confidence 11110111111 1 112224789998755433 35899999997765 9999999999999998
|
This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate. |
| >PRK13566 anthranilate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=171.89 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=115.8
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
...+|.+| +|... .-.++.+.|+..|+.+.+. ..+.-+. .-...++|||||+||||.+
T Consensus 525 ~g~~IlvI-D~~ds--f~~~l~~~Lr~~G~~v~vv------~~~~~~~-------------~~~~~~~DgVVLsgGpgsp 582 (720)
T PRK13566 525 EGKRVLLV-DHEDS--FVHTLANYFRQTGAEVTTV------RYGFAEE-------------MLDRVNPDLVVLSPGPGRP 582 (720)
T ss_pred CCCEEEEE-ECCCc--hHHHHHHHHHHCCCEEEEE------ECCCChh-------------HhhhcCCCEEEECCCCCCh
Confidence 34689999 46621 3457889999999887664 2211000 0123579999999999998
Q ss_pred chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 376 g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
...+....++.+.++++|+||||||||+|+.++|+++..++..++ |+ .+++.
T Consensus 583 ~d~~~~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~~~~~-----------------------G~-----~~~V~ 634 (720)
T PRK13566 583 SDFDCKATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAYPMH-----------------------GK-----PSRIR 634 (720)
T ss_pred hhCCcHHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECCCCcc-----------------------CC-----ceEEE
Confidence 655678899999999999999999999999999999966433211 11 12233
Q ss_pred eccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+. +.+.+-. ...+.-.+.|+|.+....+ ..++++++.+.++. |+++++++.|++.|||
T Consensus 635 v~~~-~~Lf~~l--p~~~~v~~~Hs~~v~~~~L----p~~~~vlA~s~dg~-V~ai~~~~~pi~GVQF 694 (720)
T PRK13566 635 VRGP-GRLFSGL--PEEFTVGRYHSLFADPETL----PDELLVTAETEDGV-IMAIEHKTLPVAAVQF 694 (720)
T ss_pred ECCC-CchhhcC--CCCCEEEEecceeEeeccC----CCceEEEEEeCCCc-EEEEEECCCCEEEEec
Confidence 3222 2111111 1122234778887654333 35899999998775 9999999999999998
|
|
| >TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=172.66 Aligned_cols=173 Identities=18% Similarity=0.223 Sum_probs=111.2
Q ss_pred CCeEEEEEeccCCCcchH-HHHHHHHHHc-CCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAY-LSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day-~SI~~aL~~a-g~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG 373 (524)
.+++|.+++.|. +| .++.+.|+.. +..+.+ .++..+..+. +.+..+..+|||||+||||
T Consensus 4 ~~~~iL~ID~~D----Sft~nl~~~l~~~~g~~~~v----~vv~~d~~~~-----------~~~~~l~~~D~VVIspGPG 64 (742)
T TIGR01823 4 QRLHVLFIDSYD----SFTYNVVRLLEQQTDISVHV----TTVHSDTFQD-----------QLLELLPLFDAIVVGPGPG 64 (742)
T ss_pred CCceEEEEeCCc----chHHHHHHHHHHhcCCCcEE----EEEeCCCCch-----------hhhhhhcCCCEEEECCCCC
Confidence 457999997664 55 4788888776 333222 2234333211 0123467899999999999
Q ss_pred CCchhHHHHHHHHHHHc----CCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccc
Q 009814 374 NRGVQGKILAAKYAREH----RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 449 (524)
Q Consensus 374 ~rg~eg~i~air~are~----~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrL 449 (524)
.|..+..+..++.+++. ++|+||||||||+|+.++|+++...+..++ |+.
T Consensus 65 ~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~~~h-----------------------G~~--- 118 (742)
T TIGR01823 65 NPNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTPKH-----------------------GQV--- 118 (742)
T ss_pred CccchhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECCCCCc-----------------------CeE---
Confidence 99766666677777765 499999999999999999999865432211 110
Q ss_pred cceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 450 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 450 g~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+..... .+...+. ...+ .+.|+|.++++..+.+ .+.+++.+.++..+|+++++++|+|+|||
T Consensus 119 --~~v~~~~~-~lf~gl~--~~~v--~~~Hs~~v~~~~~~~l---~~~~~a~~~~~~~i~ai~h~~~pi~GVQF 182 (742)
T TIGR01823 119 --YEMHTNDA-AIFCGLF--SVKS--TRYHSLYANPEGIDTL---LPLCLTEDEEGIILMSAQTKKKPWFGVQY 182 (742)
T ss_pred --EEEEECCc-cccCCCC--CCce--eEEEEEEccCCCCCcc---eEEEEEEcCCCCeEEEEEEcCCceEEEEe
Confidence 11111111 1122222 1122 3668999876544322 25667777777789999999999999998
|
This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. |
| >PRK00758 GMP synthase subunit A; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-15 Score=142.07 Aligned_cols=158 Identities=22% Similarity=0.267 Sum_probs=99.6
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCC-CEEEECCCCCCCchh
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGA-DGILVPGGFGNRGVQ 378 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~-DGIllpGGfG~rg~e 378 (524)
|++++ |.. +.-.++.++|+.+|+.+.+. +.+. .+ +.+.+. ||||+|||+......
T Consensus 2 i~iid-~~~--~~~~~i~~~l~~~g~~~~~~------~~~~--------~~-------~~l~~~~dgivi~Gg~~~~~~~ 57 (184)
T PRK00758 2 IVVVD-NGG--QYNHLIHRTLRYLGVDAKII------PNTT--------PV-------EEIKAFEDGLILSGGPDIERAG 57 (184)
T ss_pred EEEEE-CCC--chHHHHHHHHHHcCCcEEEE------ECCC--------CH-------HHHhhcCCEEEECCCCChhhcc
Confidence 77885 541 13457889999999865443 2211 11 345566 999999998432211
Q ss_pred HHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEecc
Q 009814 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 458 (524)
Q Consensus 379 g~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~ 458 (524)
...+++++.++|+||||+|||+|+.++|+++...+. .|+ | ..++.+.+
T Consensus 58 ---~~~~~l~~~~~PilGIC~G~Q~L~~a~Gg~v~~~~~---~~~--------------------g------~~~i~~~~ 105 (184)
T PRK00758 58 ---NCPEYLKELDVPILGICLGHQLIAKAFGGEVGRGEY---GEY--------------------A------LVEVEILD 105 (184)
T ss_pred ---ccHHHHHhCCCCEEEEeHHHHHHHHhcCcEEecCCC---cee--------------------e------eEEEEEcC
Confidence 223344467899999999999999999998854321 111 1 12222222
Q ss_pred CCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 459 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 459 g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.+.++.. . .....-.+.|+|.|. .+ ..++++.+.++++. +|+++.+++|++.+||
T Consensus 106 ~~~l~~~-~--~~~~~~~~~H~~~v~-----~l-~~~~~~la~~~~~~-v~a~~~~~~~~~g~Qf 160 (184)
T PRK00758 106 EDDILKG-L--PPEIRVWASHADEVK-----EL-PDGFEILARSDICE-VEAMKHKEKPIYGVQF 160 (184)
T ss_pred CChhhhC-C--CCCcEEEeehhhhhh-----hC-CCCCEEEEECCCCC-EEEEEECCCCEEEEEc
Confidence 2121211 1 112223477888763 23 45799999998886 9999999999999998
|
|
| >PLN02347 GMP synthetase | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.6e-15 Score=160.96 Aligned_cols=163 Identities=18% Similarity=0.174 Sum_probs=106.2
Q ss_pred EEEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhc--cCCCEEEECCCCCCC
Q 009814 299 RIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNR 375 (524)
Q Consensus 299 ~IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l--~~~DGIllpGGfG~r 375 (524)
+|+++ ||+. .| .+|.++|+..|+.+.+. +.+. ++ +.+ .++|||||||||+.+
T Consensus 12 ~IlII-D~G~---~~t~~I~r~lrelgv~~~v~------p~~~--------~~-------~~i~~~~~dgIILsGGP~sv 66 (536)
T PLN02347 12 VVLIL-DYGS---QYTHLITRRVRELGVYSLLL------SGTA--------SL-------DRIASLNPRVVILSGGPHSV 66 (536)
T ss_pred EEEEE-ECCC---cHHHHHHHHHHHCCCeEEEE------ECCC--------CH-------HHHhcCCCCEEEECCCCCcc
Confidence 69999 5872 44 58899999999877654 2221 11 223 379999999999875
Q ss_pred chh---H-HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccc
Q 009814 376 GVQ---G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGS 451 (524)
Q Consensus 376 g~e---g-~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~ 451 (524)
... . ....++.+.+.++|+||||+|||+|+.++|++|.... ..|+ |+
T Consensus 67 ~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~---~~e~--------------------G~------ 117 (536)
T PLN02347 67 HVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGE---KQEY--------------------GR------ 117 (536)
T ss_pred cccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecC---Cccc--------------------ce------
Confidence 211 1 1234566667899999999999999999999985432 1121 21
Q ss_pred eeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 452 RRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 452 ~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.++.+..+ +.+.+-........-.+.|+|.|.. + ..|+++.|.+.++. ++++++++.|+|+|||
T Consensus 118 ~~v~i~~~-~~Lf~~l~~~~~~~v~~~Hsd~V~~-----l-P~g~~vlA~s~~~~-iaai~~~~~~i~GvQF 181 (536)
T PLN02347 118 MEIRVVCG-SQLFGDLPSGETQTVWMSHGDEAVK-----L-PEGFEVVAKSVQGA-VVAIENRERRIYGLQY 181 (536)
T ss_pred EEEEEcCC-ChhhhcCCCCceEEEEEEEEEEeee-----C-CCCCEEEEEeCCCc-EEEEEECCCCEEEEEc
Confidence 22222222 1111111001012224789987742 2 35899999998886 9999999999999998
|
|
| >PRK05637 anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-14 Score=140.29 Aligned_cols=178 Identities=16% Similarity=0.161 Sum_probs=104.7
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCCCc
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRG 376 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~rg 376 (524)
.+|++++.|.+ ...|+.+.|+..|+.+.+. +.+. . ..+. ..++|||||+||||++.
T Consensus 2 ~~il~iD~~ds---f~~nl~~~l~~~g~~~~v~------~~~~-~-------------~~~l~~~~~~~iIlsgGPg~~~ 58 (208)
T PRK05637 2 THVVLIDNHDS---FVYNLVDAFAVAGYKCTVF------RNTV-P-------------VEEILAANPDLICLSPGPGHPR 58 (208)
T ss_pred CEEEEEECCcC---HHHHHHHHHHHCCCcEEEE------eCCC-C-------------HHHHHhcCCCEEEEeCCCCCHH
Confidence 36999964432 4578999999999888775 3221 0 0112 24789999999999984
Q ss_pred hhH-HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcc-cccceee
Q 009814 377 VQG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTM-RLGSRRT 454 (524)
Q Consensus 377 ~eg-~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~Ggtm-rLg~~~v 454 (524)
..+ ..+.++.+. .++|+||||+|||+|+.++|+++.... .+.. .-.++ .+. +.|.+- -++..++
T Consensus 59 d~~~~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~~----~~~G--~~~~i-~~~------~~~~~~~l~~~~~~ 124 (208)
T PRK05637 59 DAGNMMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPCG----PVHG--TTDNM-ILT------DAGVQSPVFAGLAT 124 (208)
T ss_pred HhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccCC----cccc--eEEEe-EEC------CCCCCCcccCCCCc
Confidence 333 244555444 479999999999999999999996421 1110 00011 110 001000 0011111
Q ss_pred EeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCC--CCeEEEEEECCCcEEEEec
Q 009814 455 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET--SQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 455 ~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~d--g~~VE~iE~~~hp~f~vqy 523 (524)
.+.++ ...+.+.+..+. .-|+++| ..+ ..|+++.|.+.+ +..+++++.++.|+++|||
T Consensus 125 ~~~~~---~~~~~g~~~~V~--~~H~~~v-----~~l-p~~~~vlA~s~~~~~~v~~a~~~~~~~~~GvQf 184 (208)
T PRK05637 125 DVEPD---HPEIPGRKVPIA--RYHSLGC-----VVA-PDGMESLGTCSSEIGPVIMAAETTDGKAIGLQF 184 (208)
T ss_pred ccccc---cccccCCceEEE--Eechhhh-----hcC-CCCeEEEEEecCCCCCEEEEEEECCCCEEEEEe
Confidence 11111 112222222343 3366555 333 468999998765 3468999999999999998
|
|
| >PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-15 Score=163.27 Aligned_cols=163 Identities=14% Similarity=0.197 Sum_probs=104.8
Q ss_pred EEEEeccCCCcchH-HHHHHHHHHcCCc-eeEEeeeEEeeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCCCc
Q 009814 300 IAMVGKYTGLSDAY-LSILKALLHASVD-LRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRG 376 (524)
Q Consensus 300 IaiVGkY~~~~day-~SI~~aL~~ag~~-~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~rg 376 (524)
|.+|+.|. +| .++.+.|+..|+. +.+. .+.+.+ . .+. ..++||||++||||+|.
T Consensus 2 il~idn~d----sft~nl~~~l~~~g~~~v~~~------~~~~~~-------~------~~~~~~~~d~vIlsgGP~~p~ 58 (534)
T PRK14607 2 IILIDNYD----SFTYNIYQYIGELGPEEIEVV------RNDEIT-------I------EEIEALNPSHIVISPGPGRPE 58 (534)
T ss_pred EEEEECch----hHHHHHHHHHHHcCCCeEEEE------CCCCCC-------H------HHHHhcCCCEEEECCCCCChh
Confidence 67887665 54 5789999999875 3322 222221 1 111 24789999999999972
Q ss_pred -hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 377 -VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 377 -~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
....++.++. .+.++|+||||+|||+|+.++|+++.+.+..+.. ..+++.
T Consensus 59 ~~~~~~~li~~-~~~~~PvLGIClG~QlLa~a~Gg~V~~~~~~~~G-----~~~~v~----------------------- 109 (534)
T PRK14607 59 EAGISVEVIRH-FSGKVPILGVCLGHQAIGYAFGGKIVHAKRILHG-----KTSPID----------------------- 109 (534)
T ss_pred hCCccHHHHHH-hhcCCCEEEEcHHHHHHHHHcCCeEecCCccccC-----CceeEE-----------------------
Confidence 2233455665 3678999999999999999999999664432111 111111
Q ss_pred eccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.... +....+- ....+ .+.|+|.|+...+ ..++++.+.+.++. +|+++++++|+++|||
T Consensus 110 ~~~~-~lf~~~~-~~~~v--~~~Hs~~v~~~~l----p~~~~vlA~s~d~~-i~a~~~~~~pi~GvQF 168 (534)
T PRK14607 110 HNGK-GLFRGIP-NPTVA--TRYHSLVVEEASL----PECLEVTAKSDDGE-IMGIRHKEHPIFGVQF 168 (534)
T ss_pred ECCC-cchhcCC-CCcEE--eeccchheecccC----CCCeEEEEEcCCCC-EEEEEECCCCEEEEEe
Confidence 1111 1111110 01122 4779988864323 35899999998776 9999999999999998
|
|
| >PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=139.29 Aligned_cols=172 Identities=15% Similarity=0.108 Sum_probs=99.9
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg- 376 (524)
++|+++ ||+ .. ++.|+.++|+..|+++.+. . ++ +.+.++|+||+|| +|.+.
T Consensus 1 m~i~ii-d~g-~g-n~~s~~~~l~~~g~~~~~v------~-----------~~-------~~~~~~d~iIlPG-~G~~~~ 52 (196)
T PRK13170 1 MNVVII-DTG-CA-NLSSVKFAIERLGYEPVVS------R-----------DP-------DVILAADKLFLPG-VGTAQA 52 (196)
T ss_pred CeEEEE-eCC-Cc-hHHHHHHHHHHCCCeEEEE------C-----------CH-------HHhCCCCEEEECC-CCchHH
Confidence 479999 687 33 8999999999998766654 1 11 4567899999977 55542
Q ss_pred -hhHH--HHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCC-CCCcCCCCCcccccce
Q 009814 377 -VQGK--ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMP-EGSKTHMGGTMRLGSR 452 (524)
Q Consensus 377 -~eg~--i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~-e~~~~~~GgtmrLg~~ 452 (524)
.... ...++.+++.++|+||||+|||+|+.+++... +.+. .+ -.+..|..+.. ..+.+|+||+
T Consensus 53 ~~~~l~~~~l~~~i~~~~~PilGIClG~Qll~~~~~~~~-~~~~-----lg-~~~g~v~~~~~~~~~~p~~G~~------ 119 (196)
T PRK13170 53 AMDQLRERELIDLIKACTQPVLGICLGMQLLGERSEESG-GVDC-----LG-IIDGPVKKMTDFGLPLPHMGWN------ 119 (196)
T ss_pred HHHHHHHcChHHHHHHcCCCEEEECHHHHHHhhhcccCC-CCCC-----cc-cccEEEEECCCCCCCCCccccc------
Confidence 1111 12344555668999999999999998874321 0000 00 01122322221 2356788886
Q ss_pred eeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 453 RTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 453 ~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
++.+.++ +.+.+-. ..+..-.|.|+|++.++ ....+.+.++. .-+..+.+.+++.+||
T Consensus 120 ~v~~~~~-~~l~~~l--~~~~~v~~~Hs~~lp~~---------~~~la~s~~~~-~~~~~~~~~~i~G~QF 177 (196)
T PRK13170 120 QVTPQAG-HPLFQGI--EDGSYFYFVHSYAMPVN---------EYTIAQCNYGE-PFSAAIQKDNFFGVQF 177 (196)
T ss_pred eeEeCCC-ChhhhCC--CcCCEEEEECeeecCCC---------CcEEEEecCCC-eEEEEEEcCCEEEEEC
Confidence 2233233 2111111 11222358899987432 23456666655 3334456678999998
|
|
| >CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=141.63 Aligned_cols=179 Identities=17% Similarity=0.181 Sum_probs=106.0
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg- 376 (524)
++|+++ +|+ .. +..|+.++|+.+|+++.+. +. + +.+.++|+|++|| +|++.
T Consensus 2 ~~v~ii-d~~-~G-N~~sl~~al~~~g~~v~vv------~~-----------~-------~~l~~~d~iIlPG-~g~~~~ 53 (210)
T CHL00188 2 MKIGII-DYS-MG-NLHSVSRAIQQAGQQPCII------NS-----------E-------SELAQVHALVLPG-VGSFDL 53 (210)
T ss_pred cEEEEE-EcC-Cc-cHHHHHHHHHHcCCcEEEE------cC-----------H-------HHhhhCCEEEECC-CCchHH
Confidence 479999 697 33 7899999999999877654 11 0 3456799999887 55532
Q ss_pred ----h--hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeC--CCCCcCCCCCcc-
Q 009814 377 ----V--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFM--PEGSKTHMGGTM- 447 (524)
Q Consensus 377 ----~--eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~--~e~~~~~~Ggtm- 447 (524)
+ .+....++.+.++++|+||||+|||+|+-.+..... .. -.-.+..|..+. +..+++|+||+.
T Consensus 54 ~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~-----~g---lg~~~G~v~~~~~~~~~~~p~~Gw~~v 125 (210)
T CHL00188 54 AMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKE-----EG---LGIYKGQVKRLKHSPVKVIPHMGWNRL 125 (210)
T ss_pred HHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCc-----CC---ccceeEEEEECCCCCCCccCccCCccc
Confidence 1 256678888888999999999999999855433210 00 001233343332 224689999983
Q ss_pred cccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 448 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 448 rLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
++-.....-.+. ++...+ .....-.+.|+|.+.|.. ..-+..+....++..+.+++. .++|.|||
T Consensus 126 ~~~~~~~~~~~~-~lf~~l---~~~~~v~~~HS~~v~p~~-----~~~l~~t~~~~~~~~v~a~~~--~~i~GvQF 190 (210)
T CHL00188 126 ECQNSECQNSEW-VNWKAW---PLNPWAYFVHSYGVMPKS-----QACATTTTFYGKQQMVAAIEY--DNIFAMQF 190 (210)
T ss_pred eecCCcccccCC-hhhcCC---CCCCEEEEeCccEecCCC-----CceEEEEEecCCcceEEEEec--CCEEEEec
Confidence 221110000000 111111 112222467999886531 112444444433345889986 39999998
|
|
| >PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.8e-14 Score=136.70 Aligned_cols=178 Identities=17% Similarity=0.189 Sum_probs=103.5
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc--h
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--V 377 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg--~ 377 (524)
|+|+ ||+ .. +-.|+.+||+..+.+.... . +| +.+.++|+|++||+ |.+. +
T Consensus 2 i~ii-dyg-~g-Nl~s~~~al~~~~~~~~~~------~-----------~~-------~~l~~~d~iIlPG~-g~~~~~~ 53 (210)
T PRK14004 2 IAIL-DYG-MG-NIHSCLKAVSLYTKDFVFT------S-----------DP-------ETIENSKALILPGD-GHFDKAM 53 (210)
T ss_pred EEEE-ECC-Cc-hHHHHHHHHHHcCCeEEEE------C-----------CH-------HHhccCCEEEECCC-CchHHHH
Confidence 7889 698 44 8899999999998755432 1 11 45679999999995 5431 1
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCC-CCCcCCCCCcccccc
Q 009814 378 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMP-EGSKTHMGGTMRLGS 451 (524)
Q Consensus 378 -----eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~-e~~~~~~GgtmrLg~ 451 (524)
.|....++.+.+.++|+||||+|||+|+-+++-..-+. ++.+.+.=.-.+..|..+.. ..+++|+||+.-
T Consensus 54 ~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~e~~~~~-~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v--- 129 (210)
T PRK14004 54 ENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSEETNQGT-KKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRL--- 129 (210)
T ss_pred HHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcccccCCC-cCcccCCcceeEEEEEEcCCCCCcCCccCcccc---
Confidence 36778888888889999999999999996553210000 00000000001233333311 246799999821
Q ss_pred eeeEec--cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCC-CCeEEEEEECCCcEEEEec
Q 009814 452 RRTYFQ--IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-SQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 452 ~~v~l~--~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~d-g~~VE~iE~~~hp~f~vqy 523 (524)
.+. .+.++...+ .....-.|.|+|.+++. .-+..++.+.+ +..+-++. .+.++|.+||
T Consensus 130 ---~~~~~~~~~lf~~l---~~~~~v~~~HS~~~~~~-------~~l~~sa~~~~~g~~~~a~~-~~~~i~GvQF 190 (210)
T PRK14004 130 ---QIRRKDKSKLLKGI---GDQSFFYFIHSYRPTGA-------EGNAITGLCDYYQEKFPAVV-EKENIFGTQF 190 (210)
T ss_pred ---eeccCCCCccccCC---CCCCEEEEeceeecCCC-------CcceEEEeeeECCEEEEEEE-ecCCEEEEeC
Confidence 111 110111111 11122258899865331 12456676666 54344444 6789999998
|
|
| >cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Probab=99.56 E-value=7e-14 Score=134.44 Aligned_cols=129 Identities=20% Similarity=0.215 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-c----------------
Q 009814 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-G---------------- 376 (524)
Q Consensus 314 ~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-g---------------- 376 (524)
.++.++|+.+|+.+.+. +...- ..+....+.++||||+|||++.. .
T Consensus 22 ~~~~~~l~~~G~~~~iv------~~~~~-----------~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~ 84 (189)
T cd01745 22 QYYVDAVRKAGGLPVLL------PPVDD-----------EEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPE 84 (189)
T ss_pred HHHHHHHHHCCCEEEEe------CCCCC-----------hHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChh
Confidence 46789999999876554 21110 00011346789999999998541 1
Q ss_pred -hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 377 -VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 377 -~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
....+..++++.+.++|+||||+|||+|+.++|+++.+.+
T Consensus 85 r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~--------------------------------------- 125 (189)
T cd01745 85 RDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQDI--------------------------------------- 125 (189)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcCC---------------------------------------
Confidence 1234788899999999999999999999999999873211
Q ss_pred eccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECC-CcEEEEec
Q 009814 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNY-KIAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~-hp~f~vqy 523 (524)
.++ +.|+++| ..+ ..++++++.+.|+. +|++++++ .++++|||
T Consensus 126 ----------------~v~--~~H~~~v-----~~~-~~~~~vla~~~d~~-vea~~~~~~~~~~gvQf 169 (189)
T cd01745 126 ----------------RVN--SLHHQAI-----KRL-ADGLRVEARAPDGV-IEAIESPDRPFVLGVQW 169 (189)
T ss_pred ----------------cee--chHHHHH-----hhc-CCCCEEEEECCCCc-EEEEEeCCCCeEEEEec
Confidence 011 3476655 333 46899999987764 99999998 69999998
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine |
| >PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-14 Score=137.67 Aligned_cols=106 Identities=23% Similarity=0.292 Sum_probs=72.6
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--ch
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--GV 377 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r--g~ 377 (524)
|+++ +|+ .. +..|+.+||++.|+++.+. .. | +.+.++|+|++||+ |.. ..
T Consensus 2 i~ii-dyg-~g-N~~s~~~al~~~g~~~~~v------~~-----------~-------~~l~~~D~lIlPG~-g~~~~~~ 53 (192)
T PRK13142 2 IVIV-DYG-LG-NISNVKRAIEHLGYEVVVS------NT-----------S-------KIIDQAETIILPGV-GHFKDAM 53 (192)
T ss_pred EEEE-EcC-Cc-cHHHHHHHHHHcCCCEEEE------eC-----------H-------HHhccCCEEEECCC-CCHHHHH
Confidence 7888 698 33 8899999999988766543 21 1 45778999999985 332 11
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccC----CCCCCCeeeeCCCCCcCCCCCcc
Q 009814 378 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFD----PNTKNPCVIFMPEGSKTHMGGTM 447 (524)
Q Consensus 378 -----eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~----~~~~~pVi~l~~e~~~~~~Ggtm 447 (524)
.|..++++. ..++|+||||+|||+|+-.. +|.. .-.+..|..+.++.+++|+||+.
T Consensus 54 ~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~------------~eg~~~GLgll~~~V~rf~~~~~vph~GWn~ 118 (192)
T PRK13142 54 SEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEHS------------DEGDASGLGFIPGNISRIQTEYPVPHLGWNN 118 (192)
T ss_pred HHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhhc------------ccCCcCccCceeEEEEECCCCCCCCcccccc
Confidence 245666666 46899999999999999442 1210 01244555654446789999983
|
|
| >PRK00074 guaA GMP synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=152.09 Aligned_cols=161 Identities=19% Similarity=0.232 Sum_probs=105.3
Q ss_pred EEEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhcc--CCCEEEECCCCCCC
Q 009814 299 RIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNR 375 (524)
Q Consensus 299 ~IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~--~~DGIllpGGfG~r 375 (524)
+|+++ ||+. .| .+|.++|+.+|+.+.+. +.+. .+ +.+. ++||||+||||.+.
T Consensus 5 ~i~vl-D~Gs---q~~~li~r~lrelg~~~~v~------p~~~--------~~-------~~l~~~~~dgIIlsGGp~sv 59 (511)
T PRK00074 5 KILIL-DFGS---QYTQLIARRVRELGVYSEIV------PYDI--------SA-------EEIRAFNPKGIILSGGPASV 59 (511)
T ss_pred EEEEE-ECCC---CcHHHHHHHHHHCCCeEEEE------ECCC--------CH-------HHHhccCCCEEEECCCCccc
Confidence 68999 5873 34 46889999999876664 2211 01 2232 56999999999865
Q ss_pred chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 376 g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
-.++.....+.+.+.++|+||||+|||+|+.++|+++...+ ..|+ |.+++.
T Consensus 60 ~~~~~p~~~~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~~---~~e~--------------------------G~~~i~ 110 (511)
T PRK00074 60 YEEGAPRADPEIFELGVPVLGICYGMQLMAHQLGGKVERAG---KREY--------------------------GRAELE 110 (511)
T ss_pred ccCCCccccHHHHhCCCCEEEECHHHHHHHHHhCCeEEecC---Cccc--------------------------ceEEEE
Confidence 22222333456677899999999999999999999884321 1121 122333
Q ss_pred eccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.++ +.+.+-...+ ..-.+.|+++|. .+ ..|+++.+.+.++. ++++++.+.|+++|||
T Consensus 111 i~~~-~~Lf~~l~~~--~~v~~~H~d~V~-----~l-p~g~~vlA~s~~~~-v~ai~~~~~~i~GvQF 168 (511)
T PRK00074 111 VDND-SPLFKGLPEE--QDVWMSHGDKVT-----EL-PEGFKVIASTENCP-IAAIANEERKFYGVQF 168 (511)
T ss_pred EcCC-ChhhhcCCCc--eEEEEECCeEEE-----ec-CCCcEEEEEeCCCC-EEEEEeCCCCEEEEeC
Confidence 3333 2222212111 222467888763 22 45899999998765 9999999999999998
|
|
| >PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-13 Score=130.48 Aligned_cols=169 Identities=22% Similarity=0.203 Sum_probs=99.8
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch--
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~-- 377 (524)
|+++ ||+ .+ +-.|+.++|+..|+++.+. .. + +.+.++|+||+|| +|.+..
T Consensus 2 i~ii-d~g-~~-n~~~v~~~l~~~g~~~~~~------~~-----------~-------~~l~~~d~lilPG-~g~~~~~~ 53 (201)
T PRK13152 2 IALI-DYK-AG-NLNSVAKAFEKIGAINFIA------KN-----------P-------KDLQKADKLLLPG-VGSFKEAM 53 (201)
T ss_pred EEEE-ECC-CC-cHHHHHHHHHHCCCeEEEE------CC-----------H-------HHHcCCCEEEECC-CCchHHHH
Confidence 7888 698 33 6699999999998764432 21 1 3567899999987 444311
Q ss_pred -----hHHHHHHHH-HHHcCCCEEEEhHhHHHHHHH-hccccccccCCCCcccCCCCCCCeeeeCC--CCCcCCCCCccc
Q 009814 378 -----QGKILAAKY-AREHRIPYLGICLGMQVAVIE-FARSVLNLRDANSTEFDPNTKNPCVIFMP--EGSKTHMGGTMR 448 (524)
Q Consensus 378 -----eg~i~air~-are~~iP~LGICLGmQll~ie-~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~--e~~~~~~Ggtmr 448 (524)
.+....++. +.+.++|+||||+|||+|+.+ .++.. .++-. . .+..|..+.. ....+|+||+
T Consensus 54 ~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~--~~~lg--~----~~g~v~~~~~~~~~~~~~~g~~-- 123 (201)
T PRK13152 54 KNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGV--CEGLG--F----IEGEVVKFEEDLNLKIPHMGWN-- 123 (201)
T ss_pred HHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhcccccCC--cCCcc--c----ccEEEEECCCCCCCcCCccCeE--
Confidence 123445544 568899999999999999976 11111 01100 0 1223333211 1234566654
Q ss_pred ccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCC-eEEEEEECCCcEEEEec
Q 009814 449 LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ-RMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 449 Lg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~-~VE~iE~~~hp~f~vqy 523 (524)
++.+.++ +.+.+..+ ......+.|+|.+.. . ...+++.+.++. .+++++ +.+++.|||
T Consensus 124 ----~v~~~~~-~~l~~~l~--~~~~~~~vHS~~v~~--~------~~~v~a~~~~g~~~~~a~~--~~~i~GvQF 182 (201)
T PRK13152 124 ----ELEILKQ-SPLYQGIP--EKSDFYFVHSFYVKC--K------DEFVSAKAQYGHKFVASLQ--KDNIFATQF 182 (201)
T ss_pred ----EEEECCC-ChhhhCCC--CCCeEEEEcccEeec--C------CCcEEEEECCCCEEEEEEe--cCCEEEEeC
Confidence 4555555 43433332 123335789998853 1 135778777664 455666 568999998
|
|
| >PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-13 Score=131.70 Aligned_cols=172 Identities=20% Similarity=0.177 Sum_probs=101.2
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
++|+++ +|+ .. +..|+.++|+..|+++ ++.|+.. | +.+.++|||||||+....
T Consensus 2 ~~~~ii-d~g-~g-n~~s~~~al~~~g~~~----~v~~~~~-----------~-------~~l~~~d~lIlpG~~~~~~~ 56 (209)
T PRK13146 2 MTVAII-DYG-SG-NLRSAAKALERAGAGA----DVVVTAD-----------P-------DAVAAADRVVLPGVGAFADC 56 (209)
T ss_pred CeEEEE-ECC-CC-hHHHHHHHHHHcCCCc----cEEEECC-----------H-------HHhcCCCEEEECCCCcHHHH
Confidence 589999 598 43 6789999999999864 2334331 1 457899999999963321
Q ss_pred --ch--hHHHHHH-HHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCC-----CCCCCeeeeCC---CCCcCC
Q 009814 376 --GV--QGKILAA-KYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP-----NTKNPCVIFMP---EGSKTH 442 (524)
Q Consensus 376 --g~--eg~i~ai-r~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~-----~~~~pVi~l~~---e~~~~~ 442 (524)
.+ .+..+++ +.+.++++|+||||+|||+|+-+ +.|+.. -.+..|..+.+ ..+.+|
T Consensus 57 ~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~------------~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~ 124 (209)
T PRK13146 57 MRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFER------------GLEHGDTPGLGLIPGEVVRFQPDGPALKVPH 124 (209)
T ss_pred HHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhc------------ccccCCCCCcceEeEEEEEcCCCCCCCccCc
Confidence 11 1334444 44556899999999999999954 111100 01112222111 124577
Q ss_pred CCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEe
Q 009814 443 MGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLN 522 (524)
Q Consensus 443 ~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vq 522 (524)
+||+. +.+.++ +.+.+-.. ......|.|+|.|.+. . +..+.+.+..+..+.++.. +.+++.||
T Consensus 125 ~G~~~------v~~~~~-~~lf~~~~--~~~~v~~~Hs~~v~~~------~-~~~~la~s~~~~~~~a~~~-~~~i~GvQ 187 (209)
T PRK13146 125 MGWNT------VDQTRD-HPLFAGIP--DGARFYFVHSYYAQPA------N-PADVVAWTDYGGPFTAAVA-RDNLFATQ 187 (209)
T ss_pred cChHH------eeeCCC-ChhccCCC--CCCEEEEEeEEEEEcC------C-CCcEEEEEcCCCEEEEEEe-cCCEEEEE
Confidence 88762 233233 21221111 1223357899988532 1 2356677766655677654 57999999
Q ss_pred c
Q 009814 523 Y 523 (524)
Q Consensus 523 y 523 (524)
|
T Consensus 188 F 188 (209)
T PRK13146 188 F 188 (209)
T ss_pred c
Confidence 8
|
|
| >PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=133.71 Aligned_cols=174 Identities=19% Similarity=0.279 Sum_probs=109.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHH-HcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALL-HASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~-~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r- 375 (524)
++|+++ .|.... .-.++.+||+ .+|+++... |... ..+.++|+|++|||++..
T Consensus 1 ~~v~Vl-~~~G~n-~~~d~~~a~~~~~G~~~~~v----~~~~-------------------~~l~~~D~lvipGG~~~~d 55 (219)
T PRK03619 1 MKVAVI-VFPGSN-CDRDMARALRDLLGAEPEYV----WHKE-------------------TDLDGVDAVVLPGGFSYGD 55 (219)
T ss_pred CEEEEE-ecCCcC-hHHHHHHHHHhcCCCeEEEE----ecCc-------------------CCCCCCCEEEECCCCchhh
Confidence 368888 465432 4567789998 888765432 3211 236688999999998531
Q ss_pred --------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH--hccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCC
Q 009814 376 --------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGG 445 (524)
Q Consensus 376 --------g~eg~i~air~are~~iP~LGICLGmQll~ie--~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~Gg 445 (524)
.....+.+++.+.++++|++|||.|+|+|+-+ +.+.+.. ..+.+|.
T Consensus 56 ~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~---n~~~~~~--------------------- 111 (219)
T PRK03619 56 YLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTR---NASLKFI--------------------- 111 (219)
T ss_pred hhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEE---cCCCcEE---------------------
Confidence 12456777888888999999999999999964 3332210 1111110
Q ss_pred cccccceeeEeccCCcccccccC-Ccc-ee-eeeeccccccChhhHHhhhcCCeE---EEEEeCCCCeEEEEEECC-C-c
Q 009814 446 TMRLGSRRTYFQIKDCKSAKLYG-NRT-FI-DERHRHRYEVNPDMIARLENAGLS---FTGKDETSQRMEVWTFNY-K-I 517 (524)
Q Consensus 446 tmrLg~~~v~l~~g~s~~~~iYg-~~~-~I-~erhrHrYeVn~~~v~~l~~~Gl~---~sg~~~dg~~VE~iE~~~-h-p 517 (524)
-....+.+.+..+.+.+.|+ +.. .+ ..-|+|||++|+++++.+++.|+. +++.++||...++.++.+ | .
T Consensus 112 ---~~~v~v~i~~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~~~ 188 (219)
T PRK03619 112 ---CRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVNEKGN 188 (219)
T ss_pred ---EEEEEEEECCCCChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCCCCCC
Confidence 00011122221133333341 111 12 235899999999999999999977 666779998888888876 3 6
Q ss_pred EEEEec
Q 009814 518 AVLLNY 523 (524)
Q Consensus 518 ~f~vqy 523 (524)
++.+|+
T Consensus 189 ~~g~~~ 194 (219)
T PRK03619 189 VLGMMP 194 (219)
T ss_pred EEEEeC
Confidence 777776
|
|
| >PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-13 Score=129.11 Aligned_cols=171 Identities=20% Similarity=0.221 Sum_probs=102.9
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCC-Cc--
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-RG-- 376 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~-rg-- 376 (524)
|+++ +|+ .. +-.++.++|+..|+++.+. . .+ +.+.++|||++|||... ..
T Consensus 2 i~~~-d~~-~~-~~~~i~~~l~~~G~~v~~~------~-----------~~-------~~l~~~d~iiipG~~~~~~~~~ 54 (205)
T PRK13141 2 IAII-DYG-MG-NLRSVEKALERLGAEAVIT------S-----------DP-------EEILAADGVILPGVGAFPDAMA 54 (205)
T ss_pred EEEE-EcC-Cc-hHHHHHHHHHHCCCeEEEE------C-----------CH-------HHhccCCEEEECCCCchHHHHH
Confidence 6777 587 22 4478999999999877764 1 11 35678999999985321 11
Q ss_pred ---hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhcc--ccccccCCCCcccCCCCCCCeeeeCC--CCCcCCCCCcccc
Q 009814 377 ---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR--SVLNLRDANSTEFDPNTKNPCVIFMP--EGSKTHMGGTMRL 449 (524)
Q Consensus 377 ---~eg~i~air~are~~iP~LGICLGmQll~ie~gr--~v~gl~~a~S~Ef~~~~~~pVi~l~~--e~~~~~~GgtmrL 449 (524)
..+..+.++.+.++++|+||||+|||+|+.++.. .+-++.. .+..|..... +...+| .
T Consensus 55 ~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~---------l~g~v~~~~~~~~~~~~~------~ 119 (205)
T PRK13141 55 NLRERGLDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGL---------LPGRVRRFPPEEGLKVPH------M 119 (205)
T ss_pred HHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccce---------EEEEEEEcCCCCCCcccE------e
Confidence 1356788888888999999999999999976411 1100000 0111111100 011122 3
Q ss_pred cceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 450 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 450 g~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
|.+.+.+.++ +.+.+.+.....+ .+.|+|.+.+ ..++.+.+.+.++..++++.. +.++|.|||
T Consensus 120 g~~~i~~~~~-~~l~~~l~~~~~v--~~~Hs~~v~~-------~~~~~v~a~~~~~~~~~a~~~-~~~i~GvQf 182 (205)
T PRK13141 120 GWNQLELKKE-SPLLKGIPDGAYV--YFVHSYYADP-------CDEEYVAATTDYGVEFPAAVG-KDNVFGAQF 182 (205)
T ss_pred cCccceeCCC-ChhhhCCCCCCEE--EEECeeEecc-------CCcCeEEEEEeCCcEEEEEEe-cCCEEEEeC
Confidence 3445555444 4344433212223 3568888843 245778888877756888865 669999998
|
|
| >cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=137.91 Aligned_cols=172 Identities=20% Similarity=0.257 Sum_probs=96.3
Q ss_pred HHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC----chhHHHHHHHHHHHc
Q 009814 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR----GVQGKILAAKYAREH 390 (524)
Q Consensus 315 SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r----g~eg~i~air~are~ 390 (524)
|-+++++.+|+.+.. .+++++. +. ..+.+..+||||+|||+-+. -..-....++.|++.
T Consensus 24 ~Yv~~l~~aG~~vvp----i~~~~~~---~~----------l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~ 86 (273)
T cd01747 24 SYVKFLESAGARVVP----IWINESE---EY----------YDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALER 86 (273)
T ss_pred HHHHHHHHCCCeEEE----EEeCCcH---HH----------HHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHh
Confidence 457899999986543 2444321 01 12457889999999998543 122233455666665
Q ss_pred C-----CCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCccccc
Q 009814 391 R-----IPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAK 465 (524)
Q Consensus 391 ~-----iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~ 465 (524)
+ +|+||||||||+|+.++|+++..+....+ + +...|+. +.++.. ...| +..-.+.+.+
T Consensus 87 ~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~~~~~-~---~~~~~l~-~t~~~~----~s~l--------F~~~p~~l~~ 149 (273)
T cd01747 87 NDAGDYFPVWGTCLGFELLTYLTSGETLLLEATEA-T---NSALPLN-FTEDAL----QSRL--------FKRFPPDLLK 149 (273)
T ss_pred hhcCCCCcEEEEcHHHHHHHHHhCCCccccCCCcc-c---cceEEEE-Eccccc----cChh--------hhcCCHHHHH
Confidence 4 89999999999999999986522111111 0 1111211 111000 0000 0000000000
Q ss_pred ccCCcceeeeeeccccccChhhHHh---hhcCCeEEEEEeCC--CC-eEEEEEECCCcEEEEec
Q 009814 466 LYGNRTFIDERHRHRYEVNPDMIAR---LENAGLSFTGKDET--SQ-RMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 466 iYg~~~~I~erhrHrYeVn~~~v~~---l~~~Gl~~sg~~~d--g~-~VE~iE~~~hp~f~vqy 523 (524)
... ...+ -.|+|+|.|.++..+. | ...+++.+.+.| |. .|.++|+.++|+|+|||
T Consensus 150 ~l~-~~~~-~~~~Hs~~v~~~~~~~~~~l-~~~~~vla~~~d~~g~~fis~ie~~~~pi~gvQF 210 (273)
T cd01747 150 SLA-TEPL-TMNNHRYGISPENFTENGLL-SDFFNVLTTNDDWNGVEFISTVEAYKYPIYGVQW 210 (273)
T ss_pred HHh-cccH-HHhhcccccCHhhccccccc-ccceEEEEEEecCCCceEEEEEEecCCceEEEec
Confidence 010 1112 2589999998865432 2 234688888766 32 36899999999999998
|
Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >PRK09065 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-13 Score=134.76 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=85.0
Q ss_pred hccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeee
Q 009814 359 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVI 433 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~r-----g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~ 433 (524)
.+.++|||||+||+.+. -+....+.++.+.+.++|+||||+|||+|+.++|++|...+. ..|
T Consensus 51 ~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~--g~e----------- 117 (237)
T PRK09065 51 APDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPA--GRE----------- 117 (237)
T ss_pred ChhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccCCC--CCc-----------
Confidence 35678999999999763 235567888999999999999999999999999999853211 011
Q ss_pred eCCCCCcCCCCCcccccceeeEeccCCcccccccCC-cceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEE
Q 009814 434 FMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN-RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWT 512 (524)
Q Consensus 434 l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~-~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE 512 (524)
.|.+++.+.+. .....++.+ ...+.-.+.|+++|. .+ ..|+++.+.+.++. +++++
T Consensus 118 ---------------~G~~~v~~~~~-~~~~~l~~~~~~~~~v~~~H~d~v~-----~l-p~~~~~la~s~~~~-iqa~~ 174 (237)
T PRK09065 118 ---------------SGTVTVELHPA-AADDPLFAGLPAQFPAHLTHLQSVL-----RL-PPGAVVLARSAQDP-HQAFR 174 (237)
T ss_pred ---------------cceEEEEEccc-cccChhhhcCCccCcEeeehhhhhh-----hC-CCCCEEEEcCCCCC-eeEEE
Confidence 12233333321 111112211 111222355776653 23 46899999988876 99999
Q ss_pred ECCCcEEEEec
Q 009814 513 FNYKIAVLLNY 523 (524)
Q Consensus 513 ~~~hp~f~vqy 523 (524)
+++ ++|+|||
T Consensus 175 ~~~-~i~gvQf 184 (237)
T PRK09065 175 YGP-HAWGVQF 184 (237)
T ss_pred eCC-CEEEEEe
Confidence 987 5999998
|
|
| >PLN02889 oxo-acid-lyase/anthranilate synthase | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.2e-13 Score=151.41 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=67.5
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHc-CCceeEEeeeEEeeCCCccccccCCChhhhhHHHH---hccCCCEEEECCCC
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK---LLKGADGILVPGGF 372 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~a-g~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~---~l~~~DGIllpGGf 372 (524)
.++|.+|+.|.++. +++.+.|+.. |..+.+. ..+++.. .+... .+..+|||||+|||
T Consensus 81 ~~~iLlIDnyDSfT---yNL~~~L~~~~g~~~~Vv------~nd~~~~----------~~~~~~~~~~~~~d~IVlSPGP 141 (918)
T PLN02889 81 FVRTLLIDNYDSYT---YNIYQELSIVNGVPPVVV------RNDEWTW----------EEVYHYLYEEKAFDNIVISPGP 141 (918)
T ss_pred cceEEEEeCCCchH---HHHHHHHHHhcCCCEEEE------eCCCCCH----------HHHHhhhhcccCCCEEEECCCC
Confidence 37899999887332 5788999888 8776554 2222110 00101 14579999999999
Q ss_pred CCCchh---HH-HHHHHHHHHcCCCEEEEhHhHHHHHHHhcccccccc
Q 009814 373 GNRGVQ---GK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (524)
Q Consensus 373 G~rg~e---g~-i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~ 416 (524)
|.|... |. ++.++.+ .++|+||||||||+|+.+||++|.+.+
T Consensus 142 G~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~ 187 (918)
T PLN02889 142 GSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAP 187 (918)
T ss_pred CCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCC
Confidence 998432 22 2333322 479999999999999999999997644
|
|
| >cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=124.22 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=88.8
Q ss_pred hccCCCEEEECCCCCCC------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCee
Q 009814 359 LLKGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCV 432 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~r------g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi 432 (524)
.+.++|||++|||+.+. ......+.++++.++++|+||||+|||+++.++|+++...+.. .
T Consensus 43 ~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~~--~----------- 109 (188)
T cd01741 43 DLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPKG--W----------- 109 (188)
T ss_pred CcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCCc--c-----------
Confidence 46789999999998764 2356788899999999999999999999999999988543221 0
Q ss_pred eeCCCCCcCCCCCcccccceeeEeccCCcccccccCC-cceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEE
Q 009814 433 IFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN-RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVW 511 (524)
Q Consensus 433 ~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~-~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~i 511 (524)
..|.+++.+.+. .....++.+ ...+...+.|+++|.. + ..|+++.+.+.++. ++++
T Consensus 110 ---------------~~g~~~v~~~~~-~~~~~l~~~~~~~~~v~~~H~~~v~~-----l-p~~~~~la~~~~~~-v~~~ 166 (188)
T cd01741 110 ---------------EIGWFPVTLTEA-GKADPLFAGLPDEFPVFHWHGDTVVE-----L-PPGAVLLASSEACP-NQAF 166 (188)
T ss_pred ---------------eeEEEEEEeccc-cccCchhhcCCCcceEEEEeccChhh-----C-CCCCEEeecCCCCC-cceE
Confidence 112233343332 111122211 1223335778888753 3 45889999988776 9999
Q ss_pred EECCCcEEEEec
Q 009814 512 TFNYKIAVLLNY 523 (524)
Q Consensus 512 E~~~hp~f~vqy 523 (524)
+.+ .+++.+||
T Consensus 167 ~~~-~~~~g~Qf 177 (188)
T cd01741 167 RYG-DRALGLQF 177 (188)
T ss_pred Eec-CCEEEEcc
Confidence 998 79999998
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine |
| >PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=126.62 Aligned_cols=81 Identities=35% Similarity=0.507 Sum_probs=61.9
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc---
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--- 376 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg--- 376 (524)
|+++ ||+. . +..++.++|+..|+++.+. .. + +.+.++|+||+||| |+++
T Consensus 2 i~vi-d~g~-g-n~~~~~~~l~~~g~~v~~~------~~-----------~-------~~l~~~d~lilpG~-g~~~~~~ 53 (199)
T PRK13181 2 IAII-DYGA-G-NLRSVANALKRLGVEAVVS------SD-----------P-------EEIAGADKVILPGV-GAFGQAM 53 (199)
T ss_pred EEEE-eCCC-C-hHHHHHHHHHHCCCcEEEE------cC-----------h-------HHhccCCEEEECCC-CCHHHHH
Confidence 7888 6873 2 7889999999999876553 11 1 35678999999885 4431
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 377 ----~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
..+..+.++.+++.++|+||||+|||+|+.++
T Consensus 54 ~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~ 89 (199)
T PRK13181 54 RSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESS 89 (199)
T ss_pred HHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhc
Confidence 12556788888899999999999999999874
|
|
| >PRK06490 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-12 Score=126.17 Aligned_cols=166 Identities=18% Similarity=0.187 Sum_probs=105.8
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg 376 (524)
+.+|.++-.|. .. .-.++.+.|+..|..+.+. ....++. .| +.+.++||+||+||+++..
T Consensus 7 ~~~vlvi~h~~-~~-~~g~l~~~l~~~g~~~~v~----~~~~~~~-------~p-------~~l~~~dgvii~Ggp~~~~ 66 (239)
T PRK06490 7 KRPVLIVLHQE-RS-TPGRVGQLLQERGYPLDIR----RPRLGDP-------LP-------DTLEDHAGAVIFGGPMSAN 66 (239)
T ss_pred CceEEEEecCC-CC-CChHHHHHHHHCCCceEEE----eccCCCC-------CC-------CcccccCEEEEECCCCCCC
Confidence 45777775554 22 4456788888888877764 1111110 11 3467899999999998751
Q ss_pred -----hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccc
Q 009814 377 -----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGS 451 (524)
Q Consensus 377 -----~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~ 451 (524)
+...++.|+.+.+.++|+||||+|||+|+.++|++|.+.+... .++| .
T Consensus 67 d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~---------------------~e~G------~ 119 (239)
T PRK06490 67 DPDDFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPDGR---------------------VEIG------Y 119 (239)
T ss_pred CCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCCC---------------------Cccc------e
Confidence 3456788888899999999999999999999999995532110 0112 2
Q ss_pred eeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 452 RRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 452 ~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+++.+.+....... . ...+ .|-|++.+ .+ ..|+.+.+.+.+.. ++++++.+ +++.+||
T Consensus 120 ~~i~~~~~~~~~~~-~--~~~~--~~~H~d~~------~l-P~~~~~LA~s~~~~-~qa~~~~~-~v~g~Qf 177 (239)
T PRK06490 120 YPLRPTEAGRALMH-W--PEMV--YHWHREGF------DL-PAGAELLATGDDFP-NQAFRYGD-NAWGLQF 177 (239)
T ss_pred EEeEECCCcccccC-C--CCEE--EEECCccc------cC-CCCCEEEEeCCCCC-eEEEEeCC-CEEEEee
Confidence 23333222011100 0 1112 35576652 22 35788889887776 99999976 6999998
|
|
| >PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.1e-13 Score=145.48 Aligned_cols=165 Identities=15% Similarity=0.144 Sum_probs=100.1
Q ss_pred eEEEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhc--cCCCEEEECCCCCC
Q 009814 298 VRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGN 374 (524)
Q Consensus 298 v~IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l--~~~DGIllpGGfG~ 374 (524)
.+|.+++.|. +| +++.+.|+..|+.+.+.-+..+ .+. ..+.+ .++|+||++||||.
T Consensus 2 ~~iLiIDn~d----sft~nl~~~lr~~g~~v~V~~~~~~--~~~---------------~~~~l~~~~~~~IIlSpGPg~ 60 (531)
T PRK09522 2 ADILLLDNID----SFTYNLADQLRSNGHNVVIYRNHIP--AQT---------------LIERLATMSNPVLMLSPGPGV 60 (531)
T ss_pred CeEEEEeCCC----hHHHHHHHHHHHCCCCEEEEECCCC--Ccc---------------CHHHHHhcCcCEEEEcCCCCC
Confidence 4789997665 55 4788999999987776521110 000 01222 46889999999999
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceee
Q 009814 375 RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 454 (524)
Q Consensus 375 rg~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v 454 (524)
|...+....+......++|+||||||||+|+.+||++|...+...+ ..+... .|.+
T Consensus 61 p~d~~~~~~i~~~~~~~iPILGIClG~QlLa~a~GG~V~~~~~~~~--------G~~~~i------~~~~---------- 116 (531)
T PRK09522 61 PSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGEILH--------GKASSI------EHDG---------- 116 (531)
T ss_pred hhhCCCCHHHHHHHhcCCCEEEEcHHHHHHHHhcCCEEEeCCceee--------eeEEEE------eecC----------
Confidence 8433333233222345899999999999999999999954211000 000000 0100
Q ss_pred EeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 455 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 455 ~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
. ++...+- .+..+. +-|++.|. .+ ..++++.+. .|+ .++++++++.|++.|||
T Consensus 117 ----~-~lf~~~~-~~~~v~--~~Hs~~v~-----~l-P~~l~vlA~-sd~-~v~ai~~~~~~i~GVQF 169 (531)
T PRK09522 117 ----Q-AMFAGLT-NPLPVA--RYHSLVGS-----NI-PAGLTINAH-FNG-MVMAVRHDADRVCGFQF 169 (531)
T ss_pred ----C-ccccCCC-CCcEEE--Eehheecc-----cC-CCCcEEEEe-cCC-CEEEEEECCCCEEEEEe
Confidence 0 1111111 122333 44777763 23 458999986 455 49999999999999998
|
|
| >cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS) | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-12 Score=124.04 Aligned_cols=170 Identities=21% Similarity=0.216 Sum_probs=98.7
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch--
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~-- 377 (524)
|+++ +|+ .. +-.++.++|+.+|+++.+. +.. +.+.++|+|++||| |.+..
T Consensus 1 i~i~-d~g-~~-~~~~~~~~l~~~g~~v~v~------~~~------------------~~l~~~d~iiipG~-~~~~~~~ 52 (198)
T cd01748 1 IAII-DYG-MG-NLRSVANALERLGAEVIIT------SDP------------------EEILSADKLILPGV-GAFGDAM 52 (198)
T ss_pred CEEE-eCC-CC-hHHHHHHHHHHCCCeEEEE------cCh------------------HHhccCCEEEECCC-CcHHHHH
Confidence 4667 587 22 6678899999999877765 210 34678999999875 44421
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh--ccccccccCCCCcccCCCCCCCeeeeCC--CCCcCCCCCccc
Q 009814 378 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEF--ARSVLNLRDANSTEFDPNTKNPCVIFMP--EGSKTHMGGTMR 448 (524)
Q Consensus 378 -----eg~i~air~are~~iP~LGICLGmQll~ie~--gr~v~gl~~a~S~Ef~~~~~~pVi~l~~--e~~~~~~Ggtmr 448 (524)
.+..+.++.+.++++|+||||+|||+|+.++ ++.+-++. -.+..|..... ..+.+++|++
T Consensus 53 ~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg---------~~~g~v~~~~~~~~~~~~~~G~~-- 121 (198)
T cd01748 53 ANLRERGLIEALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLG---------LIPGKVVRFPASEGLKVPHMGWN-- 121 (198)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccccccCCCCCCCC---------CcceEEEECCCCCCceEEEeccc--
Confidence 3567889999999999999999999999763 11100000 00111211110 0112344543
Q ss_pred ccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 449 LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 449 Lg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.+.+.+++.++..+- ....-.|.|+|.|.+. ..+.+.+.+.++..+.+ ...+.+++.|||
T Consensus 122 ----~v~~~~~~~lf~~l~---~~~~v~~~Hs~~v~~~-------~~~~~la~s~~~~~~~~-~~~~~~i~GvQF 181 (198)
T cd01748 122 ----QLEITKESPLFKGIP---DGSYFYFVHSYYAPPD-------DPDYILATTDYGGKFPA-AVEKDNIFGTQF 181 (198)
T ss_pred ----eEEECCCChhhhCCC---CCCeEEEEeEEEEecC-------CcceEEEEecCCCeEEE-EEEcCCEEEEEC
Confidence 344433312222221 1222347899988531 12556777766653444 356789999998
|
Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.9e-12 Score=121.70 Aligned_cols=172 Identities=19% Similarity=0.222 Sum_probs=100.9
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
++|.++ +|+ .. +-.++.++|+.+|+.+.+. +. + +.+.++|||++|||....
T Consensus 1 ~~~~v~-~~~-~~-~~~~~~~~l~~~G~~~~~~------~~-----------~-------~~~~~~d~iii~G~~~~~~~ 53 (200)
T PRK13143 1 MMIVII-DYG-VG-NLRSVSKALERAGAEVVIT------SD-----------P-------EEILDADGIVLPGVGAFGAA 53 (200)
T ss_pred CeEEEE-ECC-Cc-cHHHHHHHHHHCCCeEEEE------CC-----------H-------HHHccCCEEEECCCCCHHHH
Confidence 368888 586 33 4478899999999876653 11 1 346789999999853322
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCC--CCCCCeeeeCCCCCcCCCCCcccccc
Q 009814 376 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP--NTKNPCVIFMPEGSKTHMGGTMRLGS 451 (524)
Q Consensus 376 --g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~--~~~~pVi~l~~e~~~~~~GgtmrLg~ 451 (524)
..+...+.++.+.++++|+||||+|||+|+.++.. .+.... -....+.........++ .|.
T Consensus 54 ~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~~~~---------g~~~~~lg~~~g~v~~~~~~~~~~~------~g~ 118 (200)
T PRK13143 54 MENLSPLRDVILEAARSGKPFLGICLGMQLLFESSEE---------GGGVRGLGLFPGRVVRFPAGVKVPH------MGW 118 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhhhcc---------CCCCCCcceeeEEEEEcCCCCCCCe------ecc
Confidence 23456788899999999999999999999976421 000000 00111111110011122 244
Q ss_pred eeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 452 RRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 452 ~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+.+..+ +.+.+-.. ...+ .+.|+|.+.+ ..++.+.+.+.++..+++.... .|++.+||
T Consensus 119 ~~v~~~~~-~~l~~~l~-~~~~--~~~Hs~~~~~-------~~~~~~la~~~~~~~~~~~~~~-~~~~gvQf 178 (200)
T PRK13143 119 NTVKVVKD-CPLFEGID-GEYV--YFVHSYYAYP-------DDEDYVVATTDYGIEFPAAVCN-DNVFGTQF 178 (200)
T ss_pred eEEEEcCC-ChhhccCC-CcEE--EEEeeeeeCC-------CCcceEEEEEcCCCEEEEEEEc-CCEEEEeC
Confidence 44554444 32221111 2222 3568887753 2346788888776545555554 59999998
|
|
| >PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-12 Score=126.80 Aligned_cols=119 Identities=17% Similarity=0.241 Sum_probs=79.7
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
++|+++.-. .++.++.++|+++|+++... . .| +.+.++|||+|||||++.
T Consensus 2 m~igVLa~q----G~~~e~~~aL~~lG~ev~~v------~-----------~~-------~~L~~~DgLILPGGfs~~~~ 53 (248)
T PLN02832 2 MAIGVLALQ----GSFNEHIAALRRLGVEAVEV------R-----------KP-------EQLEGVSGLIIPGGESTTMA 53 (248)
T ss_pred cEEEEEeCC----CchHHHHHHHHHCCCcEEEe------C-----------CH-------HHhccCCEEEeCCCHHHHHH
Confidence 579999633 48889999999999876543 1 11 467899999999998763
Q ss_pred c---hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhc------cccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCc
Q 009814 376 G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFA------RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 446 (524)
Q Consensus 376 g---~eg~i~air~are~~iP~LGICLGmQll~ie~g------r~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~Ggt 446 (524)
. ..+..+.++.+.++++|+||||+|||+|+-..- +..+|.-+..-.. ......+..+....+++|+||+
T Consensus 54 ~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~R--N~~g~qv~sfe~~l~ip~~gwn 131 (248)
T PLN02832 54 KLAERHNLFPALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHR--NFFGSQINSFETELPVPELAAS 131 (248)
T ss_pred HHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHHhcccccCCcceeCCccceEEe--cccCceeEeEEcCCcCCccccc
Confidence 1 136788888888889999999999999985531 1112222211000 0122344445445678999997
|
|
| >PRK07053 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=123.19 Aligned_cols=165 Identities=17% Similarity=0.159 Sum_probs=104.3
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
.+|.++ ...... ...++.++|+..|..+.+. .....+.. . ..+.++|||||+||+...
T Consensus 3 ~~ilvi-qh~~~e-~~g~i~~~L~~~g~~~~v~----~~~~~~~~------~--------~~~~~~d~lii~Ggp~~~~d 62 (234)
T PRK07053 3 KTAVAI-RHVAFE-DLGSFEQVLGARGYRVRYV----DVGVDDLE------T--------LDALEPDLLVVLGGPIGVYD 62 (234)
T ss_pred ceEEEE-ECCCCC-CChHHHHHHHHCCCeEEEE----ecCCCccC------C--------CCccCCCEEEECCCCCCCCC
Confidence 356666 454433 5667899999999776654 11111110 0 135679999999998642
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCccccc
Q 009814 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 450 (524)
Q Consensus 376 -----g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg 450 (524)
-+...++.++.+.+.++|+||||+|||+++.++|++|.. ....|+ |
T Consensus 63 ~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~---~~~~e~--------------------------G 113 (234)
T PRK07053 63 DELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYP---GGQKEI--------------------------G 113 (234)
T ss_pred CCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEec---CCCCeE--------------------------e
Confidence 345778899999999999999999999999999999843 111121 2
Q ss_pred ceeeEeccCC--cccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 451 SRRTYFQIKD--CKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 451 ~~~v~l~~g~--s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
..++.+.+.. ..+..+- ......|-|++.+. + ..|....+.++... ++++... ..++.+||
T Consensus 114 ~~~i~~t~~g~~~pl~~~~---~~~~~~~~H~d~~~------l-P~ga~~La~s~~~~-~qaf~~g-~~~~g~Qf 176 (234)
T PRK07053 114 WAPLTLTDAGRASPLRHLG---AGTPVLHWHGDTFD------L-PEGATLLASTPACR-HQAFAWG-NHVLALQF 176 (234)
T ss_pred EEEEEEeccccCChhhcCC---CcceEEEEeCCEEe------c-CCCCEEEEcCCCCC-eeEEEeC-CCEEEEee
Confidence 2222222210 0011110 11222466776652 2 35788888887665 8999985 57999998
|
|
| >TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=122.36 Aligned_cols=173 Identities=23% Similarity=0.305 Sum_probs=104.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCC--C
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN--R 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~--r 375 (524)
++|+++ +|.... ...++.++|+.+|+.+... |... ..+.++|+|++|||+.. .
T Consensus 1 ~~v~Vl-~~~G~n-~~~~~~~al~~~G~~~~~i----~~~~-------------------~~l~~~d~lilpGG~~~~d~ 55 (227)
T TIGR01737 1 MKVAVI-RFPGTN-CDRDTVYALRLLGVDAEIV----WYED-------------------GSLPDYDGVVLPGGFSYGDY 55 (227)
T ss_pred CeEEEE-eCCCcC-cHHHHHHHHHHCCCeEEEE----ecCC-------------------CCCCCCCEEEECCCCccccc
Confidence 368888 464322 3456789999999876543 3221 12567899999999843 1
Q ss_pred ---c----hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH--hccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCc
Q 009814 376 ---G----VQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 446 (524)
Q Consensus 376 ---g----~eg~i~air~are~~iP~LGICLGmQll~ie--~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~Ggt 446 (524)
+ .....+.++.+.++++|+||||.|+|+|+.+ +.+.+.. ..+.+|... |.
T Consensus 56 ~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~---n~~~~~~~~------------------~~ 114 (227)
T TIGR01737 56 LRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALLP---NDSLRFICR------------------WV 114 (227)
T ss_pred ccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCceee---cCCCceEEE------------------eE
Confidence 1 2346678888888999999999999999964 4433211 112222110 00
Q ss_pred ccccceeeEeccCCcccccccCC-c---ceeeeeeccccccChhhHHhhhcCCe-EEEEEe----------CCC--CeEE
Q 009814 447 MRLGSRRTYFQIKDCKSAKLYGN-R---TFIDERHRHRYEVNPDMIARLENAGL-SFTGKD----------ETS--QRME 509 (524)
Q Consensus 447 mrLg~~~v~l~~g~s~~~~iYg~-~---~~I~erhrHrYeVn~~~v~~l~~~Gl-~~sg~~----------~dg--~~VE 509 (524)
.+++.+..+.+.+-+.. . ..|. -..|||.++++.+++|++.+. .+...+ +|| ..|.
T Consensus 115 ------~~~v~~~~~~~~~~~~~g~~~~~pi~-H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~ 187 (227)
T TIGR01737 115 ------YLRVENADTIFTKNYKKGEVIRIPIA-HGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGNIA 187 (227)
T ss_pred ------EEEECCCCChhhccCCCCCEEEEEeE-cCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHc
Confidence 00111100111111110 1 1122 133699999998888887775 444434 676 4688
Q ss_pred EEEECCCcEEEEec
Q 009814 510 VWTFNYKIAVLLNY 523 (524)
Q Consensus 510 ~iE~~~hp~f~vqy 523 (524)
+|+.++.++|.+|+
T Consensus 188 ~i~~~~~~~~g~~~ 201 (227)
T TIGR01737 188 GIVNERGNVLGMMP 201 (227)
T ss_pred ccCCCCCCEEEEec
Confidence 99999999999997
|
In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea. |
| >PRK07567 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=122.92 Aligned_cols=127 Identities=14% Similarity=0.144 Sum_probs=81.8
Q ss_pred hccCCCEEEECCCCCCCch------------h-HHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCC
Q 009814 359 LLKGADGILVPGGFGNRGV------------Q-GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP 425 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~rg~------------e-g~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~ 425 (524)
.+.++|||||+||+++... . ....+++.+.++++|+||||+|||+|+.++|++|.+ . ...|
T Consensus 48 ~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~-~--~g~e--- 121 (242)
T PRK07567 48 DLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR-T--YGEP--- 121 (242)
T ss_pred CHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec-C--CCCc---
Confidence 3567899999999976411 1 123466777789999999999999999999999853 1 1111
Q ss_pred CCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCC-cceeeeeeccccccChhhHHhhhcCCeEEEEEeCC
Q 009814 426 NTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN-RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET 504 (524)
Q Consensus 426 ~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~-~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~d 504 (524)
.|.+++.+.+. .....++.+ .......|-|++.|. .+ ..|+++.+.+.+
T Consensus 122 -----------------------~G~~~v~l~~~-g~~~~l~~~~~~~~~~~~~H~d~V~-----~l-p~~~~vlA~s~~ 171 (242)
T PRK07567 122 -----------------------VGAVTVSLTDA-GRADPLLAGLPDTFTAFVGHKEAVS-----AL-PPGAVLLATSPT 171 (242)
T ss_pred -----------------------CccEEEEECCc-cCCChhhcCCCCceEEEeehhhhhh-----hC-CCCCEEEEeCCC
Confidence 12233333321 111112110 112333466876653 23 468999999877
Q ss_pred CCeEEEEEECCCcEEEEec
Q 009814 505 SQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 505 g~~VE~iE~~~hp~f~vqy 523 (524)
.. ++++++.+ ++++|||
T Consensus 172 ~~-vqa~~~~~-~~~gvQf 188 (242)
T PRK07567 172 CP-VQMFRVGE-NVYATQF 188 (242)
T ss_pred CC-EEEEEeCC-CEEEEEe
Confidence 65 99999976 5999997
|
|
| >PRK01077 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.6e-11 Score=126.90 Aligned_cols=89 Identities=21% Similarity=0.285 Sum_probs=63.0
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r- 375 (524)
+++||++ ..-.+.-.|..-.++|+..|+++. |+++-. + +.+.++|+|++|||+...
T Consensus 245 ~~~iava-~d~af~f~y~e~~~~L~~~g~~~~------~~~~~~--~--------------~~l~~~D~lilpGG~~~~~ 301 (451)
T PRK01077 245 GVRIAVA-RDAAFNFYYPENLELLRAAGAELV------FFSPLA--D--------------EALPDCDGLYLGGGYPELF 301 (451)
T ss_pred CceEEEE-ecCcccccHHHHHHHHHHCCCEEE------EeCCcC--C--------------CCCCCCCEEEeCCCchhhH
Confidence 3799998 343343345666789988776543 444311 0 235588999999997431
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 376 -----g~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
...+..+.++.+.++++|++|||-|+|+|+-.+
T Consensus 302 ~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 302 AAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 224678999999999999999999999998554
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=135.58 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=105.9
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg 376 (524)
..+|+++ ||+ .. +-.|+.++|+.+|+++.+. .. | +.+.++|+||+|||. +.+
T Consensus 6 ~~~i~ii-DyG-~G-N~~sl~~al~~~G~~v~~v------~~-----------~-------~~l~~~D~lIlpG~g-s~~ 57 (538)
T PLN02617 6 DSEVTLL-DYG-AG-NVRSVRNAIRHLGFTIKDV------QT-----------P-------EDILNADRLIFPGVG-AFG 57 (538)
T ss_pred CCeEEEE-ECC-CC-CHHHHHHHHHHCCCeEEEE------CC-----------h-------hhhccCCEEEECCCC-CHH
Confidence 4689999 698 43 7789999999999876432 21 1 356789999998843 432
Q ss_pred h-------hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhc--cccccccCCCCcccCCCCCCCeeeeCC--CCCcCCCCC
Q 009814 377 V-------QGKILAAKYAREHRIPYLGICLGMQVAVIEFA--RSVLNLRDANSTEFDPNTKNPCVIFMP--EGSKTHMGG 445 (524)
Q Consensus 377 ~-------eg~i~air~are~~iP~LGICLGmQll~ie~g--r~v~gl~~a~S~Ef~~~~~~pVi~l~~--e~~~~~~Gg 445 (524)
. .+..+.++.+.+.++|+||||+|||+|+.++. +.+.|+.- .+..|..+.. ..+.+|+||
T Consensus 58 ~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~---------l~G~v~~~~~~~~~~vp~iGw 128 (538)
T PLN02617 58 SAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGV---------IPGVVGRFDSSNGLRVPHIGW 128 (538)
T ss_pred HHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCccc---------ccceEEECCccCCCCCCeecc
Confidence 1 35678889888999999999999999997641 11211110 1122333211 135688898
Q ss_pred cccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeC-CCCeEEEEEECCCcEEEEec
Q 009814 446 TMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE-TSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 446 tmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~-dg~~VE~iE~~~hp~f~vqy 523 (524)
+. +.+..+ +.+.+-+. ...+ .|.|+|.+.+. + ..+..+.+.+. ++..+++++.. +++.|||
T Consensus 129 ~~------V~~~~~-spL~~~l~-~~~v--y~vHSy~v~~~--p---~~~~~v~a~~~~g~~~IaAI~~g--nI~GVQF 190 (538)
T PLN02617 129 NA------LQITKD-SELLDGVG-GRHV--YFVHSYRATPS--D---ENKDWVLATCNYGGEFIASVRKG--NVHAVQF 190 (538)
T ss_pred eE------EEecCC-ChhHhcCC-CcEE--EEEeEEEEEec--C---CCCcEEEEEEccCCCcEEEEEeC--CEEEEEc
Confidence 72 223333 22222222 2222 47899986331 1 22333444444 23469999974 8999998
|
|
| >KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=132.18 Aligned_cols=177 Identities=23% Similarity=0.249 Sum_probs=104.5
Q ss_pred CCeEEEEEeccCCCcchH-HHHHHHHHHc-CCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhcc---CCCEEEECC
Q 009814 296 EPVRIAMVGKYTGLSDAY-LSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK---GADGILVPG 370 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day-~SI~~aL~~a-g~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~---~~DGIllpG 370 (524)
.++++.+++.|. +| .+|.++|..+ +....+.+...|.-+ ++|+.+. .+|+|+|..
T Consensus 13 ~rl~~LlID~YD----SyTfNiy~ll~~~~~vp~V~~vh~~~~~~----------------d~~~~l~q~~~FDaIVVgP 72 (767)
T KOG1224|consen 13 PRLRTLLIDNYD----SYTFNIYQLLSTINGVPPVVIVHDEWTWE----------------DAYHYLYQDVAFDAIVVGP 72 (767)
T ss_pred hheeEEEEeccc----chhhhHHHHHHHhcCCCcEEEEeccccCH----------------HHHHHHhhccccceEEecC
Confidence 458999999886 55 5888888766 455556556666432 2344443 489999999
Q ss_pred CCCCCchhHHHHHHHHHHH--cCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCccc
Q 009814 371 GFGNRGVQGKILAAKYARE--HRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 448 (524)
Q Consensus 371 GfG~rg~eg~i~air~are--~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~Ggtmr 448 (524)
|||.|....-+..+-...+ +.||+||||||||.|+++.|+.|.- ++- ..|--+.-+ .| .++.+
T Consensus 73 GPG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~hGA~v~~---~n~------p~HGrvs~i-----~~-~~~~~ 137 (767)
T KOG1224|consen 73 GPGSPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVH---ANE------PVHGRVSGI-----EH-DGNIL 137 (767)
T ss_pred CCCCCCcHHHHHHHHHHHHhcCCCceeeeehhhHhHhhhcccceec---CCC------cccceeeeE-----Ee-cCcEE
Confidence 9999932222222222222 3599999999999999999998831 111 001000000 11 11211
Q ss_pred ccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 449 LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 449 Lg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+. | +..=|....... |+ |+-.+|+.-++.+. .-.+-.+.+|.++..+.+++.|+|.+||
T Consensus 138 -------f~-g---i~sg~~~~fK~~-RY-HSL~in~~pid~l~---il~t~~ddng~ilMsi~~~~fPhfG~qy 196 (767)
T KOG1224|consen 138 -------FS-G---IPSGRNSDFKVV-RY-HSLIINSLPIDLLP---ILWTIYDDNGHILMSIMHSSFPHFGLQY 196 (767)
T ss_pred -------Ec-c---CCCCCcccceeE-Ee-EEEEecCCchhhhc---ceeEeecCCceEEEEeeccCCCccceee
Confidence 11 1 111121112222 45 88889986555431 1223344556699999999999999999
|
|
| >TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-11 Score=116.29 Aligned_cols=81 Identities=26% Similarity=0.375 Sum_probs=57.8
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch--
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 377 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~-- 377 (524)
|+++ +|+ . .+-.++.++|+..|+++.+. .. + +.+.++|+|++|| +|++..
T Consensus 1 ~~~~-~~~-~-gn~~~l~~~l~~~g~~v~v~------~~-----------~-------~~l~~~d~lii~G-~~~~~~~~ 52 (196)
T TIGR01855 1 IVII-DYG-V-GNLGSVKRALKRVGAEPVVV------KD-----------S-------KEAELADKLILPG-VGAFGAAM 52 (196)
T ss_pred CEEE-ecC-C-cHHHHHHHHHHHCCCcEEEE------cC-----------H-------HHhccCCEEEECC-CCCHHHHH
Confidence 4677 576 2 27788999999999887765 11 0 3467899999988 444421
Q ss_pred ---hHH-HHHH-HHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 378 ---QGK-ILAA-KYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 378 ---eg~-i~ai-r~are~~iP~LGICLGmQll~ie~ 408 (524)
... ++.+ +.+.+.++|+||||+|||+|+-++
T Consensus 53 ~~l~~~~~~~l~~~~~~~~~pvlGiC~G~Qll~~~~ 88 (196)
T TIGR01855 53 ARLRENGLDLFVELVVRLGKPVLGICLGMQLLFERS 88 (196)
T ss_pred HHHHHcCcHHHHHHHHhCCCCEEEECHHHHHhhhcc
Confidence 110 3444 777888999999999999999763
|
This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6. |
| >PRK05665 amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-10 Score=114.86 Aligned_cols=126 Identities=14% Similarity=0.091 Sum_probs=81.3
Q ss_pred hccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeee
Q 009814 359 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVI 433 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~r-----g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~ 433 (524)
.+.++||||++||+.+. -+....+.++.+.++++|+||||+|||+|+.++|++|...+.+ -|
T Consensus 54 ~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G--~e----------- 120 (240)
T PRK05665 54 DDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQG--WG----------- 120 (240)
T ss_pred CcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCC--cc-----------
Confidence 35679999999998764 3456678888888999999999999999999999999542211 01
Q ss_pred eCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEE
Q 009814 434 FMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTF 513 (524)
Q Consensus 434 l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~ 513 (524)
.|.+++.+.+...+. .-. ...+.--|-|+-+| ..+ ..|.+..+.++... +++++.
T Consensus 121 ---------------~G~~~~~~~~~~~~~-~~~--~~~~~~~~~H~D~V-----~~L-P~ga~~La~s~~~~-~q~~~~ 175 (240)
T PRK05665 121 ---------------VGIHRYQLAAHAPWM-SPA--VTELTLLISHQDQV-----TAL-PEGATVIASSDFCP-FAAYHI 175 (240)
T ss_pred ---------------cceEEEEecCCCccc-cCC--CCceEEEEEcCCee-----eeC-CCCcEEEEeCCCCc-EEEEEe
Confidence 111122221110000 000 11122235566444 333 45888889887766 999987
Q ss_pred CCCcEEEEec
Q 009814 514 NYKIAVLLNY 523 (524)
Q Consensus 514 ~~hp~f~vqy 523 (524)
.+ +++++||
T Consensus 176 ~~-~~~g~Qf 184 (240)
T PRK05665 176 GD-QVLCFQG 184 (240)
T ss_pred CC-CEEEEec
Confidence 65 6999997
|
|
| >TIGR00379 cobB cobyrinic acid a,c-diamide synthase | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.1e-10 Score=120.20 Aligned_cols=89 Identities=25% Similarity=0.286 Sum_probs=61.6
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r- 375 (524)
+++||++- .-.+.--|..=+++|+..|+++ .|+++-. . +.+.++|+|++|||+..-
T Consensus 244 ~~~Iava~-d~afnFy~~~~~~~L~~~g~~~------~~~~~~~--d--------------~~l~~~d~l~ipGG~~~~~ 300 (449)
T TIGR00379 244 YVRIAVAQ-DQAFNFYYQDNLDALTHNAAEL------VPFSPLE--D--------------TELPDVDAVYIGGGFPELF 300 (449)
T ss_pred CcEEEEEe-chhhceeHHHHHHHHHHCCCEE------EEECCcc--C--------------CCCCCCCEEEeCCcHHHHH
Confidence 47999983 3323223445568888776543 3444310 0 235588999999998542
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 376 -----g~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
.-.++.++++.+.+++.|+||||-|||+|+-.+
T Consensus 301 ~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 301 AEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 124678899999999999999999999999543
|
This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation. |
| >PRK13527 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=110.92 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-----chhHHHHHHHHHH
Q 009814 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKYAR 388 (524)
Q Consensus 314 ~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-----g~eg~i~air~ar 388 (524)
.++.++|+.+|.++.+. ++.. + +.+.++|+|++|||++.. ...+..+.++.+.
T Consensus 17 ~~~~~~l~~~g~~~~~~----~~~~-----------~-------~~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~ 74 (200)
T PRK13527 17 DALKRALDELGIDGEVV----EVRR-----------P-------GDLPDCDALIIPGGESTTIGRLMKREGILDEIKEKI 74 (200)
T ss_pred HHHHHHHHhcCCCeEEE----EeCC-----------h-------HHhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHH
Confidence 46778888888766543 2211 1 356789999999998864 2235688899888
Q ss_pred HcCCCEEEEhHhHHHHHHHhccc
Q 009814 389 EHRIPYLGICLGMQVAVIEFARS 411 (524)
Q Consensus 389 e~~iP~LGICLGmQll~ie~gr~ 411 (524)
++++|+||||+|||+|+-++++.
T Consensus 75 ~~~~pilGIC~G~Qll~~~~gg~ 97 (200)
T PRK13527 75 EEGLPILGTCAGLILLAKEVGDD 97 (200)
T ss_pred HCCCeEEEECHHHHHHHhhhcCC
Confidence 89999999999999999998874
|
|
| >PRK13525 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=110.58 Aligned_cols=86 Identities=22% Similarity=0.317 Sum_probs=64.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
++|+++.-. .+|.+..++|+.+|..+... +. | +.+.++|||++|||++..
T Consensus 2 m~~~i~~~~----g~~~~~~~~l~~~g~~~~~~------~~-----------~-------~~l~~~dgiii~GG~~~~~~ 53 (189)
T PRK13525 2 MKIGVLALQ----GAVREHLAALEALGAEAVEV------RR-----------P-------EDLDEIDGLILPGGESTTMG 53 (189)
T ss_pred CEEEEEEcc----cCHHHHHHHHHHCCCEEEEe------CC-----------h-------hHhccCCEEEECCCChHHHH
Confidence 467777423 37888889999988776543 21 1 356789999999998653
Q ss_pred c---hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccc
Q 009814 376 G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 411 (524)
Q Consensus 376 g---~eg~i~air~are~~iP~LGICLGmQll~ie~gr~ 411 (524)
. .....+.++.+.++++|+||||+|+|+|+-++++.
T Consensus 54 ~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~ 92 (189)
T PRK13525 54 KLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKEIEGY 92 (189)
T ss_pred HHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhhcccC
Confidence 1 12345788888999999999999999999888774
|
|
| >COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=112.27 Aligned_cols=163 Identities=21% Similarity=0.217 Sum_probs=98.4
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcC-CceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag-~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
+|.|+ +++. ....-|.+.++..| ....+. .| +.+ .+ . -...++|||+|+|||-+.
T Consensus 3 ~ilIl-d~g~--q~~~li~r~~re~g~v~~e~~---~~-~~~-~~--~------------~~~~~~~giIlsGgp~sv~~ 60 (198)
T COG0518 3 KILIL-DFGG--QYLGLIARRLRELGYVYSEIV---PY-TGD-AE--E------------LPLDSPDGIIISGGPMSVYD 60 (198)
T ss_pred EEEEE-eCCC--cHhHHHHHHHHHcCCceEEEE---eC-CCC-cc--c------------ccccCCCEEEEcCCCCCCcc
Confidence 57787 5653 24456788999888 444332 11 110 00 0 123567999999999653
Q ss_pred -c--hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccce
Q 009814 376 -G--VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 452 (524)
Q Consensus 376 -g--~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~ 452 (524)
+ ..-....|+.+...++|+||||+|||+|+-++|++|.. ++..|++. .
T Consensus 61 ~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~---~~~~E~G~--------------------------~ 111 (198)
T COG0518 61 EDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVER---GPKREIGW--------------------------T 111 (198)
T ss_pred ccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEec---cCCCccce--------------------------E
Confidence 3 44556666666666667999999999999999999943 22244422 2
Q ss_pred eeEeccCCc-ccccccCCcc-eeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 453 RTYFQIKDC-KSAKLYGNRT-FIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 453 ~v~l~~g~s-~~~~iYg~~~-~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
++.+.++.+ +..-+- ... .+. |-|+ +.+.++ ..|+++.|.+++-. ++++++. .+++.|||
T Consensus 112 ~v~~~~~~~~l~~gl~-~~~~~v~--~sH~-----D~v~~l-P~g~~vlA~s~~cp-~qa~~~~-~~~~gvQF 173 (198)
T COG0518 112 PVELTEGDDPLFAGLP-DLFTTVF--MSHG-----DTVVEL-PEGAVVLASSETCP-NQAFRYG-KRAYGVQF 173 (198)
T ss_pred EEEEecCccccccCCc-cccCccc--cchh-----CccccC-CCCCEEEecCCCCh-hhheecC-CcEEEEee
Confidence 222221000 000000 011 132 4453 444444 46899999877665 9999999 99999998
|
|
| >KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=108.61 Aligned_cols=170 Identities=16% Similarity=0.192 Sum_probs=106.0
Q ss_pred EEEEEeccCCCcchHHHHHHHH-HHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHH-hccCCCEEEECCCCCCCc
Q 009814 299 RIAMVGKYTGLSDAYLSILKAL-LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRG 376 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL-~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~-~l~~~DGIllpGGfG~rg 376 (524)
.|.+++.|.++. +++.+.| -..|+.+.+. ..++++.+ + ..+++++++++.|||.|.
T Consensus 20 piv~IDNYDSFT---~Nv~qYL~~e~g~~~~Vy------RNDeiTV~-------------El~~~NP~~LliSPGPG~P~ 77 (223)
T KOG0026|consen 20 PIIVIDNYDSFT---YNLCQYLMGELGCHFEVY------RNDELTVE-------------ELKRKNPRGLLISPGPGTPQ 77 (223)
T ss_pred CEEEEecccchh---HHHHHHhhhccCccEEEE------ecCcccHH-------------HHhhcCCCeEEecCCCCCCc
Confidence 477888897543 6777777 4556666654 33334321 2 246899999999999996
Q ss_pred hhHH-HHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 377 VQGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 377 ~eg~-i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
..|. .++|++.- -++|+||||+|.|+|.-+||+++. .+. | -+++-.. ..+.|-+ . -.+-
T Consensus 78 DsGIs~~~i~~f~-~~iP~fGvCMGlQCi~e~fGGkv~-----~a~-~------~i~HGK~-S~i~~D~-~-----~~~G 137 (223)
T KOG0026|consen 78 DSGISLQTVLELG-PLVPLFGVCMGLQCIGEAFGGKIV-----RSP-F------GVMHGKS-SMVHYDE-K-----GEEG 137 (223)
T ss_pred cccchHHHHHHhC-CCCceeeeehhhhhhhhhhCcEEe-----ccC-c------ceeeccc-cccccCC-c-----cccc
Confidence 4443 34566554 589999999999999999999983 221 1 0111000 0111111 0 0011
Q ss_pred eccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCc-EEEEec
Q 009814 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKI-AVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp-~f~vqy 523 (524)
+-.+ + .+..+..|+ |+.+...++++ ...|+++++.+||- +.+.+++.+. +-.|||
T Consensus 138 ~f~g------~--~q~~~V~RY-HSLa~~~sSlP---~d~L~VTawTEnG~-iMgaRHkKY~~ieGVQf 193 (223)
T KOG0026|consen 138 LFSG------L--SNPFIVGRY-HSLVIEKDSFP---SDELEVTAWTEDGL-VMAARHRKYKHIQGVQF 193 (223)
T ss_pred cccC------C--CCCeEEEee-eeeeeecccCC---ccceeeeEeccCcE-EEeeeccccccccceee
Confidence 1111 1 122233355 77766555554 45799999999986 9999999988 889998
|
|
| >PRK00784 cobyric acid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.9e-10 Score=122.61 Aligned_cols=85 Identities=26% Similarity=0.357 Sum_probs=61.2
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHH-cCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLH-ASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~-ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
+++||++ +|.... ++ .=+++|+. +|+++... ++. +.+.++|||+||||+-..
T Consensus 251 ~~~i~v~-~~~~a~-~f-~nl~~l~~~~g~~v~~~------s~~------------------~~l~~~d~lilpGg~~~~ 303 (488)
T PRK00784 251 ALRIAVI-RLPRIS-NF-TDFDPLRAEPGVDVRYV------RPG------------------EPLPDADLVILPGSKNTI 303 (488)
T ss_pred ceEEEEE-eCCCcC-Cc-cChHHHhhcCCCeEEEE------CCc------------------cccccCCEEEECCccchH
Confidence 4799999 565433 44 33678887 88765443 321 245688999999998542
Q ss_pred -ch-----hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 376 -GV-----QGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 376 -g~-----eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
.. .++.+.++.+.+++.|+||||.|||+|+-.+
T Consensus 304 ~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 304 ADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 21 2467888888899999999999999999654
|
|
| >TIGR00313 cobQ cobyric acid synthase CobQ | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.7e-10 Score=120.71 Aligned_cols=305 Identities=20% Similarity=0.252 Sum_probs=156.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCC---------Ccc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDL---------GNY 74 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldl---------g~y 74 (524)
||||| .-|+.||=++++.|.+.|+.+|++|...|== .|+= ..+|+.||+|.|-.. --+
T Consensus 1 ~~I~G-T~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~--------~~~~----~s~~~~~~~e~~~a~~~qa~a~~~~~~ 67 (475)
T TIGR00313 1 IMVVG-TTSSAGKSTLTAGLCRILARRGYRVAPFKSQ--------NMSL----NSFVTKEGGEIAIAQATQALAAGIEPS 67 (475)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHHhCCCeEEEECCc--------cccc----CccccCCCchhHHHHHHHHHhCCCCch
Confidence 57776 5599999999999999999999999988832 1221 245667776653110 012
Q ss_pred ccccCCCCCCCCc-----ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCc
Q 009814 75 ERFMDIKLTRDNN-----ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGG 149 (524)
Q Consensus 75 erf~~~~~~~~~n-----~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eigg 149 (524)
++---+-+....+ +..|+.+.....++ |.... .+..-+.|++.+.+++ .++|++|||=.|
T Consensus 68 ~~~nPv~lk~~~~~~s~~i~~g~~~~~~~a~~----~~~~~---~~~~~~~i~~~~~~l~--------~~~D~vIIEGaG 132 (475)
T TIGR00313 68 VHMNPILLKPKGNFTSQVIVHGRAVGDMNYQE----YYKNK---VDFFLKAIKESLEILA--------REYDYVVIEGAG 132 (475)
T ss_pred hccCCEEeCcCCCCcCcEEEcCcccCcCCHHH----Hhhhh---hHHHHHHHHHHHHHHH--------hcCCEEEEECCC
Confidence 2211111211111 11122111111111 11100 1233566777777775 368999999988
Q ss_pred ccccc----CcchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcC-CCcccEEEEecCCCCCc
Q 009814 150 TIGDI----ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQ-GLTPNILACRSTVALDD 224 (524)
Q Consensus 150 tvgdi----es~pf~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~-Gi~pd~lv~R~~~~l~~ 224 (524)
..-|+ +.....+-++.+.. .++.| + -+...+-. --+-+.++.++.. ++...++|+-...+-..
T Consensus 133 Gl~~~~~~~~d~s~~~lA~~l~a-----pVILV----~-d~~~g~~~--a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~ 200 (475)
T TIGR00313 133 SPAEINLLKRDLANMRIAELANA-----DAILV----A-DIDRGGVF--ASIYGTLKLLPENWRKLIKGIVINKFRGNVD 200 (475)
T ss_pred CccccccCcCCchHHHHHHHhCC-----CEEEE----E-eCCccHHH--HHHHHHHHHhChhhcCceEEEEEeccCCcHH
Confidence 77664 12233444444433 24444 1 11111111 1222344444443 36677888755443211
Q ss_pred chhccc---cccCCCCCCCeeecC-CCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhc-CCCCCeE
Q 009814 225 NVKGKL---SQFCHVPEQNIITLY-DVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICD-GLHEPVR 299 (524)
Q Consensus 225 ~~r~Ki---sLf~~v~~~~Vi~i~-dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~-~~~~~v~ 299 (524)
..+..+ .-++.+ .|++.. -.++. +|. .++.++...+. .....++
T Consensus 201 ~~~~~~~~l~e~~gi---pvLG~ip~~~~l--l~~--------------------------~e~~~~~~~~~~~~~~~~~ 249 (475)
T TIGR00313 201 VLKSGIEKLEELTGI---PVLGVLPYDENL--FPE--------------------------EDSLVIQERRSRGNAKSIR 249 (475)
T ss_pred HHHHHHHHHHHhhCC---CEEEEecCCCcC--CCh--------------------------HHhhhHHhhhccCCCCCcE
Confidence 112111 111111 122221 00111 111 11111111111 1122389
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-c--
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-G-- 376 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-g-- 376 (524)
||++ +|.... ++. =.++|+.. + .+.|++.. +.+.++|+|++|||+... .
T Consensus 250 Iav~-~~~~~~-nf~-~~~~L~~~--~-----~~~f~~~~------------------~~l~~~d~lilpGg~~~~~~~~ 301 (475)
T TIGR00313 250 IGVV-RLPRIS-NFT-DFEPLRYE--A-----FVKFLDLD------------------DSLTGCDAVIIPGSKSTIADLY 301 (475)
T ss_pred EEEE-cCCccc-Ccc-ChHHHhhC--C-----CeEEeCCc------------------cccccCCEEEECCcchHHHHHH
Confidence 9999 555443 333 35777766 2 22354432 235689999999998443 1
Q ss_pred ---hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH
Q 009814 377 ---VQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 377 ---~eg~i~air~are~~iP~LGICLGmQll~ie 407 (524)
-.++.++++.+.+++.|+||||.|||+|+-.
T Consensus 302 ~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~ 335 (475)
T TIGR00313 302 ALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKE 335 (475)
T ss_pred HHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhh
Confidence 1356788998888999999999999999954
|
|
| >PRK08250 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-09 Score=106.37 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=78.5
Q ss_pred ccCCCEEEECCCCCCCc--------h--hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCC
Q 009814 360 LKGADGILVPGGFGNRG--------V--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKN 429 (524)
Q Consensus 360 l~~~DGIllpGGfG~rg--------~--eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~ 429 (524)
+.++|||||+||+.... + ....+.++.+.++++|+||||+|+|+++.++|++|..-+. .|+
T Consensus 43 ~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~---~e~------ 113 (235)
T PRK08250 43 ADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSPE---KEI------ 113 (235)
T ss_pred ccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCCC---Cce------
Confidence 56789999999987531 1 3456788888899999999999999999999999943111 121
Q ss_pred CeeeeCCCCCcCCCCCcccccceeeEeccCC---cccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCC
Q 009814 430 PCVIFMPEGSKTHMGGTMRLGSRRTYFQIKD---CKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ 506 (524)
Q Consensus 430 pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~---s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~ 506 (524)
|..++.+.+.. .++ .-...+..+. |-|+..+ .+ ..|....+.+....
T Consensus 114 --------------------G~~~v~lt~~g~~d~l~-~~~~~~~~v~--~~H~d~~------~l-P~~a~~LA~s~~~~ 163 (235)
T PRK08250 114 --------------------GYFPITLTEAGLKDPLL-SHFGSTLTVG--HWHNDMP------GL-TDQAKVLATSEGCP 163 (235)
T ss_pred --------------------eEEEEEEccccccCchh-hcCCCCcEEE--EEeccee------cC-CCCCEEEECCCCCC
Confidence 12222222210 011 1111122233 4565432 22 45888888876554
Q ss_pred eEEEEEECCCcEEEEec
Q 009814 507 RMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 507 ~VE~iE~~~hp~f~vqy 523 (524)
++++.+.+ +++++||
T Consensus 164 -~qa~~~~~-~~~g~Qf 178 (235)
T PRK08250 164 -RQIVQYSN-LVYGFQC 178 (235)
T ss_pred -ceEEEeCC-CEEEEee
Confidence 89999865 5999997
|
|
| >TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=104.74 Aligned_cols=81 Identities=23% Similarity=0.367 Sum_probs=62.5
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC----
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---- 375 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r---- 375 (524)
|++.. ++.+|.+..++|+++|+++.+. .+ | +.+.++|+|++|||++..
T Consensus 2 igvl~----~qg~~~e~~~~l~~~g~~~~~v------~~-----------~-------~~l~~~d~liipGG~~~~~~~l 53 (184)
T TIGR03800 2 IGVLA----LQGAVREHARALEALGVEGVEV------KR-----------P-------EQLDEIDGLIIPGGESTTLSRL 53 (184)
T ss_pred EEEEE----ccCCHHHHHHHHHHCCCEEEEE------CC-----------h-------HHhccCCEEEECCCCHHHHHHH
Confidence 56654 3348889999999999876553 21 1 357789999999998763
Q ss_pred -chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 376 -GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 376 -g~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
...+....++.+.++++|+||||+|||+|+-++
T Consensus 54 ~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~~ 87 (184)
T TIGR03800 54 LDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKEI 87 (184)
T ss_pred HHhccHHHHHHHHHHcCCcEEEECHHHHHHHhhh
Confidence 123567788888899999999999999999776
|
Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase. |
| >PRK13896 cobyrinic acid a,c-diamide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-08 Score=106.81 Aligned_cols=288 Identities=18% Similarity=0.281 Sum_probs=153.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc-cccCCCCCCCccccceEEEccCCccccCCCCccccccC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP-YLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMD 79 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp-yln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~ 79 (524)
|+=|||||- =|+.||=.+++.|-+.|+.+|++|...|.-| |+ || ..|.. -..
T Consensus 1 m~~~~i~~~-~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~i--D~-----~~~~~-------------------~~g 53 (433)
T PRK13896 1 MKGFVLGGT-SSGVGKTVATLATIRALEDAGYAVQPAKAGPDFI--DP-----SHHEA-------------------VAG 53 (433)
T ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCC--CH-----HHHHH-------------------HhC
Confidence 566788875 5999999999999999999999999999877 53 43 34432 222
Q ss_pred CCCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcc
Q 009814 80 IKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM 157 (524)
Q Consensus 80 ~~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit--~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~ 157 (524)
... .| +=||.. +.|++...+ ...|++|||==|=+-|=+..
T Consensus 54 ~~~---~n-------------------------ld~~~~~~~~i~~~~~~----------~~~d~~vIEG~gGl~dg~~~ 95 (433)
T PRK13896 54 RPS---RT-------------------------LDPWLSGEDGMRRNYYR----------GEGDICVVEGVMGLYDGDVS 95 (433)
T ss_pred CCc---cc-------------------------CChhhCCHHHHHHHHHh----------hcCCEEEEECCCccccCCCC
Confidence 111 01 112222 223333221 13799999953333453323
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEeeeeeeecC-CCccccCCchhhHHHhhc---CCCcccEEEEecCCCC--C----cchh
Q 009814 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNV-VGEQKTKPTQHSVRGLRG---QGLTPNILACRSTVAL--D----DNVK 227 (524)
Q Consensus 158 pf~ea~rq~~~~~~~~n~~~ih~~~vp~~~~-~~e~ktkptq~sv~~lrs---~Gi~pd~lv~R~~~~l--~----~~~r 227 (524)
-..+-++++..- ++.| ..+ .|-.---+|=.+++++.. .++.+.++|+-...+. . +...
T Consensus 96 s~adla~~l~~P-----viLV-------v~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~~ 163 (433)
T PRK13896 96 STAMVAEALDLP-----VVLV-------VDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQRAHGGRHADGIRDALP 163 (433)
T ss_pred CHHHHHHHHCCC-----EEEE-------EcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCcHHHHHHHHHhhh
Confidence 344555555432 2222 211 121111123333344444 4899999999876542 1 1111
Q ss_pred ccccccCCCCCCCeeecCCCCccchhhHHHH-Hh----hhHHHHHhhcCCCCCCChhhHHHHHHHHHhhc----------
Q 009814 228 GKLSQFCHVPEQNIITLYDVPNIWHIPLLLR-DQ----KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICD---------- 292 (524)
Q Consensus 228 ~KisLf~~v~~~~Vi~i~dvdtiy~vpl~Lr-eq----G~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~---------- 292 (524)
+.+..+..++...-+.+ ++| +|-|..- |. ...+.+-+.++++ .+.+-..
T Consensus 164 ~~i~vlG~lP~~~~~~~---~~R-HLGLv~~~e~~~~~~~~~~~~~~~d~~------------~l~~~a~~~~~~~~~~~ 227 (433)
T PRK13896 164 DELTYFGRIPPRDDLEI---PDR-HLGLHMGSEAPLDDDALDEAAEHIDAE------------RLAAVAREPPRPEPPEE 227 (433)
T ss_pred hcCceeEecccCCCCCC---CCC-CcCCCcchhhccHHHHHHHHHHhCCHH------------HHHHHhhCCCCcccccc
Confidence 12344445544333332 344 3322111 10 0111122222221 1111100
Q ss_pred -CCCCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCC
Q 009814 293 -GLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG 371 (524)
Q Consensus 293 -~~~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGG 371 (524)
.....++||+.-|- .+.=-|..=+++|+.+ +++.-. ++ +.. +.+.++|+|++|||
T Consensus 228 ~~~~~~~~iavA~D~-AF~FyY~enl~~L~~~-aelv~f------SP--l~~--------------~~lp~~D~l~lpGG 283 (433)
T PRK13896 228 APATGDPTVAVARDA-AFCFRYPATIERLRER-ADVVTF------SP--VAG--------------DPLPDCDGVYLPGG 283 (433)
T ss_pred ccCCCCCeEEEEEcC-ccceeCHHHHHHHHhc-CcEEEE------cC--CCC--------------CCCCCCCEEEeCCC
Confidence 11123689997432 2332466667888887 544322 22 111 23557899999999
Q ss_pred CCCCc---h--hHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 372 FGNRG---V--QGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 372 fG~rg---~--eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
+-.-. + .+..+.++.+.+++.|++|||-|||+|+
T Consensus 284 ~~e~~~~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~ 322 (433)
T PRK13896 284 YPELHADALADSPALDELADRAADGLPVLGECGGLMALA 322 (433)
T ss_pred chhhHHHHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhh
Confidence 95531 1 2345888888899999999999999999
|
|
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=109.82 Aligned_cols=150 Identities=23% Similarity=0.359 Sum_probs=94.3
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECC--CCCCC--
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG--GFGNR-- 375 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpG--GfG~r-- 375 (524)
+-++ +|+. .+-.|+..||+|.|+.+... ..| .++.++|.+++|| -||.-
T Consensus 4 v~~l-d~~a--gn~~si~nal~hlg~~i~~v-----------------~~P-------~DI~~a~rLIfPGVGnfg~~~D 56 (541)
T KOG0623|consen 4 VTLL-DYGA--GNVRSIRNALRHLGFSIKDV-----------------QTP-------GDILNADRLIFPGVGNFGPAMD 56 (541)
T ss_pred EEEE-ecCC--ccHHHHHHHHHhcCceeeec-----------------cCc-------hhhccCceEeecCcccchHHHH
Confidence 4556 5862 38899999999999886543 122 4577899999999 24432
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCC-----CCCeeeeCCC-CCcCCCCCcc
Q 009814 376 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNT-----KNPCVIFMPE-GSKTHMGGTM 447 (524)
Q Consensus 376 --g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~-----~~pVi~l~~e-~~~~~~Ggtm 447 (524)
.-.|+.+.++.-.++++||+|||+|+|+|. +.|.|..+.. +.-|-.+..+ ..++|.|||-
T Consensus 57 ~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF------------~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNs 124 (541)
T KOG0623|consen 57 VLNRTGFAEPLRKYIESGKPFMGICVGLQALF------------DGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNS 124 (541)
T ss_pred HHhhhhhHHHHHHHHhcCCCeEeehhhHHHHh------------cccccCCCcCcccccccceecccCCCCcCCcccccc
Confidence 236888999999999999999999999987 5555543322 2333333222 3489999983
Q ss_pred cccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEE
Q 009814 448 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFT 499 (524)
Q Consensus 448 rLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~s 499 (524)
|.+-.+ + .++|....-.-++.|+| .|++--..++..+++++
T Consensus 125 ------c~v~sd-~---effg~~p~~~~YFVHSy-l~~ek~~~len~~wkia 165 (541)
T KOG0623|consen 125 ------CQVGSD-S---EFFGDVPNRHVYFVHSY-LNREKPKSLENKDWKIA 165 (541)
T ss_pred ------cccCCc-c---cccccCCCceEEEEeee-cccccccCCCCCCceEe
Confidence 222222 2 12211111111488888 55543334556677764
|
|
| >PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-11 Score=108.89 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=47.6
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHH
Q 009814 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIF 267 (524)
Q Consensus 202 ~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~LreqG~~~~i~ 267 (524)
.++||.++++.++|||+.++.++||+++.+|..||++++|+++.+|||| +|+++||++|.|+++|
T Consensus 66 ~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sL~~~L~~~~ipgi~gvDTR-aLt~~lR~~G~m~g~I 130 (131)
T PF00988_consen 66 EDFESDRIHVKGLIVRELSDIPSHWRSEMSLDEWLKEHGIPGISGVDTR-ALTRKLREKGSMKGVI 130 (131)
T ss_dssp GG-SSSS--BSEEE-SB--SS---TT-SB-HHHHHHHTT-EEEESS-HH-HHHHHHHHH--EEEEE
T ss_pred ccCCCCceeeeeeeeccccCCCccccccCCHHHHHHHCCCeeeeCCcHH-HHHHHHHhcCCceEEE
Confidence 4599999999999999999999999999999999999999999999999 9999999999998765
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F .... |
| >cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.9e-08 Score=97.45 Aligned_cols=78 Identities=27% Similarity=0.323 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC---c------hhH-HH
Q 009814 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---G------VQG-KI 381 (524)
Q Consensus 312 ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r---g------~eg-~i 381 (524)
.-.++..+|+.+|+++.+. |+.. .... ...+.++|||++||||... . ... ..
T Consensus 11 ~~~~~~~al~~aG~~v~~v----~~~~-~~~~-------------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~ 72 (238)
T cd01740 11 CDRDMAYAFELAGFEAEDV----WHND-LLAG-------------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLM 72 (238)
T ss_pred CHHHHHHHHHHcCCCEEEE----eccC-Cccc-------------cCCHhhCCEEEECCCCCcccccccccccccChhHH
Confidence 4567889999999877643 3321 1110 0236789999999998531 1 112 66
Q ss_pred HHHHHHHHcCCCEEEEhHhHHHHHHH
Q 009814 382 LAAKYAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 382 ~air~are~~iP~LGICLGmQll~ie 407 (524)
+.++.+.++++|+||||.|+|+|+-+
T Consensus 73 ~~l~~~~~~g~pvlGIC~G~QlL~~~ 98 (238)
T cd01740 73 EEVKEFAERGGLVLGICNGFQILVEL 98 (238)
T ss_pred HHHHHHHhCCCeEEEECcHHHHHHHc
Confidence 88899999999999999999999964
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site |
| >PRK13526 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.3e-09 Score=98.59 Aligned_cols=80 Identities=13% Similarity=0.197 Sum_probs=60.1
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
++|+++.=++ +...-.++|++.|+++.+. .+| +.+.++|+|++|||++..
T Consensus 3 ~~igVLalqG----~~~Eh~~al~~lG~~v~~v-----------------~~~-------~~l~~~D~LILPGG~~t~~~ 54 (179)
T PRK13526 3 QKVGVLAIQG----GYQKHADMFKSLGVEVKLV-----------------KFN-------NDFDSIDRLVIPGGESTTLL 54 (179)
T ss_pred cEEEEEECCc----cHHHHHHHHHHcCCcEEEE-----------------CCH-------HHHhCCCEEEECCChHHHHH
Confidence 6789987455 5566789999999875443 122 457899999999997764
Q ss_pred ---chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 376 ---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 376 ---g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
...+..+.++...+ ++|++|||.|||+|+-
T Consensus 55 ~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~ 87 (179)
T PRK13526 55 NLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSK 87 (179)
T ss_pred HHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHc
Confidence 12467888888765 6799999999999993
|
|
| >PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.2e-08 Score=98.76 Aligned_cols=90 Identities=27% Similarity=0.403 Sum_probs=60.5
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCC--C
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG--N 374 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG--~ 374 (524)
+++|+++- +-... .-.+..++|+++|+.+.+. |+. ++.. .+ ..+.++|||++||||+ +
T Consensus 3 ~~kvaVl~-~pG~n-~d~e~~~Al~~aG~~v~~v----~~~--~~~~-----~~-------~~l~~~DgLvipGGfs~gD 62 (261)
T PRK01175 3 SIRVAVLR-MEGTN-CEDETVKAFRRLGVEPEYV----HIN--DLAA-----ER-------KSVSDYDCLVIPGGFSAGD 62 (261)
T ss_pred CCEEEEEe-CCCCC-CHHHHHHHHHHCCCcEEEE----eec--cccc-----cc-------cchhhCCEEEECCCCCccc
Confidence 35788884 53332 2246689999999886543 322 1110 00 2467899999999984 3
Q ss_pred C---c------h-hHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 375 R---G------V-QGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 375 r---g------~-eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
. + + ..+.++++.+.++++|+||||+|+|+|+-
T Consensus 63 ~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~ 104 (261)
T PRK01175 63 YIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVE 104 (261)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHH
Confidence 2 1 1 11237788999999999999999999984
|
|
| >cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ) | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.4e-08 Score=95.57 Aligned_cols=83 Identities=28% Similarity=0.304 Sum_probs=61.9
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC----
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---- 375 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r---- 375 (524)
|+++ .|.... ++.++.++++..|+++.+. +.. +.+.++|+|+||||+...
T Consensus 1 ~~~~-~y~~~g-N~~~l~~~~~~~G~~~~~~------~~~------------------~~~~~~d~lilpGg~~~~~~~~ 54 (194)
T cd01750 1 IAVI-RYPDIS-NFTDLDPLAREPGVDVRYV------EVP------------------EGLGDADLIILPGSKDTIQDLA 54 (194)
T ss_pred CEee-cCCCcc-CHHHHHHHHhcCCceEEEE------eCC------------------CCCCCCCEEEECCCcchHHHHH
Confidence 4556 687555 8999999999999876553 221 125678999999998432
Q ss_pred c--hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 376 G--VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 376 g--~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
. ..+..+.++.+.++++|+||||.|||+|+-.+
T Consensus 55 ~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 55 WLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred HHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 1 23567888888889999999999999998443
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ. |
| >cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-07 Score=90.34 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-----chhHHHHHHHH
Q 009814 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKY 386 (524)
Q Consensus 312 ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-----g~eg~i~air~ 386 (524)
++..-.++|+..|+++... ... +.+.++|||++|||+... ...+..+.++.
T Consensus 9 ~~~e~~~~l~~~g~~v~~v------~~~------------------~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~ 64 (183)
T cd01749 9 DFREHIRALERLGVEVIEV------RTP------------------EDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLRE 64 (183)
T ss_pred CcHHHHHHHHHCCCeEEEE------CCH------------------HHhccCCEEEECCchHHHHHHHHHhCCHHHHHHH
Confidence 4445558899888776543 210 347789999999997532 12345677888
Q ss_pred HHHcCCCEEEEhHhHHHHHHHhccc
Q 009814 387 AREHRIPYLGICLGMQVAVIEFARS 411 (524)
Q Consensus 387 are~~iP~LGICLGmQll~ie~gr~ 411 (524)
+.++++|+||||+|||+|+-+++..
T Consensus 65 ~~~~g~PvlGiC~G~qlL~~~~~~~ 89 (183)
T cd01749 65 FIRAGKPVFGTCAGLILLAKEVEDQ 89 (183)
T ss_pred HHHcCCeEEEECHHHHHHHHHhccc
Confidence 8899999999999999999888764
|
Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6. |
| >COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.4e-07 Score=89.44 Aligned_cols=84 Identities=27% Similarity=0.542 Sum_probs=61.4
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhcc-CCCEEEECCCCCC-
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGN- 374 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~-~~DGIllpGGfG~- 374 (524)
++|||++ .+-... ...-...|++.+|.++... |... ..+. ++|+|++||||..
T Consensus 2 ~~kvaVi-~fpGtN-~d~d~~~A~~~aG~~~~~V----~~~d-------------------~~~~~~~d~vv~pGGFSyG 56 (231)
T COG0047 2 RPKVAVL-RFPGTN-CDYDMAAAFERAGFEAEDV----WHSD-------------------LLLGRDFDGVVLPGGFSYG 56 (231)
T ss_pred CceEEEE-EcCCcC-chHHHHHHHHHcCCCceEE----Eeee-------------------cccCCCccEEEEcCCCCcc
Confidence 4689998 564333 5566778999999887654 6431 1234 6899999999854
Q ss_pred ---C-c----hhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 375 ---R-G----VQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 375 ---r-g----~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
| | .+-..+.++.+.+.++|+||||-|+|+|.
T Consensus 57 DyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~ 95 (231)
T COG0047 57 DYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILS 95 (231)
T ss_pred cccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHH
Confidence 2 2 24456667777778999999999999999
|
|
| >cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.3e-07 Score=88.26 Aligned_cols=74 Identities=23% Similarity=0.221 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC---c---hhHHHHHHH
Q 009814 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---G---VQGKILAAK 385 (524)
Q Consensus 312 ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r---g---~eg~i~air 385 (524)
-|..-.++|+.+|+++... ++.. . +.+.++|+|+||||+..- . ..++.++++
T Consensus 12 ~y~e~~~~l~~~G~~v~~~------s~~~--~--------------~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~ 69 (198)
T cd03130 12 YYPENLELLEAAGAELVPF------SPLK--D--------------EELPDADGLYLGGGYPELFAEELSANQSMRESIR 69 (198)
T ss_pred ccHHHHHHHHHCCCEEEEE------CCCC--C--------------CCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHH
Confidence 4666789999999765442 3210 0 234468999999986541 1 246788999
Q ss_pred HHHHcCCCEEEEhHhHHHHHHH
Q 009814 386 YAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 386 ~are~~iP~LGICLGmQll~ie 407 (524)
.+.++++|++|||.|||+|+-.
T Consensus 70 ~~~~~g~pilgICgG~qlL~~~ 91 (198)
T cd03130 70 AFAESGGPIYAECGGLMYLGES 91 (198)
T ss_pred HHHHcCCCEEEEcccHHHHHHH
Confidence 9889999999999999999944
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB. |
| >KOG1622 consensus GMP synthase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.9e-07 Score=96.00 Aligned_cols=118 Identities=20% Similarity=0.215 Sum_probs=72.9
Q ss_pred cCCCEEEECCCCCC------CchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeee
Q 009814 361 KGADGILVPGGFGN------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIF 434 (524)
Q Consensus 361 ~~~DGIllpGGfG~------rg~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l 434 (524)
.++-||++||||-+ |...-.+ .+-++|+||||.|||+|+-.+|+.|.+ ....|.++. -..
T Consensus 58 ~~~rgiIiSGGP~SVya~dAP~~dp~i------f~~~vpvLGICYGmQ~i~~~~Gg~V~~---~~~RE~G~~-----eI~ 123 (552)
T KOG1622|consen 58 YGPRGIIISGGPNSVYAEDAPSFDPAI------FELGVPVLGICYGMQLINKLNGGTVVK---GMVREDGED-----EIE 123 (552)
T ss_pred CCceEEEEeCCCCccccCcCCCCChhH------hccCCcceeehhHHHHHHHHhCCcccc---ccccCCCCc-----eEE
Confidence 57899999999976 2222211 234799999999999999999999964 333333221 111
Q ss_pred CCCCCcCCCCCcccccceeeEeccCCcccccccCCcc--eeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEE
Q 009814 435 MPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRT--FIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWT 512 (524)
Q Consensus 435 ~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~--~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE 512 (524)
++ +...+..+..+ .. .+--. |+ +.+.++ ..|+++.+++.+.- +-++.
T Consensus 124 v~---------------------~~~~lF~~~~~-~~~~~Vllt--Hg-----dsl~~v-~~g~kv~a~s~n~~-va~i~ 172 (552)
T KOG1622|consen 124 VD---------------------DSVDLFSGLHK-TEFMTVLLT--HG-----DSLSKV-PEGFKVVAFSGNKP-VAGIL 172 (552)
T ss_pred cC---------------------chhhhhhhhcc-cceeeeeec--cc-----cchhhc-cccceeEEeecCcc-eeeeh
Confidence 11 10000111110 11 12112 43 455555 45799999987664 88899
Q ss_pred ECCCcEEEEec
Q 009814 513 FNYKIAVLLNY 523 (524)
Q Consensus 513 ~~~hp~f~vqy 523 (524)
....+.+.+||
T Consensus 173 ~e~kkiyglqf 183 (552)
T KOG1622|consen 173 NELKKIYGLQF 183 (552)
T ss_pred hhhhhhhcCCC
Confidence 99999999998
|
|
| >PRK05368 homoserine O-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-05 Score=82.31 Aligned_cols=129 Identities=16% Similarity=0.088 Sum_probs=78.1
Q ss_pred cCCCEEEECCCCCC--C-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeee
Q 009814 361 KGADGILVPGGFGN--R-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVI 433 (524)
Q Consensus 361 ~~~DGIllpGGfG~--r-----g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~ 433 (524)
.++||+||.|.|-. . -++-..+.+++++++.+|+||||.|+|+++-++++-. +..- ...++
T Consensus 98 ~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~-k~~~-~~K~~---------- 165 (302)
T PRK05368 98 EKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIP-KYTL-PEKLS---------- 165 (302)
T ss_pred CCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCc-cCCC-CCcee----------
Confidence 47999999998855 2 2345678888999999999999999999999988841 1000 00011
Q ss_pred eCCCCCcCCCCCcccccceeeEecc-CCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEE
Q 009814 434 FMPEGSKTHMGGTMRLGSRRTYFQI-KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWT 512 (524)
Q Consensus 434 l~~e~~~~~~GgtmrLg~~~v~l~~-g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE 512 (524)
|.+...+.. ...++..+ .+...--|-|--+|+.+-+.. ..|+++-+.|..-. +.++.
T Consensus 166 ----------------Gv~~~~~~~~~~pL~~g~---~d~F~~phSr~~~V~~~~i~~--~~~l~vLA~S~~~g-v~~~~ 223 (302)
T PRK05368 166 ----------------GVFEHRVLDPHHPLLRGF---DDSFLVPHSRYTEVREEDIRA--ATGLEILAESEEAG-VYLFA 223 (302)
T ss_pred ----------------EEEEEEEcCCCChhhcCC---CCccccceeehhhccHHHhcc--CCCCEEEecCCCCC-eEEEE
Confidence 111111100 00111100 011111243434454443332 46899998887766 89999
Q ss_pred ECCCcEEEEec
Q 009814 513 FNYKIAVLLNY 523 (524)
Q Consensus 513 ~~~hp~f~vqy 523 (524)
.+++.++.||+
T Consensus 224 ~~~~r~~~vQg 234 (302)
T PRK05368 224 SKDKREVFVTG 234 (302)
T ss_pred eCCCCEEEEEC
Confidence 98889999996
|
|
| >PRK06278 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.5e-07 Score=97.33 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=52.0
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCC-ceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCC-Cc
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASV-DLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-RG 376 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~-~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~-rg 376 (524)
+|+++ +..|+.+++++.+. .+. +.|++. | +.+.++|+||+|||.-. .+
T Consensus 2 ~iGvl--------al~sv~~al~~lg~~~~~----vv~~~~-----------~-------~~l~~~D~lILPGG~~~~~~ 51 (476)
T PRK06278 2 EIGLL--------DIKGSLPCFENFGNLPTK----IIDENN-----------I-------KEIKDLDGLIIPGGSLVESG 51 (476)
T ss_pred EEEEE--------ehhhHHHHHHHhcCCCcE----EEEeCC-----------h-------HHhccCCEEEECCCchhhcc
Confidence 67877 55688889988886 333 334322 1 46789999999998532 12
Q ss_pred --hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH
Q 009814 377 --VQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 377 --~eg~i~air~are~~iP~LGICLGmQll~ie 407 (524)
.++..++++.+ ++|+||||.|||||+-.
T Consensus 52 ~l~~~l~~~i~~~---g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 52 SLTDELKKEILNF---DGYIIGICSGFQILSEK 81 (476)
T ss_pred hHHHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence 13444444433 89999999999999944
|
|
| >KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.5e-05 Score=77.34 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=44.7
Q ss_pred HhccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhcccc
Q 009814 358 KLLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412 (524)
Q Consensus 358 ~~l~~~DGIllpGGfG~r-----g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v 412 (524)
++|.++||++++|..-|. -+--.+..++.....++|++|||.|||+++.+.|+.|
T Consensus 55 ~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~V 114 (245)
T KOG3179|consen 55 EDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKV 114 (245)
T ss_pred hhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCcc
Confidence 468889999999965443 2345566777888889999999999999999998887
|
|
| >PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.3e-06 Score=82.76 Aligned_cols=88 Identities=26% Similarity=0.291 Sum_probs=54.4
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
++++++--.+ .. .-.....||+.+|+++... |+ +++-.. ...+.++|+|++||||+.-
T Consensus 2 pkV~Vl~~pG-tN-ce~e~~~A~~~aG~~~~~v----~~--~dl~~~------------~~~l~~~~~lvipGGFS~gD~ 61 (259)
T PF13507_consen 2 PKVAVLRFPG-TN-CERETAAAFENAGFEPEIV----HI--NDLLSG------------ESDLDDFDGLVIPGGFSYGDY 61 (259)
T ss_dssp -EEEEEE-TT-EE-EHHHHHHHHHCTT-EEEEE----EC--CHHHTT------------S--GCC-SEEEE-EE-GGGGT
T ss_pred CEEEEEECCC-CC-CHHHHHHHHHHcCCCceEE----EE--Eecccc------------cCchhhCcEEEECCccCcccc
Confidence 5777774334 22 4567789999999887763 22 121100 0357899999999998652
Q ss_pred ---c--h-------hHHHHHHHHHHHc-CCCEEEEhHhHHHHH
Q 009814 376 ---G--V-------QGKILAAKYAREH-RIPYLGICLGMQVAV 405 (524)
Q Consensus 376 ---g--~-------eg~i~air~are~-~iP~LGICLGmQll~ 405 (524)
| . ....++++...++ +.|+||||-|+|+|+
T Consensus 62 l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~ 104 (259)
T PF13507_consen 62 LRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILV 104 (259)
T ss_dssp TSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHC
T ss_pred chHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHH
Confidence 1 1 1235677777787 999999999999998
|
|
| >cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.6e-05 Score=62.65 Aligned_cols=76 Identities=28% Similarity=0.337 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc----hhHHHHHHHHH
Q 009814 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG----VQGKILAAKYA 387 (524)
Q Consensus 312 ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg----~eg~i~air~a 387 (524)
.+.+..++|+.+++.+.+. +........ .+...++|++++|||+..+. ...+++.++.+
T Consensus 13 ~~~~~~~~l~~~~~~~~~~------~~~~~~~~~-----------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~ 75 (115)
T cd01653 13 ELASPLDALREAGAEVDVV------SPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREA 75 (115)
T ss_pred hhHHHHHHHHHCCCeEEEE------cCCCCceec-----------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHH
Confidence 4567889999998555443 333221000 02356899999999988762 26788899999
Q ss_pred HHcCCCEEEEhHhHHHH
Q 009814 388 REHRIPYLGICLGMQVA 404 (524)
Q Consensus 388 re~~iP~LGICLGmQll 404 (524)
.+++.|++|+|.|+|++
T Consensus 76 ~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 76 AAAGKPILGICLGAQLL 92 (115)
T ss_pred HHcCCEEEEECchhHhH
Confidence 99999999999999999
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende |
| >PRK05297 phosphoribosylformylglycinamidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00035 Score=84.77 Aligned_cols=90 Identities=19% Similarity=0.229 Sum_probs=59.2
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
.+++++++--.+ .. .-.....||+.+|+++... |+. ++.... ..|.+++|+++||||..-
T Consensus 1034 ~~pkv~il~~pG-~N-~~~e~~~Af~~aG~~~~~v----~~~--dl~~~~------------~~l~~~~~l~~~GGFS~g 1093 (1290)
T PRK05297 1034 ARPKVAILREQG-VN-SHVEMAAAFDRAGFDAIDV----HMS--DLLAGR------------VTLEDFKGLVACGGFSYG 1093 (1290)
T ss_pred CCCeEEEEECCC-CC-CHHHHHHHHHHcCCCeEEE----Eee--cCcCCC------------CChhhCcEEEECCccCCc
Confidence 357888884333 32 5567789999999987432 322 222111 247889999999998552
Q ss_pred ---ch-----------hHHHHHHHHHH-HcCCCEEEEhHhHHHHH
Q 009814 376 ---GV-----------QGKILAAKYAR-EHRIPYLGICLGMQVAV 405 (524)
Q Consensus 376 ---g~-----------eg~i~air~ar-e~~iP~LGICLGmQll~ 405 (524)
+. ....++++... +.+.+.||||.|+|+|+
T Consensus 1094 D~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~ 1138 (1290)
T PRK05297 1094 DVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMS 1138 (1290)
T ss_pred ccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHH
Confidence 11 12344455533 56899999999999998
|
|
| >cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP) | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.3e-05 Score=71.85 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=51.5
Q ss_pred cCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-----hhHH
Q 009814 306 YTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-----VQGK 380 (524)
Q Consensus 306 Y~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg-----~eg~ 380 (524)
.+......+++.++|+... ++..+.++++... .|+ .++|.+++|||..... -.+
T Consensus 8 ~g~~~~~~~~~~~~L~~~~-------~v~~~~~~~I~~~-----------~~~--~~ad~lVlPGGa~~~~~~~L~~~g- 66 (114)
T cd03144 8 PGASPGSLKHLAELLRLYL-------AVSTVTADELAVG-----------PWE--SKTALLVVPGGADLPYCRALNGKG- 66 (114)
T ss_pred CCCCHHHHHHHHHHHhhcc-------ceeeecHHHHhcC-----------chh--hCCCEEEECCCChHHHHHHHHhhC-
Confidence 3334446677788887654 2223355444221 122 5899999999754431 134
Q ss_pred HHHHHHHHHcCCCEEEEhHhHHHH
Q 009814 381 ILAAKYAREHRIPYLGICLGMQVA 404 (524)
Q Consensus 381 i~air~are~~iP~LGICLGmQll 404 (524)
.++++...+++.|+||||+|-=++
T Consensus 67 ~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 67 NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred cHHHHHHHHCCCcEEEEecCccce
Confidence 788888778899999999998776
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved. |
| >COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.8e-05 Score=74.63 Aligned_cols=82 Identities=26% Similarity=0.456 Sum_probs=60.9
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcC-CceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag-~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r- 375 (524)
++|++++ ++.+...-.++|+.++ .++. |+. .| ++|..+||+++|||-...
T Consensus 1 m~IGVLa----lQG~v~EH~~~l~~~~~~e~~------~Vk-----------~~-------~dL~~~d~LIiPGGESTTi 52 (194)
T COG0311 1 MKIGVLA----LQGAVEEHLEALEKAGGAEVV------EVK-----------RP-------EDLEGVDGLIIPGGESTTI 52 (194)
T ss_pred CeEEEEE----ecccHHHHHHHHHhhcCCceE------EEc-----------CH-------HHhccCcEEEecCccHHHH
Confidence 3677776 3346666678888886 3332 221 12 578899999999997763
Q ss_pred ----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH
Q 009814 376 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 376 ----g~eg~i~air~are~~iP~LGICLGmQll~ie 407 (524)
...|+.+.++...++++|+||.|-||-+|+-+
T Consensus 53 ~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLake 88 (194)
T COG0311 53 GRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKE 88 (194)
T ss_pred HHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhh
Confidence 23588899999999999999999999999833
|
|
| >TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0003 Score=84.41 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=62.2
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEee---CCCccccccCCChhhhhHHHHhccCCCEEEECCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIP---ACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 372 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~---s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGf 372 (524)
.+++++|+--.+ .. .-.....||+.+|+++... |+. +.+++.. . .+....|.++|+|++||||
T Consensus 976 ~kpkvaIl~~pG-tN-ce~d~a~Af~~aG~~~~~v----~~~dl~~~~i~~s-~-------~~~~~~l~~~~~l~~pGGF 1041 (1239)
T TIGR01857 976 EKPRVVIPVFPG-TN-SEYDSAKAFEKEGAEVNLV----IFRNLNEEALVES-V-------ETMVDEIDKSQILMLPGGF 1041 (1239)
T ss_pred CCCeEEEEECCC-CC-CHHHHHHHHHHcCCceEEE----EEecCcccccccc-h-------hhhhcccccCcEEEEcCcc
Confidence 357899884333 22 4566788999999885442 332 1122110 0 0001247899999999999
Q ss_pred CC---C-ch----------hHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 373 GN---R-GV----------QGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 373 G~---r-g~----------eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.. + +- ....++++...+.+.|+||||-|+|+|+
T Consensus 1042 SyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~ 1088 (1239)
T TIGR01857 1042 SAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALV 1088 (1239)
T ss_pred CcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHH
Confidence 65 2 21 2345666666778999999999999998
|
This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP. |
| >cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.9e-05 Score=74.59 Aligned_cols=92 Identities=22% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCeEEEEEeccCCCcch-HHHHHHHHHHc-CCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCC
Q 009814 296 EPVRIAMVGKYTGLSDA-YLSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~da-y~SI~~aL~~a-g~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG 373 (524)
...+|+++.--....+. ..++.++++.. |+.+..... .+.++ ..+.+.++|+|++|||-=
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~---~~~~~---------------~~~~l~~ad~I~l~GG~~ 91 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHL---FDTED---------------PLDALLEADVIYVGGGNT 91 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEec---cCccc---------------HHHHHhcCCEEEECCchH
Confidence 45789999522222234 35678899999 887664311 01000 125688999999999621
Q ss_pred CCc---h--hHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 374 NRG---V--QGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 374 ~rg---~--eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.+. + .+..++++.+.+++.|++|||.|||+|.
T Consensus 92 ~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~ 128 (212)
T cd03146 92 FNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWF 128 (212)
T ss_pred HHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhC
Confidence 111 1 3567778888888999999999999998
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption. |
| >PLN03206 phosphoribosylformylglycinamidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00098 Score=80.69 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=60.2
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCC--C
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF--G 373 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGf--G 373 (524)
.+++++++--.+ .. .-.....||+.+|+++.. .|+. ++.... ..|.+++||++|||| |
T Consensus 1036 ~~pkVaVl~~pG-tN-~~~e~~~Af~~aGf~~~~----V~~~--dl~~~~------------~~L~~~~glv~pGGFSyG 1095 (1307)
T PLN03206 1036 SKPKVAIIREEG-SN-GDREMAAAFYAAGFEPWD----VTMS--DLLNGR------------ISLDDFRGIVFVGGFSYA 1095 (1307)
T ss_pred CCCeEEEEECCC-CC-CHHHHHHHHHHcCCceEE----EEee--eccccc------------ccccceeEEEEcCcCCCc
Confidence 467899984333 32 456778999999988743 2332 222111 247889999999999 5
Q ss_pred CC-c-h----------hHHHHHHHHHH-HcCCCEEEEhHhHHHHH
Q 009814 374 NR-G-V----------QGKILAAKYAR-EHRIPYLGICLGMQVAV 405 (524)
Q Consensus 374 ~r-g-~----------eg~i~air~ar-e~~iP~LGICLGmQll~ 405 (524)
|- + - ....++++... +.+.++||||.|+|+|+
T Consensus 1096 D~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~ 1140 (1307)
T PLN03206 1096 DVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMA 1140 (1307)
T ss_pred cccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHH
Confidence 53 1 1 22344555555 45899999999999998
|
|
| >PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea [] | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.5e-05 Score=72.26 Aligned_cols=50 Identities=32% Similarity=0.375 Sum_probs=42.4
Q ss_pred hccCCCEEEECCCCCCC------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 359 LLKGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~r------g~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
.+.++|+|+||||+-.- ...++.++|+.+.+++.|++|||-|||+|.-.+
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 46789999999998753 124788999999999999999999999999553
|
Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process |
| >COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.006 Score=65.85 Aligned_cols=85 Identities=24% Similarity=0.239 Sum_probs=62.7
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhcc-CCCEEEECCCCCCC-
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNR- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~-~~DGIllpGGfG~r- 375 (524)
.+||+.-|- .+.=-|..-++.|+.+|+++.-. ++ +++ +.+. ++|+|.||||+..-
T Consensus 246 ~rIAVA~D~-AF~FyY~~nl~~Lr~~GAelv~F------SP--L~D--------------~~lP~~~D~vYlgGGYPElf 302 (451)
T COG1797 246 VRIAVARDA-AFNFYYPENLELLREAGAELVFF------SP--LAD--------------EELPPDVDAVYLGGGYPELF 302 (451)
T ss_pred ceEEEEecc-hhccccHHHHHHHHHCCCEEEEe------CC--cCC--------------CCCCCCCCEEEeCCCChHHH
Confidence 689997322 23335677789999999887644 22 211 2344 69999999998763
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 376 -----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.-+.+.++|+.+.+.++|++|=|-|+-.|.
T Consensus 303 A~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~ 337 (451)
T COG1797 303 AEELSANESMRRAIKAFAAAGKPIYAECGGLMYLG 337 (451)
T ss_pred HHHHhhCHHHHHHHHHHHHcCCceEEecccceeeh
Confidence 235688999999999999999999998877
|
|
| >TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0021 Score=78.25 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=59.2
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
.+++++++--.+ .. .-.....||+.+|+++... |+. ++.... ..|.+++|+++||||..-
T Consensus 1054 ~~p~vail~~pG-~N-~~~e~~~Af~~aGf~~~~v----~~~--dl~~~~------------~~l~~~~~lv~~GGFSyg 1113 (1310)
T TIGR01735 1054 VRPKVAILREQG-VN-GDREMAAAFDRAGFEAWDV----HMS--DLLAGR------------VHLDEFRGLAACGGFSYG 1113 (1310)
T ss_pred CCceEEEEECCC-CC-CHHHHHHHHHHhCCCcEEE----EEe--ccccCC------------cchhheeEEEEcCCCCCc
Confidence 357899984333 32 4567788999999885443 332 221111 136788999999998542
Q ss_pred ---c----h-------hHHHHHHHHHH-HcCCCEEEEhHhHHHHH
Q 009814 376 ---G----V-------QGKILAAKYAR-EHRIPYLGICLGMQVAV 405 (524)
Q Consensus 376 ---g----~-------eg~i~air~ar-e~~iP~LGICLGmQll~ 405 (524)
+ + ....++++... +.+.+.||||.|+|+|+
T Consensus 1114 D~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~ 1158 (1310)
T TIGR01735 1114 DVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLS 1158 (1310)
T ss_pred cchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHH
Confidence 1 1 12344555555 67899999999999999
|
This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit. |
| >PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ] | Back alignment and domain information |
|---|
Probab=97.61 E-value=9.5e-05 Score=71.40 Aligned_cols=73 Identities=22% Similarity=0.408 Sum_probs=51.4
Q ss_pred CcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-----chhHHHHH
Q 009814 309 LSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILA 383 (524)
Q Consensus 309 ~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-----g~eg~i~a 383 (524)
++.++..-.+.|+.+|.+.... ..| +.|.++||+++|||-..- ...|..+.
T Consensus 4 LQG~~~EH~~~l~~lg~~~~~V-----------------r~~-------~dL~~~dgLIiPGGESTti~~ll~~~gL~~~ 59 (188)
T PF01174_consen 4 LQGAFREHIRMLERLGAEVVEV-----------------RTP-------EDLEGLDGLIIPGGESTTIGKLLRRYGLFEP 59 (188)
T ss_dssp SSSSHHHHHHHHHHTTSEEEEE------------------SG-------GGGTT-SEEEE-SS-HHHHHHHHHHTTHHHH
T ss_pred cccChHHHHHHHHHcCCCeEEe-----------------CCH-------HHHccCCEEEECCCcHHHHHHHHHHcCCHHH
Confidence 3446666678888888776322 111 567889999999996552 23578889
Q ss_pred HHHHHHcC-CCEEEEhHhHHHHH
Q 009814 384 AKYAREHR-IPYLGICLGMQVAV 405 (524)
Q Consensus 384 ir~are~~-iP~LGICLGmQll~ 405 (524)
++....++ +|+||.|-||-+|+
T Consensus 60 l~~~~~~g~~Pv~GTCAGlIlLa 82 (188)
T PF01174_consen 60 LREFIRSGSKPVWGTCAGLILLA 82 (188)
T ss_dssp HHHHHHTT--EEEEETHHHHHHE
T ss_pred HHHHHHcCCCceeehhHHHHHhh
Confidence 99888887 99999999999988
|
The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A. |
| >cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00024 Score=55.67 Aligned_cols=75 Identities=28% Similarity=0.360 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-h---hHHHHHHHHHH
Q 009814 313 YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-V---QGKILAAKYAR 388 (524)
Q Consensus 313 y~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg-~---eg~i~air~ar 388 (524)
+.+..++++..++.+.+. ......... .....++|++++|||+..+. . ...++.++...
T Consensus 14 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~-----------~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~ 76 (92)
T cd03128 14 LASPLDALREAGAEVDVV------SPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAA 76 (92)
T ss_pred eecHHHHHHhCCCEEEEE------eCCCCcccc-----------cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHH
Confidence 356678888888655543 222111000 02356899999999988762 2 56788888888
Q ss_pred HcCCCEEEEhHhHHHH
Q 009814 389 EHRIPYLGICLGMQVA 404 (524)
Q Consensus 389 e~~iP~LGICLGmQll 404 (524)
+++.|++|+|.|+|++
T Consensus 77 ~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 77 AAGKPVLGICLGAQLL 92 (92)
T ss_pred HcCCEEEEEecccccC
Confidence 8899999999999874
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin |
| >PHA03366 FGAM-synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0058 Score=74.47 Aligned_cols=91 Identities=21% Similarity=0.165 Sum_probs=61.2
Q ss_pred CCCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCC
Q 009814 294 LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (524)
Q Consensus 294 ~~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG 373 (524)
+..+++|+|+--.+ .. .-.....||..+|+++... ++ .++... ..|.+++||++||||+
T Consensus 1025 ~~~~prVaIl~~pG-~N-~~~e~~~Af~~aGf~~~~v----~~--~dL~~~-------------~~l~~f~glv~~GGFS 1083 (1304)
T PHA03366 1025 PDKRHRVAVLLLPG-CP-GPHALLAAFTNAGFDPYPV----SI--EELKDG-------------TFLDEFSGLVIGGSSG 1083 (1304)
T ss_pred CCCCCeEEEEECCC-CC-CHHHHHHHHHHcCCceEEE----Ee--ecCCCC-------------CccccceEEEEcCCCC
Confidence 34568999984333 32 5567789999999985543 22 232211 1278889999999997
Q ss_pred CC----c---h-------hHHHHHHHHHH-HcCCCEEEEhH-hHHHHH
Q 009814 374 NR----G---V-------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 405 (524)
Q Consensus 374 ~r----g---~-------eg~i~air~ar-e~~iP~LGICL-GmQll~ 405 (524)
.- + + +...++++... +.+.+.||||- |+|+|+
T Consensus 1084 ~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~ 1131 (1304)
T PHA03366 1084 AEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILF 1131 (1304)
T ss_pred CcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHH
Confidence 62 1 1 23345555555 45899999997 999998
|
|
| >cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS) | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0018 Score=62.24 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=43.7
Q ss_pred ccCCCEEEECCCCCCC-------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhcccc
Q 009814 360 LKGADGILVPGGFGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412 (524)
Q Consensus 360 l~~~DGIllpGGfG~r-------g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v 412 (524)
..++||+||.|.|=.- -++...+.+.+++++..|.||||-|+|.+.-.+++-.
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~ 119 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIK 119 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcc
Confidence 4679999999987642 2346778889999999999999999999998877753
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti |
| >PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0049 Score=61.12 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=41.3
Q ss_pred ccCCCEEEECCCCCC--------------CchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 360 LKGADGILVPGGFGN--------------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 360 l~~~DGIllpGGfG~--------------rg~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
..++|+|++|||+|. |..+...+.++.+.++++|+..||-|-|+|+-++
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 457999999999874 1245688899999999999999999999998665
|
|
| >cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1 | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0054 Score=60.73 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=43.9
Q ss_pred ccCCCEEEECCCCCCC--------------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh--ccccccc
Q 009814 360 LKGADGILVPGGFGNR--------------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF--ARSVLNL 415 (524)
Q Consensus 360 l~~~DGIllpGGfG~r--------------g~eg~i~air~are~~iP~LGICLGmQll~ie~--gr~v~gl 415 (524)
+.++|+|++|||++.. .-+..++.++.+.++++|+.+||-|-++|+-+. ||++...
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~kGr~vT~~ 151 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILGEGVEVTIG 151 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhccCCeEEcc
Confidence 4579999999998741 134678889999999999999999999988655 4555443
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis. |
| >PRK05282 (alpha)-aspartyl dipeptidase; Validated | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.011 Score=59.31 Aligned_cols=104 Identities=20% Similarity=0.280 Sum_probs=70.4
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEEeccCCCc---chHH-HHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhH
Q 009814 280 LLKEWTSRAEICDGLHEPVRIAMVGKYTGLS---DAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKA 355 (524)
Q Consensus 280 ~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~---day~-SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~ 355 (524)
.|..|..+...+-. +..+|+++ .+-... +.|. +..++++..|+.+... .. +++
T Consensus 16 ~l~~~~~~~~~~~~--~~~~v~fI-PtAs~~~~~~~y~~~~~~af~~lG~~v~~l----~~-~~d--------------- 72 (233)
T PRK05282 16 YLEHALPLIAELLA--GRRKAVFI-PYAGVTQSWDDYTAKVAEALAPLGIEVTGI----HR-VAD--------------- 72 (233)
T ss_pred hHHHHHHHHHHHHc--CCCeEEEE-CCCCCCCCHHHHHHHHHHHHHHCCCEEEEe----cc-chh---------------
Confidence 46677777776643 34689999 465322 3343 4678888888874432 11 111
Q ss_pred HHHhccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 356 AWKLLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 356 ~~~~l~~~DGIllpGGfG~r-----g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
..+.+.++|+|+++||--.+ ...+..++++.+.++++|+.|.|-|.-+++-
T Consensus 73 ~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~ 128 (233)
T PRK05282 73 PVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGP 128 (233)
T ss_pred hHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhc
Confidence 12468899999999985432 1246778899889999999999999988773
|
|
| >cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0056 Score=58.03 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=37.8
Q ss_pred CCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 362 GADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 362 ~~DGIllpGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
.+|+|+||||++.. ........++.+.++++|+.|||.|.|+|+-
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~ 123 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAA 123 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHH
Confidence 57999999998642 2345778899999999999999999999884
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.016 Score=70.31 Aligned_cols=89 Identities=22% Similarity=0.208 Sum_probs=58.1
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
.+++|+|+--.+ .. .-.....||..+|+++... ++ .++... +.+.+++|++++|||+.-
T Consensus 928 ~~p~VaIl~~pG-~N-~~~e~~~Af~~aGf~~~~v----~~--~dl~~~-------------~~l~~f~glv~~Ggfsy~ 986 (1202)
T TIGR01739 928 PRHQVAVLLLPG-QS-VPHGLLAALTNAGFDPRIV----SI--TELKKT-------------DFLDTFSGLIIGGASGTL 986 (1202)
T ss_pred CCCeEEEEeCCC-CC-CHHHHHHHHHHcCCceEEE----Ee--ccCCCC-------------CchhheEEEEEcCcCCCC
Confidence 457888884333 32 5567789999999885543 22 222110 235678999999998752
Q ss_pred ----ch----------hHHHHHHHHHH-HcCCCEEEEhH-hHHHHH
Q 009814 376 ----GV----------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 405 (524)
Q Consensus 376 ----g~----------eg~i~air~ar-e~~iP~LGICL-GmQll~ 405 (524)
+- ....++++... +.+.+.||||- |+|+|+
T Consensus 987 D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~ 1032 (1202)
T TIGR01739 987 DSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLL 1032 (1202)
T ss_pred ccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHH
Confidence 11 12334455544 45899999996 999998
|
This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model. |
| >KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.017 Score=55.01 Aligned_cols=86 Identities=20% Similarity=0.252 Sum_probs=57.5
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCce--eEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDL--RKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~--~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
..|++.. ++.++..-..-++...++. .+++++..+.. | +++.++||+++|||-...
T Consensus 12 ~VIGVLA----LQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT-----------~-------~D~aq~DaLIIPGGEST~ 69 (226)
T KOG3210|consen 12 VVIGVLA----LQGAFIEHVNHVEKCIVENRYEIKLSVMTVKT-----------K-------NDLAQCDALIIPGGESTA 69 (226)
T ss_pred eEEeeee----hhhHHHHHHHHHHHhhccCcceEEEEEEeecC-----------H-------HHHhhCCEEEecCCchhH
Confidence 4566663 5567776666666555554 55555544321 1 578899999999997653
Q ss_pred -c----hhHHHHHHHHHHHcC-CCEEEEhHhHHHHH
Q 009814 376 -G----VQGKILAAKYAREHR-IPYLGICLGMQVAV 405 (524)
Q Consensus 376 -g----~eg~i~air~are~~-iP~LGICLGmQll~ 405 (524)
+ ..|....+.....+. +|+.|.|-||-++.
T Consensus 70 mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS 105 (226)
T KOG3210|consen 70 MSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLS 105 (226)
T ss_pred HHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhh
Confidence 2 235555555555565 89999999999988
|
|
| >TIGR01382 PfpI intracellular protease, PfpI family | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0061 Score=56.64 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=37.7
Q ss_pred CCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 362 GADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 362 ~~DGIllpGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
++|+|+||||++.. ......+.++.+.++++|+.|||-|.++|+
T Consensus 60 ~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La 106 (166)
T TIGR01382 60 EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLI 106 (166)
T ss_pred HCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 58999999997742 235678899999999999999999999988
|
The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs. |
| >KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.014 Score=58.65 Aligned_cols=147 Identities=15% Similarity=0.226 Sum_probs=75.0
Q ss_pred HhccCCCEEEECCCCCCCchhHHHHH--HHHHHHc-----CCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCC
Q 009814 358 KLLKGADGILVPGGFGNRGVQGKILA--AKYAREH-----RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNP 430 (524)
Q Consensus 358 ~~l~~~DGIllpGGfG~rg~eg~i~a--ir~are~-----~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~p 430 (524)
+.++...||+++||--.++.-.++.- -..++++ --|+.|||||+.+|.+-...+-+=++--++.. ...+
T Consensus 107 qklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~lsmiISqnrdile~~d~vd----~Ass 182 (340)
T KOG1559|consen 107 QKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFELLSMIISQNRDILERFDAVD----VASS 182 (340)
T ss_pred HHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHhcChhHHHhhcccc----cccc
Confidence 45678999999999665664332221 1233443 37999999999999876553321121111110 0000
Q ss_pred eeeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhH---HhhhcCCeEEEEEeCCCC-
Q 009814 431 CVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMI---ARLENAGLSFTGKDETSQ- 506 (524)
Q Consensus 431 Vi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v---~~l~~~Gl~~sg~~~dg~- 506 (524)
..- ....+.-|||-. .-|.. ++.++- .+-.+ .++|+|.+.|+.. ++|.+ =+.+.-++.|++
T Consensus 183 LqF----~~nvn~~~t~FQ-rFPpE------LLkkL~--~dcLv-mq~Hk~gisp~nF~~N~~Ls~-FFnilTT~~D~~~ 247 (340)
T KOG1559|consen 183 LQF----VGNVNIHGTMFQ-RFPPE------LLKKLS--TDCLV-MQNHKFGISPKNFQGNPALSS-FFNILTTCTDGNS 247 (340)
T ss_pred eee----ecccceeehhHh-hCCHH------HHHHhc--cchhe-eeccccccchhhccCCHHHHH-HHhheeeecCCCc
Confidence 000 011222344321 11111 222221 22222 4889999887422 22211 144555555553
Q ss_pred --eEEEEEECCCcEEEEec
Q 009814 507 --RMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 507 --~VE~iE~~~hp~f~vqy 523 (524)
.|..+|-+.+|...+|.
T Consensus 248 k~fvSTv~~~kYPvtgfQW 266 (340)
T KOG1559|consen 248 KTFVSTVESKKYPVTGFQW 266 (340)
T ss_pred eEEEEeecceeccceeeee
Confidence 46667788899999985
|
|
| >cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.018 Score=53.40 Aligned_cols=45 Identities=22% Similarity=0.356 Sum_probs=37.8
Q ss_pred cCCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..+|+++||||++.. .....+..++.+.++++|+.|||-|-++|+
T Consensus 61 ~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La 108 (165)
T cd03134 61 DDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLI 108 (165)
T ss_pred HHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHH
Confidence 368999999998543 235678889999999999999999999887
|
A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. |
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.077 Score=49.60 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=79.4
Q ss_pred eCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCC
Q 009814 7 TGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDN 86 (524)
Q Consensus 7 tggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~~~~~~ 86 (524)
..+--.|.||=.+|+.|+..|...|+||-.+-.||--.. .. +++
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~----~~------------------------~~~-------- 47 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPS----IP------------------------KMW-------- 47 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCC----ch------------------------HHH--------
Confidence 334457899999999999999999999999999885421 10 000
Q ss_pred cccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHHHHHHh
Q 009814 87 NITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQF 166 (524)
Q Consensus 87 n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ea~rq~ 166 (524)
+ -|...+-+++++.... ...+|+||+-.++.++|. .+.+++
T Consensus 48 ----------------~----------~~~~~~~l~~~~~~~~-------~~~yD~VIiD~pp~~~~~----~~~~~~-- 88 (169)
T cd02037 48 ----------------R----------GPMKMGAIKQFLTDVD-------WGELDYLVIDMPPGTGDE----HLTLAQ-- 88 (169)
T ss_pred ----------------h----------CcchHHHHHHHHHHhh-------cCCCCEEEEeCCCCCcHH----HHHHHh--
Confidence 0 0122344555555543 357999999999988761 122221
Q ss_pred hhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCC
Q 009814 167 SYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTV 220 (524)
Q Consensus 167 ~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~ 220 (524)
. ...+..++|. ..+..--+-+...++.+++.++...++|+--..
T Consensus 89 ---~-----~~ad~viiV~--~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~ 132 (169)
T cd02037 89 ---S-----LPIDGAVIVT--TPQEVALDDVRKAIDMFKKVNIPILGVVENMSY 132 (169)
T ss_pred ---c-----cCCCeEEEEE--CCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 0 0112233332 123444445566677888899988888775443
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >PRK00090 bioD dithiobiotin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.029 Score=54.79 Aligned_cols=167 Identities=18% Similarity=0.203 Sum_probs=92.4
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCC
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLT 83 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~~~ 83 (524)
||||| .=++.||=.+++.|.+.|+.+|++|...| |.++|--... .|=|.-...++.+....
T Consensus 2 i~I~~-t~t~~GKT~vs~~L~~~l~~~g~~v~~~K-------------Pv~~g~~~~~-----~~~d~~~~~~~~~~~~~ 62 (222)
T PRK00090 2 LFVTG-TDTDVGKTVVTAALAQALREAGYSVAGYK-------------PVQSGCEETD-----RNGDALALQRLSGLPLD 62 (222)
T ss_pred EEEEe-CCCCcCHHHHHHHHHHHHHHcCCceEEEe-------------eEecCCCCCC-----CcHHHHHHHHHcCCCCC
Confidence 56765 46999999999999999999999998865 6666631110 12233334454443322
Q ss_pred CCCcccchHhhHHH----HhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccccc--Ccc
Q 009814 84 RDNNITTGKIYQSV----IDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDI--ESM 157 (524)
Q Consensus 84 ~~~n~t~g~iy~~v----i~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdi--es~ 157 (524)
. ...++-.|... +..++.| . +--.+.|++.+.+++ .++|+||||-.|.+.+- .++
T Consensus 63 ~--~~~~~~~~~~~~sp~~a~~~~~----~-----~~~~~~i~~~~~~l~--------~~~D~viIEg~gg~~~~~~~~~ 123 (222)
T PRK00090 63 Y--EDVNPYRFEEPLSPHLAAALEG----V-----AIDLEKISAALRRLA--------QQYDLVLVEGAGGLLVPLTEDL 123 (222)
T ss_pred h--hhcCceeeCCCCCHHHHHHHhC----C-----CCCHHHHHHHHHHHH--------hhCCEEEEECCCceeccCCCCC
Confidence 1 11122222111 1111222 1 123467888887764 36899999988766432 111
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCC
Q 009814 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVA 221 (524)
Q Consensus 158 pf~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~ 221 (524)
-..+-+++ .+ --++.|.- +. .+. ..-+.-+++.++..|+...++|+....+
T Consensus 124 ~~adl~~~----l~-~pvilV~~---~~---~~~--i~~~~~~i~~l~~~~~~i~gvIlN~~~~ 174 (222)
T PRK00090 124 TLADLAKQ----LQ-LPVILVVG---VK---LGC--INHTLLTLEAIRARGLPLAGWVANGIPP 174 (222)
T ss_pred cHHHHHHH----hC-CCEEEEEC---CC---CcH--HHHHHHHHHHHHHCCCCeEEEEEccCCC
Confidence 22223333 32 12333331 11 122 2246677888888899998888765433
|
|
| >PRK12374 putative dithiobiotin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.06 Score=53.37 Aligned_cols=169 Identities=17% Similarity=0.127 Sum_probs=99.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||-|||||- =.+.||=.+++.|.+.|+.+|++|..+| |.++|-.. ++ ++..|-|.-.+.+..+.
T Consensus 2 ~~~ifIt~t-~t~vGKT~vt~~L~~~l~~~g~~v~~~K-------------Pi~~g~~~-~~-~~~~~~D~~~l~~~~~~ 65 (231)
T PRK12374 2 LKRFFITGT-DTSVGKTVVSRALLQALASQGKTVAGYK-------------PVAKGSKE-TP-EGLRNKDALVLQSVSSI 65 (231)
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHHHHCCCeEEEEC-------------ccccCCcc-CC-CCCchHHHHHHHHhcCC
Confidence 467899874 3889999999999999999999998877 88888532 22 23345444445555554
Q ss_pred CCCCCC-c---ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc--c
Q 009814 81 KLTRDN-N---ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD--I 154 (524)
Q Consensus 81 ~~~~~~-n---~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgd--i 154 (524)
..+-.. | ++.. ...++.+ +.+ -.++|.+++++++ .+.|++|||=-|-+.. -
T Consensus 66 ~~~~~~~~p~~~~~~------~a~~~~~-------~~i--~~~~i~~~~~~l~--------~~~D~VlVEGaGgl~~p~~ 122 (231)
T PRK12374 66 ELPYEAVNPIALSEE------ESSVAHS-------CPI--NYTLMSNGLANLS--------EKVDHVVVEGTGGWRSLMN 122 (231)
T ss_pred CCCHHhccCeecCCC------cChHHcC-------CcC--CHHHHHHHHHHHH--------hhCCEEEEECCCCcceecc
Confidence 432111 1 1111 1111222 111 2367888887764 3789999998772221 0
Q ss_pred CcchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCC
Q 009814 155 ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVA 221 (524)
Q Consensus 155 es~pf~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~ 221 (524)
+...+.+.++++ +-. ++.|- -...|. .--|.-+++.+++.|+..-++|+-...+
T Consensus 123 ~~~~~~d~~~~~----~~p-vilV~------~~~lg~--in~~lLt~~~l~~~~~~~~gvV~N~~~~ 176 (231)
T PRK12374 123 DLRPLSEWVVQE----QLP-VLMVV------GIQEGC--INHALLTAQAIANDGLPLIGWVANRINP 176 (231)
T ss_pred CcccHHHHHHHh----CCC-EEEEE------CCCcCh--HHHHHHHHHHHHhCCCcEEEEEEeCccC
Confidence 112344444443 211 22221 011233 2345567788889999999999976543
|
|
| >COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.023 Score=62.27 Aligned_cols=54 Identities=31% Similarity=0.441 Sum_probs=41.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEV 67 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~ 67 (524)
||.|.| -|..|..||=..+|-+=++|..+|++|..-|- =.||= -=|||.||+|.
T Consensus 1 ~~~iMv-~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~--------QNMsL----Ns~it~~G~EI 54 (486)
T COG1492 1 MKAIMV-QGTTSDAGKSFLVAGLCRILARRGYRVAPFKS--------QNMSL----NSAITPGGGEI 54 (486)
T ss_pred CCccEE-EeccCCcchhhhhhhhhHHHHhcCCccCCCch--------hhccc----ccEECCCCcEE
Confidence 344444 36889999999999999999999999997773 23333 34889999885
|
|
| >cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.087 Score=47.81 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=59.1
Q ss_pred EEEEEeccCCCcc-hHHHHHHHHHHcCCceeEEee-eEEeeCCCccccccCCChhhhhHHHHhc--cCCCEEEECCCCCC
Q 009814 299 RIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLV-IDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGN 374 (524)
Q Consensus 299 ~IaiVGkY~~~~d-ay~SI~~aL~~ag~~~~v~v~-i~~i~s~~le~~~~~~~p~~y~~~~~~l--~~~DGIllpGGfG~ 374 (524)
+|+++- |..... .+....+.|+.+++++.+.-. -..+.++. ...-.+. ...+.. .++|.|+||||.+.
T Consensus 3 ~v~ill-~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~----g~~i~~~---~~l~~~~~~~~D~liVpGg~~~ 74 (142)
T cd03132 3 KVGILV-ADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSD----GKTLEVD---QTYAGAPSVLFDAVVVPGGAEA 74 (142)
T ss_pred EEEEEE-cCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCC----CcEEecc---eeecCCChhhcCEEEECCCccC
Confidence 456653 443332 456778999999876654310 01111111 0000000 000111 25899999999775
Q ss_pred C----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 375 R----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 375 r----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
. .....++.++.+.++++|+.+||-|-.+|+
T Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La 109 (142)
T cd03132 75 AFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLE 109 (142)
T ss_pred HHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHH
Confidence 2 335678889998999999999999999888
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C |
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.17 Score=51.08 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=34.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+.|+|+|- +|.||-..+..+...|+..|.+|.++.+||-
T Consensus 3 ~~i~v~G~--~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGT--AGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECC--CCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 55666665 9999999999999999999999999999984
|
|
| >cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.045 Score=54.76 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=40.1
Q ss_pred ccCCCEEEECCCCCC----CchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH
Q 009814 360 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 360 l~~~DGIllpGGfG~----rg~eg~i~air~are~~iP~LGICLGmQll~ie 407 (524)
..++|+|++|||.|. +.-+...+.++.+.++++|+..||-|-++|.-+
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 457899999999874 244567889999999999999999999988743
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer. |
| >COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.045 Score=52.06 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=39.5
Q ss_pred cCCCEEEECCC-CCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGG-FGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGG-fG~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.++|++++||| .|.. ..+..+..++++.++++|+..||-|-|+|.
T Consensus 65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~ 113 (188)
T COG0693 65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLA 113 (188)
T ss_pred hHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHh
Confidence 48999999999 7764 226788999999999999999999999988
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.1 Score=42.55 Aligned_cols=33 Identities=36% Similarity=0.513 Sum_probs=30.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|+++|.- |.||-.+++.+...|++.|++|..++
T Consensus 2 ~~~~g~~--G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG--GVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCC--CCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 6677766 99999999999999999999999888
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.033 Score=51.12 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=36.4
Q ss_pred ccCCCEEEECCCCCC----Cch-hHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGN----RGV-QGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~----rg~-eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..++|+|++|||.+. +.. +-....++++.++++|+.+||-|-.+|+
T Consensus 35 ~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~ 85 (147)
T PF01965_consen 35 PSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLA 85 (147)
T ss_dssp GGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHH
T ss_pred hhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhh
Confidence 346899999999984 223 6678899999999999999999997776
|
Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C .... |
| >cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.082 Score=49.66 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=38.7
Q ss_pred cCCCEEEECCCCCCC--chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 361 KGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 361 ~~~DGIllpGGfG~r--g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
.++|.++||||++.. ..+...+.++.+.+++.|+.+||-|-++|+-
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 106 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALAR 106 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHH
Confidence 468999999997532 3456788999999999999999999999883
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >PRK04155 chaperone protein HchA; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.07 Score=55.19 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=38.9
Q ss_pred ccCCCEEEECCCCCC----CchhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~----rg~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..++|+|++|||.|. |.-+...+.++++.++++|+..||-|-+++.
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll 194 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALL 194 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 357899999999875 3446678899999999999999999998655
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.32 Score=51.37 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=48.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC-------CCCCCCc-cccceEEEccCCccc
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT-------DAGTMSP-FEHGEVFVLDDGGEV 67 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~-------d~gtmsp-~~hgevfv~~dg~e~ 67 (524)
.|-|||- +|-||=.....+...|+.+|++|.++.+||.-.+ |.-.|.. .+|..||+-..++..
T Consensus 58 ~igi~G~--~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~ 128 (332)
T PRK09435 58 RIGITGV--PGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSG 128 (332)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcc
Confidence 5677775 8999999999999999999999999999998665 4444543 355556666555433
|
|
| >cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.12 Score=48.99 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=40.1
Q ss_pred hccCCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 359 LLKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
...++|.+++|||.+.. ..+..++.++.+..++.|+.+||-|-++|+-
T Consensus 61 ~~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~ 111 (187)
T cd03137 61 ALAAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAE 111 (187)
T ss_pred ccCCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 34578999999997753 3467889999998999999999999998873
|
A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.097 Score=51.75 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=39.5
Q ss_pred ccCCCEEEECCCCCCC----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 360 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 360 l~~~DGIllpGGfG~r----g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
+.++|+|+||||++.. ..+...+.++.+.++++|+.+||-|-++|+-
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ 138 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLN 138 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHh
Confidence 3468999999998642 3467889999999999999999999998873
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different |
| >cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31) | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.12 Score=51.73 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=38.5
Q ss_pred cCCCEEEECCCCCC----CchhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~----rg~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.++|+|++|||.|. +.-+...+.++++.++++|+-.||-|-+.+.
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~ 143 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFL 143 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHH
Confidence 57899999999775 3446778899999999999999999998665
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer. |
| >cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1 | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.12 Score=47.44 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=38.4
Q ss_pred cCCCEEEECCCCC-CC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 361 KGADGILVPGGFG-NR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 361 ~~~DGIllpGGfG-~r---g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
.++|.++||||++ .. ..+..++.++.+.++++++.+||-|-.+|+-
T Consensus 59 ~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~ 108 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAK 108 (163)
T ss_pred CCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHH
Confidence 5789999999984 22 2356788899999999999999999999884
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly |
| >PRK05632 phosphate acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.62 Score=53.74 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=33.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
||-|||+| .=++.||=.++..|.+.|+.+|++|...|
T Consensus 2 ~k~l~I~~-T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 2 SRSIYLAP-TGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 57889884 56899999999999999999999999999
|
|
| >cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.62 Score=45.40 Aligned_cols=105 Identities=18% Similarity=0.071 Sum_probs=64.2
Q ss_pred HHHHHHHhhcCCCCCeEEEEEeccCCC-cc-hHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhc
Q 009814 283 EWTSRAEICDGLHEPVRIAMVGKYTGL-SD-AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360 (524)
Q Consensus 283 ~W~~lv~~~~~~~~~v~IaiVGkY~~~-~d-ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l 360 (524)
.++.+..... ....+|+++. .... .+ ......++++..|+..... ..++. . .++ +..+.+
T Consensus 17 ~~~~~~~~~~--~~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~~~~---~~~~~--~------~~~----~~~~~l 78 (210)
T cd03129 17 ILQDFLARAG--GAGARVLFIP-TASGDRDEYGEEYRAAFERLGVEVVHL---LLIDT--A------NDP----DVVARL 78 (210)
T ss_pred HHHHHHHHcC--CCCCeEEEEe-CCCCChHHHHHHHHHHHHHcCCceEEE---eccCC--C------CCH----HHHHHH
Confidence 4455555443 2356899985 4322 11 2345678888888876543 11111 0 011 123568
Q ss_pred cCCCEEEECCCCCCC---ch--hHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNR---GV--QGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~r---g~--eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.++|+|+++||--.+ .+ .+..++++....++.|+.|+|-|..+|.
T Consensus 79 ~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~ 128 (210)
T cd03129 79 LEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMG 128 (210)
T ss_pred hhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhh
Confidence 999999999964322 11 2355666666568999999999999998
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from |
| >PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: |
Back alignment and domain information |
|---|
Probab=93.13 E-value=1.6 Score=45.43 Aligned_cols=130 Identities=17% Similarity=0.196 Sum_probs=68.3
Q ss_pred HHhc--cCCCEEEECCCCCCC-------chhHHHHHHHHHHHcCCCEEEEhHhHHHHH-HHhccccccccCCCCcccCCC
Q 009814 357 WKLL--KGADGILVPGGFGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAV-IEFARSVLNLRDANSTEFDPN 426 (524)
Q Consensus 357 ~~~l--~~~DGIllpGGfG~r-------g~eg~i~air~are~~iP~LGICLGmQll~-ie~gr~v~gl~~a~S~Ef~~~ 426 (524)
++.+ ..+||+||.|.|=.. -++...+.+.+++++..+.|.||.|.|.+. ..+|-+-..++.
T Consensus 91 ~~~i~~~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~--------- 161 (298)
T PF04204_consen 91 FDEIKDRKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPE--------- 161 (298)
T ss_dssp HHHCTTS-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEE---------
T ss_pred HHHHhhCCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCC---------
Confidence 4554 469999999987653 235677888999999999999999999955 333322111110
Q ss_pred CCCCeeeeCCCCCcCCCCCcccccceeeEe-ccCCcccccccCCcce-eeeeeccccccChhhHHhhhcCCeEEEEEeCC
Q 009814 427 TKNPCVIFMPEGSKTHMGGTMRLGSRRTYF-QIKDCKSAKLYGNRTF-IDERHRHRYEVNPDMIARLENAGLSFTGKDET 504 (524)
Q Consensus 427 ~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l-~~g~s~~~~iYg~~~~-I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~d 504 (524)
-..|.++..+ .+.+.++..+ ...-. -.+||. +++.+-+. +..+|++.+.+++
T Consensus 162 --------------------KlfGVf~~~~~~~~~pLl~Gf-dd~f~~PhSR~t---~i~~~~i~--~~~~L~vLa~s~~ 215 (298)
T PF04204_consen 162 --------------------KLFGVFEHRVLDPDHPLLRGF-DDTFFAPHSRYT---EIDRDDIK--KAPGLEVLAESEE 215 (298)
T ss_dssp --------------------EEEEEEEEEES-SS-GGGTT---SEEEEEEEEEE---E--HHHHC--T-TTEEEEEEETT
T ss_pred --------------------cceeceeeeccCCCChhhcCC-CccccCCccccc---CCCHHHHh--cCCCcEEEeccCC
Confidence 0123333331 1111222211 00111 234442 35554442 3578999999988
Q ss_pred CCeEEEEEECCCcEEEEe
Q 009814 505 SQRMEVWTFNYKIAVLLN 522 (524)
Q Consensus 505 g~~VE~iE~~~hp~f~vq 522 (524)
.. +-.+.-+++..+-+|
T Consensus 216 ~G-~~l~~~~d~r~vfi~ 232 (298)
T PF04204_consen 216 AG-VFLVASKDGRQVFIT 232 (298)
T ss_dssp TE-EEEEEECCCTEEEE-
T ss_pred cc-eEEEEcCCCCEEEEe
Confidence 76 777877776665554
|
Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.5 Score=46.51 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=35.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+.|.++| ..|.||=.+++.++..|+.+|++|.++-.|+|
T Consensus 141 ~vi~~~G--~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVG--VNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 4688888 88999999999999999999999999888877
|
|
| >TIGR01968 minD_bact septum site-determining protein MinD | Back alignment and domain information |
|---|
Probab=92.93 E-value=2.1 Score=42.16 Aligned_cols=40 Identities=30% Similarity=0.506 Sum_probs=34.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|-|.|+++ =-|.||=.+|+.++..|..+|++|-++-+||-
T Consensus 2 ~ii~v~s~-kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~ 41 (261)
T TIGR01968 2 RVIVITSG-KGGVGKTTTTANLGTALARLGKKVVLIDADIG 41 (261)
T ss_pred eEEEEecC-CCCccHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 55666554 46889999999999999999999999999994
|
This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. |
| >PRK11574 oxidative-stress-resistance chaperone; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.2 Score=48.07 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=36.7
Q ss_pred cCCCEEEECCCCCCC----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~r----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.++|.|++|||++.. ..+..+..++.+.++++|+.+||-|-.++.
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll 113 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVL 113 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHH
Confidence 468999999997532 234578899999999999999999999754
|
|
| >cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.19 Score=47.95 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=38.0
Q ss_pred ccCCCEEEECCCCCCC------chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~r------g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..++|.|+||||.+.. ..+..++.++.+.+++.++.+||-|..+|+
T Consensus 67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La 118 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLA 118 (195)
T ss_pred cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHH
Confidence 4578999999986642 235678888988899999999999999887
|
A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >COG3442 Predicted glutamine amidotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.089 Score=52.30 Aligned_cols=46 Identities=28% Similarity=0.260 Sum_probs=36.4
Q ss_pred cCCCEEEECCCCCCC------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 361 KGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 361 ~~~DGIllpGGfG~r------g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
..+|-+++.||-... ...-+-.+++.+.++++|+|-||-|.|+|.-
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~ 102 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQ 102 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccc
Confidence 578988887776542 2234567899999999999999999999984
|
|
| >cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA) | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.5 Score=47.66 Aligned_cols=39 Identities=28% Similarity=0.540 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|+||++|. .|.||=.+|+.++..+...|.||-.+-.||-
T Consensus 1 ~~~~~~gk--gG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGK--GGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECC--CCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 57888886 9999999999999999999999999999994
|
This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=92.35 E-value=2 Score=47.07 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=35.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-CCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~-g~~v~~~k~dpy 42 (524)
+.|+++| ..|.||=.+++.++..|+.+ |.+|.++-.|+|
T Consensus 101 ~vI~~vG--~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 101 TVIMMVG--LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred EEEEEEC--CCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 4677887 89999999999999999998 999999999997
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.87 Score=47.06 Aligned_cols=43 Identities=33% Similarity=0.499 Sum_probs=38.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
++.|.|+|. .|-||=..+..++..|..+|++|.++.+||+-+.
T Consensus 34 ~~~i~i~G~--~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~ 76 (300)
T TIGR00750 34 AHRVGITGT--PGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPF 76 (300)
T ss_pred ceEEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 367888975 8999999999999999999999999999997544
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >TIGR01383 not_thiJ DJ-1 family protein | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.23 Score=46.52 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=38.2
Q ss_pred ccCCCEEEECCCCCCC----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 360 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 360 l~~~DGIllpGGfG~r----g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
..++|.|+||||.+.. ..+..+..++.+.++++|+.+||-|-.+|+-
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~ 111 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLA 111 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHh
Confidence 4578999999986421 2345788889999999999999999999883
|
This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=91.94 E-value=3.2 Score=42.49 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+.|.++| ..|.||=.+++.|+..|+..|.+|.++-.|+|
T Consensus 73 ~vi~l~G--~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVG--VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 6788885 89999999999999999999999999999995
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.33 Score=45.98 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=39.0
Q ss_pred ccCCCEEEECCCCCCC--chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~r--g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..++|.++||||++.+ ..+..++.++.+.+++..+.+||-|..+++
T Consensus 62 ~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La 109 (185)
T cd03136 62 APPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLA 109 (185)
T ss_pred cCCCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHH
Confidence 3568999999997654 345688999999999999999999999887
|
A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee |
| >cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.22 Score=46.70 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=37.5
Q ss_pred ccCCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
...+|.|+||||.+.. ..+..+..++.+.++++|+.+||-|.-+|+
T Consensus 60 ~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La 108 (183)
T cd03139 60 PPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLA 108 (183)
T ss_pred CCCCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHH
Confidence 4478999999997653 335678888888889999999999987766
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.1 Score=43.80 Aligned_cols=41 Identities=32% Similarity=0.495 Sum_probs=35.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
||.|.|+++ =.|.||=.+|+-++..|..+|+||-++-+||.
T Consensus 1 m~iI~v~s~-KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 1 MKVIAIVGV-KGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CcEEEEEeC-CCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 576666543 46889999999999999999999999999995
|
Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.84 Score=43.50 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=30.1
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 11 ~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
=-|.||=.+|+.|+..|..+|++|.++-+||.-
T Consensus 9 KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 346799999999999999999999999999974
|
|
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Probab=91.01 E-value=1.3 Score=43.48 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=30.7
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 9 gv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+-=.|.||=.+|+.|+..|..+|++|-++.+||.
T Consensus 7 ~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 40 (251)
T TIGR01969 7 SGKGGTGKTTITANLGVALAKLGKKVLALDADIT 40 (251)
T ss_pred cCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3346789999999999999999999999999994
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. |
| >PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.34 Score=45.00 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=37.3
Q ss_pred ccCCCEEEECCCCCC---CchhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGN---RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~---rg~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
...+|.|+||||++. ...+..++.++.+..++.++.+||-|..+++
T Consensus 59 ~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La 107 (166)
T PF13278_consen 59 APDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLA 107 (166)
T ss_dssp CSCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHH
T ss_pred cccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHh
Confidence 567899999999992 2335677888888888999999999999998
|
... |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=90.60 E-value=1.6 Score=40.52 Aligned_cols=38 Identities=34% Similarity=0.483 Sum_probs=33.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
|.++|. +|-||=..++.++..|+.+|.+|.++..||.-
T Consensus 2 i~~~G~--~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~ 39 (148)
T cd03114 2 IGITGV--PGAGKSTLIDALITALRARGKRVAVLAIDPSS 39 (148)
T ss_pred EEEECC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 455664 78899999999999999999999999999843
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >TIGR01001 metA homoserine O-succinyltransferase | Back alignment and domain information |
|---|
Probab=90.40 E-value=11 Score=39.39 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=37.9
Q ss_pred cCCCEEEECCCCCCC-------chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~r-------g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..+||+||.|.|=.. -++...+.+.+++++-...|.||.|.|.+.
T Consensus 98 ~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaL 149 (300)
T TIGR01001 98 RKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGL 149 (300)
T ss_pred CCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 579999999987552 235677888999999999999999999865
|
The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames. |
| >PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.87 Score=48.82 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=36.9
Q ss_pred cCCCEEEECCCCCCC---chhHH-HHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNR---GVQGK-ILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~r---g~eg~-i~air~are~~iP~LGICLGmQll~ 405 (524)
.+++-+|+|||.+.+ .+.+. ...||...+++-=+||||.|--++.
T Consensus 48 ~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as 96 (367)
T PF09825_consen 48 SKCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYAS 96 (367)
T ss_pred cCCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhc
Confidence 578999999998765 33344 7889988889999999999988776
|
It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase. |
| >PRK11249 katE hydroperoxidase II; Provisional | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.91 Score=52.78 Aligned_cols=101 Identities=21% Similarity=0.127 Sum_probs=61.7
Q ss_pred CeEEEEEeccCCCc-chHHHHHHHHHHcCCceeEEee-eEEeeCCCccccccCCChhhhhHHHHh--ccCCCEEEECCCC
Q 009814 297 PVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLV-IDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPGGF 372 (524)
Q Consensus 297 ~v~IaiVGkY~~~~-day~SI~~aL~~ag~~~~v~v~-i~~i~s~~le~~~~~~~p~~y~~~~~~--l~~~DGIllpGGf 372 (524)
..+|+|+- +.... ..+..+.++|+.+|+.+.+.-. .-.+.+..= ..+. + .. ..+. ...+|+|+||||.
T Consensus 597 gRKIaILV-aDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G--~~I~--a-D~--t~~~~~Sv~FDAVvVPGG~ 668 (752)
T PRK11249 597 GRKVAILL-NDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDG--TVLP--I-AA--TFAGAPSLTFDAVIVPGGK 668 (752)
T ss_pred ccEEEEEe-cCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCC--CEEe--c-ce--eeccCCccCCCEEEECCCc
Confidence 35788874 44333 3567788999999976654310 011111110 0000 0 00 0011 1258999999986
Q ss_pred CCC----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 373 GNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 373 G~r----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
... .....+..++.+.++.+|+..||-|.++|+
T Consensus 669 ~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLa 705 (752)
T PRK11249 669 ANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKA 705 (752)
T ss_pred hhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHH
Confidence 542 234578889999999999999999999998
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=89.31 E-value=6.5 Score=36.59 Aligned_cols=37 Identities=35% Similarity=0.650 Sum_probs=32.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+.++| ..|-||=.+++.+...|...|.+|.++-.|+|
T Consensus 3 ~~~~G--~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVG--LQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 45555 46889999999999999999999999999984
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK10818 cell division inhibitor MinD; Provisional | Back alignment and domain information |
|---|
Probab=88.90 E-value=4 Score=40.86 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=34.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|-|-|++ -=.|.||=.+|+.|+..|..+|.+|-++-+||.
T Consensus 3 kviav~s-~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 3 RIIVVTS-GKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred eEEEEEe-CCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5555553 457899999999999999999999999999995
|
|
| >TIGR00347 bioD dethiobiotin synthase | Back alignment and domain information |
|---|
Probab=88.80 E-value=2.6 Score=38.96 Aligned_cols=154 Identities=20% Similarity=0.264 Sum_probs=80.8
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCCccc
Q 009814 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDNNIT 89 (524)
Q Consensus 10 v~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~~~~~~n~t 89 (524)
.-.+.||=.+++.|++.|+.+|+||-.+| |.+||- + . .|-|.-.-.+++.... +.+..
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~k-------------P~~~~~----~-~--~d~d~~~i~~~~~~~~--~~~~~ 62 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYYK-------------PVQTGI----E-K--TNSDALLLQNISGTAL--DWDEV 62 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEEE-------------eeeeCC----C-C--CchHHHHHHHHcCCCC--chhcc
Confidence 46789999999999999999999998853 666752 0 0 1222111112221111 11111
Q ss_pred chHhhH-----HHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH--H
Q 009814 90 TGKIYQ-----SVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE--A 162 (524)
Q Consensus 90 ~g~iy~-----~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~e--a 162 (524)
.+-.|. .+....+ + + |....+|++.+.+++ .++|++|||-.|.... |+.+ .
T Consensus 63 ~~~~~~~~~~p~~~~~~~-~----~-----~~~~~~i~~~~~~l~--------~~~D~viid~~g~~~~----~~~~~~~ 120 (166)
T TIGR00347 63 NPYAFALPLSPHIAADQE-G----R-----PIDLEELSKHLRTLE--------QKYDFVLVEGAGGLCV----PITEEYT 120 (166)
T ss_pred CCeeeCCCCChHHHHHHh-C----C-----CCCHHHHHHHHHHHH--------hcCCEEEEEcCCcccc----CCCCCCc
Confidence 111110 1111110 0 0 223346777787764 3689999999885443 2211 1
Q ss_pred HHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEE
Q 009814 163 LGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (524)
Q Consensus 163 ~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~ 216 (524)
..++-..++-. ++.|= . ...++ -.=++-+.+.|++.|+..-++|+
T Consensus 121 ~~dl~~~~~~~-vilV~----~--~~~~~--~~~~~~~~~~l~~~~~~i~gvv~ 165 (166)
T TIGR00347 121 TADLIKLLQLP-VILVV----R--VKLGT--INHTLLTVEHARQTGLTLAGVIL 165 (166)
T ss_pred HHHHHHHhCCC-EEEEE----C--CCCcH--HHHHHHHHHHHHHCCCCeEEEEe
Confidence 23344444422 43331 0 01122 23456677788899999888876
|
Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=87.98 E-value=6.4 Score=43.06 Aligned_cols=144 Identities=19% Similarity=0.235 Sum_probs=87.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~ 81 (524)
+.|.+.|- .|.||=.+++.|+..|..+|++|.++-.|||- +|..+-.
T Consensus 242 ~vI~LVGp--tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R---iaAvEQL---------------------------- 288 (436)
T PRK11889 242 QTIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR---IGTVQQL---------------------------- 288 (436)
T ss_pred cEEEEECC--CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc---hHHHHHH----------------------------
Confidence 45667776 99999999999999999999999999999875 1111110
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH
Q 009814 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (524)
Q Consensus 82 ~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~e 161 (524)
+.|.+ -+|-.|-++. -.+++.+.|..++. ..+.|+|||...|.-- -....++
T Consensus 289 ----------k~yae---------~lgipv~v~~-d~~~L~~aL~~lk~------~~~~DvVLIDTaGRs~--kd~~lm~ 340 (436)
T PRK11889 289 ----------QDYVK---------TIGFEVIAVR-DEAAMTRALTYFKE------EARVDYILIDTAGKNY--RASETVE 340 (436)
T ss_pred ----------HHHhh---------hcCCcEEecC-CHHHHHHHHHHHHh------ccCCCEEEEeCccccC--cCHHHHH
Confidence 01111 1343333222 24567777777752 2368999999888833 2334556
Q ss_pred HHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEe
Q 009814 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 217 (524)
Q Consensus 162 a~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R 217 (524)
.++++.....+..++++ +++ -.|.+-....++.++. +.+|.+|.-
T Consensus 341 EL~~~lk~~~PdevlLV-------LsA--Ttk~~d~~~i~~~F~~--~~idglI~T 385 (436)
T PRK11889 341 EMIETMGQVEPDYICLT-------LSA--SMKSKDMIEIITNFKD--IHIDGIVFT 385 (436)
T ss_pred HHHHHHhhcCCCeEEEE-------ECC--ccChHHHHHHHHHhcC--CCCCEEEEE
Confidence 66666555444433222 433 2233334456666665 556777764
|
|
| >PRK09393 ftrA transcriptional activator FtrA; Provisional | Back alignment and domain information |
|---|
Probab=87.88 E-value=0.93 Score=46.91 Aligned_cols=47 Identities=30% Similarity=0.359 Sum_probs=38.3
Q ss_pred hccCCCEEEECCCCCCC--chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 359 LLKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~r--g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
...++|.|+||||.+.. .....++.++.+.+++.++.|||-|--+|+
T Consensus 72 ~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La 120 (322)
T PRK09393 72 LLDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLA 120 (322)
T ss_pred ccCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHH
Confidence 45678999999987643 235678889888889999999999998766
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=87.75 E-value=4.2 Score=44.56 Aligned_cols=141 Identities=22% Similarity=0.334 Sum_probs=83.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHH-HCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~-~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~ 81 (524)
.|+++| ..|.||=.+++.++..|+ .+|.+|.++-+|+|-- +.
T Consensus 101 vi~~vG--~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~---~a-------------------------------- 143 (428)
T TIGR00959 101 VILMVG--LQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP---AA-------------------------------- 143 (428)
T ss_pred EEEEEC--CCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch---HH--------------------------------
Confidence 355555 579999999999999987 5899999999999521 00
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHH-HHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcch
Q 009814 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEI-QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMP 158 (524)
Q Consensus 82 ~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit--~ei-~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~p 158 (524)
+-+-++.+...|-.+...+.-. .+| ++.++.+. ..++|+|||...|-.. +.. .
T Consensus 144 ---------------~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~-------~~~~DvVIIDTaGr~~-~d~-~ 199 (428)
T TIGR00959 144 ---------------IEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAK-------ENGFDVVIVDTAGRLQ-IDE-E 199 (428)
T ss_pred ---------------HHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHH-------hcCCCEEEEeCCCccc-cCH-H
Confidence 0011122233343344333211 233 34444442 3578999999999765 222 3
Q ss_pred HHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhc--CCCcccEEEEe
Q 009814 159 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRG--QGLTPNILACR 217 (524)
Q Consensus 159 f~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs--~Gi~pd~lv~R 217 (524)
-++.++++..-+.++.+++| +.+. | .|.+++..+. ..+..+++|+-
T Consensus 200 l~~eL~~i~~~~~p~e~lLV-------vda~----t--gq~~~~~a~~f~~~v~i~giIlT 247 (428)
T TIGR00959 200 LMEELAAIKEILNPDEILLV-------VDAM----T--GQDAVNTAKTFNERLGLTGVVLT 247 (428)
T ss_pred HHHHHHHHHHhhCCceEEEE-------Eecc----c--hHHHHHHHHHHHhhCCCCEEEEe
Confidence 45777888777766665443 2221 2 2555554433 23566787754
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=86.99 E-value=7.7 Score=38.70 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=34.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
||.|-|+ +-==|.||=.+|..|+..|..+|++|.++-.||--|
T Consensus 1 M~iI~v~-n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s 43 (231)
T PRK13849 1 MKLLTFC-SFKGGAGKTTALMGLCAALASDGKRVALFEADENRP 43 (231)
T ss_pred CeEEEEE-CCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 5544443 233467999999999999999999999999999755
|
|
| >PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional | Back alignment and domain information |
|---|
Probab=86.74 E-value=1.2 Score=44.65 Aligned_cols=37 Identities=32% Similarity=0.250 Sum_probs=35.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~ 39 (524)
||.|.|+|- |+-||=..+..|-..|+.+|++|..+|-
T Consensus 1 m~vi~ivG~--~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGF--KDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECC--CCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 789999998 8999999999999999999999999993
|
|
| >COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.28 E-value=4.6 Score=40.50 Aligned_cols=183 Identities=20% Similarity=0.283 Sum_probs=115.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||-+|||| .=-++||=+++|-|...|+.+|++|...| |.|=|. +....+=|.=.+.|+.++
T Consensus 2 ~~~~fVtG-TDT~VGKTv~S~aL~~~l~~~g~~~~~~K-------------PVqsG~-----~~~~~~~D~~~l~~~~~~ 62 (223)
T COG0132 2 MKRFFVTG-TDTGVGKTVVSAALAQALKQQGYSVAGYK-------------PVQTGS-----EETAENSDALVLQRLSGL 62 (223)
T ss_pred CceEEEEe-CCCCccHHHHHHHHHHHHHhCCCeeEEEC-------------ceeeCC-----CCCCCCchHHHHHHhcCC
Confidence 68899997 45689999999999999999999998887 777664 111114566677888777
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc--cCcch
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD--IESMP 158 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgd--ies~p 158 (524)
.++. -.++--.|+.-..--..-+.-|+++. .++|..+..+. ..+.|.+|||=-|=+.= -|...
T Consensus 63 ~~~~--~~~~py~f~~P~sPhlAa~~eg~~I~-----~~~l~~~l~~l--------~~~~d~vlVEGAGGl~vPl~~~~~ 127 (223)
T COG0132 63 DLSY--ELINPYRFKEPLSPHLAAELEGRTID-----LEKLSQGLRQL--------LKKYDLVLVEGAGGLLVPLTEEYT 127 (223)
T ss_pred Cccc--ccccceecCCCCCcHHHHhhcCCccc-----HHHHHHHHHhh--------hcccCEEEEeCCCceeeecCCccc
Confidence 7651 12222223322222222222255522 24444444444 33889999996554311 12367
Q ss_pred HHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccc
Q 009814 159 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKL 230 (524)
Q Consensus 159 f~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~Ki 230 (524)
|..=++|++..+ ++.+++ .| |-.- -|=-|+..+++.||..-++|.-+..+.+.......
T Consensus 128 ~~D~~~~~~lpv----ILV~~~----~L---GtIN--HtlLt~eal~~~gl~l~G~I~n~~~~~~~~~~~~~ 186 (223)
T COG0132 128 FADLAVQLQLPV----ILVVGI----KL---GTIN--HTLLTVEALRARGLPLAGWVANGINPELDHYAEIN 186 (223)
T ss_pred HHHHHHHcCCCE----EEEecC----Cc---cHHH--HHHHHHHHHHHCCCCEEEEEEccCCCchhHHHHHH
Confidence 888888888653 222221 23 2222 45568899999999999999998887776654443
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=86.23 E-value=1.2 Score=45.84 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=34.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-C-CeeEEeeecccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-G-LRVTCIKIDPYL 43 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~-g-~~v~~~k~dpyl 43 (524)
+.|.+.|. +|.||=.+++.|+..+..+ | ++|.++.+|||-
T Consensus 195 ~vi~~vGp--tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 195 GVIALVGP--TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35667775 8999999999999999876 5 999999999864
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=86.16 E-value=2.9 Score=35.51 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=32.2
Q ss_pred eCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 7 TGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 7 tggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
-.|-=.|.||=.+|+.++..|..+|.+|-++-.||.
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 344456899999999999999999999999999998
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >TIGR02069 cyanophycinase cyanophycinase | Back alignment and domain information |
|---|
Probab=85.78 E-value=4.3 Score=41.20 Aligned_cols=107 Identities=19% Similarity=0.120 Sum_probs=66.5
Q ss_pred HHHHHHHhhcCCCCCeEEEEEeccCC-CcchH-HHHHHHHHHcCCceeEEeeeEEeeC-CCccccccCCChhhhhHHHHh
Q 009814 283 EWTSRAEICDGLHEPVRIAMVGKYTG-LSDAY-LSILKALLHASVDLRKKLVIDWIPA-CDLEDATEKENPDAYKAAWKL 359 (524)
Q Consensus 283 ~W~~lv~~~~~~~~~v~IaiVGkY~~-~~day-~SI~~aL~~ag~~~~v~v~i~~i~s-~~le~~~~~~~p~~y~~~~~~ 359 (524)
-|+.+++..... ..+|+++. ..+ ..+.| ....++|+..|+.....+.+ ++ ++. .+| +..+.
T Consensus 16 i~~~~~~lag~~--~~rI~~ip-tAS~~~~~~~~~~~~~~~~lG~~~v~~l~i---~~r~~a------~~~----~~~~~ 79 (250)
T TIGR02069 16 ILREFVSRAGGE--DAIIVIIT-SASEEPREVGERYITIFSRLGVKEVKILDV---REREDA------SDE----NAIAL 79 (250)
T ss_pred HHHHHHHHhCCC--CceEEEEe-CCCCChHHHHHHHHHHHHHcCCceeEEEec---CChHHc------cCH----HHHHH
Confidence 466666666442 46899995 322 22233 23467888889853322222 11 111 111 12246
Q ss_pred ccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~r-----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
+.++|+|++.||-=.+ .-.+...+++.+.+++.|+.|.--|.-+|+
T Consensus 80 l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~ 130 (250)
T TIGR02069 80 LSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMS 130 (250)
T ss_pred HhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcc
Confidence 8899999999985333 123566788888889999999999998775
|
This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. |
| >PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A | Back alignment and domain information |
|---|
Probab=85.77 E-value=1.9 Score=41.28 Aligned_cols=165 Identities=19% Similarity=0.277 Sum_probs=90.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~~ 81 (524)
|=||||| .=.+.||=.+++.|.+.|+.+|.+|...| |+++|.. + |=|.-...++.+..
T Consensus 1 r~i~I~~-t~t~vGKT~vslgL~~~l~~~g~~v~~~K-------------Pi~~~~~---~-----d~d~~~~~~~~~~~ 58 (199)
T PF13500_consen 1 RTIFITG-TDTGVGKTVVSLGLARALRRRGIKVGYFK-------------PIQTGPE---D-----DEDAELIRELFGLS 58 (199)
T ss_dssp -EEEEEE-SSSSSSHHHHHHHHHHHHHHTTSEEEEEE-------------EEEESCC---C-----SSHHHHHHHHCCTC
T ss_pred CEEEEEe-CCCCCCHHHHHHHHHHHHHhCCCceEEEe-------------eeEecCC---C-----CchHHHHHHHhCCC
Confidence 3467765 45789999999999999999999998777 8888876 1 22444456666655
Q ss_pred CCCC--CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchH
Q 009814 82 LTRD--NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPF 159 (524)
Q Consensus 82 ~~~~--~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf 159 (524)
.+.. +-++-..-....+..++.| ..++ .++|+ .++++ .+.|++|||=-|.+.. ....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~i~--~~~l~--------~~~D~vlVEGag~~~~--~~~~ 117 (199)
T PF13500_consen 59 EPPDDPSPYTFDEPASPHLAAELEG----VDID-----LERII--YKELA--------EEYDVVLVEGAGGLMV--PIFS 117 (199)
T ss_dssp CCHHHHECEEESSSS-HHHHHHHHT-------------HHHHH--HHHCH--------TTTCEEEEEESSSTTS--ECCT
T ss_pred cccccccccccCcccCHHHHhhccC----Cccc-----HHHHH--HHHHh--------hcCCEEEEeCCcccCc--cccc
Confidence 4322 2222222233344444443 2222 22332 24443 3779999996555542 2222
Q ss_pred HHHHHHhhhhcCCCCEEEEEeeeeeeecCCCcccc-CCchhhHHHhhcCCCcccEEEEecC
Q 009814 160 IEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKT-KPTQHSVRGLRGQGLTPNILACRST 219 (524)
Q Consensus 160 ~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~kt-kptq~sv~~lrs~Gi~pd~lv~R~~ 219 (524)
-.-..++...++-. +++| . .+...| -=+..+++.++..|+..-++|+-..
T Consensus 118 ~~~n~dia~~L~a~-vIlV-------~--~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~~ 168 (199)
T PF13500_consen 118 GDLNADIAKALGAP-VILV-------A--SGRLGTINHTLLTIEALKQRGIRVLGVILNRV 168 (199)
T ss_dssp TEEHHHHHHHHT-E-EEEE-------E--ESSTTHHHHHHHHHHHHHCTTS-EEEEEEEEC
T ss_pred ChHHHHHHHHcCCC-EEEE-------e--CCCCCCHHHHHHHHHHHHhcCCCEEEEEEECC
Confidence 12233444444421 3332 2 122222 0123466777888999999888773
|
... |
| >PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional | Back alignment and domain information |
|---|
Probab=84.56 E-value=2.2 Score=43.97 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=36.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
||.|-|+|- ||-||=..+..|-..|+.+| +|..+|.||-
T Consensus 1 M~~i~i~G~--~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h 39 (274)
T PRK14493 1 MKVLSIVGY--KATGKTTLVERLVDRLSGRG-RVGTVKHMDT 39 (274)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHHHhCC-CEEEEEEcCC
Confidence 788889988 89999999999999999999 9999999993
|
|
| >CHL00072 chlL photochlorophyllide reductase subunit L | Back alignment and domain information |
|---|
Probab=84.44 E-value=1.6 Score=44.93 Aligned_cols=43 Identities=35% Similarity=0.519 Sum_probs=38.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (524)
|| |.|+| =-|+||=.++++|+..|..+|+||-++-+||=.|.=
T Consensus 1 m~-ia~~g--KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t 43 (290)
T CHL00072 1 MK-LAVYG--KGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDST 43 (290)
T ss_pred Ce-EEEEC--CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCccc
Confidence 67 77887 788999999999999999999999999999987753
|
|
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=83.42 E-value=3 Score=39.33 Aligned_cols=40 Identities=40% Similarity=0.387 Sum_probs=36.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|+-|-|+|- ||-||-..+.-|-..|+.+|++|..+|.|+.
T Consensus 1 m~vi~i~G~--~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 1 MKVIGFVGY--SGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 677888887 8999999999999999999999999999876
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell | Back alignment and domain information |
|---|
Probab=83.15 E-value=7.3 Score=38.10 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=33.9
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
++++| -.|.||=.+++.++..+...|++|-++-.||--+
T Consensus 2 ~~~~g--~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~ 40 (217)
T cd02035 2 IFFTG--KGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHN 40 (217)
T ss_pred EEEeC--CCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcc
Confidence 34444 6899999999999999999999999999998764
|
This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. |
| >COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.88 E-value=1.8 Score=43.63 Aligned_cols=39 Identities=36% Similarity=0.604 Sum_probs=34.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
.|.|+||-|= -|+||=.++|+||.-|..+|.||..+-+|
T Consensus 2 ~~iIVvTSGK-GGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 2 ARIIVVTSGK-GGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred ceEEEEecCC-CCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 3789999774 57899999999999999999999998765
|
|
| >PRK13232 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=82.59 E-value=2.1 Score=43.28 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=39.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
||-|-|+ | =-|+||=.++..|+..|..+|+||-++=+||..|-
T Consensus 1 ~~~iav~-g-KGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 1 MRQIAIY-G-KGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADS 43 (273)
T ss_pred CCEEEEE-C-CCCCcHHHHHHHHHHHHHhhCCCeEEEeccccccc
Confidence 6777778 5 78999999999999999999999999999999885
|
|
| >cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=82.06 E-value=2.2 Score=44.08 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=38.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCC
Q 009814 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAG 48 (524)
Q Consensus 4 i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~g 48 (524)
|-|||| ||-||=.++.++..+|+..|.+|..+..|.|--.|--
T Consensus 2 IgItG~--SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~ 44 (277)
T cd02029 2 IAVTGS--SGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERM 44 (277)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCch
Confidence 678996 8999999999999999999999999999999775543
|
PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
|---|
Probab=81.49 E-value=2.7 Score=41.82 Aligned_cols=44 Identities=25% Similarity=0.492 Sum_probs=39.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (524)
||-|.|. | =-|.||=.+++-|+..|..+|+||-++-+||-.|.-
T Consensus 1 m~~iav~-~-KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~ 44 (270)
T cd02040 1 MRQIAIY-G-KGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADST 44 (270)
T ss_pred CcEEEEE-e-CCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCch
Confidence 6778887 5 889999999999999999999999999999998753
|
Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia. |
| >COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.48 E-value=2.6 Score=44.49 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=43.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMS 51 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtms 51 (524)
+++||+|| =.|+||=.+||+++..|-+.|.||-.+-.||=-|...-...
T Consensus 2 ~riv~f~G--KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTG--KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEec--CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 58999998 47899999999999999999999999999998887655444
|
|
| >PRK13230 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.34 E-value=2.9 Score=42.38 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=40.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDA 47 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~ 47 (524)
||-|.++ | =.|.||=.+|..|+..|..+|+||-++=+||--|.=.
T Consensus 1 ~~~i~~~-g-KGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~ 45 (279)
T PRK13230 1 MRKFCFY-G-KGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTR 45 (279)
T ss_pred CcEEEEE-C-CCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccc
Confidence 6778888 4 8899999999999999999999999999999877633
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 524 | ||||
| 3nva_A | 535 | Dimeric Form Of Ctp Synthase From Sulfolobus Solfat | 1e-114 | ||
| 1vco_A | 550 | Crystal Structure Of T.Th. Hb8 Ctp Synthetase Compl | 1e-111 | ||
| 1vcm_A | 550 | Crystal Structure Of T.Th. Hb8 Ctp Synthetase Lengt | 1e-111 | ||
| 1s1m_A | 545 | Crystal Structure Of E. Coli Ctp Synthetase Length | 1e-107 | ||
| 2vo1_A | 295 | Crystal Structure Of The Synthetase Domain Of Human | 1e-83 | ||
| 3ihl_A | 282 | Human Ctps2 Crystal Structure Length = 282 | 3e-82 | ||
| 2vkt_A | 289 | Human Ctp Synthetase 2 - Glutaminase Domain Length | 6e-63 | ||
| 2v4u_A | 289 | Human Ctp Synthetase 2 - Glutaminase Domain In Comp | 1e-61 | ||
| 2w7t_A | 273 | Trypanosoma Brucei Ctps - Glutaminase Domain With B | 2e-38 |
| >pdb|3NVA|A Chain A, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus Length = 535 | Back alignment and structure |
|
| >pdb|1VCO|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase Complex With Glutamine Length = 550 | Back alignment and structure |
|
| >pdb|1VCM|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase Length = 550 | Back alignment and structure |
|
| >pdb|1S1M|A Chain A, Crystal Structure Of E. Coli Ctp Synthetase Length = 545 | Back alignment and structure |
|
| >pdb|2VO1|A Chain A, Crystal Structure Of The Synthetase Domain Of Human Ctp Synthetase Length = 295 | Back alignment and structure |
|
| >pdb|3IHL|A Chain A, Human Ctps2 Crystal Structure Length = 282 | Back alignment and structure |
|
| >pdb|2VKT|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain Length = 289 | Back alignment and structure |
|
| >pdb|2V4U|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain In Complex With 5-Oxo-L-Norleucine Length = 289 | Back alignment and structure |
|
| >pdb|2W7T|A Chain A, Trypanosoma Brucei Ctps - Glutaminase Domain With Bound Acivicin Length = 273 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 524 | |||
| 3nva_A | 535 | CTP synthase; rossman fold, nucleotide binding, LI | 0.0 | |
| 1vco_A | 550 | CTP synthetase; tetramer, riken structural genomic | 0.0 | |
| 1s1m_A | 545 | CTP synthase; CTP synthetase, UTP:ammonia ligase ( | 0.0 | |
| 2c5m_A | 294 | CTP synthase; cytidine 5-prime triphosphate synthe | 0.0 | |
| 2v4u_A | 289 | CTP synthase 2; pyrimidine biosynthesis, glutamine | 1e-111 | |
| 2w7t_A | 273 | CTP synthetase, putative cytidine triphosphate syn | 3e-92 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-11 | |
| 3fij_A | 254 | LIN1909 protein; 11172J, uncharacterized protein, | 5e-04 |
| >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} Length = 535 | Back alignment and structure |
|---|
Score = 742 bits (1919), Expect = 0.0
Identities = 233/502 (46%), Positives = 338/502 (67%), Gaps = 21/502 (4%)
Query: 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVL 61
KY++VTGGV+S +GKG +SIG+LLK G VT +KIDPY+N DAGTM+P+ HGEVFV
Sbjct: 4 KYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINVDAGTMNPYMHGEVFVT 63
Query: 62 DDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEI 121
+DG E DLDLG+YERFMD+ +T+ NNIT GK+Y VI KER+G YLG+TVQ++PH+TD+I
Sbjct: 64 EDGAETDLDLGHYERFMDVNMTKYNNITAGKVYFEVIKKEREGKYLGQTVQIIPHVTDQI 123
Query: 122 QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVS 181
+D I + K ++ ++E+GGT+GDIES+PF+EA+ Q G N +H++
Sbjct: 124 KDMIRYAS------KINNAEITLVEIGGTVGDIESLPFLEAVRQLKLEEGEDNVIFVHIA 177
Query: 182 LVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241
LV L+V GE KTKP QHSV+ LR G+ P+ + R+T+ LDD + K++ F +V +I
Sbjct: 178 LVEYLSVTGELKTKPLQHSVQELRRIGIQPDFIVGRATLPLDDETRRKIALFTNVKVDHI 237
Query: 242 ITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLH--EPVR 299
++ YDV + +P++L QK I L L+ ++ L +W S G++ + +
Sbjct: 238 VSSYDVETSYEVPIILESQKLVSKILSRLKLE--DRQVDLTDWISFVNNIKGINSKKTIN 295
Query: 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359
IA+VGKYT L D+Y+SI +A+ HAS + + + WI + DLE ++ +N + ++
Sbjct: 296 IALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLE--SDTKNLN------EI 347
Query: 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 419
L +GI+V GFG+RG +GKI A KYAREH IP+LGIC G Q++++EFAR VL L +AN
Sbjct: 348 LGNVNGIIVLPGFGSRGAEGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEAN 407
Query: 420 STEFDPNTKNPCVIFMPE-GSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHR 478
STE +PNTK+P + + E + T +GGTMRLG+++ + + + +LYG + + ERHR
Sbjct: 408 STEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKIILK-EGTIAYQLYG-KKVVYERHR 465
Query: 479 HRYEVNPDMIARLENAGLSFTG 500
HRYEVNP + LE+AGL +G
Sbjct: 466 HRYEVNPKYVDILEDAGLVVSG 487
|
| >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A Length = 550 | Back alignment and structure |
|---|
Score = 741 bits (1916), Expect = 0.0
Identities = 247/503 (49%), Positives = 333/503 (66%), Gaps = 27/503 (5%)
Query: 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVL 61
KYV +TGGVVS LGKG+ SS+G LL+A G RVT IKIDPY+N DAGTM P+EHGEVFV
Sbjct: 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVT 72
Query: 62 DDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEI 121
DG E DLD+G+YERF+D+ L+R NN+TTG++Y SVI KER+G+YL +TVQV+PHITDEI
Sbjct: 73 ADGAETDLDIGHYERFLDMDLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEI 132
Query: 122 QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVS 181
++ I +VA +E ++ V+E+GGT+GDIES+PF+EA+ QF + G GN +H++
Sbjct: 133 KERIRKVA------EEQKAEIVVVEVGGTVGDIESLPFLEAIRQFRFDEGEGNTLYLHLT 186
Query: 182 LVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241
LVP L E KTKPTQHSV LRG G+ P+IL RS + + V+ K++ F +V ++
Sbjct: 187 LVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGHV 246
Query: 242 ITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEP---V 298
+ V +++ +PLLL +Q A+ + L L+ P L W E L P V
Sbjct: 247 FSSPTVEHLYEVPLLLEEQGLGRAVERALGLE--AVIPNLSFWQ---EAVRVLKHPERTV 301
Query: 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK 358
+IA+ GKY + DAYLS+L+AL HA + R ++ + W+ A L E + + +
Sbjct: 302 KIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESL----EAADLE------E 351
Query: 359 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418
+ GILVPGGFG RG++GK+ AA+YARE +IPYLGICLG+Q+AVIEFAR+V L+ A
Sbjct: 352 AFRDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGA 411
Query: 419 NSTEFDPNTKNPCVIFMPE-GSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERH 477
NSTEFDP+T +P + MPE +GGTMRLG + +LYG + + ERH
Sbjct: 412 NSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIK-PGTLLHRLYG-KEEVLERH 469
Query: 478 RHRYEVNPDMIARLENAGLSFTG 500
RHRYEVNP + LE AGL +
Sbjct: 470 RHRYEVNPLYVDGLERAGLVVSA 492
|
| >1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* Length = 545 | Back alignment and structure |
|---|
Score = 729 bits (1885), Expect = 0.0
Identities = 239/513 (46%), Positives = 325/513 (63%), Gaps = 40/513 (7%)
Query: 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVL 61
Y+ VTGGVVS LGKG+ A+S+ +L+A GL VT +K+DPY+N D GTMSP +HGEVFV
Sbjct: 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVT 63
Query: 62 DDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEI 121
+DG E DLDLG+YERF+ K++R NN TTG+IY V+ KER+GDYLG TVQV+PHIT+ I
Sbjct: 64 EDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAI 123
Query: 122 QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVS 181
++ + DV ++E+GGT+GDIES+PF+EA+ Q + +G + +H++
Sbjct: 124 KERVLEGG--------EGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLT 175
Query: 182 LVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241
LVP + GE KTKPTQHSV+ L G+ P+IL CRS A+ N + K++ FC+VPE+ +
Sbjct: 176 LVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAV 235
Query: 242 ITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEP---V 298
I+L DV +I+ IP LL+ Q + I K +L E L EW ++ P V
Sbjct: 236 ISLKDVDSIYKIPGLLKSQGLDDYICKRFSLN--CPEANLSEWE---QVIFEEANPVSEV 290
Query: 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK 358
I MVGKY L DAY S+++AL H + R + I I + D+ E +
Sbjct: 291 TIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDV----ETRGVE------- 339
Query: 359 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418
+LKG D ILVPGGFG RGV+G I A++ARE+ IPYLGICLGMQVA+I++AR V N+ +A
Sbjct: 340 ILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENA 399
Query: 419 NSTEFDPNTKNPCVIFMPE-----------GSKTHMGGTMRLGSRRTYFQIKDCKSAKLY 467
NSTEF P+ K P V + E K+ +GGTMRLG+++ D +LY
Sbjct: 400 NSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLV-DDSLVRQLY 458
Query: 468 GNRTFIDERHRHRYEVNPDMIARLENAGLSFTG 500
I ERHRHRYEVN ++ ++E+AGL G
Sbjct: 459 N-APTIVERHRHRYEVNNMLLKQIEDAGLRVAG 490
|
| >2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A Length = 289 | Back alignment and structure |
|---|
Score = 332 bits (852), Expect = e-111
Identities = 116/241 (48%), Positives = 155/241 (64%), Gaps = 6/241 (2%)
Query: 270 LNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 329
+ + L + + IA+VGKYT L D Y S+ KAL H+++ +
Sbjct: 4 HHHH--SSGVDLGTE----NLYFQSMKICSIALVGKYTKLRDCYASVFKALEHSALAINH 57
Query: 330 KLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYARE 389
KL + +I + DLE TE E+P + AW+ L ADGILVPGGFG RG GK+ A +AR
Sbjct: 58 KLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFGIRGTLGKLQAISWART 117
Query: 390 HRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 449
+IP+LG+ LGMQ+AVIEFAR+ LNL+DA+STEF PN P VI MPE + ++GGTMRL
Sbjct: 118 KKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPGNLGGTMRL 177
Query: 450 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRME 509
G RRT F+ ++ KLYG+ FI+ERHRHR+EVNP++I + E LSF G+D RME
Sbjct: 178 GIRRTVFKTENSILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRME 237
Query: 510 V 510
+
Sbjct: 238 I 238
|
| >2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} Length = 273 | Back alignment and structure |
|---|
Score = 281 bits (721), Expect = 3e-92
Identities = 89/212 (41%), Positives = 115/212 (54%), Gaps = 9/212 (4%)
Query: 295 HEPVRIAMVGKYT-GLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAY 353
+ VRIA VGKY D Y S+L+ H + L+ +L I ++ + +LE E
Sbjct: 6 NPTVRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADE----- 60
Query: 354 KAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVL 413
A K L G DGI VPGGFGNRGV GK AA+ AR + IPY G+ LGMQVAVIE +R+V+
Sbjct: 61 --ARKALLGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVV 118
Query: 414 NLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFI 473
DANS EF+ + + V M + MG M LG+ Y K AK+Y +
Sbjct: 119 GWSDANSEEFNKESTHQVVRIMDC-DRNKMGANMHLGACDVYIVEKSSIMAKIYSKSNIV 177
Query: 474 DERHRHRYEVNPDMIARLENAGLSFTGKDETS 505
ERHRHRYEVN L AGL + + +
Sbjct: 178 VERHRHRYEVNTAYFEDLRKAGLCISAVTDPT 209
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 4e-11
Identities = 75/522 (14%), Positives = 162/522 (31%), Gaps = 143/522 (27%)
Query: 74 YERFMDIKLTRDNNITTGKIYQSVIDKERKG-------DYLGKTVQVVP--HIT-----D 119
++F++ L + I D L QV +++
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 120 EIQDWIERV---AMIPVDGKEG------PVDVC-----VIELGG-----TIGDIES-MPF 159
+++ + + + +DG G +DVC ++ + + S
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 160 IEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRST 219
+E L + Y++ P N+ + + + Q +R L N L
Sbjct: 199 LEMLQKLLYQIDP-NWTSRSDHSSNI-----KLRIHSIQAELRRLLKSKPYENCL----- 247
Query: 220 VALDDNVKGK--LSQF---CHV----PEQNIITLYDVPNIWHIPL------LLRDQKAHE 264
+ L + V+ + F C + + + HI L L D+ +
Sbjct: 248 LVLLN-VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--K 304
Query: 265 AIF-KVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGK----YTGLSDAYLSI--- 316
++ K L+ + L E+ P R++++ + D + +
Sbjct: 305 SLLLKYLD----CRPQDLPR-----EVLTTN--PRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 317 -LKALLHASV------DLRK---KLVI---D-WIPACDLEDATEKENPDAYKAAWKLLKG 362
L ++ +S+ + RK +L + IP L W +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS------------LIWFDVIK 401
Query: 363 ADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFA---RSVLNLRDAN 419
+D ++V L K +E I I L ++V + RS+++
Sbjct: 402 SDVMVVVNKLHKYS-----LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNI 455
Query: 420 STEFDPNTKNPCV----IFMPEGSKTHMG---GTMRLGSRRTYFQIKDCKSAKLYGNRTF 472
FD + P + +H+G + R T F+ ++ + F
Sbjct: 456 PKTFDSDDLIPPYLDQYFY------SHIGHHLKNIEHPERMTLFR-------MVFLDFRF 502
Query: 473 IDERHRHR-YEVNP-----DMIARLENAGLSFTGKDETSQRM 508
++++ RH N + + +L+ D +R+
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
|
| >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Length = 254 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 30/86 (34%)
Query: 336 IPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG-------FGNRGVQGK-------- 380
+P D A + + DG+L+ GG + Q
Sbjct: 47 LPIDDPSTAVQ------------AISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRD 94
Query: 381 ---ILAAKYAREHRIPYLGICLGMQV 403
I + A + P IC GMQ+
Sbjct: 95 SYEIALVRAALDAGKPIFAICRGMQL 120
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 524 | |||
| 3nva_A | 535 | CTP synthase; rossman fold, nucleotide binding, LI | 100.0 | |
| 1vco_A | 550 | CTP synthetase; tetramer, riken structural genomic | 100.0 | |
| 1s1m_A | 545 | CTP synthase; CTP synthetase, UTP:ammonia ligase ( | 100.0 | |
| 2c5m_A | 294 | CTP synthase; cytidine 5-prime triphosphate synthe | 100.0 | |
| 2vo1_A | 295 | CTP synthase 1; pyrimidine biosynthesis, glutamine | 100.0 | |
| 2v4u_A | 289 | CTP synthase 2; pyrimidine biosynthesis, glutamine | 100.0 | |
| 2w7t_A | 273 | CTP synthetase, putative cytidine triphosphate syn | 100.0 | |
| 1a9x_B | 379 | Carbamoyl phosphate synthetase (small chain); amid | 100.0 | |
| 3fij_A | 254 | LIN1909 protein; 11172J, uncharacterized protein, | 99.83 | |
| 4gud_A | 211 | Imidazole glycerol phosphate synthase subunit His; | 99.78 | |
| 1qdl_B | 195 | Protein (anthranilate synthase (TRPG-SUBUNIT)); tr | 99.77 | |
| 2a9v_A | 212 | GMP synthase; structural genomics, joint center fo | 99.76 | |
| 1l9x_A | 315 | Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO | 99.73 | |
| 2vpi_A | 218 | GMP synthase; guanine monophosphate synthetase, ph | 99.73 | |
| 1wl8_A | 189 | GMP synthase [glutamine-hydrolyzing] subunit A; tr | 99.72 | |
| 1o1y_A | 239 | Conserved hypothetical protein TM1158; flavodoxin- | 99.7 | |
| 3uow_A | 556 | GMP synthetase; structural genomics consortium, SG | 99.68 | |
| 1i1q_B | 192 | Anthranilate synthase component II; tryptophan bio | 99.66 | |
| 3tqi_A | 527 | GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 | 99.64 | |
| 3r75_A | 645 | Anthranilate/para-aminobenzoate synthases compone; | 99.64 | |
| 2ywj_A | 186 | Glutamine amidotransferase subunit PDXT; uncharact | 99.62 | |
| 3m3p_A | 250 | Glutamine amido transferase; structural genomics, | 99.62 | |
| 1gpm_A | 525 | GMP synthetase, XMP aminase; class I glutamine ami | 99.62 | |
| 1gpw_B | 201 | Amidotransferase HISH; lyase/transferase, complex | 99.61 | |
| 2ywb_A | 503 | GMP synthase [glutamine-hydrolyzing]; GMP syntheta | 99.61 | |
| 3l7n_A | 236 | Putative uncharacterized protein; glutamine amidot | 99.59 | |
| 3d54_D | 213 | Phosphoribosylformylglycinamidine synthase 1; alph | 99.59 | |
| 2vxo_A | 697 | GMP synthase [glutamine-hydrolyzing]; proto-oncoge | 99.57 | |
| 2ywd_A | 191 | Glutamine amidotransferase subunit PDXT; pyridoxin | 99.46 | |
| 1ka9_H | 200 | Imidazole glycerol phosphtate synthase; riken stru | 99.45 | |
| 1q7r_A | 219 | Predicted amidotransferase; structural genomics, Y | 99.44 | |
| 2iss_D | 208 | Glutamine amidotransferase subunit PDXT; (beta/alp | 99.43 | |
| 2nv0_A | 196 | Glutamine amidotransferase subunit PDXT; 3-layer(A | 99.42 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 99.22 | |
| 2abw_A | 227 | PDX2 protein, glutaminase; PLP-synthase, vitamin B | 99.06 | |
| 2h2w_A | 312 | Homoserine O-succinyltransferase; TM0881, (EC 2.3. | 98.56 | |
| 2vdj_A | 301 | Homoserine O-succinyltransferase; methionine biosy | 98.56 | |
| 3ugj_A | 1303 | Phosphoribosylformylglycinamidine synthase; amidot | 98.46 | |
| 3l4e_A | 206 | Uncharacterized peptidase LMO0363; hypothetical pr | 98.39 | |
| 1fy2_A | 229 | Aspartyl dipeptidase; serine protease, catalytic t | 98.36 | |
| 1oi4_A | 193 | Hypothetical protein YHBO; PFPI/THIJ family, compl | 97.61 | |
| 3l18_A | 168 | Intracellular protease I; gatase1_PFPI_LIKE, hydro | 97.1 | |
| 3qxc_A | 242 | Dethiobiotin synthetase; DTBS, structural genomics | 96.76 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 96.67 | |
| 2rk3_A | 197 | Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha | 96.3 | |
| 3of5_A | 228 | Dethiobiotin synthetase; structural genomics, cent | 96.29 | |
| 4hcj_A | 177 | THIJ/PFPI domain protein; structural genomics, PSI | 96.08 | |
| 2ab0_A | 205 | YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase | 95.89 | |
| 4e08_A | 190 | DJ-1 beta; flavodoxin-like fold, stress response, | 95.83 | |
| 3er6_A | 209 | Putative transcriptional regulator protein; struct | 95.7 | |
| 3fgn_A | 251 | Dethiobiotin synthetase; biotin biosynthesis, BIOD | 95.62 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.37 | |
| 2vrn_A | 190 | Protease I, DR1199; cysteine sulfenic acid, DJ-1/T | 95.36 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 95.22 | |
| 3efe_A | 212 | THIJ/PFPI family protein; structural GEN csgid, ce | 95.21 | |
| 2fex_A | 188 | Conserved hypothetical protein; structural genomic | 95.15 | |
| 3cne_A | 175 | Putative protease I; structural genomics, PSI-2, M | 95.14 | |
| 3l3b_A | 242 | ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, | 95.12 | |
| 3f5d_A | 206 | Protein YDEA; unknow protein, PSI-II, nysgrc, stru | 95.04 | |
| 3gra_A | 202 | Transcriptional regulator, ARAC family; transcript | 94.79 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 94.72 | |
| 2g0t_A | 350 | Conserved hypothetical protein; structural genomic | 94.66 | |
| 2xj4_A | 286 | MIPZ; replication, cell division, ATPase, WACA; 1. | 94.58 | |
| 1vhq_A | 232 | Enhancing lycopene biosynthesis protein 2; structu | 94.57 | |
| 3en0_A | 291 | Cyanophycinase; serine protease, beta peptide spec | 94.46 | |
| 1u9c_A | 224 | APC35852; structural genomics, protein structure i | 94.32 | |
| 3fse_A | 365 | Two-domain protein containing DJ-1/THIJ/PFPI-like | 94.04 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 94.0 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 93.88 | |
| 3noq_A | 231 | THIJ/PFPI family protein; DJ-1 superfamily, isocya | 93.77 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 93.63 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 93.6 | |
| 3ej6_A | 688 | Catalase-3; heme, hydrogen iron, metal-binding, ox | 93.26 | |
| 1rw7_A | 243 | YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe | 93.24 | |
| 3ttv_A | 753 | Catalase HPII; heme orientation, oxidoreductase; H | 93.23 | |
| 3n7t_A | 247 | Macrophage binding protein; seattle structural gen | 92.89 | |
| 3uk7_A | 396 | Class I glutamine amidotransferase-like domain-CO | 92.86 | |
| 3kkl_A | 244 | Probable chaperone protein HSP33; peptidase, heat | 92.64 | |
| 3mgk_A | 211 | Intracellular protease/amidase related enzyme (THI | 92.39 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 92.23 | |
| 3uk7_A | 396 | Class I glutamine amidotransferase-like domain-CO | 91.83 | |
| 3ot1_A | 208 | 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate | 91.8 | |
| 1n57_A | 291 | Chaperone HSP31, protein YEDU; alpha-beta sandwich | 91.32 | |
| 3ewn_A | 253 | THIJ/PFPI family protein; monomer, PSI nysgrc, str | 91.3 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 90.52 | |
| 2iuf_A | 688 | Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen | 90.51 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 90.44 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 90.36 | |
| 4gdh_A | 194 | DJ-1, uncharacterized protein C22E12.03C; unknown | 90.05 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 89.73 | |
| 1sy7_A | 715 | Catalase 1; heme oxidation, singlet oxygen, oxidor | 89.22 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 89.04 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 88.21 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 87.71 | |
| 3fwy_A | 314 | Light-independent protochlorophyllide reductase I | 87.43 | |
| 2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iro | 86.85 | |
| 1cp2_A | 269 | CP2, nitrogenase iron protein; oxidoreductase; 1.9 | 86.51 | |
| 3zq6_A | 324 | Putative arsenical pump-driving ATPase; tail-ancho | 85.98 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 84.68 | |
| 1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-lig | 84.29 | |
| 3ug7_A | 349 | Arsenical pump-driving ATPase; tail-anchored, memb | 82.91 | |
| 2obn_A | 349 | Hypothetical protein; structural genomics, joint c | 82.31 | |
| 3pg5_A | 361 | Uncharacterized protein; structural genomics, PSI- | 82.2 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 81.49 | |
| 1z0s_A | 278 | Probable inorganic polyphosphate/ATP-NAD kinase; A | 81.43 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 81.41 | |
| 3bhn_A | 236 | THIJ/PFPI domain protein; structural genomics, joi | 80.84 |
| >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-193 Score=1544.31 Aligned_cols=504 Identities=46% Similarity=0.808 Sum_probs=485.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+|||||||+|||||+|||+|||+|++||||||||||||||||||||||||||||+||||||||||||||+
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnvd~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 82 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINVDAGTMNPYMHGEVFVTEDGAETDLDLGHYERFMDV 82 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSSSSTTCCHHHHCCCEECTTCCEECTHHHHHHHHHCC
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceeecCCCCCccccceEEEecCCccccccccchhhhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+|||+||+||||||++||+|||||||||||||||||||||||+||+++|+ ..+|||||||||||||||||+|||
T Consensus 83 ~l~~~~n~ttg~iy~~vi~ker~g~ylg~tvqviphit~eik~~i~~~~~------~~~~dv~i~eiggtvgdies~pf~ 156 (535)
T 3nva_A 83 NMTKYNNITAGKVYFEVIKKEREGKYLGQTVQIIPHVTDQIKDMIRYASK------INNAEITLVEIGGTVGDIESLPFL 156 (535)
T ss_dssp CCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHH------HHTCSEEEEEECSCTTSGGGHHHH
T ss_pred CcccccCcchhHHHHHHHHHHhcCCcCCCeeEECCCchHHHHHHHHHhhc------cCCCCEEEEEeCCccchhcccHHH
Confidence 99999999999999999999999999999999999999999999999995 468999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||+++|++|+|||||||||||+++||+||||||||||+|||.|||||+|||||++++++++|+||||||||++++
T Consensus 157 ea~rq~~~~~g~~n~~~ih~tlvp~~~~~ge~ktkptqhsv~~Lrs~GIqPdilvcRs~~~l~~~~r~KiaLfc~V~~~~ 236 (535)
T 3nva_A 157 EAVRQLKLEEGEDNVIFVHIALVEYLSVTGELKTKPLQHSVQELRRIGIQPDFIVGRATLPLDDETRRKIALFTNVKVDH 236 (535)
T ss_dssp HHHHHHHHHHCTTTEEEEEEEECCBCTTTSSBCCHHHHHHHHHHHHHTCCCSEEEEEESSCCCHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHhCCCCEEEEEeeccceecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHhhhhhcCCChhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhc--CCCCCeEEEEEeccCCCcchHHHHHH
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICD--GLHEPVRIAMVGKYTGLSDAYLSILK 318 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~--~~~~~v~IaiVGkY~~~~day~SI~~ 318 (524)
||+++|+||||++|++||+||+++.++++|+|+ .+.++|++|+++++++. ++.++++||+||||+++.|+|.|+.+
T Consensus 237 VI~i~DvdtiY~vpl~L~~qGl~~~~~~~l~l~--~~~~~~~~w~~~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~e 314 (535)
T 3nva_A 237 IVSSYDVETSYEVPIILESQKLVSKILSRLKLE--DRQVDLTDWISFVNNIKGINSKKTINIALVGKYTKLKDSYISIKE 314 (535)
T ss_dssp EEEEECCSCGGGHHHHHHHHTHHHHHHHHTTCC--CCCCCCHHHHHHHHHHHTTTCCCEEEEEEEESCTTSGGGGHHHHH
T ss_pred eEecCCCChHHHhHHHHHHCCcHHHHHHHcCCC--CCCCCHHHHHHHHHHhhccCCCCeeEEEEEecCcCCchhHHHHHH
Confidence 999999999999999999999999999999997 36678999999999998 78889999999999999999999999
Q ss_pred HHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEh
Q 009814 319 ALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (524)
Q Consensus 319 aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGIC 398 (524)
||+|+|+++.+++++.||++++++..+. ++|+.+.++|||++|||||+++.+|+++++++|+++++|+||||
T Consensus 315 AL~hag~~~~~~V~I~wIds~~l~~~~~--------~~~~~L~~~DgIIlpGG~G~~~~~g~i~~ir~a~~~~~PiLGIC 386 (535)
T 3nva_A 315 AIYHASAYIGVRPKLIWIESTDLESDTK--------NLNEILGNVNGIIVLPGFGSRGAEGKIKAIKYAREHNIPFLGIC 386 (535)
T ss_dssp HHHHHHHHTTCEEEEEEEEGGGGCCSSS--------CCTTTTTSCSEEEECCCCSSTTHHHHHHHHHHHHHHTCCEEEET
T ss_pred HHHHHHHHcCCCeEEEEecchhcccccc--------chhhhccCCCEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEEC
Confidence 9999999999999999999998865432 12467899999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCC-cCCCCCcccccceeeEeccCCcccccccCCcceeeeee
Q 009814 399 LGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERH 477 (524)
Q Consensus 399 LGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~-~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erh 477 (524)
+|||+|++||||+++|+++|+|+||++.+++|++++|+++. ..++|||||||+|+|.+.++ |+++++|| +..|+|||
T Consensus 387 lG~Qll~va~Gg~v~g~qda~s~Ef~~~~~~pvI~~m~eq~~~~~~ggtmrlg~h~v~l~~g-S~L~~iyG-~~~I~erH 464 (535)
T 3nva_A 387 FGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKIILKEG-TIAYQLYG-KKVVYERH 464 (535)
T ss_dssp HHHHHHHHHHHHTTTCCTTCEETTTCTTCSCEEEECBCSSSCBCSSCCCCEEEEEEEEECTT-SHHHHHHT-SSEEEEEE
T ss_pred cchhHHHHHhhccccCccCCcccccCCCCCCCeeecchhcccccccCCccccCceEEEEcCC-CcHHHHhC-CCeeeecc
Confidence 99999999999999999999999999999999999999865 57899999999999999999 99999996 77899999
Q ss_pred ccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcE-EEEec
Q 009814 478 RHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIA-VLLNY 523 (524)
Q Consensus 478 rHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~-f~vqy 523 (524)
||||+||+.+.+.+++.||+++|+++|| +||+||+++||| +.|||
T Consensus 465 rHryeVNs~h~q~l~~~GL~vsA~s~DG-~IEAIE~~~~pf~vGVQf 510 (535)
T 3nva_A 465 RHRYEVNPKYVDILEDAGLVVSGISENG-LVEIIELPSNKFFVATQA 510 (535)
T ss_dssp EECCEECHHHHHHHHHTTCEEEEECTTC-CEEEEECTTSSCEEEESS
T ss_pred cccceechHHHhhcccCCeEEEEEeCCC-CEEEEEeCCCCcEEEEEe
Confidence 9999999999999988999999999999 699999999995 89998
|
| >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-159 Score=1298.07 Aligned_cols=503 Identities=49% Similarity=0.822 Sum_probs=472.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+||+|||+++||||+||+++||+|+++|+||||||||||||||||||||||+||+|+||||||||||+++
T Consensus 12 ~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e~~~~~g~~~~~~~~ 91 (550)
T 1vco_A 12 RKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYERFLDM 91 (550)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSSGGGSCSSTTSCCEECTTCCEECTHHHHHHHHHTS
T ss_pred eeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccccccCccccCcccCCceEECCCCceehhhhccHHhcCCc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
.|+++||+||||||++||+|||+|||||+|||||||||||||+||+++++ ..++||||||+||||||||||||+
T Consensus 92 ~l~~~~~~~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~------~~~~d~~i~e~~gt~~di~~~~~~ 165 (550)
T 1vco_A 92 DLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVAE------EQKAEIVVVEVGGTVGDIESLPFL 165 (550)
T ss_dssp CCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCTTTHHHHHHHHHHHHHHH------HTTCSEEEEEECSCTTSSTTHHHH
T ss_pred ccCCCCCeeccEEchhhhhhhcccccccCceEEhhHHHHHHHHHHHHHhc------ccCCCEEEEECCCChhHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999984 457999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||+++|++|+|||||||||||+++||+|||||||||++|||.|||||++|||++++++++||+|+||||||++++
T Consensus 166 ~~~rq~~~~~~~~~~~~~h~~~~p~~~~~~e~ktkptq~sv~~lrs~gi~pd~lvvR~~~~~~~~~r~k~sL~~~v~~~~ 245 (550)
T 1vco_A 166 EAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGH 245 (550)
T ss_dssp HHHHTHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHHTTCCCSEEEEEESSCCCHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHhHhhCcCCEEEEEEeCeecccCCCCcCCCCcchhHHHHhcCCCccCEEEEeCCCCCCcchhcccchhcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHH
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL 320 (524)
||++.|+||||+||++||+||++++++++++++ ...++++.|.+++.++.++..+++|+++|||..+.|+|.|+.++|
T Consensus 246 Vi~~~dvdt~y~lp~~lr~~G~~~~v~~~~~l~--~~~~~l~~w~~~~~~~~~~~~~v~I~ivgkyv~l~D~y~Sv~~aL 323 (550)
T 1vco_A 246 VFSSPTVEHLYEVPLLLEEQGLGRAVERALGLE--AVIPNLSFWQEAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEAL 323 (550)
T ss_dssp EEEEECCSCTTHHHHHHHHHTHHHHHHHHTTCC--CCCCCCHHHHHHHHHHHSCSEEEEEEEEESCC---CTTHHHHHHH
T ss_pred eeecCCCChHHHHHHHHHHcCChhhhHhhCCCC--chhHHHHHhHHHHHhhcCCCCceEEcccCCeEEEEecHHHHHHHH
Confidence 999999999999999999999999999999986 355688899999999998888899999999999999999999999
Q ss_pred HHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHh
Q 009814 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (524)
Q Consensus 321 ~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLG 400 (524)
.+++.+.++++++.|++++++++++ +++.+.++||||||||||+|+.+|+++++++|+++++|+||||||
T Consensus 324 ~~~g~~~g~~v~I~~~d~~~~~~~~----------~~~~L~~~DGIILpGGfGd~~~~g~i~~ir~a~e~~iPiLGICLG 393 (550)
T 1vco_A 324 RHAGIKNRARVEVKWVDAESLEAAD----------LEEAFRDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLG 393 (550)
T ss_dssp HHHHHHTTEEEEEEEEEGGGC--CC----------HHHHTTTCSCEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHH
T ss_pred HHHHHHcCCeEEEEEeCccccccch----------HHHHHhcCCEEEECCCCCCcchhhhHHHHHHHHHCCCcEEEECcC
Confidence 9999999999999999987664322 245678999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCC-CcCCCCCcccccceeeEeccCCcccccccCCcceeeeeecc
Q 009814 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479 (524)
Q Consensus 401 mQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~-~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrH 479 (524)
||+|+++||++++++++++|+||+++++||++.+++++ +++|+|++||+|.++|.+.++ |++.++|+ +..|.+||||
T Consensus 394 mQlL~~a~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~~-s~l~~iy~-~~~v~e~h~H 471 (550)
T 1vco_A 394 LQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPG-TLLHRLYG-KEEVLERHRH 471 (550)
T ss_dssp HHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECTT-SHHHHHHC-CSEEEEEEEE
T ss_pred HHHHHHHhCcccccCCccccccccCCCCCCeEEeccccccccccCCcccccceEEEEccC-chhhHhcC-Cceeeeeccc
Confidence 99999999999999999999999999999999999864 578999999999999999988 99999996 6778899999
Q ss_pred ccccChhhHHhhhcCCeEEEEEeCC-----CCeEEEEEECCCcEE-EEec
Q 009814 480 RYEVNPDMIARLENAGLSFTGKDET-----SQRMEVWTFNYKIAV-LLNY 523 (524)
Q Consensus 480 rYeVn~~~v~~l~~~Gl~~sg~~~d-----g~~VE~iE~~~hp~f-~vqy 523 (524)
+|+||+.+.+.+++.|++++|+++| +.++|+||+++|||| +|||
T Consensus 472 ~Y~Vns~~~~~l~~~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQF 521 (550)
T 1vco_A 472 RYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQS 521 (550)
T ss_dssp SEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESS
T ss_pred eEEEchHHhhccccCCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEe
Confidence 9999999988886679999999999 558999999999999 9998
|
| >1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-158 Score=1282.32 Aligned_cols=500 Identities=48% Similarity=0.798 Sum_probs=469.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+||+|||+++||||+||+++||+|+++|+|||||||||||||+||||||||+||+|+||||||||||+|+
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e~~~~~~~~~~~~~~ 82 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRT 82 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSCGGGSCTTTSCCCEECTTSCEECTHHHHHHHHCSS
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccCCCCccCcccCCCeEECCCCCeehhhhccceeeece
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
.|+++||+|+||||++||+|||+|+|+|+|||++||||||||+||+++++ ++||||||+||||||||||||+
T Consensus 83 ~l~~~~~~~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~--------~~d~~i~e~~gt~~di~~~~~~ 154 (545)
T 1s1m_A 83 KMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGE--------GHDVVLVEIGGTVGDIESLPFL 154 (545)
T ss_dssp CCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHT--------TCSEEEEEECSCTTSSTTHHHH
T ss_pred eecCCCCeeccEEeeehhhhccccccccCceeehhHHHHHHHHHHHHHhc--------cCCEEEEECCCChhhhhChHHH
Confidence 99999999999999999999999999999999999999999999999983 7899999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||+++|++|+|||||||||||+++||+|||||||||++|||.|||||+||||++++++++||+|+||||||++++
T Consensus 155 ~~~~q~~~~~~~~~~~~~h~~~~p~~~~~ge~ktkptq~sv~~l~s~gi~pd~lv~R~~~~~~~~~r~kisL~~~v~~~~ 234 (545)
T 1s1m_A 155 EAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKA 234 (545)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHTTTCCCSEEEEEESSCCCHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHhHhhCcCcEEEEEEeCcccccCCCCcCCCCCcCCHHHHhCCCCccCEEEEeCCCCCCchhhccCChhhCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCCCCCChhhHHHHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHH
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL 320 (524)
||+++|+||||+||++||+||++++++++++++ ...+++++|++++++++++...++||++|||..+.|+|.|+.++|
T Consensus 235 Vi~~~dvdt~y~lp~~lr~~G~~~~ii~~~~l~--~~~~~l~~w~~lv~~v~~~~~~v~i~~vGkyv~l~D~y~Si~~aL 312 (545)
T 1s1m_A 235 VISLKDVDSIYKIPGLLKSQGLDDYICKRFSLN--CPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEAL 312 (545)
T ss_dssp EEEEECCSCGGGHHHHHHHTTHHHHHHHHTTCC--CCCCCCHHHHHHHHHHHCCSEEEEEEEEESSCSSGGGGHHHHHHH
T ss_pred ceecCCCChHHHHHHHHHHcCChhhhhhhCCCC--chhHHHHHHHHHHHhccCCCCeEEeCCcCCeEEEEEHHHHHHHHH
Confidence 999999999999999999999999999999986 345688999999999999888899999999999999999999999
Q ss_pred HHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHh
Q 009814 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (524)
Q Consensus 321 ~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLG 400 (524)
+++|+++++++.+.|+++++++.+ +++.+.++||||||||||+|+.+++++++++++++++|+||||||
T Consensus 313 ~~~G~~~~~~V~i~~~d~e~i~~~-----------~~~~l~~~DGIilsGGpg~~~~~g~~~~i~~a~~~~~PiLGIClG 381 (545)
T 1s1m_A 313 KHGGLKNRVSVNIKLIDSQDVETR-----------GVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLG 381 (545)
T ss_dssp HHHHHHHTEEEEEEEEEHHHHHHH-----------CTTTTTTCSEEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHH
T ss_pred HHhCcccCCeEEEccCCHHHhhhh-----------hhhhhhcCCEEEECCCCCCccchhhHHHHHHHHHCCCcEEEECCh
Confidence 999999888889999987654310 113467899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCcccCCCCCCCeeeeC----------CCC-CcCCCCCcccccceeeEeccCCcccccccCC
Q 009814 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFM----------PEG-SKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN 469 (524)
Q Consensus 401 mQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~----------~e~-~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~ 469 (524)
||+|++||||+++++++++|+||+++++||++.++ +++ ...++|||||+|.++|.+.++ |++.++|+
T Consensus 382 ~Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~~-s~l~~iyg- 459 (545)
T 1s1m_A 382 MQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDD-SLVRQLYN- 459 (545)
T ss_dssp HHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECTT-CHHHHHTT-
T ss_pred HHHHHHHhCCceecCCCCcccccCCCCCCceEEeecccccccccccccccccccCccccccceeeEeccC-CHHHHhcC-
Confidence 99999999999999999999999999999999988 432 346889999999999999998 99999996
Q ss_pred cceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEE-EEec
Q 009814 470 RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAV-LLNY 523 (524)
Q Consensus 470 ~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f-~vqy 523 (524)
+..|.+||||||+||+.+.+.+++.|++++|+++||.++|++|+++|||| +|||
T Consensus 460 ~~~v~e~h~Hry~VNs~~~~~l~~~gl~v~a~s~dg~~VEaie~~~~p~flGVQF 514 (545)
T 1s1m_A 460 APTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQF 514 (545)
T ss_dssp SSEEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESS
T ss_pred CceEEEecCcceEEChHHhhhcccCCeEEEEECCCCCceEEEEeCCCCEEEEEeC
Confidence 67788999999999999999887789999999999978999999999999 9998
|
| >2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-144 Score=1063.42 Aligned_cols=273 Identities=66% Similarity=1.114 Sum_probs=231.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+|||||||+|||||+|||+|||+|+++|||||||||||||||||||||||||||+||||||||||||||+
T Consensus 23 ~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD~GTMsP~qHGEVfVtdDG~EtDLDLGhYERFl~~ 102 (295)
T 2vo1_A 23 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGEVDLDLGNYERFLDI 102 (295)
T ss_dssp CEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC----------------------------------
T ss_pred ceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceecCCCCCChhhhceEEeecccccccccccchHhhccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+|+++||+||||||++||+|||||||||||||||||||||||+||+++|.+|+|+++.+|||||||||||||||||+|||
T Consensus 103 ~l~~~~niTtGkiY~~Vi~kERrGdYLG~TVQvIPHiTdeIk~~I~~~a~~~~~~~~~~~Dv~IvEiGGTVGDIEs~PFl 182 (295)
T 2vo1_A 103 RLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFI 182 (295)
T ss_dssp -----CEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHSCCSSSCCCCSEEEEEECSCTTCGGGHHHH
T ss_pred CcCccccccHHHHHHHHHHHHHcCCCCCCeEEecCChhhHHHHHHHHhhcccccccCCCCCEEEEEcCceeccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||+++|++|+||||||||||++++||+||||||||||+|||+|||||+|||||+.|++++.|+||||||+|++++
T Consensus 183 EAiRQ~~~~~g~~n~~~iHvtlvP~l~~~gE~KTKPTQhSVkeLr~~GIqPDiivcRse~pl~~~~k~KIAlFCnV~~~~ 262 (295)
T 2vo1_A 183 EAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ 262 (295)
T ss_dssp HHHHHHHHHSCGGGEEEEEEEECCCCCC-CCCCCHHHHHHHHHHHHHTCCCSEEEEECSSCCCHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHhhcccceeEEEeeccccccccccccccchHhHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCC
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQ 273 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~ 273 (524)
||+++|++|||+||++|++||+++.++++|+|+
T Consensus 263 VI~~~Dv~sIYeVPl~L~~qgl~~~i~~~L~LP 295 (295)
T 2vo1_A 263 VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLP 295 (295)
T ss_dssp EEEECCCSSGGGHHHHHHHTTHHHHHHHHHTCC
T ss_pred EEEcCCcCcHHHHHHHHHHCCchHHHHHHcCCC
Confidence 999999999999999999999999999999985
|
| >2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=337.84 Aligned_cols=240 Identities=48% Similarity=0.774 Sum_probs=200.7
Q ss_pred HHHHHHHhhcCCCCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccC
Q 009814 283 EWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKG 362 (524)
Q Consensus 283 ~W~~lv~~~~~~~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~ 362 (524)
-|+.+++++.++..+++|+++|+|.+..++|.|+.++|+++|+.+...+.+.|+++++++......+++.|+++|+.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (289)
T 2v4u_A 11 VDLGTENLYFQSMKICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCK 90 (289)
T ss_dssp ------------CEEEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCCceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhh
Confidence 59999999998877899999999976888899999999999999888889999998766432222356668888888889
Q ss_pred CCEEEECCCCCCCchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCC
Q 009814 363 ADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTH 442 (524)
Q Consensus 363 ~DGIllpGGfG~rg~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~ 442 (524)
+||||||||||++...+.++++++++++++|+||||+|||+|+.++|++++|++++++.|++++.++|++.+|++....+
T Consensus 91 ~dgiil~GG~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~~~ 170 (289)
T 2v4u_A 91 ADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPGN 170 (289)
T ss_dssp CSEEEECSCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBCCTTC
T ss_pred CCEEEecCCCCchhHHHHHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhhcccc
Confidence 99999999999988889999999999999999999999999999999999999999999999888899999998765556
Q ss_pred CCCcccccceeeEec-cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEE-E
Q 009814 443 MGGTMRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAV-L 520 (524)
Q Consensus 443 ~GgtmrLg~~~v~l~-~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f-~ 520 (524)
+|++||+|.+++.+. ++ +.+.++|+....|+++|+|||+||++++..+.+.|++++|+++|+.++|++|++++||+ .
T Consensus 171 ~~~~~~~g~~~v~~~~~~-s~l~~~~~~~~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~~~p~~lG 249 (289)
T 2v4u_A 171 LGGTMRLGIRRTVFKTEN-SILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVG 249 (289)
T ss_dssp SSCBCEEEEEEEEESCSC-CHHHHHTTSCSEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEESSSSCEEE
T ss_pred cCCccccceEEEEEecCC-CHHHHhcCCCceEEEecccccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcCCCCeEEE
Confidence 789999999999997 67 88999996335788999999999999998885579999999988856999999999987 9
Q ss_pred Eec
Q 009814 521 LNY 523 (524)
Q Consensus 521 vqy 523 (524)
|||
T Consensus 250 vQf 252 (289)
T 2v4u_A 250 VQF 252 (289)
T ss_dssp ESS
T ss_pred EEC
Confidence 998
|
| >2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=309.82 Aligned_cols=218 Identities=41% Similarity=0.662 Sum_probs=185.9
Q ss_pred CeEEEEEecc-CCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 297 PVRIAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 297 ~v~IaiVGkY-~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
+++|||+||| ..+.|+|.|+.++|++++.++.+++.+.|+++++++..+ . ..+++.+.++||||||||||++
T Consensus 8 ~~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~----~---~~~~~~~~~~dgiil~GG~~~~ 80 (273)
T 2w7t_A 8 TVRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPN----A---DEARKALLGCDGIFVPGGFGNR 80 (273)
T ss_dssp CEEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTT----T---HHHHHHHHTCSEEEECCCCTTT
T ss_pred CCEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhccccc----c---hhHHHHHhhCCEEEecCCCCCc
Confidence 3899999999 577899999999999999999888999999987654311 0 0022457789999999999999
Q ss_pred chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 376 g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
..++.+.++++++++++|+||||+|||+|+++||+++.++++++|+|+++++++|++.+++ .....++++|++|.+++.
T Consensus 81 ~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~-~~~~~~~~~~~~g~~~v~ 159 (273)
T 2w7t_A 81 GVDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMD-CDRNKMGANMHLGACDVY 159 (273)
T ss_dssp THHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCG-GGBCSSCBCCEEEEEEEE
T ss_pred CchhHHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeecc-ccccccCCcccccceEEE
Confidence 8889999999999999999999999999999999999999999999998888889887773 333445678899999999
Q ss_pred ec-cCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCC----CCeEEEEEECCCcEE-EEec
Q 009814 456 FQ-IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET----SQRMEVWTFNYKIAV-LLNY 523 (524)
Q Consensus 456 l~-~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~d----g~~VE~iE~~~hp~f-~vqy 523 (524)
+. ++ +.+.++|+....++++|+|||+||+++++.++..|++++|+++| +..+|+||+++|||+ .|||
T Consensus 160 ~~~~~-s~l~~~~~~~~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQf 232 (273)
T 2w7t_A 160 IVEKS-SIMAKIYSKSNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQF 232 (273)
T ss_dssp ECCTT-SHHHHHTTTCSEEEEEEEECCEECGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESS
T ss_pred EecCC-cHHHHHhCCCceEEeecccccccCHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeC
Confidence 86 46 77888986456788999999999999988774568999999998 447999999999976 9998
|
| >1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=317.59 Aligned_cols=270 Identities=20% Similarity=0.240 Sum_probs=198.9
Q ss_pred EEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHHH
Q 009814 178 IHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLL 257 (524)
Q Consensus 178 ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~L 257 (524)
|-+.--|.++..|=-+ .+.||.+|++.++|||+.++.+||||++.||..||++++|++|.+|||| +|+++|
T Consensus 51 i~~~t~P~iGn~Gv~~--------~d~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR-~lt~~i 121 (379)
T 1a9x_B 51 IVTLTYPHIGNVGTND--------ADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTR-KLTRLL 121 (379)
T ss_dssp EEEECSSBCCTTCCCG--------GGCSSSSCCBSEEECSBCCSCCCCTTCCSCHHHHHHHTTCEEEESSCHH-HHHHHH
T ss_pred eeEEcCCCccEEccCc--------hhhccccceEEEEEEccCCCCCCcccccCCHHHHHHHCCCccccCCCHH-HHHHHH
Confidence 3333456676555422 3689999999999999999999999999999999999999999999999 999999
Q ss_pred HHhhhHHHHHhhc-CCCCCCChhhHHHHH-----HHHHhhcCC-------CC----------------CeEEEEEeccCC
Q 009814 258 RDQKAHEAIFKVL-NLQGTTKEPLLKEWT-----SRAEICDGL-------HE----------------PVRIAMVGKYTG 308 (524)
Q Consensus 258 reqG~~~~i~~~l-~l~~~~~~~~l~~W~-----~lv~~~~~~-------~~----------------~v~IaiVGkY~~ 308 (524)
|++|+|+++|..- ..+.......+..|. ++++.+... .. ..+|+++ +|+
T Consensus 122 R~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vi-D~G- 199 (379)
T 1a9x_B 122 REKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPQAKKEDELPFHVVAY-DFG- 199 (379)
T ss_dssp HHHCCEEEEEEESSSCCHHHHHHHHHHCCCSTTCBCHHHHSCSSCEEECCCCCBTTTBSCCCCCGGGCCEEEEEE-ESS-
T ss_pred HhcCCeeEEEecCCCCCHHHHHHHHHhCCCccccCccceeCCCCCEEeCCCCcccccccccccccccCCCEEEEE-ECC-
Confidence 9999999988652 111000011233342 355555431 11 3689999 586
Q ss_pred CcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHh-ccCCCEEEECCCCCCCc-hhHHHHHHHH
Q 009814 309 LSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRG-VQGKILAAKY 386 (524)
Q Consensus 309 ~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~-l~~~DGIllpGGfG~rg-~eg~i~air~ 386 (524)
...|+.++|+.+|+.+.+. +.+. + +.+. ..++||||||||||++. ....++.++.
T Consensus 200 ---~k~ni~r~L~~~G~~v~vv------p~~~--------~------~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~ 256 (379)
T 1a9x_B 200 ---AKRNILRMLVDRGCRLTIV------PAQT--------S------AEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQK 256 (379)
T ss_dssp ---CCHHHHHHHHHTTEEEEEE------ETTC--------C------HHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHH
T ss_pred ---ChHHHHHHHHHCCCEEEEE------eccC--------C------HHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHH
Confidence 5588999999999877654 3221 0 0122 24799999999999984 4688899999
Q ss_pred HHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEeccCCcccccc
Q 009814 387 AREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKL 466 (524)
Q Consensus 387 are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~i 466 (524)
+++.++|+||||||||+|+.++|+++.+++..|+ |++ +++...+. .++
T Consensus 257 ~~~~~~PILGIClG~QLLa~A~GG~v~k~~~gh~-----------------------g~n-----~pv~~~~~----g~v 304 (379)
T 1a9x_B 257 FLETDIPVFGICLGHQLLALASGAKTVKMKFGHH-----------------------GGN-----HPVKDVEK----NVV 304 (379)
T ss_dssp HTTSCCCEEEETHHHHHHHHHTTCCEEEEEEEEE-----------------------EEE-----EEEEETTT----TEE
T ss_pred HHHcCCCEEEECchHHHHHHHhCcEEEecccccc-----------------------cCc-----eeeEecCC----CcE
Confidence 9999999999999999999999999987654322 222 33331111 122
Q ss_pred cCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 467 YGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 467 Yg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.++ .|+|+|+|+++.+ ..++++++.+.++..+|+++++++|+|+|||
T Consensus 305 -----~it-s~~H~~aV~~~~L----p~~~~v~a~s~~Dg~ieai~~~~~pi~gVQF 351 (379)
T 1a9x_B 305 -----MIT-AQNHGFAVDEATL----PANLRVTHKSLFDGTLQGIHRTDKPAFSFQG 351 (379)
T ss_dssp -----EEE-EEEEEEEECSTTC----CTTEEEEEEETTTCCEEEEEESSSSEEEESS
T ss_pred -----EEE-ecCccceEecccC----CCCeEEEEEeCCCCcEEEEEECCCCEEEEEe
Confidence 244 4889999987533 3479999999655569999999999999998
|
| >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-20 Score=181.30 Aligned_cols=183 Identities=17% Similarity=0.204 Sum_probs=125.0
Q ss_pred CeEEEEEeccCCC----------cchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEE
Q 009814 297 PVRIAMVGKYTGL----------SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGI 366 (524)
Q Consensus 297 ~v~IaiVGkY~~~----------~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGI 366 (524)
++.|+|...+... .-.+.+.+++|+.+|+.+.+. +...-. +..+.+.++|||
T Consensus 4 ~p~IGi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~pv~l------p~~~~~------------~~~~~l~~~DGl 65 (254)
T 3fij_A 4 KPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIAL------PIDDPS------------TAVQAISLVDGL 65 (254)
T ss_dssp CCEEEEEC------------------CHHHHHHHHHHTCEEEEE------CCCCGG------------GHHHHHHTCSEE
T ss_pred CCEEEEeCCcccccccccCCcchhhhhHHHHHHHHHCCCEEEEE------eCCCch------------HHHHHHhhCCEE
Confidence 4678998753211 012356789999999876653 321100 012457789999
Q ss_pred EECCCCC-CCc-----------------hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCC
Q 009814 367 LVPGGFG-NRG-----------------VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTK 428 (524)
Q Consensus 367 llpGGfG-~rg-----------------~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~ 428 (524)
|||||++ +|. ...+++++++|+++++|+||||+|||+|++++|+++.+ +..+. .
T Consensus 66 il~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Qll~~a~Gg~v~~--~~~~~-~----- 137 (254)
T 3fij_A 66 LLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQ--DISQV-E----- 137 (254)
T ss_dssp EECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHTTCCEES--SGGGS-S-----
T ss_pred EECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCceec--ccccc-c-----
Confidence 9999976 221 13478999999999999999999999999999999854 22221 0
Q ss_pred CCeeeeCCCCCcCCCC-CcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCe
Q 009814 429 NPCVIFMPEGSKTHMG-GTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQR 507 (524)
Q Consensus 429 ~pVi~l~~e~~~~~~G-gtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~ 507 (524)
.+.+ .|+. ..+++|.+++.+.++ +.+.+.|+....+++ .|++.|+ .+ ..|+++++.++|+.
T Consensus 138 ~~~~--------~h~~~~~~~~g~~~v~~~~~-s~l~~~~~~~~~v~~--~H~~~v~-----~l-~~g~~v~a~s~dg~- 199 (254)
T 3fij_A 138 TKAL--------QHLQRVDEQLGSHTIDIEPT-SELAKHHPNKKLVNS--LHHQFIK-----KL-APSFKVTARTADGM- 199 (254)
T ss_dssp SCCC--------CCBCCSCTTSCCEEEEECTT-SSGGGTCCTTEEECC--BCSCEES-----SC-CSSEEEEEEETTCC-
T ss_pred Cccc--------cccCCCCCccceEEEEeCCC-ChHHHhcCCcEEEEE--eccchhh-----cc-CCCcEEEEEeCCCc-
Confidence 1111 1111 235678889999888 888888864334554 3666664 23 56899999999885
Q ss_pred EEEEEEC-CCc-EEEEec
Q 009814 508 MEVWTFN-YKI-AVLLNY 523 (524)
Q Consensus 508 VE~iE~~-~hp-~f~vqy 523 (524)
+|++|++ ++| ++.|||
T Consensus 200 ieai~~~~~~~~~~gvQf 217 (254)
T 3fij_A 200 IEAVEGDNLPSWYLGVQW 217 (254)
T ss_dssp EEEEEESSCSSCEEEESS
T ss_pred EEEEEecCCCCeEEEEEc
Confidence 9999999 999 999998
|
| >4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-19 Score=171.15 Aligned_cols=176 Identities=14% Similarity=0.119 Sum_probs=109.2
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCchh
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~e 378 (524)
+|+|+ ||+ .+ +..||.+||+++|+++.+. .+| +.+.++||||+|| +|+++..
T Consensus 4 ~I~ii-D~g-~~-n~~si~~al~~~G~~~~v~-----------------~~~-------~~l~~~D~lilPG-~g~~~~~ 55 (211)
T 4gud_A 4 NVVII-DTG-CA-NISSVKFAIERLGYAVTIS-----------------RDP-------QVVLAADKLFLPG-VGTASEA 55 (211)
T ss_dssp CEEEE-CCC-CT-THHHHHHHHHHTTCCEEEE-----------------CCH-------HHHHHCSEEEECC-CSCHHHH
T ss_pred EEEEE-ECC-CC-hHHHHHHHHHHCCCEEEEE-----------------CCH-------HHHhCCCEEEECC-CCCHHHH
Confidence 69999 698 33 6789999999999987753 112 4677899999996 4554221
Q ss_pred ----HHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCC-CCcCCCCCccccccee
Q 009814 379 ----GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPE-GSKTHMGGTMRLGSRR 453 (524)
Q Consensus 379 ----g~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e-~~~~~~GgtmrLg~~~ 453 (524)
.....++.+++.++|+||||+|||+|+.++++++......... -...+.+|..+... ....+++++ .
T Consensus 56 ~~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~~g~~~~~~~~~~~g--l~~~~~~v~~~~~~~~~~~~~~~~------~ 127 (211)
T 4gud_A 56 MKNLTERDLIELVKRVEKPLLGICLGMQLLGKLSEEKGQKADEIVQC--LGLVDGEVRLLQTGDLPLPHMGWN------T 127 (211)
T ss_dssp HHHHHHTTCHHHHHHCCSCEEEETHHHHTTSSEECCC----CCCEEC--CCSSSCEEEECCCTTSCSSEEEEE------C
T ss_pred HHHHHhcChHHHHHHcCCCEEEEchhHhHHHHHhCCcccccCCcccc--ceeccceEEEcccCCcceeeccce------e
Confidence 1223467788899999999999999999999988654332221 11234455554322 223444433 2
Q ss_pred eEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 454 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 454 v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.....+++...+. ....+ .+.|+|.+.+ +..+.+.+.+|. .+++.+.+.|++.|||
T Consensus 128 ~~~~~~~~l~~~l~-~~~~~--~~~H~~~v~~---------~~~~~a~~~~g~-~~~~~v~~~~v~GvQF 184 (211)
T 4gud_A 128 VQVKEGHPLFNGIE-PDAYF--YFVHSFAMPV---------GDYTIAQCEYGQ-PFSAAIQAGNYYGVQF 184 (211)
T ss_dssp CEECTTCGGGTTCC-TTCCE--EEEESEECCC---------CTTEEEEEESSS-EEEEEEEETTEEEESS
T ss_pred eeeeccChhhcCCC-CCcEE--EEEeeEEeCC---------CCeEEEEecCCC-eEEEEEeCCCEEEEEc
Confidence 22223312222222 12223 4678888753 334567777776 6777777889999998
|
| >1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=162.62 Aligned_cols=162 Identities=15% Similarity=0.191 Sum_probs=109.6
Q ss_pred EEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhcc--CCCEEEECCCCCCCch
Q 009814 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRGV 377 (524)
Q Consensus 300 IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~--~~DGIllpGGfG~rg~ 377 (524)
|++++.+.+. ..++.++|+.+|+.+.+. +.++.. ++.+. ++|||++|||+|.+..
T Consensus 4 i~iid~~~s~---~~~~~~~l~~~G~~~~v~------~~~~~~--------------~~~~~~~~~dglil~gG~~~~~~ 60 (195)
T 1qdl_B 4 TLIIDNYDSF---VYNIAQIVGELGSYPIVI------RNDEIS--------------IKGIERIDPDRLIISPGPGTPEK 60 (195)
T ss_dssp EEEEECSCSS---HHHHHHHHHHTTCEEEEE------ETTTSC--------------HHHHHHHCCSEEEECCCSSCTTS
T ss_pred EEEEECCCch---HHHHHHHHHhCCCEEEEE------eCCCCC--------------HHHHhhCCCCEEEECCCCCChhh
Confidence 8999755533 247789999999876553 222110 12232 6999999999998743
Q ss_pred ---hH-HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCccccccee
Q 009814 378 ---QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 453 (524)
Q Consensus 378 ---eg-~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~ 453 (524)
.+ ..+.++++ +.++|+||||+|||+|+.++|+++...+.. .| |+ .++
T Consensus 61 ~~~~~~~~~~i~~~-~~~~PvLGIC~G~QlL~~~~gg~v~~~~~~----------------------~~-g~-----~~~ 111 (195)
T 1qdl_B 61 REDIGVSLDVIKYL-GKRTPILGVCLGHQAIGYAFGAKIRRARKV----------------------FH-GK-----ISN 111 (195)
T ss_dssp HHHHTTHHHHHHHH-TTTSCEEEETHHHHHHHHHTTCEEEEEEEE----------------------EE-EE-----EEE
T ss_pred hhhhhHHHHHHHHh-cCCCcEEEEehHHHHHHHHhCCEEeccCCC----------------------cC-CC-----ceE
Confidence 22 34777775 779999999999999999999998653310 11 11 122
Q ss_pred eEeccCCc--ccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEe-CCCCeEEEEEECCCcEEEEec
Q 009814 454 TYFQIKDC--KSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKD-ETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 454 v~l~~g~s--~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~-~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+.++ + .+.+.+. ..+.-.+.|+|.|. .+ ..|+++++.+ .++ .+|+++.+++|++.|||
T Consensus 112 v~~~~~-~~~~l~~~~~--~~~~v~~~H~~~v~-----~l-~~~~~vla~s~~~g-~i~a~~~~~~~~~gvQf 174 (195)
T 1qdl_B 112 IILVNN-SPLSLYYGIA--KEFKATRYHSLVVD-----EV-HRPLIVDAISAEDN-EIMAIHHEEYPIYGVQF 174 (195)
T ss_dssp EEECCS-SCCSTTTTCC--SEEEEEEEEEEEEE-----CC-CTTEEEEEEESSSC-CEEEEEESSSSEEEESS
T ss_pred EEECCC-CHhHHHhcCC--CceEEeccccchhh-----hC-CCCcEEEEEECCCC-cEEEEEeCCCCEEEEec
Confidence 333334 3 3434342 23444688999885 22 4589999999 677 59999999999999998
|
| >2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=166.05 Aligned_cols=165 Identities=19% Similarity=0.256 Sum_probs=115.1
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCC-CCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG-FGN 374 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGG-fG~ 374 (524)
..++|.+++.|.+.. .++.++|+.+|+.+.+. +.+. ++ +.+.++|||||||| |++
T Consensus 12 ~~~~i~~id~~~~~~---~~~~~~l~~~G~~~~vv------~~~~--------~~-------~~l~~~DglIl~GG~p~~ 67 (212)
T 2a9v_A 12 HMLKIYVVDNGGQWT---HREWRVLRELGVDTKIV------PNDI--------DS-------SELDGLDGLVLSGGAPNI 67 (212)
T ss_dssp CCCBEEEEEESCCTT---CHHHHHHHHTTCBCCEE------ETTS--------CG-------GGGTTCSEEEEEEECSCG
T ss_pred ccceEEEEeCCCccH---HHHHHHHHHCCCEEEEE------eCCC--------CH-------HHHhCCCEEEECCCCCCC
Confidence 457899997665432 46789999999877654 3221 01 34567999999999 888
Q ss_pred Cchh-HHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCccccccee
Q 009814 375 RGVQ-GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 453 (524)
Q Consensus 375 rg~e-g~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~ 453 (524)
+..+ ......++++++++|+||||+|||+|+.++|+++...+. ++. |.++
T Consensus 68 ~~~~~~~~~l~~~~~~~~~PiLGIC~G~Qll~~~lGg~v~~~~~-----------------------~~~------G~~~ 118 (212)
T 2a9v_A 68 DEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKH-----------------------PEF------GKTK 118 (212)
T ss_dssp GGTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHHTTCEEEEEEE-----------------------EEE------EEEE
T ss_pred CcccccchhHHHHHHhCCCCEEEEChHHHHHHHHhCCEEEcCCC-----------------------ccc------Ccee
Confidence 6321 223345667789999999999999999999998854311 112 3345
Q ss_pred eEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 454 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 454 v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+.++ +.+.+.++ . .+.-.|.|+|.|.. + ..|+++++.+.++. +|+++.+++|++.|||
T Consensus 119 v~~~~~-~~l~~~~~-~-~~~v~~~H~~~v~~-----l-~~~~~vlA~s~d~~-i~ai~~~~~~i~gvQf 178 (212)
T 2a9v_A 119 VSVMHS-ENIFGGLP-S-EITVWENHNDEIIN-----L-PDDFTLAASSATCQ-VQGFYHKTRPIYATQF 178 (212)
T ss_dssp EEESCC-CGGGTTCC-S-EEEEEEEEEEEEES-----C-CTTEEEEEECSSCS-CSEEEESSSSEEEESS
T ss_pred eEECCC-ChhHhcCC-C-ceEEEeEhhhhHhh-----C-CCCcEEEEEeCCCC-EEEEEECCCCEEEEEe
Confidence 555555 44444443 2 23336889998742 2 35899999998865 9999999999999998
|
| >1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=9.3e-18 Score=171.82 Aligned_cols=182 Identities=14% Similarity=0.096 Sum_probs=110.2
Q ss_pred CeEEEEEeccCCCc--------chHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEE
Q 009814 297 PVRIAMVGKYTGLS--------DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILV 368 (524)
Q Consensus 297 ~v~IaiVGkY~~~~--------day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIll 368 (524)
++.|+|........ -...++.++|+.+|+.+.+. +.+.+ + .+..+.+.++|||||
T Consensus 30 ~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv----~~~~~----------~---~~i~~~l~~~dglil 92 (315)
T 1l9x_A 30 KPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPV----RLDLT----------E---KDYEILFKSINGILF 92 (315)
T ss_dssp CCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEE----CSSCC----------H---HHHHHHHHHSSEEEE
T ss_pred CCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEE----ecCCC----------H---HHHHHHHhcCCEEEE
Confidence 57899997543211 01246789999999876654 22111 1 011233568999999
Q ss_pred CCCCCCC--c-h-hHHHHHHHHHHHc-----CCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCC
Q 009814 369 PGGFGNR--G-V-QGKILAAKYAREH-----RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS 439 (524)
Q Consensus 369 pGGfG~r--g-~-eg~i~air~are~-----~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~ 439 (524)
|||+++. . . +-...+++.+++. ++|+||||+|||+|++++|+++..... .+.+ .+.|+...
T Consensus 93 ~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~~---~~~g--~~~p~~~~----- 162 (315)
T 1l9x_A 93 PGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTAT---DTVD--VAMPLNFT----- 162 (315)
T ss_dssp CCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEEE---EEEE--EEECCEEC-----
T ss_pred eCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCccccccc---cccC--CCCCeeec-----
Confidence 9999874 2 1 1112344555554 699999999999999999998642111 0110 01122110
Q ss_pred cCCCCCcccccceeeEeccCCcccccccCC-------cceeeeeeccccccChhhHHh--hhcCCeEEEEEeCCCCeEEE
Q 009814 440 KTHMGGTMRLGSRRTYFQIKDCKSAKLYGN-------RTFIDERHRHRYEVNPDMIAR--LENAGLSFTGKDETSQRMEV 510 (524)
Q Consensus 440 ~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~-------~~~I~erhrHrYeVn~~~v~~--l~~~Gl~~sg~~~dg~~VE~ 510 (524)
...++ +.+.+.+.. +..+.. ++|+|+|++++++. ....|++++|+++|+. +|+
T Consensus 163 ---------------~~~~~-s~L~~~~~~~~~~~l~~~~~~~-~~H~~~V~~~~~~~~~~l~~g~~v~A~s~dg~-ve~ 224 (315)
T 1l9x_A 163 ---------------GGQLH-SRMFQNFPTELLLSLAVEPLTA-NFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGK-IEF 224 (315)
T ss_dssp ---------------STTTT-CSTTTTSCHHHHHHHHHSCCEE-EEEEEECBHHHHHTCHHHHHHEEEEEEEESSS-CEE
T ss_pred ---------------cCCCC-ChHHHhcChhhhhhccccceEE-EhhhhhcCccccccccccCCCCEEEEEcCCCC-EEE
Confidence 00123 344444421 123444 48999999877654 1245899999999865 776
Q ss_pred E---EECCCcEEEEec
Q 009814 511 W---TFNYKIAVLLNY 523 (524)
Q Consensus 511 i---E~~~hp~f~vqy 523 (524)
+ ++++.|++.|||
T Consensus 225 i~~i~~~~~~i~GVQf 240 (315)
T 1l9x_A 225 ISTMEGYKYPVYGVQW 240 (315)
T ss_dssp EEEEEESSSCEEEESS
T ss_pred EEEeccCCCCEEEEEe
Confidence 6 667789999998
|
| >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.3e-18 Score=163.53 Aligned_cols=162 Identities=14% Similarity=0.085 Sum_probs=104.9
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhc--cCCCEEEECCCCCCC
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNR 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l--~~~DGIllpGGfG~r 375 (524)
.+|+++ +|+.- .-.++.++|+.+|+.+.+. +++.+ + +.+ .++|||+||||++.+
T Consensus 25 ~~I~ii-D~g~~--~~~~i~~~l~~~G~~~~vv----~~~~~----------~-------~~l~~~~~dglil~Gg~~~~ 80 (218)
T 2vpi_A 25 GAVVIL-DAGAQ--YGKVIDRRVRELFVQSEIF----PLETP----------A-------FAIKEQGFRAIIISGGPNSV 80 (218)
T ss_dssp TCEEEE-ECSTT--TTHHHHHHHHHTTCCEEEE----CTTCC----------H-------HHHHHHTCSEEEEEC-----
T ss_pred CeEEEE-ECCCc--hHHHHHHHHHHCCCEEEEE----ECCCC----------h-------HHHhhcCCCEEEECCCCccc
Confidence 479999 46521 2358899999999876654 22111 0 122 569999999999875
Q ss_pred chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 376 g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
..+......+.+++.++|+||||+|||+|+.++|+++...+. .+. |.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~PilGIC~G~Qll~~~~GG~v~~~~~-----------------------~~~------G~~~v~ 131 (218)
T 2vpi_A 81 YAEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSV-----------------------RED------GVFNIS 131 (218)
T ss_dssp ----CCCCCGGGGTSSCCEEEETHHHHHHHHHTTCCEEEEEE-----------------------CSC------EEEEEE
T ss_pred ccccchhHHHHHHHcCCCEEEEcHHHHHHHHHhCCceEeCCC-----------------------Ccc------cEEEEE
Confidence 211111123445678999999999999999999998865321 112 234555
Q ss_pred eccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.++ +.+.+.++....+ .+.|+|.|+. + ..|+++++.+ ++ .+|++++++.|++.|||
T Consensus 132 ~~~~-~~l~~~l~~~~~v--~~~H~~~v~~-----l-~~~~~vlA~s-~~-~i~ai~~~~~~i~gvQf 188 (218)
T 2vpi_A 132 VDNT-CSLFRGLQKEEVV--LLTHGDSVDK-----V-ADGFKVVARS-GN-IVAGIANESKKLYGAQF 188 (218)
T ss_dssp ECTT-SGGGTTCCSEEEE--EECSEEEESS-----C-CTTCEEEEEE-TT-EEEEEEETTTTEEEESS
T ss_pred EccC-ChhHhcCCCCcEE--eehhhhHhhh-----c-CCCCEEEEEc-CC-eEEEEEECCCCEEEEEc
Confidence 5555 5555555322233 4779999852 2 3589999998 55 79999999999999998
|
| >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-17 Score=153.38 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=107.2
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhc--cCCCEEEECCCCCCCc
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRG 376 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l--~~~DGIllpGGfG~rg 376 (524)
+|++++ |.. +...++.++|+.+|+.+.+. +.+. .+ +.+ .++|||++|||+ ++.
T Consensus 2 mi~iid-~~~--~~~~~~~~~l~~~G~~~~~~------~~~~--------~~-------~~~~~~~~dglil~Gg~-~~~ 56 (189)
T 1wl8_A 2 MIVIMD-NGG--QYVHRIWRTLRYLGVETKII------PNTT--------PL-------EEIKAMNPKGIIFSGGP-SLE 56 (189)
T ss_dssp EEEEEE-CSC--TTHHHHHHHHHHTTCEEEEE------ETTC--------CH-------HHHHHTCCSEEEECCCS-CTT
T ss_pred eEEEEE-CCC--chHHHHHHHHHHCCCeEEEE------ECCC--------Ch-------HHhcccCCCEEEECCCC-Chh
Confidence 489995 542 13568899999999876653 2221 01 222 369999999998 663
Q ss_pred hhH-HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 377 VQG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 377 ~eg-~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
..+ ..+.++.+.+.++|+||||+|||+|+.++|+++.+++.. +.|++ ++.
T Consensus 57 ~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~-----------------------~~G~~------~~~ 107 (189)
T 1wl8_A 57 NTGNCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGEKA-----------------------EYSLV------EIE 107 (189)
T ss_dssp CCTTHHHHHHTGGGTCSCEEEETHHHHHHHHHHTCEEEECSCC-----------------------SCEEE------EEE
T ss_pred hhhhHHHHHHHHhhCCCeEEEEcHHHHHHHHHhCCceecCCCc-----------------------ccCce------eEE
Confidence 233 467777776889999999999999999999998654211 12221 222
Q ss_pred eccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+... +.+.+.++ ..+.-.|.|.+.++ .+ ..++++.+.++++. +|+++++++|++.|||
T Consensus 108 ~~~~-~~l~~~~~--~~~~~~~~h~~~v~-----~l-~~~~~vla~s~~g~-i~a~~~~~~~~~gvQf 165 (189)
T 1wl8_A 108 IIDE-XEIFKGLP--KRLKVWESHMDEVK-----EL-PPKFKILARSETCP-IEAMKHEELPIYGVQF 165 (189)
T ss_dssp ESCC---CCTTSC--SEEEEEECCSEEEE-----EC-CTTEEEEEEESSCS-CSEEEESSSCEEEESS
T ss_pred EecC-chHHhCCC--CceEEEEEeeeehh-----hC-CCCcEEEEEcCCCC-EEEEEeCCceEEEEec
Confidence 2222 22222222 22333577777653 22 45899999999885 9999999999999998
|
| >1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=156.46 Aligned_cols=167 Identities=16% Similarity=0.172 Sum_probs=114.3
Q ss_pred CCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeC-CCccccccCCChhhhhHHHHhccCCCEEEECCCCC
Q 009814 295 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPA-CDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (524)
Q Consensus 295 ~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s-~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG 373 (524)
...++|.++-.+ ... +-.++.++|+..|+++.+. ..+. +.+ | +.+.++||||+|||++
T Consensus 10 ~~~~~~~~i~~~-~~~-~~~~i~~~l~~~G~~v~v~----~~~~~~~~--------~-------~~l~~~Dglil~GG~~ 68 (239)
T 1o1y_A 10 HHHVRVLAIRHV-EIE-DLGMMEDIFREKNWSFDYL----DTPKGEKL--------E-------RPLEEYSLVVLLGGYM 68 (239)
T ss_dssp CCCCEEEEECSS-TTS-SCTHHHHHHHHTTCEEEEE----CGGGTCCC--------S-------SCGGGCSEEEECCCSC
T ss_pred cceeEEEEEECC-CCC-CchHHHHHHHhCCCcEEEe----CCcCcccc--------c-------cchhcCCEEEECCCCc
Confidence 356889888543 233 4557888899999876543 1111 111 1 3467899999999997
Q ss_pred CC-c------hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCc
Q 009814 374 NR-G------VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 446 (524)
Q Consensus 374 ~r-g------~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~Ggt 446 (524)
.+ + +....+.++++.++++|+||||+|||+|+.++|+++...+.. ++
T Consensus 69 ~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g----------------------~~---- 122 (239)
T 1o1y_A 69 GAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNG----------------------EE---- 122 (239)
T ss_dssp CTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTC----------------------CE----
T ss_pred cccCCccChhHHHHHHHHHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCCC----------------------Cc----
Confidence 64 2 246788999999999999999999999999999988543210 01
Q ss_pred ccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 447 MRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 447 mrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.|.+++...++ +.+.+.++ ..+...|.|+|.+. + ..|+++.+.+.++. +|+++..+ ++.|||
T Consensus 123 --~G~~~v~~~~~-~~l~~~~~--~~~~~~~~H~~~v~------l-p~~~~vlA~s~~~~-iea~~~~~--i~gvQf 184 (239)
T 1o1y_A 123 --IGWYFVEKVSD-NKFFREFP--DRLRVFQWHGDTFD------L-PRRATRVFTSEKYE-NQGFVYGK--AVGLQF 184 (239)
T ss_dssp --EEEEEEEECCC-CGGGTTSC--SEEEEEEEESEEEC------C-CTTCEEEEECSSCS-CSEEEETT--EEEESS
T ss_pred --cccEEEEECCC-CchHHhCC--CCceeEeecCCccc------c-CCCCEEEEEcCCCC-EEEEEECC--EEEEEe
Confidence 12334444344 44444442 23444688999872 2 45899999988775 99999986 999998
|
| >3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-16 Score=175.63 Aligned_cols=185 Identities=18% Similarity=0.222 Sum_probs=119.0
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhc--cCCCEEEECCCCCCC
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNR 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l--~~~DGIllpGGfG~r 375 (524)
.+|+++ ||+.. .-.+|.++|+.+|+.+.+. +.+. ++ +.+ .++|||||||||+++
T Consensus 8 ~~Ilil-D~Gs~--~~~~I~r~lre~Gv~~eiv----~~~~-~~----------------~~i~~~~~dgIIlsGGp~s~ 63 (556)
T 3uow_A 8 DKILVL-NFGSQ--YFHLIVKRLNNIKIFSETK----DYGV-EL----------------KDIKDMNIKGVILSGGPYSV 63 (556)
T ss_dssp CEEEEE-ESSCT--THHHHHHHHHHTTCCEEEE----ETTC-CG----------------GGTTTSCEEEEEECCCSCCT
T ss_pred CEEEEE-ECCCc--cHHHHHHHHHHCCCeEEEE----ECCC-CH----------------HHHhhcCCCEEEECCCCCcc
Confidence 479999 58731 3358999999999887664 2111 11 222 378999999999986
Q ss_pred chhH----HHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccC-------CC---CCCCeeeeCCCCCcC
Q 009814 376 GVQG----KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFD-------PN---TKNPCVIFMPEGSKT 441 (524)
Q Consensus 376 g~eg----~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~-------~~---~~~pVi~l~~e~~~~ 441 (524)
..++ ....++.+.+.++|+||||+|||+|+.++|+++.... +.|++ +. .++|++..+++.. +
T Consensus 64 ~~~~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~lGG~V~~~~---~~E~G~~~l~~~~~~~~~~~p~v~~~~~~~-~ 139 (556)
T 3uow_A 64 TEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSK---TSEYGCTDVNILRNDNINNITYCRNFGDSS-S 139 (556)
T ss_dssp TSTTCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHHTTCEEEEEE---EEEEEEEEEEECCTTGGGGCSGGGGC---C-C
T ss_pred cccCCcchhHHHHHHhhhcCCCEEEECHHHHHHHHHhCCcEecCC---CcccCCcceeeccCcccccccceecccccc-c
Confidence 3322 1245566778899999999999999999999996532 23332 11 2356665554322 4
Q ss_pred CCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEE
Q 009814 442 HMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLL 521 (524)
Q Consensus 442 ~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~v 521 (524)
||||. ...+.+...++++..+|. ....-.+.|+|.|.. + ..|+++.|.++++ .++++++++++++.|
T Consensus 140 ~mg~~----~n~~~~~~~~~Lf~gl~~--~~~~v~~~H~d~V~~-----l-p~g~~vlA~s~~~-~i~ai~~~~~~i~Gv 206 (556)
T 3uow_A 140 AMDLY----SNYKLMNETCCLFENIKS--DITTVWMNHNDEVTK-----I-PENFYLVSSSENC-LICSIYNKEYNIYGV 206 (556)
T ss_dssp HHHHH----TTSCCCC--CGGGTTCCS--SEEEEEEEEEEEEEE-----C-CTTCEEEEEETTE-EEEEEEETTTTEEEE
T ss_pred ccccc----cccccccccchhhccccc--CceEEEEEccceeec-----c-CCCcEEEEEeCCC-CEEEEEECCCCEEEE
Confidence 55542 122222222133434432 223335778887742 2 4589999999887 499999999999999
Q ss_pred ec
Q 009814 522 NY 523 (524)
Q Consensus 522 qy 523 (524)
||
T Consensus 207 QF 208 (556)
T 3uow_A 207 QY 208 (556)
T ss_dssp SS
T ss_pred Ec
Confidence 98
|
| >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=142.84 Aligned_cols=165 Identities=12% Similarity=0.105 Sum_probs=97.4
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCC-CccccccCCChhhhhHHHHhcc--CCCEEEECCCCCC
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPAC-DLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGN 374 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~-~le~~~~~~~p~~y~~~~~~l~--~~DGIllpGGfG~ 374 (524)
++|++++.|.+. ..++.++|+.+|+++.+. +.+ ..+ +..+.+. +.|++|++||+|+
T Consensus 1 ~~i~iiDn~~s~---~~~i~~~l~~~G~~~~v~------~~~~~~~------------~i~~~l~~~~~~~iil~gGpg~ 59 (192)
T 1i1q_B 1 ADILLLDNIDSF---TWNLADQLRTNGHNVVIY------RNHIPAQ------------TLIDRLATMKNPVLMLSPGPGV 59 (192)
T ss_dssp CEEEEEECSCSS---HHHHHHHHHHTTCEEEEE------ETTSCSH------------HHHHHHTTCSSEEEEECCCSSC
T ss_pred CcEEEEECCccH---HHHHHHHHHHCCCeEEEE------ECCCCHH------------HHHHHhhhccCCeEEECCCCcC
Confidence 379999756532 367899999999876653 221 110 0112222 3457999999999
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceee
Q 009814 375 RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 454 (524)
Q Consensus 375 rg~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v 454 (524)
+...+....+..+.+.++|+||||+|||+|+.++|+++..... .+. +.+.. .
T Consensus 60 ~~~~~~~~~l~~~~~~~~PilGIC~G~Qll~~~~Gg~v~~~~~---~~~-----g~~~~--------------------~ 111 (192)
T 1i1q_B 60 PSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGE---ILH-----GKATS--------------------I 111 (192)
T ss_dssp GGGSTTHHHHHHHHBTTBCEEEETHHHHHHHHHTSCCCCC------CCS-----SEEEE--------------------E
T ss_pred chhCchHHHHHHHHhcCCCEEEECcChHHHHHHhCCEEEeCCC---cEe-----cceeE--------------------E
Confidence 8544444444445677899999999999999999998743211 010 00000 0
Q ss_pred EeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 455 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 455 ~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
. ....++... .. ....-.+.|+|.|. .+ ..|+++.+. .+ ..++++++++.|++.|||
T Consensus 112 ~-~~~~~l~~~-~~--~~~~v~~~H~~~v~-----~l-p~~~~v~a~-~~-~~~~ai~~~~~~~~gvQf 168 (192)
T 1i1q_B 112 E-HDGQAMFAG-LA--NPLPVARYHSLVGS-----NV-PAGLTINAH-FN-GMVMAVRHDADRVCGFQF 168 (192)
T ss_dssp E-ECCCGGGTT-SC--SSEEEEECCC---C-----CC-CTTCEEEEE-ET-TEEEEEEETTTTEEEESS
T ss_pred e-cCCChHHhc-CC--CCcEEEechhhHhh-----hC-CCccEEEEC-CC-CcEEEEEECCCCEEEEEc
Confidence 0 011011111 11 11222477888764 22 357888874 34 469999999999999998
|
| >3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-16 Score=169.66 Aligned_cols=166 Identities=19% Similarity=0.219 Sum_probs=104.9
Q ss_pred eEEEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEE-eeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 298 VRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDW-IPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~-i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
.+|+++ ||+. .| .+|.++|+++|+.+.+. .| .+.+++ .-.++|||||||||+++
T Consensus 11 ~~I~Il-D~g~---~~~~~i~r~lr~~Gv~~~i~---p~~~~~~~i-----------------~~~~~dgIILsGGp~sv 66 (527)
T 3tqi_A 11 HRILIL-DFGS---QYAQLIARRVREIGVYCELM---PCDIDEETI-----------------RDFNPHGIILSGGPETV 66 (527)
T ss_dssp SEEEEE-ECSC---TTHHHHHHHHHHHTCEEEEE---ETTCCSSSS-----------------TTTCCSEEEECCCCC--
T ss_pred CeEEEE-ECCC---ccHHHHHHHHHHCCCeEEEE---ECCCCHHHH-----------------HhcCCCEEEECCcCccc
Confidence 479999 5873 44 58899999999887764 11 111111 01267999999999987
Q ss_pred chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 376 g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
..++...+.+.+.+.++|+||||+|||+|+.++|+++...+ ..|+ |.+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~~~---~~e~--------------------------G~~~v~ 117 (527)
T 3tqi_A 67 TLSHTLRAPAFIFEIGCPVLGICYGMQTMAYQLGGKVNRTA---KAEF--------------------------GHAQLR 117 (527)
T ss_dssp -------CCCSTTTSSSCEEEETHHHHHHHHHSSSCBC--------CE--------------------------EEEEEE
T ss_pred ccCCChhhHHHHHhcCCCEEEEChHHHHHHHHcCCeEEeCC---Cccc--------------------------cceEEE
Confidence 55565666677788899999999999999999999985421 1121 222333
Q ss_pred eccCCcccccccCC-----cceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 456 FQIKDCKSAKLYGN-----RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~-----~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+++.++..+... .....-.+.|+|.|.. + ..|+++.+.+.++ .+++++++++|++.|||
T Consensus 118 ~~~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~-----l-p~g~~v~A~s~~~-~i~ai~~~~~~~~GvQF 183 (527)
T 3tqi_A 118 VLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSE-----L-PPGFEATACTDNS-PLAAMADFKRRFFGLQF 183 (527)
T ss_dssp ESSCTTTTSSCCSBCCTTSCCEEEEEEESSSCBCS-----C-CTTCEEEEEETTE-EEEEEECSSSCEEEESB
T ss_pred EcCCChhhcCCccccccccccceEEEEEcccchhc-----c-CCCCEEEEEeCCC-cEEEEEcCCCCEEEEEe
Confidence 33331122222110 0023335789998853 2 4589999999765 59999999999999998
|
| >3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-16 Score=174.41 Aligned_cols=160 Identities=9% Similarity=0.026 Sum_probs=105.0
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~ 377 (524)
.+|.+++.|.+ ...++.++|+..|+.+.+. +.+.. ..+.++|||||+||||++..
T Consensus 447 k~IlviD~gds---f~~~l~~~l~~~G~~v~Vv----~~d~~------------------~~~~~~DgIIlsGGPg~p~d 501 (645)
T 3r75_A 447 CRALIVDAEDH---FTAMIAQQLSSLGLATEVC----GVHDA------------------VDLARYDVVVMGPGPGDPSD 501 (645)
T ss_dssp CEEEEEESSCT---HHHHHHHHHHHTTCEEEEE----ETTCC------------------CCGGGCSEEEECCCSSCTTC
T ss_pred CEEEEEECCcc---HHHHHHHHHHHCCCEEEEE----ECCCc------------------ccccCCCEEEECCCCCChhh
Confidence 47999964432 3468899999999876654 32221 12457899999999999843
Q ss_pred h------HHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccc
Q 009814 378 Q------GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGS 451 (524)
Q Consensus 378 e------g~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~ 451 (524)
. .+.++++++++.++|+||||||||+|+.+||+++.+.+. ++.|++
T Consensus 502 ~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~~~-----------------------~~~G~~----- 553 (645)
T 3r75_A 502 AGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRREV-----------------------PNQGIQ----- 553 (645)
T ss_dssp TTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEE-----------------------EEEEEE-----
T ss_pred hhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcCCC-----------------------cccccc-----
Confidence 3 367889999999999999999999999999999965432 112222
Q ss_pred eeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 452 RRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 452 ~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+.+... ++...+|. ...+.+ | |... ...+ ..|+++++.+.++. ++++++++ ++.|||
T Consensus 554 ~~i~~~~~-~l~~~~~~-~~~v~~-~-h~~~-----~~~l-p~g~~v~A~s~dg~-i~Ai~~~~--~~GVQF 612 (645)
T 3r75_A 554 VEIDLFGQ-RERVGFYN-TYVAQT-V-RDEM-----DVDG-VGTVAISRDPRTGE-VHALRGPT--FSSMQF 612 (645)
T ss_dssp EEEEETTE-EEEEEEEE-EEEEBC-S-CSEE-----EETT-TEEEEEEECTTTCB-EEEEEETT--EEEESS
T ss_pred eEEeeecC-cceecCCC-cEEEEE-e-hhhc-----cccC-CCCeEEEEEcCCCc-EEEEEcCC--EEEEEe
Confidence 22222222 22223331 222221 2 2111 1112 35899999998775 99999885 699998
|
| >2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=143.92 Aligned_cols=159 Identities=15% Similarity=0.171 Sum_probs=96.6
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg- 376 (524)
++|+++.- .++|.++.++|+.+|+.+.+. +.+ +.+.++|||++|||++.+.
T Consensus 1 m~i~vl~~----~g~~~~~~~~l~~~G~~~~~~------~~~------------------~~~~~~dglil~GG~~~~~~ 52 (186)
T 2ywj_A 1 MIIGVLAI----QGDVEEHEEAIKKAGYEAKKV------KRV------------------EDLEGIDALIIPGGESTAIG 52 (186)
T ss_dssp CEEEEECS----SSCCHHHHHHHHHTTSEEEEE------CSG------------------GGGTTCSEEEECCSCHHHHH
T ss_pred CEEEEEec----CcchHHHHHHHHHCCCEEEEE------CCh------------------HHhccCCEEEECCCCchhhh
Confidence 37899953 348889999999999865543 211 2467789999999987652
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccce
Q 009814 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 452 (524)
Q Consensus 377 ----~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~ 452 (524)
..+.++. ++++++|+||||+|||+|+.++|+++-++.. .+...... . .|. +...+
T Consensus 53 ~~~~~~~~~~~---i~~~~~PilGIC~G~Qll~~~~gg~~~~lg~-----------~~~~~~~~----~-~~~--~~~~~ 111 (186)
T 2ywj_A 53 KLMKKYGLLEK---IKNSNLPILGTCAGMVLLSKGTGINQILLEL-----------MDITVKRN----A-YGR--QVDSF 111 (186)
T ss_dssp HHHHHTTHHHH---HHTCCCCEEEETHHHHHHSSCCSSCCCCCCC-----------SSEEEETT----T-TCS--SSCCE
T ss_pred hhhhccCHHHH---HHhcCCcEEEECHHHHHHHHHhCCCcCccCC-----------CceeEEec----c-CCC--cccce
Confidence 1223344 4478999999999999999999887421110 01100000 0 010 01111
Q ss_pred eeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 453 RTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 453 ~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
... .++..+ .++.-.+.|+|.|+. ++..|+++++.+ | ..+|++|.+ +++.|||
T Consensus 112 ~~~-----~~~~~~----~~~~~~~~H~~~v~~-----l~~~~~~v~a~s-d-~~~~a~~~~--~~~gvQf 164 (186)
T 2ywj_A 112 EKE-----IEFKDL----GKVYGVFIRAPVVDK-----ILSDDVEVIARD-G-DKIVGVKQG--KYMALSF 164 (186)
T ss_dssp EEE-----EEETTT----EEEEEEESSCCEEEE-----ECCTTCEEEEEE-T-TEEEEEEET--TEEEESS
T ss_pred ecc-----cccccC----CcEEEEEEecceeee-----cCCCCeEEEEEE-C-CEEEEEeeC--CEEEEEC
Confidence 111 111111 112223568887752 213589999998 5 469999974 7999998
|
| >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=149.54 Aligned_cols=166 Identities=13% Similarity=0.190 Sum_probs=111.4
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC---
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--- 375 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r--- 375 (524)
+|.++- ..... ...++.++|+..|+++.+. .....+ ..| +.+.++||||||||++++
T Consensus 5 ~vliiq-h~~~e-~~~~i~~~l~~~G~~v~v~----~~~~~~-------~~p-------~~~~~~d~lIl~GGp~~~~d~ 64 (250)
T 3m3p_A 5 PVMIIQ-FSASE-GPGHFGDFLAGEHIPFQVL----RMDRSD-------PLP-------AEIRDCSGLAMMGGPMSANDD 64 (250)
T ss_dssp CEEEEE-SSSSC-CCHHHHHHHHHTTCCEEEE----EGGGTC-------CCC-------SCGGGSSEEEECCCSSCTTSC
T ss_pred eEEEEE-CCCCC-CHHHHHHHHHHCCCeEEEE----eccCCC-------cCc-------CccccCCEEEECCCCCccccc
Confidence 566662 33222 5567888999999887664 211111 011 245689999999999864
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCccccccee
Q 009814 376 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 453 (524)
Q Consensus 376 --g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~ 453 (524)
-+...++.++.+.+.++|+||||+|||+|+.++|++|...+. +++|| ++
T Consensus 65 ~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~~~-----------------------~e~G~------~~ 115 (250)
T 3m3p_A 65 LPWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDSPH-----------------------AEIGW------VR 115 (250)
T ss_dssp CTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEE-----------------------EEEEE------EE
T ss_pred chHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCEEEeCCC-----------------------Cceee------EE
Confidence 345677889999999999999999999999999999865321 12233 33
Q ss_pred eEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 454 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 454 v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+.+.+. +....+++-...+.-.|.|+|.|. + ..|+++.+.+.++ .+++++..+ +++.|||
T Consensus 116 v~~~~~-~~~~~l~g~~~~~~v~~~H~~~v~------l-p~~~~vlA~s~~~-~~~a~~~~~-~~~GvQf 175 (250)
T 3m3p_A 116 AWPQHV-PQALEWLGTWDELELFEWHYQTFS------I-PPGAVHILRSEHC-ANQAYVLDD-LHIGFQC 175 (250)
T ss_dssp EEECSS-HHHHHHHSCSSCEEEEEEEEEEEC------C-CTTEEEEEEETTE-EEEEEEETT-TEEEESS
T ss_pred EEEecC-CCCcccccCCCccEEEEEccceee------c-CCCCEEEEEeCCC-CEEEEEECC-eeEEEEe
Confidence 444332 222233321223333578888872 2 4589999999886 599999988 4999998
|
| >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.9e-16 Score=168.03 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=106.0
Q ss_pred eEEEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhc--cCCCEEEECCCCCC
Q 009814 298 VRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGN 374 (524)
Q Consensus 298 v~IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l--~~~DGIllpGGfG~ 374 (524)
.+|+++ +|+. .| .++.++|+.+|+.+.+. +.+. ++ +.+ .++|||||||||++
T Consensus 8 ~~IlIl-D~g~---~~~~~i~r~lr~~G~~~~i~------p~~~--------~~-------~~i~~~~~dgiILsGGp~s 62 (525)
T 1gpm_A 8 HRILIL-DFGS---QYTQLVARRVRELGVYCELW------AWDV--------TE-------AQIRDFNPSGIILSGGPES 62 (525)
T ss_dssp SEEEEE-ECSC---TTHHHHHHHHHHTTCEEEEE------ESCC--------CH-------HHHHHHCCSEEEECCCSSC
T ss_pred CEEEEE-ECCC---ccHHHHHHHHHHCCCEEEEE------ECCC--------CH-------HHHhccCCCEEEECCcCcc
Confidence 579999 5873 33 57889999999876654 2211 01 122 26899999999987
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceee
Q 009814 375 RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 454 (524)
Q Consensus 375 rg~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v 454 (524)
+..++.....+.+.+.++|+||||+|||+|+.++|+++.+.+ +.|++ .+.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~PvLGIC~G~Qlla~~~GG~V~~~~---~~e~G--------------------------~~~v 113 (525)
T 1gpm_A 63 TTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASN---EREFG--------------------------YAQV 113 (525)
T ss_dssp TTSTTCCCCCGGGGTSSSCEEEETHHHHHHHHHHTCEEECCS---SCEEE--------------------------EEEE
T ss_pred ccccCCcchHHHHHHCCCCEEEEChHHHHHHHHcCCEEEeCC---Ccccc--------------------------eEEE
Confidence 632221222355667899999999999999999999996532 22221 1122
Q ss_pred EeccCCcccccccCC--------cceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 455 YFQIKDCKSAKLYGN--------RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 455 ~l~~g~s~~~~iYg~--------~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.+.++ +.+.+-+.. ...+ .+.|+|.|.. + ..|++++|.++++. ++++++++++++.|||
T Consensus 114 ~~~~~-~~L~~~l~~~~~~~~~~~~~v--~~~H~~~V~~-----l-p~g~~v~A~s~~~~-i~ai~~~~~~i~gvQF 180 (525)
T 1gpm_A 114 EVVND-SALVRGIEDALTADGKPLLDV--WMSHGDKVTA-----I-PSDFITVASTESCP-FAIMANEEKRFYGVQF 180 (525)
T ss_dssp EECSC-CTTTTTCCSEECTTSCEEEEE--EEEECSEEEE-----C-CTTCEEEEECSSCS-CSEEEETTTTEEEESB
T ss_pred EeCCC-CHhhccCccccccccccceEE--EEEccceeee-----C-CCCCEEEEECCCCC-EEEEEECCCCEEEEec
Confidence 22222 111111111 1223 3678888742 2 46899999998875 9999999999999998
|
| >1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-16 Score=146.20 Aligned_cols=162 Identities=19% Similarity=0.212 Sum_probs=101.2
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcC-----CceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCC
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHAS-----VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 372 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag-----~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGf 372 (524)
++|+++ +|+ . .++.|+.++|+.+| +++.+. +.. +. .++|||+||||
T Consensus 1 m~I~ii-d~~-~-g~~~s~~~~l~~~G~~~~~~~~~~~------~~~------------------~~-~~~dglilpG~- 51 (201)
T 1gpw_B 1 MRIGII-SVG-P-GNIMNLYRGVKRASENFEDVSIELV------ESP------------------RN-DLYDLLFIPGV- 51 (201)
T ss_dssp CEEEEE-CCS-S-SCCHHHHHHHHHHSTTBSSCEEEEE------CSC------------------CS-SCCSEEEECCC-
T ss_pred CEEEEE-ecC-C-chHHHHHHHHHHcCCCCCceEEEEE------CCC------------------cc-cCCCEEEECCC-
Confidence 379999 586 2 26788999999998 655543 211 13 57899999884
Q ss_pred CCCchh-------HHHHHHHHHHHcCCCEEEEhHhHHHHHHHhc--cccccccCCCCcccCCCCCCCeeeeCCCCCcCCC
Q 009814 373 GNRGVQ-------GKILAAKYAREHRIPYLGICLGMQVAVIEFA--RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHM 443 (524)
Q Consensus 373 G~rg~e-------g~i~air~are~~iP~LGICLGmQll~ie~g--r~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~ 443 (524)
|+++.. +..+.++.+.++++|+||||+|||+|+.+++ ++.-++.. ....+... +..+.+|+
T Consensus 52 g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~g~~G~~~~l~~---------~~g~v~~~-~~~~~~~~ 121 (201)
T 1gpw_B 52 GHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSL---------IEGNVVKL-RSRRLPHM 121 (201)
T ss_dssp SCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEETTEEEEECCCS---------SSEEEEEC-CCSSCSEE
T ss_pred CcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhhccCCCCCCcce---------eeeEEEEc-CCCCCCcc
Confidence 665321 4678889998999999999999999999886 33211110 01112111 10022344
Q ss_pred CCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCC-CCeEEEEEECCCcEEEEe
Q 009814 444 GGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-SQRMEVWTFNYKIAVLLN 522 (524)
Q Consensus 444 GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~d-g~~VE~iE~~~hp~f~vq 522 (524)
|| +++.+... + . ...+ .+.|+|.|.+. ++++.+.+++ |..+|+++.++ +++.||
T Consensus 122 g~------~~l~~~~~-~--~-----~~~v--~~~H~~~v~~~--------~~~vla~s~~~g~~~~a~~~~~-~i~gvQ 176 (201)
T 1gpw_B 122 GW------NEVIFKDT-F--P-----NGYY--YFVHTYRAVCE--------EEHVLGTTEYDGEIFPSAVRKG-RILGFQ 176 (201)
T ss_dssp EE------EEEEESSS-S--C-----CEEE--EEEESEEEEEC--------GGGEEEEEEETTEEEEEEEEET-TEEEES
T ss_pred cc------eeeEeccC-C--C-----CCeE--EEECcceeccC--------CCEEEEEEccCCceEEEEEECC-CEEEEE
Confidence 43 23332221 1 0 1112 36688888542 4567888775 64699999987 899999
Q ss_pred c
Q 009814 523 Y 523 (524)
Q Consensus 523 y 523 (524)
|
T Consensus 177 f 177 (201)
T 1gpw_B 177 F 177 (201)
T ss_dssp S
T ss_pred C
Confidence 8
|
| >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.5e-16 Score=167.35 Aligned_cols=159 Identities=14% Similarity=0.130 Sum_probs=104.0
Q ss_pred EEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhc--cCCCEEEECCCCCCCc
Q 009814 300 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRG 376 (524)
Q Consensus 300 IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l--~~~DGIllpGGfG~rg 376 (524)
|+++ ||+. .| .+|.++|+.+|+.+.+. +.+. ++ +.+ .++|||||||||++..
T Consensus 2 i~il-D~g~---~~~~~i~r~l~~~G~~~~i~------p~~~--------~~-------~~i~~~~~dgiIlsGGp~s~~ 56 (503)
T 2ywb_A 2 VLVL-DFGS---QYTRLIARRLRELRAFSLIL------PGDA--------PL-------EEVLKHRPQALILSGGPRSVF 56 (503)
T ss_dssp EEEE-ESSC---TTHHHHHHHHHTTTCCEEEE------ETTC--------CH-------HHHHTTCCSEEEECCCSSCSS
T ss_pred EEEE-ECCC---cHHHHHHHHHHHCCCEEEEE------ECCC--------CH-------HHHHhcCCCEEEECCCCchhc
Confidence 7888 5873 34 58999999999887654 2211 01 222 2579999999998762
Q ss_pred hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEe
Q 009814 377 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (524)
Q Consensus 377 ~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l 456 (524)
.++.....+.+.+.++|+||||+|||+|+.++|+++.+.+ ..|+ |+ +.+.+
T Consensus 57 ~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~~GG~v~~~~---~~e~--------------------G~------~~v~~ 107 (503)
T 2ywb_A 57 DPDAPRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERAG---RAEY--------------------GK------ALLTR 107 (503)
T ss_dssp CTTCCCCCGGGGCSSCCEEEETHHHHHHHHTTTCEEECC------CE--------------------EE------EECSE
T ss_pred cCCCcchHHHHHhCCCCEEEECHHHHHHHHHhCCeEeeCC---CCcc--------------------ce------EEEEe
Confidence 2221122355667899999999999999999999986432 1121 21 12222
Q ss_pred ccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 457 ~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.+ +.+.+-+.....+ .+.|+|.|.. + ..|++++|.+.++. +++++++++|++.|||
T Consensus 108 ~~--~~l~~~~~~~~~v--~~~H~~~v~~-----l-p~g~~v~A~s~~~~-i~ai~~~~~~~~gvQF 163 (503)
T 2ywb_A 108 HE--GPLFRGLEGEVQV--WMSHQDAVTA-----P-PPGWRVVAETEENP-VAAIASPDGRAYGVQF 163 (503)
T ss_dssp EC--SGGGTTCCSCCEE--EEECSCEEEE-----C-CTTCEEEEECSSCS-CSEEECTTSSEEEESB
T ss_pred cC--cHHhhcCCCccEE--EEECCCcccc-----C-CCCCEEEEEECCCC-EEEEEeCCCCEEEEec
Confidence 11 1122222212223 3778998852 2 46899999998865 9999999999999998
|
| >3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=142.92 Aligned_cols=165 Identities=14% Similarity=0.115 Sum_probs=106.9
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc--
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-- 376 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg-- 376 (524)
+|+++ ...... ....+.+.|+..|+++.+. .+...+ ..| +.+.++|||||||||+++.
T Consensus 2 ~i~vi-~h~~~e-~~g~~~~~l~~~g~~~~~~----~~~~~~-------~~p-------~~~~~~d~lii~GGp~~~~~~ 61 (236)
T 3l7n_A 2 RIHFI-LHETFE-APGAYLAWAALRGHDVSMT----KVYRYE-------KLP-------KDIDDFDMLILMGGPQSPSST 61 (236)
T ss_dssp EEEEE-ECCTTS-CCHHHHHHHHHTTCEEEEE----EGGGTC-------CCC-------SCGGGCSEEEECCCSSCTTCC
T ss_pred eEEEE-eCCCCC-CchHHHHHHHHCCCeEEEE----eeeCCC-------CCC-------CCccccCEEEECCCCCCcccc
Confidence 56666 343332 5567778888899877654 222111 011 2356899999999999851
Q ss_pred ------h--hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCccc
Q 009814 377 ------V--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 448 (524)
Q Consensus 377 ------~--eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~Ggtmr 448 (524)
+ ....+.++.+.+.++|+||||+|||+|+.++|+++.+.+. +++
T Consensus 62 ~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~-----------------------~~~----- 113 (236)
T 3l7n_A 62 KKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSPK-----------------------KEI----- 113 (236)
T ss_dssp TTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEEEE-----------------------EEE-----
T ss_pred cccCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecCCC-----------------------cee-----
Confidence 1 3478999999999999999999999999999998754321 111
Q ss_pred ccceeeEeccC--CcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 449 LGSRRTYFQIK--DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 449 Lg~~~v~l~~g--~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
|.+++.+.+. .+.+.+... ....-.|.|++.+ .+ ..++++.+.+.++. +++++..+ +++.|||
T Consensus 114 -G~~~v~~~~~~~~~~l~~~~~--~~~~v~~~H~~~~------~l-p~~~~vla~s~~~~-~~a~~~~~-~v~gvQf 178 (236)
T 3l7n_A 114 -GNYLISLTEAGKMDSYLSDFS--DDLLVGHWHGDMP------GL-PDKAQVLAISQGCP-RQIIKFGP-KQYAFQC 178 (236)
T ss_dssp -EEEEEEECTTGGGCGGGTTSC--SEEEEEEEEEEEC------CC-CTTCEEEEECSSCS-CSEEEEET-TEEEESS
T ss_pred -eeEEEEEccCcccChHHhcCC--CCcEEEEecCCcc------cC-CChheEEEECCCCC-EEEEEECC-CEEEEEe
Confidence 2234444331 011222221 2233346677642 12 35899999998775 99999875 8999997
|
| >3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=138.57 Aligned_cols=164 Identities=16% Similarity=0.088 Sum_probs=107.2
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-c
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-G 376 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-g 376 (524)
++|+++ .|.... ...++.++|+.+|+.+.+. +.. +.+.++||||||||++.. .
T Consensus 3 ~~i~il-~~~~~~-~~~~~~~~l~~~g~~~~~~------~~~------------------~~~~~~d~lil~Gg~~~~~~ 56 (213)
T 3d54_D 3 PRACVV-VYPGSN-CDRDAYHALEINGFEPSYV------GLD------------------DKLDDYELIILPGGFSYGDY 56 (213)
T ss_dssp CEEEEE-CCTTEE-EHHHHHHHHHTTTCEEEEE------CTT------------------CCCSSCSEEEECEECGGGGC
T ss_pred cEEEEE-EcCCCC-ccHHHHHHHHHCCCEEEEE------ecC------------------CCcccCCEEEECCCCchhhh
Confidence 579999 465432 2357899999999765543 211 135678999999997632 1
Q ss_pred --------hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH--hccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCc
Q 009814 377 --------VQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 446 (524)
Q Consensus 377 --------~eg~i~air~are~~iP~LGICLGmQll~ie--~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~Ggt 446 (524)
.....+.++.+.++++|+||||+|||+|+.+ +++++...+. .. .|.|
T Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~~~--------------------~~-~~~g-- 113 (213)
T 3d54_D 57 LRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQNSS--------------------GK-FICK-- 113 (213)
T ss_dssp SSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECCSS--------------------SS-CBCC--
T ss_pred hccccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecCCC--------------------Cc-eEee--
Confidence 2456788999888999999999999999988 5554421110 00 1223
Q ss_pred ccccceeeEec-cCCcccccccCCcceeeeeecc---ccccChhhHHhhhcCCeEEEEEeCC--C--CeEEEEEECCCcE
Q 009814 447 MRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRH---RYEVNPDMIARLENAGLSFTGKDET--S--QRMEVWTFNYKIA 518 (524)
Q Consensus 447 mrLg~~~v~l~-~g~s~~~~iYg~~~~I~erhrH---rYeVn~~~v~~l~~~Gl~~sg~~~d--g--~~VE~iE~~~hp~ 518 (524)
.+++.+. ++ +.+.+.++....+.--+.| +|.+.+ .++.+.+.+.+ | ..+|+++.++.++
T Consensus 114 ----~~~v~~~~~~-~~l~~~~~~~~~~~~~~~H~~~s~~~~~--------~~~~~~a~~~~~ng~~~~i~a~~~~~~~~ 180 (213)
T 3d54_D 114 ----WVDLIVENND-TPFTNAFEKGEKIRIPIAHGFGRYVKID--------DVNVVLRYVKDVNGSDERIAGVLNESGNV 180 (213)
T ss_dssp ----EEEEEECCCS-STTSTTSCTTCEEEEECCBSSCEEECSS--------CCEEEEEESSCSSCCGGGEEEEECSSSCE
T ss_pred ----eEEEEeCCCC-CceeeccCCCCEEEEEeecCceEEEecC--------CCcEEEEEcCCCCCCccceeEEEcCCCCE
Confidence 3345554 34 4444444211223221245 888754 37888888765 6 5799999988999
Q ss_pred EEEec
Q 009814 519 VLLNY 523 (524)
Q Consensus 519 f~vqy 523 (524)
+.|||
T Consensus 181 ~gvQf 185 (213)
T 3d54_D 181 FGLMP 185 (213)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99998
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-15 Score=166.84 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=101.0
Q ss_pred eEEEEEeccCCCcchHH-HHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhc--cCCCEEEECCCCCC
Q 009814 298 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGN 374 (524)
Q Consensus 298 v~IaiVGkY~~~~day~-SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l--~~~DGIllpGGfG~ 374 (524)
.+|++++ |+. .|. .|.++|+.+|+.+.+. +.+.- + +.+ .++|||||||||++
T Consensus 30 ~~I~VLD-fg~---q~~~liar~lre~Gv~~~iv------p~~~~--------~-------e~i~~~~~dGIILsGGp~s 84 (697)
T 2vxo_A 30 GAVVILD-AGA---QYGKVIDRRVRELFVQSEIF------PLETP--------A-------FAIKEQGFRAIIISGGPNS 84 (697)
T ss_dssp CCEEEEE-EC-----CHHHHHHHHHHTTCCEEEE------ETTCC--------H-------HHHHHHTCSEEEEEECC--
T ss_pred CEEEEEE-CCC---chHHHHHHHHHHCCCEEEEE------ECCCC--------H-------HHHhhcCCCEEEECCCCCc
Confidence 4688884 652 333 4779999999887664 32210 0 222 58999999999998
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceee
Q 009814 375 RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 454 (524)
Q Consensus 375 rg~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v 454 (524)
+..++.....+.+.+.++|+||||+|||+|+.++|+++.+++ ..| .| .+++
T Consensus 85 ~~~~~~~~~~~~i~~~g~PvLGIC~G~QlLa~~lGG~v~~~~---~~e--------------------~G------~~~v 135 (697)
T 2vxo_A 85 VYAEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHKKS---VRE--------------------DG------VFNI 135 (697)
T ss_dssp -----CCCCCGGGTTSSCCEEEEEHHHHHHHHHTTCCBCC------------------------------------CEEE
T ss_pred ccCccchhHHHHHHhCCCCEEEECHHHHHHHHHhCCeEeecC---CCc--------------------cc------eEEE
Confidence 522111112234457889999999999999999999986532 112 12 2344
Q ss_pred EeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 455 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 455 ~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.+.++ +.+.+-+.....+ .+.|+|.|.. + ..|+++++.+. + .+++++++++|++.|||
T Consensus 136 ~~~~~-~~Lf~~l~~~~~v--~~~H~~~V~~-----l-p~g~~vlA~s~-~-~i~ai~~~~~~i~GvQF 193 (697)
T 2vxo_A 136 SVDNT-CSLFRGLQKEEVV--LLTHGDSVDK-----V-ADGFKVVARSG-N-IVAGIANESKKLYGAQF 193 (697)
T ss_dssp EECTT-SGGGTTCCSEEEE--CCCSSCCBSS-----C-CTTCEEEEEET-T-EEEEEEETTTTEEEESS
T ss_pred EecCC-ChhhhcCCccCcc--eeecccceec-----C-CCCeEEEEEeC-C-ceEEEEeCCCCEEEEEe
Confidence 44444 4344434222233 3668998852 2 45899999984 4 79999999999999998
|
| >2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=129.27 Aligned_cols=160 Identities=12% Similarity=0.093 Sum_probs=100.1
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
++|+++. + .+++.++.++|+.+|+.+.+. +.. +.+.++|||++|||++..
T Consensus 3 p~Igi~~-~---~~~~~~~~~~l~~~G~~~~~~------~~~------------------~~l~~~dglil~GG~~~~~~ 54 (191)
T 2ywd_A 3 GVVGVLA-L---QGDFREHKEALKRLGIEAKEV------RKK------------------EHLEGLKALIVPGGESTTIG 54 (191)
T ss_dssp CCEEEEC-S---SSCHHHHHHHHHTTTCCCEEE------CSG------------------GGGTTCSEEEECSSCHHHHH
T ss_pred cEEEEEe-c---CCchHHHHHHHHHCCCEEEEe------CCh------------------hhhccCCEEEECCCChhhhH
Confidence 5799985 3 247889999999999877653 211 245678999999996431
Q ss_pred c---hhHHHHHHHHHHHcC-CCEEEEhHhHHHHHHHhcc-ccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCccccc
Q 009814 376 G---VQGKILAAKYAREHR-IPYLGICLGMQVAVIEFAR-SVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 450 (524)
Q Consensus 376 g---~eg~i~air~are~~-iP~LGICLGmQll~ie~gr-~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg 450 (524)
. .....+.++.+.+++ +|+||||+|||+|+.++|+ ++. +.. + -.|..... ...|. +..
T Consensus 55 ~~~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~~gg~~~~--~~l-----g---~~~~~~~~-----~~~g~--~~~ 117 (191)
T 2ywd_A 55 KLAREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKEIVGYPEQ--PRL-----G---VLEAWVER-----NAFGR--QVE 117 (191)
T ss_dssp HHHHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEEETTCTTC--CCC-----C---CEEEEEET-----TCSCC--SSS
T ss_pred HhhhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHHhCCCCCC--ccc-----c---ccceEEEc-----CCcCC--ccc
Confidence 1 135678888888889 9999999999999999987 431 110 0 00110000 00111 111
Q ss_pred ce--eeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 451 SR--RTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 451 ~~--~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.+ ...+ ++ + ..+...+.|+|.+.+ + ..++++.+.+ + ..+|+++..+ ++.+||
T Consensus 118 ~~~~~~~~-~~------~----~~~~~~~~Hs~~v~~-----l-~~~~~~~a~~-~-~~~~a~~~~~--~~gvQf 171 (191)
T 2ywd_A 118 SFEEDLEV-EG------L----GSFHGVFIRAPVFRR-----L-GEGVEVLARL-G-DLPVLVRQGK--VLASSF 171 (191)
T ss_dssp EEEEEEEE-TT------T----EEEEEEEESCCEEEE-----E-CTTCEEEEEE-T-TEEEEEEETT--EEEESS
T ss_pred cccccccc-cC------C----CceeEEEEcccceec-----c-CCCcEEEEEE-C-CEEEEEEECC--EEEEEe
Confidence 11 1111 11 1 122234678887641 1 3478898888 4 5699999864 999997
|
| >1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=129.56 Aligned_cols=164 Identities=24% Similarity=0.271 Sum_probs=101.0
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~ 377 (524)
++|+++ +|+ . .++.++.++|+.+|+.+.+. +.+ +.+.++|||++|| +|++..
T Consensus 3 ~~I~ii-d~~-~-~~~~~~~~~l~~~G~~~~~~------~~~------------------~~l~~~d~lil~G-~g~~~~ 54 (200)
T 1ka9_H 3 MKALLI-DYG-S-GNLRSAAKALEAAGFSVAVA------QDP------------------KAHEEADLLVLPG-QGHFGQ 54 (200)
T ss_dssp CEEEEE-CSS-C-SCHHHHHHHHHHTTCEEEEE------SST------------------TSCSSCSEEEECC-CSCHHH
T ss_pred cEEEEE-eCC-C-ccHHHHHHHHHHCCCeEEEe------cCh------------------HHcccCCEEEECC-CCcHHH
Confidence 479999 575 2 37788899999999876653 211 2356899999977 455421
Q ss_pred -------hHHHHHHHHHHHcCCCEEEEhHhHHHHHHH---hccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcc
Q 009814 378 -------QGKILAAKYAREHRIPYLGICLGMQVAVIE---FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTM 447 (524)
Q Consensus 378 -------eg~i~air~are~~iP~LGICLGmQll~ie---~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~Ggtm 447 (524)
.+..+.++.+.++++|+||||+|||+|+.+ +|+ . ++.. . .+..+... +..+.+++||
T Consensus 55 ~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~~~~Gg-~---~~l~--~----~~g~v~~~-~~~~~~~~G~-- 121 (200)
T 1ka9_H 55 VMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEGSEEAPG-V---RGLG--L----VPGEVRRF-RAGRVPQMGW-- 121 (200)
T ss_dssp HHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSEETTSTT-C---CCCC--S----SSSEEEEC-CSSSSSEEEE--
T ss_pred HHHHHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHhccccCC-c---CCcc--c----cccEEEEC-CCCCCCceeE--
Confidence 346788999999999999999999999987 443 1 1110 0 11122221 1012234444
Q ss_pred cccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCC-CCeEEEEEECCCcEEEEec
Q 009814 448 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-SQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 448 rLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~d-g~~VE~iE~~~hp~f~vqy 523 (524)
+++.+.+ + +..+.+ ....+.|+|.+ +. ..+ .+ +.+.+ |..++++...+ +++.|||
T Consensus 122 ----~~v~~~~--~-l~~~~~----~~~~~~Hs~~~-~~------~~~-~v-a~s~~~g~~~~~~~~~~-~i~gvQf 177 (200)
T 1ka9_H 122 ----NALEFGG--A-FAPLTG----RHFYFANSYYG-PL------TPY-SL-GKGEYEGTPFTALLAKE-NLLAPQF 177 (200)
T ss_dssp ----EECEECG--G-GGGGTT----CEEEEEESEEC-CC------CTT-CC-EEEEETTEEEEEEEECS-SEEEESS
T ss_pred ----EEEEech--h-hhcCCC----CCEEEeccccc-CC------CCC-cE-EEEEeCCeEEEEEEeeC-CEEEEec
Confidence 3444433 2 333321 12247799988 42 123 45 77766 53467777766 9999998
|
| >1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=132.61 Aligned_cols=163 Identities=13% Similarity=0.131 Sum_probs=101.6
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
.+++|+++. + .++|.+..++|+.+|+.+.+. +.. +.+.++|||+||||++..
T Consensus 22 ~~~~I~il~-~---~~~~~~~~~~l~~~G~~~~~~------~~~------------------~~l~~~Dglil~GG~~~~ 73 (219)
T 1q7r_A 22 SNMKIGVLG-L---QGAVREHVRAIEACGAEAVIV------KKS------------------EQLEGLDGLVLPGGESTT 73 (219)
T ss_dssp CCCEEEEES-C---GGGCHHHHHHHHHTTCEEEEE------CSG------------------GGGTTCSEEEECCCCHHH
T ss_pred CCCEEEEEe-C---CCCcHHHHHHHHHCCCEEEEE------CCH------------------HHHhhCCEEEECCCChHH
Confidence 357899994 4 246777789999999865543 221 246689999999998753
Q ss_pred c-----hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCccccc
Q 009814 376 G-----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 450 (524)
Q Consensus 376 g-----~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg 450 (524)
. ..+..+.++.+.++++|+||||+|||+|+.++|+++.. . .+. .|+..-.. ..|. +.+
T Consensus 74 ~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~~gg~~~~--~-----lg~---~~~~~~~~-----~~g~--~~~ 136 (219)
T 1q7r_A 74 MRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYDEP--H-----LGL---MDITVERN-----SFGR--QRE 136 (219)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEEEESSCCC--C-----CCC---EEEEEECH-----HHHC--CCC
T ss_pred HHHHhhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCCCcC--C-----cCc---cceEEEec-----CCCc--ccc
Confidence 1 23457889999999999999999999999999887521 1 100 01100000 0011 111
Q ss_pred ce--eeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 451 SR--RTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 451 ~~--~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
.+ .+.+ ++ |+ .++...+.|++.|.. + ..++++++.+ |+ .+|+++.. +++.|||
T Consensus 137 ~~~~~~~~-~g-------~g--~~~~~~~~h~~~v~~-----l-~~~~~v~a~s-dg-~~ea~~~~--~i~GvQf 191 (219)
T 1q7r_A 137 SFEAELSI-KG-------VG--DGFVGVFIRAPHIVE-----A-GDGVDVLATY-ND-RIVAARQG--QFLGCSF 191 (219)
T ss_dssp CEEEEEEE-TT-------TE--EEEEEEESSCCEEEE-----E-CTTCEEEEEE-TT-EEEEEEET--TEEEESS
T ss_pred ceecCccc-CC-------CC--CceEEEEEecceeec-----c-CCCcEEEEEc-CC-EEEEEEEC--CEEEEEE
Confidence 11 1112 11 21 123223557766532 2 3578999988 55 69999984 7999997
|
| >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-13 Score=128.64 Aligned_cols=89 Identities=15% Similarity=0.163 Sum_probs=64.9
Q ss_pred CCCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCC
Q 009814 295 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (524)
Q Consensus 295 ~~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~ 374 (524)
.++++|+++ +|. .+|.++.++|+.+|+.+.+. +.. +.+.++|||++|||+..
T Consensus 18 ~~~~~I~ii-~~~---~~~~~~~~~l~~~g~~~~~~------~~~------------------~~l~~~d~iil~GG~~~ 69 (208)
T 2iss_D 18 GSHMKIGVL-GVQ---GDVREHVEALHKLGVETLIV------KLP------------------EQLDMVDGLILPGGEST 69 (208)
T ss_dssp --CCEEEEE-CSS---SCHHHHHHHHHHTTCEEEEE------CSG------------------GGGGGCSEEEECSSCHH
T ss_pred CCCcEEEEE-ECC---CchHHHHHHHHHCCCEEEEe------CCh------------------HHHhhCCEEEECCCcHH
Confidence 456799999 572 38999999999998765432 211 23567999999998533
Q ss_pred C-c----hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccc
Q 009814 375 R-G----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 411 (524)
Q Consensus 375 r-g----~eg~i~air~are~~iP~LGICLGmQll~ie~gr~ 411 (524)
. + ..+..+.++.+.++++|+||||+|||+|+.++++.
T Consensus 70 ~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~ 111 (208)
T 2iss_D 70 TMIRILKEMDMDEKLVERINNGLPVFATCAGVILLAKRIKNY 111 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHEEEEC--
T ss_pred HHHhhhhhhhHHHHHHHHHHCCCeEEEECHHHHHHHHHcCCC
Confidence 2 1 12346788999899999999999999999988875
|
| >2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.9e-13 Score=125.96 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=97.8
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg- 376 (524)
++|++++ + .++|.+..++|+.+|+.+.+. +.. +.+.++|||++|||++...
T Consensus 2 m~I~il~-~---~~~~~~~~~~l~~~g~~~~~~------~~~------------------~~l~~~d~iil~GG~~~~~~ 53 (196)
T 2nv0_A 2 LTIGVLG-L---QGAVREHIHAIEACGAAGLVV------KRP------------------EQLNEVDGLILPGGESTTMR 53 (196)
T ss_dssp CEEEEEC-S---SSCCHHHHHHHHHTTCEEEEE------CSG------------------GGGGGCSEEEECCSCHHHHH
T ss_pred cEEEEEE-c---cCCcHHHHHHHHHCCCEEEEe------CCh------------------HHHhhCCEEEECCCChhhHH
Confidence 5899994 5 347888889999999765432 221 2356789999999986541
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccce
Q 009814 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 452 (524)
Q Consensus 377 ----~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~ 452 (524)
..+..+.++.+.++++|+||||+|||+|+.++++++.. +.+ -.|+...+. ..|.. .+.
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~~gg~~~~-------~lg---~~~~~~~~~-----~~g~~--~~~- 115 (196)
T 2nv0_A 54 RLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNP-------HLG---LLNVVVERN-----SFGRQ--VDS- 115 (196)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBCCC----C-------CCC---CSCEEEECC-----CSCTT--TSE-
T ss_pred HHhhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHHhcCCCCC-------ccc---CCceeEecc-----CCCcc--ccc-
Confidence 12347888899899999999999999999998886521 111 011111110 01111 010
Q ss_pred eeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 453 RTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 453 ~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+..+ +.+.. |+ . ++...+.|++.|.. + ..++++.+.+ |+ .+|+++.. +++.+||
T Consensus 116 ---~~~~-~~~~~-~g-~-~~~~~~~h~~~v~~-----~-~~~~~v~a~~-d~-~~~a~~~~--~~~gvQf 169 (196)
T 2nv0_A 116 ---FEAD-LTIKG-LD-E-PFTGVFIRAPHILE-----A-GENVEVLSEH-NG-RIVAAKQG--QFLGCSF 169 (196)
T ss_dssp ---EEEE-ECCTT-CS-S-CEEEEEESCCEEEE-----E-CTTCEEEEEE-TT-EEEEEEET--TEEEESS
T ss_pred ---ccCC-ccccc-CC-C-ceEEEEEecceecc-----c-CCCcEEEEEE-CC-EEEEEEEC--CEEEEEE
Confidence 1111 22222 32 1 23223457776642 2 3578888887 44 58999874 7999997
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.5e-12 Score=137.64 Aligned_cols=179 Identities=13% Similarity=0.078 Sum_probs=102.3
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg 376 (524)
+++|+++ +|.. ..+.++.++|+.+|+.+.+. +..+ . ..+.++|||||||| |++.
T Consensus 4 m~~I~Ii-d~~~--g~~~~~~~~l~~~G~~~~vv------~~~~--~--------------~~l~~~DglILpGg-G~~~ 57 (555)
T 1jvn_A 4 MPVVHVI-DVES--GNLQSLTNAIEHLGYEVQLV------KSPK--D--------------FNISGTSRLILPGV-GNYG 57 (555)
T ss_dssp SCEEEEE-CCSC--SCCHHHHHHHHHTTCEEEEE------SSGG--G--------------CCSTTCSCEEEEEC-SCHH
T ss_pred CCEEEEE-ECCC--CCHHHHHHHHHHCCCEEEEE------CCcc--c--------------cccccCCEEEECCC-CchH
Confidence 4689999 5862 25678999999999876653 2110 0 12668999999873 4432
Q ss_pred h-------hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh--ccccccccCCCCcccCCCCCCCeeeeCC-CCCcCCCCCc
Q 009814 377 V-------QGKILAAKYAREHRIPYLGICLGMQVAVIEF--ARSVLNLRDANSTEFDPNTKNPCVIFMP-EGSKTHMGGT 446 (524)
Q Consensus 377 ~-------eg~i~air~are~~iP~LGICLGmQll~ie~--gr~v~gl~~a~S~Ef~~~~~~pVi~l~~-e~~~~~~Ggt 446 (524)
. .+..++++.+.+.++|+||||+|||+|+.++ ++..-++.. ....|..+.. ..+.+|+||+
T Consensus 58 ~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a~~egg~~~~Lg~---------lgg~v~~~~~~~~~~~~~G~~ 128 (555)
T 1jvn_A 58 HFVDNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAGSVESPKSTGLNY---------IDFKLSRFDDSEKPVPEIGWN 128 (555)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEEETTBTTCCCCCS---------EEEEEEECCTTTSCSSEEEEE
T ss_pred hHhhhhhhccHHHHHHHHHHcCCcEEEEchhhhhhhhhhhcCCCccccCC---------CCcEEEECCcCCCCCccccce
Confidence 1 2457889999899999999999999999877 111111100 0111222110 1123555654
Q ss_pred ccccceeeEeccCCcccccccCCcceeeeeeccccccChhhH-HhhhcCCeEEEEEeCCC--CeEEEEEECCCcEEEEec
Q 009814 447 MRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMI-ARLENAGLSFTGKDETS--QRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 447 mrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v-~~l~~~Gl~~sg~~~dg--~~VE~iE~~~hp~f~vqy 523 (524)
++.+. . +++..+- ..... .+.|+|.+..... ..+-..|+.+.+.+..+ ..+|+++. .+++.|||
T Consensus 129 ------~v~~~-~-~L~~~l~-~~~~~--~~vHS~~~~~i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~--~~i~GvQF 195 (555)
T 1jvn_A 129 ------SCIPS-E-NLFFGLD-PYKRY--YFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNK--NNIFATQF 195 (555)
T ss_dssp ------CCCCC-T-TCCTTCC-TTSCE--EEEESEECBCCHHHHHHHHHTTCEEEEEEETTEEEEEEEEE--TTEEEESS
T ss_pred ------EEEEc-C-HHHhhCC-CCceE--EEEEEEEEEecccccccCCCCCEEEEEEcCCCCCeEEEEEe--CCEEEEEe
Confidence 22222 2 2222221 11112 3678888754210 00102356677776632 46999994 58999998
|
| >2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-10 Score=112.87 Aligned_cols=88 Identities=15% Similarity=0.248 Sum_probs=65.9
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHc---CCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCC
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHA---SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~a---g~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG 373 (524)
+++|+|+. |. .++.+..++|+.+ |+.+.. ++. + +.+.++|||+||||+.
T Consensus 3 ~~~I~Il~-~~---~~~~~~~~~l~~~~~~G~~~~~------~~~-----------~-------~~l~~~dglil~GG~~ 54 (227)
T 2abw_A 3 EITIGVLS-LQ---GDFEPHINHFIKLQIPSLNIIQ------VRN-----------V-------HDLGLCDGLVIPGGES 54 (227)
T ss_dssp CEEEEEEC-TT---SCCHHHHHHHHTTCCTTEEEEE------ECS-----------H-------HHHHTCSEEEECCSCH
T ss_pred CcEEEEEe-CC---CCcHHHHHHHHHhccCCeEEEE------EcC-----------c-------cccccCCEEEECCCcH
Confidence 47899994 54 3567778999988 754332 221 1 3466799999999984
Q ss_pred CC-----ch--hHHHHHHHHHHHc-CCCEEEEhHhHHHHHHHhcccc
Q 009814 374 NR-----GV--QGKILAAKYAREH-RIPYLGICLGMQVAVIEFARSV 412 (524)
Q Consensus 374 ~r-----g~--eg~i~air~are~-~iP~LGICLGmQll~ie~gr~v 412 (524)
+. .. .+..+.++.+.+. ++|+||||+|||+|+.++++.+
T Consensus 55 ~~~~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~~gg~~ 101 (227)
T 2abw_A 55 TTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIK 101 (227)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEEEECCC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHHhcCCc
Confidence 32 11 3568889999999 9999999999999999988764
|
| >2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-06 Score=90.00 Aligned_cols=129 Identities=13% Similarity=0.112 Sum_probs=78.0
Q ss_pred ccCCCEEEECCCCCC-------CchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhcccc-ccccCCCCcccCCCCCCCe
Q 009814 360 LKGADGILVPGGFGN-------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV-LNLRDANSTEFDPNTKNPC 431 (524)
Q Consensus 360 l~~~DGIllpGGfG~-------rg~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v-~gl~~a~S~Ef~~~~~~pV 431 (524)
..++||+||.|||=. +-+....+.+++++++++|+||||+|+|++.-++++-. ..++ ..|
T Consensus 109 ~~~~DglIITGsP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~---~K~--------- 176 (312)
T 2h2w_A 109 DRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELP---QKL--------- 176 (312)
T ss_dssp TCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEE---EEE---------
T ss_pred ccCcCEEEECCCCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCC---CCE---------
Confidence 367999999999843 23456778899999999999999999999776666522 1110 011
Q ss_pred eeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEE
Q 009814 432 VIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVW 511 (524)
Q Consensus 432 i~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~i 511 (524)
.|..+..+.+. +.+.+-.. +...--|-|.=++..+.+... .|+++-+.|..-. +.++
T Consensus 177 -----------------~Gv~~~~~~~~-~pL~~g~~--~~f~vphsr~~e~~~~~v~~~--pga~vLA~S~~~~-~q~~ 233 (312)
T 2h2w_A 177 -----------------SGVYKHRVAKD-SVLFRGHD--DFFWAPHSRYTEVKKEDIDKV--PELEILAESDEAG-VYVV 233 (312)
T ss_dssp -----------------EEEEEEEESSC-CGGGTTCC--SEEEEEEEEEEECCHHHHTTC--C-CEEEEEETTTE-EEEE
T ss_pred -----------------EEEEEEEEcCC-CccccCCC--CceEeeEEeccccCHHHccCC--CCCEEEEcCCCCc-ceEE
Confidence 12222333222 11111111 111112311123444444432 4899999887766 9999
Q ss_pred EECCCcEEEEec
Q 009814 512 TFNYKIAVLLNY 523 (524)
Q Consensus 512 E~~~hp~f~vqy 523 (524)
..++..++.||+
T Consensus 234 ~~~~~~~~~vQg 245 (312)
T 2h2w_A 234 ANKSERQIFVTG 245 (312)
T ss_dssp ECSSSSEEEECS
T ss_pred EecCCCEEEEEC
Confidence 998888999996
|
| >2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A | Back alignment and structure |
|---|
Probab=98.56 E-value=9.9e-07 Score=89.79 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=78.8
Q ss_pred ccCCCEEEECCCCCC-------CchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhcc-ccccccCCCCcccCCCCCCCe
Q 009814 360 LKGADGILVPGGFGN-------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR-SVLNLRDANSTEFDPNTKNPC 431 (524)
Q Consensus 360 l~~~DGIllpGGfG~-------rg~eg~i~air~are~~iP~LGICLGmQll~ie~gr-~v~gl~~a~S~Ef~~~~~~pV 431 (524)
..++||+||.|||=. +-+....+.+++++++++|+||||+|+|++.-++++ ....++ ..|+
T Consensus 97 ~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~---~K~~-------- 165 (301)
T 2vdj_A 97 NEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLK---EKMF-------- 165 (301)
T ss_dssp TSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEE---EEEE--------
T ss_pred ccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCC---CCEE--------
Confidence 467999999999843 234567788999999999999999999996666555 221111 1111
Q ss_pred eeeCCCCCcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEE
Q 009814 432 VIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVW 511 (524)
Q Consensus 432 i~l~~e~~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~i 511 (524)
|..+..+....+.+.+-. .+...--|-|.-++..+.+..+ .|+++-+.|..-. +.++
T Consensus 166 ------------------Gv~~~~~~~~~~pL~~g~--~~~f~~phsr~~~~~~~~v~~~--pga~vLA~S~~~~-~~~~ 222 (301)
T 2vdj_A 166 ------------------GVFEHEVREQHVKLLQGF--DELFFAVHSRHTEVRESDIREV--KELTLLANSEEAG-VHLV 222 (301)
T ss_dssp ------------------EEEEEEECCSSCGGGTTC--CSEEEEEEEEEEECCHHHHHTC--TTEEEEEEETTTE-EEEE
T ss_pred ------------------EEEEEEecCCCCccccCC--CCceEeeeEeccCcCHHHccCC--CCCEEEEeCCCCc-ceEE
Confidence 112222211001111111 1111112322223444555543 3899999987766 9999
Q ss_pred EECCCcEEEEec
Q 009814 512 TFNYKIAVLLNY 523 (524)
Q Consensus 512 E~~~hp~f~vqy 523 (524)
..++..++.||+
T Consensus 223 ~~~~~~~~~vQg 234 (301)
T 2vdj_A 223 IGQEGRQVFALG 234 (301)
T ss_dssp EEGGGTEEEECS
T ss_pred EecCCCEEEEEC
Confidence 998878999996
|
| >3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-06 Score=101.97 Aligned_cols=89 Identities=19% Similarity=0.248 Sum_probs=61.0
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCC--C
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG--N 374 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG--~ 374 (524)
+++|+|+ +|.... .-.++.+||+++|+.+.+. |+. ++.. .+ +.+.++|+|++||||. |
T Consensus 1047 ~pkVaIi-~~~G~N-~~~~~~~A~~~aG~~~~~v----~~~--dl~~-----~~-------~~l~~~d~lvlPGGfSygD 1106 (1303)
T 3ugj_A 1047 RPKVAVL-REQGVN-SHVEMAAAFHRAGFDAIDV----HMS--DLLG-----GR-------IGLGNFHALVACGGFSYGD 1106 (1303)
T ss_dssp CCEEEEE-ECTTCC-CHHHHHHHHHHTTCEEEEE----EHH--HHHT-----TS-------CCGGGCSEEEECCSCGGGG
T ss_pred CCEEEEE-ecCCcC-CHHHHHHHHHHhCCceEEE----eec--cccc-----Cc-------ccHhhCCEEEECCCCcchh
Confidence 5799999 574332 5578899999999876643 321 1100 00 2467899999999974 3
Q ss_pred C---ch---------hHHHHHHHHHH-HcCCCEEEEhHhHHHHH
Q 009814 375 R---GV---------QGKILAAKYAR-EHRIPYLGICLGMQVAV 405 (524)
Q Consensus 375 r---g~---------eg~i~air~ar-e~~iP~LGICLGmQll~ 405 (524)
- +. .++.++++.+. +.++|+||||+|||+|+
T Consensus 1107 ~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~ 1150 (1303)
T 3ugj_A 1107 VLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMS 1150 (1303)
T ss_dssp TTSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHH
T ss_pred hhccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHH
Confidence 1 10 34555666643 57899999999999999
|
| >3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.9e-07 Score=88.66 Aligned_cols=92 Identities=14% Similarity=-0.001 Sum_probs=63.9
Q ss_pred CeEEEEEeccCCC---cc-hHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCC
Q 009814 297 PVRIAMVGKYTGL---SD-AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 372 (524)
Q Consensus 297 ~v~IaiVGkY~~~---~d-ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGf 372 (524)
..+|+++ +|..- .+ ...|+.++|+..|+++.+. +-.+- ++ .+..+.+.++|+|++|||-
T Consensus 27 ~~~i~~I-p~As~~~~~~~~~~s~~~a~~~lG~~v~~~------~i~~~-------~~---~~~~~~l~~ad~I~l~GG~ 89 (206)
T 3l4e_A 27 GKTVTFI-PTASTVEEVTFYVEAGKKALESLGLLVEEL------DIATE-------SL---GEITTKLRKNDFIYVTGGN 89 (206)
T ss_dssp TCEEEEE-CGGGGGCSCCHHHHHHHHHHHHTTCEEEEC------CTTTS-------CH---HHHHHHHHHSSEEEECCSC
T ss_pred CCEEEEE-CCCCCCCCHHHHHHHHHHHHHHcCCeEEEE------EecCC-------Ch---HHHHHHHHhCCEEEECCCC
Confidence 3689999 58632 12 4478999999999865432 11110 11 1112457899999999953
Q ss_pred CCC-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 373 GNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 373 G~r-----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
-.+ ...|..++++.+.++++|++|||.|||+|+
T Consensus 90 ~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~ 127 (206)
T 3l4e_A 90 TFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITS 127 (206)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHHHTTS
T ss_pred HHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHHHHhc
Confidence 222 125788999999999999999999999997
|
| >1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-07 Score=91.23 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=62.2
Q ss_pred CeEEEEEeccCC---Ccc-hHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCC
Q 009814 297 PVRIAMVGKYTG---LSD-AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 372 (524)
Q Consensus 297 ~v~IaiVGkY~~---~~d-ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGf 372 (524)
..+|+++ +|.. ..+ ...|+.++|+..|+++... .. .+ + ..+.+.++|+|++|||-
T Consensus 31 ~~~i~iI-~~a~~~~~~~~~~~~~~~al~~lG~~~~~v------~~--~~------d------~~~~l~~ad~I~lpGG~ 89 (229)
T 1fy2_A 31 RRSAVFI-PFAGVTQTWDEYTDKTAEVLAPLGVNVTGI------HR--VA------D------PLAAIEKAEIIIVGGGN 89 (229)
T ss_dssp CCEEEEE-CTTCCSSCHHHHHHHHHHHHGGGTCEEEET------TS--SS------C------HHHHHHHCSEEEECCSC
T ss_pred CCeEEEE-ECCCCCCCHHHHHHHHHHHHHHCCCEEEEE------ec--cc------c------HHHHHhcCCEEEECCCc
Confidence 4689999 5863 122 3467899999999754432 10 00 0 12567889999999953
Q ss_pred CCC-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 373 GNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 373 G~r-----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
-.. ...|..++++.+.++++|++|||.|||+|+
T Consensus 90 ~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~l~ 127 (229)
T 1fy2_A 90 TFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLAC 127 (229)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTS
T ss_pred HHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHHHhhc
Confidence 322 114678899988888999999999999998
|
| >1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00014 Score=68.35 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=63.4
Q ss_pred CeEEEEEeccCCCcc-hHHHHHHHHHHcCCceeEEeeeEEeeCCC-cccc----ccCCChhhhhHHHHh--ccCCCEEEE
Q 009814 297 PVRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPACD-LEDA----TEKENPDAYKAAWKL--LKGADGILV 368 (524)
Q Consensus 297 ~v~IaiVGkY~~~~d-ay~SI~~aL~~ag~~~~v~v~i~~i~s~~-le~~----~~~~~p~~y~~~~~~--l~~~DGIll 368 (524)
..+|+++- +..+.+ ......+.|+.+|+++.+. ..+... +... .+..+. . .+. ..++|+|+|
T Consensus 23 ~~kV~ill-~~g~~~~e~~~~~~~l~~ag~~v~~v----s~~~~~~v~~~~g~~~v~~~~-~----l~~~~~~~~D~liv 92 (193)
T 1oi4_A 23 SKKIAVLI-TDEFEDSEFTSPADEFRKAGHEVITI----EKQAGKTVKGKKGEASVTIDK-S----IDEVTPAEFDALLL 92 (193)
T ss_dssp CCEEEEEC-CTTBCTHHHHHHHHHHHHTTCEEEEE----ESSTTCEEECTTSSCEEECCE-E----GGGCCGGGCSEEEE
T ss_pred CCEEEEEE-CCCCCHHHHHHHHHHHHHCCCEEEEE----ECCCCcceecCCCCeEEECCC-C----hHHCCcccCCEEEE
Confidence 45788883 544443 3566789999999776543 111110 1000 000000 0 112 246899999
Q ss_pred CCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH
Q 009814 369 PGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 369 pGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~ie 407 (524)
|||+|.. ..+..++.++.+.++++|++|||.|.|+|+-+
T Consensus 93 pGG~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 93 PGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp CCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred CCCcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 9997643 23567889999999999999999999998843
|
| >3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0019 Score=58.79 Aligned_cols=99 Identities=14% Similarity=0.255 Sum_probs=61.3
Q ss_pred eEEEEEeccCCCcc-hHHHHHHHHHHcCCceeEEee-eEEeeCCC-ccccccCCChhhhhHHHHhc--cCCCEEEECCCC
Q 009814 298 VRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLV-IDWIPACD-LEDATEKENPDAYKAAWKLL--KGADGILVPGGF 372 (524)
Q Consensus 298 v~IaiVGkY~~~~d-ay~SI~~aL~~ag~~~~v~v~-i~~i~s~~-le~~~~~~~p~~y~~~~~~l--~~~DGIllpGGf 372 (524)
.+|+++- |....+ ......+.|+.+|+++.+.-. -..+.+.. +. +..+. ..+.+ ..+|.|+||||+
T Consensus 3 ~ki~il~-~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~---i~~~~-----~~~~~~~~~~D~livpGG~ 73 (168)
T 3l18_A 3 MKVLFLS-ADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYS---VNVDL-----TFEEVDPDEFDALVLPGGK 73 (168)
T ss_dssp CEEEEEC-CTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCE---EEECE-----EGGGCCGGGCSEEEECCBS
T ss_pred cEEEEEe-CCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcE---EeccC-----ChhHCCHhhCCEEEECCCc
Confidence 4677773 554443 244567899999877655310 00111111 00 00000 01222 358999999998
Q ss_pred CCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 373 GNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 373 G~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
|.. ..+..++.++.+.++++|+.+||-|.++|+
T Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La 109 (168)
T 3l18_A 74 APEIVRLNEKAVMITRRMFEDDKPVASICHGPQILI 109 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHH
T ss_pred CHHHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHH
Confidence 642 335678889999999999999999999987
|
| >3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0047 Score=60.64 Aligned_cols=171 Identities=15% Similarity=0.157 Sum_probs=95.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCcc----cc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNY----ER 76 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~y----er 76 (524)
+|-||||| .=++.||=++++.|.+.|+.+|++|...| | .+.|-. ..+| .|-|...+ .+
T Consensus 21 ~k~i~Itg-T~t~vGKT~vs~gL~~~L~~~G~~V~~fK--P-----------v~~g~~--~~~~--~~~D~~~~~~~~~~ 82 (242)
T 3qxc_A 21 GHMLFISA-TNTNAGKTTCARLLAQYCNACGVKTILLK--P-----------IETGVN--DAIN--HSSDAHLFLQDNRL 82 (242)
T ss_dssp CEEEEEEE-SSTTSSHHHHHHHHHHHHHHTTCCEEEEC--C-----------EECSCC--TTTC--CCSHHHHHHHHHHT
T ss_pred CcEEEEEe-CCCCCcHHHHHHHHHHHHHhCCCceEEEe--e-----------eecCCc--ccCC--CCchHHHHHHHHHH
Confidence 47899986 56999999999999999999999999988 2 222210 0001 22233333 33
Q ss_pred cc-CCCCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccccc-
Q 009814 77 FM-DIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDI- 154 (524)
Q Consensus 77 f~-~~~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdi- 154 (524)
+. +.....-+-++--.-.+--+..++.|.+ +. ---++|++.+.+++. ++|++|||==|-+.+.
T Consensus 83 ~~~g~~~~~~~p~~~~~p~sp~~aa~~~g~~--~~-----i~~~~I~~~~~~l~~--------~~D~vlIEGagGl~~pl 147 (242)
T 3qxc_A 83 LDRSLTLKDISFYRYHKVSAPLIAQQEEDPN--AP-----IDTDNLTQRLHNFTK--------TYDLVIVEGAGGLCVPI 147 (242)
T ss_dssp TCTTCCHHHHCCEECSSSSCHHHHHHHHCTT--CC-----CCHHHHHHHHHHGGG--------TCSEEEEECCSCTTCBS
T ss_pred HhCCCChHHeeeEEECCCCChHHHHHHcCCC--Cc-----CCHHHHHHHHHHHHh--------cCCEEEEECCCCccccc
Confidence 33 2221000000000000012223334432 11 134788888888863 6899999976655542
Q ss_pred -CcchHHHHHHHhhhhcCCCCEEEEEeeeeeeecC-CCccccCCchhhHHHhhcCCCcccEEEEecC
Q 009814 155 -ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNV-VGEQKTKPTQHSVRGLRGQGLTPNILACRST 219 (524)
Q Consensus 155 -es~pf~ea~rq~~~~~~~~n~~~ih~~~vp~~~~-~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~ 219 (524)
+..-..+-++++... ++.| ... .|- -.-+.-+++.|++.|+. .++|+-..
T Consensus 148 ~~~~~~adlA~~l~~p-----VILV-------~~~~lg~--i~~~~lt~~~l~~~g~~-~GvIlN~v 199 (242)
T 3qxc_A 148 TLEENMLDFALKLKAK-----MLLI-------SHDNLGL--INDCLLNDFLLKSHQLD-YKIAINLK 199 (242)
T ss_dssp SSSCBHHHHHHHHTCE-----EEEE-------ECCSTTH--HHHHHHHHHHHHTSSSC-EEEEECCC
T ss_pred cccchHHHHHHHcCCC-----EEEE-------EcCCCcH--HHHHHHHHHHHHhCCCC-EEEEEeCC
Confidence 333445666666533 2221 211 121 12456677888899999 89888644
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0046 Score=56.92 Aligned_cols=97 Identities=15% Similarity=0.213 Sum_probs=70.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||-|.|+++ -.|.||=.+|+.++..|..+|++|.++..||.-|.- .|+..
T Consensus 1 M~vi~v~s~-kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~-----------------------------~~~~~ 50 (206)
T 4dzz_A 1 MKVISFLNP-KGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT-----------------------------NWSKA 50 (206)
T ss_dssp CEEEEECCS-STTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH-----------------------------HHHTT
T ss_pred CeEEEEEeC-CCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH-----------------------------HHHhc
Confidence 788889876 788999999999999999999999999999643321 01110
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
. .. .+.++|--.+.+.+.+..+. ..+|++||+.++..++ ...
T Consensus 51 ~---~~-----------------------~~~~~~~~~~~l~~~l~~l~--------~~yD~viiD~~~~~~~----~~~ 92 (206)
T 4dzz_A 51 G---KA-----------------------AFDVFTAASEKDVYGIRKDL--------ADYDFAIVDGAGSLSV----ITS 92 (206)
T ss_dssp S---CC-----------------------SSEEEECCSHHHHHTHHHHT--------TTSSEEEEECCSSSSH----HHH
T ss_pred C---CC-----------------------CCcEEecCcHHHHHHHHHhc--------CCCCEEEEECCCCCCH----HHH
Confidence 0 00 05566665688888888875 3699999999998854 444
Q ss_pred HHHHH
Q 009814 161 EALGQ 165 (524)
Q Consensus 161 ea~rq 165 (524)
.+++.
T Consensus 93 ~~l~~ 97 (206)
T 4dzz_A 93 AAVMV 97 (206)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 45443
|
| >2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0078 Score=56.30 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=60.9
Q ss_pred EEEEEeccCCCcc-hHHHHHHHHHHcCCceeEEeeeEEeeCC-Cccc-cccCCChhhhhHHHHhc---cCCCEEEECCCC
Q 009814 299 RIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPAC-DLED-ATEKENPDAYKAAWKLL---KGADGILVPGGF 372 (524)
Q Consensus 299 ~IaiVGkY~~~~d-ay~SI~~aL~~ag~~~~v~v~i~~i~s~-~le~-~~~~~~p~~y~~~~~~l---~~~DGIllpGGf 372 (524)
+|+++- |..+.+ ......+.|+.+++++.+. ..... .+.. ....-.|. . ..+.+ ..+|.|+||||+
T Consensus 5 ~v~ill-~~g~~~~e~~~~~~~l~~ag~~v~~v----s~~~~~~v~~~~g~~v~~d-~--~l~~~~~~~~~D~livpGG~ 76 (197)
T 2rk3_A 5 RALVIL-AKGAEEMETVIPVDVMRRAGIKVTVA----GLAGKDPVQCSRDVVICPD-A--SLEDAKKEGPYDVVVLPGGN 76 (197)
T ss_dssp EEEEEE-CTTCCHHHHHHHHHHHHHTTCEEEEE----ETTCSSCEECTTSCEECCS-E--EHHHHHTTCCCSEEEECCCH
T ss_pred EEEEEE-CCCCcHHHHHHHHHHHHHCCCEEEEE----EcCCCCccccCCCCEEeCC-c--CHHHcCCccCCCEEEECCCc
Confidence 567663 544443 2455678999999766543 11110 0110 00000010 0 11233 679999999997
Q ss_pred CCC----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 373 GNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 373 G~r----g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
+.. ..+..++.++.+.++++|+.+||-|-++|+-
T Consensus 77 ~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~ 114 (197)
T 2rk3_A 77 LGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLA 114 (197)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHH
T ss_pred hhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHH
Confidence 532 2356788899999999999999999998883
|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0084 Score=57.96 Aligned_cols=169 Identities=15% Similarity=0.203 Sum_probs=93.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||-||||| .-|+.||=++++.|.+.|+.+|++|...| |.++|-.+ .+|| ..|-|.-. +..+.
T Consensus 4 mk~i~Itg-t~t~vGKT~vt~~L~~~l~~~G~~V~~~K-------------Pv~~g~~~-~~~~-~~~~D~~~--~~~~~ 65 (228)
T 3of5_A 4 MKKFFIIG-TDTEVGKTYISTKLIEVCEHQNIKSLCLK-------------PVASGQSQ-FSEL-CEDVESIL--NAYKH 65 (228)
T ss_dssp CEEEEEEE-SSSSSCHHHHHHHHHHHHHHTTCCEEEEC-------------SEEESBCS-SSSS-BHHHHHHH--HHTTT
T ss_pred CcEEEEEe-CCCCCCHHHHHHHHHHHHHHCCCeeEEec-------------ceeecCcc-CCCC-CChHHHHH--HhcCC
Confidence 68899986 56999999999999999999999999966 45566322 1222 11112211 22222
Q ss_pred CCCCCCcccchHhh----HHHHhhhhcCCCCCCeeEEcccchHHHHHHHHH-HhcccCCCCCCCCcEEEEeeCccccc--
Q 009814 81 KLTRDNNITTGKIY----QSVIDKERKGDYLGKTVQVVPHITDEIQDWIER-VAMIPVDGKEGPVDVCVIELGGTIGD-- 153 (524)
Q Consensus 81 ~~~~~~n~t~g~iy----~~vi~ker~g~ylg~tvqviphit~ei~~~i~~-~~~~~~d~~~~~~d~~i~eiggtvgd-- 153 (524)
.++.+ ++ ..-.| .--+..++.|. +---++|++.+.+ ++ .++|++|||--|-+.+
T Consensus 66 ~~~~~-~~-~~~~~~~p~sp~~aa~~~~~---------~i~~~~i~~~~~~~l~--------~~~D~vlIEgaggl~~p~ 126 (228)
T 3of5_A 66 KFTAA-EI-NLISFNQAVAPHIIAAKTKV---------DISIENLKQFIEDKYN--------QDLDILFIEGAGGLLTPY 126 (228)
T ss_dssp SSCHH-HH-CSEEESSSSCHHHHHHHTTC---------CCCHHHHHHHHHGGGG--------SSCSEEEEEEEEETTCBS
T ss_pred CCChh-hE-EEEEECCCCCHHHHHHHcCC---------CCCHHHHHHHHHHHHH--------ccCCEEEEECCCcccccc
Confidence 21100 00 00001 00111122221 1123778888887 65 3789999996554443
Q ss_pred cCcchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecC
Q 009814 154 IESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRST 219 (524)
Q Consensus 154 ies~pf~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~ 219 (524)
-+..-..+-++++... ++.| --.+ .|- -.-+..+++.++..|+..-++|+-..
T Consensus 127 ~~~~~~adla~~l~~p-----viLV-----~~~~-~~~--i~~~~~~~~~l~~~~~~i~GvIlN~~ 179 (228)
T 3of5_A 127 SDHTTQLDLIKALQIP-----VLLV-----SAIK-VGC--INHTLLTINELNRHNIKLAGWIANCN 179 (228)
T ss_dssp SSSCBHHHHHHHHTCC-----EEEE-----EECS-TTH--HHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred ccchhHHHHHHHcCCC-----EEEE-----EcCC-cch--HHHHHHHHHHHHhCCCcEEEEEEECc
Confidence 1233345555665422 2221 1111 122 22355677778899999988887543
|
| >4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0049 Score=57.63 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=38.8
Q ss_pred cCCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.++|+|++|||+|.. ..+..++.++.+.++++|+.+||-|-++|+
T Consensus 68 ~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La 115 (177)
T 4hcj_A 68 VEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAGIGSGVVIMA 115 (177)
T ss_dssp GGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEEETTHHHHHH
T ss_pred hHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEEEecccHHHHH
Confidence 568999999999864 335678899999999999999999998876
|
| >2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.013 Score=55.39 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=59.8
Q ss_pred EEEEEeccCCCcc-hHHHHHHHHHHcCCceeEEee-eE---EeeCCC-ccccccCCChhhhhHHHHh--ccCCCEEEECC
Q 009814 299 RIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLV-ID---WIPACD-LEDATEKENPDAYKAAWKL--LKGADGILVPG 370 (524)
Q Consensus 299 ~IaiVGkY~~~~d-ay~SI~~aL~~ag~~~~v~v~-i~---~i~s~~-le~~~~~~~p~~y~~~~~~--l~~~DGIllpG 370 (524)
+|+++- +..+.+ ......+.|+.+|+++.+.-. -. .+.+.. +. +..+. ..+. ..++|+|+|||
T Consensus 4 kV~ill-~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~---v~~~~-----~l~~~~~~~~D~livpG 74 (205)
T 2ab0_A 4 SALVCL-APGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVK---LLADA-----PLVEVADGEYDVIVLPG 74 (205)
T ss_dssp EEEEEE-CTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCE---EECSE-----EHHHHTTSCCSEEEECC
T ss_pred EEEEEE-cCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeE---EecCC-----CHHHCCcccCCEEEECC
Confidence 566663 444432 244567899999977654310 00 111111 00 00000 0122 35799999999
Q ss_pred CCCCC----chhHHHHHHHHHHHcCCCEEEEhHhH-HHHH
Q 009814 371 GFGNR----GVQGKILAAKYAREHRIPYLGICLGM-QVAV 405 (524)
Q Consensus 371 GfG~r----g~eg~i~air~are~~iP~LGICLGm-Qll~ 405 (524)
|++.. ..+..++.++.+.++++|+.+||-|- ++|+
T Consensus 75 G~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa 114 (205)
T 2ab0_A 75 GIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLV 114 (205)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTT
T ss_pred CcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHH
Confidence 97532 23567788999999999999999999 8887
|
| >4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.027 Score=52.31 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=58.7
Q ss_pred EEEEEeccCCCcc-hHHHHHHHHHHcCCceeEEeeeEEeeC-CCccc-cccCCChhhhhHHHHhc--cCCCEEEECCCCC
Q 009814 299 RIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPA-CDLED-ATEKENPDAYKAAWKLL--KGADGILVPGGFG 373 (524)
Q Consensus 299 ~IaiVGkY~~~~d-ay~SI~~aL~~ag~~~~v~v~i~~i~s-~~le~-~~~~~~p~~y~~~~~~l--~~~DGIllpGGfG 373 (524)
+|+++= +..+.+ ......+.|+.+|+++.+. ..+. ..+.. ....-.|.. ..+.+ ..+|.|+||||.+
T Consensus 7 kv~ill-~~g~~~~e~~~~~~~l~~ag~~v~~~----s~~~~~~v~~~~g~~i~~d~---~l~~~~~~~~D~livpGG~~ 78 (190)
T 4e08_A 7 SALVIL-APGAEEMEFIIAADVLRRAGIKVTVA----GLNGGEAVKCSRDVQILPDT---SLAQVASDKFDVVVLPGGLG 78 (190)
T ss_dssp EEEEEE-CTTCCHHHHHHHHHHHHHTTCEEEEE----ESSSSSCEECTTSCEEECSE---ETGGGTTCCCSEEEECCCHH
T ss_pred EEEEEE-CCCchHHHHHHHHHHHHHCCCEEEEE----ECCCCcceecCCCcEEECCC---CHHHCCcccCCEEEECCCCh
Confidence 566552 433433 3455678999999766543 1111 11110 000000000 01222 3689999999953
Q ss_pred -CC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 374 -NR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 374 -~r---g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
.. ..+..++.++.+.++++|+.+||-|-++|+-
T Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~ 115 (190)
T 4e08_A 79 GSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAK 115 (190)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHH
T ss_pred HHHHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHH
Confidence 22 2346788899999999999999999998873
|
| >3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.022 Score=54.04 Aligned_cols=48 Identities=6% Similarity=-0.173 Sum_probs=40.0
Q ss_pred hccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 359 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~r-----g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
.+.++|.|+||||.+.. ..+..++.++.+.++++++.+||-|-.+|+-
T Consensus 71 ~~~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~ 123 (209)
T 3er6_A 71 SFDFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAK 123 (209)
T ss_dssp GCSCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHH
T ss_pred ccCCCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHH
Confidence 45679999999998643 2457788999999999999999999988873
|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.02 Score=56.34 Aligned_cols=167 Identities=19% Similarity=0.239 Sum_probs=90.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||-||||| .=|+.||=++++.|.+.|+.+|++|...| |.+.|-. .|+ -|.....+..+.
T Consensus 26 m~~i~Itg-t~t~vGKT~vt~gL~~~l~~~G~~V~~fK-------------Pv~~g~~---~~~----~D~~~~~~~~g~ 84 (251)
T 3fgn_A 26 MTILVVTG-TGTGVGKTVVCAALASAARQAGIDVAVCK-------------PVQTGTA---RGD----DDLAEVGRLAGV 84 (251)
T ss_dssp CEEEEEEE-SSTTSCHHHHHHHHHHHHHHTTCCEEEEE-------------EEECCGG---GTC----CHHHHHHHHHCC
T ss_pred CCEEEEEe-CCCCCcHHHHHHHHHHHHHHCCCeEEEEe-------------eeecCCC---CCC----HHHHHHHHHcCC
Confidence 67888886 67999999999999999999999999988 2233310 111 222222232222
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccccc--Cc-c
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDI--ES-M 157 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdi--es-~ 157 (524)
... .|-++--.-.+--+..++.|.. . ---++|++.+.+++ .++|++|||==|-+.|- +. .
T Consensus 85 ~~~-~~~~~~~~p~sP~~aa~~~~~~---~-----~~~~~i~~~~~~l~--------~~~D~vlIEGagGl~~pl~~~~~ 147 (251)
T 3fgn_A 85 TQL-AGLARYPQPMAPAAAAEHAGMA---L-----PARDQIVRLIADLD--------RPGRLTLVEGAGGLLVELAEPGV 147 (251)
T ss_dssp CEE-EEEEECSSSSCHHHHHHHTTCC---C-----CCHHHHHHHHHTTC--------CTTCEEEEECSSSTTCEEETTTE
T ss_pred CCC-CCCeeECCCCChHHHHHHcCCC---C-----CCHHHHHHHHHHHH--------hcCCEEEEECCCCCcCCcCcccc
Confidence 111 0000000000111122223320 0 11366788777764 47899999976555431 21 2
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEec
Q 009814 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRS 218 (524)
Q Consensus 158 pf~ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~ 218 (524)
-..+-++++... ++. |--.+ .|-. .-+.-+++.++..|+...++|+-.
T Consensus 148 ~~adla~~l~~p-----VIL-----V~~~~-~g~i--~~~~lt~~~l~~~g~~i~GvIlN~ 195 (251)
T 3fgn_A 148 TLRDVAVDVAAA-----ALV-----VVTAD-LGTL--NHTKLTLEALAAQQVSCAGLVIGS 195 (251)
T ss_dssp EHHHHHHHTTCE-----EEE-----EECSS-TTHH--HHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred hHHHHHHHcCCC-----EEE-----EEcCC-CccH--HHHHHHHHHHHhCCCCEEEEEEEC
Confidence 334555555432 221 11111 1222 235567777888999999999854
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.018 Score=53.59 Aligned_cols=44 Identities=20% Similarity=0.071 Sum_probs=36.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-ccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-LNTD 46 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy-ln~d 46 (524)
|+.|.++| .||-||-..+..|-..|+.+|++|..+|.||. .++|
T Consensus 4 ~~~i~i~G--~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~~diD 48 (169)
T 1xjc_A 4 MNVWQVVG--YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPA 48 (169)
T ss_dssp CCEEEEEC--CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC------
T ss_pred CEEEEEEC--CCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCCcccc
Confidence 56788898 78999999999999999999999999999997 5666
|
| >2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0094 Score=55.15 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=60.7
Q ss_pred CeEEEEEeccCCCcc-hHHHHHHHHHHcCCceeEEeeeEEeeCCCccc------cccCCChhhhhHHHHhc--cCCCEEE
Q 009814 297 PVRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPACDLED------ATEKENPDAYKAAWKLL--KGADGIL 367 (524)
Q Consensus 297 ~v~IaiVGkY~~~~d-ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~------~~~~~~p~~y~~~~~~l--~~~DGIl 367 (524)
..+|+++ -|..+.+ ......+.|+.+++++.+. ......+.. ....-.+. . ..+.+ ..+|.|+
T Consensus 9 ~~~v~il-~~~g~~~~e~~~~~~~l~~ag~~v~~v----s~~~~~v~~~~~~~~~g~~v~~~-~--~~~~~~~~~~D~li 80 (190)
T 2vrn_A 9 GKKIAIL-AADGVEEIELTSPRAAIEAAGGTTELI----SLEPGEIQSMKGDIEPQEKYRVD-H--VVSEVQVSDYDGLL 80 (190)
T ss_dssp TCEEEEE-CCTTCBHHHHHHHHHHHHHTTCEEEEE----ESSSSEEEEEETTTEEEEEEECS-E--EGGGCCGGGCSEEE
T ss_pred CCEEEEE-eCCCCCHHHHHHHHHHHHHCCCEEEEE----ecCCCccccccccccCCcEEeCC-C--ChhhCChhhCCEEE
Confidence 3578888 3654443 2445678899998776543 111000100 00000000 0 01222 4689999
Q ss_pred ECCCCCCC----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 368 VPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 368 lpGGfG~r----g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
||||++.. ..+..++.++.+.++++|+.+||-|-++|+-
T Consensus 81 vpGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~ 123 (190)
T 2vrn_A 81 LPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSE 123 (190)
T ss_dssp ECCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHH
T ss_pred ECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHh
Confidence 99997432 3456788999999999999999999998883
|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.11 Score=49.66 Aligned_cols=41 Identities=29% Similarity=0.453 Sum_probs=37.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+|.|.|+++ -.|.||=.+|+.|+..|..+|++|.++.+||.
T Consensus 2 ~~~I~v~s~-kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 2 VRTITVASG-KGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp CEEEEEEES-SSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECC-CCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 478888876 57999999999999999999999999999995
|
| >3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.028 Score=53.37 Aligned_cols=44 Identities=18% Similarity=0.107 Sum_probs=38.4
Q ss_pred CCCEEEECCCCCCC--chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 362 GADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 362 ~~DGIllpGGfG~r--g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.+|.|+||||.+.+ ..+..++.++.+.++++|+.+||-|-.+|+
T Consensus 74 ~~D~livpGG~~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La 119 (212)
T 3efe_A 74 SKDLLILPGGTTWSEEIHQPILERIGQALKIGTIVAAICGATDALA 119 (212)
T ss_dssp TTCEEEECCCSCTTSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHH
T ss_pred CCCEEEECCCCccccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHH
Confidence 78999999998764 345678899999999999999999998877
|
| >2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0087 Score=55.54 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=37.1
Q ss_pred CCCEEEECCCCCCC--chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 362 GADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 362 ~~DGIllpGGfG~r--g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
++|.|+||||.+.. ..+..+..++.+.++++|+.+||-|-++|+
T Consensus 63 ~~D~livpGG~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La 108 (188)
T 2fex_A 63 DIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAASALG 108 (188)
T ss_dssp TCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEEEETHHHHHHH
T ss_pred cCCEEEECCCCcccccccHHHHHHHHHHHHCCCEEEEECHHHHHHH
Confidence 68999999997642 234567889999999999999999999887
|
| >3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.018 Score=52.62 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=38.0
Q ss_pred cCCCEEEECCC--C-CCC------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 361 KGADGILVPGG--F-GNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 361 ~~~DGIllpGG--f-G~r------g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
.++|.|+|||| + +.. ..+..++.++.+.++++|+.+||-|-++|+-
T Consensus 65 ~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~ 119 (175)
T 3cne_A 65 DEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDF 119 (175)
T ss_dssp GGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHH
T ss_pred ccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHH
Confidence 56899999999 6 542 2345778899999999999999999998883
|
| >3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.015 Score=56.92 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=39.9
Q ss_pred cCCCEEEECCCCCC---------------CchhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 361 KGADGILVPGGFGN---------------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 361 ~~~DGIllpGGfG~---------------rg~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
.++|+|+||||+|. +..+...+.++.+.++++|+.+||-|-++|+-+-
T Consensus 106 ~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 106 EEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp GGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred ccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 46899999999863 2235678899999999999999999999988553
|
| >3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.035 Score=52.79 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=38.7
Q ss_pred cCCCEEEECCCCCCC-chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 361 KGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 361 ~~~DGIllpGGfG~r-g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
.++|.|+||||.|.. ..+..++.++.+.++++|+.+||-|-++|+-
T Consensus 62 ~~~D~livpGG~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~ 108 (206)
T 3f5d_A 62 ANFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPIAAICGAVDFLAK 108 (206)
T ss_dssp SCCSEEEECCBSCCCCCCHHHHHHHHHHHHTTCCEEEETHHHHHHHH
T ss_pred cCCCEEEEcCCCChhhcCHHHHHHHHHHHHcCCEEEEECHHHHHHHH
Confidence 368999999998754 3456788899999999999999999998873
|
| >3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.035 Score=52.38 Aligned_cols=46 Identities=20% Similarity=0.088 Sum_probs=39.8
Q ss_pred ccCCCEEEECCCCCCC--chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 360 LKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 360 l~~~DGIllpGGfG~r--g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
..++|.|+||||.+.+ . +..++.++.+.++++++.+||-|-.+|+-
T Consensus 69 ~~~~D~livpGG~~~~~~~-~~l~~~l~~~~~~g~~iaaIC~G~~~La~ 116 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLKY-PELDRLLNDCAAHGMALGGLWNGAWFLGR 116 (202)
T ss_dssp GTTCSEEEEECCTTCCSCC-TTHHHHHHHHHHHTCEEEEETTHHHHHHH
T ss_pred CCCCCEEEEeCCCchhhcc-HHHHHHHHHHHhhCCEEEEECHHHHHHHH
Confidence 4578999999998764 4 77888999999999999999999998873
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.25 Score=52.25 Aligned_cols=41 Identities=27% Similarity=0.473 Sum_probs=37.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-CCeeEEeeeccccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPYLN 44 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~-g~~v~~~k~dpyln 44 (524)
+.|.++| .+|.||=.+++.|+..|+.+ |++|.++..|||-+
T Consensus 101 ~vI~ivG--~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 101 AVVLMAG--LQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP 142 (433)
T ss_dssp EEEEEEC--STTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSST
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 5678885 49999999999999999999 99999999999853
|
| >2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.018 Score=59.61 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=36.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+|-|||||==. ++||+.++..|-+.|+.+|++|..++.-.+
T Consensus 169 ~~ri~v~GTDt-~vGKt~t~~~L~~~l~~~G~~v~~v~tgqt 209 (350)
T 2g0t_A 169 IKVVGVFGTDC-VVGKRTTAVQLWERALEKGIKAGFLATGQT 209 (350)
T ss_dssp SEEEEEEESSS-SSSHHHHHHHHHHHHHHTTCCEEEEECSHH
T ss_pred ceEEEEecCCC-CccCccHHHHHHHHHHhcCCeEEEEccCce
Confidence 36799999777 599999999999999999999999887665
|
| >2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.23 Score=48.80 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=35.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|-|.|+++ -.|.||=.+|+.|+..|..+|++|.++.+||+
T Consensus 5 kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 44 (286)
T 2xj4_A 5 RVIVVGNE-KGGAGKSTIAVHLVTALLYGGAKVAVIDLDLR 44 (286)
T ss_dssp EEEEECCS-SSCTTHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEEcC-CCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 57777764 57899999999999999999999999999994
|
| >1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.023 Score=54.76 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=39.5
Q ss_pred cCCCEEEECCCCCCC--------------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH
Q 009814 361 KGADGILVPGGFGNR--------------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 361 ~~~DGIllpGGfG~r--------------g~eg~i~air~are~~iP~LGICLGmQll~ie 407 (524)
.++|+|+||||+|.. ..+..++.++.+.++++|+.+||-|-++|+-+
T Consensus 89 ~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 149 (232)
T 1vhq_A 89 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI 149 (232)
T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH
T ss_pred ccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHH
Confidence 468999999998751 13567889999999999999999999998855
|
| >3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.075 Score=53.58 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=68.7
Q ss_pred HHHHHHHHhhcCCCCCeEEEEEeccCC-CcchHH-HHHHHHHHcCCc-eeEEeeeEEeeCCCccccccCCChhhhhHHHH
Q 009814 282 KEWTSRAEICDGLHEPVRIAMVGKYTG-LSDAYL-SILKALLHASVD-LRKKLVIDWIPACDLEDATEKENPDAYKAAWK 358 (524)
Q Consensus 282 ~~W~~lv~~~~~~~~~v~IaiVGkY~~-~~day~-SI~~aL~~ag~~-~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~ 358 (524)
.-|+.|++.... ...+|+++. +-. ..+.|. ...++|+..|+. +.+. +-.+.+.. .+| +..+
T Consensus 43 ~i~~~~v~lagg--~~~~I~~Ip-tAs~~~~~~~~~~~~~f~~lG~~~v~~L------~i~~r~~a---~~~----~~~~ 106 (291)
T 3en0_A 43 EILQTFWSRSGG--NDAIIGIIP-SASREPLLIGERYQTIFSDMGVKELKVL------DIRDRAQG---DDS----GYRL 106 (291)
T ss_dssp HHHHHHHHHTTG--GGCEEEEEC-TTCSSHHHHHHHHHHHHHHHCCSEEEEC------CCCSGGGG---GCH----HHHH
T ss_pred HHHHHHHHHcCC--CCCeEEEEe-CCCCChHHHHHHHHHHHHHcCCCeeEEE------EecCcccc---CCH----HHHH
Confidence 456777777653 246899994 532 223443 356788888873 3321 11111100 111 1234
Q ss_pred hccCCCEEEECCCCCCC-----chhHHHHHHHHHHHcC-CCEEEEhHhHHHHH
Q 009814 359 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHR-IPYLGICLGMQVAV 405 (524)
Q Consensus 359 ~l~~~DGIllpGGfG~r-----g~eg~i~air~are~~-iP~LGICLGmQll~ 405 (524)
.+.++|+|+++||--.+ .-.+..++++.+.+++ +|+.|.|-|.-+|+
T Consensus 107 ~l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~ 159 (291)
T 3en0_A 107 FVEQCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGAAVMG 159 (291)
T ss_dssp HHHHCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTS
T ss_pred HHhcCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhh
Confidence 67899999999974332 2257889999999999 99999999998876
|
| >1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.029 Score=53.28 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=38.6
Q ss_pred cCCCEEEECCCCCCC----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~r----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..+|+|+||||.+.. ..+..++.++.+.++++|+.+||-|-++|+
T Consensus 88 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La 136 (224)
T 1u9c_A 88 HGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLV 136 (224)
T ss_dssp SSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGT
T ss_pred hhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHH
Confidence 478999999998752 345778899999999999999999999877
|
| >3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.09 Score=54.63 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=61.4
Q ss_pred CeEEEEEeccCCCcch-HHHHHHHHHHcCCceeEEeeeEEeeCCC-ccc-ccc-CCChhhhhHHHHhc--cCCCEEEECC
Q 009814 297 PVRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPACD-LED-ATE-KENPDAYKAAWKLL--KGADGILVPG 370 (524)
Q Consensus 297 ~v~IaiVGkY~~~~da-y~SI~~aL~~ag~~~~v~v~i~~i~s~~-le~-~~~-~~~p~~y~~~~~~l--~~~DGIllpG 370 (524)
..+|+++- |..+.+. .....+.|+.+|+++.+. -..... +.. ... .-.|.. ..+.+ ..+|.|||||
T Consensus 10 mkkV~ILl-~dgf~~~El~~p~dvL~~Ag~~v~vv----S~~~g~~V~ss~G~~~i~~d~---~l~~v~~~~~DaLiVPG 81 (365)
T 3fse_A 10 KKKVAILI-EQAVEDTEFIIPCNGLKQAGFEVVVL----GSRMNEKYKGKRGRLSTQADG---TTTEAIASEFDAVVIPG 81 (365)
T ss_dssp -CEEEEEC-CTTBCHHHHHHHHHHHHHTTCEEEEE----ESSSSCCEECTTSCCEECCSE---ETTTCCGGGCSEEEECC
T ss_pred ceEEEEEE-CCCCcHHHHHHHHHHHHHCCCEEEEE----ECCCCceeecCCCceEEeCCC---CHhhCCCcCCCEEEEEC
Confidence 45788873 6555432 445678999999776553 111110 100 000 000000 01122 2589999999
Q ss_pred CCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 371 GFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 371 GfG~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
|+|.. ..+..+..++.+.++++|+.+||-|-.+|+
T Consensus 82 G~g~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA 119 (365)
T 3fse_A 82 GMAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLI 119 (365)
T ss_dssp BTHHHHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHH
Confidence 98642 335678899999999999999999999887
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.42 Score=50.88 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=36.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
+.|+++|- +|.||=.+++.|+..|+.+|++|.++..|||-
T Consensus 101 ~vIlivG~--~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 101 TILLMVGI--QGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp EEEEEECC--TTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred eEEEEECc--CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 46777875 99999999999999999999999999999973
|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.11 Score=49.01 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=37.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHC-CCeeEEeeeccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPY 42 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~-g~~v~~~k~dpy 42 (524)
||.|.|+++ -.|.||=.+|+.|+..|..+ |+||-++.+||.
T Consensus 4 ~~vI~v~s~-kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSA-KGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEES-STTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CeEEEEECC-CCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 578888876 58999999999999999999 999999999997
|
| >3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A | Back alignment and structure |
|---|
Probab=93.77 E-value=0.048 Score=52.68 Aligned_cols=46 Identities=17% Similarity=0.106 Sum_probs=39.1
Q ss_pred ccCCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
+..+|.|+||||+|.. ..+..+..++.+.++++++.+||-|-.+|+
T Consensus 63 ~~~~D~livpGG~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La 111 (231)
T 3noq_A 63 CPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLG 111 (231)
T ss_dssp CCCCSEEEECCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHH
T ss_pred CCcCCEEEECCCCChhhhccCHHHHHHHHHHHhcCCEEEEECHHHHHHH
Confidence 4578999999998763 335678899999999999999999998877
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.7 Score=48.98 Aligned_cols=39 Identities=28% Similarity=0.456 Sum_probs=35.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+.|+++|. +|.||=.+++.|+.+|+.+|.+|.++-.|+|
T Consensus 98 ~vI~lvG~--~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 98 FIIMLVGV--QGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp EEEEECCC--TTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 56788875 8999999999999999999999999999976
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.18 Score=47.25 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=35.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|| |.|+| -.|.||=.+|+.++..|..+|+||-++.+||-
T Consensus 1 mk-I~vs~--kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 1 MK-LAVAG--KGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp CE-EEEEC--SSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred CE-EEEec--CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 67 55564 89999999999999999999999999999994
|
| >3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.33 Score=54.24 Aligned_cols=95 Identities=11% Similarity=0.042 Sum_probs=61.4
Q ss_pred eEEEEEeccCCCcc-hHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCC--
Q 009814 298 VRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-- 374 (524)
Q Consensus 298 v~IaiVGkY~~~~d-ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~-- 374 (524)
.+|||+-.-+...+ ....+.++|+.+|+.+.+. ..+. .. .... .|.+ .....+|+|+||||...
T Consensus 538 rKVaILvadG~fE~~El~~p~~aL~~aGa~V~vV------sp~~-g~-GvD~---t~~~--~~s~~fDAVvlPGG~~~~~ 604 (688)
T 3ej6_A 538 LRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVI------AEYL-AS-GVDQ---TYSA--ADATAFDAVVVAEGAERVF 604 (688)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEE------ESSC-CT-TCCE---ETTT--CCGGGCSEEEECTTCCTTT
T ss_pred CEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEE------eCCC-CC-Cccc---Cccc--CChhcCcEEEECCCccccc
Confidence 47877732221222 4577889999999988775 2111 00 0000 0000 01246899999999632
Q ss_pred ---------CchhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 375 ---------RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 375 ---------rg~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
+.....+..++.+-++++|+..||-|-|+|.
T Consensus 605 ~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~ 644 (688)
T 3ej6_A 605 SGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQ 644 (688)
T ss_dssp STTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHH
T ss_pred ccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHHHHH
Confidence 2335678899999999999999999999998
|
| >1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A | Back alignment and structure |
|---|
Probab=93.24 E-value=0.033 Score=53.99 Aligned_cols=45 Identities=11% Similarity=0.046 Sum_probs=37.9
Q ss_pred cCCCEEEECCCCCCC----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~r----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.++|+||||||.|.. ..+...+.++.+.++++|+.+||-|-++|+
T Consensus 97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La 145 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFD 145 (243)
T ss_dssp GGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGT
T ss_pred hhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHH
Confidence 368999999998842 345678899999999999999999998766
|
| >3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ... | Back alignment and structure |
|---|
Probab=93.23 E-value=0.1 Score=58.89 Aligned_cols=99 Identities=17% Similarity=0.082 Sum_probs=61.2
Q ss_pred eEEEEEeccCCCcc-hHHHHHHHHHHcCCceeEEe-eeEEeeCCCccccccCCChhhhhHHHHh--ccCCCEEEECCCCC
Q 009814 298 VRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKL-VIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPGGFG 373 (524)
Q Consensus 298 v~IaiVGkY~~~~d-ay~SI~~aL~~ag~~~~v~v-~i~~i~s~~le~~~~~~~p~~y~~~~~~--l~~~DGIllpGGfG 373 (524)
.+|+|+- ...+.+ ...++.++|+.+|+.+.+.- ..-.|.+.. ...+..+- .+ +. ...+|+|+|||| |
T Consensus 601 rKVaILl-aDGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~--G~~V~aD~-t~----~~v~s~~fDALVVPGG-g 671 (753)
T 3ttv_A 601 RVVAILL-NDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADD--GTVLPIAA-TF----AGAPSLTVDAVIVPCG-N 671 (753)
T ss_dssp CEEEEEC-CTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTT--SCEEECCE-ET----TTSCGGGCSEEEECCS-C
T ss_pred CEEEEEe-cCCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCC--CCEEeccc-ch----hhCCCcCCCEEEECCC-C
Confidence 4777763 333333 46778999999998766530 000111110 00000000 00 11 134899999999 6
Q ss_pred CC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 374 NR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 374 ~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.. .....+..++.+.++++|+-+||-|-++|+
T Consensus 672 ~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa 706 (753)
T 3ttv_A 672 IADIADNGDANYYLMEAYKHLKPIALAGDARKFKA 706 (753)
T ss_dssp GGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGG
T ss_pred hHHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHH
Confidence 53 345688899999999999999999999887
|
| >3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0 | Back alignment and structure |
|---|
Probab=92.89 E-value=0.05 Score=53.42 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=38.4
Q ss_pred cCCCEEEECCCCCC----CchhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~----rg~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.++|+|+||||.|. +..+...+.++.+.++++|+.+||-|-++|+
T Consensus 104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La 152 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLP 152 (247)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGG
T ss_pred hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 46899999999985 2345678899999999999999999998876
|
| >3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.07 Score=55.23 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=38.9
Q ss_pred cCCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 361 KGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 361 ~~~DGIllpGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
..+|.|+||||+|.. ..+..+..++.+.++++|+.+||-|-++|+-
T Consensus 281 ~~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~ 329 (396)
T 3uk7_A 281 SSYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAA 329 (396)
T ss_dssp GGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHH
T ss_pred ccCCEEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHH
Confidence 478999999998743 3356788999999999999999999998873
|
| >3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.055 Score=52.95 Aligned_cols=45 Identities=13% Similarity=0.049 Sum_probs=38.5
Q ss_pred cCCCEEEECCCCCC----CchhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~----rg~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.++|+|+||||.|. +..+...+.++.+.++++|+.+||-|-.+|+
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La 145 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFD 145 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGT
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHH
Confidence 46899999999875 2346778899999999999999999998876
|
| >3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.056 Score=51.39 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=37.7
Q ss_pred cCCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..+|.|+||||+|.. ..+..+..++.+.++++|+.+||-|-.+|+
T Consensus 64 ~~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La 111 (211)
T 3mgk_A 64 NIEKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLS 111 (211)
T ss_dssp SSEEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHH
T ss_pred CCCCEEEECCCcchhhhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHH
Confidence 347999999998753 235678889999999999999999998877
|
| >3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.83 E-value=0.1 Score=54.00 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=39.2
Q ss_pred cCCCEEEECCCCCCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH
Q 009814 361 KGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 361 ~~~DGIllpGGfG~r---g~eg~i~air~are~~iP~LGICLGmQll~ie 407 (524)
..+|.|+||||.|.. ..+..+..++.+.++++|+.+||-|-++|+-+
T Consensus 88 ~~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 88 SKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp GGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred ccCCEEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 568999999998742 23567889999999999999999999988743
|
| >3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0 | Back alignment and structure |
|---|
Probab=91.80 E-value=0.054 Score=51.17 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=60.1
Q ss_pred eEEEEEeccCCCcc-hHHHHHHHHHHcCCceeEEeee--EEeeCCC-ccccccCCChhhhhHHHHhc--cCCCEEEECCC
Q 009814 298 VRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVI--DWIPACD-LEDATEKENPDAYKAAWKLL--KGADGILVPGG 371 (524)
Q Consensus 298 v~IaiVGkY~~~~d-ay~SI~~aL~~ag~~~~v~v~i--~~i~s~~-le~~~~~~~p~~y~~~~~~l--~~~DGIllpGG 371 (524)
.+|+++- +..+.+ ......+.|+.+|+++.+.-.- ..+.+.. +. +..+. ..+.+ ..+|.|+||||
T Consensus 10 ~~v~ill-~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~---v~~d~-----~l~~~~~~~~D~livpGG 80 (208)
T 3ot1_A 10 KRILVPV-AHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVW---LTAEQ-----TLEACSAEAFDALALPGG 80 (208)
T ss_dssp CEEEEEE-CTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCE---EECSE-----EGGGCCGGGCSEEEECCC
T ss_pred CeEEEEE-CCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcE---EeCCC-----CHHHCCCcCCCEEEECCC
Confidence 4677773 544443 3455678999999776553100 0111110 00 00000 01222 46899999999
Q ss_pred CCCC----chhHHHHHHHHHHHcCCCEEEEhHhH-HHHH
Q 009814 372 FGNR----GVQGKILAAKYAREHRIPYLGICLGM-QVAV 405 (524)
Q Consensus 372 fG~r----g~eg~i~air~are~~iP~LGICLGm-Qll~ 405 (524)
.+.. ..+..++.++.+.++++|+.+||-|- .+|+
T Consensus 81 ~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La 119 (208)
T 3ot1_A 81 VGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFA 119 (208)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTT
T ss_pred chHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHH
Confidence 7532 33567889999999999999999998 7776
|
| >1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A | Back alignment and structure |
|---|
Probab=91.32 E-value=0.073 Score=53.35 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=38.5
Q ss_pred ccCCCEEEECCCCCCC-c---hhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGNR-G---VQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~r-g---~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..++|+||||||.|.. . .+...+.++.+.++++|+.+||-|-.+|+
T Consensus 143 ~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La 192 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFL 192 (291)
T ss_dssp TCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGG
T ss_pred cccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHH
Confidence 3578999999998764 2 35678899999999999999999998655
|
| >3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.11 Score=50.95 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=37.1
Q ss_pred CCCEEEECCCC-CCC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 362 GADGILVPGGF-GNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 362 ~~DGIllpGGf-G~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.+|.||||||. |.. ..+..+..++.+.++++++.+||-|-.+|+
T Consensus 84 ~yD~liVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa 131 (253)
T 3ewn_A 84 DLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILG 131 (253)
T ss_dssp SCSEEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHH
T ss_pred CCCEEEECCCccchhhhccCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 45999999998 643 345678899999999999999999998877
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=90.52 E-value=2.1 Score=45.18 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=35.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
+.|.++| .+|-||=.+++.|+.+|+.+|.+|.++..|+|-
T Consensus 99 ~vi~i~G--~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 99 NLWFLVG--LQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp EEEEEEC--CTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 4677775 399999999999999999999999999999873
|
| >2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A* | Back alignment and structure |
|---|
Probab=90.51 E-value=0.53 Score=52.66 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=60.9
Q ss_pred eEEEEEec--cCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCC-C-
Q 009814 298 VRIAMVGK--YTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF-G- 373 (524)
Q Consensus 298 v~IaiVGk--Y~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGf-G- 373 (524)
.+|+++-. -+--......+..+|+.+|+.+.+. ....-+..+. .|.+ .....+|+|+||||. |
T Consensus 530 ~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vV------s~~~g~~vD~-----t~~~--~~s~~fDAVvlPGG~~g~ 596 (688)
T 2iuf_A 530 LKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVV------AERXANNVDE-----TYSA--SDAVQFDAVVVADGAEGL 596 (688)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEE------ESSCCTTCCE-----ESTT--CCGGGCSEEEECTTCGGG
T ss_pred CEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEE------eccCCccccc-----chhc--CCccccCeEEecCCCccc
Confidence 47888742 1111124577889999999988775 1111000000 0100 013468999999994 4
Q ss_pred ---------------C---CchhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 374 ---------------N---RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 374 ---------------~---rg~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
. +.....++.++.+-+.++|+-.||-|-++|.
T Consensus 597 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~ 646 (688)
T 2iuf_A 597 FGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALE 646 (688)
T ss_dssp CCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHH
T ss_pred ccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHH
Confidence 1 1335678899999999999999999999876
|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
Probab=90.44 E-value=0.36 Score=45.79 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=37.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (524)
+|.|.|+++ -.|.||=.+|+.++..|..+|++|-++.+||
T Consensus 2 ~~vi~v~s~-kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 2 ARIIVVTSG-KGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp CEEEEEECS-STTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECC-CCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 478888886 5899999999999999999999999999999
|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
Probab=90.36 E-value=0.38 Score=45.06 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=37.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
+|.|.|+++ -.|.||=.+|+.++..|..+|+||-.+.+||.
T Consensus 2 ~~~i~v~s~-kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 2 GRIISIVSG-KGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp CEEEEEECS-STTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred ceEEEEecC-CCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 488889885 57999999999999999999999999999994
|
| >4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A | Back alignment and structure |
|---|
Probab=90.05 E-value=0.35 Score=45.16 Aligned_cols=44 Identities=20% Similarity=0.053 Sum_probs=31.4
Q ss_pred ccCCCEEEECCCCCC-C---chhHHHHHHHHHHH-cCCCEEEEhHhHHH
Q 009814 360 LKGADGILVPGGFGN-R---GVQGKILAAKYARE-HRIPYLGICLGMQV 403 (524)
Q Consensus 360 l~~~DGIllpGGfG~-r---g~eg~i~air~are-~~iP~LGICLGmQl 403 (524)
..++|.|+||||.+. . ..+..++.++.+.+ .++|+-.||-|..+
T Consensus 71 ~~~yD~lvvPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~l 119 (194)
T 4gdh_A 71 AKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLT 119 (194)
T ss_dssp HHHCSEEEECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGHH
T ss_pred cccCCEEEECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeecccccc
Confidence 356899999999643 2 23456677776644 47899999999743
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=89.73 E-value=0.42 Score=44.16 Aligned_cols=44 Identities=25% Similarity=0.250 Sum_probs=36.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-ccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-LNTD 46 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy-ln~d 46 (524)
++.|.++| -||-||-.....|-..|+.+|++|..+|.||- .++|
T Consensus 6 ~~~i~i~G--~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~~id 50 (174)
T 1np6_A 6 IPLLAFAA--WSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVD 50 (174)
T ss_dssp CCEEEEEC--CTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-----
T ss_pred ceEEEEEe--CCCCCHHHHHHHHHHhccccCCceeEEeeCCCccccC
Confidence 46788888 79999999999999999999999999999983 3555
|
| >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 | Back alignment and structure |
|---|
Probab=89.22 E-value=0.62 Score=52.46 Aligned_cols=101 Identities=13% Similarity=0.036 Sum_probs=61.7
Q ss_pred eEEEEEeccCCCcc-hHHHHHHHHHHcCCceeEEeeeEEeeCCCccc-cc--cCCChhhhhHHHHh--ccCCCEEEECCC
Q 009814 298 VRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPACDLED-AT--EKENPDAYKAAWKL--LKGADGILVPGG 371 (524)
Q Consensus 298 v~IaiVGkY~~~~d-ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~-~~--~~~~p~~y~~~~~~--l~~~DGIllpGG 371 (524)
.+|+|+- +..+.. ......++|+.+|+.+.+. ......+.. .. +..+. . .+. ...+|+||||||
T Consensus 535 rkVaILl-~dGfe~~El~~p~dvL~~AG~~V~iv----S~~gg~V~ss~G~~v~~d~-~----l~~v~~~~yDaViVPGG 604 (715)
T 1sy7_A 535 RRVAIII-ADGYDNVAYDAAYAAISANQAIPLVI----GPRRSKVTAANGSTVQPHH-H----LEGFRSTMVDAIFIPGG 604 (715)
T ss_dssp CEEEEEC-CTTBCHHHHHHHHHHHHHTTCEEEEE----ESCSSCEEBTTSCEECCSE-E----TTTCCGGGSSEEEECCC
T ss_pred CEEEEEE-cCCCCHHHHHHHHHHHHhcCCEEEEE----ECCCCceecCCCceEeccc-c----cccCCcccCCEEEEcCC
Confidence 4788883 544432 2455678999999776553 111111110 00 00000 0 011 235799999999
Q ss_pred CCCC----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHh
Q 009814 372 FGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (524)
Q Consensus 372 fG~r----g~eg~i~air~are~~iP~LGICLGmQll~ie~ 408 (524)
.+.. .....+..++.+.++++|+.+||-|-.+|+-++
T Consensus 605 ~~~~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~Al 645 (715)
T 1sy7_A 605 AKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAI 645 (715)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHH
T ss_pred cccHhhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHcc
Confidence 5322 234578899999999999999999999988553
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=89.04 E-value=0.33 Score=52.76 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=34.0
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 3 ~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
-|++++| -.|.||-.+|++++..|..+|.+|-++-.||.-|.
T Consensus 328 ~~~~~~~-~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~~l 369 (589)
T 1ihu_A 328 GLIMLMG-KGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHL 369 (589)
T ss_dssp EEEEEEC-STTSSHHHHHHHHHHHHHHTTCCEEEEESCCC---
T ss_pred eEEEEec-CCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcccH
Confidence 3455544 57899999999999999999999999999997554
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=88.21 E-value=0.56 Score=45.04 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=37.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
+|.|.|+++ -.|.||=.+|+.++..|. +|+||-++.+||.-|
T Consensus 27 ~~vI~v~s~-kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~ 68 (267)
T 3k9g_A 27 PKIITIASI-KGGVGKSTSAIILATLLS-KNNKVLLIDMDTQAS 68 (267)
T ss_dssp CEEEEECCS-SSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCH
T ss_pred CeEEEEEeC-CCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCC
Confidence 467778766 589999999999999999 999999999999754
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=87.71 E-value=0.63 Score=44.82 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=37.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
+|-|.|+++ -.|.||=.+|+.|+..|..+|++|-++.+||.-
T Consensus 18 ~~vI~v~s~-kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSG-KGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECS-SSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CeEEEEEcC-CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 467888876 479999999999999999999999999999986
|
| >3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=87.43 E-value=0.78 Score=46.28 Aligned_cols=44 Identities=32% Similarity=0.440 Sum_probs=39.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (524)
+|.|-|+| =-|+||=.||+.|+..|..+|+||-++=+||+.|.-
T Consensus 48 aKVIAIaG--KGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~ 91 (314)
T 3fwy_A 48 AKVFAVYG--KGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDST 91 (314)
T ss_dssp CEEEEEEC--STTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTT
T ss_pred ceEEEEEC--CCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCccc
Confidence 58899995 668999999999999999999999999999987753
|
| >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A | Back alignment and structure |
|---|
Probab=86.85 E-value=0.82 Score=44.55 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=38.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
||-|.|+ | =-|.||=.+|+.|+..|..+|+||-++-+||.-|
T Consensus 2 MkvIavs-~-KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~ 43 (289)
T 2afh_E 2 MRQCAIY-G-KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKAD 43 (289)
T ss_dssp CEEEEEE-E-CTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSC
T ss_pred ceEEEEe-C-CCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 7888886 5 8899999999999999999999999999999754
|
| >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=86.51 E-value=0.8 Score=43.80 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=38.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
||-|.|+ | =-|.||=.+|+.|+..|..+|+||-++-+||.-|
T Consensus 1 M~vI~vs-~-KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~ 42 (269)
T 1cp2_A 1 MRQVAIY-G-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKAD 42 (269)
T ss_dssp CEEEEEE-E-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred CcEEEEe-c-CCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCC
Confidence 7888886 5 8899999999999999999999999999999654
|
| >3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=85.98 E-value=0.62 Score=46.77 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=37.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
||-|+||+| -.|.||=.+|++++..|..+|.||-++-.||-
T Consensus 13 m~~i~v~sg-KGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 13 KTTFVFIGG-KGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp BCEEEEEEE-STTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CeEEEEEeC-CCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 467777877 78999999999999999999999999999983
|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
Probab=84.68 E-value=0.92 Score=43.46 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=37.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
||-|.|+++ -.|.||=.+|+.|+..|..+|+||-++.+||.-|
T Consensus 6 ~~vI~v~s~-kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~ 48 (257)
T 1wcv_1 6 VRRIALANQ-KGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGN 48 (257)
T ss_dssp CCEEEECCS-SCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred CEEEEEEeC-CCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcC
Confidence 467888764 5789999999999999999999999999999644
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A | Back alignment and structure |
|---|
Probab=84.29 E-value=1.2 Score=41.30 Aligned_cols=40 Identities=30% Similarity=0.355 Sum_probs=34.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
+|-|+||++ -.|.||=.+|+.|+..|..+|+||-. +||-.
T Consensus 1 ~k~I~v~s~-kgGvGKTt~a~nLa~~la~~G~rVll--~dp~~ 40 (224)
T 1byi_A 1 SKRYFVTGT-DTEVGKTVASCALLQAAKAAGYRTAG--YKPVA 40 (224)
T ss_dssp CEEEEEEES-STTSCHHHHHHHHHHHHHHTTCCEEE--ECSEE
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEE--Eccee
Confidence 578899875 57899999999999999999999998 56744
|
| >3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* | Back alignment and structure |
|---|
Probab=82.91 E-value=1.2 Score=45.27 Aligned_cols=41 Identities=32% Similarity=0.536 Sum_probs=36.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
||-|+||+| -.|.||=.+|++++..|..+|.||-++-.||-
T Consensus 25 ~~~i~v~sg-KGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 25 GTKYIMFGG-KGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp SCEEEEEEC-SSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred CCEEEEEeC-CCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 456777777 78999999999999999999999999999984
|
| >2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=82.31 E-value=12 Score=38.61 Aligned_cols=151 Identities=17% Similarity=0.151 Sum_probs=94.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
+|-|||||= =+++||=.++..|-+.|+.+|+++..+|- -|-|..- ...|-..|-
T Consensus 152 ~k~i~v~GT-D~~VGK~~ts~~L~~~l~~~G~~a~~~~t-------------gqtg~~~-~~~gi~~Da----------- 205 (349)
T 2obn_A 152 CRRVLTVGT-DMAIGKMSTSLELHWAAKLRGWRSKFLAT-------------GQTGVML-EGDGVALDA----------- 205 (349)
T ss_dssp SEEEEEEES-SSSSSHHHHHHHHHHHHHHTTCCEEEECC-------------SHHHHHH-HSCSCCGGG-----------
T ss_pred ceEEEEcCC-CccccceeHHHHHHHHHHhcCCcEEEEec-------------cchhhhh-hcCCcchhH-----------
Confidence 367899986 77799999999999999999999998542 2433211 111212221
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
-.....+| ++.+.+.+++ +++|+++||==|-+--=-+...+
T Consensus 206 ---v~~df~aG----------------------------~ve~~~~~~~--------~~~d~vlVEGqGgl~~P~~~~t~ 246 (349)
T 2obn_A 206 ---VRVDFAAG----------------------------AVEQMVMRYG--------KNYDILHIEGQGSLLHPGSTATL 246 (349)
T ss_dssp ---SBHHHHHH----------------------------HHHHHHHHHT--------TTCSEEEECCCCCTTSTTCCTHH
T ss_pred ---HHHHHHhh----------------------------hHHHHHHHhc--------cCCCEEEEeCCCcccCcChHhHH
Confidence 00111122 3334444442 36899999965544321122233
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhc--------CCCcccEEEEecCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRG--------QGLTPNILACRSTV 220 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs--------~Gi~pd~lv~R~~~ 220 (524)
.|-....+.-++.+|-.=...+..--+++--|-+|.+...+. .|+++-++++-...
T Consensus 247 ----~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~ 310 (349)
T 2obn_A 247 ----PLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAH 310 (349)
T ss_dssp ----HHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTT
T ss_pred ----HHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 333444556699999877777765556666677877776665 68999999988755
|
| >3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=82.20 E-value=1.3 Score=45.08 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=41.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDA 47 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~ 47 (524)
||.|.|+++ --|.||=.+|+.+|..|..+|.||-++-+||.-|.-.
T Consensus 1 MkvIav~s~-KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~ 46 (361)
T 3pg5_A 1 MRTISFFNN-KGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQ 46 (361)
T ss_dssp CEEEEBCCS-SCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHH
T ss_pred CeEEEEEcC-CCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhh
Confidence 788999877 7899999999999999999999999999999866543
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=81.49 E-value=1.1 Score=40.06 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=32.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
|++|+++|. +|-||...+..|...|...|+++..+-
T Consensus 1 M~~I~i~G~--~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 1 MKIGIVTGI--PGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp CEEEEEEEC--TTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 789999995 899999999999999999999887763
|
| >1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* | Back alignment and structure |
|---|
Probab=81.43 E-value=1.1 Score=44.67 Aligned_cols=72 Identities=26% Similarity=0.228 Sum_probs=49.5
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg 376 (524)
.++|+++++.... ...+.+.|+..|+++.+. .+.- +.+.++|.|++-||=|
T Consensus 29 ~mki~iv~~~~~~---~~~l~~~L~~~g~~v~~~-------~~~~----------------~~~~~~DlvIvlGGDG--- 79 (278)
T 1z0s_A 29 GMRAAVVYKTDGH---VKRIEEALKRLEVEVELF-------NQPS----------------EELENFDFIVSVGGDG--- 79 (278)
T ss_dssp -CEEEEEESSSTT---HHHHHHHHHHTTCEEEEE-------SSCC----------------GGGGGSSEEEEEECHH---
T ss_pred ceEEEEEeCCcHH---HHHHHHHHHHCCCEEEEc-------cccc----------------cccCCCCEEEEECCCH---
Confidence 3689999876532 567788899999876543 1110 2346789999999832
Q ss_pred hhHHHHHHHHHHHcCCCEEEEhHh
Q 009814 377 VQGKILAAKYAREHRIPYLGICLG 400 (524)
Q Consensus 377 ~eg~i~air~are~~iP~LGICLG 400 (524)
..+.+++++... +|++||=+|
T Consensus 80 --T~L~aa~~~~~~-~PilGIN~G 100 (278)
T 1z0s_A 80 --TILRILQKLKRC-PPIFGINTG 100 (278)
T ss_dssp --HHHHHHTTCSSC-CCEEEEECS
T ss_pred --HHHHHHHHhCCC-CcEEEECCC
Confidence 244667766555 999999887
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=81.41 E-value=9.4 Score=37.75 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=35.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
+.|.++| .+|-||=.+++.|+.+++..|.+|.++-.|++-
T Consensus 99 ~~i~i~g--~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 99 NLWFLVG--LQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp EEEEEEC--CTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 5678885 499999999999999999999999999999874
|
| >3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} | Back alignment and structure |
|---|
Probab=80.84 E-value=0.42 Score=46.38 Aligned_cols=45 Identities=22% Similarity=0.170 Sum_probs=32.0
Q ss_pred ccCCCEEEECCC-CCCC---chhHHHHHHHHHHHcCC-CEEEEhHhHHHHHH
Q 009814 360 LKGADGILVPGG-FGNR---GVQGKILAAKYAREHRI-PYLGICLGMQVAVI 406 (524)
Q Consensus 360 l~~~DGIllpGG-fG~r---g~eg~i~air~are~~i-P~LGICLGmQll~i 406 (524)
...+|.|+|||| +|.+ ..+..+..+ ..+++. |+.+||-|-.+|+-
T Consensus 78 ~~~~D~liVPGG~~g~~~l~~~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~ 127 (236)
T 3bhn_A 78 VKEQDVVLITSGYRGIPAALQDENFMSAL--KLDPSRQLIGSICAGSFVLHE 127 (236)
T ss_dssp GGGCSEEEECCCTTHHHHHHTCHHHHHHC--CCCTTTCEEEEETTHHHHHHH
T ss_pred ccCCCEEEEcCCccCHhhhccCHHHHHHH--HhCCCCCEEEEEcHHHHHHHH
Confidence 467899999999 6653 223455555 333455 99999999998873
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 524 | ||||
| d2vo1a1 | 273 | c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal | 1e-141 | |
| d1s1ma2 | 266 | c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal | 1e-132 | |
| d1vcoa2 | 272 | c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal | 1e-131 | |
| d1s1ma1 | 258 | c.23.16.1 (A:287-544) CTP synthase PyrG, C-termina | 2e-59 | |
| d1vcoa1 | 250 | c.23.16.1 (A:298-547) CTP synthase PyrG, C-termina | 2e-58 | |
| d1l9xa_ | 288 | c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho | 6e-09 | |
| d2abwa1 | 218 | c.23.16.1 (A:2-219) Pyridoxine biosynthesis protei | 3e-06 | |
| d1ihua1 | 296 | c.37.1.10 (A:1-296) Arsenite-translocating ATPase | 0.003 |
| >d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 405 bits (1041), Expect = e-141
Identities = 181/272 (66%), Positives = 221/272 (81%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
MKY+LVTGGV+SG+GKG+ ASS+G +LK+CGL VT IKIDPY+N DAGT SP+EHGEVFV
Sbjct: 1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
LDDGGEVDLDLGNYERF+DI+LT+DNN+TTGKIYQ VI+KERKGDYLGKTVQVVPHITD
Sbjct: 61 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDA 120
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
IQ+W+ R A+IPVD VCVIELGGT+GDIESMPFIEA QF ++V NFC IHV
Sbjct: 121 IQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHV 180
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
SLVP + GEQKTKPTQ+SVR LRG GL+P+++ CR + LD +VK K+S FCHV +
Sbjct: 181 SLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ 240
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNL 272
+I ++DV +I+ +PLLL +Q + + L+L
Sbjct: 241 VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDL 272
|
| >d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 383 bits (985), Expect = e-132
Identities = 137/272 (50%), Positives = 190/272 (69%), Gaps = 8/272 (2%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
Y+ VTGGVVS LGKG+ A+S+ +L+A GL VT +K+DPY+N D GTMSP +HGEVFV
Sbjct: 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFV 62
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
+DG E DLDLG+YERF+ K++R NN TTG+IY V+ KER+GDYLG TVQV+PHIT+
Sbjct: 63 TEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNA 122
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
I++ + DV ++E+GGT+GDIES+PF+EA+ Q + +G + +H+
Sbjct: 123 IKERVLEGGE--------GHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHL 174
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
+LVP + GE KTKPTQHSV+ L G+ P+IL CRS A+ N + K++ FC+VPE+
Sbjct: 175 TLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKA 234
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNL 272
+I+L DV +I+ IP LL+ Q + I K +L
Sbjct: 235 VISLKDVDSIYKIPGLLKSQGLDDYICKRFSL 266
|
| >d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 381 bits (981), Expect = e-131
Identities = 143/279 (51%), Positives = 195/279 (69%), Gaps = 8/279 (2%)
Query: 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFV 60
KYV +TGGVVS LGKG+ SS+G LL+A G RVT IKIDPY+N DAGTM P+EHGEVFV
Sbjct: 2 RKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFV 61
Query: 61 LDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDE 120
DG E DLD+G+YERF+D+ L+R NN+TTG++Y SVI KER+G+YL +TVQV+PHITDE
Sbjct: 62 TADGAETDLDIGHYERFLDMDLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDE 121
Query: 121 IQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180
I++ I +VA ++ V+E+GGT+GDIES+PF+EA+ QF + G GN +H+
Sbjct: 122 IKERIRKVAEEQKA------EIVVVEVGGTVGDIESLPFLEAIRQFRFDEGEGNTLYLHL 175
Query: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240
+LVP L E KTKPTQHSV LRG G+ P+IL RS + + V+ K++ F +V +
Sbjct: 176 TLVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGH 235
Query: 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEP 279
+ + V +++ +PLLL +Q A+ + L L+ P
Sbjct: 236 VFSSPTVEHLYEVPLLLEEQGLGRAVERALGLE--AVIP 272
|
| >d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 195 bits (496), Expect = 2e-59
Identities = 91/222 (40%), Positives = 123/222 (55%), Gaps = 20/222 (9%)
Query: 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW 357
V I MVGKY L DAY S+++AL H + R + I I + D+E
Sbjct: 4 VTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVE-----------TRGV 52
Query: 358 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417
++LKG D ILVPGGFG RGV+G I A++ARE+ IPYLGICLGMQVA+I++AR V N+ +
Sbjct: 53 EILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMEN 112
Query: 418 ANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ---------IKDCKSAKLYG 468
ANSTEF P+ K P V + E + +R + D +
Sbjct: 113 ANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLY 172
Query: 469 NRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEV 510
N I ERHRHRYEVN ++ ++E+AGL G+ Q +E+
Sbjct: 173 NAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEI 214
|
| >d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 192 bits (488), Expect = 2e-58
Identities = 90/218 (41%), Positives = 123/218 (56%), Gaps = 16/218 (7%)
Query: 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW 357
V+IA+ GKY + DAYLS+L+AL HA + R ++ + W+ A LE
Sbjct: 4 VKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEA----------ADLE 53
Query: 358 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417
+ + GILVPGGFG RG++GK+ AA+YARE +IPYLGICLG+Q+AVIEFAR+V L+
Sbjct: 54 EAFRDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKG 113
Query: 418 ANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERH 477
ANSTEFDP+T +P + MPE + G +LYG + ERH
Sbjct: 114 ANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLLHRLYGKEE-VLERH 172
Query: 478 RHRYEVNPDMIARLEN-----AGLSFTGKDETSQRMEV 510
RHRYEVNP + LE + + + + +E
Sbjct: 173 RHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEA 210
|
| >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: gamma-glutamyl hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (131), Expect = 6e-09
Identities = 24/177 (13%), Positives = 39/177 (22%), Gaps = 27/177 (15%)
Query: 349 NPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAA---------KYAREHRIPYLGICL 399
K L K +GIL PGG + A + P G CL
Sbjct: 46 LDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCL 105
Query: 400 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK 459
G + + + L D + F + M FQ
Sbjct: 106 GFEELSLLISGECLLT------ATDTVDVAMPLNFTGGQLHSRM------------FQNF 147
Query: 460 DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYK 516
+ H+ V + + + + + T
Sbjct: 148 PTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGY 204
|
| >d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Pyridoxine biosynthesis protein 2, Pdx2 species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 46.1 bits (108), Expect = 3e-06
Identities = 17/146 (11%), Positives = 38/146 (26%), Gaps = 3/146 (2%)
Query: 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 419
L DG+++PG + V+ + + + L + +L+ N
Sbjct: 40 LGLCDGLVIPG-GESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVEN 98
Query: 420 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 479
+ + + G S+ + T R +
Sbjct: 99 IKLYSNFGNKFSFGGLDITICRNFYG--SQNDSFICSLNIISDSSAFKKDLTAACIRAPY 156
Query: 480 RYEVNPDMIARLENAGLSFTGKDETS 505
E+ D + L G + +
Sbjct: 157 IREILSDEVKVLATFSHESYGPNIIA 182
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Score = 37.7 bits (86), Expect = 0.003
Identities = 26/167 (15%), Positives = 44/167 (26%), Gaps = 15/167 (8%)
Query: 2 KYVLVT--GGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVF 59
Y+ T GGV GK + + + L G RV + DP N +
Sbjct: 9 PYLFFTGKGGV----GKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQ- 63
Query: 60 VLDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITD 119
+ G +D + + + Q+ T
Sbjct: 64 ------AIASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPD--DVVSSINEQLSGACTT 115
Query: 120 EIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQF 166
EI + E ++ D + + T I + A F
Sbjct: 116 EIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSF 162
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 524 | |||
| d2vo1a1 | 273 | CTP synthase PyrG, N-terminal domain {Human (Homo | 100.0 | |
| d1s1ma2 | 266 | CTP synthase PyrG, N-terminal domain {Escherichia | 100.0 | |
| d1vcoa2 | 272 | CTP synthase PyrG, N-terminal domain {Thermus ther | 100.0 | |
| d1vcoa1 | 250 | CTP synthase PyrG, C-terminal domain {Thermus ther | 100.0 | |
| d1s1ma1 | 258 | CTP synthase PyrG, C-terminal domain {Escherichia | 100.0 | |
| d1a9xb2 | 228 | Carbamoyl phosphate synthetase, small subunit C-te | 99.88 | |
| d1wl8a1 | 188 | GMP synthase subunit A, GuaAA {Archaeon Pyrococcus | 99.81 | |
| d2a9va1 | 196 | GMP synthase subunit A, GuaAA {Archaeon Thermoplas | 99.78 | |
| d1qdlb_ | 195 | Anthranilate synthase GAT subunit, TrpG {Archaeon | 99.76 | |
| d1i7qb_ | 192 | Anthranilate synthase GAT subunit, TrpG {Serratia | 99.74 | |
| d1l9xa_ | 288 | gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta | 99.72 | |
| d1gpma2 | 205 | GMP synthetase {Escherichia coli [TaxId: 562]} | 99.69 | |
| d1k9vf_ | 200 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.6 | |
| d1jvna2 | 232 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.57 | |
| d2nv0a1 | 195 | Hypothetical protein YaaE {Bacillus subtilis [TaxI | 99.56 | |
| d1o1ya_ | 230 | Hypothetical protein TM1158 {Thermotoga maritima [ | 99.52 | |
| d2abwa1 | 218 | Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p | 99.52 | |
| d1q7ra_ | 202 | Hypothetical protein YaaE {Bacillus stearothermoph | 99.49 | |
| d1ka9h_ | 195 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.39 | |
| d1a9xb1 | 151 | Carbamoyl phosphate synthetase, small subunit N-te | 99.02 | |
| d2ghra1 | 281 | Homoserine O-succinyltransferase HTS (MetA) {Bacil | 98.51 | |
| d1t3ta2 | 262 | FGAM synthase PurL, amidotransferase domain {Salmo | 98.28 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 96.82 | |
| d1vhqa_ | 217 | Putative sigma cross-reacting protein 27A (SCRP-27 | 96.59 | |
| d1p80a1 | 156 | Catalase, C-terminal domain {Escherichia coli, HPI | 96.56 | |
| d1g2ia_ | 166 | Intracellular protease {Archaeon Pyrococcus horiko | 96.48 | |
| d1p5fa_ | 186 | DJ-1 {Human (Homo sapiens) [TaxId: 9606]} | 96.23 | |
| d1sy7a1 | 184 | Catalase, C-terminal domain {Neurospora crassa [Ta | 95.9 | |
| d1oi4a1 | 170 | Hypothetical protein YhbO {Escherichia coli [TaxId | 95.16 | |
| d2fexa1 | 188 | Hypothetical protein Atu0886 {Agrobacterium tumefa | 95.12 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 94.22 | |
| d1u9ca_ | 221 | GK2698 ortholog {Bacillus stearothermophilus [TaxI | 93.82 | |
| d2ab0a1 | 195 | Protein ThiJ (YajL) {Escherichia coli [TaxId: 562] | 93.26 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.32 | |
| d1qvwa_ | 236 | Hypothetical protein Ydr533Cp {Baker's yeast (Sacc | 91.34 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 90.78 | |
| d1n57a_ | 279 | HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} | 89.73 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 89.73 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 84.83 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 84.14 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 83.24 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 82.7 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 81.15 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 80.6 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 80.04 |
| >d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-142 Score=1053.28 Aligned_cols=273 Identities=66% Similarity=1.114 Sum_probs=231.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+|||||||+|||||+|||+|||+|+++|||||||+||||||||||||||||+||+||||||||||||||+
T Consensus 1 mKyifVtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtmsP~eHGEvfVt~DG~EtDlDlG~YERFl~~ 80 (273)
T d2vo1a1 1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGEVDLDLGNYERFLDI 80 (273)
T ss_dssp CEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC----------------------------------
T ss_pred CeEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccceecCCCCCCHHHHhhhheecccccccccCcchHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+|+|+||+||||||++||+|||+|+|||||||||||||||||+||+++|.+|+|+++.+|||||||||||||||||+||+
T Consensus 81 ~l~~~~n~TtG~iy~~Vi~kER~G~yLGkTVQvIPHiTdeIk~~I~~~a~~~~~~~~~~~Di~IvEIGGTVGDIEs~pFl 160 (273)
T d2vo1a1 81 RLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFI 160 (273)
T ss_dssp -----CEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHSCCSSSCCCCSEEEEEECSCTTCGGGHHHH
T ss_pred CccccccccHHHHHHHHHHHHhccccccccCCcCCCHhHHHHHHHHHhhcccccccCCCCcEEEEEcCcccccchhcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||+++|++|+||||||||||++++||+||||||||||+|||+|||||+|+|||+.+++++.|+||||||+|++++
T Consensus 161 EAiRQl~~e~g~~n~~~iHvtlvP~~~~~gE~KTKPTQhSVkeLrs~GIqPDilvcRse~~l~~~~k~KIslFcnV~~~~ 240 (273)
T d2vo1a1 161 EAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ 240 (273)
T ss_dssp HHHHHHHHHSCGGGEEEEEEEECCCCCC-CCCCCHHHHHHHHHHHHHTCCCSEEEEECSSCCCHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHHhCCcceEEEeeccccccccchhhcccchhHHHHHHHHcCCCCCeeeeccCCCCCHHHHHHHHHhcCCChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCC
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQ 273 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~ 273 (524)
||+++|++|||+||+.|++||+++.++++|+|+
T Consensus 241 VI~~~Dv~sIYeVPl~l~~qgl~~~i~~~L~LP 273 (273)
T d2vo1a1 241 VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLP 273 (273)
T ss_dssp EEEECCCSSGGGHHHHHHHTTHHHHHHHHHTCC
T ss_pred EEEcCCcccHHHHHHHHHHCCcHHHHHHHcCCC
Confidence 999999999999999999999999999999985
|
| >d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-140 Score=1036.20 Aligned_cols=264 Identities=52% Similarity=0.904 Sum_probs=261.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 3 tkyifvtGGV~S~lGKGi~~aSig~llk~~g~~V~~~K~DPYlNvD~GtmsP~eHGEvfVt~DG~EtDlDlG~YERFl~~ 82 (266)
T d1s1ma2 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRT 82 (266)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSCGGGSCTTTSCCCEECTTSCEECTHHHHHHHHCSS
T ss_pred ceEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccceecCCCCCCchhhceeEEeccccccccCccceeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+|+++||+||||||++||+|||+|+|||||||||||||||||+||.++++ +|||||||||||||||||+||+
T Consensus 83 ~l~~~~niTtGkiy~~Vi~kER~G~yLG~TVQvIPHiTdeIk~~I~~~~~--------~~Di~ivEiGGTVGDIEs~pFl 154 (266)
T d1s1ma2 83 KMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGE--------GHDVVLVEIGGTVGDIESLPFL 154 (266)
T ss_dssp CCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHT--------TCSEEEEEECSCTTSSTTHHHH
T ss_pred CCcCccccchhHHHHHHHHHhhccccccCcccccCchHHHHHHHHHhcCC--------CCCEEEEeccceechhhcchHH
Confidence 99999999999999999999999999999999999999999999999873 6899999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||+++|++|+||||||||||++++||+||||||||||+|||.|||||+|+|||+.+++++.|+||||||+|++++
T Consensus 155 EAiRQl~~e~g~~n~~~iHvtlvP~l~~~gE~KTKPTQhSVkeLrs~GIqPDilvcRse~~l~~~~k~KIslFcnV~~~~ 234 (266)
T d1s1ma2 155 EAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKA 234 (266)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHTTTCCCSEEEEEESSCCCHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHhcCCCCEEEEeeccceeeccccccccchHHHHHHHHHhcCCCCCeEeeccccCCCHHHHHHHHhhcCCChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCC
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNL 272 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l 272 (524)
||+++|+++||+||+.|++||+++.++++|+|
T Consensus 235 VI~~~Dv~sIYeVPl~l~~qgl~~~I~~~L~L 266 (266)
T d1s1ma2 235 VISLKDVDSIYKIPGLLKSQGLDDYICKRFSL 266 (266)
T ss_dssp EEEEECCSCGGGHHHHHHHTTHHHHHHHHTTC
T ss_pred EEEcCCCchHHHHHHHHHHCCcHHHHHHHhCC
Confidence 99999999999999999999999999999986
|
| >d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.7e-140 Score=1033.82 Aligned_cols=267 Identities=54% Similarity=0.912 Sum_probs=264.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
||||||||||+|||||||+|||||+|||++||+|+++|||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 2 ~kyifvtGGV~S~lGKGi~~asig~ll~~~g~~v~~~K~DpYlNvD~Gtm~P~eHGEVfVt~DG~EtDlDlG~YERfl~~ 81 (272)
T d1vcoa2 2 RKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYERFLDM 81 (272)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSSGGGSCSSTTSCCEECTTCCEECTHHHHHHHHHTS
T ss_pred ceEEEEeCCcccccccHHHHHHHHHHHHhCCCceeEEeeccceecCCCCCCchhhceEEEecccccccccccceeeccCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
+|+++||+||||||++||+|||+|+|||||||||||||||||+||+++|+ ..++||||||||||||||||+||+
T Consensus 82 ~l~~~~n~TtG~iy~~vi~kER~G~yLG~TVQvIPHvTdeIk~~I~~~a~------~~~~Di~ivEiGGTVGDiEs~pFl 155 (272)
T d1vcoa2 82 DLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVAE------EQKAEIVVVEVGGTVGDIESLPFL 155 (272)
T ss_dssp CCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCTTTHHHHHHHHHHHHHHH------HTTCSEEEEEECSCTTSSTTHHHH
T ss_pred CCcCccchhHHHHHHHHHHHHhhCCccccccccCCcchHHHHHHHHhccc------CCCCCEEEEeccceecccchhhHH
Confidence 99999999999999999999999999999999999999999999999995 568999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCC
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~ 240 (524)
||+||||+++|++|+||||||||||++++||+||||||||||+|||+|||||+|+|||+.+++++.|+||||||+|++++
T Consensus 156 EAiRQl~~e~g~~n~~~iHvtlvP~~~~~gE~KTKPTQhSVk~Lr~~GIqPDilvcRse~~l~~~~k~KIslFcnV~~~~ 235 (272)
T d1vcoa2 156 EAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGH 235 (272)
T ss_dssp HHHHTHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHHTTCCCSEEEEEESSCCCHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHhhcCCCcEEEEeeeeeeecccccccccCchhHHHHHHHhcCCCCceeeeccCCcCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHhhcCCC
Q 009814 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQ 273 (524)
Q Consensus 241 Vi~i~dvdtiy~vpl~LreqG~~~~i~~~l~l~ 273 (524)
||+++|++|||+||+.|++||+++.++++|+|+
T Consensus 236 VI~~~Dv~sIYeVPl~L~~qgl~~~I~~~L~L~ 268 (272)
T d1vcoa2 236 VFSSPTVEHLYEVPLLLEEQGLGRAVERALGLE 268 (272)
T ss_dssp EEEEECCSCTTHHHHHHHHHTHHHHHHHHTTCC
T ss_pred EEEcCCcccHHHHHHHHHHCCchHHHHHHcCCC
Confidence 999999999999999999999999999999997
|
| >d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.8e-66 Score=510.21 Aligned_cols=216 Identities=47% Similarity=0.766 Sum_probs=198.2
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
++++|||||||+++.|||.||.+||+|||+.+++++++.||++++++.++ +|+.|+++|||+||||||.|
T Consensus 2 k~v~IaiVGKY~~l~DaY~Si~eAL~hA~~~~~~~v~i~wi~s~~l~~~~----------~~~~L~~~dGIlvPGGFG~r 71 (250)
T d1vcoa1 2 RTVKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAAD----------LEEAFRDVSGILVPGGFGVR 71 (250)
T ss_dssp EEEEEEEEESCC---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CC----------HHHHTTTCSCEEECCCCSST
T ss_pred ceEEEEEEeCCCCCchHHHHHHHHHHHhHHhcCCeEEEEEEcchhcchhh----------HHHHHhcCCeEEecCCCCcc
Confidence 46899999999999999999999999999999999999999999987643 46789999999999999999
Q ss_pred chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCC-CcCCCCCcccccceee
Q 009814 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRT 454 (524)
Q Consensus 376 g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~-~~~~~GgtmrLg~~~v 454 (524)
|++|+|.||+|||+++|||||||||||+|+||||||++||++|+|+||++++++||+++|+++ ....+|||||||+++|
T Consensus 72 G~eGki~ai~yARen~iPfLGIClGmQ~avIEfARnvlgl~~A~s~Ef~~~~~~pvi~~~~e~~~~~~~ggtmRLG~~~~ 151 (250)
T d1vcoa1 72 GIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPM 151 (250)
T ss_dssp THHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEE
T ss_pred chHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCeEEEeeccceeccccCccccccceee
Confidence 999999999999999999999999999999999999999999999999999999999999996 4678999999999999
Q ss_pred EeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCC-----CCeEEEEEECCCcEE-EEec
Q 009814 455 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-----SQRMEVWTFNYKIAV-LLNY 523 (524)
Q Consensus 455 ~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~d-----g~~VE~iE~~~hp~f-~vqy 523 (524)
.++++ |+++++|+ +..|.|||||||+|||+|++.++++||+|||+++| +++||+||+++|||| .|||
T Consensus 152 ~l~~~-S~~~~~Y~-~~~i~ERhRHRYevN~~y~~~le~~gl~~sg~~~d~~~~~~~lvEiiEl~~HPffvgvQf 224 (250)
T d1vcoa1 152 RIKPG-TLLHRLYG-KEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQS 224 (250)
T ss_dssp EECTT-SHHHHHHC-CSEEEEEEEESEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESS
T ss_pred eecCC-cHHHhhcc-ccEEeehcccceeechhhhHHHHhccccccccCcccccCCCCeEEEEECCCCCcEEEecC
Confidence 99999 99999996 88899999999999999999999999999999985 358999999999999 7887
|
| >d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.3e-65 Score=503.24 Aligned_cols=214 Identities=46% Similarity=0.742 Sum_probs=197.1
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg 376 (524)
+++||+||||+++.|+|.||.+||+|||+.+++++++.||++++++..+ ++.|+++|||+||||||.||
T Consensus 3 ev~Ia~vGKY~~l~DaY~Sv~eaL~ha~~~~~~~v~i~wi~s~~~e~~~-----------~~~L~~~dGIlvPGGFG~RG 71 (258)
T d1s1ma1 3 EVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRG-----------VEILKGLDAILVPGGFGYRG 71 (258)
T ss_dssp EEEEEEEESSCSSGGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHC-----------TTTTTTCSEEEECCCCSSTT
T ss_pred eeEEEEEeCcCCCchhHHhHHHHHHHhHHhcCCeEEEEEEccccccccc-----------cccccccccEEeecccCcCC
Confidence 4899999999999999999999999999999999999999998875422 35789999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCC-----------cCCCCC
Q 009814 377 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-----------KTHMGG 445 (524)
Q Consensus 377 ~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~-----------~~~~Gg 445 (524)
++|+|.||+|||++++||||||||||+|+||||||++|+++|+|+||++++++||+.+|+++. ...+||
T Consensus 72 ~eGki~ai~yARen~iPfLGIClGmQ~avIE~ARnvlg~~~A~S~Ef~p~t~~pvi~~~~~~~~~~~~~~~~~~~~~~Gg 151 (258)
T d1s1ma1 72 VEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGG 151 (258)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCCCCCCCEEEecccccccCCceeEeecccCccc
Confidence 999999999999999999999999999999999999999999999999999999999998752 245899
Q ss_pred cccccceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEE-EEec
Q 009814 446 TMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAV-LLNY 523 (524)
Q Consensus 446 tmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f-~vqy 523 (524)
|||||+++|.+.++ |+++++|+ +..|.|||||||||||+|++.|++.||+|||+++|+++||+||+++|||| .|||
T Consensus 152 TmrlG~~~~~l~~~-s~~~~~Y~-~~~i~ERHRHRYevN~~y~~~le~~gl~~sG~s~dg~~vEiiEl~~HPffvg~Qf 228 (258)
T d1s1ma1 152 TMRLGAQQCQLVDD-SLVRQLYN-APTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQF 228 (258)
T ss_dssp CCEEEEEEEEECTT-CHHHHHTT-SSEEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESS
T ss_pred cccCcccchhhhhH-HHHHHhcC-cceehhhhhcchhhhhhhhhhhhcCCceeeeecCCCCeEEEEEeCCCCeEEEecC
Confidence 99999999999999 99999996 88899999999999999999999999999999999999999999999955 6787
|
| >d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=8.5e-23 Score=198.21 Aligned_cols=160 Identities=24% Similarity=0.299 Sum_probs=119.3
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhc-cCCCEEEECCCCCCC
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL-KGADGILVPGGFGNR 375 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l-~~~DGIllpGGfG~r 375 (524)
..+|+++ ||+ +++|+++.|+..|+.+.+. +.+.- +++.+ .++||||||||||+|
T Consensus 39 ~~~i~~~-D~G----~k~~ilr~l~~~~~~~~v~------p~~~~--------------~~~i~~~~pdgivlS~GPg~P 93 (228)
T d1a9xb2 39 PFHVVAY-DFG----AKRNILRMLVDRGCRLTIV------PAQTS--------------AEDVLKMNPDGIFLSNGPGDP 93 (228)
T ss_dssp CEEEEEE-ESS----CCHHHHHHHHHTTEEEEEE------ETTCC--------------HHHHHTTCCSEEEECCCSBCS
T ss_pred cceEEEE-eCC----CcHHhHhHHHhcCceEEEc------CCCCC--------------HHHHHhcCCCEEEEeCCCCcc
Confidence 5789999 588 8899999999999998775 33210 12333 489999999999999
Q ss_pred ch-hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceee
Q 009814 376 GV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 454 (524)
Q Consensus 376 g~-eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v 454 (524)
.. ...+++++++.+.++|+||||||||+|+.+||++|.+++..++ |. ++++
T Consensus 94 ~~~~~~~~~~~~~~~~~iPILGIClG~Qlia~~~Gg~v~k~~~~~~-----------------------G~-----~~~~ 145 (228)
T d1a9xb2 94 APCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHH-----------------------GG-----NHPV 145 (228)
T ss_dssp TTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHHTTCCEEEEEEEEE-----------------------EE-----EEEE
T ss_pred ccchhHHHHHHHHHhCCCCEEEEEcChHHHHHHcCCceeecccccc-----------------------cc-----cccc
Confidence 54 4567889999999999999999999999999999977655333 11 1222
Q ss_pred EeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 455 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 455 ~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
..... . .++ +. .++|+|.+....+ ..++.+++.+.++..+|+++++++|+|+|||
T Consensus 146 ~~~~~-~---~~~-----~~-~~~~~~~~~~~~~----~~~~~v~~~s~~d~~i~ai~h~~~~i~gVQF 200 (228)
T d1a9xb2 146 KDVEK-N---VVM-----IT-AQNHGFAVDEATL----PANLRVTHKSLFDGTLQGIHRTDKPAFSFQG 200 (228)
T ss_dssp EETTT-T---EEE-----EE-EEEEEEEECSTTC----CTTEEEEEEETTTCCEEEEEESSSSEEEESS
T ss_pred ccccc-c---eee-----ee-cccccceeccccc----ccceEEEEEecCCCcEEEEEECCCCEEEEeC
Confidence 22222 1 112 22 3678887765433 2467889999888889999999999999998
|
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.78 E-value=6.4e-19 Score=165.72 Aligned_cols=163 Identities=21% Similarity=0.327 Sum_probs=111.6
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
.+|++| ||+.- .-.++.++|+..|+++.+. +.+ . ++ +.+.++||||+|||++..
T Consensus 2 ~ki~ii-D~g~~--~~~~i~r~l~~lg~~~~i~------~~d-~-------~~-------~~~~~~dgiIl~Gg~~~~~~ 57 (196)
T d2a9va1 2 LKIYVV-DNGGQ--WTHREWRVLRELGVDTKIV------PND-I-------DS-------SELDGLDGLVLSGGAPNIDE 57 (196)
T ss_dssp CBEEEE-EESCC--TTCHHHHHHHHTTCBCCEE------ETT-S-------CG-------GGGTTCSEEEEEEECSCGGG
T ss_pred CEEEEE-ECCCc--HHHHHHHHHHHCCCeEEEE------eCC-C-------CH-------HHHhcCCcEEEecccccccc
Confidence 579999 47621 1258899999999887764 222 1 11 457889999999998875
Q ss_pred chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeE
Q 009814 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 455 (524)
Q Consensus 376 g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~ 455 (524)
........++++.++++|+||||+|||+|+.++|+.+...... +.+| ..+.
T Consensus 58 ~~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~~gg~~~~~~~~-----------------------~~~~------~~~~ 108 (196)
T d2a9va1 58 ELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKHP-----------------------EFGK------TKVS 108 (196)
T ss_dssp TGGGHHHHHHHHHHCCSCEEEETHHHHHHHHHTTCEEEEEEEE-----------------------EEEE------EEEE
T ss_pred ccchhhhHHHHHhhcCceEEEeehhhhhhhhcccccccccccc-----------------------cccc------ceEE
Confidence 2334566777888999999999999999999999987543221 1111 1222
Q ss_pred eccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 456 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 456 l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
+...+.+...+ ...+.-.|.|+|+|.. + ..++++.+.+.++. +|+++++++|+|+|||
T Consensus 109 ~~~~~~l~~~~---~~~~~~~~~H~~~v~~-----~-~~~~~v~a~~~~~~-v~ai~~~~~~i~gvQf 166 (196)
T d2a9va1 109 VMHSENIFGGL---PSEITVWENHNDEIIN-----L-PDDFTLAASSATCQ-VQGFYHKTRPIYATQF 166 (196)
T ss_dssp ESCCCGGGTTC---CSEEEEEEEEEEEEES-----C-CTTEEEEEECSSCS-CSEEEESSSSEEEESS
T ss_pred EecCCccccCC---CCceEEEecceeEEEe-----C-CCccceeecccccc-hheEEECCCCEEEEEe
Confidence 22221222122 1234445889988742 1 35899999988776 9999999999999998
|
| >d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.76 E-value=4.5e-18 Score=159.06 Aligned_cols=167 Identities=13% Similarity=0.128 Sum_probs=105.8
Q ss_pred EEEEEeccCCCcchH-HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHH-hccCCCEEEECCCCCCCc
Q 009814 299 RIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRG 376 (524)
Q Consensus 299 ~IaiVGkY~~~~day-~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~-~l~~~DGIllpGGfG~rg 376 (524)
.|.+|+.|. +| .++.++|++.|+++.+. +.++.. + .+ ...++|||+++||||++.
T Consensus 3 ~~liiD~~d----sft~Ni~~~l~~lG~~~~vi------~~d~~~-------~------~~i~~~~~~gvilsgGp~~~~ 59 (195)
T d1qdlb_ 3 LTLIIDNYD----SFVYNIAQIVGELGSYPIVI------RNDEIS-------I------KGIERIDPDRLIISPGPGTPE 59 (195)
T ss_dssp EEEEEECSC----SSHHHHHHHHHHTTCEEEEE------ETTTSC-------H------HHHHHHCCSEEEECCCSSCTT
T ss_pred EEEEEECCC----chHHHHHHHHHhCCCeEEEE------eCCCCC-------H------HHHHhhCCCccccCCCCCccc
Confidence 578887565 53 48889999999887664 333221 1 11 124789999999999983
Q ss_pred h---hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCccccccee
Q 009814 377 V---QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 453 (524)
Q Consensus 377 ~---eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~ 453 (524)
. .+....+..+.+.++|+||||||||+|+.++|+++.+.+..+.... + .
T Consensus 60 ~~~~~~~~~~i~~~~~~~~PiLGIClG~Qll~~~~G~~v~~~~~~~~~~~------~----------------------~ 111 (195)
T d1qdlb_ 60 KREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKI------S----------------------N 111 (195)
T ss_dssp SHHHHTTHHHHHHHHTTTSCEEEETHHHHHHHHHTTCEEEEEEEEEEEEE------E----------------------E
T ss_pred cccccccchhhhhhhcCCCCEEEeehhhhhhhhccCCEEEeecccccccc------c----------------------c
Confidence 3 2344566677788999999999999999999999976543221100 0 0
Q ss_pred eEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 454 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 454 v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
...... .......+-...++..+.|.+.+... ..+....+.+.++..+++++++++|+|+|||
T Consensus 112 ~~~~~~-~~~~lf~~~~~~~~~~~~h~~~~~~~------~~~~~~~~~~~~~~~i~ai~~~~~~i~GvQF 174 (195)
T d1qdlb_ 112 IILVNN-SPLSLYYGIAKEFKATRYHSLVVDEV------HRPLIVDAISAEDNEIMAIHHEEYPIYGVQF 174 (195)
T ss_dssp EEECCS-SCCSTTTTCCSEEEEEEEEEEEEECC------CTTEEEEEEESSSCCEEEEEESSSSEEEESS
T ss_pred cccccc-cccccccCCCccceeeecceeeeecc------ccCcccceeccCCCcEEEEEECCCCEEEEEc
Confidence 011010 00001111122344446677665321 2245666667666679999999999999998
|
| >d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Serratia marcescens [TaxId: 615]
Probab=99.74 E-value=1.1e-17 Score=157.05 Aligned_cols=165 Identities=11% Similarity=0.076 Sum_probs=108.3
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHh--ccCCCEEEECCCCCCCc
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPGGFGNRG 376 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~--l~~~DGIllpGGfG~rg 376 (524)
.|.+++.|.++ + .+|.+.|+..|+.+.+. +.+.- +....+. ..++|+|+++||||++.
T Consensus 2 niliiD~~DSF--t-~ni~~~l~~lG~~~~v~------~~~~~-----------~~~~~~~l~~~~~~~iils~Gpg~~~ 61 (192)
T d1i7qb_ 2 DILLLDNVDSF--T-YNLVDQLRASGHQVVIY------RNQIG-----------AEVIIERLQHMEQPVLMLSPGPGTPS 61 (192)
T ss_dssp EEEEEECSCSS--H-HHHHHHHHHTTCEEEEE------ETTSC-----------HHHHHHHHHHCSSEEEEECCCSSCGG
T ss_pred cEEEEECCCcH--H-HHHHHHHHHCCCeEEEE------eCCCc-----------ccccHHHHHhcCCCeEEecCcccccc
Confidence 47889877643 2 47899999999887664 21110 0011122 24789999999999986
Q ss_pred hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccccceeeEe
Q 009814 377 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (524)
Q Consensus 377 ~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrLg~~~v~l 456 (524)
.......++.+.+.++|+||||||||+|+.++|+++.+++..+. |++ +.+..
T Consensus 62 ~~~~~~~i~~~l~~~iPiLGIClG~Q~la~~~Gg~v~~~~~~~~-----------------------g~~-----~~~~~ 113 (192)
T d1i7qb_ 62 EAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAGEILH-----------------------GKA-----SAIAH 113 (192)
T ss_dssp GSTTHHHHHHHHBTTBCEEEETHHHHHHHHHTTCEEEEEEEEEE-----------------------EEE-----EEEEE
T ss_pred ccccchhhHHhhhcCccEEeeeHHHHHHHHHCCCeEEECCcccc-----------------------cce-----EEEee
Confidence 55555667888899999999999999999999999976543211 211 11111
Q ss_pred ccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 457 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 457 ~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
. + +.+..-+ .......+.|++.+.. + ..++.+.+.+ ++.+|+++++++|+|+|||
T Consensus 114 ~-~-~~l~~~~--~~~~~~~~~h~~~~~~-----~-~~~~~~~a~~--~~~i~ai~~~~~~i~GvQF 168 (192)
T d1i7qb_ 114 D-G-EGMFAGM--ANPLPVARYHSLVGSN-----I-PADLTVNARF--GEMVMAVRDDRRRVCGFQF 168 (192)
T ss_dssp C-C-CGGGTTC--CSSEEEEEEEEEEEES-----C-CTTSEEEEEE--TTEEEEEEETTTTEEEESS
T ss_pred c-C-CCceeec--cccceEEeeccccccc-----c-cceeeeecCC--CCeeEEEEECCCCEEEEEe
Confidence 1 1 1111111 1122234668777643 1 3467777765 3569999999999999998
|
| >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: gamma-glutamyl hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=6.5e-18 Score=167.96 Aligned_cols=190 Identities=14% Similarity=0.106 Sum_probs=107.8
Q ss_pred CCeEEEEEeccCCC------cchH--HHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEE
Q 009814 296 EPVRIAMVGKYTGL------SDAY--LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGIL 367 (524)
Q Consensus 296 ~~v~IaiVGkY~~~------~day--~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIl 367 (524)
+++.|||+.....- ..+| .|.+++++++|+.+.. .|.+++. +. ..+.+..+||||
T Consensus 2 ~kPiIGI~~~~~~~~~~~~~~~~yi~~sYvk~ie~aGa~vvp----i~~~~~~----------~~---~~~~l~~idGil 64 (288)
T d1l9xa_ 2 KKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVP----VRLDLTE----------KD---YEILFKSINGIL 64 (288)
T ss_dssp CCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEE----ECSSCCH----------HH---HHHHHHHSSEEE
T ss_pred CCCEEEEeCCcccCcccccchHHHHHHHHHHHHHHCCCEEEE----ECCCCCH----------HH---HHHHHhhcCCeE
Confidence 35779988533211 1122 3668999999976543 2333221 11 124577899999
Q ss_pred ECCCCCCCchhHH---------HHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCC
Q 009814 368 VPGGFGNRGVQGK---------ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG 438 (524)
Q Consensus 368 lpGGfG~rg~eg~---------i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~ 438 (524)
+|||+.+....+. ....+.++++++|+||||+|||+|++++|+++........ + ...|+.... ..
T Consensus 65 lpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~~gG~~~~~~~~~~---~--~~~~~~~~~-~~ 138 (288)
T d1l9xa_ 65 FPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTV---D--VAMPLNFTG-GQ 138 (288)
T ss_dssp ECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEEEEEE---E--EEECCEECS-TT
T ss_pred ecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHHHHHHHHHhCCEeeccccCcC---C--cceeEEecC-CC
Confidence 9999876432211 2223445667799999999999999999998754221110 0 111111111 00
Q ss_pred CcCCCCCcccccceeeEeccCCcccccccCCcceeeeeeccccccChhhH---HhhhcCCeEEEEEeCCCC--eEEEEEE
Q 009814 439 SKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMI---ARLENAGLSFTGKDETSQ--RMEVWTF 513 (524)
Q Consensus 439 ~~~~~GgtmrLg~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v---~~l~~~Gl~~sg~~~dg~--~VE~iE~ 513 (524)
...++- ... +. ++...++. ...+. ++|+|.|++... ..+ ..++++++++.|+. .|+++|+
T Consensus 139 ~~~~~~-----~~~-----~~-~~~~~l~~-~~~~~--~~H~~~v~~~~~~~~~~l-~~~~~v~a~s~d~~~e~I~~ie~ 203 (288)
T d1l9xa_ 139 LHSRMF-----QNF-----PT-ELLLSLAV-EPLTA--NFHKWSLSVKNFTMNEKL-KKFFNVLTTNTDGKIEFISTMEG 203 (288)
T ss_dssp TTCSTT-----TTS-----CH-HHHHHHHH-SCCEE--EEEEEECBHHHHHTCHHH-HHHEEEEEEEESSSCEEEEEEEE
T ss_pred ccceeE-----eec-----cc-chhhhccC-CceEE--EecccEEEecccchhhhc-CCceEEEEEECCCCeEEEEEEEc
Confidence 001110 000 11 23333432 23343 557888876432 223 45899999999876 2555678
Q ss_pred CCCcEEEEec
Q 009814 514 NYKIAVLLNY 523 (524)
Q Consensus 514 ~~hp~f~vqy 523 (524)
+++|||+|||
T Consensus 204 ~~~pi~GvQf 213 (288)
T d1l9xa_ 204 YKYPVYGVQW 213 (288)
T ss_dssp SSSCEEEESS
T ss_pred CCCcEEEEEc
Confidence 8999999998
|
| >d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthetase species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1.3e-17 Score=157.17 Aligned_cols=98 Identities=18% Similarity=0.216 Sum_probs=73.2
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCch
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg~ 377 (524)
-||+++ ||+.- .-.+|.++|+..|+++.+. +.+.. + .......+|||+++||||.+..
T Consensus 6 ~kI~Ii-D~G~~--~~~~I~r~lr~lg~~~~I~------~~d~~--------~-----~~~~~~~~~giils~gp~~~~~ 63 (205)
T d1gpma2 6 HRILIL-DFGSQ--YTQLVARRVRELGVYCELW------AWDVT--------E-----AQIRDFNPSGIILSGGPESTTE 63 (205)
T ss_dssp SEEEEE-ECSCT--THHHHHHHHHHTTCEEEEE------ESCCC--------H-----HHHHHHCCSEEEECCCSSCTTS
T ss_pred CeEEEE-ECCch--HHHHHHHHHHHCCCEEEEE------CCCCC--------H-----HHHhhcCCCeEEecCCCCccch
Confidence 489999 58831 2356889999999987764 33211 0 0123458999999999999855
Q ss_pred hHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccC
Q 009814 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417 (524)
Q Consensus 378 eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~ 417 (524)
.+....++.+.+.++|+||||||||+|+.++|+++.+++.
T Consensus 64 ~~~~~~~~~~~~~~~PiLGIClG~Qlla~~~Gg~v~~~~~ 103 (205)
T d1gpma2 64 ENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNE 103 (205)
T ss_dssp TTCCCCCGGGGTSSSCEEEETHHHHHHHHHHTCEEECCSS
T ss_pred hhhhhHHHHHHhCCCCEEEeccchhhhhhhcCCccccccc
Confidence 5555567777888999999999999999999999866443
|
| >d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=7.1e-16 Score=144.29 Aligned_cols=85 Identities=20% Similarity=0.333 Sum_probs=63.3
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
++|+++ ||+. . ++.|+.++|+++|..+.. +.+.+.+.+ ....+|+||||| +|..
T Consensus 1 MKI~Ii-Dyg~-g-N~~si~~al~~~g~~~~~-~~~~~~~~~-------------------~~~~~D~lIlPG-~G~f~~ 56 (200)
T d1k9vf_ 1 MRIGII-SVGP-G-NIMNLYRGVKRASENFED-VSIELVESP-------------------RNDLYDLLFIPG-VGHFGE 56 (200)
T ss_dssp CEEEEE-CSSS-S-CCHHHHHHHHHHTTTSSS-CEEEEESSS-------------------CSCCCSEEEECC-CSCHHH
T ss_pred CEEEEE-eCCC-c-HHHHHHHHHHHhcccccc-ceEEEeCCh-------------------HhhccCeEEEcC-hHHHHH
Confidence 579999 6984 3 789999999999976653 233443321 245689999987 4431
Q ss_pred ---ch--hHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 376 ---GV--QGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 376 ---g~--eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
.+ .+.+++|+.+.++++|+||||+|||+|+-
T Consensus 57 ~~~~l~~~~~~~~i~~~~~~~~PiLGIClG~QlL~~ 92 (200)
T d1k9vf_ 57 GMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFE 92 (200)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTEE
T ss_pred HHHhhhcccccccccccccccceEEEEecceeEEee
Confidence 11 36688999999999999999999999983
|
| >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus subtilis [TaxId: 1423]
Probab=99.56 E-value=4.1e-15 Score=139.36 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=66.2
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCCc
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~rg 376 (524)
+++||++ +|- ++..|.+++|+.+|+++.+. .. | +.+.++||||||||+.+..
T Consensus 1 m~~igv~-~~~---G~~~~~~~al~~~G~~~~~i------~~-----------~-------~~l~~~D~lIlPGG~~~~~ 52 (195)
T d2nv0a1 1 MLTIGVL-GLQ---GAVREHIHAIEACGAAGLVV------KR-----------P-------EQLNEVDGLILPGGESTTM 52 (195)
T ss_dssp CCEEEEE-CSS---SCCHHHHHHHHHTTCEEEEE------CS-----------G-------GGGGGCSEEEECCSCHHHH
T ss_pred CcEEEEE-ecC---ChHHHHHHHHHHCCCcEEEE------CC-----------H-------HHHhhCCEEEECCCCccHH
Confidence 3689999 472 47789999999999876643 21 1 4678899999999875531
Q ss_pred -----hhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhcc
Q 009814 377 -----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR 410 (524)
Q Consensus 377 -----~eg~i~air~are~~iP~LGICLGmQll~ie~gr 410 (524)
..+..++|+.+.++++|+||||+|||+|+-++++
T Consensus 53 ~~~~~~~~~~~~I~~~~~~g~pilGIC~G~Qll~~~~~g 91 (195)
T d2nv0a1 53 RRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAG 91 (195)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBCCC-
T ss_pred HHHhhhchhcchhhhhhhhcceeeeccccHHHHHhhhcc
Confidence 2356788999999999999999999999854433
|
| >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein TM1158 species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=6.8e-14 Score=134.62 Aligned_cols=166 Identities=16% Similarity=0.160 Sum_probs=101.9
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r- 375 (524)
.++|.++ ...+..+ -.++.+.|+..|+++.+. ....-+ ..| +.+.++||||++|||.+.
T Consensus 3 ~mrvli~-qh~~~e~-~G~~~~~l~~~g~~~~~~------~~~~~~-----~~p-------~~l~~~d~iii~Ggp~~~~ 62 (230)
T d1o1ya_ 3 HVRVLAI-RHVEIED-LGMMEDIFREKNWSFDYL------DTPKGE-----KLE-------RPLEEYSLVVLLGGYMGAY 62 (230)
T ss_dssp CCEEEEE-CSSTTSS-CTHHHHHHHHTTCEEEEE------CGGGTC-----CCS-------SCGGGCSEEEECCCSCCTT
T ss_pred ceEEEEE-ECCCCCC-cHHHHHHHHHCCCEEEEE------ECCCCC-----cCC-------cchhhCCEEEEcCCCcccc
Confidence 4678888 4544332 235677788888876653 221110 011 346789999999998753
Q ss_pred ------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeeeeCCCCCcCCCCCcccc
Q 009814 376 ------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 449 (524)
Q Consensus 376 ------g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~l~~e~~~~~~GgtmrL 449 (524)
-+....+.++.+.++++|+||||+|||+|+.++|++|...+... + .
T Consensus 63 d~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~alGg~V~~~~~~~--~--------------------------~ 114 (230)
T d1o1ya_ 63 EEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGE--E--------------------------I 114 (230)
T ss_dssp CTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCC--E--------------------------E
T ss_pred cchhhhhhHHHHHHHHHHHHhcceEEEeecCHHHHHHHhccccccccccc--c--------------------------c
Confidence 24566788999999999999999999999999999986532211 0 0
Q ss_pred cceeeEeccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEEECCCcEEEEec
Q 009814 450 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWTFNYKIAVLLNY 523 (524)
Q Consensus 450 g~~~v~l~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE~~~hp~f~vqy 523 (524)
|.+.+.....+.+...+- .+..+ .|.|++.+. + ..+.++.+.+.+.. +++++.. +++++||
T Consensus 115 ~~~~~~~~~~~~l~~~~~-~~~~~--~~~H~d~~~------l-p~~~~~la~s~~~~-~qa~~~~--~~~g~Qf 175 (230)
T d1o1ya_ 115 GWYFVEKVSDNKFFREFP-DRLRV--FQWHGDTFD------L-PRRATRVFTSEKYE-NQGFVYG--KAVGLQF 175 (230)
T ss_dssp EEEEEEECCCCGGGTTSC-SEEEE--EEEESEEEC------C-CTTCEEEEECSSCS-CSEEEET--TEEEESS
T ss_pred cccccccccchhhhccCC-ccceE--EEecceeee------e-ccchhhhhhhcCCc-eEEEEec--CEeEEEe
Confidence 111222222212222221 12223 355654322 1 34678888777665 8999885 6899998
|
| >d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Pyridoxine biosynthesis protein 2, Pdx2 species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.52 E-value=4.8e-15 Score=139.66 Aligned_cols=88 Identities=15% Similarity=0.242 Sum_probs=62.5
Q ss_pred CeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 009814 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (524)
Q Consensus 297 ~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r- 375 (524)
+++||+++ + ++++.|..++|+++|.... ++.|+.. | ++|.++||||||||+...
T Consensus 2 ~ikIGvl~-l---~G~~~~~~~al~~lg~~~~---~v~~~~~-----------~-------~~l~~~D~lIlPGgg~~~~ 56 (218)
T d2abwa1 2 EITIGVLS-L---QGDFEPHINHFIKLQIPSL---NIIQVRN-----------V-------HDLGLCDGLVIPGGESTTV 56 (218)
T ss_dssp CEEEEEEC-T---TSCCHHHHHHHHTTCCTTE---EEEEECS-----------H-------HHHHTCSEEEECCSCHHHH
T ss_pred CCEEEEEe-C---CCcHHHHHHHHHHcCCCce---EEEEeCC-----------H-------HHHhhCCEEEEcCCCccHH
Confidence 58999994 5 4599999999999997532 2344431 1 568899999999975421
Q ss_pred ------chhHHHHHH-HHHHHcCCCEEEEhHhHHHHHHHhc
Q 009814 376 ------GVQGKILAA-KYAREHRIPYLGICLGMQVAVIEFA 409 (524)
Q Consensus 376 ------g~eg~i~ai-r~are~~iP~LGICLGmQll~ie~g 409 (524)
...+..+++ +.+++.++|+||||+|||+|+-+.+
T Consensus 57 ~~~~~~~~~~~~~~i~~~~~~~gkPilGIC~G~QlL~~~~~ 97 (218)
T d2abwa1 57 RRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVE 97 (218)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEEEE
T ss_pred HHHHHHHhccchHHHHHHHHHcCCeEEEecHHHHHHHHhcc
Confidence 123444444 4556689999999999999985443
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.49 E-value=2.5e-14 Score=134.53 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=66.3
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r 375 (524)
..++|+|+ +|. .++.|+.++|+.+|+++.+. + +| +.+.++||||||||+.+.
T Consensus 5 ~~mkIgii-~~~---Gn~~s~~~al~~~G~~~~~v------~-----------~~-------~~l~~~D~lIlPGG~~~~ 56 (202)
T d1q7ra_ 5 SNMKIGVL-GLQ---GAVREHVRAIEACGAEAVIV------K-----------KS-------EQLEGLDGLVLPGGESTT 56 (202)
T ss_dssp CCCEEEEE-SCG---GGCHHHHHHHHHTTCEEEEE------C-----------SG-------GGGTTCSEEEECCCCHHH
T ss_pred cCCEEEEE-ECC---CCHHHHHHHHHHCCCcEEEE------C-----------CH-------HHHhcCCEEEECCCCcHH
Confidence 45899999 572 48999999999999887654 1 12 467899999999987654
Q ss_pred ch-----hHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 376 GV-----QGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 376 g~-----eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.. .+..++|+.+.++++|+||||+|||+|+
T Consensus 57 ~~~~l~~~~l~~~I~~~~~~gkPiLGIClG~Qll~ 91 (202)
T d1q7ra_ 57 MRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLA 91 (202)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHE
T ss_pred HHHHhhhhHHHHHHhhhccccceeeeeehhhHHhh
Confidence 22 3557889999999999999999999987
|
| >d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=99.39 E-value=6.6e-13 Score=121.51 Aligned_cols=81 Identities=28% Similarity=0.428 Sum_probs=63.5
Q ss_pred eEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 009814 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (524)
Q Consensus 298 v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~r-- 375 (524)
++|+|+ ||+. + +..||.++|+..|+++.+. . +| +.++++|++++|||+...
T Consensus 1 Mki~Ii-D~G~-g-N~~si~~~l~~lg~~~~i~------~-----------~~-------~~i~~~d~lIlpG~g~~~~~ 53 (195)
T d1ka9h_ 1 MKALLI-DYGS-G-NLRSAAKALEAAGFSVAVA------Q-----------DP-------KAHEEADLLVLPGQGHFGQV 53 (195)
T ss_dssp CEEEEE-CSSC-S-CHHHHHHHHHHTTCEEEEE------S-----------ST-------TSCSSCSEEEECCCSCHHHH
T ss_pred CEEEEE-eCCC-c-HHHHHHHHHHHCCCeEEEE------C-----------CH-------HHHHHHhhhhcCCCccccch
Confidence 479999 6983 3 7899999999999887764 1 11 357789999999976432
Q ss_pred ----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 376 ----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 376 ----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
...+....+....+.++|+||||+|||+|+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~g~pilGiClG~qll~ 87 (195)
T d1ka9h_ 54 MRAFQESGFVERVRRHLERGLPFLGICVGMQVLY 87 (195)
T ss_dssp HHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTS
T ss_pred hhhccccCCcccccccccccchhhhhhhhhheee
Confidence 123566788888889999999999999997
|
| >d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small subunit N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: Carbamoyl phosphate synthetase, small subunit N-terminal domain family: Carbamoyl phosphate synthetase, small subunit N-terminal domain domain: Carbamoyl phosphate synthetase, small subunit N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=7.2e-12 Score=113.24 Aligned_cols=84 Identities=17% Similarity=0.202 Sum_probs=73.5
Q ss_pred EEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccccccCCCCCCCeeecCCCCccchhhHH
Q 009814 177 LIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLL 256 (524)
Q Consensus 177 ~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~~~~l~~~~r~KisLf~~v~~~~Vi~i~dvdtiy~vpl~ 256 (524)
.|-+---|.++.-|= .-.+.||.+|++.++|||+.+..+||||++.+|.+||++++|++|.||||| +|+++
T Consensus 50 Qii~fT~P~IGNyG~--------n~~d~ES~~~~~~GlIV~e~~~~pSn~rs~~sL~~~L~~~~IpgI~gIDTR-aLtr~ 120 (151)
T d1a9xb1 50 QIVTLTYPHIGNVGT--------NDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTR-KLTRL 120 (151)
T ss_dssp EEEEECSSBCCTTCC--------CGGGCSSSSCCBSEEECSBCCSCCCCTTCCSCHHHHHHHTTCEEEESSCHH-HHHHH
T ss_pred ceEEeeehhcccccC--------CccchhhccccccchhccCccccCCcccccCCHHHHHHHcCCccccccCHH-HHHHH
Confidence 344444677766663 236899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHhhhHHHHHhh
Q 009814 257 LRDQKAHEAIFKV 269 (524)
Q Consensus 257 LreqG~~~~i~~~ 269 (524)
||++|+|++++..
T Consensus 121 iR~~G~~~g~I~~ 133 (151)
T d1a9xb1 121 LREKGAQNGCIIA 133 (151)
T ss_dssp HHHHCCEEEEEEE
T ss_pred HHhcCCceEEEec
Confidence 9999999998743
|
| >d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: HTS-like domain: Homoserine O-succinyltransferase HTS (MetA) species: Bacillus cereus [TaxId: 1396]
Probab=98.51 E-value=6.7e-07 Score=87.81 Aligned_cols=129 Identities=13% Similarity=0.072 Sum_probs=81.5
Q ss_pred cCCCEEEECCCCCCC-------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHHhccccccccCCCCcccCCCCCCCeee
Q 009814 361 KGADGILVPGGFGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVI 433 (524)
Q Consensus 361 ~~~DGIllpGGfG~r-------g~eg~i~air~are~~iP~LGICLGmQll~ie~gr~v~gl~~a~S~Ef~~~~~~pVi~ 433 (524)
.++||+||.|+|-.. -+....+.++++.++++|+||||+|+|+++-++++.+-.... ..
T Consensus 82 ~~fDglIITGap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~lgGi~k~~~~--~k------------ 147 (281)
T d2ghra1 82 EKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLK--EK------------ 147 (281)
T ss_dssp CCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEE--EE------------
T ss_pred ccCCEEEEeCCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHHhCCCccccCC--Cc------------
Confidence 569999999998542 346788899999999999999999999999999886521100 00
Q ss_pred eCCCCCcCCCCCcccccceeeEe-ccCCcccccccCCcceeeeeeccccccChhhHHhhhcCCeEEEEEeCCCCeEEEEE
Q 009814 434 FMPEGSKTHMGGTMRLGSRRTYF-QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEVWT 512 (524)
Q Consensus 434 l~~e~~~~~~GgtmrLg~~~v~l-~~g~s~~~~iYg~~~~I~erhrHrYeVn~~~v~~l~~~Gl~~sg~~~dg~~VE~iE 512 (524)
..|.++..+ .+...++..+ .+.+.--|-|--+++.+.+.. ..++.+.+.+.+.. +-++.
T Consensus 148 --------------~~Gv~~~~~~~~~~pL~~g~---~d~f~~p~Sr~~~~~~d~v~~--~p~l~vLa~S~~~g-~~~~~ 207 (281)
T d2ghra1 148 --------------MFGVFEHEVREQHVKLLQGF---DELFFAPHSRHTEVRESDIRE--VKELTLLANSEEAG-VHLVI 207 (281)
T ss_dssp --------------EEEEEEEEECCSSCGGGTTC---CSEEEEEEEEEEECCHHHHHT--CTTEEEEEEETTTE-EEEEE
T ss_pred --------------eEEEEEEeeccCCChhccCC---cchhheeeeecccCCHHHHhh--CCCceEEeecCCcc-cEEEE
Confidence 011121111 1110111111 122222243334555555543 35788888887766 77888
Q ss_pred ECCCcEEEEec
Q 009814 513 FNYKIAVLLNY 523 (524)
Q Consensus 513 ~~~hp~f~vqy 523 (524)
.++..++.+|+
T Consensus 208 ~~~~~~~~iQg 218 (281)
T d2ghra1 208 GQEGRQVFALG 218 (281)
T ss_dssp EGGGTEEEECS
T ss_pred ECCCCEEEEeC
Confidence 88889999986
|
| >d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: FGAM synthase PurL, amidotransferase domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.28 E-value=3.8e-07 Score=88.79 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=57.0
Q ss_pred CCeEEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccccccCCChhhhhHHHHhccCCCEEEECCCCCC-
Q 009814 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN- 374 (524)
Q Consensus 296 ~~v~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~~~~~~p~~y~~~~~~l~~~DGIllpGGfG~- 374 (524)
+++||+++--++ .. .-.....||+.+|+++... |+. ++-... ..|.++|+|++||||..
T Consensus 5 ~kpkvaVl~~pG-tN-cd~e~~~Af~~aG~~~~~v----~~~--dl~~~~------------~~L~~~~~lvipGGFSyg 64 (262)
T d1t3ta2 5 ARPKVAVLREQG-VN-SHVEMAAAFHRAGFDAIDV----HMS--DLLGGR------------IGLGNFHALVACGGFSYG 64 (262)
T ss_dssp CCCEEEEEECTT-BC-CHHHHHHHHHHTTCEEEEE----EHH--HHHHTS------------CCGGGCSEEEECCBCGGG
T ss_pred CCCeEEEEeCCC-CC-cHHHHHHHHHHcCCceEEE----Eee--ecccCc------------ccccccceEEEecccccc
Confidence 467999995344 22 4566778999999887653 332 211000 24789999999999854
Q ss_pred -C--chhH----------HHHHHHHH-HHcCCCEEEEhHhHHHHH
Q 009814 375 -R--GVQG----------KILAAKYA-REHRIPYLGICLGMQVAV 405 (524)
Q Consensus 375 -r--g~eg----------~i~air~a-re~~iP~LGICLGmQll~ 405 (524)
. .-.+ ...++... .+.+.|+||||-|+|+|+
T Consensus 65 D~l~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQiL~ 109 (262)
T d1t3ta2 65 DVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMS 109 (262)
T ss_dssp GTTSTTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHHHHH
T ss_pred ccccchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechHHHHHH
Confidence 2 1111 11122222 245799999999999997
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00057 Score=61.06 Aligned_cols=176 Identities=15% Similarity=0.064 Sum_probs=97.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerf~~~ 80 (524)
.|-+|||| .=+|+||=.+++.|++.|.++|+||..+|.||.-|...........-..+....+.+.+. .....
T Consensus 1 ~~~~~i~g-t~~GVGKTtvs~~La~aLa~~G~rVl~id~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 73 (224)
T d1byia_ 1 SKRYFVTG-TDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDY------ATVNP 73 (224)
T ss_dssp CEEEEEEE-SSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTCSSCCCH------HHHCS
T ss_pred CceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEECccccCCCCCCCCcchhHHHHHHHhhccCccc------ccccc
Confidence 47788986 446999999999999999999999999999998776555433322222111111111111 11111
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 009814 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (524)
Q Consensus 81 ~~~~~~n~t~g~iy~~vi~ker~g~ylg~tvqviphit~ei~~~i~~~~~~~~d~~~~~~d~~i~eiggtvgdies~pf~ 160 (524)
. ... +..... ....+ ...+.-...+.+..+..+ ..+|++++|-.+.+.+-.....
T Consensus 74 ~-~~~-~~~~~~----~~~~~----------~~~~~~~~~~~~~~~~~~--------~~~d~~~~~~~~~~~~~~~~~~- 128 (224)
T d1byia_ 74 Y-TFA-EPTSPH----IISAQ----------EGRPIESLVMSAGLRALE--------QQADWVLVEGAGGWFTPLSDTF- 128 (224)
T ss_dssp E-EES-SCSCHH----HHHHH----------HTCCCCHHHHHHHHHHHH--------TTCSEEEEECSSSTTCEEETTE-
T ss_pred c-ccc-cchhhh----hhhhh----------hhhhhhHHHHHHHHhhhh--------hccceEeecccccccccccccc-
Confidence 1 111 111111 11111 112233445666666665 3689999998888766443332
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEec
Q 009814 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRS 218 (524)
Q Consensus 161 ea~rq~~~~~~~~n~~~ih~~~vp~~~~~~e~ktkptq~sv~~lrs~Gi~pd~lv~R~ 218 (524)
+..++..... ..++.+ .- .+..-.-.++-+++.++..|+...++|+-.
T Consensus 129 -~~~~~~~~~~-~~v~~V-----~~---~~~~~~~~~~~~~~~~~~~~~~~~gvv~N~ 176 (224)
T d1byia_ 129 -TFADWVTQEQ-LPVILV-----VG---VKLGCINHAMLTAQVIQHAGLTLAGWVAND 176 (224)
T ss_dssp -EHHHHHHHHT-CCEEEE-----EE---CSTTHHHHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred -hhhccccccc-ceeeEE-----Ee---eccchhHHHHHHHHHHhccCCccEEEEEeC
Confidence 2223333332 223332 21 233334455667778888999999998764
|
| >d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.0022 Score=59.75 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=39.5
Q ss_pred cCCCEEEECCCCCCC--------------chhHHHHHHHHHHHcCCCEEEEhHhHHHHHHH
Q 009814 361 KGADGILVPGGFGNR--------------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (524)
Q Consensus 361 ~~~DGIllpGGfG~r--------------g~eg~i~air~are~~iP~LGICLGmQll~ie 407 (524)
.++|+|++|||+|.. -.+...+.++...++++|+..||-|-++++-+
T Consensus 84 ~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~ 144 (217)
T d1vhqa_ 84 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI 144 (217)
T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH
T ss_pred hHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 578999999999851 12457789999999999999999999999855
|
| >d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Catalase, C-terminal domain domain: Catalase, C-terminal domain species: Escherichia coli, HPII [TaxId: 562]
Probab=96.56 E-value=0.001 Score=58.36 Aligned_cols=101 Identities=15% Similarity=0.054 Sum_probs=62.1
Q ss_pred eEEEEEeccCCCcc-hHHHHHHHHHHcCCceeEEeeeEEeeCCCcccc-ccCCChh-hhhHHHHhccCCCEEEECCCCCC
Q 009814 298 VRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPACDLEDA-TEKENPD-AYKAAWKLLKGADGILVPGGFGN 374 (524)
Q Consensus 298 v~IaiVGkY~~~~d-ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~-~~~~~p~-~y~~~~~~l~~~DGIllpGGfG~ 374 (524)
.+||++- +....+ ......++|+.+|+.+.+. ......+... ...-.|. .+.+ .....+|+|+||||.++
T Consensus 4 rkVaiLv-~dg~~~~e~~~~~~~l~~ag~~v~~v----~~~~~~v~~~~G~~i~~d~t~~~--~~~~~yDaliiPGG~~~ 76 (156)
T d1p80a1 4 RVVAILL-NDEVRSADLLAILKALKAKGVHAKLL----YSRMGEVTADDGTVLPIAATFAG--APSLTVDAVIVPCGNIA 76 (156)
T ss_dssp CEEEEEC-CTTCCHHHHHHHHHHHHHHTCEEEEE----ESSSSEEECTTSCEEECCEETTT--SCGGGCSEEEECCSCTH
T ss_pred cEEEEEe-CCCCCHHHHHHHHHHHHHCCCEEEEE----ecccccccccceeEEeeeeeecc--CCcccCCEEEeeCCchH
Confidence 3777773 544443 3567789999999877653 1111111100 0000000 0100 01246899999999765
Q ss_pred C--chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 375 R--GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 375 r--g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
. ...-.+..++.+.++++|+..||-|.|+|+
T Consensus 77 ~l~~~~~~~~~i~e~~~~~K~I~aic~g~~~La 109 (156)
T d1p80a1 77 DIADNGDANYYLMEAYKHLKPIALAGDARKFKA 109 (156)
T ss_dssp HHHTCHHHHHHHHHHHHTTCCEEEEGGGGGGGG
T ss_pred HHhcchHHHHHHHHHHHcCCeEEEECchHHHHH
Confidence 3 335568889999999999999999999986
|
| >d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Intracellular protease species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.48 E-value=0.0021 Score=56.56 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=62.1
Q ss_pred eEEEEEeccCCCcch-HHHHHHHHHHcCCceeEEe-eeEEeeCCCccccccCCChhhhhHHHHh--ccCCCEEEECCCCC
Q 009814 298 VRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKL-VIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPGGFG 373 (524)
Q Consensus 298 v~IaiVGkY~~~~da-y~SI~~aL~~ag~~~~v~v-~i~~i~s~~le~~~~~~~p~~y~~~~~~--l~~~DGIllpGGfG 373 (524)
+||+++ =+.++.+. +....+.|+.+|+++.+.- +-..+.+.. ...-.|. ...+. ..++|+|++|||++
T Consensus 1 mKv~il-~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~V~~~~----g~~i~~d---~~~~~~~~~~~d~viipGg~~ 72 (166)
T d1g2ia_ 1 MKVLFL-TANEFEDVELIYPYHRLKEEGHEVYIASFERGTITGKH----GYSVKVD---LTFDKVNPEEFDALVLPGGRA 72 (166)
T ss_dssp CEEEEE-CCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTT----SCEEEEC---EEGGGCCGGGCSEEEECCBSH
T ss_pred CEEEEE-eCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCceEeecC----CcEEecc---ccHHHcCcccccEEEEecccc
Confidence 356666 35555543 3344688999998776531 111121111 0000010 00122 34689999999987
Q ss_pred CC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 374 NR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 374 ~r---g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
.. ..+..+..++.+.++++|+.+||-|-.+|+-
T Consensus 73 ~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~ 108 (166)
T d1g2ia_ 73 PERVRLNEKAVSIARKMFSEGKPVASICHGPQILIS 108 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCEEEETTTTHHHHH
T ss_pred hhhhccChHHHHHHHHHHhcCCeeeeccccchhhhh
Confidence 53 2356788999999999999999999999883
|
| >d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: DJ-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.23 E-value=0.007 Score=54.07 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=60.4
Q ss_pred EEEEEeccCCCcch-HHHHHHHHHHcCCceeEEeeeEEeeCC-Ccc-ccccCCChhhh-hHHHHhccCCCEEEECCCCCC
Q 009814 299 RIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPAC-DLE-DATEKENPDAY-KAAWKLLKGADGILVPGGFGN 374 (524)
Q Consensus 299 ~IaiVGkY~~~~da-y~SI~~aL~~ag~~~~v~v~i~~i~s~-~le-~~~~~~~p~~y-~~~~~~l~~~DGIllpGGfG~ 374 (524)
||+++ =|..+.+. .....+.|+.+|+++.+. ..... .+. .......|... .+. ....++|+|+||||++.
T Consensus 3 kvlvl-l~~Gfe~~E~~~p~~~l~~ag~~v~~~----s~~~~~~v~~~~g~~i~~d~~l~d~-~~~~~~D~liipGG~~~ 76 (186)
T d1p5fa_ 3 RALVI-LAKGAEEMETVIPVDVMRRAGIKVTVA----GLAGKDPVQCSRDVVICPDASLEDA-KKEGPYDVVVLPGGNLG 76 (186)
T ss_dssp EEEEE-ECTTCCHHHHHHHHHHHHHTTCEEEEE----ETTCSSCEECTTSCEECCSEEHHHH-HHTCCCSEEEECCCHHH
T ss_pred EEEEE-eCCCCCHHHHHHHHHHHHHCCCEEEEE----EecCCcceecCCCccccCccchhcc-CCcccccEEEEecCccc
Confidence 44444 24444433 345678999999887654 11111 111 01111111110 000 11247899999999764
Q ss_pred C----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 375 R----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 375 r----g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
+ ..+.....++.+.++++|+.+||-|-++|+-
T Consensus 77 ~~~l~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~ 112 (186)
T d1p5fa_ 77 AQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA 112 (186)
T ss_dssp HHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHH
T ss_pred cccccchHHHHHHHHHhhccccceeecccCcchhhh
Confidence 3 2356678899999999999999999999983
|
| >d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Catalase, C-terminal domain domain: Catalase, C-terminal domain species: Neurospora crassa [TaxId: 5141]
Probab=95.90 E-value=0.0052 Score=54.37 Aligned_cols=102 Identities=15% Similarity=0.053 Sum_probs=61.3
Q ss_pred eEEEEEeccCCCcc-hHHHHHHHHHHcCCceeEEeeeEEeeCCCcccc-ccCCChh-hhhHHHHhccCCCEEEECCCCCC
Q 009814 298 VRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPACDLEDA-TEKENPD-AYKAAWKLLKGADGILVPGGFGN 374 (524)
Q Consensus 298 v~IaiVGkY~~~~d-ay~SI~~aL~~ag~~~~v~v~i~~i~s~~le~~-~~~~~p~-~y~~~~~~l~~~DGIllpGGfG~ 374 (524)
.+|+++- |..+.+ ......+.|+.+|+.+.+. ......+... ...-.|. .+. .....++|++++|||++.
T Consensus 4 rkI~ilv-~dG~~~~e~~~~~~~l~~ag~~v~iv----s~~~~~v~~~~g~~v~~d~~~~--~~~~~~~dalivpgg~~~ 76 (184)
T d1sy7a1 4 RRVAIII-ADGYDNVAYDAAYAAISANQAIPLVI----GPRRSKVTAANGSTVQPHHHLE--GFRSTMVDAIFIPGGAKA 76 (184)
T ss_dssp CEEEEEC-CTTBCHHHHHHHHHHHHHTTCEEEEE----ESCSSCEEBTTSCEECCSEETT--TCCGGGSSEEEECCCHHH
T ss_pred cEEEEEe-cCCCcHHHHHHHHHHHHHCCCEEEEE----EecCCccccccccccccccccc--ccccccceEEEEeecccc
Confidence 3677773 554443 3456688999999876653 1111111100 0000000 000 001346799999999755
Q ss_pred C----chhHHHHHHHHHHHcCCCEEEEhHhHHHHHH
Q 009814 375 R----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (524)
Q Consensus 375 r----g~eg~i~air~are~~iP~LGICLGmQll~i 406 (524)
+ .....+..++.+.++++|+.+||-|-++|+-
T Consensus 77 ~~~~~~~~~~~~~l~~~~~~~k~i~aic~G~~~La~ 112 (184)
T d1sy7a1 77 AETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAK 112 (184)
T ss_dssp HHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHH
T ss_pred ccccccccchhHHHHHHHhcCCceEEechHHHHHHH
Confidence 3 2346678899999999999999999999874
|
| >d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein YhbO species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.0064 Score=53.76 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=61.0
Q ss_pred EEEEEeccCCCcch-HHHHHHHHHHcCCceeEEeee--EEeeCCCccccccCCChhhhhHHHHh--ccCCCEEEECCCCC
Q 009814 299 RIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVI--DWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPGGFG 373 (524)
Q Consensus 299 ~IaiVGkY~~~~da-y~SI~~aL~~ag~~~~v~v~i--~~i~s~~le~~~~~~~p~~y~~~~~~--l~~~DGIllpGGfG 373 (524)
+|+++- +....+. +....+.|+.+|+++.+.-.- .-+..+.- ...-.|. + ..+. ..++|+|++|||.|
T Consensus 3 kIail~-~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~---~~~v~~d-~--~l~~~~~~~yDalivpGG~~ 75 (170)
T d1oi4a1 3 KIAVLI-TDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKG---EASVTID-K--SIDEVTPAEFDALLLPGGHS 75 (170)
T ss_dssp EEEEEC-CTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTS---SCEEECC-E--EGGGCCGGGCSEEEECCBTH
T ss_pred EEEEEe-CCCcCHHHHHHHHHHHHHCCCEEEeccCCCCceeeeecc---CeEEecC-C--cHHHCChhhceEEEEccchh
Confidence 566663 5444443 445678899999877553110 00111110 0000000 0 0112 35789999999976
Q ss_pred CC---chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 374 NR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 374 ~r---g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.. .-+-.++.++...++++|+.+||-|-.+|+
T Consensus 76 ~~~l~~~~~~~~~i~~~~~~~k~i~aiC~g~~~La 110 (170)
T d1oi4a1 76 PDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLI 110 (170)
T ss_dssp HHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHH
T ss_pred hhhhccChHHHHHHHHHhhcCCeeeecccchHHHh
Confidence 53 335678889999999999999999999987
|
| >d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein Atu0886 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.12 E-value=0.012 Score=52.89 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=37.1
Q ss_pred cCCCEEEECCCCCCC--chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~r--g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.++|.|+||||.+.. ..+..++.+|.+.++++|+.+||-|-.+|+
T Consensus 62 ~~~D~liipGG~~~~~~~~~~l~~~lr~~~~~~~~i~aiC~g~~~La 108 (188)
T d2fexa1 62 VDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAASALG 108 (188)
T ss_dssp TTCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEEEETHHHHHHH
T ss_pred hhccEEEecCCccccccccHHHHHHHHHHHHhCCEEEEecchhHHHH
Confidence 468999999997642 223467889999999999999999999886
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=94.22 E-value=0.022 Score=52.83 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=38.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
||.|-|+| ==|.||=.+|+.||..|..+|+||-+|=+||+-|
T Consensus 1 mr~Iai~g--KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~~ 42 (269)
T d1cp2a_ 1 MRQVAIYG--KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKAD 42 (269)
T ss_dssp CEEEEEEE--CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred CCEEEEEC--CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 89999997 3488999999999999999999999999999866
|
| >d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: GK2698 ortholog species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.82 E-value=0.016 Score=53.46 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=38.8
Q ss_pred ccCCCEEEECCCCCC----CchhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 360 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~----rg~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
..++|+|++|||.|. +.-+.....++...++++|+..||-|-+++.
T Consensus 84 ~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~~l~ 133 (221)
T d1u9ca_ 84 AHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLV 133 (221)
T ss_dssp GSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGT
T ss_pred HhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeecccceeee
Confidence 357899999999984 3446677888999999999999999988776
|
| >d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Protein ThiJ (YajL) species: Escherichia coli [TaxId: 562]
Probab=93.26 E-value=0.017 Score=52.28 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=37.0
Q ss_pred ccCCCEEEECCCCCCC----chhHHHHHHHHHHHcCCCEEEEhHh-HHHHH
Q 009814 360 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLG-MQVAV 405 (524)
Q Consensus 360 l~~~DGIllpGGfG~r----g~eg~i~air~are~~iP~LGICLG-mQll~ 405 (524)
..++|+|++|||++.. ..+..+..+|.+.++++|+.+||-| -.+|+
T Consensus 63 ~~d~D~liiPGG~~~~~~l~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa 113 (195)
T d2ab0a1 63 DGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLV 113 (195)
T ss_dssp TSCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTT
T ss_pred cccceEEEEccccCccccccccHHHHHHHHHHhhccceeeeeeccchhhhh
Confidence 4679999999997643 2356678899999999999999999 56655
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.32 E-value=0.11 Score=44.26 Aligned_cols=40 Identities=23% Similarity=0.108 Sum_probs=36.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
||-|-||| .||-||=....-|-+.|+.+|++|.++|-|+-
T Consensus 1 Mkii~I~G--~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 1 MNVWQVVG--YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CCEEEEEC--CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CcEEEEEe--CCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence 78888999 89999999999999999999999999998873
|
| >d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein Ydr533Cp species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.34 E-value=0.05 Score=50.73 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=37.6
Q ss_pred cCCCEEEECCCCCC----CchhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 361 KGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 361 ~~~DGIllpGGfG~----rg~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
.++|+|++|||.|. +.-+...+.++.+.++++|+-.||-|-+++.
T Consensus 96 ~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~ 144 (236)
T d1qvwa_ 96 DDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFD 144 (236)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGT
T ss_pred hHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHH
Confidence 57899999999885 2345677889999999999999999987664
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=90.78 E-value=0.12 Score=47.79 Aligned_cols=43 Identities=30% Similarity=0.470 Sum_probs=38.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (524)
.||||++| =-|.||=.+|++++..|..+|+||-++=+||.-|.
T Consensus 8 p~~i~~sG--KGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~~~l 50 (296)
T d1ihua1 8 PPYLFFTG--KGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNV 50 (296)
T ss_dssp CSEEEEEC--STTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCH
T ss_pred CeEEEEEC--CCcChHHHHHHHHHHHHHHCCCCEEEEeCCCCCCH
Confidence 38999998 56889999999999999999999999999996544
|
| >d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: HSP31 (HchA; YedU) species: Escherichia coli [TaxId: 562]
Probab=89.73 E-value=0.084 Score=50.60 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=37.3
Q ss_pred CCCEEEECCCCCCC----chhHHHHHHHHHHHcCCCEEEEhHhHHHHH
Q 009814 362 GADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (524)
Q Consensus 362 ~~DGIllpGGfG~r----g~eg~i~air~are~~iP~LGICLGmQll~ 405 (524)
++|+|++|||.|.- ..+...+.++++.++++|+..||-|=..|.
T Consensus 141 dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll 188 (279)
T d1n57a_ 141 EYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFL 188 (279)
T ss_dssp SEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGG
T ss_pred cccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhh
Confidence 68999999999852 345677889999999999999999987664
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=89.73 E-value=0.16 Score=42.96 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=33.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
||.|+++|. +|-||...+.-|...|..+|+++..+.
T Consensus 1 mkiivi~G~--~GsGKTT~~~~La~~L~~~~~~~~~~~ 36 (194)
T d1nksa_ 1 MKIGIVTGI--PGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp CEEEEEEEC--TTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 899999996 599999999999999999999997665
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.83 E-value=0.63 Score=40.93 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=36.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (524)
|.|-|+|+- .|.||=.+|+.|+..|..+|++|.++-.||.
T Consensus 3 ~vIav~~~k-GGvGKTtia~nLA~~la~~g~~VlliD~D~~ 42 (237)
T d1g3qa_ 3 RIISIVSGK-GGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSS-TTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEECCC-CCCcHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 678888775 8999999999999999999999999999874
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.14 E-value=0.64 Score=40.94 Aligned_cols=42 Identities=29% Similarity=0.465 Sum_probs=37.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (524)
||-|.|+++- -|.||=.+|++|+..|..+|.+|..+=+||+-
T Consensus 1 ~kvIav~s~K-GGvGKTtia~nlA~~la~~g~~VlliD~D~~~ 42 (232)
T d1hyqa_ 1 VRTITVASGK-GGTGKTTITANLGVALAQLGHDVTIVDADITM 42 (232)
T ss_dssp CEEEEEEESS-SCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CEEEEEECCC-CCChHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 7889988653 57899999999999999999999999999874
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=83.24 E-value=0.71 Score=42.68 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=37.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (524)
||-|.|+| ==|.||=.+|+.||..|..+|+||-+|=+||.-|
T Consensus 2 Mr~Iaisg--KGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~~ 43 (289)
T d2afhe1 2 MRQCAIYG--KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKAD 43 (289)
T ss_dssp CEEEEEEE--CTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSC
T ss_pred ccEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCC
Confidence 78788885 3488999999999999999999999999999865
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=82.70 E-value=0.75 Score=41.92 Aligned_cols=43 Identities=28% Similarity=0.446 Sum_probs=34.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (524)
|.|+++| ==|.||=.+|++|+..|..+|+||-.+=+||.-|..
T Consensus 21 ~iii~sG--KGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~~l~ 63 (279)
T d1ihua2 21 GLIMLMG--KGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLS 63 (279)
T ss_dssp EEEEEEC--STTSSHHHHHHHHHHHHHHTTCCEEEEESCCC----
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCChH
Confidence 4566665 567899999999999999999999999999986654
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=81.15 E-value=0.45 Score=42.97 Aligned_cols=32 Identities=25% Similarity=0.562 Sum_probs=26.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 009814 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (524)
Q Consensus 1 ~k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k 38 (524)
||-|+||||- ||||+. +.+.|.+.|++|.+.=
T Consensus 1 mkVvlITGas-~GIG~a-----iA~~la~~Ga~V~~~~ 32 (257)
T d1fjha_ 1 MSIIVISGCA-TGIGAA-----TRKVLEAAGHQIVGID 32 (257)
T ss_dssp CCEEEEETTT-SHHHHH-----HHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCC-CHHHHH-----HHHHHHHCCCEEEEEE
Confidence 8999999997 888875 5678889999998763
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=80.60 E-value=2.4 Score=32.60 Aligned_cols=82 Identities=18% Similarity=0.110 Sum_probs=50.6
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcCCceeEEeeeEEeeCCCccc--cccCCChh---hhhHHHHhccCCCEEEECCCCC
Q 009814 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLED--ATEKENPD---AYKAAWKLLKGADGILVPGGFG 373 (524)
Q Consensus 299 ~IaiVGkY~~~~day~SI~~aL~~ag~~~~v~v~i~~i~s~~le~--~~~~~~p~---~y~~~~~~l~~~DGIllpGGfG 373 (524)
+|+++| .+ -+=.|+.+.|...|+++.+. |...-.+ ......-. ..+ ....+.++|-|++|.|..
T Consensus 7 ~v~ViG-lG---~sG~s~a~~L~~~g~~v~~~------D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~vi~SPGi~ 75 (93)
T d2jfga1 7 NVVIIG-LG---LTGLSCVDFFLARGVTPRVM------DTRMTPPGLDKLPEAVERHTGSL-NDEWLMAADLIVASPGIA 75 (93)
T ss_dssp CEEEEC-CS---HHHHHHHHHHHHTTCCCEEE------ESSSSCTTGGGSCTTSCEEESBC-CHHHHHHCSEEEECTTSC
T ss_pred EEEEEe-EC---HHHHHHHHHHHHCCCEEEEe------eCCcCchhHHHHhhccceeeccc-chhhhccCCEEEECCCCC
Confidence 689988 54 35578999999999988764 3321100 00000000 000 013456889999998864
Q ss_pred CCchhHHHHHHHHHHHcCCCEEE
Q 009814 374 NRGVQGKILAAKYAREHRIPYLG 396 (524)
Q Consensus 374 ~rg~eg~i~air~are~~iP~LG 396 (524)
.. ...+++|+++++|+.|
T Consensus 76 ~~-----~~~~~~a~~~gi~iiG 93 (93)
T d2jfga1 76 LA-----HPSLSAAADAGIEIVG 93 (93)
T ss_dssp TT-----SHHHHHHHHTTCEEEC
T ss_pred CC-----CHHHHHHHHcCCCeEC
Confidence 32 2578889999999986
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=80.04 E-value=0.58 Score=39.02 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=32.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 009814 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (524)
Q Consensus 2 k~i~vtggv~s~lgkgi~~~s~g~ll~~~g~~v~~~k~d 40 (524)
|.|+|+|. +|-||...+.-|...|+.+|+++..+-.+
T Consensus 2 kiI~i~G~--~GsGKsT~~~~L~~~l~~~~~~~~~~~~~ 38 (190)
T d1khta_ 2 KVVVVTGV--PGVGSTTSSQLAMDNLRKEGVNYKMVSFG 38 (190)
T ss_dssp CEEEEECC--TTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred CEEEEECC--CCCCHHHHHHHHHHHHHHcCCCeEEEecC
Confidence 78999995 78999999999999999999998876554
|