Citrus Sinensis ID: 009816
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 524 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C5L3 | 523 | Putative glycerol-3-phosp | yes | no | 0.965 | 0.967 | 0.732 | 0.0 | |
| Q9SA71 | 510 | Putative glycerol-3-phosp | no | no | 0.887 | 0.911 | 0.629 | 1e-176 | |
| Q9SB41 | 504 | Putative glycerol-3-phosp | no | no | 0.917 | 0.954 | 0.616 | 1e-175 | |
| O23596 | 544 | Putative glycerol-3-phosp | no | no | 0.942 | 0.908 | 0.562 | 1e-161 | |
| Q9SL56 | 493 | Putative glycerol-3-phosp | no | no | 0.853 | 0.906 | 0.561 | 1e-149 | |
| Q7SY29 | 494 | Sugar phosphate exchanger | yes | no | 0.835 | 0.886 | 0.496 | 1e-123 | |
| Q58CV5 | 491 | Sugar phosphate exchanger | yes | no | 0.858 | 0.916 | 0.492 | 1e-121 | |
| Q9WU81 | 501 | Sugar phosphate exchanger | no | no | 0.919 | 0.962 | 0.476 | 1e-120 | |
| Q8TED4 | 501 | Sugar phosphate exchanger | yes | no | 0.927 | 0.970 | 0.478 | 1e-119 | |
| Q8AVC3 | 499 | Sugar phosphate exchanger | N/A | no | 0.900 | 0.945 | 0.453 | 1e-114 |
| >sp|Q9C5L3|GLPT1_ARATH Putative glycerol-3-phosphate transporter 1 OS=Arabidopsis thaliana GN=At3g47420 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/520 (73%), Positives = 441/520 (84%), Gaps = 14/520 (2%)
Query: 1 MGSLSEPAPQRSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIV 60
MGSL + P+ +KP+GIRFLE IKG LS+ +QAIVLIVTF AY SYHAARKTTSIV
Sbjct: 1 MGSLMQSEPEME-KKPIGIRFLERIKGSKLSYSAYQAIVLIVTFLAYASYHAARKTTSIV 59
Query: 61 KSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFL 120
KS LDPQSPDT L SL R + S S K GWAPFNG DGT LLGE+D+AFL
Sbjct: 60 KSALDPQSPDTGLNSLLLRFT-------SFGSSVKEEGGWAPFNGPDGTVLLGEIDVAFL 112
Query: 121 SIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGL 180
++YA GM+F+GHLGDR++LRIFLTVGM+GTGLFTSL+G+GYWGN+HSFYY+L++QMLAGL
Sbjct: 113 AVYAFGMYFAGHLGDRMNLRIFLTVGMIGTGLFTSLFGVGYWGNIHSFYYFLIMQMLAGL 172
Query: 181 FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPG 240
FQS+GWPSVVAVVGNWF K KRGLIMGIWNAHTS+GNITGSL+A+A+L YGWGWSFVVPG
Sbjct: 173 FQSSGWPSVVAVVGNWFNKKKRGLIMGIWNAHTSVGNITGSLIAAAMLRYGWGWSFVVPG 232
Query: 241 LIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLL----RRETKIEEKA 296
+II +GL+ + FLPV+PE+VG + +E +S S +KIG V +PLL ET +++A
Sbjct: 233 VIIVVIGLVNYAFLPVSPENVGAERDEVLDS-SSEKIGNSVNEPLLLSSSDSETDDKKRA 291
Query: 297 VGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFD 356
VGFIEAW+IPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTA++G+YLS E AGNLST+FD
Sbjct: 292 VGFIEAWRIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAIEGEYLSDETAGNLSTMFD 351
Query: 357 VGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFV 416
VGGV+GGI+AG+ISDR+ ARAITAASFMYC+IPALFFYRSYGH+SL N +LMF+TGM V
Sbjct: 352 VGGVVGGIMAGYISDRIGARAITAASFMYCSIPALFFYRSYGHVSLLANASLMFLTGMLV 411
Query: 417 NGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWT 475
NGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAA+GPLLTGYIS+ SWT
Sbjct: 412 NGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAVGPLLTGYISSRGSWT 471
Query: 476 AVFTMLMAAALISGLLLTRLVVAEVAAKFVESRSQSGNQS 515
AVFTMLM AA ++GLLLTRLV+AEVA K ESR +S
Sbjct: 472 AVFTMLMGAAFVAGLLLTRLVMAEVAEKIAESRPSEECRS 511
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SA71|GLPT3_ARATH Putative glycerol-3-phosphate transporter 3 OS=Arabidopsis thaliana GN=At1g30560 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 617 bits (1591), Expect = e-176, Method: Compositional matrix adjust.
Identities = 308/489 (62%), Positives = 376/489 (76%), Gaps = 24/489 (4%)
Query: 15 KPLGIRFLECIKGR-NLSFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSL 73
KP GI FLE + LSFK +QA+V ++TF AY ++HA RK SIVK TL Q
Sbjct: 15 KPPGIHFLERFRRSGKLSFKQYQAMVFVLTFIAYIAFHATRKPNSIVKGTLSEQ------ 68
Query: 74 KSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHL 133
P K + K GWAPF+G DGTALLG++DLAFLS+YA GMF +GHL
Sbjct: 69 ------------PTGHFKGADK--GGWAPFDGPDGTALLGQIDLAFLSVYAVGMFVAGHL 114
Query: 134 GDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVV 193
GDRLDLR FLT+GMVGTG+ T+L+G+ +W N+H+FYY+L +Q LAG FQS GWP VVAV+
Sbjct: 115 GDRLDLRTFLTIGMVGTGVCTALFGVAFWANIHAFYYFLAIQTLAGWFQSIGWPCVVAVL 174
Query: 194 GNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLF 253
GNWF K +RG+IMG+W+AHTS+GNI G+L+A+ LL +GWGWSFV P L+I F+G++V+LF
Sbjct: 175 GNWFDKKRRGVIMGVWSAHTSLGNIIGTLIATGLLKFGWGWSFVGPALLITFLGIVVYLF 234
Query: 254 LPVNPESVGTDTNEEDESLSPKKIGEGVTQPLL--RRETKIEEKAVGFIEAWKIPGVAPF 311
LPVNP +V + + E S ++G+ +T+ L R T + +AVGF+ AWKIPGVAPF
Sbjct: 235 LPVNPHAVEAE-RDGSEVDSTMRLGDTITESFLSSRTSTGFDRRAVGFLAAWKIPGVAPF 293
Query: 312 ALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISD 371
A CLFF KLV+YTFLYWLPFYVS T + G+ LS E +GNLSTLFDVGGV+GGILAG+ SD
Sbjct: 294 AFCLFFTKLVSYTFLYWLPFYVSQTEIGGEQLSQETSGNLSTLFDVGGVVGGILAGYFSD 353
Query: 372 RLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADL 431
+LD RAITA F+Y IPALF YR YGH+S+ +NI LMF+ G+FVNGPYALITTAV+ADL
Sbjct: 354 QLDGRAITAGGFIYLTIPALFLYRIYGHVSMTINIILMFVAGLFVNGPYALITTAVAADL 413
Query: 432 GTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLL 491
GTH SLKGN+RALATVTAIIDGTGSVGAAIGP+LTGYI+A SW AVF MLM AALISGLL
Sbjct: 414 GTHKSLKGNARALATVTAIIDGTGSVGAAIGPVLTGYIAAISWDAVFYMLMTAALISGLL 473
Query: 492 LTRLVVAEV 500
LT L++ EV
Sbjct: 474 LTTLIIEEV 482
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SB41|GLPT2_ARATH Putative glycerol-3-phosphate transporter 2 OS=Arabidopsis thaliana GN=At4g25220 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 616 bits (1589), Expect = e-175, Method: Compositional matrix adjust.
Identities = 317/514 (61%), Positives = 390/514 (75%), Gaps = 33/514 (6%)
Query: 1 MGSLSEPAPQRSSRKPLGIRFLECIK--GRNLSFKNHQAIVLIVTFFAYTSYHAARKTTS 58
M S + KP GI+FLE K GR LSFK +QA+V I+TF AY ++HAARK S
Sbjct: 1 MASWTSSQFLYEETKPWGIQFLEKFKRSGR-LSFKQYQALVFILTFVAYIAFHAARKPNS 59
Query: 59 IVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLA 118
IVK TL + + GWAPF+G DGTALLG++DLA
Sbjct: 60 IVKGTLSASTIE---------------------------GGWAPFDGPDGTALLGQIDLA 92
Query: 119 FLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLA 178
FLS+YA GMF +GHLGDRLDLR FLT+GM+GTGLFT+L+G+ +W N HSFYY+L VQ++A
Sbjct: 93 FLSVYAVGMFVAGHLGDRLDLRTFLTIGMIGTGLFTALFGVAFWANFHSFYYFLAVQVMA 152
Query: 179 GLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVV 238
GLFQS GWP +VAV+GNWF K +RG+IMG+W+AHTS+GNI GSL+AS LL YGWGWSF+
Sbjct: 153 GLFQSIGWPCIVAVLGNWFDKKRRGMIMGVWSAHTSLGNIAGSLIASGLLRYGWGWSFLG 212
Query: 239 PGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLL--RRETKIEEKA 296
P ++ F+G++V+LFLPVNP +V + + E S ++G+ +T+ LL R T + KA
Sbjct: 213 PAFLMTFLGIVVYLFLPVNPPTVEAE-RDGTEIDSTMRLGDTITESLLESRMSTGFDRKA 271
Query: 297 VGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFD 356
VGF+ AWKIPGVAPFA CLFF KLV+YTFLYWLPFYVSH + G+YLS E +GNLST+FD
Sbjct: 272 VGFMAAWKIPGVAPFAFCLFFTKLVSYTFLYWLPFYVSHNMIGGEYLSEETSGNLSTIFD 331
Query: 357 VGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFV 416
VGGV+GG+LAG+ISD+L+ RAITAA FMY AIPALF YR +GH+SL +N+ LMF +G+F+
Sbjct: 332 VGGVVGGVLAGYISDQLNGRAITAAGFMYLAIPALFLYRVFGHISLTINVILMFTSGVFI 391
Query: 417 NGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTA 476
GP+ALITTAVSADLGTH SLKGN+RALATV+AIIDGTGSVGAAIGP+LTGYISA SW A
Sbjct: 392 IGPFALITTAVSADLGTHKSLKGNARALATVSAIIDGTGSVGAAIGPVLTGYISAISWDA 451
Query: 477 VFTMLMAAALISGLLLTRLVVAEVAAKFVESRSQ 510
VF MLM AALISGLLLT+L++AEV A S +
Sbjct: 452 VFYMLMTAALISGLLLTKLIIAEVKALLFGSEDE 485
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O23596|GLPT4_ARATH Putative glycerol-3-phosphate transporter 4 OS=Arabidopsis thaliana GN=At4g17550 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 568 bits (1463), Expect = e-161, Method: Compositional matrix adjust.
Identities = 294/523 (56%), Positives = 367/523 (70%), Gaps = 29/523 (5%)
Query: 10 QRSSRK-PLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQS 68
S RK P GI L ++GRN S K + +L +TF AY YHA+RK +SIVKS L P S
Sbjct: 3 MNSKRKTPPGIALLRRVRGRNWSPKTFRYAILFITFIAYACYHASRKPSSIVKSVLHPDS 62
Query: 69 ------PDTSLKSLPWRISYLQEPAE----SRKLSWKLGDGWAPFNGSDGTALLGELDLA 118
S K PW + + E L + GW PFNG DGT+ LGE+D+A
Sbjct: 63 STKPPQEHNSDKIYPWPMGNVFVKREIGDIDEVLLHRKSKGWEPFNGKDGTSRLGEIDVA 122
Query: 119 FLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLA 178
FL+ Y+ GM+ +GHLGD LDLR+FLT GM+G+G F L+G+GY+ N+H+F+++LV+QM A
Sbjct: 123 FLACYSIGMYVAGHLGDSLDLRLFLTWGMIGSGFFVGLFGMGYFWNIHAFWFFLVMQMAA 182
Query: 179 GLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVV 238
GLFQ+TGWPSVVAVVGNWFGK KRGLIMGIWNAHTS+GNI GSL+A+ +L YGWGWSF+
Sbjct: 183 GLFQATGWPSVVAVVGNWFGKRKRGLIMGIWNAHTSVGNICGSLIAAGVLEYGWGWSFIA 242
Query: 239 PGLIIAFVGLIVFLFLPVNPESVG-TDTNEEDESLSPKK-------------IGEGVTQP 284
PG +++ G++V+LFL PE VG D N +K +G V
Sbjct: 243 PGFVMSLGGVLVYLFLAAYPEDVGFPDINSNSGKFIKRKRDVEEEEEEVEEDLGTDVEGD 302
Query: 285 LLRRETKI----EEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDG 340
+++VG ++A IPGV PFALCLFF+KLVAYTFLYWLPFY+S T + G
Sbjct: 303 GEGSSGSGSGYENKRSVGLLQACMIPGVIPFALCLFFSKLVAYTFLYWLPFYLSQTTIGG 362
Query: 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHL 400
+Y+S + AGNLSTLFDVGG++GGIL G+ISD+ ARA TAA+FMY AIPA+ Y SYG +
Sbjct: 363 EYVSVKTAGNLSTLFDVGGIVGGILCGYISDKFKARATTAAAFMYAAIPAMLVYHSYGGV 422
Query: 401 SLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAA 460
S +NI LM + G+FVNGPYALITTAVSADLGTH SL+G+SRALATVTAIIDGTGS GAA
Sbjct: 423 SQTVNILLMMVAGLFVNGPYALITTAVSADLGTHKSLQGDSRALATVTAIIDGTGSAGAA 482
Query: 461 IGPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVVAEVAAK 503
+GPLLTG++S W AVF ML+ AL +GLLLTRLV+AE+ K
Sbjct: 483 LGPLLTGFLSTLGWQAVFYMLVVGALCAGLLLTRLVIAEIREK 525
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SL56|GLPT5_ARATH Putative glycerol-3-phosphate transporter 5 OS=Arabidopsis thaliana GN=At2g13100 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 529 bits (1363), Expect = e-149, Method: Compositional matrix adjust.
Identities = 269/479 (56%), Positives = 354/479 (73%), Gaps = 32/479 (6%)
Query: 31 SFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESR 90
+F HQ +VLI+TF AY S+HA+RK SIVKS L P S ++S
Sbjct: 24 TFTFHQILVLIITFTAYASFHASRKPPSIVKSVLGPPSLNSS------------------ 65
Query: 91 KLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGT 150
+ +GWAPFNG+ GT LGELDLAFLS YA GM+F+GHLGDR+DLR FL GM+G+
Sbjct: 66 ----SIDNGWAPFNGTQGTKRLGELDLAFLSSYALGMYFAGHLGDRIDLRYFLVFGMMGS 121
Query: 151 GLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWN 210
G+ T ++G+GYW NVH+ +Y+ VQ++ GLFQS GWP VV+VVGNW GK KRGLIMG+WN
Sbjct: 122 GILTLVFGLGYWMNVHTLGFYMSVQIVCGLFQSIGWPCVVSVVGNWCGKEKRGLIMGLWN 181
Query: 211 AHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDE 270
+HTS+GNI GS++AS++L +GWGWSFV+PG+++ G++VF+FL V+P +G + ++
Sbjct: 182 SHTSVGNILGSVIASSVLDFGWGWSFVLPGVLVLVSGVVVFMFLVVSPNDLGFEELGKEI 241
Query: 271 SLSPKKIGEGVTQPLLRRETK-------IEEK--AVGFIEAWKIPGVAPFALCLFFAKLV 321
+ +GE V + L + E + +++ A+GF+EAW++PGVAP+A CLFF+KLV
Sbjct: 242 EIE-MSLGENVEESLRKHEAEGAVLLENVDDSSFAIGFLEAWRLPGVAPYAFCLFFSKLV 300
Query: 322 AYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAA 381
AYTFLYWLP+Y+ HTAV G LS + AG LST+FDVGGVLGGI AG ISD++ ARA+T+
Sbjct: 301 AYTFLYWLPYYLRHTAVAGVNLSHKTAGILSTVFDVGGVLGGISAGFISDKIKARALTSI 360
Query: 382 SFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNS 441
+F+ +IPAL YR YG +S+ +NI LMFI+G+ VNGPYALITTAV+ADLGT S+KGN
Sbjct: 361 TFLALSIPALIMYRVYGSVSMFINIVLMFISGLLVNGPYALITTAVAADLGTQDSIKGNG 420
Query: 442 RALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVVAEV 500
RALATVTAIIDGTGSVGAA+GPLL GYIS+ W +VF ML+ + +GL L RL +E+
Sbjct: 421 RALATVTAIIDGTGSVGAALGPLLAGYISSRGWNSVFFMLIVSIFFAGLFLVRLAKSEI 479
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7SY29|SPX2_DANRE Sugar phosphate exchanger 2 OS=Danio rerio GN=slc37a2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 442 bits (1137), Expect = e-123, Method: Compositional matrix adjust.
Identities = 238/479 (49%), Positives = 301/479 (62%), Gaps = 41/479 (8%)
Query: 39 VLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGD 98
+L +TF YTSYH +RK SIVKS L S + PA
Sbjct: 24 ILFLTFVFYTSYHLSRKPISIVKSQLHRNC------------SNVVHPANLNITDNDTWC 71
Query: 99 GWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYG 158
W PF+G + L G LD FL YA GMFFSG G+RL LR +L+ GM+ +GLFT+L+G
Sbjct: 72 DWVPFDGKNYQNLFGVLDNCFLVAYAVGMFFSGIFGERLPLRYYLSTGMLLSGLFTALFG 131
Query: 159 IGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNI 218
+G++ +HS +YY +VQ L GL Q+TGWP+VVA VGNWFGK KRG IMG+WN+HTS+GNI
Sbjct: 132 LGFYWQIHSLWYYCLVQALNGLVQTTGWPAVVACVGNWFGKGKRGFIMGVWNSHTSVGNI 191
Query: 219 TGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIG 278
GSL+A ++ WG SF+VPG+IIA G+I FLFL PE V + E +
Sbjct: 192 LGSLIAGVYVSSAWGLSFIVPGIIIASTGVICFLFLVERPEDVNCTAPQHHERVE----- 246
Query: 279 EGVTQPLLRRETKIEE-----------------KAVGFIEAWKIPGVAPFALCLFFAKLV 321
+PLLR + EE +A+ F A +IPGV F+LCL FAKLV
Sbjct: 247 ---EEPLLRNSSTNEEIFNSHTSTAVEPVEDHSEAISFCGALRIPGVVEFSLCLLFAKLV 303
Query: 322 AYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAA 381
+YTFLYWLP Y+++ A + + AG+LSTLFDVGG+LGGI+AG +SD RA T
Sbjct: 304 SYTFLYWLPLYIANVA----HFDPKKAGDLSTLFDVGGILGGIVAGLVSDYTGGRASTCC 359
Query: 382 SFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNS 441
+ + A P LF Y G L + ++ G VNGPYALITTAVSADLGTH L+GNS
Sbjct: 360 AMLIIAAPMLFLYNKIGQNGLPTTVGMLLWCGALVNGPYALITTAVSADLGTHECLRGNS 419
Query: 442 RALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVVAEV 500
RAL+TVTAIIDGTGS+GAA+GPLL G IS T W VF ML+AA +++ LLL+RLV E+
Sbjct: 420 RALSTVTAIIDGTGSIGAAVGPLLAGLISPTGWNNVFYMLIAADVLACLLLSRLVYKEI 478
|
Danio rerio (taxid: 7955) |
| >sp|Q58CV5|SPX2_BOVIN Sugar phosphate exchanger 2 OS=Bos taurus GN=SLC37A2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/485 (49%), Positives = 314/485 (64%), Gaps = 35/485 (7%)
Query: 35 HQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSW 94
++A +L++TF YT YH +RK S+VKS L + +Q + L+
Sbjct: 11 YRAFILLITFLIYTCYHMSRKPISVVKSRLHHNCSEV-----------IQPVNSTHSLND 59
Query: 95 KLGDGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFT 154
WAPF+ S+ LLG +D AFL YA GMF SG G+RL LR +LT GM+ +GLFT
Sbjct: 60 TTWCNWAPFDKSNYKELLGAVDNAFLVAYAIGMFISGIFGERLPLRYYLTAGMLLSGLFT 119
Query: 155 SLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTS 214
SL+G+GY+ N+H +Y+++VQ+ GL Q+TGWP+VV+ VGNWFGK KRGLIMGIWN+HTS
Sbjct: 120 SLFGLGYFWNIHVLWYFVLVQIFNGLVQTTGWPAVVSCVGNWFGKGKRGLIMGIWNSHTS 179
Query: 215 IGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDT-----NEED 269
+GNI GSL+A + WG SFVVPG+I A +G+I F FL PE V N E+
Sbjct: 180 VGNILGSLLAGVWVDQQWGLSFVVPGVITAIMGIITFFFLIEYPEDVDCSPPQHHGNPEE 239
Query: 270 ESLSPKKIGEGVTQPLLRRETKIEE------------KAVGFIEAWKIPGVAPFALCLFF 317
P+ G P +E+ +E A+ F A +IPGV F+LCL F
Sbjct: 240 SQDQPEDPANG---PSCNKESSLESAVTCSKEASAQPSAISFFGALRIPGVVEFSLCLLF 296
Query: 318 AKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARA 377
AKLV+YTFLYWLP Y+S+ + +++ AG+LSTLFDVGG++GGILAG +SD ++ RA
Sbjct: 297 AKLVSYTFLYWLPLYISNVV----HFTAKEAGDLSTLFDVGGIIGGILAGLVSDYINGRA 352
Query: 378 ITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSL 437
T + A P +F Y G + ++I ++ I G VNGPYALITTAVSADLGTH SL
Sbjct: 353 TTCCVMLILAAPMMFLYNHVGQRGIGISIVMLLICGALVNGPYALITTAVSADLGTHKSL 412
Query: 438 KGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVV 497
KGN++AL+TVTAIIDGTGS+GAA+GPLL G IS T W VF ML+AA +++ LLL RLV
Sbjct: 413 KGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWNNVFYMLIAADVLACLLLCRLVY 472
Query: 498 AEVAA 502
E+ A
Sbjct: 473 KEILA 477
|
Bos taurus (taxid: 9913) |
| >sp|Q9WU81|SPX2_MOUSE Sugar phosphate exchanger 2 OS=Mus musculus GN=Slc37a2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 249/523 (47%), Positives = 329/523 (62%), Gaps = 41/523 (7%)
Query: 10 QRSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSP 69
RSS P G+ FL R+ F+ +L++TF Y YH +RK SIVKS L
Sbjct: 1 MRSSLAP-GVWFLRAFS-RDSWFR---GFILLLTFLIYACYHMSRKPISIVKSRLHQNCS 55
Query: 70 DTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYAGGMFF 129
+ + + + + +W W+PF+ D LLG +D AFL YA GMF
Sbjct: 56 EM--------VRPVNDTHDLNDTTWC---SWSPFDKDDYKELLGAVDNAFLVAYAIGMFI 104
Query: 130 SGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189
SG G+RL LR +L+ GMV +GLFTSL+G+GY+ N+H +Y++++Q+ GL Q+TGWPSV
Sbjct: 105 SGIFGERLPLRYYLSAGMVLSGLFTSLFGLGYFWNIHMLWYFVLIQICNGLVQTTGWPSV 164
Query: 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLI 249
V VGNWFGK KRG IMGIWN+HTS+GNI GSL+A + WG SF+VPG+I A +G+I
Sbjct: 165 VTCVGNWFGKGKRGFIMGIWNSHTSVGNILGSLIAGVWVNQHWGLSFIVPGIITAIMGVI 224
Query: 250 VFLFLPVNPESVGT-----DTNEEDESLSPKKIGEGVTQPLLRRETKI------------ 292
FLFL PE V + E E +P+ + V P RE+ +
Sbjct: 225 TFLFLIEYPEDVDCTPPRHHDDPEKEQDNPE---DPVNSPYSSRESNVDIAASSSKEQGP 281
Query: 293 EEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLS 352
E +A+ F+ A +IPGV F+LCL FAKLV+YTFLYWLP Y+ + A + S++ AG+LS
Sbjct: 282 EPEAISFLGALRIPGVIEFSLCLLFAKLVSYTFLYWLPLYIFNVA----HFSAKEAGDLS 337
Query: 353 TLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFIT 412
TLFDVGG++GGI+AG ISD ++RA T + A P +F Y G + +I ++ I
Sbjct: 338 TLFDVGGIIGGIMAGLISDYTNSRATTCCIMLILAAPMMFLYNYIGQNGITSSIVMLIIC 397
Query: 413 GMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472
G+ VNGPYALITTAVSADLGTH SLKGN++AL+TVTAIIDGTGS+GAA+GPLL G IS T
Sbjct: 398 GVLVNGPYALITTAVSADLGTHESLKGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPT 457
Query: 473 SWTAVFTMLMAAALISGLLLTRLVVAEVAA-KFVESRSQSGNQ 514
W VF ML++A +++ LLL RLV E+ A K RS Q
Sbjct: 458 GWNNVFYMLISADVLACLLLCRLVYKEILAWKTACGRSSGYKQ 500
|
Mus musculus (taxid: 10090) |
| >sp|Q8TED4|SPX2_HUMAN Sugar phosphate exchanger 2 OS=Homo sapiens GN=SLC37A2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 249/520 (47%), Positives = 329/520 (63%), Gaps = 34/520 (6%)
Query: 10 QRSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSP 69
RSS P G+ F R+ F+ ++L++TF Y YH +RK SIVKS L Q+
Sbjct: 1 MRSSLAP-GVWFFRAFS-RDSWFR---GLILLLTFLIYACYHMSRKPISIVKSRLH-QNC 54
Query: 70 DTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYAGGMFF 129
+K + ++ L+ + WAPF+ + LLG +D AFL YA GMF
Sbjct: 55 SEQIKPI----------NDTHSLNDTMWCSWAPFDKDNYKELLGGVDNAFLIAYAIGMFI 104
Query: 130 SGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189
SG G+RL LR +L+ GM+ +GLFTSL+G+GY+ N+H +Y++V+Q+ GL Q+TGWPSV
Sbjct: 105 SGVFGERLPLRYYLSAGMLLSGLFTSLFGLGYFWNIHELWYFVVIQVCNGLVQTTGWPSV 164
Query: 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLI 249
V VGNWFGK KRG IMGIWN+HTS+GNI GSL+A + WG SF+VPG+I A +G+I
Sbjct: 165 VTCVGNWFGKGKRGFIMGIWNSHTSVGNILGSLIAGIWVNGQWGLSFIVPGIITAVMGVI 224
Query: 250 VFLFLPVNPESVGT------------DTNEEDESLSPKKIGEGVTQPLLR--RETKIEEK 295
FLFL +PE V N ED SP I E + + + + E
Sbjct: 225 TFLFLIEHPEDVDCAPPQHHGEPAENQDNPEDPGNSPCSIRESGLETVAKCSKGPCEEPA 284
Query: 296 AVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLF 355
A+ F A +IPGV F+LCL FAKLV+YTFLYWLP Y+++ A + S++ AG+LSTLF
Sbjct: 285 AISFFGALRIPGVVEFSLCLLFAKLVSYTFLYWLPLYIANVA----HFSAKEAGDLSTLF 340
Query: 356 DVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMF 415
DVGG++GGI+AG +SD + RA T + A P +F Y G +A +I ++ I G
Sbjct: 341 DVGGIIGGIVAGLVSDYTNGRATTCCVMLILAAPMMFLYNYIGQDGIASSIVMLIICGGL 400
Query: 416 VNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWT 475
VNGPYALITTAVSADLGTH SLKGN++AL+TVTAIIDGTGS+GAA+GPLL G IS T W
Sbjct: 401 VNGPYALITTAVSADLGTHKSLKGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWN 460
Query: 476 AVFTMLMAAALISGLLLTRLVVAEVAAKFVESRSQSGNQS 515
VF ML++A +++ LLL RLV E+ A V SG +
Sbjct: 461 NVFYMLISADVLACLLLCRLVYKEILAWKVSLSRGSGYKE 500
|
Homo sapiens (taxid: 9606) |
| >sp|Q8AVC3|SPX2_XENLA Sugar phosphate exchanger 2 OS=Xenopus laevis GN=slc37a2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/529 (45%), Positives = 321/529 (60%), Gaps = 57/529 (10%)
Query: 11 RSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLD----- 65
RSS P IR ++ + + ++ ++++TF YT YH +RK SIVK L
Sbjct: 2 RSSLAP-AIRLMQSVSRDSC----YRGFIIVMTFLFYTCYHLSRKPISIVKGQLHRNCSA 56
Query: 66 -PQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYA 124
P P+ S W WAPF ++ LLG LD AFL YA
Sbjct: 57 LPNPPNISENDTTWC-------------------SWAPFENTNYKELLGSLDTAFLVSYA 97
Query: 125 GGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQST 184
GMFFSG G+RL LR +L+ GM+ +G+FTS G GY+ N+H+ +YY++ Q+L GL Q+T
Sbjct: 98 IGMFFSGIFGERLPLRYYLSGGMIISGIFTSFMGFGYYWNIHALWYYILFQILNGLAQTT 157
Query: 185 GWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIA 244
GWP+VV +GNWFGK KRG IMGIWN+HT++GNI GSL+A A ++ WG SF+VPG+IIA
Sbjct: 158 GWPAVVTCMGNWFGKGKRGFIMGIWNSHTAVGNILGSLIAGAFVSTAWGLSFIVPGIIIA 217
Query: 245 FVGLIVFLFLPVNPESVGTDTNEEDES----LSPKKIGEGVTQPLLRR-----------E 289
G+ F FL PE VG ++ E L + T + +
Sbjct: 218 AFGIFCFFFLVEYPEDVGCTPPQQPEEAKHDLENIPVSYNSTDTIFKSTESNADDSENAH 277
Query: 290 TKIEE-KAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMA 348
T++E +A+ FI A +IPGV F+LCL FAKLV+YTFLYWLP Y+++ A + A
Sbjct: 278 TEVEHPQAISFIGALRIPGVVEFSLCLLFAKLVSYTFLYWLPLYIANDA----QFDPKAA 333
Query: 349 GNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIAL 408
G+LSTLFDVGG++GGILAG ISD AIT + P LF Y +G ++ IA+
Sbjct: 334 GDLSTLFDVGGIIGGILAGGISDYTGKSAITCTIMLILTAPMLFIYNYFGQTGISTTIAM 393
Query: 409 MFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGY 468
+ I G+ VNGPY+LITTAVSADLGTH SL+GN++AL+TVTAIIDG+GS+GAA+GP L G
Sbjct: 394 LIICGILVNGPYSLITTAVSADLGTHESLQGNAKALSTVTAIIDGSGSIGAALGPSLAGV 453
Query: 469 ISATSWTAVFTMLMAAALISGLLLTRLVVAEVAAKFVESRSQSGNQSRS 517
+S+ W VF ML+AA + + LLL RLV E+ RS G + +S
Sbjct: 454 LSSRGWNYVFYMLIAADICACLLLARLVYKEI-------RSLCGGERKS 495
|
Xenopus laevis (taxid: 8355) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 524 | ||||||
| 255539773 | 563 | Glycerol-3-phosphate transporter, putati | 0.998 | 0.928 | 0.801 | 0.0 | |
| 224138500 | 523 | predicted protein [Populus trichocarpa] | 0.998 | 1.0 | 0.786 | 0.0 | |
| 224071521 | 522 | predicted protein [Populus trichocarpa] | 0.986 | 0.990 | 0.791 | 0.0 | |
| 225466109 | 516 | PREDICTED: putative glycerol-3-phosphate | 0.973 | 0.988 | 0.781 | 0.0 | |
| 147771686 | 520 | hypothetical protein VITISV_017332 [Viti | 0.973 | 0.980 | 0.781 | 0.0 | |
| 356543060 | 518 | PREDICTED: putative glycerol-3-phosphate | 0.986 | 0.998 | 0.784 | 0.0 | |
| 372266201 | 518 | putative glycerol-3-phosphate transporte | 0.965 | 0.976 | 0.793 | 0.0 | |
| 449451924 | 520 | PREDICTED: putative glycerol-3-phosphate | 0.990 | 0.998 | 0.746 | 0.0 | |
| 18408421 | 523 | phosphate starvation-induced protein [Ar | 0.965 | 0.967 | 0.732 | 0.0 | |
| 13272469 | 513 | putative protein [Arabidopsis thaliana] | 0.944 | 0.964 | 0.740 | 0.0 |
| >gi|255539773|ref|XP_002510951.1| Glycerol-3-phosphate transporter, putative [Ricinus communis] gi|223550066|gb|EEF51553.1| Glycerol-3-phosphate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/524 (80%), Positives = 472/524 (90%), Gaps = 1/524 (0%)
Query: 1 MGSLSEPAPQRSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIV 60
MGSLSEPA + + KP GI+FLECIK LS+K +Q IVLIVTFFAY SYHAARKTTSIV
Sbjct: 41 MGSLSEPAAEGNKNKPYGIQFLECIKKNRLSYKTYQVIVLIVTFFAYASYHAARKTTSIV 100
Query: 61 KSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFL 120
KSTLDPQS + LK PW+I+YL EP E R+ SW LGDGWAPFN SDGT+LLGELDLAFL
Sbjct: 101 KSTLDPQSSEMGLKLYPWKITYLSEPVERRRFSWTLGDGWAPFNASDGTSLLGELDLAFL 160
Query: 121 SIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGL 180
S+YA GM+FSGH+GDR++LRI LT+GMVGTG FTSL+G+GYW NVH+FYY+L+ QMLAGL
Sbjct: 161 SVYAIGMYFSGHIGDRMNLRILLTIGMVGTGFFTSLFGVGYWANVHNFYYFLIAQMLAGL 220
Query: 181 FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPG 240
FQSTGWPSVVAV+GNWFGK KRGLIMGIWNAHTSIGNI+GSL+A+A+L+YGWGWSFVVPG
Sbjct: 221 FQSTGWPSVVAVLGNWFGKRKRGLIMGIWNAHTSIGNISGSLIAAAMLSYGWGWSFVVPG 280
Query: 241 LIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFI 300
L+IAF+GL+V L LPV+PESVG + +E+D SPKK GE VT+PLL +++++E AVGFI
Sbjct: 281 LVIAFIGLVVLLLLPVDPESVGVERDEDDLH-SPKKAGEEVTEPLLESDSEVKETAVGFI 339
Query: 301 EAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGV 360
EAWKIPGVAPFALCLFFAKLVAYTFLYWLPFY+SHTA+DGKYLSS+ AGNLSTLFDVGGV
Sbjct: 340 EAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYISHTAIDGKYLSSDTAGNLSTLFDVGGV 399
Query: 361 LGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPY 420
+GGILAGHISDRL+ARAITAASF YCAIPALFFYRSYGH+SLA+NIALMFITGMFVNGPY
Sbjct: 400 IGGILAGHISDRLNARAITAASFTYCAIPALFFYRSYGHISLAMNIALMFITGMFVNGPY 459
Query: 421 ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTM 480
ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPL+TGYISA SW+AVFTM
Sbjct: 460 ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLITGYISAKSWSAVFTM 519
Query: 481 LMAAALISGLLLTRLVVAEVAAKFVESRSQSGNQSRSQAGVLDV 524
LM AALI+GLLLTRLVVAEVAAK ESRSQ+ SR+ A LDV
Sbjct: 520 LMGAALIAGLLLTRLVVAEVAAKISESRSQASVASRTTATTLDV 563
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224138500|ref|XP_002326618.1| predicted protein [Populus trichocarpa] gi|222833940|gb|EEE72417.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/524 (78%), Positives = 463/524 (88%), Gaps = 1/524 (0%)
Query: 1 MGSLSEPAPQRSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIV 60
MG E A + ++ P+GIRFLE IK + LS++ HQAIVLIVTF AYTSYHAARKTTSIV
Sbjct: 1 MGPFHEAAERNQNKPPIGIRFLESIKKKRLSYRTHQAIVLIVTFLAYTSYHAARKTTSIV 60
Query: 61 KSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFL 120
KSTLDP+S LK +PWRI+Y EP E + LSWKLGDGWAPFN SDGTALLGELDLAFL
Sbjct: 61 KSTLDPESSKVELKFVPWRITYSSEPVERKSLSWKLGDGWAPFNASDGTALLGELDLAFL 120
Query: 121 SIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGL 180
+IYA GM+FSGHLGDR++LRI LT+GMVGTG+FTSL+G+G+W NVH+FYYYL+VQMLAGL
Sbjct: 121 AIYALGMYFSGHLGDRMNLRILLTIGMVGTGIFTSLFGVGFWANVHNFYYYLIVQMLAGL 180
Query: 181 FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPG 240
FQSTGWPSVVAVVGNWFGK KRGLIMGIWNAHTS+GNI+GSL+A+A+L+YGWGWSFV+PG
Sbjct: 181 FQSTGWPSVVAVVGNWFGKKKRGLIMGIWNAHTSVGNISGSLIAAAMLSYGWGWSFVLPG 240
Query: 241 LIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFI 300
L+IAF GL+VF LPV+PE+VG D +EDE SP K GE VT+PLL ++ ++++AVGFI
Sbjct: 241 LLIAFAGLLVFALLPVSPEAVGAD-KDEDELDSPNKAGEEVTEPLLVSDSDVKQEAVGFI 299
Query: 301 EAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGV 360
EAWKIPGVAPFALCLFFAKLVAYTFLYWLPFY+S TA+DGKYLS AGNLST FDVGGV
Sbjct: 300 EAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYISQTAIDGKYLSDGTAGNLSTFFDVGGV 359
Query: 361 LGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPY 420
+GGILAGHISDRLDARAITAASFMYC+IPALFFYRSYGHLSL LNIA M +TGM VNGPY
Sbjct: 360 VGGILAGHISDRLDARAITAASFMYCSIPALFFYRSYGHLSLGLNIAFMLLTGMLVNGPY 419
Query: 421 ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTM 480
ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISA SW+AVFTM
Sbjct: 420 ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAKSWSAVFTM 479
Query: 481 LMAAALISGLLLTRLVVAEVAAKFVESRSQSGNQSRSQAGVLDV 524
LMAAAL++GLLLTRLVVAEVAAK ESRSQ S++QA DV
Sbjct: 480 LMAAALVAGLLLTRLVVAEVAAKIAESRSQGSPASKAQAAAFDV 523
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224071521|ref|XP_002303500.1| predicted protein [Populus trichocarpa] gi|222840932|gb|EEE78479.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/519 (79%), Positives = 466/519 (89%), Gaps = 2/519 (0%)
Query: 6 EPAPQRSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLD 65
+P + + P+GIRFLEC+K R LS+ HQAIVLIVTF AY SYHAARKTTSIVKSTLD
Sbjct: 6 DPVERNQIKPPIGIRFLECVKKRRLSYGTHQAIVLIVTFLAYASYHAARKTTSIVKSTLD 65
Query: 66 PQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYAG 125
PQS + L+S+PWRI+Y EP ++ SWKLG+GWAPF+ SDGTALLGELDLAFL+IYA
Sbjct: 66 PQSSEVGLRSVPWRITYSNEPVARKRSSWKLGEGWAPFDASDGTALLGELDLAFLAIYAI 125
Query: 126 GMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTG 185
GMFFSGHLGDR++LRIFLT+GMVGTG+FTSL+G+G+W NVH+FYYYL+VQMLAGLFQSTG
Sbjct: 126 GMFFSGHLGDRMNLRIFLTIGMVGTGIFTSLFGVGFWANVHNFYYYLIVQMLAGLFQSTG 185
Query: 186 WPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAF 245
WPSVVAVVG WFGK KRGLIMGIWNAHTS+GNI+GSL+A+A+L+YGWGWSFV+PGL+IAF
Sbjct: 186 WPSVVAVVGKWFGKRKRGLIMGIWNAHTSVGNISGSLIAAAMLSYGWGWSFVLPGLVIAF 245
Query: 246 VGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKI 305
VGL+VF+ LPV+PE+VG D +EDE SP K GEGVT+PLL + ++++AVGFIEAWKI
Sbjct: 246 VGLLVFVLLPVSPEAVGAD-KDEDELDSPNKAGEGVTEPLLASDPDVKQEAVGFIEAWKI 304
Query: 306 PGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGIL 365
PGVAPFALCLFF+KLVAYTFLYWLPFY+S TA+DGKYLS +GNLSTLFDVGGV+GGIL
Sbjct: 305 PGVAPFALCLFFSKLVAYTFLYWLPFYISQTAIDGKYLSDGSSGNLSTLFDVGGVVGGIL 364
Query: 366 AGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITT 425
AGHISDRLDARAITAASFMYCAIP+LFFYRSYGHLSL LNIALMFITGMFVNGPYALITT
Sbjct: 365 AGHISDRLDARAITAASFMYCAIPSLFFYRSYGHLSLGLNIALMFITGMFVNGPYALITT 424
Query: 426 AVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAA 485
AVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYIS+ SW AVF MLMAAA
Sbjct: 425 AVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISSKSWNAVFAMLMAAA 484
Query: 486 LISGLLLTRLVVAEVAAKFVESRSQSGNQSRSQAGVLDV 524
L++GLLLTRL+VAEVAAK ESRSQ G+ SR+ A LDV
Sbjct: 485 LVAGLLLTRLIVAEVAAKIAESRSQ-GSTSRAPAAALDV 522
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466109|ref|XP_002266677.1| PREDICTED: putative glycerol-3-phosphate transporter 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/517 (78%), Positives = 456/517 (88%), Gaps = 7/517 (1%)
Query: 1 MGSLSEPAPQRSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIV 60
MGS+ EP P + RKPLGIRFLE IK + LS+K +QAIVLIVTFFAY SYHA RKTTS+V
Sbjct: 1 MGSMLEPLPATNYRKPLGIRFLEHIKKKTLSYKAYQAIVLIVTFFAYASYHATRKTTSVV 60
Query: 61 KSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFL 120
KS LDP+S D SLK PW L P +SW LG GWAPF+G+DGTALLG++D+AFL
Sbjct: 61 KSALDPES-DVSLKFSPWWRKNLGRP-----VSWALGSGWAPFDGADGTALLGDIDVAFL 114
Query: 121 SIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGL 180
+YA GM+FSGHLGDRL+LRIFLTVGMVGTGLFTSLYG+GYW N+H FYY+L+ QM AGL
Sbjct: 115 GVYAIGMYFSGHLGDRLNLRIFLTVGMVGTGLFTSLYGVGYWANIHIFYYFLIDQMFAGL 174
Query: 181 FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPG 240
FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTS+GNI GS++AS LL YGWGWSFVVPG
Sbjct: 175 FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSVGNIAGSVIASVLLAYGWGWSFVVPG 234
Query: 241 LIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFI 300
L+IAFVGL+VFL LPV+PESVG EED+ SP+K GE VT+PLL+ +T++++KA+GFI
Sbjct: 235 LMIAFVGLVVFLLLPVSPESVGA-VAEEDQVHSPRKNGEEVTEPLLQSDTEVKKKAIGFI 293
Query: 301 EAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGV 360
EAWKIPGVAPFALCLFFAKLVAYTFLYWLPFY+SHT +DGKYLSSE AGNLST+FDVGGV
Sbjct: 294 EAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYISHTDIDGKYLSSEAAGNLSTVFDVGGV 353
Query: 361 LGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPY 420
+GGILAGHISDRL ARAITAASFMYCAIPALFFYRSYG +S+ +N+ LMFITG+FVNGPY
Sbjct: 354 VGGILAGHISDRLGARAITAASFMYCAIPALFFYRSYGSISVPVNVVLMFITGLFVNGPY 413
Query: 421 ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTM 480
ALITTAVSADLGTHSSL+G+SRALATVTAIIDGTGSVGAA+GPLLTGYISA SW+AVFTM
Sbjct: 414 ALITTAVSADLGTHSSLEGDSRALATVTAIIDGTGSVGAALGPLLTGYISAKSWSAVFTM 473
Query: 481 LMAAALISGLLLTRLVVAEVAAKFVESRSQSGNQSRS 517
LMA+AL++GLLLTRLVVAEVAAK ESR Q G SRS
Sbjct: 474 LMASALVAGLLLTRLVVAEVAAKIAESRRQGGPTSRS 510
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771686|emb|CAN78171.1| hypothetical protein VITISV_017332 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/517 (78%), Positives = 456/517 (88%), Gaps = 7/517 (1%)
Query: 1 MGSLSEPAPQRSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIV 60
MGS+ EP P + RKPLGIRFLE IK + LS+K +QAIVLIVTFFAY SYHA RKTTS+V
Sbjct: 1 MGSMLEPLPATNYRKPLGIRFLEHIKKKTLSYKAYQAIVLIVTFFAYASYHATRKTTSVV 60
Query: 61 KSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFL 120
KS LDP+S D SLK PW L P +SW LG GWAPF+G+DGTALLG++D+AFL
Sbjct: 61 KSALDPES-DVSLKFSPWWRKNLGRP-----VSWALGSGWAPFDGADGTALLGDIDVAFL 114
Query: 121 SIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGL 180
+YA GM+FSGHLGDRL+LRIFLTVGMVGTGLFTSLYG+GYW N+H FYY+L+ QM AGL
Sbjct: 115 GVYAIGMYFSGHLGDRLNLRIFLTVGMVGTGLFTSLYGVGYWANIHIFYYFLIDQMFAGL 174
Query: 181 FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPG 240
FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTS+GNI GS++AS LL YGWGWSFVVPG
Sbjct: 175 FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSVGNIAGSVIASVLLAYGWGWSFVVPG 234
Query: 241 LIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFI 300
L+IAFVGL+VFL LPV+PESVG EED+ SP+K GE VT+PLL+ +T++++KA+GFI
Sbjct: 235 LMIAFVGLVVFLLLPVSPESVGA-VAEEDQVHSPRKNGEEVTEPLLQSDTEVKKKAIGFI 293
Query: 301 EAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGV 360
EAWKIPGVAPFALCLFFAKLVAYTFLYWLPFY+SHT +DGKYLSSE AGNLST+FDVGGV
Sbjct: 294 EAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYISHTDIDGKYLSSEAAGNLSTVFDVGGV 353
Query: 361 LGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPY 420
+GGILAGHISDRL ARAITAASFMYCAIPALFFYRSYG +S+ +N+ LMFITG+FVNGPY
Sbjct: 354 VGGILAGHISDRLGARAITAASFMYCAIPALFFYRSYGSISVPVNVVLMFITGLFVNGPY 413
Query: 421 ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTM 480
ALITTAVSADLGTHSSL+G+SRALATVTAIIDGTGSVGAA+GPLLTGYISA SW+AVFTM
Sbjct: 414 ALITTAVSADLGTHSSLEGDSRALATVTAIIDGTGSVGAALGPLLTGYISAKSWSAVFTM 473
Query: 481 LMAAALISGLLLTRLVVAEVAAKFVESRSQSGNQSRS 517
LMA+AL++GLLLTRLVVAEVAAK ESR Q G SRS
Sbjct: 474 LMASALVAGLLLTRLVVAEVAAKIAESRRQGGPTSRS 510
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543060|ref|XP_003539981.1| PREDICTED: putative glycerol-3-phosphate transporter 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/525 (78%), Positives = 451/525 (85%), Gaps = 8/525 (1%)
Query: 1 MGSLSEPAPQRSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIV 60
MGS E QRS K +G R L+ + G LSFK HQAIVLIVTFFAY SYHA RKTTSIV
Sbjct: 1 MGSTPEVLAQRSCGKLIGTRLLQYLNGGPLSFKTHQAIVLIVTFFAYASYHATRKTTSIV 60
Query: 61 KSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFL 120
KS LDPQS T L P+R + E S++LS LGDGWAPFNGSDGT+LLGELD+AFL
Sbjct: 61 KSVLDPQSAATGLTFFPFRPTNFTESNGSKRLSSNLGDGWAPFNGSDGTSLLGELDVAFL 120
Query: 121 SIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGL 180
++YA GM+FSGH GDR +LRIFLTVGM+GTGLFTSL+G+GYWGN+H+FYYYLVVQM+AGL
Sbjct: 121 AVYAFGMYFSGHFGDRCNLRIFLTVGMLGTGLFTSLFGVGYWGNIHNFYYYLVVQMIAGL 180
Query: 181 FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPG 240
FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNI GSL+ASA+L+YGWGWSFVVPG
Sbjct: 181 FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNIAGSLIASAMLSYGWGWSFVVPG 240
Query: 241 LIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEK-AVGF 299
LI AF+GL VFL LPV PESVG EEDE P K GE +PLLR+ET +EEK AVGF
Sbjct: 241 LITAFIGLAVFLILPVTPESVG--AREEDEFSGPIKSGEEAAEPLLRQETPVEEKEAVGF 298
Query: 300 IEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGG 359
IEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTA+DGKYLSSE +G LSTLFDVGG
Sbjct: 299 IEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAIDGKYLSSETSGTLSTLFDVGG 358
Query: 360 VLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGP 419
VLGGILAGHISD L+ARAITAASFMYCAIPALFFYRSYGH+SL +N ALMF+TGMFVNGP
Sbjct: 359 VLGGILAGHISDHLEARAITAASFMYCAIPALFFYRSYGHVSLIVNGALMFVTGMFVNGP 418
Query: 420 YALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFT 479
YALITTAVSADLGTH SLKGNSRALATVTAIIDGTGS+GAA+GPLLTGYISA SW+AVFT
Sbjct: 419 YALITTAVSADLGTHKSLKGNSRALATVTAIIDGTGSIGAAVGPLLTGYISAKSWSAVFT 478
Query: 480 MLMAAALISGLLLTRLVVAEVAAKFVESRSQSGNQSRSQAGVLDV 524
MLMAAALI+GLLLTRLVV+EVA K ESRS R+Q L+V
Sbjct: 479 MLMAAALIAGLLLTRLVVSEVATKIEESRSN-----RAQDCSLNV 518
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|372266201|ref|NP_001243213.1| putative glycerol-3-phosphate transporter 1-like [Glycine max] gi|190683711|gb|ACE82174.1| glycerol-3-phosphate transporter [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/509 (79%), Positives = 443/509 (87%), Gaps = 3/509 (0%)
Query: 1 MGSLSEPAPQRSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIV 60
MGS E QRS K +G RFL+ + G LSFK HQAIVLIVTFFAY SYHA RKTTSIV
Sbjct: 1 MGSAPEVLAQRSCGKLIGTRFLQYLNGGPLSFKTHQAIVLIVTFFAYASYHATRKTTSIV 60
Query: 61 KSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFL 120
KS LDPQS L P+R + E S+ LS LGDGWAPFNGSDGT+LLG+LD+AFL
Sbjct: 61 KSVLDPQSSAIGLTFFPFRPTNFTESNGSKTLSSNLGDGWAPFNGSDGTSLLGQLDVAFL 120
Query: 121 SIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGL 180
++YA GM+FSGH GDR +LRIFLTVGM+GTGLFTSL+G+GYWGN+H+FYYYL+VQM+AGL
Sbjct: 121 AVYAFGMYFSGHFGDRCNLRIFLTVGMIGTGLFTSLFGVGYWGNIHNFYYYLIVQMIAGL 180
Query: 181 FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPG 240
FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNI GSL+ASA+L+YGWGWSFVVPG
Sbjct: 181 FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNIAGSLIASAMLSYGWGWSFVVPG 240
Query: 241 LIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEK-AVGF 299
L+ AFVGL+VFL LPV PESVG EEDE P K GE +PLLR+ET +EEK AVGF
Sbjct: 241 LMTAFVGLVVFLILPVTPESVG--AREEDEFSCPIKSGEEAAEPLLRQETPVEEKEAVGF 298
Query: 300 IEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGG 359
IEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTA+DGKYLSS +G LSTLFDVGG
Sbjct: 299 IEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAIDGKYLSSGTSGTLSTLFDVGG 358
Query: 360 VLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGP 419
VLGGILAGHISD L+ARAITAASFMYCAIPALFFYRSYGH+SL +N ALMF+TGMFVNGP
Sbjct: 359 VLGGILAGHISDHLEARAITAASFMYCAIPALFFYRSYGHVSLIVNGALMFVTGMFVNGP 418
Query: 420 YALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFT 479
YALITTAVSADLGTH SLKGNSRALATVTAIIDGTGS+GAA+GPLLTGYISA SW+AVFT
Sbjct: 419 YALITTAVSADLGTHKSLKGNSRALATVTAIIDGTGSIGAAVGPLLTGYISAKSWSAVFT 478
Query: 480 MLMAAALISGLLLTRLVVAEVAAKFVESR 508
MLMAAALI+GLLLTRLVV+EVA K ESR
Sbjct: 479 MLMAAALIAGLLLTRLVVSEVATKIEESR 507
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451924|ref|XP_004143710.1| PREDICTED: putative glycerol-3-phosphate transporter 1-like [Cucumis sativus] gi|449523379|ref|XP_004168701.1| PREDICTED: putative glycerol-3-phosphate transporter 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/525 (74%), Positives = 448/525 (85%), Gaps = 6/525 (1%)
Query: 1 MGSLSEPAPQRSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIV 60
MGSLSE + ++RKP G+RF E ++ + LS+K HQAIVL+VTF AY +YHA+RKTTSI+
Sbjct: 1 MGSLSESECEVNNRKPYGLRFFEWMRKKPLSYKAHQAIVLLVTFLAYANYHASRKTTSII 60
Query: 61 KSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDG-WAPFNGSDGTALLGELDLAF 119
KS LDP SPD LK WR S P E W L G WAPF+ +GT+LLGELDLAF
Sbjct: 61 KSALDPLSPDVGLKLNLWRTSRSSTPVEKTN-QWSLSSGGWAPFDAPEGTSLLGELDLAF 119
Query: 120 LSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAG 179
L IYAGGM+FSG LGDR DLRIFLT+GM+GTGLFT L+G+GYW N+H F YYL+VQMLAG
Sbjct: 120 LGIYAGGMYFSGQLGDRTDLRIFLTLGMLGTGLFTLLFGLGYWANIHIFSYYLIVQMLAG 179
Query: 180 LFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVP 239
LFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTS+GNI+GSLVASALL+YGWGWS VP
Sbjct: 180 LFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSVGNISGSLVASALLSYGWGWSMAVP 239
Query: 240 GLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGF 299
GLIIAF GL+VFLFLPVNPESVG D +D S PKK GEG+T+PLL+ E++I EKAVGF
Sbjct: 240 GLIIAFSGLVVFLFLPVNPESVGIDKVGDDFS-CPKKAGEGITEPLLKSESEI-EKAVGF 297
Query: 300 IEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGG 359
+EAW+IPGVAPFA CLFFAKLVAYTFLYWLPFY+SHT +DGKYLSS AGNLSTLFD+GG
Sbjct: 298 MEAWRIPGVAPFAFCLFFAKLVAYTFLYWLPFYISHTVIDGKYLSSTTAGNLSTLFDIGG 357
Query: 360 VLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGP 419
V+GGILAGHISDRL ARAITAASFMYCAIPAL+ YR+YGH+S+ +N+ALMFITGMFVNGP
Sbjct: 358 VVGGILAGHISDRLGARAITAASFMYCAIPALYCYRNYGHVSITMNVALMFITGMFVNGP 417
Query: 420 YALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFT 479
YALITTAVSADLGTHSSL+G+SRALATVTAIIDGTGSVGAAIGPLLTGY+SA SW++VF
Sbjct: 418 YALITTAVSADLGTHSSLQGSSRALATVTAIIDGTGSVGAAIGPLLTGYLSAKSWSSVFV 477
Query: 480 MLMAAALISGLLLTRLVVAEVAAKFVESRSQSGNQSRSQAGVLDV 524
MLM +ALI+GL LTRLV+AEV AK ES S+ + SQ+ VL+V
Sbjct: 478 MLMVSALIAGLFLTRLVIAEVTAKIEESASR--GRITSQSPVLEV 520
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18408421|ref|NP_566891.1| phosphate starvation-induced protein [Arabidopsis thaliana] gi|75268167|sp|Q9C5L3.1|GLPT1_ARATH RecName: Full=Putative glycerol-3-phosphate transporter 1; Short=G-3-P transporter 1; AltName: Full=Glycerol-3-phosphate permease 1; Short=AtG3Pp1; Short=G-3-P permease 1; AltName: Full=Protein PHOSPHATE STARVATION-INDUCED GENE 3; Short=AtPS3 gi|13430516|gb|AAK25880.1|AF360170_1 unknown protein [Arabidopsis thaliana] gi|332644758|gb|AEE78279.1| phosphate starvation-induced protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/520 (73%), Positives = 441/520 (84%), Gaps = 14/520 (2%)
Query: 1 MGSLSEPAPQRSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIV 60
MGSL + P+ +KP+GIRFLE IKG LS+ +QAIVLIVTF AY SYHAARKTTSIV
Sbjct: 1 MGSLMQSEPEME-KKPIGIRFLERIKGSKLSYSAYQAIVLIVTFLAYASYHAARKTTSIV 59
Query: 61 KSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFL 120
KS LDPQSPDT L SL R + S S K GWAPFNG DGT LLGE+D+AFL
Sbjct: 60 KSALDPQSPDTGLNSLLLRFT-------SFGSSVKEEGGWAPFNGPDGTVLLGEIDVAFL 112
Query: 121 SIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGL 180
++YA GM+F+GHLGDR++LRIFLTVGM+GTGLFTSL+G+GYWGN+HSFYY+L++QMLAGL
Sbjct: 113 AVYAFGMYFAGHLGDRMNLRIFLTVGMIGTGLFTSLFGVGYWGNIHSFYYFLIMQMLAGL 172
Query: 181 FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPG 240
FQS+GWPSVVAVVGNWF K KRGLIMGIWNAHTS+GNITGSL+A+A+L YGWGWSFVVPG
Sbjct: 173 FQSSGWPSVVAVVGNWFNKKKRGLIMGIWNAHTSVGNITGSLIAAAMLRYGWGWSFVVPG 232
Query: 241 LIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLL----RRETKIEEKA 296
+II +GL+ + FLPV+PE+VG + +E +S S +KIG V +PLL ET +++A
Sbjct: 233 VIIVVIGLVNYAFLPVSPENVGAERDEVLDS-SSEKIGNSVNEPLLLSSSDSETDDKKRA 291
Query: 297 VGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFD 356
VGFIEAW+IPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTA++G+YLS E AGNLST+FD
Sbjct: 292 VGFIEAWRIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAIEGEYLSDETAGNLSTMFD 351
Query: 357 VGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFV 416
VGGV+GGI+AG+ISDR+ ARAITAASFMYC+IPALFFYRSYGH+SL N +LMF+TGM V
Sbjct: 352 VGGVVGGIMAGYISDRIGARAITAASFMYCSIPALFFYRSYGHVSLLANASLMFLTGMLV 411
Query: 417 NGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWT 475
NGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAA+GPLLTGYIS+ SWT
Sbjct: 412 NGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAVGPLLTGYISSRGSWT 471
Query: 476 AVFTMLMAAALISGLLLTRLVVAEVAAKFVESRSQSGNQS 515
AVFTMLM AA ++GLLLTRLV+AEVA K ESR +S
Sbjct: 472 AVFTMLMGAAFVAGLLLTRLVMAEVAEKIAESRPSEECRS 511
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13272469|gb|AAK17173.1|AF325105_1 putative protein [Arabidopsis thaliana] gi|5541709|emb|CAB51214.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/508 (74%), Positives = 434/508 (85%), Gaps = 13/508 (2%)
Query: 13 SRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTS 72
+KP+GIRFLE IKG LS+ +QAIVLIVTF AY SYHAARKTTSIVKS LDPQSPDT
Sbjct: 2 EKKPIGIRFLERIKGSKLSYSAYQAIVLIVTFLAYASYHAARKTTSIVKSALDPQSPDTG 61
Query: 73 LKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGH 132
L SL R + S S K GWAPFNG DGT LLGE+D+AFL++YA GM+F+GH
Sbjct: 62 LNSLLLRFT-------SFGSSVKEEGGWAPFNGPDGTVLLGEIDVAFLAVYAFGMYFAGH 114
Query: 133 LGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAV 192
LGDR++LRIFLTVGM+GTGLFTSL+G+GYWGN+HSFYY+L++QMLAGLFQS+GWPSVVAV
Sbjct: 115 LGDRMNLRIFLTVGMIGTGLFTSLFGVGYWGNIHSFYYFLIMQMLAGLFQSSGWPSVVAV 174
Query: 193 VGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFL 252
VGNWF K KRGLIMGIWNAHTS+GNITGSL+A+A+L YGWGWSFVVPG+II +GL+ +
Sbjct: 175 VGNWFNKKKRGLIMGIWNAHTSVGNITGSLIAAAMLRYGWGWSFVVPGVIIVVIGLVNYA 234
Query: 253 FLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLL----RRETKIEEKAVGFIEAWKIPGV 308
FLPV+PE+VG + +E +S S +KIG V +PLL ET +++AVGFIEAW+IPGV
Sbjct: 235 FLPVSPENVGAERDEVLDS-SSEKIGNSVNEPLLLSSSDSETDDKKRAVGFIEAWRIPGV 293
Query: 309 APFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGH 368
APFALCLFFAKLVAYTFLYWLPFYVSHTA++G+YLS E AGNLST+FDVGGV+GGI+AG+
Sbjct: 294 APFALCLFFAKLVAYTFLYWLPFYVSHTAIEGEYLSDETAGNLSTMFDVGGVVGGIMAGY 353
Query: 369 ISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVS 428
ISDR+ ARAITAASFMYC+IPALFFYRSYGH+SL N +LMF+TGM VNGPYALITTAVS
Sbjct: 354 ISDRIGARAITAASFMYCSIPALFFYRSYGHVSLLANASLMFLTGMLVNGPYALITTAVS 413
Query: 429 ADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALI 487
ADLGTHSSLKGNSRALATVTAIIDGTGSVGAA+GPLLTGYIS+ SWTAVFTMLM AA +
Sbjct: 414 ADLGTHSSLKGNSRALATVTAIIDGTGSVGAAVGPLLTGYISSRGSWTAVFTMLMGAAFV 473
Query: 488 SGLLLTRLVVAEVAAKFVESRSQSGNQS 515
+GLLLTRLV+AEVA K ESR +S
Sbjct: 474 AGLLLTRLVMAEVAEKIAESRPSEECRS 501
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 524 | ||||||
| TAIR|locus:2099585 | 523 | G3Pp1 "AT3G47420" [Arabidopsis | 0.948 | 0.950 | 0.739 | 5e-202 | |
| TAIR|locus:2122664 | 504 | G3Pp2 "AT4G25220" [Arabidopsis | 0.769 | 0.799 | 0.692 | 1.6e-171 | |
| TAIR|locus:2028125 | 510 | G3Pp3 "AT1G30560" [Arabidopsis | 0.765 | 0.786 | 0.683 | 3.4e-167 | |
| TAIR|locus:2129176 | 544 | G3Pp4 "AT4G17550" [Arabidopsis | 0.446 | 0.430 | 0.645 | 8e-155 | |
| TAIR|locus:2056457 | 493 | G3Pp5 "AT2G13100" [Arabidopsis | 0.853 | 0.906 | 0.561 | 6.8e-143 | |
| UNIPROTKB|E1C5M0 | 497 | SLC37A2 "Uncharacterized prote | 0.858 | 0.905 | 0.527 | 9.5e-121 | |
| UNIPROTKB|F1Q362 | 497 | SLC37A2 "Uncharacterized prote | 0.895 | 0.943 | 0.498 | 1.1e-119 | |
| UNIPROTKB|F1Q2V8 | 508 | SLC37A2 "Uncharacterized prote | 0.875 | 0.903 | 0.495 | 1.8e-117 | |
| RGD|1564160 | 501 | Slc37a2 "solute carrier family | 0.900 | 0.942 | 0.484 | 1.8e-117 | |
| UNIPROTKB|Q58CV5 | 491 | SLC37A2 "Sugar phosphate excha | 0.864 | 0.922 | 0.493 | 1.3e-116 |
| TAIR|locus:2099585 G3Pp1 "AT3G47420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1955 (693.3 bits), Expect = 5.0e-202, P = 5.0e-202
Identities = 378/511 (73%), Positives = 437/511 (85%)
Query: 1 MGSLSEPAPQRSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIV 60
MGSL + P+ +KP+GIRFLE IKG LS+ +QAIVLIVTF AY SYHAARKTTSIV
Sbjct: 1 MGSLMQSEPEME-KKPIGIRFLERIKGSKLSYSAYQAIVLIVTFLAYASYHAARKTTSIV 59
Query: 61 KSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFL 120
KS LDPQSPDT L SL R + S S K GWAPFNG DGT LLGE+D+AFL
Sbjct: 60 KSALDPQSPDTGLNSLLLRFT-------SFGSSVKEEGGWAPFNGPDGTVLLGEIDVAFL 112
Query: 121 SIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGL 180
++YA GM+F+GHLGDR++LRIFLTVGM+GTGLFTSL+G+GYWGN+HSFYY+L++QMLAGL
Sbjct: 113 AVYAFGMYFAGHLGDRMNLRIFLTVGMIGTGLFTSLFGVGYWGNIHSFYYFLIMQMLAGL 172
Query: 181 FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPG 240
FQS+GWPSVVAVVGNWF K KRGLIMGIWNAHTS+GNITGSL+A+A+L YGWGWSFVVPG
Sbjct: 173 FQSSGWPSVVAVVGNWFNKKKRGLIMGIWNAHTSVGNITGSLIAAAMLRYGWGWSFVVPG 232
Query: 241 LIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRR----ETKIEEKA 296
+II +GL+ + FLPV+PE+VG + +E +S S +KIG V +PLL ET +++A
Sbjct: 233 VIIVVIGLVNYAFLPVSPENVGAERDEVLDS-SSEKIGNSVNEPLLLSSSDSETDDKKRA 291
Query: 297 VGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFD 356
VGFIEAW+IPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTA++G+YLS E AGNLST+FD
Sbjct: 292 VGFIEAWRIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAIEGEYLSDETAGNLSTMFD 351
Query: 357 VGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFV 416
VGGV+GGI+AG+ISDR+ ARAITAASFMYC+IPALFFYRSYGH+SL N +LMF+TGM V
Sbjct: 352 VGGVVGGIMAGYISDRIGARAITAASFMYCSIPALFFYRSYGHVSLLANASLMFLTGMLV 411
Query: 417 NGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWT 475
NGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAA+GPLLTGYIS+ SWT
Sbjct: 412 NGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAVGPLLTGYISSRGSWT 471
Query: 476 AVFTMLMAAALISGLLLTRLVVAEVAAKFVE 506
AVFTMLM AA ++GLLLTRLV+AEVA K E
Sbjct: 472 AVFTMLMGAAFVAGLLLTRLVMAEVAEKIAE 502
|
|
| TAIR|locus:2122664 G3Pp2 "AT4G25220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1544 (548.6 bits), Expect = 1.6e-171, Sum P(2) = 1.6e-171
Identities = 281/406 (69%), Positives = 344/406 (84%)
Query: 99 GWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYG 158
GWAPF+G DGTALLG++DLAFLS+YA GMF +GHLGDRLDLR FLT+GM+GTGLFT+L+G
Sbjct: 73 GWAPFDGPDGTALLGQIDLAFLSVYAVGMFVAGHLGDRLDLRTFLTIGMIGTGLFTALFG 132
Query: 159 IGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNI 218
+ +W N HSFYY+L VQ++AGLFQS GWP +VAV+GNWF K +RG+IMG+W+AHTS+GNI
Sbjct: 133 VAFWANFHSFYYFLAVQVMAGLFQSIGWPCIVAVLGNWFDKKRRGMIMGVWSAHTSLGNI 192
Query: 219 TGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIG 278
GSL+AS LL YGWGWSF+ P ++ F+G++V+LFLPVNP +V + + E S ++G
Sbjct: 193 AGSLIASGLLRYGWGWSFLGPAFLMTFLGIVVYLFLPVNPPTVEAE-RDGTEIDSTMRLG 251
Query: 279 EGVTQPLL--RRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHT 336
+ +T+ LL R T + KAVGF+ AWKIPGVAPFA CLFF KLV+YTFLYWLPFYVSH
Sbjct: 252 DTITESLLESRMSTGFDRKAVGFMAAWKIPGVAPFAFCLFFTKLVSYTFLYWLPFYVSHN 311
Query: 337 AVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRS 396
+ G+YLS E +GNLST+FDVGGV+GG+LAG+ISD+L+ RAITAA FMY AIPALF YR
Sbjct: 312 MIGGEYLSEETSGNLSTIFDVGGVVGGVLAGYISDQLNGRAITAAGFMYLAIPALFLYRV 371
Query: 397 YGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGS 456
+GH+SL +N+ LMF +G+F+ GP+ALITTAVSADLGTH SLKGN+RALATV+AIIDGTGS
Sbjct: 372 FGHISLTINVILMFTSGVFIIGPFALITTAVSADLGTHKSLKGNARALATVSAIIDGTGS 431
Query: 457 VGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVVAEVAA 502
VGAAIGP+LTGYISA SW AVF MLM AALISGLLLT+L++AEV A
Sbjct: 432 VGAAIGPVLTGYISAISWDAVFYMLMTAALISGLLLTKLIIAEVKA 477
|
|
| TAIR|locus:2028125 G3Pp3 "AT1G30560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1511 (537.0 bits), Expect = 3.4e-167, Sum P(2) = 3.4e-167
Identities = 276/404 (68%), Positives = 336/404 (83%)
Query: 99 GWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYG 158
GWAPF+G DGTALLG++DLAFLS+YA GMF +GHLGDRLDLR FLT+GMVGTG+ T+L+G
Sbjct: 80 GWAPFDGPDGTALLGQIDLAFLSVYAVGMFVAGHLGDRLDLRTFLTIGMVGTGVCTALFG 139
Query: 159 IGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNI 218
+ +W N+H+FYY+L +Q LAG FQS GWP VVAV+GNWF K +RG+IMG+W+AHTS+GNI
Sbjct: 140 VAFWANIHAFYYFLAIQTLAGWFQSIGWPCVVAVLGNWFDKKRRGVIMGVWSAHTSLGNI 199
Query: 219 TGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIG 278
G+L+A+ LL +GWGWSFV P L+I F+G++V+LFLPVNP +V + + E S ++G
Sbjct: 200 IGTLIATGLLKFGWGWSFVGPALLITFLGIVVYLFLPVNPHAVEAE-RDGSEVDSTMRLG 258
Query: 279 EGVTQPLL--RRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHT 336
+ +T+ L R T + +AVGF+ AWKIPGVAPFA CLFF KLV+YTFLYWLPFYVS T
Sbjct: 259 DTITESFLSSRTSTGFDRRAVGFLAAWKIPGVAPFAFCLFFTKLVSYTFLYWLPFYVSQT 318
Query: 337 AVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRS 396
+ G+ LS E +GNLSTLFDVGGV+GGILAG+ SD+LD RAITA F+Y IPALF YR
Sbjct: 319 EIGGEQLSQETSGNLSTLFDVGGVVGGILAGYFSDQLDGRAITAGGFIYLTIPALFLYRI 378
Query: 397 YGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGS 456
YGH+S+ +NI LMF+ G+FVNGPYALITTAV+ADLGTH SLKGN+RALATVTAIIDGTGS
Sbjct: 379 YGHVSMTINIILMFVAGLFVNGPYALITTAVAADLGTHKSLKGNARALATVTAIIDGTGS 438
Query: 457 VGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVVAEV 500
VGAAIGP+LTGYI+A SW AVF MLM AALISGLLLT L++ EV
Sbjct: 439 VGAAIGPVLTGYIAAISWDAVFYMLMTAALISGLLLTTLIIEEV 482
|
|
| TAIR|locus:2129176 G3Pp4 "AT4G17550" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 771 (276.5 bits), Expect = 8.0e-155, Sum P(2) = 8.0e-155
Identities = 153/237 (64%), Positives = 184/237 (77%)
Query: 267 EEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFL 326
EED + GEG + E K ++VG ++A IPGV PFALCLFF+KLVAYTFL
Sbjct: 292 EEDLGTDVEGDGEGSSGSGSGYENK---RSVGLLQACMIPGVIPFALCLFFSKLVAYTFL 348
Query: 327 YWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYC 386
YWLPFY+S T + G+Y+S + AGNLSTLFDVGG++GGIL G+ISD+ ARA TAA+FMY
Sbjct: 349 YWLPFYLSQTTIGGEYVSVKTAGNLSTLFDVGGIVGGILCGYISDKFKARATTAAAFMYA 408
Query: 387 AIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALAT 446
AIPA+ Y SYG +S +NI LM + G+FVNGPYALITTAVSADLGTH SL+G+SRALAT
Sbjct: 409 AIPAMLVYHSYGGVSQTVNILLMMVAGLFVNGPYALITTAVSADLGTHKSLQGDSRALAT 468
Query: 447 VTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVVAEVAAK 503
VTAIIDGTGS GAA+GPLLTG++S W AVF ML+ AL +GLLLTRLV+AE+ K
Sbjct: 469 VTAIIDGTGSAGAALGPLLTGFLSTLGWQAVFYMLVVGALCAGLLLTRLVIAEIREK 525
|
|
| TAIR|locus:2056457 G3Pp5 "AT2G13100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1397 (496.8 bits), Expect = 6.8e-143, P = 6.8e-143
Identities = 269/479 (56%), Positives = 354/479 (73%)
Query: 31 SFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESR 90
+F HQ +VLI+TF AY S+HA+RK SIVKS L P S ++S
Sbjct: 24 TFTFHQILVLIITFTAYASFHASRKPPSIVKSVLGPPSLNSS------------------ 65
Query: 91 KLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGT 150
+ +GWAPFNG+ GT LGELDLAFLS YA GM+F+GHLGDR+DLR FL GM+G+
Sbjct: 66 ----SIDNGWAPFNGTQGTKRLGELDLAFLSSYALGMYFAGHLGDRIDLRYFLVFGMMGS 121
Query: 151 GLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWN 210
G+ T ++G+GYW NVH+ +Y+ VQ++ GLFQS GWP VV+VVGNW GK KRGLIMG+WN
Sbjct: 122 GILTLVFGLGYWMNVHTLGFYMSVQIVCGLFQSIGWPCVVSVVGNWCGKEKRGLIMGLWN 181
Query: 211 AHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDE 270
+HTS+GNI GS++AS++L +GWGWSFV+PG+++ G++VF+FL V+P +G + ++
Sbjct: 182 SHTSVGNILGSVIASSVLDFGWGWSFVLPGVLVLVSGVVVFMFLVVSPNDLGFEELGKEI 241
Query: 271 SLSPKKIGEGVTQPLLRRETK-------IEEK--AVGFIEAWKIPGVAPFALCLFFAKLV 321
+ +GE V + L + E + +++ A+GF+EAW++PGVAP+A CLFF+KLV
Sbjct: 242 EIE-MSLGENVEESLRKHEAEGAVLLENVDDSSFAIGFLEAWRLPGVAPYAFCLFFSKLV 300
Query: 322 AYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAA 381
AYTFLYWLP+Y+ HTAV G LS + AG LST+FDVGGVLGGI AG ISD++ ARA+T+
Sbjct: 301 AYTFLYWLPYYLRHTAVAGVNLSHKTAGILSTVFDVGGVLGGISAGFISDKIKARALTSI 360
Query: 382 SFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNS 441
+F+ +IPAL YR YG +S+ +NI LMFI+G+ VNGPYALITTAV+ADLGT S+KGN
Sbjct: 361 TFLALSIPALIMYRVYGSVSMFINIVLMFISGLLVNGPYALITTAVAADLGTQDSIKGNG 420
Query: 442 RALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVVAEV 500
RALATVTAIIDGTGSVGAA+GPLL GYIS+ W +VF ML+ + +GL L RL +E+
Sbjct: 421 RALATVTAIIDGTGSVGAALGPLLAGYISSRGWNSVFFMLIVSIFFAGLFLVRLAKSEI 479
|
|
| UNIPROTKB|E1C5M0 SLC37A2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1188 (423.3 bits), Expect = 9.5e-121, P = 9.5e-121
Identities = 249/472 (52%), Positives = 321/472 (68%)
Query: 35 HQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSW 94
++ + L++TF +YTSYH +RK SIVKS L ++L + P +S +W
Sbjct: 21 YRGLTLVLTFLSYTSYHLSRKPISIVKSQLHLNC--SALGTNPHN--------DSNSTTW 70
Query: 95 KLGDGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFT 154
WAPF+ + L G LD AFL YA GMF SG G+RL LR +L+ GM+ +G+FT
Sbjct: 71 C---SWAPFDQDNYKELFGALDNAFLVAYAIGMFISGIFGERLPLRYYLSGGMLLSGIFT 127
Query: 155 SLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTS 214
+L+G GY+ N+H +YY++VQ+ GL Q+TGWPSVVA VGNWFGK KRGLIMGIWN+HTS
Sbjct: 128 ALFGFGYFLNIHVLWYYIIVQVCNGLAQTTGWPSVVACVGNWFGKGKRGLIMGIWNSHTS 187
Query: 215 IGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSP 274
+GNI GSL+A A ++ WG SF+VPG+IIA VG++ F FL +PE VG + + ++ S
Sbjct: 188 VGNILGSLIAGAWVSSEWGLSFIVPGIIIAAVGIVCFFFLVEHPEDVGCNPPLQHDA-SD 246
Query: 275 KKIGEGVTQPLLR----RETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLP 330
+K EGVT +E E +A+ F+ A +IPGV F+LCL FAKLV+YTFLYWLP
Sbjct: 247 EKDPEGVTSEDRSSTDPKEPAEELEAISFLGALRIPGVVEFSLCLLFAKLVSYTFLYWLP 306
Query: 331 FYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPA 390
Y+ + A + ++ AG+LSTLFDVGG+LGGI AG ISD RA T + A P
Sbjct: 307 LYIVNVA----HFGAKEAGDLSTLFDVGGILGGIFAGLISDYTGGRATTCCVMLVVAAPM 362
Query: 391 LFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAI 450
LF Y G + +IA++ + G VNGPYALITTAVSADLGTH SLKGN+RAL+TVTAI
Sbjct: 363 LFLYNHVGQNGIGTSIAMLIVCGALVNGPYALITTAVSADLGTHESLKGNARALSTVTAI 422
Query: 451 IDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVVAEVAA 502
IDGTGSVGAA+GPLL G IS T W VF ML+AA +++ LLL R+VV EV A
Sbjct: 423 IDGTGSVGAALGPLLAGLISPTGWNNVFYMLIAADVLACLLLARVVVKEVRA 474
|
|
| UNIPROTKB|F1Q362 SLC37A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1178 (419.7 bits), Expect = 1.1e-119, P = 1.1e-119
Identities = 250/502 (49%), Positives = 332/502 (66%)
Query: 13 SRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTS 72
S PLG+R E + G + +F+ +L++TFF YT YH +RK S+VKS L Q+
Sbjct: 3 SHPPLGLRPKELVSGGD-TFRG---FILLLTFFIYTCYHMSRKPISVVKSRLH-QNCSEL 57
Query: 73 LKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGH 132
+K P S+ +W WAPF+ ++ LLG +D AFL YA GMF SG
Sbjct: 58 IK--PTNDSH-----SINDTTWC---DWAPFDRNNYKELLGAVDNAFLVAYAIGMFISGI 107
Query: 133 LGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAV 192
G+RL LR +L+ GM+ +GLFTSL+G+GY+ N+H +Y++++Q+ GL Q+TGWPSVV
Sbjct: 108 FGERLPLRYYLSAGMLLSGLFTSLFGLGYFWNIHMLWYFVLIQICNGLVQTTGWPSVVTC 167
Query: 193 VGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFL 252
VGNWFGK KRGLIMGIWN+HTS+GNI GSL+A + WG SFVVPG+I A +G++ FL
Sbjct: 168 VGNWFGKGKRGLIMGIWNSHTSVGNILGSLIAGVWVNEQWGLSFVVPGIITAAMGILTFL 227
Query: 253 FLPVNPESV---------GTDTNEEDESL--SPKKIG-EGVTQPLLRRETKIEEKAVGFI 300
FL PE V G + N++ E L SPK+ E + +E + A+ F+
Sbjct: 228 FLIEYPEDVDCTPPQHHGGLEENQDPEDLGNSPKESSLESAARG--SKEPSAQPAAISFL 285
Query: 301 EAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGV 360
A +IPGV F+LCL FAKLV+YTFLYWLP Y+ + A + S++ AG+LSTLFDVGG+
Sbjct: 286 GALRIPGVVEFSLCLLFAKLVSYTFLYWLPLYIFNVA----HFSAKEAGDLSTLFDVGGI 341
Query: 361 LGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPY 420
+GGI+AG ISD + RA T + A P +F Y S G + ++ ++ I G VNGPY
Sbjct: 342 IGGIMAGLISDYTNGRATTCCVMLILAAPMMFLYNSVGQKGITNSVVMLIICGALVNGPY 401
Query: 421 ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTM 480
ALITTAVSADLGTH SLKGN++AL+TVTAIIDGTGS+GAA+GPLL G IS T W VF M
Sbjct: 402 ALITTAVSADLGTHQSLKGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWNNVFYM 461
Query: 481 LMAAALISGLLLTRLVVAEVAA 502
L++A +++ LLL RLV E+ A
Sbjct: 462 LISADILACLLLCRLVYKEILA 483
|
|
| UNIPROTKB|F1Q2V8 SLC37A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 244/492 (49%), Positives = 325/492 (66%)
Query: 27 GRNLSFKNHQ--AIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQ 84
G + ++H+ +L++TFF YT YH +RK S+VKS L Q+ +K P S+
Sbjct: 20 GVRAALESHRFRGFILLLTFFIYTCYHMSRKPISVVKSRLH-QNCSELIK--PTNDSH-- 74
Query: 85 EPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLT 144
+W WAPF+ ++ LLG +D AFL YA GMF SG G+RL LR +L+
Sbjct: 75 ---SINDTTWC---DWAPFDRNNYKELLGAVDNAFLVAYAIGMFISGIFGERLPLRYYLS 128
Query: 145 VGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGL 204
GM+ +GLFTSL+G+GY+ N+H +Y++++Q+ GL Q+TGWPSVV VGNWFGK KRGL
Sbjct: 129 AGMLLSGLFTSLFGLGYFWNIHMLWYFVLIQICNGLVQTTGWPSVVTCVGNWFGKGKRGL 188
Query: 205 IMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESV--- 261
IMGIWN+HTS+GNI GSL+A + WG SFVVPG+I A +G++ FLFL PE V
Sbjct: 189 IMGIWNSHTSVGNILGSLIAGVWVNEQWGLSFVVPGIITAAMGILTFLFLIEYPEDVDCT 248
Query: 262 --------GTDTNEEDESL--SPKKIG-EGVTQPLLRRETKIEEKAVGFIEAWKIPGVAP 310
G + N++ E L SPK+ E + +E + A+ F+ A +IPGV
Sbjct: 249 PPQHHTSGGLEENQDPEDLGNSPKESSLESAARG--SKEPSAQPAAISFLGALRIPGVVE 306
Query: 311 FALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHIS 370
F+LCL FAKLV+YTFLYWLP Y+ + A + S++ AG+LSTLFDVGG++GGI+AG IS
Sbjct: 307 FSLCLLFAKLVSYTFLYWLPLYIFNVA----HFSAKEAGDLSTLFDVGGIIGGIMAGLIS 362
Query: 371 DRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSAD 430
D + RA T + A P +F Y S G + ++ ++ I G VNGPYALITTAVSAD
Sbjct: 363 DYTNGRATTCCVMLILAAPMMFLYNSVGQKGITNSVVMLIICGALVNGPYALITTAVSAD 422
Query: 431 LGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGL 490
LGTH SLKGN++AL+TVTAIIDGTGS+GAA+GPLL G IS T W VF ML++A +++ L
Sbjct: 423 LGTHQSLKGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWNNVFYMLISADILACL 482
Query: 491 LLTRLVVAEVAA 502
LL RLV E+ A
Sbjct: 483 LLCRLVYKEILA 494
|
|
| RGD|1564160 Slc37a2 "solute carrier family 37 (glycerol-3-phosphate transporter), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 245/506 (48%), Positives = 323/506 (63%)
Query: 11 RSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPD 70
RSS P GI FL R+ F+ +L++TF Y YH +RK SI+KS L D
Sbjct: 2 RSSLAP-GIWFLRAFS-RDSWFRG---FILLLTFLIYVCYHMSRKPISIIKSRLHQNCSD 56
Query: 71 TSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYAGGMFFS 130
+ + + + +W W+PF+ D LLG +D AFL YA GMF S
Sbjct: 57 I--------VRPINDTHDLNDTTWC---SWSPFDKDDYKELLGAVDNAFLVAYAIGMFIS 105
Query: 131 GHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVV 190
G G+RL LR +L+ GMV +GLFTSL+G+GY+ N+H +Y++++Q+ GL Q+TGWPSVV
Sbjct: 106 GIFGERLPLRYYLSAGMVLSGLFTSLFGLGYFWNIHMLWYFVLIQICNGLVQTTGWPSVV 165
Query: 191 AVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIV 250
VGNWFGK KRG IMGIWN+HTS+GNI GSL+A + WG SF+VPG+I A +G+I
Sbjct: 166 TCVGNWFGKGKRGFIMGIWNSHTSVGNILGSLIAGVWVNQHWGLSFIVPGIITAVMGVIT 225
Query: 251 FLFLPVNPESVGTDTNEEDESLSPKKIG--EGVTQPLLRRETKI------------EEKA 296
FLFL PE V + + L ++ + V P RE+ + E +A
Sbjct: 226 FLFLIEYPEDVDCTPPQHHDDLEKERDNPEDPVNSPYSSRESSVDIAASSSKEQGPEPEA 285
Query: 297 VGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFD 356
+ F+ A KIPGV F+LCL FAKLV+YTFLYWLP Y+ + A + S++ AG+LSTLFD
Sbjct: 286 ISFLGALKIPGVIEFSLCLLFAKLVSYTFLYWLPLYIFNVA----HFSAKEAGDLSTLFD 341
Query: 357 VGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFV 416
VGG++GGI+AG ISD + RA T + A P +F Y G + +I ++ I G+ V
Sbjct: 342 VGGIIGGIMAGLISDYTNGRATTCCVMLILAAPMMFLYNYIGQNGITSSIVMLIICGVLV 401
Query: 417 NGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTA 476
NGPYALITTAVSADLGTH SLKGN++AL+TVTAIIDGTGS+GAA+GPLL G IS T W
Sbjct: 402 NGPYALITTAVSADLGTHESLKGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWNN 461
Query: 477 VFTMLMAAALISGLLLTRLVVAEVAA 502
VF ML++A +++ LLL RLV E+ A
Sbjct: 462 VFYMLISADILACLLLCRLVYKEILA 487
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| UNIPROTKB|Q58CV5 SLC37A2 "Sugar phosphate exchanger 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1149 (409.5 bits), Expect = 1.3e-116, P = 1.3e-116
Identities = 238/482 (49%), Positives = 314/482 (65%)
Query: 35 HQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSW 94
++A +L++TF YT YH +RK S+VKS L + +Q + L+
Sbjct: 11 YRAFILLITFLIYTCYHMSRKPISVVKSRLHHNCSEV-----------IQPVNSTHSLND 59
Query: 95 KLGDGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFT 154
WAPF+ S+ LLG +D AFL YA GMF SG G+RL LR +LT GM+ +GLFT
Sbjct: 60 TTWCNWAPFDKSNYKELLGAVDNAFLVAYAIGMFISGIFGERLPLRYYLTAGMLLSGLFT 119
Query: 155 SLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTS 214
SL+G+GY+ N+H +Y+++VQ+ GL Q+TGWP+VV+ VGNWFGK KRGLIMGIWN+HTS
Sbjct: 120 SLFGLGYFWNIHVLWYFVLVQIFNGLVQTTGWPAVVSCVGNWFGKGKRGLIMGIWNSHTS 179
Query: 215 IGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDT-----NEED 269
+GNI GSL+A + WG SFVVPG+I A +G+I F FL PE V N E+
Sbjct: 180 VGNILGSLLAGVWVDQQWGLSFVVPGVITAIMGIITFFFLIEYPEDVDCSPPQHHGNPEE 239
Query: 270 ESLSPKKIGEGVT---QPLLR------RETKIEEKAVGFIEAWKIPGVAPFALCLFFAKL 320
P+ G + + L +E + A+ F A +IPGV F+LCL FAKL
Sbjct: 240 SQDQPEDPANGPSCNKESSLESAVTCSKEASAQPSAISFFGALRIPGVVEFSLCLLFAKL 299
Query: 321 VAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITA 380
V+YTFLYWLP Y+S+ + +++ AG+LSTLFDVGG++GGILAG +SD ++ RA T
Sbjct: 300 VSYTFLYWLPLYISNVV----HFTAKEAGDLSTLFDVGGIIGGILAGLVSDYINGRATTC 355
Query: 381 ASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGN 440
+ A P +F Y G + ++I ++ I G VNGPYALITTAVSADLGTH SLKGN
Sbjct: 356 CVMLILAAPMMFLYNHVGQRGIGISIVMLLICGALVNGPYALITTAVSADLGTHKSLKGN 415
Query: 441 SRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVVAEV 500
++AL+TVTAIIDGTGS+GAA+GPLL G IS T W VF ML+AA +++ LLL RLV E+
Sbjct: 416 AKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWNNVFYMLIAADVLACLLLCRLVYKEI 475
Query: 501 AA 502
A
Sbjct: 476 LA 477
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7SY29 | SPX2_DANRE | No assigned EC number | 0.4968 | 0.8358 | 0.8866 | yes | no |
| Q9C5L3 | GLPT1_ARATH | No assigned EC number | 0.7326 | 0.9656 | 0.9674 | yes | no |
| Q58CV5 | SPX2_BOVIN | No assigned EC number | 0.4927 | 0.8587 | 0.9164 | yes | no |
| Q5M7K3 | SPX2_XENTR | No assigned EC number | 0.4570 | 0.8816 | 0.9258 | yes | no |
| Q8TED4 | SPX2_HUMAN | No assigned EC number | 0.4788 | 0.9274 | 0.9700 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00290368 | hypothetical protein (523 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 524 | |||
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 1e-44 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 4e-38 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-26 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 3e-26 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 7e-25 | |
| PRK11663 | 434 | PRK11663, PRK11663, regulatory protein UhpC; Provi | 2e-23 | |
| PRK09556 | 467 | PRK09556, uhpT, sugar phosphate antiporter; Review | 5e-23 | |
| TIGR00712 | 438 | TIGR00712, glpT, glycerol-3-phosphate transporter | 1e-21 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-20 | |
| PRK11273 | 452 | PRK11273, glpT, sn-glycerol-3-phosphate transporte | 5e-14 | |
| COG2223 | 417 | COG2223, NarK, Nitrate/nitrite transporter [Inorga | 2e-09 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 2e-08 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-07 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 6e-07 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-06 | |
| TIGR02332 | 412 | TIGR02332, HpaX, 4-hydroxyphenylacetate permease | 1e-05 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 1e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-05 | |
| TIGR00886 | 366 | TIGR00886, 2A0108, nitrite extrusion protein (nitr | 1e-04 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-04 | |
| COG2807 | 395 | COG2807, CynX, Cyanate permease [Inorganic ion tra | 3e-04 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 1e-44
Identities = 116/400 (29%), Positives = 171/400 (42%), Gaps = 40/400 (10%)
Query: 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYY 171
LG L AF Y F G L DR + R F+ G++ + + L+G S + +
Sbjct: 66 LGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGF-----SPSLFLF 120
Query: 172 LVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWN-AHTSIGNITGSLVASALLTY 230
V+ +L G FQ GWP + +WF + +RG IWN +H G + + A +
Sbjct: 121 AVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180
Query: 231 GWGW--SFVVPGLIIAFVGLIVFLFLPVNPESVGTDT-----NEEDESLSPKKIGEGVTQ 283
GW +F PG+I V LI+ L P+S G + E +K EG+T
Sbjct: 181 HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTA 240
Query: 284 PLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYL 343
+ + ++ K + + AL F +V Y W P Y+S K
Sbjct: 241 WQIFVKYVLKNKLIWLL-----------ALANVFVYVVRYGINDWGPLYLSEV----KGF 285
Query: 344 SSEMAGNLSTLFDVGGVLGGILAGHISDRLDA--RAITAASFMYCAIPALFFYRSYGHLS 401
S A +LF+V G+ G +LAG +SD+L R A FM +L Y + S
Sbjct: 286 SLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGS 345
Query: 402 LALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSV-GAA 460
L+ L+FI G + GP LI A A+ +A T T + + GAA
Sbjct: 346 YLLDAILLFIIGFLIYGPQMLIGLAA-AEFVP-------KKAAGTATGFVGLFAYLIGAA 397
Query: 461 IGPLLTGYIS-ATSWTAVFTMLMAAALISGLLLTRLVVAE 499
+ L GYI+ W F +L AAL++ LLL + AE
Sbjct: 398 LAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWNAE 437
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Length = 448 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 4e-38
Identities = 102/372 (27%), Positives = 157/372 (42%), Gaps = 29/372 (7%)
Query: 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYY 171
LG L +F Y F G + DR + R+FL +G++ + +G S +
Sbjct: 32 LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF-----STSLWVM 86
Query: 172 LVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWN-AHTSIGNI-TGSLVASALLT 229
+ L G+FQ GWP V WF +S+RG + WN +H G + ++
Sbjct: 87 AALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL 146
Query: 230 YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRE 289
Y W W F+VPG+I V LI FL L +P+S G EE + P E + L +++
Sbjct: 147 YSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQ 206
Query: 290 TKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAG 349
+ + + W I +L F +V L W P Y++ K S E A
Sbjct: 207 IFL-QYVLLNKVLWYI------SLGYVFVYVVRTGILDWSPLYLTQE----KGFSKEKAS 255
Query: 350 NLSTLFDVGGVLGGILAGHISDRL--DARAITAASFMYCAIPALFFYRSYGHLSLALNIA 407
TL+++GG++G +LAG +SD+L R A FM I +L Y + +++
Sbjct: 256 WAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLI 315
Query: 408 LMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTG 467
+F G V GP LI G +S +A T + +G + L G
Sbjct: 316 CLFALGFLVYGPQMLI--------GVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLG 367
Query: 468 YI-SATSWTAVF 478
Y+ W F
Sbjct: 368 YLADGFGWAGAF 379
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[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 1e-26
Identities = 95/381 (24%), Positives = 151/381 (39%), Gaps = 72/381 (18%)
Query: 118 AFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177
AF YA G +G+L DR R L +G++ L + L S + LV + L
Sbjct: 42 AFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF-----ASSLWLLLVGRFL 96
Query: 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT-YGWGWSF 236
GL +P+ A++ WF +RG +G+++A +G + G L+ L GW W F
Sbjct: 97 LGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLF 156
Query: 237 VVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKA 296
++ ++ + L++ L
Sbjct: 157 LILAILGLLLALLLLFLL------------------------------------------ 174
Query: 297 VGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFD 356
+ AL F Y L +LP Y+ + LS+ AG L +LF
Sbjct: 175 ---------RLLLLLALAFFLLSFGYYGLLTYLPLYL----QEVLGLSAAEAGLLLSLFG 221
Query: 357 VGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFV 416
+GG+LG +L G +SDRL R + + + AL SLAL + + + G +
Sbjct: 222 LGGILGALLGGLLSDRLGRRRLLLLIGL--LLAALGLLLLALAPSLALLLVALLLLGFGL 279
Query: 417 NGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWT 475
+ + T S A T + + + GS+G A+GPLL G + T +
Sbjct: 280 GFAFPALLTLASELAPPE--------ARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG 331
Query: 476 AVFTMLMAAALISGLLLTRLV 496
VF +L A AL++ LLL L
Sbjct: 332 GVFLILAALALLAALLLLLLP 352
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MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-26
Identities = 105/388 (27%), Positives = 168/388 (43%), Gaps = 34/388 (8%)
Query: 118 AFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177
AF Y G F G L DR R L V +V G+FT L + G S Y ++++L
Sbjct: 37 AFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGL--QAFAGAYVSLY---ILRVL 91
Query: 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGS-LVASALLTYGWGWSF 236
G ++ +P ++ +V +WF S+R + I+N+ +G I G LV L+ + W W+F
Sbjct: 92 LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAF 151
Query: 237 VVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKA 296
++ G++ G++ F+P P+ T EE + + E + K
Sbjct: 152 IIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGK------GPSTPKK 205
Query: 297 VGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFD 356
E K V AL F + FL W P Y+ V + LS AG +++L
Sbjct: 206 YQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYL----VQERGLSILEAGFMASLPG 261
Query: 357 VGGVLGGILAGHISDRLDAR------AITAASFMYCAIPALFFYRSYGHLSLALNIALMF 410
+ G +G IL G +SD L R A A + L F +Y ++ A +AL+
Sbjct: 262 IVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAA-LALVA 320
Query: 411 ITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYIS 470
+ G F G A+ +S + +I+ G++G +GP++ G I+
Sbjct: 321 L-GFFGLGAGAIGWALISDNA--------PGNIAGLTGGLINSLGNLGGIVGPIVIGAIA 371
Query: 471 AT--SWTAVFTMLMAAALISGLLLTRLV 496
AT S+ ++ A ALI L LV
Sbjct: 372 ATTGSFAGALMVVAALALIGALSYLLLV 399
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 7e-25
Identities = 82/358 (22%), Positives = 135/358 (37%), Gaps = 47/358 (13%)
Query: 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFY 169
+G L AF YA +G L DR R L +G++ L L S +
Sbjct: 32 TEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLF-----ASSLW 86
Query: 170 YYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT 229
LV+++L GL +P+ A++ +WF +RG +G+ +A +G G L+ L +
Sbjct: 87 LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLAS 146
Query: 230 -YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRR 288
+GW +F++ ++ ++ L LP P P +R
Sbjct: 147 LFGWRAAFLILAILALLAAVLAALLLPRPP-------------------------PESKR 181
Query: 289 ETKIEEKAVGFIEAWKI---PGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSS 345
EE + AWK+ V L L + L +LP Y LS+
Sbjct: 182 PKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEV-----LGLSA 236
Query: 346 EMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALN 405
+AG L L + G +G +L G +SDRL R + + + AL S
Sbjct: 237 LLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWL 296
Query: 406 IALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGP 463
+ + + G + + VS T + + + GS+G A+GP
Sbjct: 297 LVALLLLGFGAGLVFPALNALVSDLAPKEER--------GTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|183266 PRK11663, PRK11663, regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-23
Identities = 109/411 (26%), Positives = 172/411 (41%), Gaps = 80/411 (19%)
Query: 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYY 171
+G L F Y F SG + DR + R F+ +G++ TG+ L+G S + +
Sbjct: 60 IGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS-----SSLWAF 114
Query: 172 LVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWN-AHTSIGNITGSLVASALLTY 230
++ +L FQ GWP ++ W+ +++RG IWN AH G + +V + L Y
Sbjct: 115 ALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY 174
Query: 231 GWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDT-----NEEDESLSPKKIGEGVTQPL 285
GW + ++ G+I VGL + L P+++G + ++ E L+ ++ G G++
Sbjct: 175 GWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALE-LAQQQEGAGLS--- 230
Query: 286 LRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVD---GKY 342
R+E I K V + ++ YV A++ Y
Sbjct: 231 -RKE--ILTKYV------------------LLNPYIWLLSFSYVLVYVVRAAINDWGNLY 269
Query: 343 LSSEMAGNLST------LFDVGGVLGGILAGHISDRL--DARAITAASFMYCAIPALFFY 394
+S + +L T +F++GG +G ++AG SD+L R F A
Sbjct: 270 MSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF------AAGIL 323
Query: 395 RSYGHL------SLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVT 448
S G L S + A F G FV GP LI A A +H G +
Sbjct: 324 LSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMA--AAECSHKEAAGAA------- 374
Query: 449 AIIDGTGSVG--AAIGPLLTGY-----ISATSWTAVFTMLMAAALISGLLL 492
TG VG A +G L+GY + WT F ++ AA IS LLL
Sbjct: 375 -----TGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLL 420
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Length = 434 |
| >gnl|CDD|236564 PRK09556, uhpT, sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-23
Identities = 102/415 (24%), Positives = 157/415 (37%), Gaps = 55/415 (13%)
Query: 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYY 171
LG + L F Y G G+ D + + FL ++ + + +G S
Sbjct: 66 LGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLM 125
Query: 172 LVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYG 231
+ + L+G FQSTG P + + W + KRG +G WN ++G VA Y
Sbjct: 126 IALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF 185
Query: 232 WGWS----FVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEE--DESLSPKKIGEGVTQPL 285
+ F+ P +I +G I + +PE +G EE E +S + E + +
Sbjct: 186 FDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDK-ETESTDM 244
Query: 286 LRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLY--------WLPFYVSHTA 337
+ + +E + + + LC A FLY W P Y
Sbjct: 245 TKWQIFVE---------YVLKNPVIWLLC------FANIFLYIVRIGIDNWSPVYAFQEL 289
Query: 338 VDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDA-RAITAASFMYCAIPALFFYRS 396
S E A N TLF++G ++G +L G +SD + RA+ A + I L Y+
Sbjct: 290 ----GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ- 344
Query: 397 YGHLSLALNIALMFITGMFVNGPYALI------------TTAVSADLGTHSSLKGNSRAL 444
+ +L F G V GP LI + GT + L G+S A
Sbjct: 345 HATSEYMYLASL-FALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAK 403
Query: 445 ATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVVAE 499
+ I D T + G LTG W F L AA+ L+ + V E
Sbjct: 404 VGLGMIADPTKNGTPIFGYTLTG------WAGTFAALDIAAIGCICLMAIVAVME 452
|
Length = 467 |
| >gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 1e-21
Identities = 95/398 (23%), Positives = 165/398 (41%), Gaps = 33/398 (8%)
Query: 113 GELDLAFLSI---YAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFY 169
GEL A +I Y F G + DR + R+FL G++ + L G W S
Sbjct: 61 GELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWAT-SSIA 119
Query: 170 YYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWN-AHTSIGNITGSLVASALL 228
V+ L G FQ GWP + +W+ +S+RG I+ IWN AH G I LV +
Sbjct: 120 IMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA 179
Query: 229 TY-GWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLR 287
+ W + P + V L F + P+S G EE + P E Q L
Sbjct: 180 WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTA 239
Query: 288 RETKIE----EKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYL 343
+E ++ K + +I A+ F L+ Y L W P Y+ + K+
Sbjct: 240 KEIFMQYVLPNKLLWYI-----------AIANVFVYLLRYGVLDWSPTYLK----EVKHF 284
Query: 344 SSEMAGNLSTLFDVGGVLGGILAGHISDRL--DARAITAASFMYCAIPALFFYRSYGHLS 401
+ + + L++ G+ G +L G +SD++ R T FM A+ Y +
Sbjct: 285 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGN 344
Query: 402 LALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAI 461
+++ M + G + GP LI + +L + G + + + G+ + A +
Sbjct: 345 PLVDMICMIVIGFLIYGPVMLIGLH-ALELAPKKA-AGTAAGFTGLFGYLGGSVAASAIV 402
Query: 462 GPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVVAE 499
G + + W F +++ ++++ +LL +++ E
Sbjct: 403 GYTVDFF----GWDGGFMVMIGGSILAVILLIVVMIGE 436
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar [Transport and binding proteins, Other]. Length = 438 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 2e-20
Identities = 95/354 (26%), Positives = 143/354 (40%), Gaps = 34/354 (9%)
Query: 126 GMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTG 185
G F G L DR+ R L ++ +FT L + NV L+++ LAGL
Sbjct: 68 GALFFGPLADRIGRRRVLLWSILLFSVFTLLCALA--TNVTQL---LILRFLAGLGLGGL 122
Query: 186 WPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIA 244
P++ A+V + K RG +G+ IG G +A L+ +GW F V G+
Sbjct: 123 MPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPL 182
Query: 245 FVGLIVFLFLP--------VNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKA 296
+ L++ FLP PE+V N + + P + +
Sbjct: 183 LLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQM---QAEAQSALPEQKATQGTKRSV 239
Query: 297 VGFIEAWKIPGVAPFALCLFFAKLVAYTFLY-WLPFYVSHTAVDGKYLSSEMAGNLSTLF 355
+ K + L+F LV FL WLP + S +A LF
Sbjct: 240 FKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELG-----FSLSLAATGGALF 294
Query: 356 DVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMF 415
+ GGV+G I+ G ++DRL R +TA + A+ A+ + +L L L I G F
Sbjct: 295 NFGGVIGSIIFGWLADRLGPR-VTALLLLLGAVFAVLVGSTLFSPTLLL--LLGAIAGFF 351
Query: 416 VNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYI 469
VNG + L +L + AT G G +GA IGP+L GY+
Sbjct: 352 VNGGQSG--------LYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|236889 PRK11273, glpT, sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 5e-14
Identities = 112/474 (23%), Positives = 181/474 (38%), Gaps = 80/474 (16%)
Query: 44 FFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPF 103
FF Y +Y+ RK ++ ++P YL E SR
Sbjct: 35 FFGYAAYYLVRKNFAL---------------AMP----YLVEQGFSR------------- 62
Query: 104 NGSDGTALLGELDLAFLSI-YAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYW 162
G G AL G +SI Y F G + DR + R+FL G++ G W
Sbjct: 63 -GDLGFALSG------ISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW 115
Query: 163 GNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWN-AHTSIGNITGS 221
S V+ L G FQ GWP + +W+ + +RG I+ +WN AH G +
Sbjct: 116 AT-SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPL 174
Query: 222 LVASALLTYG-WGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEG 280
L + + W + +P V L F + P+S G EE ++ P E
Sbjct: 175 LFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEK 234
Query: 281 VTQPLLRRETKIE----EKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFY---V 333
Q L ++ ++ K + +I A+ F L+ Y L W P Y V
Sbjct: 235 HEQELTAKQIFMQYVLPNKLLWYI-----------AIANVFVYLLRYGILDWSPTYLKEV 283
Query: 334 SHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRL--DARAITAASFMYCAIPAL 391
H A+D S A L++ G+ G +L G +SD++ R T FM A
Sbjct: 284 KHFALD----KSSWA---YFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 336
Query: 392 FFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAII 451
Y + +++A M + G + GP LI G H+ +A T
Sbjct: 337 IVYWLNPAGNPTVDMACMIVIGFLIYGPVMLI--------GLHALELAPKKAAGTAAGFT 388
Query: 452 DGTGSVGAAIGP-LLTGY-ISATSWTAVFTMLMAAALISGLLLTRLVVAEVAAK 503
G +G ++ + GY + W F +++ ++++ +LL +++ E
Sbjct: 389 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRHH 442
|
Length = 452 |
| >gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 87/381 (22%), Positives = 141/381 (37%), Gaps = 72/381 (18%)
Query: 131 GHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGL----FQSTGW 186
G L DR R + + M+ + G+ + S + LV+ +L GL F
Sbjct: 70 GFLTDRFGGRKWTILSMLLLLI--PCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVG-- 125
Query: 187 PSVVAVVGNWFGKSKRGLIMGIW---NAHTSIGNITGSLVASALLTYGWGWSFVVPGLII 243
+ +F K K+GL +GI N ++ + LVA A W + + +
Sbjct: 126 ---MPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVAL 182
Query: 244 AFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAV-GFIEA 302
A ++ +L + PE + ++ + + KAV +
Sbjct: 183 AIAAVLAWLGMNDVPEH----------------------RASVKPQLPAQLKAVFSNKDT 220
Query: 303 WKIPGVAPFALCLF----FAKLVAYTFLYWLP-FYVSHTAVDGKYLSSEMAGNLSTLFDV 357
W L L F V ++ +LP + V+ LS AG ++ LF +
Sbjct: 221 W--------LLSLLYFATFGGFVGFSA--YLPMYLVTQFG-----LSPVTAGLIAFLFPL 265
Query: 358 GGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVN 417
G L L G +SDR+ R +T A F+ A+ A L+L + G FV
Sbjct: 266 IGALARPLGGWLSDRIGGRRVTLAVFVGMALAAAL---------LSLFLTGFGHGGSFVV 316
Query: 418 GPYALITTAVSADLGTHSSLKGN----SRALATVTAIIDGTGSVGAAIGPLLTGYISAT- 472
+ V A LG S K + VT I+ G +G PL G
Sbjct: 317 FVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT 376
Query: 473 -SWTAVFTMLMAAALISGLLL 492
S+T F +L+A L++ +L
Sbjct: 377 GSYTGAFMLLLAFYLVALVLT 397
|
Length = 417 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 99/408 (24%), Positives = 148/408 (36%), Gaps = 86/408 (21%)
Query: 126 GMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTG 185
G G L DR+ + L V + GLF+ F LV ++L G+
Sbjct: 66 GALLGGRLADRIGRKRILIVSVALFGLFSLATAQ-----AWDFPSLLVARLLTGVGLGGA 120
Query: 186 WPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAF 245
P+++A+ G RG + + G S++ L W I +
Sbjct: 121 LPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG-VLAAGDAAWR------HIFY 173
Query: 246 VG-----LIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFI 300
VG L+V L + PES + ++ +
Sbjct: 174 VGGVGPLLLVPLLMRWLPES-----------------------RAFAQAAGAGKQRAPVL 210
Query: 301 EAWKIPGVAPFALCL----FFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFD 356
A G A L L FF +V Y L WLP + + G+ LS AG + F+
Sbjct: 211 RALFGEGRATATLLLWISYFFTLIVLYFLLNWLP-----SLLVGQGLSRSQAGLVQIAFN 265
Query: 357 VGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALM----FIT 412
+GG LG +L G + DRL R + +Y I A S L+ A + A M F
Sbjct: 266 IGGALGSLLIGALMDRLRPRRVV--LLIYAGILA-----SLAALAAAPSFAGMLLAGFAA 318
Query: 413 GMFVNGP----YALITTAVSADL-GTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTG 467
G+FV G YAL + GT G A+A G +G+ GPLL G
Sbjct: 319 GLFVVGGQSVLYALAPLFYPTQVRGT-----GVGAAVA--------VGRLGSMAGPLLAG 365
Query: 468 YISATSWTAVFTMLMAAALISGLLLTRLVVAEVAAKFVESRSQSGNQS 515
+ A + V + + +I +VA +AA + SR +
Sbjct: 366 QLLALGRSTVGVIGASIPVI--------LVAALAALLLVSRPSRADPC 405
|
Length = 406 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 43/190 (22%), Positives = 69/190 (36%), Gaps = 12/190 (6%)
Query: 315 LFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLD 374
LF A +A L + + +S G L T F +G L LAG +SDR
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 375 ARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTH 434
R + + A+ L + L + L + G+ + ++
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASSLWLL---LVLRVLQGLGGGALFPAAAALIAD----- 112
Query: 435 SSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYI-SATSWTAVFTMLMAAALISGLLLT 493
R A ++ +GAA+GPLL G + S W A F +L AL++ +L
Sbjct: 113 -WFPPEERGRA--LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAA 169
Query: 494 RLVVAEVAAK 503
L+
Sbjct: 170 LLLPRPPPES 179
|
Length = 346 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 79/387 (20%), Positives = 136/387 (35%), Gaps = 63/387 (16%)
Query: 120 LSIYAGGMFFSG----HLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQ 175
++ YA G+ L RL+ R L + + L + SF L+ +
Sbjct: 54 ITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP-----SFAVLLLAR 108
Query: 176 MLAGL----FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTY- 230
LAGL F S +V KRG + + ++ + G + + L
Sbjct: 109 ALAGLAHGVFWSIAAALAARLVP----PGKRGRALALVFTGLTLATVLGVPLGTFLGQLF 164
Query: 231 GWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQP-LLRRE 289
GW +F+ ++ L+++ LP + +S G T LLRR
Sbjct: 165 GWRATFLAIAVLALLALLLLWKLLPPS-------------EISGSLPGPLRTLLRLLRR- 210
Query: 290 TKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAG 349
+ YT++ V+ S
Sbjct: 211 -------------PGVLLGLLATFLFMTGHFALYTYIRPFLESVAG-------FSVSAVS 250
Query: 350 NLSTLFDVGGVLGGILAGHISDRLDARA-ITAASFMYCAIPALFFYRSYGHLSLALNIAL 408
+ F + G +G +L G ++DR RA I A + A+ AL F + S AL +AL
Sbjct: 251 LVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGA----SPALALAL 306
Query: 409 MFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGY 468
+F+ G + + T ++ + L A + A + ++GAA+G L+
Sbjct: 307 LFLWGFAFSPALQGLQTRLARLAPDAADL-----AGSLNVAAFNLGIALGAALGGLVLDA 361
Query: 469 ISATSWTAVFTMLMAAALISGLLLTRL 495
+ + V L+ AL+ LL R
Sbjct: 362 LGYAATGWVGAALLLLALLLALLSARK 388
|
Length = 394 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 29/142 (20%), Positives = 62/142 (43%), Gaps = 10/142 (7%)
Query: 119 FLSIYAGGMF----FSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVV 174
L+ YA G SG L DR + L VG+ L T+++ + + ++
Sbjct: 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----SNITVLIIA 57
Query: 175 QMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTY-GWG 233
+ L G + + A++ + + +RG+ +G+ +A ++G + G + L + GW
Sbjct: 58 RFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWR 117
Query: 234 WSFVVPGLIIAFVGLIVFLFLP 255
F+ ++ +++ LP
Sbjct: 118 APFLFLAILALAAFILLAFLLP 139
|
Length = 141 |
| >gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 60/307 (19%), Positives = 113/307 (36%), Gaps = 25/307 (8%)
Query: 173 VVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTY-- 230
++++L G+ ++ P ++ + WF R ++ + G +++ +L
Sbjct: 101 LLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG 160
Query: 231 -----GWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPL 285
GW W F++ G +G++ + +L +P+ E+ ++L + +T L
Sbjct: 161 LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLT--L 218
Query: 286 LRRETKIEEKAVGFIEAWK---IPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKY 342
+ E A+ + P + + L F W P + + G
Sbjct: 219 EQPEGAFAHAAMPQRSMLREIFTPAIMLYTLAYFCLTNTLSAINIWTP-QILQSFNQGS- 276
Query: 343 LSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSL 402
S+ M G L+ + + G I SDRL R A A + H +
Sbjct: 277 -SNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLI 335
Query: 403 ALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIG 462
L +M G F T S L +A A A+I+ TG++G+A+
Sbjct: 336 QLLGIIMASMGSFSAMAIFWTTPDQSISL----------QARAIAIAVINATGNIGSALS 385
Query: 463 PLLTGYI 469
P L G +
Sbjct: 386 PFLIGIL 392
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 67/361 (18%), Positives = 121/361 (33%), Gaps = 43/361 (11%)
Query: 130 SGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189
+G L R R + L + L G+ + ++ +++ G P
Sbjct: 57 TGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-----PNLELMIIFRVIQGFGGGPLIPLS 111
Query: 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGL 248
+ + N + KRG M IW + G + ++ Y W W F++ I V +
Sbjct: 112 FSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVV 171
Query: 249 IVFLFLPVNPE--------------SVGT-------------DTNEEDESLSPKKIGEGV 281
+ F LP + SVG + +E L G
Sbjct: 172 VAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVA 231
Query: 282 TQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGK 341
+ E + V +K + + L Y Y LP Y+
Sbjct: 232 IIAFVVWELTDDNPLVDL-RLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV----L 286
Query: 342 YLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLS 401
++ AG + +L +AG + D++D R + + A+ + ++ +
Sbjct: 287 GYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDT 346
Query: 402 LALNIAL-MFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAA 460
L IAL FI G + + +TT + L H +L+ T + GS+G A
Sbjct: 347 PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPH--KIARGSSLSNFTRQL--GGSIGTA 402
Query: 461 I 461
+
Sbjct: 403 L 403
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 12/157 (7%)
Query: 343 LSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSL 402
LS+ AG + + F +G LG +LAG++SDR R + + A+ +L + L
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90
Query: 403 ALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIG 462
+ F+ G+ Y ++ + +GA +G
Sbjct: 91 ---LVGRFLLGLGGGALYPAAAALIAEWFPPKE--------RGRALGLFSAGFGLGALLG 139
Query: 463 PLLTGYI-SATSWTAVFTMLMAAALISGLLLTRLVVA 498
PLL G + + W +F +L L+ LLL L+
Sbjct: 140 PLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRL 176
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 62/297 (20%), Positives = 102/297 (34%), Gaps = 41/297 (13%)
Query: 128 FFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWP 187
G L D+ R T+ + L ++ + V S+ L++++ G +
Sbjct: 55 IILGFLVDKFGPRYTTTLSL----LLLAIPCLWAGLAVQSYSVLLLLRLFIG-IAGGSFA 109
Query: 188 SVVAVVGNWFGKSKRGLIMGIWNAHTSIGN-----ITGSLVASALLTYG------WGWSF 236
S + + +F K +G +G+ ++G + ++ S + G WGW+F
Sbjct: 110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF 169
Query: 237 V-VPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEK 295
V VP I+ L++F P G+ T L + +
Sbjct: 170 VIVPAGILLLPALLIFFVGADTP------------------PGKPATGKLSFKGARWSVG 211
Query: 296 AVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPF--YVSHTAVDGKYLSSEMAGNLST 353
+ K+ A L + TF +L + D LS AG ++
Sbjct: 212 TGALGDQLKVFR---DRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYAS 268
Query: 354 LFDVGGVLGGILAGHISDRLDARAITAASF-MYCAIPALFFYRSYGHLSLALNIALM 409
L + G L L G ISDRL SF L LSLA+ I L
Sbjct: 269 LGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLF 325
|
[Transport and binding proteins, Anions]. Length = 366 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
Query: 119 FLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLA 178
F+ + G F G+L DR + L + + T + L ++ +LV ++L
Sbjct: 137 FVGVLLGSFVF-GYLSDRFGRKKVLLLSTLVTAVSGVLTAFS-----PNYTVFLVFRLLV 190
Query: 179 GLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFV- 237
G+ W V + + K +R ++ + S+G + LVA + W W +
Sbjct: 191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--DWRWLQLA 248
Query: 238 --VPGLIIAFVGLIVFLFLPVNP 258
+P F+ ++ F+P +P
Sbjct: 249 VSLPT----FLFFLLSWFVPESP 267
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 71/378 (18%), Positives = 133/378 (35%), Gaps = 57/378 (15%)
Query: 123 YAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQ 182
+ + L R L + ++ + +G + +LAG
Sbjct: 60 FGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG------GLPLLFLGTLLAGAGI 113
Query: 183 STGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLI 242
+ + +++ F K + GL+ G+++ G + +A L + GW + G
Sbjct: 114 AVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL-GFW 171
Query: 243 IAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEA 302
L + ++LP Q L + I K V +
Sbjct: 172 ALLALLALLIWLP---------------------------QALREQAASIATKLVSVRKV 204
Query: 303 WKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLG 362
W+ P L + L+ Y + WLP + + LS+ AG+L +L + +
Sbjct: 205 WRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-----RGLSAAEAGSLLSLMQLAQLPT 259
Query: 363 GILAGHISDR-LDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYA 421
+L ++ R + R + + + + + L + AL+ G P A
Sbjct: 260 ALLIPLLARRSKNQRPLVVLALLLMLVGLVGL--LLAPGQLPILWALLLGLGQGGAFPLA 317
Query: 422 LITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYI-SAT-SWTAVFT 479
L + + ++ A ++ + G G + AA GP L G++ AT SW+A
Sbjct: 318 LTLILLRSS---------DAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLV 368
Query: 480 MLMAAA---LISGLLLTR 494
+L A LI GL R
Sbjct: 369 LLALATLLMLIFGLRAGR 386
|
Length = 395 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 524 | |||
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.98 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.98 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.97 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.97 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.95 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.95 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.95 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.94 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.94 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.92 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.91 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.91 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.9 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.9 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.9 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.9 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.89 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.89 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.89 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.89 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.87 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.87 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.85 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.84 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.83 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.81 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.78 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.75 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.73 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.71 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.67 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.57 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.53 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.52 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.51 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.49 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.48 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.46 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.46 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.44 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.44 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.44 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.44 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.43 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.43 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.41 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.4 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.4 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.4 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.38 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.38 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.38 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.36 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.36 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.36 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.35 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.35 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.35 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.34 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.34 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.33 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.32 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.32 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.32 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.32 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.32 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.32 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.31 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.31 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.31 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.31 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.3 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.3 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.3 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.29 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.29 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.29 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.28 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.28 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.28 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.28 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.28 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.27 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.27 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.27 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.25 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.24 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.23 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.23 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.23 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.23 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.22 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.22 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.22 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.21 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.21 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.2 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.2 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.18 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.17 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.16 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.15 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.14 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.14 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.13 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.13 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.13 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.12 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.1 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.09 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.08 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.08 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.08 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.07 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.06 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.05 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.05 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.03 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.02 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.0 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.99 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.99 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.97 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.97 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.95 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.95 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.95 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.93 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.93 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.93 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.92 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.91 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.89 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.88 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.87 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.86 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.85 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.85 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.83 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.82 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.8 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.79 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.73 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.71 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.67 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.62 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.61 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.59 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.57 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.57 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.57 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.55 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.54 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.53 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.46 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.43 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.43 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.4 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.36 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.34 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.34 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.3 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.3 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.29 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.29 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.26 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.23 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.23 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.21 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.15 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.11 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.91 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.88 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.86 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.85 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.85 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.8 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.66 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.65 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.59 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 97.56 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.51 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.5 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.4 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.38 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.36 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.35 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.13 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.97 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.95 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.93 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.77 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.5 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.28 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.98 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.74 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 95.64 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.16 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.88 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 94.83 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.11 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 92.87 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 92.58 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 91.19 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 90.86 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 90.19 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 88.51 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 87.55 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 86.3 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 81.61 |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=343.42 Aligned_cols=412 Identities=30% Similarity=0.481 Sum_probs=352.2
Q ss_pred cccccccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCC
Q 009816 28 RNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSD 107 (524)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 107 (524)
.++..+++|+++++.++++|...|+.|.+++.+.|.+.++ .++|.
T Consensus 19 ~~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~------------------------------~~lsk----- 63 (448)
T COG2271 19 IDKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIED------------------------------GGLSK----- 63 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHh------------------------------cCCCH-----
Confidence 3456788999999999999999999999999999999999 77877
Q ss_pred chhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchh
Q 009816 108 GTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWP 187 (524)
Q Consensus 108 ~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~ 187 (524)
+|+|++.+++.+.|+++..+.|.++||.+.|+.+..++++.++..++++++ ++++.+.+..++.|..+|..+|
T Consensus 64 --~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs-----~s~~~~~~l~~lng~fQg~Gwp 136 (448)
T COG2271 64 --TQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS-----PSLFLFAVLWVLNGWFQGMGWP 136 (448)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999999997 8999999999999999999999
Q ss_pred hHHHHHhhccccccccceehhhhhhhhhHHHHHHHHH--HHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCC
Q 009816 188 SVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVA--SALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTD 264 (524)
Q Consensus 188 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~--~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (524)
++...++.|++++|||+..++.+.+-++|..+.|++. +.+. +++||..|++.++++++.+++.++..+|+|++..-+
T Consensus 137 p~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP 216 (448)
T COG2271 137 PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP 216 (448)
T ss_pred HHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Confidence 9999999999999999999999999999999998888 6666 669999999999999999999999999999887655
Q ss_pred CccccccCCccccCCCcccccccchhh-hhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 009816 265 TNEEDESLSPKKIGEGVTQPLLRRETK-IEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYL 343 (524)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 343 (524)
+.++-..+..+.+.+ +++.+ ......-++.+++||.+|.++++.++.+..-+++..|.|.|+.+. +|+
T Consensus 217 ~ie~~~~d~~e~~~~-------~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~----k~~ 285 (448)
T COG2271 217 PIEEYRGDPLEIYEE-------EKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV----KGF 285 (448)
T ss_pred CHHHhhcCchhhhhh-------hccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh----cCC
Confidence 433222111111000 00001 122334567789999999999999999999999999999999998 899
Q ss_pred ChhhhhhHHHHHHHHHHhhhHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhH
Q 009816 344 SSEMAGNLSTLFDVGGVLGGILAGHISDRL--DARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYA 421 (524)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (524)
|...++...+.+-+++++|.+++|+++||+ |||....+.+.+.....++.....+..+.+...++++..|+...+..-
T Consensus 286 s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqm 365 (448)
T COG2271 286 SLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQM 365 (448)
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999997 677777666666665555555555556678888889999999888886
Q ss_pred HHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhh-hhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 422 LITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSV-GAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRLVVAE 499 (524)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (524)
.+.....+..| ++..|++.|+...++++ |.+.+....|++.|. ||...|++..+.++++.++.....+.+
T Consensus 366 LiGl~a~e~~p--------K~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~~ 437 (448)
T COG2271 366 LIGLAAAEFVP--------KKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWNAE 437 (448)
T ss_pred HHHHHHhcccc--------HhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666666655 58889999999999999 999999999999998 999999999888888877766555443
Q ss_pred h
Q 009816 500 V 500 (524)
Q Consensus 500 ~ 500 (524)
.
T Consensus 438 ~ 438 (448)
T COG2271 438 E 438 (448)
T ss_pred c
Confidence 3
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=333.62 Aligned_cols=414 Identities=23% Similarity=0.290 Sum_probs=310.3
Q ss_pred cccccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCch
Q 009816 30 LSFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGT 109 (524)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 109 (524)
+...+..+.++.+.+++++..+++|.+++++.|.+.+| +|++.
T Consensus 21 ~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~------------------------------~~~s~------- 63 (467)
T PRK09556 21 KMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMIST------------------------------YGLST------- 63 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHh------------------------------cCCCH-------
Confidence 34556688889999999999999999999999999998 88887
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
++.|++.+++.+++.++++++|+++||+|||+++..+.++++++.++.++......++++.+++.|+++|++.+...|..
T Consensus 64 ~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 143 (467)
T PRK09556 64 TELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCS 143 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHH
Confidence 99999999999999999999999999999999999888888777766654211112799999999999999999999999
Q ss_pred HHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh-c---CchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT-Y---GWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDT 265 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~---gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (524)
.+++++|+|+++|++++|+...+.++|.++++++..++.. + +||..|.+.+++.++.+++.+++.++.|++....+
T Consensus 144 ~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~ 223 (467)
T PRK09556 144 YSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGK 223 (467)
T ss_pred HHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCC
Confidence 9999999999999999999999999999999988876653 2 69999999888888877777777777766543222
Q ss_pred ccccccCCccccCCCcccccccchhhhhhhhhh-HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 009816 266 NEEDESLSPKKIGEGVTQPLLRRETKIEEKAVG-FIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLS 344 (524)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 344 (524)
.++. ... ...++ +. ..+.+....... .+..+++|.+|...+..++.....++...|+|.|+++. +|++
T Consensus 224 ~~~~-~~~--~~~~~--~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~----~g~s 292 (467)
T PRK09556 224 AEEI-FGE--PISEE--DK--ETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQE----LGFS 292 (467)
T ss_pred hhhc-ccC--ccchh--hh--ccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCCC
Confidence 1110 000 00000 00 000000000111 22368899999998888888888888889999999887 8999
Q ss_pred hhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHH
Q 009816 345 SEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALIT 424 (524)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (524)
..++++......++.+++.++.|+++||+++|+.+........+...++.. ....+.....+..++.|++..+......
T Consensus 293 ~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 371 (467)
T PRK09556 293 KEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY-QHATSEYMYLASLFALGFLVFGPQLLIG 371 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999988765544333332222221 1123344444555566654433333333
Q ss_pred HHHHhhhcccccCCCCccchhHHHHHHHhhhhh-hhhhhhhhhHhhcc------------c-ChhHHHHHHHHHHHHHHH
Q 009816 425 TAVSADLGTHSSLKGNSRALATVTAIIDGTGSV-GAAIGPLLTGYISA------------T-SWTAVFTMLMAAALISGL 490 (524)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~------------~-~~~~~~~~~~~~~~~~~~ 490 (524)
....+..| ++.+|++.|+.+...++ |++++|.+.|++.| . +|+..|.+..++.+++.+
T Consensus 372 ~~~~~~~p--------~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~ 443 (467)
T PRK09556 372 VAAVGFVP--------KKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCIC 443 (467)
T ss_pred HHHHhhcc--------hhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHH
Confidence 44556665 47789999999999997 77999999999999 4 799999988887777766
Q ss_pred HHHHHHHHHh
Q 009816 491 LLTRLVVAEV 500 (524)
Q Consensus 491 ~~~~~~~~~~ 500 (524)
....+...++
T Consensus 444 ~~~~~~~~~~ 453 (467)
T PRK09556 444 LMAIVAVMEE 453 (467)
T ss_pred HHHHHHHHHH
Confidence 6554443333
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=301.77 Aligned_cols=375 Identities=19% Similarity=0.232 Sum_probs=318.4
Q ss_pred cchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHh
Q 009816 34 NHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLG 113 (524)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 113 (524)
+..|..+..+.++.|...........++|++.+| +|+++ .+.|
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~d------------------------------l~vs~-------~~aG 51 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAAD------------------------------LGVSE-------GAAG 51 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHH------------------------------cCCCH-------HHHH
Confidence 3445556666666677777777788889999999 99998 9999
Q ss_pred HHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHH
Q 009816 114 ELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVV 193 (524)
Q Consensus 114 ~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i 193 (524)
+..|.|.+++.+++++...+.||+.||++++..+.++.++.++++++ +||+.++++|++.|+..|.+++...++.
T Consensus 52 ~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA-----p~f~~Ll~aR~~~g~a~G~f~~i~~~~a 126 (394)
T COG2814 52 QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA-----PSFAVLLLARALAGLAHGVFWSIAAALA 126 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccC
Q 009816 194 GNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESL 272 (524)
Q Consensus 194 ~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (524)
.+..|+++|++++++...+..++.++|.++|.++. .+|||++|++.++++++..+..+..+| |++....+..
T Consensus 127 ~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~----- 199 (394)
T COG2814 127 ARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPG----- 199 (394)
T ss_pred HHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCc-----
Confidence 99999999999999999999999999999999998 579999999999999999999999998 2221111100
Q ss_pred CccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHH
Q 009816 273 SPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLS 352 (524)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 352 (524)
...+..+.+|+|.++...+..++.....+..++++..++++. .|++....++++
T Consensus 200 ----------------------~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v----~g~s~~~vs~~L 253 (394)
T COG2814 200 ----------------------PLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESV----AGFSVSAVSLVL 253 (394)
T ss_pred ----------------------chhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHc----cCCCHhHHHHHH
Confidence 122346889999999999999999999999999999999998 899999999999
Q ss_pred HHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhc
Q 009816 353 TLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLG 432 (524)
Q Consensus 353 ~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 432 (524)
..++++.++|+.++|++.|| +.|+.+.....+..+..+.+... ..+.+......++.|+..............+..
T Consensus 254 l~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~--~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~- 329 (394)
T COG2814 254 LAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT--GASPALALALLFLWGFAFSPALQGLQTRLARLA- 329 (394)
T ss_pred HHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-
Confidence 99999999999999999999 88888877777776666665443 344455566666677776666555555555532
Q ss_pred ccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHH
Q 009816 433 THSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRL 495 (524)
Q Consensus 433 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
++.+..+.+++....++|..+|..++|.+.|+ |+....++.+.+.+++.++....
T Consensus 330 --------p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 330 --------PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 35668999999999999999999999999999 89988888888887776666543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=318.38 Aligned_cols=398 Identities=24% Similarity=0.403 Sum_probs=295.7
Q ss_pred ccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhH
Q 009816 33 KNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALL 112 (524)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (524)
+++++.+....+++++..++++..++...|.+.++ +|++. .+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~g~s~-------~~~ 60 (434)
T PRK11663 18 RYWRRHILITMYLGYALFYFTRKSFNAAMPEMLAD------------------------------LGLSR-------SDI 60 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHh------------------------------cCCCH-------HHH
Confidence 45667777888889999999999999999999888 88887 999
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHH
Q 009816 113 GELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAV 192 (524)
Q Consensus 113 g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 192 (524)
|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++++++ ++++.+++.|++.|++.|...+...++
T Consensus 61 g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~g~~~g~~~~~~~~~ 135 (434)
T PRK11663 61 GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS-----SSLWAFALLWVLNAFFQGWGWPVCAKL 135 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 999999999999999999999999999999999999999999999987 899999999999999999999999999
Q ss_pred HhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 009816 193 VGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDES 271 (524)
Q Consensus 193 i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (524)
+.+++|+++|++++++.+.+.++|..++|.+++.+. .+|||+.|++.+++.++..++.++.+||+|++......++.+.
T Consensus 136 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 215 (434)
T PRK11663 136 LTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH 215 (434)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc
Confidence 999999999999999999999999999999998887 6799999999888777666666667787765432111110000
Q ss_pred CCccccCCCcccccccchhhhhhhhhhH-HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhh
Q 009816 272 LSPKKIGEGVTQPLLRRETKIEEKAVGF-IEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGN 350 (524)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 350 (524)
.. ++..++ .+.+..+....+ ...+++|.++.+.+..++..........|+|.|+++. +|++..+++.
T Consensus 216 ~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~g~s~~~a~~ 283 (434)
T PRK11663 216 DA-LELAQQ-------QEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSET----LGVDLVTANS 283 (434)
T ss_pred cc-cccchh-------ccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCCHHHHHH
Confidence 00 000000 000000001111 2356788888887777777777778888999999776 7999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhh--hhhHHHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 009816 351 LSTLFDVGGVLGGILAGHISDRL--DARAITA-ASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAV 427 (524)
Q Consensus 351 ~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 427 (524)
..+...++.++++++.|++.||+ ++|+... ............+... +..+........+..|++............
T Consensus 284 ~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (434)
T PRK11663 284 AVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM-PFASYVMQAACFFTIGFFVFGPQMLIGMAA 362 (434)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc-ccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999998 3333322 2111111111111111 122222223333344443322222233344
Q ss_pred HhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHH
Q 009816 428 SADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 428 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~ 493 (524)
.+..+ ++.++++.|+.++..++|.+++|.+.|++.|. +|+..|+..+++.+++.+...
T Consensus 363 ~~~~~--------~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 363 AECSH--------KEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred Hhccc--------HhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 44444 47789999999999999999999999999997 999999988888777665544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=314.71 Aligned_cols=396 Identities=17% Similarity=0.245 Sum_probs=290.3
Q ss_pred ccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhH
Q 009816 33 KNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALL 112 (524)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (524)
++.+|.++.+++++++.+++|+.+++.+.|.+.+| +|++. .+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~------------------------------~~~s~-------~~~ 45 (412)
T TIGR02332 3 KKLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKD------------------------------LGLSA-------TMF 45 (412)
T ss_pred eeehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhh------------------------------cCCCH-------HHH
Confidence 35678899999999999999999999999999888 88887 999
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHH
Q 009816 113 GELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAV 192 (524)
Q Consensus 113 g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 192 (524)
|++.+++.+++.+++++.|+++||+|||+++..++++++++.++++++ ++++.+++.|+++|++.+...|....+
T Consensus 46 g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~ 120 (412)
T TIGR02332 46 GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA-----TGPESLYLLRILVGIAEAGFLPGILLY 120 (412)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997 899999999999999999999999999
Q ss_pred HhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh-------cCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 009816 193 VGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT-------YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDT 265 (524)
Q Consensus 193 i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-------~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (524)
+.|++|+++|++++++++.+.++|.++++.+++.+.. .|||+.|++.+++.++..++.++++||+|++.....
T Consensus 121 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~ 200 (412)
T TIGR02332 121 LTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLD 200 (412)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCC
Confidence 9999999999999999999999999999999988752 599999999988888877777888898886532111
Q ss_pred ccccccCCc--cccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 009816 266 NEEDESLSP--KKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYL 343 (524)
Q Consensus 266 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 343 (524)
+++++.... +.+....+.+....++...+....+++ +++|.+|...+..++.....+.+.+|+|.|+++. ..++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~---~~~~ 276 (412)
T TIGR02332 201 EEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLRE-IFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSF---NQGS 276 (412)
T ss_pred HHHHHHHHHHHHhccccccccccccccccccHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCC
Confidence 111110000 000000000000000000011122333 3457788777777777778888999999999873 1467
Q ss_pred ChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHH
Q 009816 344 SSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAIT-AASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYAL 422 (524)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 422 (524)
+..+++.......++.+++.++.|+++||+++|+.. ........+.. .+... ..+....+....+.+++.....+.
T Consensus 277 s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~ 353 (412)
T TIGR02332 277 SNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA--TDHNLIQLLGIIMASMGSFSAMAI 353 (412)
T ss_pred cHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh--cCCHHHHHHHHHHHHHHhhhhhhH
Confidence 888899999999999999999999999999877753 33333333222 22211 112222222222222222222122
Q ss_pred HHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHH
Q 009816 423 ITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAA 485 (524)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~ 485 (524)
......+..| ++.++++.|+.+...++|++++|.+.|.+.|. +|+..+++.+++.
T Consensus 354 ~~~~~~~~~~--------~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 354 FWTTPDQSIS--------LQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHhhcccccc--------hHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 2122222233 47789999999999999999999999999997 5888887766543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=301.87 Aligned_cols=339 Identities=15% Similarity=0.131 Sum_probs=270.2
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
+|+++ .+.|++.+.+.+++.++++++|+++||+|||+++..+.++.++++++++++ ++++.+++.|++
T Consensus 39 ~~~s~-------~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~~ 106 (390)
T PRK03545 39 FHMQT-------AQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA-----WNFTVLLISRIG 106 (390)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHH
Confidence 88887 999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCC
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPV 256 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 256 (524)
+|++.+...+...+++.|++|+++|++++++...+.++|..++|++++.+. .+|||+.|++.+++.++..+..+..+|+
T Consensus 107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 186 (390)
T PRK03545 107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPL 186 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999889999999999999999999999999999999999999999887 5799999999998887776666666665
Q ss_pred CCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009816 257 NPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHT 336 (524)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (524)
.+++++ + ...+..+.+++|.++......++.....+....+++.++++.
T Consensus 187 ~~~~~~----~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (390)
T PRK03545 187 LPSEHS----G---------------------------SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQV 235 (390)
T ss_pred CCCCCc----c---------------------------hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 432110 0 011235678888887766666665556666667788888876
Q ss_pred ccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhh
Q 009816 337 AVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFV 416 (524)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 416 (524)
+|.+..+++.+....+++.++++++.+++.||.++|+.. .+..+.......+... ..+.+..++..++.|++.
T Consensus 236 ----~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~--~~~~~~~~~~~~l~g~~~ 308 (390)
T PRK03545 236 ----AGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA--ANSEWHLSVLSIFWGIAI 308 (390)
T ss_pred ----cCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHH--hchHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999877643 3333333333322221 234455556666777776
Q ss_pred hhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHH
Q 009816 417 NGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRL 495 (524)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
....+.....+.+..| +.++++.|+.+...++|..+||.+.|++.|. +++..|...+.+.+++.+.....
T Consensus 309 ~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 309 MCIGLAMQVKVLKLAP---------DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred hcchHHHHHHHHHhCC---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554432 4568999999999999999999999999998 99999988888777766665433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=311.71 Aligned_cols=421 Identities=16% Similarity=0.179 Sum_probs=299.4
Q ss_pred cccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhh
Q 009816 32 FKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTAL 111 (524)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (524)
..+.||.+..++++++.+++.||.+++...+.+.++.+++++...... +..+. ....+++++. .+
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~s~-------~~ 77 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAE-----NELDN---IKNPNFKWSG-------AL 77 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccc-----ccccc---ccCCCCCCCH-------HH
Confidence 457889999999999999999999999999988764222111100000 00000 0011245554 99
Q ss_pred HhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHH
Q 009816 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVA 191 (524)
Q Consensus 112 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 191 (524)
.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++. ..+++.+++.|+++|++.+...+....
T Consensus 78 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~~~G~~~~~~~~~~~~ 154 (465)
T TIGR00894 78 QGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA---GGGIALVVFCRVIQGLAQGSVSPATHK 154 (465)
T ss_pred hhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH---HcCchHHHHHHHHHHHhcccchhhHHH
Confidence 99999999999999999999999999999999999999999888875430 146788999999999999999999999
Q ss_pred HHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-h-cCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 009816 192 VVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-T-YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEED 269 (524)
Q Consensus 192 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (524)
+++|++|+++|++++++...+..+|.+++|++++.+. . .|||++|++.++++++..++.+.+.+|+|+.+...+++++
T Consensus 155 ~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 234 (465)
T TIGR00894 155 IIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEK 234 (465)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHH
Confidence 9999999999999999999999999999999999887 4 3999999999988887766666667776654332221111
Q ss_pred ccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhh
Q 009816 270 ESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAG 349 (524)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 349 (524)
+..... . +++....+.+..+++.++++.+|...+..++.....+.+..|+|.|+++. +|++..+.+
T Consensus 235 ~~i~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~----~g~s~~~~g 300 (465)
T TIGR00894 235 KYINSS--L--------QGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWV----LRVSGKENG 300 (465)
T ss_pred HHHHhh--c--------ccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCcChHHhH
Confidence 100000 0 00000011223477889999999999998888888889999999999887 799999999
Q ss_pred hHHHHHHHHHHhhhHHHHHHHhhhhhhHHH--------HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhH
Q 009816 350 NLSTLFDVGGVLGGILAGHISDRLDARAIT--------AASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYA 421 (524)
Q Consensus 350 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (524)
+..++..++.+++.++.|+++||+++|+.. ..+..........+.......+....++.+.+.+.+.+...+
T Consensus 301 ~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 380 (465)
T TIGR00894 301 LLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLA 380 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999998654211 111111111111111111112333333344444444333333
Q ss_pred HHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc----ChhHHHHHHHHHHHHHHHHHH
Q 009816 422 LITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT----SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~----~~~~~~~~~~~~~~~~~~~~~ 493 (524)
.......+.. ++.+|.+.|+.+..+.+++.++|.+.|++.+. +|...|.+.+++.+++.++..
T Consensus 381 ~~~~~~~~~~---------~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 381 GVLINSLDLA---------PRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred hhhhchhhcC---------hhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 3322222222 36789999999999999999999999998765 377788887777766655444
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=303.84 Aligned_cols=411 Identities=21% Similarity=0.384 Sum_probs=292.9
Q ss_pred cccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhh
Q 009816 32 FKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTAL 111 (524)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (524)
.++++|.++...++.+...+.++..++...|.+.++ |++. .+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-------------------------------g~s~-------~~ 64 (452)
T PRK11273 23 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------------------------------GFSR-------GD 64 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-------------------------------CCCH-------HH
Confidence 455677777777888888899988888888876533 4444 88
Q ss_pred HhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHH
Q 009816 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVA 191 (524)
Q Consensus 112 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 191 (524)
.|++.+.+.+++.++++++|+++||+|||++++++.++.+++.++++++.. ...+++.+++.|++.|++.+..++....
T Consensus 65 ~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~gi~~g~~~~~~~~ 143 (452)
T PRK11273 65 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW-ATSSIAVMFVLLFLCGWFQGMGWPPCGR 143 (452)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHHHHHhccchHHHH
Confidence 999999999999999999999999999999999999999999988877410 0137888999999999999998898888
Q ss_pred HHhhccccccccceehhhhhhhhhHHH-HHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 009816 192 VVGNWFGKSKRGLIMGIWNAHTSIGNI-TGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEED 269 (524)
Q Consensus 192 ~i~~~~~~~~r~~~~~~~~~~~~~G~~-ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (524)
.+.+++|+++|+++++++..+..+|.. .+|+++..+. ..+||+.|++.+++.++..++..+++||+|++...++.++.
T Consensus 144 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 223 (452)
T PRK11273 144 TMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEY 223 (452)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhh
Confidence 999999999999999999999999864 4565543333 45999999999888888777788888887664322111110
Q ss_pred ccCCccccCCCcccccccchhhhhhhhhh-HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhh
Q 009816 270 ESLSPKKIGEGVTQPLLRRETKIEEKAVG-FIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMA 348 (524)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 348 (524)
+... .++.+. +++++ .+.... ....+++|.+|...+..++.....+....++|.|+++. +|++..++
T Consensus 224 ~~~~-~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~----~g~s~~~~ 291 (452)
T PRK11273 224 KNDY-PDDYNE------KHEQE-LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV----KHFALDKS 291 (452)
T ss_pred hhcc-cccccc------ccCCC-ccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHH
Confidence 0000 000000 00000 000111 23467889999888888888777788889999999987 68999999
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHhhh--hhhHHHHH-HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHH
Q 009816 349 GNLSTLFDVGGVLGGILAGHISDRL--DARAITAA-SFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITT 425 (524)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (524)
+.......++.+++.++.|+++||+ +||+.... ...+..+....+.. ....+.+..++..++.|.+..........
T Consensus 292 ~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 370 (452)
T PRK11273 292 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWL-NPAGNPTVDMACMIVIGFLIYGPVMLIGL 370 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHH-hcccChHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9988888999999999999999999 44443222 22222222222211 11223333334444455543333333334
Q ss_pred HHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhh-hhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009816 426 AVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAI-GPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRLVVAEVAA 502 (524)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i-~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (524)
...+..| ++.+|++.|+.+....+|+.+ +|.+.|++.|. ||+..|.+++++++++.+......+.|+|+
T Consensus 371 ~~~~~~p--------~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 441 (452)
T PRK11273 371 HALELAP--------KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRH 441 (452)
T ss_pred HHHHHcC--------hhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 4556665 367899999999988888765 79999999998 999999988888887777666565555444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=298.78 Aligned_cols=378 Identities=21% Similarity=0.287 Sum_probs=293.4
Q ss_pred cchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHh
Q 009816 34 NHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLG 113 (524)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 113 (524)
+++|.++.++++..+.++++...++...|.+.++ +|+++ .+.|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~s~-------~~~g 53 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQE------------------------------FGLDV-------AQMG 53 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------hCCCH-------HHHH
Confidence 5888899999999999999999999999999888 88777 9999
Q ss_pred HHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHH
Q 009816 114 ELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVV 193 (524)
Q Consensus 114 ~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i 193 (524)
++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.+...+...+++
T Consensus 54 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~~~~~~~~~~~~ 128 (406)
T PRK11551 54 WAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA-----WDFPSLLVARLLTGVGLGGALPNLIALT 128 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888886 8999999999999999999999999999
Q ss_pred hhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccC
Q 009816 194 GNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESL 272 (524)
Q Consensus 194 ~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (524)
.|++|+++|++++++...+..+|..+++.+++.+. ..+||+.|++.+++.++..++..+++||+|++...++.++
T Consensus 129 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---- 204 (406)
T PRK11551 129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK---- 204 (406)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch----
Confidence 99999999999999999999999999999988776 5799999999887777666666677787654321110000
Q ss_pred CccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHH
Q 009816 273 SPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLS 352 (524)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 352 (524)
..+ + ......+..+.+..+......++.....+....++|.|+++ .|+++.+.+...
T Consensus 205 ----~~~----~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~g~s~~~~~~~~ 261 (406)
T PRK11551 205 ----QRA----P----------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-----QGLSRSQAGLVQ 261 (406)
T ss_pred ----hhh----h----------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCChhhhhHHH
Confidence 000 0 00000000111222333344444445566677889999987 499999999999
Q ss_pred HHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhc
Q 009816 353 TLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLG 432 (524)
Q Consensus 353 ~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 432 (524)
....++.++++++.|++.||+++|+.+..+.....++.+.+.. ..+.+...+..++.|++..+..+.......+.+|
T Consensus 262 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p 338 (406)
T PRK11551 262 IAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA---APSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYP 338 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 9999999999999999999999999887755555444433322 2244444555666777777777777788888877
Q ss_pred ccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHHHHHHH
Q 009816 433 THSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAALISGLL 491 (524)
Q Consensus 433 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~ 491 (524)
+ +.++++.|+.+....+|..++|.+.|++.+. ++...++....+.+++.+.
T Consensus 339 ~--------~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
T PRK11551 339 T--------QVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALA 391 (406)
T ss_pred h--------hhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence 4 6679999999999999999999999999987 4555555554444444333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=303.23 Aligned_cols=389 Identities=16% Similarity=0.147 Sum_probs=270.2
Q ss_pred hhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhH--
Q 009816 37 AIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGE-- 114 (524)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~-- 114 (524)
+.++...+++++..++|...++.+.|.+.++ ++.+. +......+.
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~------------------------------~~~~~---~~~~~~~~~~~ 61 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKV------------------------------FFPGA---DPSVQMIAALA 61 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------------hCCCC---CcHHHHHHHHH
Confidence 4566777889999999999999999988877 43221 110111222
Q ss_pred HHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHH--------HHHHHHHHHHhhhcch
Q 009816 115 LDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYY--------YLVVQMLAGLFQSTGW 186 (524)
Q Consensus 115 ~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~r~l~G~~~~~~~ 186 (524)
+.++.++++.++++++|+++||+|||+++.++++++++++++++++ +++.. +++.|+++|++.|..+
T Consensus 62 ~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~-----~~~~~~g~~a~~~l~~~R~l~G~g~g~~~ 136 (490)
T PRK10642 62 TFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLI-----PSYATIGIWAPILLLLCKMAQGFSVGGEY 136 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHhHhHhhH
Confidence 2578889999999999999999999999999999999999999997 78764 8899999999999999
Q ss_pred hhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh---------hcCchhHHHHhHHHHHHHHHHHHHhcCCC
Q 009816 187 PSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL---------TYGWGWSFVVPGLIIAFVGLIVFLFLPVN 257 (524)
Q Consensus 187 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~---------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~ 257 (524)
+...+++.|++|+++|+++.++...+..+|..+|+.+...+. ++|||++|++.+++.++ +++....+||+
T Consensus 137 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~es 215 (490)
T PRK10642 137 TGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEET 215 (490)
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCC
Confidence 999999999999999999999999888888888876654432 47999999997655543 45556678887
Q ss_pred CCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcC-CCcHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 009816 258 PESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKI-PGVAPFA-LCLFFAKLVAYTFLYWLPFYVSH 335 (524)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 335 (524)
|++....++.++... + .. . +++..++++++++ ++.+... ...++....++....++|.|+++
T Consensus 216 p~~~~~~~~~~~~~~----~--~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~ 279 (490)
T PRK10642 216 PAFQQHVDKLEQGDR----E--GL-----Q-----DGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSH 279 (490)
T ss_pred hhHHHHHHhhhhhcc----c--cc-----c-----ccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764321110000000 0 00 0 0011123333332 2222222 22334456677788899999987
Q ss_pred cccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhh
Q 009816 336 TAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMF 415 (524)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (524)
. +|++..+.++......++.+++.++.|+++||+|||+.+..+.....+....+.......+....++..++.+++
T Consensus 280 ~----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 355 (490)
T PRK10642 280 N----LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVI 355 (490)
T ss_pred h----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 6 789888888887888888999999999999999999987776654433322222111223334444455556666
Q ss_pred hhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHHHHHHHH
Q 009816 416 VNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~ 492 (524)
.+...+.......+.+| ++.|+++.|+......+++.++|.+.+++.+. ++...+++..+.++++.+..
T Consensus 356 ~~~~~g~~~~~~~~~~p--------~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (490)
T PRK10642 356 LNCFTGVMASTLPAMFP--------THIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG 426 (490)
T ss_pred HHHHHHHHHHHHHHHCC--------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 55555666666777776 46789999976666777788999999998875 35555555544444444433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=287.07 Aligned_cols=390 Identities=13% Similarity=0.045 Sum_probs=294.9
Q ss_pred cccchhhHHHHHHHHHHHHHhhcccccccccccCC-CCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchh
Q 009816 32 FKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDP-QSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTA 110 (524)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 110 (524)
-++..++.+.+.++++++.+..+..++++.+.+.+ + +|+++ +
T Consensus 28 ~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~------------------------------~~ls~-------~ 70 (462)
T PRK15034 28 GKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIG------------------------------FNFTT-------D 70 (462)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------------------------------cCCCH-------H
Confidence 34455678888999999999999999999888766 6 88887 9
Q ss_pred hHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHH
Q 009816 111 LLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVV 190 (524)
Q Consensus 111 ~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 190 (524)
|.+++.+++.+++.++.++.|++.||+|.|+++.++.++.++.+++.+++..+..++++.+++.|++.|++ +..++...
T Consensus 71 q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~ 149 (462)
T PRK15034 71 QLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSM 149 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHH
Confidence 99999999999999999999999999999999999999999999988874111126999999999999998 66889999
Q ss_pred HHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-------------------hcCchhHHHHhHHHHHHHHHHHH
Q 009816 191 AVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-------------------TYGWGWSFVVPGLIIAFVGLIVF 251 (524)
Q Consensus 191 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-------------------~~gwr~~f~~~~~~~~~~~~~~~ 251 (524)
..+++|+|+++||+++|+.....++|..+++++...+. ..+||.++++..++.++.+++.+
T Consensus 150 ~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~ 229 (462)
T PRK15034 150 GNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAW 229 (462)
T ss_pred HHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997777777766655543322 12377888888887777777777
Q ss_pred HhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 252 LFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPF 331 (524)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (524)
+++++.++.+. .....+..+|+|+.|.+.+.+++.+..+.++..++|.
T Consensus 230 ~~~~~~~~~~~--------------------------------~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~ 277 (462)
T PRK15034 230 SGMNDIASSRA--------------------------------SIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAM 277 (462)
T ss_pred HhCCCcccccc--------------------------------CHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 76555332100 1223467899999999999999998888889999999
Q ss_pred HHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcc---hhHHHHHHH
Q 009816 332 YVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGH---LSLALNIAL 408 (524)
Q Consensus 332 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 408 (524)
|+++. + +.........+..+...+.++++|+++||+|+++.+.++++.+.+.........+. .+.+...+.
T Consensus 278 ~~~~~----~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~ 351 (462)
T PRK15034 278 LAKTQ----F--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAV 351 (462)
T ss_pred HHHHH----c--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 99875 3 33333233344567788889999999999999999988887666665443332222 234444444
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhhccc-------------ccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--C
Q 009816 409 MFITGMFVNGPYALITTAVSADLGTH-------------SSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--S 473 (524)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~ 473 (524)
++...++.+.......-.+++.+++. ++....++..|.+.|+....+.+|+.+-|.+.|...+. +
T Consensus 352 ~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~ 431 (462)
T PRK15034 352 FMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGS 431 (462)
T ss_pred HHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCC
Confidence 44444455555555555666655520 01111123678999999999999999999999988877 7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 009816 474 WTAVFTMLMAAALISGLLLTRLVV 497 (524)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
+...|+...+..+++.++.+..+.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 432 PVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888899988888888777765543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=303.05 Aligned_cols=382 Identities=18% Similarity=0.190 Sum_probs=303.3
Q ss_pred chhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhH
Q 009816 35 HQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGE 114 (524)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 114 (524)
++|.++..++++++....|.+.+++..|.+.+| +|.+. .+.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~------------------------------l~~s~-------~~~~~ 45 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMT------------------------------LGASG-------NELLW 45 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------hCCCH-------hHHHH
Confidence 367888999999999999999999999999988 88777 89999
Q ss_pred HHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHh
Q 009816 115 LDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVG 194 (524)
Q Consensus 115 ~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~ 194 (524)
+.+.|.+++.++.+++|+++||+|||++++.+.+++++++++++++ ++++.++++|+++|++.+...+.....+.
T Consensus 46 ~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a-----~~~~~li~~r~l~G~g~~~~~~~~~~~l~ 120 (495)
T PRK14995 46 IIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS-----PTASWLIATRALLAIGAAMIVPATLAGIR 120 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997 99999999999999999999898888887
Q ss_pred hcc-ccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccC
Q 009816 195 NWF-GKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESL 272 (524)
Q Consensus 195 ~~~-~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (524)
+++ |+++|+++++++.....+|..+||.+++++. ++||||.|++...+.++..++..+++|+.+++..+ +.+.....
T Consensus 121 ~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~-~~d~~g~~ 199 (495)
T PRK14995 121 ATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQ-PLNLGHAL 199 (495)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CCChHhHH
Confidence 776 6789999999999999999999999999998 57999999998888887777777778875533211 11100000
Q ss_pred ------------CccccCCCcccc---------------cccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 009816 273 ------------SPKKIGEGVTQP---------------LLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTF 325 (524)
Q Consensus 273 ------------~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (524)
..+......... ....+.+ .+.+....+++|+|.++...+..++.....++.
T Consensus 200 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~-~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~ 278 (495)
T PRK14995 200 MLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLA-ASRPMIDMRLFTHRIILSGVVMAMTAMITLVGF 278 (495)
T ss_pred HHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHH
Confidence 000000000000 0000111 111222246789999888888888877778888
Q ss_pred HHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 009816 326 LYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALN 405 (524)
Q Consensus 326 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (524)
..++|.|++.. +|+++.++|+......++..++.++.|++.||+++|+.+..+..+..++...+.......+.+..
T Consensus 279 ~~~~~~~lq~v----~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 354 (495)
T PRK14995 279 ELLMAQELQFV----HGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQA 354 (495)
T ss_pred HHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 88999999998 89999999999999999999999999999999999988877776666555444332223344445
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 406 IALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 406 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
....++.|++.+...+.......+..| ++.++.+.++.++...+|+.+|+.+.|.+.+.
T Consensus 355 ~~~~~l~G~g~g~~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 355 WGLMALLGFSAASALLASTSAIMAAAP--------PEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCC--------HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888777777777776 36679999999999999999999999988654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=297.04 Aligned_cols=395 Identities=15% Similarity=0.152 Sum_probs=293.6
Q ss_pred cccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhh
Q 009816 32 FKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTAL 111 (524)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (524)
...++|.++..+++....++.++..++...|.+.++ +|++. .+
T Consensus 13 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------------------------~g~s~-------~~ 55 (455)
T TIGR00892 13 DGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQI------------------------------FQATY-------SE 55 (455)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHH------------------------------hCcch-------hH
Confidence 346689888888888888888888889999999888 88887 89
Q ss_pred HhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHH-HHHHHHHhhhcchhhHH
Q 009816 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLV-VQMLAGLFQSTGWPSVV 190 (524)
Q Consensus 112 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~r~l~G~~~~~~~~~~~ 190 (524)
.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.++++++ ++++.+++ .|++.|++.+...+...
T Consensus 56 ~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~l~G~~~~~~~~~~~ 130 (455)
T TIGR00892 56 TAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS-----SNVIELYLTAGFITGLGLAFNFQPSL 130 (455)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHhcchhhhhHHH
Confidence 9999999999999999999999999999999999999999999999887 88888765 57999999987777778
Q ss_pred HHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 009816 191 AVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEED 269 (524)
Q Consensus 191 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (524)
+++.++++ ++|+++.++...+..+|..++|++++.+. .+|||++|++.+++.++..+..++..++.+..+..+.++++
T Consensus 131 ~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 209 (455)
T TIGR00892 131 TMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKE 209 (455)
T ss_pred HHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccc
Confidence 88999996 78999999999999999999999998887 57999999999988776655444443332211100000000
Q ss_pred ccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhh
Q 009816 270 ESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAG 349 (524)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 349 (524)
.. . .... .++...+...+ +.......+.+++|.++......++.....+....++|.|+++ .|++..+++
T Consensus 210 ~~-~--~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-----~g~s~~~~g 279 (455)
T TIGR00892 210 GL-P--PDGS-TKKLSKKSTAE-KINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-----KGVDEYEAA 279 (455)
T ss_pred cC-C--CCCc-cccccccchhh-hhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-----cCCCHHHHH
Confidence 00 0 0000 00000000000 0001111357788988888777777777777778899999877 499999999
Q ss_pred hHHHHHHHHHHhhhHHHHHHHhhh--hhhHHHHHHH--HHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHH
Q 009816 350 NLSTLFDVGGVLGGILAGHISDRL--DARAITAASF--MYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITT 425 (524)
Q Consensus 350 ~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (524)
.+.++.+++.++++++.|++.||. ++++...+.. ....+..+... ...+.+..++..++.|++.+...+....
T Consensus 280 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~---~~~~~~~~~i~~~~~G~~~g~~~~~~~~ 356 (455)
T TIGR00892 280 FLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA---LAGDYTGLVIYCIFFGLSFGSVGALLFE 356 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH---HhchHHHHHHHHHHHHHHhchHHHHHHH
Confidence 999999999999999999999973 3343333222 22222222221 1234555666777888888888888888
Q ss_pred HHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHHHHHH
Q 009816 426 AVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAALISGL 490 (524)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~ 490 (524)
.+.+.+++ +.++++.|+.+....+|..++|.+.|.+.|. +|+..|++.+++.+++.+
T Consensus 357 ~~~~~~~~--------~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 357 VLMDLVGA--------QRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHhhH--------HHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 88887773 6679999999999999999999999999987 588888888777665544
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=295.51 Aligned_cols=380 Identities=13% Similarity=0.066 Sum_probs=263.7
Q ss_pred cchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhH-
Q 009816 34 NHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALL- 112 (524)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~- 112 (524)
++++..+...+++++.+++|+..++.+.|.+.++ ++.+. . +..+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~------------------------------~~~~~--~--~~~~~~ 63 (432)
T PRK10406 18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHI------------------------------FFPSG--N--TTTQLL 63 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------hCCCC--C--chHHHH
Confidence 4566677777889999999999999999998888 43211 0 11433
Q ss_pred --hHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhH--------HHHHHHHHHHHHhh
Q 009816 113 --GELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSF--------YYYLVVQMLAGLFQ 182 (524)
Q Consensus 113 --g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~~~~r~l~G~~~ 182 (524)
+.+.+...++..++++++|+++||+|||+++..+.+++++++++++++ +++ ..+++.|+++|++.
T Consensus 64 ~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~R~l~G~g~ 138 (432)
T PRK10406 64 QTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL-----PGYETIGTWAPALLLLARLFQGLSV 138 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc-----CCchhHHHHHHHHHHHHHHHHHhhh
Confidence 334455555666999999999999999999999999999999999987 554 46899999999999
Q ss_pred hcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh---------hcCchhHHHHhHHHHHHHHHHHHHh
Q 009816 183 STGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL---------TYGWGWSFVVPGLIIAFVGLIVFLF 253 (524)
Q Consensus 183 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~---------~~gwr~~f~~~~~~~~~~~~~~~~~ 253 (524)
|..++...+++.|++|+++|+++.++.+.+...|.++++.+...+. .+|||++|++.+++.++. +.....
T Consensus 139 g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~ 217 (432)
T PRK10406 139 GGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQ 217 (432)
T ss_pred hhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhc
Confidence 9999999999999999999999999998888888888887665543 479999999877766544 334444
Q ss_pred cCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHH-HHHHHHHHHHHHHH
Q 009816 254 LPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFA-KLVAYTFLYWLPFY 332 (524)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 332 (524)
+||+++++.+ . . ++..++++++++++.+...+...+. ...++....|+|.|
T Consensus 218 ~~e~~~~~~~------~--~--------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ 269 (432)
T PRK10406 218 LDETSQQETR------A--L--------------------KEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKY 269 (432)
T ss_pred CCCCchHHHh------h--h--------------------cccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554332100 0 0 0011345667777776665554443 56677788999999
Q ss_pred HhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHH
Q 009816 333 VSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYR-SYGHLSLALNIALMFI 411 (524)
Q Consensus 333 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 411 (524)
+++. +|++..+.+....+..+...++.++.|+++||++||+.+.....+..+....+.. .....+....+....+
T Consensus 270 l~~~----~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (432)
T PRK10406 270 LVNT----AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMC 345 (432)
T ss_pred HHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9876 7999988888888888888888999999999999998876655543333222211 1111222222222222
Q ss_pred HHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhh-hhhhhhhhhHhhcccC-hhHHHHHHHHHHHHHH
Q 009816 412 TGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSV-GAAIGPLLTGYISATS-WTAVFTMLMAAALISG 489 (524)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 489 (524)
..+..+...+.......+.+|+ +.|+++.|+.+...++ .+...|.+.+.+.+.+ +...+++.++..+++.
T Consensus 346 ~~~~~~~~~~~~~~~~~e~fp~--------~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~ 417 (432)
T PRK10406 346 ALLIVSFYTSISGILKAEMFPA--------QVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAF 417 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC--------CccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 2222233334455666777774 6789999998877664 3555778777664443 5555555555555544
Q ss_pred HHHH
Q 009816 490 LLLT 493 (524)
Q Consensus 490 ~~~~ 493 (524)
+..+
T Consensus 418 ~~~~ 421 (432)
T PRK10406 418 LVSL 421 (432)
T ss_pred HHHH
Confidence 4433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=298.09 Aligned_cols=386 Identities=16% Similarity=0.148 Sum_probs=274.8
Q ss_pred cccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhh
Q 009816 32 FKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTAL 111 (524)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (524)
.++++++.+...+.+++..+.+...+++..|.+.++ +|++. ++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------------------~gls~-------~~ 72 (476)
T PLN00028 30 FARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDN------------------------------LNLTK-------SD 72 (476)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------cCCCH-------HH
Confidence 344456666777777788888888888888888888 88877 89
Q ss_pred HhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHH
Q 009816 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVA 191 (524)
Q Consensus 112 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 191 (524)
.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++ ++++.+++.|++.|++.+.. +....
T Consensus 73 ~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~s~~~l~~~r~l~G~~~~~~-~~~~~ 146 (476)
T PLN00028 73 IGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-----SSATGFIAVRFFIGFSLATF-VSCQY 146 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHhh-HHHHH
Confidence 9999999999999999999999999999999999999999999989886 89999999999999998765 44567
Q ss_pred HHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh----h------cCchhHHHHhHHHHHHHHHHHHHhcCCCCCCC
Q 009816 192 VVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL----T------YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESV 261 (524)
Q Consensus 192 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~----~------~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (524)
++++++|+++|++++++.....++|..+++.+...+. . .|||+.|++.+++.++..++.+++.++.|+..
T Consensus 147 ~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~ 226 (476)
T PLN00028 147 WMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGN 226 (476)
T ss_pred HHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCc
Confidence 8999999999999999998777777777765554432 1 48999999999988877666655544433321
Q ss_pred CCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009816 262 GTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGK 341 (524)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (524)
. ++.. ++.+. +..+....+++.++++++|.+.+..++..........++|.|+.+. +
T Consensus 227 ~----~~~~-----~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~ 283 (476)
T PLN00028 227 Y----RELK-----KSGTM----------PKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDR----F 283 (476)
T ss_pred h----hhHH-----hcCcc----------ccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh----c
Confidence 0 0000 00000 0001123356678889988877776666666667778899998876 7
Q ss_pred CCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhH-----H-H-HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Q 009816 342 YLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARA-----I-T-AASFMYCAIPALFFYRSYGHLSLALNIALMFITGM 414 (524)
Q Consensus 342 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~-----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 414 (524)
|+++.+++.+.++.+++.++++++.|+++||+++|+ . . .....+..+..+.+ ....+.+..++..++.++
T Consensus 284 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~---~~~~~~~~~~~~~~l~~~ 360 (476)
T PLN00028 284 GLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWL---GRANSLGAAIVVMILFSI 360 (476)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998752 1 1 11111111111111 112233333444445555
Q ss_pred hhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHH
Q 009816 415 FVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~ 493 (524)
+.+...+.......+ +. ++.+|++.|+.+..+.+|+.++|.+.+ ..+. +|+..|++.+++.+++.++.+
T Consensus 361 ~~~~~~~~~~~~~~~-~~--------~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~ 430 (476)
T PLN00028 361 FVQAACGATFGIVPF-VS--------RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVA 430 (476)
T ss_pred HHHHhhhhhcccCcc-cC--------hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHH
Confidence 544444333333332 22 367799999988877788877777655 2233 689999999888887777666
Q ss_pred HHH
Q 009816 494 RLV 496 (524)
Q Consensus 494 ~~~ 496 (524)
+.+
T Consensus 431 ~~~ 433 (476)
T PLN00028 431 FIH 433 (476)
T ss_pred hee
Confidence 554
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=309.56 Aligned_cols=414 Identities=18% Similarity=0.215 Sum_probs=302.6
Q ss_pred ccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhH
Q 009816 33 KNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALL 112 (524)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (524)
.+.+|.++++++++++...++...++.++|.+..+ +|++. .+.
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~------------------------------~gls~-------~~~ 204 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKD------------------------------LCIPD-------SGK 204 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------hCCCH-------HHH
Confidence 56788888888999999999999999999998888 78777 899
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHH
Q 009816 113 GELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAV 192 (524)
Q Consensus 113 g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 192 (524)
+++.+++.++++++++++|+++||+|||+++++++++.+++.++++++ ++++.++++|++.|++.+...+...++
T Consensus 205 g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa-----~s~~~llv~R~l~G~g~g~~~p~~~~~ 279 (742)
T TIGR01299 205 GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV-----QGYGFFLFCRLLSGFGIGGAIPIVFSY 279 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 899999999999999999999999999
Q ss_pred HhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-h-------------cCchhHHHHhHHHHHHHHHHHHHhcCCCC
Q 009816 193 VGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-T-------------YGWGWSFVVPGLIIAFVGLIVFLFLPVNP 258 (524)
Q Consensus 193 i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~-------------~gwr~~f~~~~~~~~~~~~~~~~~~~~~~ 258 (524)
+.|++|+++|++.++++..+..+|.++++.++..+. . .+||+.|++.++..+ ..++.++++||+|
T Consensus 280 isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~l-l~ll~~~~lPESP 358 (742)
T TIGR01299 280 FAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCV-FAIGALTFMPESP 358 (742)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHH-HHHHHHHHcCCCH
Confidence 999999999999999999999999999998876654 2 258998888666544 4466778899999
Q ss_pred CCCCCCCccccccCCcc-------ccC-CCc-------------ccccccchhhh---------h------hhhhhHHHH
Q 009816 259 ESVGTDTNEEDESLSPK-------KIG-EGV-------------TQPLLRRETKI---------E------EKAVGFIEA 302 (524)
Q Consensus 259 ~~~~~~~~~~~~~~~~~-------~~~-~~~-------------~~~~~~~~~~~---------~------~~~~~~~~~ 302 (524)
++...+.+.++.....+ +.. .+. ..+..+.+... . .....++++
T Consensus 359 rwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 438 (742)
T TIGR01299 359 RFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRC 438 (742)
T ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHH
Confidence 87544332222111000 000 000 00000000000 0 001123444
Q ss_pred hcCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-------------------------------C------C
Q 009816 303 WKIPG---VAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDG-------------------------------K------Y 342 (524)
Q Consensus 303 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~------g 342 (524)
++.+. .+.+.+..++..+.++++..|+|.++.+..... + |
T Consensus 439 f~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (742)
T TIGR01299 439 FNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIG 518 (742)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhc
Confidence 43322 244555667777889999999998754410000 0 0
Q ss_pred C----------------------------------------------------------------C---------hhhhh
Q 009816 343 L----------------------------------------------------------------S---------SEMAG 349 (524)
Q Consensus 343 ~----------------------------------------------------------------~---------~~~~~ 349 (524)
+ + .....
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 598 (742)
T TIGR01299 519 LKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIY 598 (742)
T ss_pred ccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHH
Confidence 0 0 00112
Q ss_pred hHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 009816 350 NLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSA 429 (524)
Q Consensus 350 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (524)
....+.+++.+++.++.|+++||+|||+++..+.++.+++.+++... .+....++..++.+++.++.++....++++
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~---~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE 675 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG---NSESAMIALLCLFGGLSIAAWNALDVLTVE 675 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556678899999999999999999999988888777776665432 233344555566777777788888888899
Q ss_pred hhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009816 430 DLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVVAEVAA 502 (524)
Q Consensus 430 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (524)
.+|+ +.|++++|+.+....+|.+++|++.+.+.+.+...+|++.+++.++++++...+ +|+++
T Consensus 676 l~Pt--------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~L--PET~~ 738 (742)
T TIGR01299 676 LYPS--------DKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKL--PDTRG 738 (742)
T ss_pred HcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhC--CCCcc
Confidence 8885 678999999999999999999999998877666667777777666655544432 45443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=293.88 Aligned_cols=388 Identities=24% Similarity=0.351 Sum_probs=295.0
Q ss_pred HHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHHHHHHHh
Q 009816 46 AYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYAG 125 (524)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~~l~~~~ 125 (524)
+++.+++++..++...|.+.++ +|+++ .+.|++.+++.++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~------------------------------~g~s~-------~~~~~~~~~~~~~~~~ 44 (399)
T TIGR00893 2 VTVINYLDRANLSFAAPMLQED------------------------------LGLSA-------AQYGYVFSAFSWGYVV 44 (399)
T ss_pred eehHHHHHHHhhhHhHHHHHHh------------------------------hCCCh-------hhHHHHHHHHHHHHHH
Confidence 3567788889999999998888 88877 8999999999999999
Q ss_pred hhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhccccccccce
Q 009816 126 GMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLI 205 (524)
Q Consensus 126 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 205 (524)
+.+++|+++||+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|+++
T Consensus 45 ~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 119 (399)
T TIGR00893 45 GQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-----GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA 119 (399)
T ss_pred HHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred ehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcccc
Q 009816 206 MGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQP 284 (524)
Q Consensus 206 ~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (524)
+++......+|.+++|.+++.+. +.+||+.|++.+++.++..++.++..||++++.....++++.... +....+
T Consensus 120 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---- 194 (399)
T TIGR00893 120 VSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVV-GGLLAE---- 194 (399)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcc-hhhccc----
Confidence 99999999999999999999876 679999999988888777666666677665433221111111000 000000
Q ss_pred cccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhH
Q 009816 285 LLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGI 364 (524)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 364 (524)
.+.+++.++.....++.+++|+++...+..++..........+.|.|+++. +|.++.+.+.+.....++.+++.+
T Consensus 195 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 269 (399)
T TIGR00893 195 -QQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQE----RGLSILEAGFMASLPGIVGFIGMI 269 (399)
T ss_pred -cccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----hcccHHHhhHHHHHHHHHHHHHHH
Confidence 001111112334566788899998888888888888888899999999887 799999999999999999999999
Q ss_pred HHHHHHhhhhhhHH--HHHHHHHHH--HHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCC
Q 009816 365 LAGHISDRLDARAI--TAASFMYCA--IPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGN 440 (524)
Q Consensus 365 ~~g~l~dr~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (524)
+.|++.||+++|+. ......... +...+........+...........+.+..+..+.......+..|
T Consensus 270 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 341 (399)
T TIGR00893 270 LGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAP-------- 341 (399)
T ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcC--------
Confidence 99999999999862 111111111 111111111111112222333333344434467777778888777
Q ss_pred ccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-C-hhHHHHHHHHHHHHHHHHHH
Q 009816 441 SRALATVTAIIDGTGSVGAAIGPLLTGYISAT-S-WTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 441 ~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-~~~~~~~~~~~~~~~~~~~~ 493 (524)
++.++++.|+.+.+..+|..++|.+.|++.|. + ++..+.+.+++.+++.+...
T Consensus 342 ~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 342 GNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999998 6 88888888777766655443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=286.92 Aligned_cols=378 Identities=17% Similarity=0.174 Sum_probs=290.7
Q ss_pred cchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHh
Q 009816 34 NHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLG 113 (524)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 113 (524)
..|+++....+++++....+...++...|.+.++ +|+++ ++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~------------------------------~~~s~-------~~~g 45 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEY------------------------------FNLPV-------SSMS 45 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH------------------------------hCCCH-------HHHH
Confidence 3456667777888888888889999999999888 88887 9999
Q ss_pred HHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHH
Q 009816 114 ELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVV 193 (524)
Q Consensus 114 ~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i 193 (524)
++.+.+.+++.++++++|++.||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+...+...+++
T Consensus 46 ~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~l~G~~~g~~~~~~~~~i 120 (394)
T PRK03699 46 NTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS-----HSLALFSIAMFVLGVVSGITMSIGTFLI 120 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-----chHHHHHHHHHHHHHhhHhhccchhHHh
Confidence 99999999999999999999999999999999999999999999986 8999999999999999998889999999
Q ss_pred hhccccccccceehhhhhhhhhHHHHHHHHHHHhh--hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 009816 194 GNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL--TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDES 271 (524)
Q Consensus 194 ~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~--~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (524)
.|++|+++|+++++.......+|..++|.+.+.+. ..|||+.|.+.+++.++..++.++ .+.|+..+.++ +
T Consensus 121 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~~--~--- 193 (394)
T PRK03699 121 THVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF--SEFPALGKHAP--K--- 193 (394)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh--cCCccccccCc--c---
Confidence 99999999999999998999999999998887765 369999999988777665443332 22222111000 0
Q ss_pred CCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhH
Q 009816 272 LSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNL 351 (524)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 351 (524)
+ +. + . . +. ..++.++...+..++.....+.+..|+|.|+++. +|+++.+.+.+
T Consensus 194 -~---~~-----~------~---~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~g~s~~~~~~~ 246 (394)
T PRK03699 194 -A---DK-----P------V---A----KE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKK----FGMSLEDAGNL 246 (394)
T ss_pred -c---cC-----c------c---c----cc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCChHHhhHH
Confidence 0 00 0 0 0 00 1134556666666666677778889999999887 79999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhh
Q 009816 352 STLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADL 431 (524)
Q Consensus 352 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (524)
.+...++..+++++.+++.||+++|+.+.....+..+...++.. ..+.+...+..++.|++.+..++.......+..
T Consensus 247 ~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 323 (394)
T PRK03699 247 VSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN---TDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT 323 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999877666555444333322 233344455566777777777666666555544
Q ss_pred cccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 432 GTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRLVVAE 499 (524)
Q Consensus 432 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (524)
+ +.++...|......++|..++|.+.|++.|. |++..++..+++.+++.+......+-+
T Consensus 324 ~---------~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (394)
T PRK03699 324 K---------VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGFVS 383 (394)
T ss_pred c---------CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3 2235667888888899999999999999988 888888888877776655544444333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=282.55 Aligned_cols=365 Identities=14% Similarity=0.124 Sum_probs=274.3
Q ss_pred cchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHh
Q 009816 34 NHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLG 113 (524)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 113 (524)
+..|..+..+.++.+............+|.+.++ +|+++ ++.|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------------~g~s~-------~~~g 58 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQD------------------------------LGISE-------GVAG 58 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH------------------------------cCCCH-------HHHH
Confidence 3355554444444443333443444456777777 88887 9999
Q ss_pred HHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHH
Q 009816 114 ELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVV 193 (524)
Q Consensus 114 ~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i 193 (524)
+..+.+.++..+++++.|+++||+|||++++.+.++.+++.++++++ ++++.+++.|+++|++.+...+...+++
T Consensus 59 ~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i 133 (394)
T PRK10213 59 QSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-----NSFSLLLIGRACLGLALGGFWAMSASLT 133 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----ChHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999886 8999999999999999999999999999
Q ss_pred hhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccC
Q 009816 194 GNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESL 272 (524)
Q Consensus 194 ~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (524)
.|++|+++|++++++...+.++|.+++|++++.+. .+|||+.|++.+++.++..+......||.++++..
T Consensus 134 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~--------- 204 (394)
T PRK10213 134 MRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH--------- 204 (394)
T ss_pred HHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCccccc---------
Confidence 99999999999999999999999999999999988 57999999998877766544444445653311000
Q ss_pred CccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccCCCCCChhhhhhH
Q 009816 273 SPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWL-PFYVSHTAVDGKYLSSEMAGNL 351 (524)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~ 351 (524)
.....++.+++|.++...+..++.....+....++ |.|.++ +|+++.+.+..
T Consensus 205 ----------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~g~s~~~~g~~ 257 (394)
T PRK10213 205 ----------------------QKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNL-----AGFGVDGLTLV 257 (394)
T ss_pred ----------------------chhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhHHHHH
Confidence 01123467788888877666556555555656665 556554 69999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhh
Q 009816 352 STLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADL 431 (524)
Q Consensus 352 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (524)
....+++.+++.++.+++.||.+ |+.+.....+..+..+++... ..+.+......++.|++.+...+...+.+.+..
T Consensus 258 ~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~ 334 (394)
T PRK10213 258 LLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLW--GSDKIVATGVAIIWGLTFALVPVGWSTWITRSL 334 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHC
Confidence 99999999999999999999954 444333333333332222221 234455556677788888777777777777776
Q ss_pred cccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHH
Q 009816 432 GTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALIS 488 (524)
Q Consensus 432 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 488 (524)
++ ..++..++.....++|..+||.+.|++.|. |+...+...+++.++.
T Consensus 335 ~~---------~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 335 AD---------QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred cc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 52 235666777778889999999999999997 7777777766554444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=286.89 Aligned_cols=355 Identities=13% Similarity=0.161 Sum_probs=274.1
Q ss_pred ccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhccc
Q 009816 55 KTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLG 134 (524)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~ 134 (524)
..++++.|.+++| +|++. .+.|++.+.+.+++.+++++.|+++
T Consensus 26 ~~~~~~lp~i~~~------------------------------~~~s~-------~~~g~~~s~~~~~~~l~~~~~g~l~ 68 (393)
T PRK09705 26 TSVGPLLPQLRQA------------------------------SGMSF-------SVAALLTALPVVTMGGLALAGSWLH 68 (393)
T ss_pred hccchhHHHHHHH------------------------------hCCCH-------HHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 6777889999988 88887 9999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhh
Q 009816 135 DRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTS 214 (524)
Q Consensus 135 Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 214 (524)
||+|||+++..+..+++++.++++++ ++++.+++.|+++|++.+...+....++.+++| ++|+++++++..+..
T Consensus 69 dr~G~r~~l~~~~~l~~~~~~~~~~a-----~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~ 142 (393)
T PRK09705 69 QHVSERRSVAISLLLIAVGALMRELY-----PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALM 142 (393)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHC-----cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHH
Confidence 99999999999999999999999997 999999999999999999999999999999997 789999999999999
Q ss_pred hHHHHHHHHHHHhhh--cCchhHHHHhHHHHHHHHHHHHHhcC-CCCCCCCCCCccccccCCccccCCCcccccccchhh
Q 009816 215 IGNITGSLVASALLT--YGWGWSFVVPGLIIAFVGLIVFLFLP-VNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETK 291 (524)
Q Consensus 215 ~G~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (524)
.|..+|+.+++.+.+ .+||+.+.+.++..++. +..++... +.|+.++ + + +
T Consensus 143 ~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~--~------~-------------- 195 (393)
T PRK09705 143 GGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA-LFAWWWQSAREVASSH----K--T------T-------------- 195 (393)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHhcCCCcccc----C--C------C--------------
Confidence 999999999988774 38999887766654443 32333222 2111100 0 0 0
Q ss_pred hhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHh
Q 009816 292 IEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISD 371 (524)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 371 (524)
...++.+++++.+...+..++....+.....++|.|+++ +|.+..+++...++.+++.++++++.+++.|
T Consensus 196 -----~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-----~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~ 265 (393)
T PRK09705 196 -----TTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-----IGASAQYSGSLLALMTLGQAAGALLMPAMAR 265 (393)
T ss_pred -----cCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 001233556777777777777777778888999999987 5999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHH
Q 009816 372 RLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAII 451 (524)
Q Consensus 372 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 451 (524)
|.++|+....+..+..++...+... +. +.... ..++.|++.+..++.......+..++ ++.+++..|+.
T Consensus 266 r~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~-------~~~~g~~~g~~ 334 (393)
T PRK09705 266 HQDRRKLLMLALVLQLVGFCGFIWL-PL-QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQ-------PAIAGKLVAFM 334 (393)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHc-cc-hHHHH--HHHHHHHhccchHHHHHHHHHhhcCC-------HHHHHHHHHHH
Confidence 9999988877766655554443322 11 22221 23345666666666655555555532 35679999999
Q ss_pred HhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009816 452 DGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAALISGLLLTRLVVAEVA 501 (524)
Q Consensus 452 ~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (524)
+...+++..++|.+.|++.|. ++...|++.++++++..+... ...+|++
T Consensus 335 ~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 385 (393)
T PRK09705 335 QGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITL-RFAPARF 385 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-Hhccccc
Confidence 999999999999999999998 577888887776666544444 3344443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=290.05 Aligned_cols=368 Identities=18% Similarity=0.154 Sum_probs=285.1
Q ss_pred HHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHH
Q 009816 40 LIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAF 119 (524)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~ 119 (524)
....++.....+..+..+++..|.+.++ +|+++ .+.|++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~s~-------~~~g~~~s~~ 47 (377)
T TIGR00890 5 VLVGTVIMCFTSGYVYTWTLLAPPLGRY------------------------------FGVGV-------TAVAIWFTLL 47 (377)
T ss_pred EeHHHHHHHHHhhHHhhhhhHHHHHHHH------------------------------hCCCH-------HHHHHHHHHH
Confidence 3344444445555677888899999988 88887 9999999999
Q ss_pred HHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhcccc
Q 009816 120 LSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGK 199 (524)
Q Consensus 120 ~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 199 (524)
.+++.++++++|+++||+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.+..++.....+.+++|
T Consensus 48 ~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~- 121 (377)
T TIGR00890 48 LIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA-----DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP- 121 (377)
T ss_pred HHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-
Confidence 99999999999999999999999999999999999999997 999999999999999999888888889999996
Q ss_pred ccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccC
Q 009816 200 SKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIG 278 (524)
Q Consensus 200 ~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (524)
++|+++.++...+.++|..+++++.+.+. ..|||+.|++.+++.++..+..++++++++++..+++ + + .
T Consensus 122 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~---~----- 191 (377)
T TIGR00890 122 DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTN-I-E---V----- 191 (377)
T ss_pred cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccC-c-c---c-----
Confidence 68999999999999999887655554444 6799999999998888877777666665433211100 0 0 0
Q ss_pred CCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHH
Q 009816 279 EGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVG 358 (524)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 358 (524)
+++....++.+++|.++...+..++..........+.+.|.++ +|.+..+.+.+.+...++
T Consensus 192 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 252 (377)
T TIGR00890 192 --------------SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-----LGLSDGFLVLAVSISSIF 252 (377)
T ss_pred --------------chhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHH
Confidence 0011224567788888877776666655555556667777666 488888899999999999
Q ss_pred HHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCC
Q 009816 359 GVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLK 438 (524)
Q Consensus 359 ~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (524)
.++++++.|++.||++||+.+..+.....++.+.+... +..+........++.+++.+...+.......+.+|+
T Consensus 253 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~----- 326 (377)
T TIGR00890 253 NGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI-PMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGP----- 326 (377)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc-ccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhh-----
Confidence 99999999999999999998887777666665544332 212222233344556666666666666677777763
Q ss_pred CCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHH
Q 009816 439 GNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALIS 488 (524)
Q Consensus 439 ~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 488 (524)
+.++++.|+.+....+|..++|.+.|.+.+. +|+..|.+.+++.+++
T Consensus 327 ---~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 327 ---ANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred ---hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 6679999999999999999999999999887 8998888887766654
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=291.56 Aligned_cols=375 Identities=14% Similarity=0.133 Sum_probs=274.6
Q ss_pred cchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHh
Q 009816 34 NHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLG 113 (524)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 113 (524)
+.++..+..++++++.+.+++...+...|.+.++ +|+++ .+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------------------------~~~s~-------~~~~ 56 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKAD------------------------------LGLTD-------MEGA 56 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------------------hCCCH-------HHHH
Confidence 4666777888899999999999999999999888 88887 8999
Q ss_pred HHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHH
Q 009816 114 ELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVV 193 (524)
Q Consensus 114 ~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i 193 (524)
++.+.+.+++.++++++|+++||+|||++++++.++.+++.++++++ ++++.+++.|+++|++.+...+....++
T Consensus 57 ~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~g~g~~~~~~~~~~ 131 (426)
T PRK12307 57 FLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA-----SGVIMLTLSRFIVGMGMAGEYACASTYA 131 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 8999999999999999999999999999
Q ss_pred hhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccC
Q 009816 194 GNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESL 272 (524)
Q Consensus 194 ~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (524)
.|++|+++|+++.++...+..+|.++++.+.+.+. .++||+.|++..+ ..+..+......||++++...+.++
T Consensus 132 ~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~-~~~~~~~~~~~~p~~~~~~~~~~~~----- 205 (426)
T PRK12307 132 VESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL-PVLLVIYIRARAPESKEWEEAKLSG----- 205 (426)
T ss_pred HHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH-HHHHHHHHHHHCCCChHHHHhhhhc-----
Confidence 99999999999999999999999999998888776 5799999988443 3322222222233332211100000
Q ss_pred CccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHH---HHHHHHHHHHHHHHHHhhcccCCCCCChhhhh
Q 009816 273 SPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFF---AKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAG 349 (524)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 349 (524)
. .+. .+...+.....+++.+++|.++........ .....+....++|.|+++ .|+++.+.+
T Consensus 206 ~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~ 269 (426)
T PRK12307 206 K-GKH----------SQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-----EGFDTGVVS 269 (426)
T ss_pred c-ccc----------cccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHH
Confidence 0 000 000001112345677888877654433222 222333466789999887 488999999
Q ss_pred hHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 009816 350 NLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSA 429 (524)
Q Consensus 350 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (524)
...+...++.++++++.|++.||++||+.+..+.++..+..+.+... ............+..++...+..+.....+.+
T Consensus 270 ~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (426)
T PRK12307 270 NLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI-PQDNYLLLGACLFGLMATNVGVGGLVPKFLYD 348 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 99999999999999999999999999998877766655544333221 12222222222222222222333445566667
Q ss_pred hhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHH
Q 009816 430 DLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTML 481 (524)
Q Consensus 430 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~ 481 (524)
.+| ++.+|++.|+.+....+++.++|.+.|++.+. ++....++.
T Consensus 349 ~~p--------~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~ 393 (426)
T PRK12307 349 YFP--------LEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFI 393 (426)
T ss_pred hCc--------HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 776 36789999999999999999999999999987 655443333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=282.53 Aligned_cols=354 Identities=19% Similarity=0.122 Sum_probs=264.6
Q ss_pred HHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHHHHHHHhhhhh
Q 009816 50 YHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYAGGMFF 129 (524)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~ 129 (524)
+......+++..|.+.+| +|+++ .+.|++.+.+.+++.+++++
T Consensus 3 ~~~~~~~~~~~lp~i~~~------------------------------~~~s~-------~~~g~~~s~~~~g~~i~~~~ 45 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAED------------------------------IDVSK-------EELGLLAITYPAAFLALTIP 45 (368)
T ss_pred hhHHHHHHHhhHHHHHHH------------------------------hCcCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888888 88887 99999999999999999999
Q ss_pred hhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhccccccccceehhh
Q 009816 130 SGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIW 209 (524)
Q Consensus 130 ~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 209 (524)
.|+++||+|||+++..+......+.+....+ ++++.+++.|+++|++.+. .+.....++|++|+++|++++++.
T Consensus 46 ~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~ 119 (368)
T TIGR00903 46 SGLLLDRAFKRWFLFGSLATFAAAAGRLLDP-----FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLL 119 (368)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHH
Confidence 9999999999998776655554443333332 6899999999999999986 556667779999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccc
Q 009816 210 NAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRR 288 (524)
Q Consensus 210 ~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (524)
..+..+|.+++++++..+. ++|||+.|++.++++++..++.++.+||+|+++.+.. . .
T Consensus 120 ~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~-------~--------------~ 178 (368)
T TIGR00903 120 SFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGF-------G--------------F 178 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCc-------c--------------h
Confidence 9999999999999999988 6799999999999988888888888998775431100 0 0
Q ss_pred hhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHH
Q 009816 289 ETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGH 368 (524)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 368 (524)
++...++++++++|.+|...+..++....++++.+|+|.|+++. |++.. .+....+..+.+.++ .++
T Consensus 179 ----~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~-----g~s~~-~~~~~~l~~~~g~~g---~~~ 245 (368)
T TIGR00903 179 ----KDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPA-----GLEDI-AGDAVALAILAGLIG---VAV 245 (368)
T ss_pred ----HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCChH-HHHHHHHHHHHHHHH---HHH
Confidence 00112356889999999999999999999999999999999774 77764 555555555555554 467
Q ss_pred HHhhhhhh---HHHHH-HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccch
Q 009816 369 ISDRLDAR---AITAA-SFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRAL 444 (524)
Q Consensus 369 l~dr~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (524)
++||..|| +.... ...+.++....+.. ..+....+....+.+++....++....+.++.+|+ +.|
T Consensus 246 ~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--------~~r 314 (368)
T TIGR00903 246 IPDRVARAGLRSIYIRAAALLIAAFFLALAF---ELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK--------ELH 314 (368)
T ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH---ccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch--------hhc
Confidence 77776543 33222 22222222222211 12223334455556666667777777788888874 678
Q ss_pred hHHHHHHHhhhhhhhhhhhhhhHhhcccChhHHHHHHHHHHHHHHHHH
Q 009816 445 ATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 445 g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 492 (524)
|++.|+.+..+++++.++|.+.+.+.. +....|.+.++..+++.+..
T Consensus 315 gt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 315 GKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987774 67777888877777665554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=286.64 Aligned_cols=406 Identities=23% Similarity=0.401 Sum_probs=287.8
Q ss_pred cccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhh
Q 009816 32 FKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTAL 111 (524)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (524)
.++.+|..+....+.+...+.++..+....|.+. + +|+++ ++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~------------------------------~g~s~-------~~ 62 (438)
T TIGR00712 21 YKRLRWQVFLGIFFGYAAYYLVRKNFALAMPYLV-E------------------------------QGFSK-------GE 62 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHhhhHHHH-H------------------------------cCCCH-------hH
Confidence 3445677778888888999999988888877664 3 45565 89
Q ss_pred HhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHH
Q 009816 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVA 191 (524)
Q Consensus 112 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 191 (524)
.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.+.... ..++++.+.+.|++.|++.+..++....
T Consensus 63 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~g~~~g~~~~~~~~ 141 (438)
T TIGR00712 63 LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW-ATSSIAIMFVLLFLNGWFQGMGWPPCGR 141 (438)
T ss_pred hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 999999999999999999999999999999999999999998888765310 0146778889999999999999999999
Q ss_pred HHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh--hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 009816 192 VVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL--TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEED 269 (524)
Q Consensus 192 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~--~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (524)
.+.|++|+++|++++++.+.+.++|..+++.+.+... ..+||+.|++.+++.++..++.++++||+|++...++.++.
T Consensus 142 ~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 221 (438)
T TIGR00712 142 TMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEY 221 (438)
T ss_pred HHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhc
Confidence 9999999999999999999999999999987766543 46899999999988888777777888887654321110000
Q ss_pred ccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhh
Q 009816 270 ESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAG 349 (524)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 349 (524)
+.+..++..+ + .+.+.+.+.......++++.+|...+..++.....++...++|.|+++. .|+++.+++
T Consensus 222 ~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~g~s~~~~~ 290 (438)
T TIGR00712 222 RNDYPDDYNE---K----AEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEV----KHFALDKSS 290 (438)
T ss_pred cccccccccc---c----cccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHc----cCCChhhHH
Confidence 0000000000 0 0000000111123467889898888877777777788889999999987 799999999
Q ss_pred hHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHH--HHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 009816 350 NLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAI--PALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAV 427 (524)
Q Consensus 350 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 427 (524)
+...+..+++++++++.|++.||+++++....+...... ............+.+......++.|++..+.........
T Consensus 291 ~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 370 (438)
T TIGR00712 291 WAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHA 370 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 999999999999999999999999644322222222111 111111111122233333334444543322222222344
Q ss_pred HhhhcccccCCCCccchhHHHHHHHhhhhhhh-hhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHH
Q 009816 428 SADLGTHSSLKGNSRALATVTAIIDGTGSVGA-AIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRL 495 (524)
Q Consensus 428 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
.+..| ++.+|++.|+.+....+++ +++|.+.|.+.|. +|+..+++..++.+++.+..+..
T Consensus 371 ~~~~~--------~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 371 LELAP--------KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred HHhcC--------hhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 45555 3677999999998888875 6899999999998 89999988887777666655533
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=266.93 Aligned_cols=387 Identities=21% Similarity=0.213 Sum_probs=323.8
Q ss_pred cccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhh
Q 009816 32 FKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTAL 111 (524)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (524)
.++.+++.+.+..+++.+.++.+..++++.+.+.+| +|+|+ .|
T Consensus 8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~------------------------------~~LS~-------~q 50 (417)
T COG2223 8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSD------------------------------FGLSE-------GQ 50 (417)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc------------------------------cCCCH-------HH
Confidence 346677788888999999999999999999999977 89998 99
Q ss_pred HhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHH
Q 009816 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVA 191 (524)
Q Consensus 112 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 191 (524)
.+++.+...+...+..++.|.+.||||.|++..++.++..+..+..+++. ..++++++++.+.+.|++ |........
T Consensus 51 ~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~--~~~~~~~ll~~gll~G~~-GasFav~m~ 127 (417)
T COG2223 51 KGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAV--TYPSTWQLLVIGLLLGLA-GASFAVGMP 127 (417)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHc--cCCchHHHHHHHHHHhcc-cceehcccc
Confidence 99999999999999999999999999999999999999999999999872 234557999999999999 556788899
Q ss_pred HHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcC---chhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 009816 192 VVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYG---WGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNE 267 (524)
Q Consensus 192 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~g---wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (524)
.++.|||+|++|.++|+.. ..++|..+...++..+. ..+ ||....+..+..++..+..++.+.|.|+.+...++.
T Consensus 128 ~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~ 206 (417)
T COG2223 128 NASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQ 206 (417)
T ss_pred cccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccc
Confidence 9999999999999999999 88999999988888877 567 999999988888888889999998887753222111
Q ss_pred ccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhh
Q 009816 268 EDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEM 347 (524)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 347 (524)
. +..++.+.++++.|.+.+.++.....+.++..++|.|+++. ++.++.+
T Consensus 207 ~---------------------------~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~----fg~~~~~ 255 (417)
T COG2223 207 L---------------------------PAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ----FGLSPVT 255 (417)
T ss_pred c---------------------------hhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCChhh
Confidence 0 02346778899999999999999999999999999999999 9999999
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHhhhhhhhHHH
Q 009816 348 AGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGH----LSLALNIALMFITGMFVNGPYALI 423 (524)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~ 423 (524)
++.+.....+.+.+.++++|+++||+|.+|.+...+..++++..+.....+. .+........+..+++.+......
T Consensus 256 Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv 335 (417)
T COG2223 256 AGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV 335 (417)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchh
Confidence 9999999999999999999999999999999888888888777666543211 334444454555555666666566
Q ss_pred HHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 424 TTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAALISGLLLTRLVVAE 499 (524)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (524)
+-.++..++ +..|.+.|+...++.+|+..-|...|...+. .+...|++...+.+++.++....+.++
T Consensus 336 fk~Ip~if~---------~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 336 FKMIPVIFP---------KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred eeechHHHH---------hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666554 4568999999999999999999999999988 589999999988888877766555443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=279.44 Aligned_cols=366 Identities=13% Similarity=0.121 Sum_probs=273.5
Q ss_pred HHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHHHH
Q 009816 42 VTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLS 121 (524)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~~l 121 (524)
...+..+.....+.......|.+.+| +|++. ++.|++.+.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------------~g~s~-------~~~g~~~s~~~~ 49 (382)
T PRK10091 7 SLALGTFGLGMAEFGIMGVLTELAHD------------------------------VGISI-------PAAGHMISYYAL 49 (382)
T ss_pred HHHHHHHHHHhhHHHHHhChHHHHHH------------------------------cCCCH-------HHHhHHHHHHHH
Confidence 34445555566666777788888888 88887 899999999999
Q ss_pred HHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhcccccc
Q 009816 122 IYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSK 201 (524)
Q Consensus 122 ~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 201 (524)
++.++++++|+++||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+...+....++.+++|+++
T Consensus 50 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 124 (382)
T PRK10091 50 GVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-----SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK 124 (382)
T ss_pred HHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH
Confidence 999999999999999999999999999999999999997 999999999999999999888888899999999999
Q ss_pred ccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCC
Q 009816 202 RGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEG 280 (524)
Q Consensus 202 r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (524)
|++++++...+..+|..++|++++.+. .+|||+.|++.+++.++..+..++.+||.+++.+. +
T Consensus 125 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~---~------------- 188 (382)
T PRK10091 125 VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG---G------------- 188 (382)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc---C-------------
Confidence 999999999999999999999998887 57999999999888777666666667764321100 0
Q ss_pred cccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHH
Q 009816 281 VTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGV 360 (524)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 360 (524)
.....+.++++..+......++.....+....+++.++.+. +|+++.+.+++....+++.+
T Consensus 189 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~~~~~~~~~~~~~ 249 (382)
T PRK10091 189 ---------------LREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFI----SGFSETSMTFIMMLVGLGMV 249 (382)
T ss_pred ---------------HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHH
Confidence 00012346677666655554444444445556677777766 79999999999999999999
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCC
Q 009816 361 LGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGN 440 (524)
Q Consensus 361 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (524)
+++++.+++.||+++|+.+..+..+..++.+.+... .++.+...+..++.+++.....++......+..++
T Consensus 250 ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------- 320 (382)
T PRK10091 250 LGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF--GGMKTASLIFAFICCAGLFALSAPLQILLLQNAKG------- 320 (382)
T ss_pred HHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc-------
Confidence 999999999999999998887776666555444322 12223333444444444444333333333333221
Q ss_pred ccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHHHHHHHHHHH
Q 009816 441 SRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAALISGLLLTRL 495 (524)
Q Consensus 441 ~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
++..+.+ ..+....+|..+||.+.|++.|. +|+..+...+++..+........
T Consensus 321 ~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 321 GELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred chHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 2334443 34667789999999999999985 78888888876666555444433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=288.67 Aligned_cols=388 Identities=16% Similarity=0.203 Sum_probs=283.1
Q ss_pred cccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhh
Q 009816 32 FKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTAL 111 (524)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (524)
.++++|+.+..++++++.+++++...+.+.|.+.++ +|+++ .+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------------------~~~s~-------~~ 48 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGE------------------------------FGLTT-------VD 48 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------hCCCh-------hh
Confidence 457888999999999999999999999999999888 88887 99
Q ss_pred HhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHH
Q 009816 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVA 191 (524)
Q Consensus 112 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 191 (524)
.|++.+.+.++..+++++.|+++||+|||++++++.++.+++.++++++ ++++.+++.|++.|++.+...+...+
T Consensus 49 ~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~ 123 (405)
T TIGR00891 49 AASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA-----PGYITMFIARLVIGIGMGGEYGSSAA 123 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999986 89999999999999999999999999
Q ss_pred HHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcC--chhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 009816 192 VVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYG--WGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEE 268 (524)
Q Consensus 192 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~g--wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (524)
++.|++|+++|++++++...+..+|.++++.+++.+. ..+ ||+.|++.++..++ .++....+||++++...++.++
T Consensus 124 ~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 202 (405)
T TIGR00891 124 YVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIF-ALWLRKNIPEAEDWKEKHAGKA 202 (405)
T ss_pred HHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHhhhhh
Confidence 9999999999999999999999999999999998887 345 99999886554443 3445556676543221111000
Q ss_pred cccCCccccCCCcccccccchhhhhhhhhhHHHHhcC-CC-cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChh
Q 009816 269 DESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKI-PG-VAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSE 346 (524)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 346 (524)
......++..+. ++..+ ...++.....++..++ +. +........+..........++|.|+.+. +|++..
T Consensus 203 ~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~ 274 (405)
T TIGR00891 203 LVRTMVDILYGG--EHRIA--NIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD----LGLSPH 274 (405)
T ss_pred hhhhHHHHHhcc--chhhh--hhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH----hCCCHH
Confidence 000000000000 00000 0000000011111111 11 11222223333444455667889998876 799999
Q ss_pred hhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHH
Q 009816 347 MAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTA 426 (524)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (524)
+.+.+.+...++.++++++.+++.||+++|+.+..+.....+........ ..+.+...+..++.+++.....+.....
T Consensus 275 ~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (405)
T TIGR00891 275 TVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI--GANVAVLGLGLFFQQMLVQGIWGILPKH 352 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHccchhhHHHH
Confidence 99999999999999999999999999999998877766543333222221 2333444444455566666666666777
Q ss_pred HHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-C-hhHHHHH
Q 009816 427 VSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-S-WTAVFTM 480 (524)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-~~~~~~~ 480 (524)
+.+..| ++.++++.|+.+.+..+|..++|++.|++.|. | |+..+..
T Consensus 353 ~~~~~~--------~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 353 LGEYFP--------TDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HhhhCC--------cchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 777776 36679999999999999999999999999998 5 7655544
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=284.13 Aligned_cols=372 Identities=28% Similarity=0.486 Sum_probs=282.2
Q ss_pred HHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHHHHHHH
Q 009816 45 FAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYA 124 (524)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~~l~~~ 124 (524)
++++..+.++..++...|.+.++ +|+++ .+.|++.+++.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~------------------------------~g~s~-------~~~g~~~~~~~~~~~ 44 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLVEE------------------------------IGLSK-------TDLGLLLSSFSIAYG 44 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHHHH------------------------------hCCCH-------hHHHHHHHHHHHHHH
Confidence 45778889999999999999888 88887 999999999999999
Q ss_pred hhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhccccccccc
Q 009816 125 GGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGL 204 (524)
Q Consensus 125 ~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 204 (524)
++++++|+++||+|||++++++.++.+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|++
T Consensus 45 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~ 119 (379)
T TIGR00881 45 ISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-----TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGT 119 (379)
T ss_pred hhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhhee
Confidence 999999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred eehhhhhhhhhHHHHHH-HHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcc
Q 009816 205 IMGIWNAHTSIGNITGS-LVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVT 282 (524)
Q Consensus 205 ~~~~~~~~~~~G~~ig~-~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (524)
++++...+..+|..++| .+++.+. ..+||+.|++.+++.++..++.+++.||+++.....+.++....+. +.+
T Consensus 120 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--- 194 (379)
T TIGR00881 120 WVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEP--DGD--- 194 (379)
T ss_pred eEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCccccc--ccc---
Confidence 99999999999999999 4666655 5799999999888887777777777777655432211111100000 000
Q ss_pred cccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhh
Q 009816 283 QPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLG 362 (524)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 362 (524)
..+.+++.++.....+..+++|.++...+..++..........+.|.|+++. +|+++.+.+.......++.+++
T Consensus 195 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~ 268 (379)
T TIGR00881 195 --AEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQE----KGFSKEKASWAFTLYELGGLVG 268 (379)
T ss_pred --cccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHcchh
Confidence 0000011111223456678899998888888888888888889999999887 7999999999999999999999
Q ss_pred hHHHHHHHhhhhhh-HHHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCC
Q 009816 363 GILAGHISDRLDAR-AITA-ASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGN 440 (524)
Q Consensus 363 ~~~~g~l~dr~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (524)
+++.+++.||..++ +... ..........+......+..+........++.|+...+..........+..|
T Consensus 269 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------- 340 (379)
T TIGR00881 269 TLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAP-------- 340 (379)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcC--------
Confidence 99999999986433 3222 2111111111122111112333444455556666555555555566666666
Q ss_pred ccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHH
Q 009816 441 SRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAV 477 (524)
Q Consensus 441 ~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~ 477 (524)
++.++++.|+.+....+|..++|.+.|.+.|. ||+..
T Consensus 341 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 341 KKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred cchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 36789999999999999999999999999987 76654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=278.72 Aligned_cols=360 Identities=14% Similarity=0.052 Sum_probs=282.6
Q ss_pred ccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhH
Q 009816 33 KNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALL 112 (524)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (524)
+++.+...+.+.+..+++++....+.+..|.+.++ +|+++ .+.
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~s~-------~~~ 50 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVED------------------------------FNAGA-------EWV 50 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHH------------------------------hCCCH-------HHH
Confidence 45566667777777788888888787888888777 88777 899
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHH
Q 009816 113 GELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAV 192 (524)
Q Consensus 113 g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 192 (524)
++..+.+.+++.+++++.|+++||+|||++++++.++.+++.+++.++ ++++.+++.|+++|++.+...+...++
T Consensus 51 ~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~ 125 (406)
T PRK15402 51 PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA-----QSIEQFTLLRFLQGIGLCFIGAVGYAA 125 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHhHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999998886 899999999999999999888999999
Q ss_pred HhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 009816 193 VGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDES 271 (524)
Q Consensus 193 i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (524)
+.|++|+++|.+++++......+|..++|.+++.+. ..+||+.|++.+++.++..+..++..||++++..++.
T Consensus 126 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 199 (406)
T PRK15402 126 IQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKL------ 199 (406)
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccc------
Confidence 999999999999999998888899999999998887 4699999999888887776656666665532211000
Q ss_pred CCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhH
Q 009816 272 LSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNL 351 (524)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 351 (524)
+.++...+++..+++|.++...+..++..........+.|.++.+. +|+++.+.+..
T Consensus 200 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~g~~~~~~g~~ 256 (406)
T PRK15402 200 -------------------SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISG----EQLSSYEYGLL 256 (406)
T ss_pred -------------------cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----hCCCHHHHHHH
Confidence 0001223456788999988877776666666666667788888776 79999999988
Q ss_pred HHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 009816 352 STLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSY--GHLSLALNIALMFITGMFVNGPYALITTAVSA 429 (524)
Q Consensus 352 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (524)
.....++.+++.++.+++.||+++|+.+..+.....++...+.... ...+.++.....++.|++.+...+........
T Consensus 257 ~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~ 336 (406)
T PRK15402 257 QVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF 336 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Confidence 8878888999999999999999999988877766655554443321 12234445556666777766655544443322
Q ss_pred hhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 430 DLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 430 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
.+ ++.+|++.++.+..+.++..+|+.+.+++.+.
T Consensus 337 -~~--------~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 337 -SS--------DVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred -hc--------cccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 22 25679999999999999999999999999887
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=280.60 Aligned_cols=383 Identities=15% Similarity=0.175 Sum_probs=267.7
Q ss_pred chhhHHHHHHHHHHHHHhhcccccccccc-cCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHh
Q 009816 35 HQAIVLIVTFFAYTSYHAARKTTSIVKST-LDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLG 113 (524)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 113 (524)
++++.+...+++++.+++|...++.+.|. +.++.. -+.++ . .+
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----------------------------~~~~~-------~-~~ 62 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFF----------------------------PQVSP-------A-MG 62 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------------------CCCCc-------H-HH
Confidence 44567778888999999999999987764 333310 03333 2 34
Q ss_pred HHH-----HHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHH--------HHHHHHHHHHH
Q 009816 114 ELD-----LAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFY--------YYLVVQMLAGL 180 (524)
Q Consensus 114 ~~~-----s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~r~l~G~ 180 (524)
++. ++.+++..+++++.|+++||+|||++++++.+++++++++++++ +++. .+++.|+++|+
T Consensus 63 ~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~R~l~G~ 137 (438)
T PRK09952 63 TLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLL-----PSFSTIGWWAPVLLVTLRAIQGF 137 (438)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHHHHh
Confidence 432 45567778999999999999999999999999999999999997 7776 58899999999
Q ss_pred hhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh---------hcCchhHHHHhHHHHHHHHHHHH
Q 009816 181 FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL---------TYGWGWSFVVPGLIIAFVGLIVF 251 (524)
Q Consensus 181 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~---------~~gwr~~f~~~~~~~~~~~~~~~ 251 (524)
+.|..++....++.|++|+++|++..+....+..+|.++++.+...+. ++|||++|++.+++.++ .+...
T Consensus 138 ~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~ 216 (438)
T PRK09952 138 AVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVR 216 (438)
T ss_pred hhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999999999877766553 36999999987765543 34444
Q ss_pred HhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHHHH
Q 009816 252 LFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFAL-CLFFAKLVAYTFLYWLP 330 (524)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 330 (524)
...||+|++...+.+.+ + ..+ +.......+++|+.+.... ..++..+..+....+.|
T Consensus 217 ~~~~es~~~~~~~~~~~----~---~~~---------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (438)
T PRK09952 217 NGMEESAEFEQQQHEQA----A---AKK---------------RIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFAL 274 (438)
T ss_pred HhCCCChhHHHHHhhcc----c---ccc---------------cCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566654321110000 0 000 0001123455666555543 34444556677788999
Q ss_pred HHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHH
Q 009816 331 FYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSY-GHLSLALNIALM 409 (524)
Q Consensus 331 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 409 (524)
.|+++. +|++......+....++..+++.++.|+++||++||+.+..+.++..+....+.... .....+..+...
T Consensus 275 ~y~~~~----~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (438)
T PRK09952 275 NYSTQN----LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSI 350 (438)
T ss_pred HHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999876 788887665555666777788899999999999999988776655444332222211 112233333344
Q ss_pred HHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhh-hhhhhhhhhhhHhhccc---ChhHHHHHHHHHH
Q 009816 410 FITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTG-SVGAAIGPLLTGYISAT---SWTAVFTMLMAAA 485 (524)
Q Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~i~~~~~g~l~~~---~~~~~~~~~~~~~ 485 (524)
++.+++.+...+.......+.+|+ +.|+++.|+.+... .+++.++|.+.+++.+. +|...+.+.+++.
T Consensus 351 ~l~~~~~~~~~~~~~~~~~e~~p~--------~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 422 (438)
T PRK09952 351 MLANIAHDMVVCVQQPMFTEMFGA--------SYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGC 422 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCc--------chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 555666666666777788888874 56788888865554 58999999999999874 4777777776666
Q ss_pred HHHHHHHH
Q 009816 486 LISGLLLT 493 (524)
Q Consensus 486 ~~~~~~~~ 493 (524)
+++.+..+
T Consensus 423 ~i~~v~~~ 430 (438)
T PRK09952 423 LISAMTAL 430 (438)
T ss_pred HHHHHHHH
Confidence 66655543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=292.83 Aligned_cols=429 Identities=16% Similarity=0.149 Sum_probs=280.6
Q ss_pred ccccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchh
Q 009816 31 SFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTA 110 (524)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 110 (524)
+..++++.++.++.++.+.+.+|...++.+.|.+..+. ++ .+ ...+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~-----------------------------~~-~~--~~~~~~ 56 (502)
T TIGR00887 9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVY-----------------------------YH-GK--GPLPSS 56 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------cc-Cc--ccchHH
Confidence 45677888888899999999999999999888765431 11 00 112236
Q ss_pred hHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccc-cchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 111 LLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWG-NVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 111 ~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
+.+++.+.+.+++.++++++|+++||+|||+++.++.++..++.++++++... ...+++.+++.|+++|++.+...+..
T Consensus 57 ~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 136 (502)
T TIGR00887 57 VSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLS 136 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHH
Confidence 78999999999999999999999999999999999999999999988886100 00127899999999999999999999
Q ss_pred HHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh------------------------hcCchhHHHHhHHHHHH
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL------------------------TYGWGWSFVVPGLIIAF 245 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~------------------------~~gwr~~f~~~~~~~~~ 245 (524)
..++.|++|+++|++++++.+....+|.++++.++..+. +++||++|.+.++.+++
T Consensus 137 ~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i 216 (502)
T TIGR00887 137 AIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALL 216 (502)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998876543 24799999887665554
Q ss_pred HHHHHHHhcCCCCCCCCCCCcccc-ccCC----ccccCCCcccccccchhhhhhhhhhHHHHhcC---CCcHHH----HH
Q 009816 246 VGLIVFLFLPVNPESVGTDTNEED-ESLS----PKKIGEGVTQPLLRRETKIEEKAVGFIEAWKI---PGVAPF----AL 313 (524)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~ 313 (524)
..+..+++||+|++...++++++ ..+. .+.+.++..++..+.+++.+....++++++++ ++.+.. ..
T Consensus 217 -~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 295 (502)
T TIGR00887 217 -ALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAG 295 (502)
T ss_pred -HHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHH
Confidence 45567789999997433222211 1100 00000000000000000001111245555542 222111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhh------------HHHHHHHHHHhhhHHHHHHHhhhhhhHHHHH
Q 009816 314 CLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGN------------LSTLFDVGGVLGGILAGHISDRLDARAITAA 381 (524)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~ 381 (524)
..+.....+++...+.|.++++. |++....+. ...+..++.+++.++.+++.||+|||+.+..
T Consensus 296 ~~~~~~~~~y~~~~~~p~i~~~~-----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~ 370 (502)
T TIGR00887 296 SWFLLDIAFYGVNLNQKVILSAI-----GYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLM 370 (502)
T ss_pred HHHHHHHHHHccccccHHHHHHH-----cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Confidence 22333344556667788888764 666443221 2233445667788999999999999999887
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhh
Q 009816 382 SFMYCAIPALFFYRSYGHLSLALNIALMFIT-GMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAA 460 (524)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 460 (524)
+..+..++..++.......+.........+. .+...+..+....+..|.+| .+.|+++.|+.+.++.++++
T Consensus 371 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p--------~~~R~~~~g~~~~~~~~~~~ 442 (502)
T TIGR00887 371 GFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP--------TRYRSTAHGISAASGKAGAI 442 (502)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc--------hhHHHHHHHHHHHHhhhHHH
Confidence 7766666554443321110111111111111 12122233444555667776 47789999999999999999
Q ss_pred hhhhhhHhhccc-----------ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 009816 461 IGPLLTGYISAT-----------SWTAVFTMLMAAALISGLLLTRLVVAEVAAKFVES 507 (524)
Q Consensus 461 i~~~~~g~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
++|.+.+++.+. ++...|++.+++.+++.+.. +..+|+++++.+|
T Consensus 443 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~--~~lpEt~~~~lee 498 (502)
T TIGR00887 443 IGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT--LLIPETKGKSLEE 498 (502)
T ss_pred HHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh--eEeccCCCCCHHh
Confidence 999999998874 23456777776666654433 3346776655433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=284.65 Aligned_cols=376 Identities=14% Similarity=0.151 Sum_probs=286.2
Q ss_pred HHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHH
Q 009816 40 LIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAF 119 (524)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~ 119 (524)
+.+++++++...++...++...|.+.++ +|+++ .+.+++.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~------------------------------~g~s~-------~~~~~~~~~~ 54 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQS------------------------------LGESP-------LHMHMVIVSY 54 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH------------------------------hCcCH-------HHHHHHHHHH
Confidence 4455667777888888888888888888 88877 8999999999
Q ss_pred HHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhcccc
Q 009816 120 LSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGK 199 (524)
Q Consensus 120 ~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 199 (524)
.++..++.+++|+++||+|||++++.+.++.+++.+++.++ ++++.+++.|+++|++.+...+...+++.|++|+
T Consensus 55 ~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 129 (471)
T PRK10504 55 VLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-----GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR 129 (471)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH
Confidence 99999999999999999999999999999999999888886 8999999999999999999999999999999999
Q ss_pred ccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccC------
Q 009816 200 SKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESL------ 272 (524)
Q Consensus 200 ~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 272 (524)
++|+++.++.....++|..+||.+++.+. +.|||+.|++..++..+..+......|+.+.... +.+.....
T Consensus 130 ~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~ 207 (471)
T PRK10504 130 EQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTR--RFDLSGFLLLAVGM 207 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCC--CCChHHHHHHHHHH
Confidence 99999999999999999999999999888 5799999999887777666666665555432211 11100000
Q ss_pred ------CccccCCCcccc---------------cccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 273 ------SPKKIGEGVTQP---------------LLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPF 331 (524)
Q Consensus 273 ------~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (524)
..+.+....... ...+++... ++....++++||.++...+..++..........+.|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 286 (471)
T PRK10504 208 ATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNN-RALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPV 286 (471)
T ss_pred HHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCC-CCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 000000011 1111235789999988888888777777777788999
Q ss_pred HHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 009816 332 YVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFI 411 (524)
Q Consensus 332 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (524)
|++.. +|.++.+.++......++.+++.++.+++.||+++|+.+..+..+..+...++.......+.+......++
T Consensus 287 ~~~~~----~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (471)
T PRK10504 287 FLQIG----LGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFL 362 (471)
T ss_pred HHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 99876 79999999999998889888888999999999999999888777666665554432222333333344556
Q ss_pred HHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 412 TGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
.|++.+..++.......+.+|+ +.++.+.|+.++...+|..+|+.+.|.+.+.
T Consensus 363 ~g~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 363 QGMVNSTRFSSMNTLTLKDLPD--------NLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCCH--------HhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777763 6679999999999999999999999988776
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=280.94 Aligned_cols=365 Identities=22% Similarity=0.298 Sum_probs=284.7
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
++|+. .|.|++.++++.|+.+++++.|+++||+|.|+++..+.++.++++++...+. ..+++.+++.|++
T Consensus 68 ~~ws~-------~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa---~~~~~~~~~~R~l 137 (466)
T KOG2532|consen 68 YDWSS-------TEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAA---SIGFYLLLVLRFL 137 (466)
T ss_pred ecCCH-------HHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH---HhcchhhHHHHHH
Confidence 66666 9999999999999999999999999999999999999999999999999872 2455688999999
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-h-cCchhHHHHhHHHHHHHHHHHHHhcC
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-T-YGWGWSFVVPGLIIAFVGLIVFLFLP 255 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~-~gwr~~f~~~~~~~~~~~~~~~~~~~ 255 (524)
+|++.|..+|+...+...|.|++||++..++..++..+|.+++-+++|++. . +||+++|++.++++++..++.+++..
T Consensus 138 qGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 138 QGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred hHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999898888 4 79999999999999999888888888
Q ss_pred CCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009816 256 VNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSH 335 (524)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (524)
|+|.+++....+|.+..+..+..+. ..++...+++++++++.+|.+.+..++.....+.+..++|.|+++
T Consensus 218 d~P~~h~~is~~El~~I~~~k~~~~----------~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~ 287 (466)
T KOG2532|consen 218 DSPSKHPNISEKELKYIEKGKSEAH----------VKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKE 287 (466)
T ss_pred CCcccCCCCCHHHHHHHHhcccccc----------cCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8888866555444433221111110 011146789999999999999999999999999999999999999
Q ss_pred cccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhh--------HHH-HHHHHHHHHHHHHHHHhhcchhHHHHH
Q 009816 336 TAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDAR--------AIT-AASFMYCAIPALFFYRSYGHLSLALNI 406 (524)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (524)
. +|++..+.|++.++..+...+..+++|.++||+.+| |.. .++....++.++.+.+. ...+.+..+
T Consensus 288 V----L~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~-~~~~~~~a~ 362 (466)
T KOG2532|consen 288 V----LGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT-SDEHRLLAV 362 (466)
T ss_pred H----hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec-CCCcchHHH
Confidence 9 899999999999999999999999999999998652 222 22223333333333222 221222222
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhc-cc---ChhHHHHHHH
Q 009816 407 ALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYIS-AT---SWTAVFTMLM 482 (524)
Q Consensus 407 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~-~~---~~~~~~~~~~ 482 (524)
+++ ....+..+...........+.. ++..+..+|+.+.+..+.+.++|.+.|.+. +. .|+.+|.+.+
T Consensus 363 ~~l-~~~~~~~g~~~~Gf~~~~~~~a--------pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a 433 (466)
T KOG2532|consen 363 ILL-TIAIGLSGFNISGFYKNHQDIA--------PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAA 433 (466)
T ss_pred HHH-HHHHHHcccchhhhHhhhhhcc--------chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHH
Confidence 222 2222222222222222222211 477899999999999999999999999998 43 7999999999
Q ss_pred HHHHHHHHHHHHHH
Q 009816 483 AAALISGLLLTRLV 496 (524)
Q Consensus 483 ~~~~~~~~~~~~~~ 496 (524)
++.+++.++..++.
T Consensus 434 ~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 434 GILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHhchheeEee
Confidence 99888876655443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=277.50 Aligned_cols=394 Identities=37% Similarity=0.552 Sum_probs=277.9
Q ss_pred cccchhhHHHHHHHHHHHHHhhccccccc-ccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchh
Q 009816 32 FKNHQAIVLIVTFFAYTSYHAARKTTSIV-KSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTA 110 (524)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 110 (524)
.+|..+.++..++..++..+.++.+++.. +..+.+| .+... .
T Consensus 39 ~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~ed------------------------------l~~~~-------~ 81 (495)
T KOG2533|consen 39 LRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKED------------------------------LKLVG-------N 81 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccc------------------------------cchhh-------h
Confidence 34445566666677777888888777653 2223344 44444 8
Q ss_pred hHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHH
Q 009816 111 LLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVV 190 (524)
Q Consensus 111 ~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 190 (524)
+++.+.++++++++++.+++|.+.||++..+.+....+++++..++.... +|++.+++.|++.|+.++..+|...
T Consensus 82 ~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-----~s~~~~ialr~llGl~es~~wP~~~ 156 (495)
T KOG2533|consen 82 QLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-----HSFPGLIALRFLLGLFESGGWPGVV 156 (495)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHhcccchHHH
Confidence 99999999999999999999999999999999998888888888777764 9999999999999999999999999
Q ss_pred HHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-------hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCC
Q 009816 191 AVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-------TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGT 263 (524)
Q Consensus 191 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (524)
.+++.||.++||+..++++.+..++|.++|++++..+. ..||||.|++.++++++.+++.++++|+.|.+..-
T Consensus 157 ~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~f 236 (495)
T KOG2533|consen 157 AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWF 236 (495)
T ss_pred HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccc
Confidence 99999999999999999999999999999999998853 36899999999999999999999999999886533
Q ss_pred CCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 009816 264 DTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYL 343 (524)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 343 (524)
..++|+.....+.+.+. +.....+.++..+++.+++|.+|.+.++.++.....+++.+|+|.|+++. .|+
T Consensus 237 l~~~ek~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~----~~~ 306 (495)
T KOG2533|consen 237 LTDEEKELVVERLRESP------SGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSN----GGY 306 (495)
T ss_pred cchHHHHHHHHHHHhcc------CCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcC----CCc
Confidence 23222111100000000 00000113567789999999999999999999999999999999999985 689
Q ss_pred ChhhhhhHHHHHHHHHHhhhHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhh
Q 009816 344 SSEMAGNLSTLFDVGGVLGGILAGHISDR----LDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGP 419 (524)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (524)
+..++..+..+..++++++.+++|+++|| ..+|........+......+.... ...........+....+....
T Consensus 307 s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~--~~~~~~~~~~~~~~~~~~~~~ 384 (495)
T KOG2533|consen 307 SELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLA--AAVLPGAYGAFLIGPYGLIAT 384 (495)
T ss_pred ChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh--hccchHHhHHHHhcchhhHHH
Confidence 99999999999999999999999999999 455554444444443333222221 111222222222222333333
Q ss_pred hHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhh-hhHhhccc-ChhHHHHHHHHHHH
Q 009816 420 YALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPL-LTGYISAT-SWTAVFTMLMAAAL 486 (524)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~-~~g~l~~~-~~~~~~~~~~~~~~ 486 (524)
.+........... ++.+..++. ++.....+.++.++|. ..+..... .+...|....+.++
T Consensus 385 ~~~~~~w~s~~~~------g~~k~~~~~-~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~~~~ 446 (495)
T KOG2533|consen 385 AIIALSWTSANLA------GNTKALTTV-SAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVAACV 446 (495)
T ss_pred HHHHHhhcccccc------chHHhHHHH-hhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHHHHH
Confidence 4444444444443 333443333 3344444444444444 34433343 66667744444333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=287.07 Aligned_cols=393 Identities=17% Similarity=0.208 Sum_probs=274.7
Q ss_pred ccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhH
Q 009816 33 KNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALL 112 (524)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (524)
++.+|+.+..++++++.+.++....+...|.+.++ +|+++ .+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------------------------~~~s~-------~~~ 57 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGE------------------------------FGLTT-------VQA 57 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------hCCCH-------HHH
Confidence 35677888899999999999999999999998888 88877 899
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHH
Q 009816 113 GELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAV 192 (524)
Q Consensus 113 g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 192 (524)
+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.++++++ ++++.+++.|++.|++.+...+....+
T Consensus 58 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~ 132 (496)
T PRK03893 58 ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA-----PGYWTLFIARLVIGMGMAGEYGSSATY 132 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 899999999999999999999999999
Q ss_pred HhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 009816 193 VGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDES 271 (524)
Q Consensus 193 i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (524)
+.|++|+++|++++++...+..+|..++|.+++.+. .++||+.|++.++ .++..+.....+||.++....++..++.
T Consensus 133 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~- 210 (496)
T PRK03893 133 VIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL-PIIFALWLRKNLPEAEDWKEKHAGKAPV- 210 (496)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH-HHHHHHHHHHhCCCchhhhhhccccccc-
Confidence 999999999999999999999999999999999887 5799999987443 3333333444455543321111000000
Q ss_pred CCccccCCCcccccccchhhhhhhhh------hHHHHh----------------------------cCCCc---HHHHHH
Q 009816 272 LSPKKIGEGVTQPLLRRETKIEEKAV------GFIEAW----------------------------KIPGV---APFALC 314 (524)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----------------------------~~~~~---~~~~~~ 314 (524)
++.. +...+.+.+...... .....+ +.++. ......
T Consensus 211 ---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (496)
T PRK03893 211 ---RTMV----DILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVV 283 (496)
T ss_pred ---hhHH----HHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 0000 000000000000000 000000 00000 000111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 009816 315 LFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFY 394 (524)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 394 (524)
.+......+....++|.|+++. +|++..+.+.+.+...++.++++++.|++.||+++|+.+..+..+..+..+.+.
T Consensus 284 ~~~~~~~~~~~~~~lp~~l~~~----~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 359 (496)
T PRK03893 284 VLFAFLYSWPIQALLPTYLKTD----LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVF 359 (496)
T ss_pred HHHHHhccchHHHHHHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 1111111123457899999765 799999999999999999999999999999999999987776655444433332
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-C
Q 009816 395 RSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-S 473 (524)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~ 473 (524)
.. ...+.+......++.++...+..+.....+.+.+| ++.+++++|+.+....+|+.++|.+.|.+.|. +
T Consensus 360 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g 430 (496)
T PRK03893 360 AI-GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFD--------TEQRAAGLGFTYNVGALGGALAPILGALIAQRLD 430 (496)
T ss_pred hc-cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCC--------HHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC
Confidence 21 22232333333333333333334455566667666 36679999999999999999999999999998 8
Q ss_pred hhHHHHHHHHHHHHHH
Q 009816 474 WTAVFTMLMAAALISG 489 (524)
Q Consensus 474 ~~~~~~~~~~~~~~~~ 489 (524)
+...+...++.+.+..
T Consensus 431 ~~~~~~~~~~~~~~~~ 446 (496)
T PRK03893 431 LGTALASLSFSLTFVV 446 (496)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8877766554444333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=279.05 Aligned_cols=359 Identities=13% Similarity=0.068 Sum_probs=248.1
Q ss_pred chhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhH
Q 009816 35 HQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGE 114 (524)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 114 (524)
.|++.....+++.+..++|+..++++.|.+.+| ++.++ .+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~------------------------------~~~~~-------~~~~~ 54 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKT------------------------------FFPAG-------NEFAS 54 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------hCCCC-------CchHH
Confidence 445578888999999999999999999999998 77665 44433
Q ss_pred -HHHHH-----HHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHH--------HHHHHHHHHHH
Q 009816 115 -LDLAF-----LSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFY--------YYLVVQMLAGL 180 (524)
Q Consensus 115 -~~s~~-----~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~r~l~G~ 180 (524)
..+.. .++..+++++.|+++||+|||++++.+.++++++.++++++ ++++ .+++.|+++|+
T Consensus 55 ~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~l~~~R~l~G~ 129 (434)
T PRK15075 55 LMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFV-----PGYATIGLAAPLLVLLGRLLQGF 129 (434)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHHhhc
Confidence 23322 23335789999999999999999999999999999999997 7766 46899999999
Q ss_pred hhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh---------hcCchhHHHHhHHHHHHHHHHHH
Q 009816 181 FQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL---------TYGWGWSFVVPGLIIAFVGLIVF 251 (524)
Q Consensus 181 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~---------~~gwr~~f~~~~~~~~~~~~~~~ 251 (524)
+.+...+....+++|++|+++|++++++...+.++|..+++.+++.+. ++|||++|++.++.. +......
T Consensus 130 ~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~-~~~~~~~ 208 (434)
T PRK15075 130 SAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIV-PFIFLIR 208 (434)
T ss_pred cccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999998888888888877652 479999998754332 2211111
Q ss_pred HhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHHHH
Q 009816 252 LFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFA-LCLFFAKLVAYTFLYWLP 330 (524)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 330 (524)
...||+++.. +++ ++. +....++...++++.+... +..++.....+....+.|
T Consensus 209 ~~~~e~~~~~-----~~~-----~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 262 (434)
T PRK15075 209 RSLEETEEFL-----ARK-----HRP----------------SMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTP 262 (434)
T ss_pred HhcCCCHHHH-----Hhh-----hcc----------------ccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211000 000 000 0001122233444333332 223334455667788999
Q ss_pred HHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHHhhcchhHHHHHHHH
Q 009816 331 FYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALF-FYRSYGHLSLALNIALM 409 (524)
Q Consensus 331 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 409 (524)
.|+++. +|++..+.++......++.+++.++.|+++||++||+.+..+.....+.... +.......+........
T Consensus 263 ~~l~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (434)
T PRK15075 263 TFGKTV----LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVE 338 (434)
T ss_pred HHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 999987 7999999988888889999999999999999999999876654443322211 11111222222223333
Q ss_pred HHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhh-hhhhhhhhhhHhhccc-Ch
Q 009816 410 FITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGS-VGAAIGPLLTGYISAT-SW 474 (524)
Q Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~i~~~~~g~l~~~-~~ 474 (524)
++.+++.+...+.......+.+|+ +.|+++.|+.+.+.. +++.++|.+.|++.|. ++
T Consensus 339 ~~~~~~~g~~~~~~~~~~~e~~p~--------~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 339 LWLSFLYGSYNGAMVVALTEVMPA--------EVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHHHHHHhhHHHHHHHHCCC--------CccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 444555555555555666777764 567888888655544 4588899999999987 54
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=271.24 Aligned_cols=365 Identities=11% Similarity=0.017 Sum_probs=270.4
Q ss_pred HHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHHHHH
Q 009816 43 TFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSI 122 (524)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~~l~ 122 (524)
+.+..+...+....+.+.+|.+.++ +|.+. .+.++..+++.++
T Consensus 21 ~~~~~~~~~~~~~~~~p~l~~i~~~------------------------------~~~~~-------~~~~~~~s~~~~~ 63 (413)
T PRK15403 21 LILYDFAAYLTTDLIQPGIINVVRD------------------------------FNADV-------SLAPASVSLYLAG 63 (413)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHH------------------------------hCCCH-------HHHHHHHHHHHHH
Confidence 3444445666667777777777777 77777 8899999999999
Q ss_pred HHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhccccccc
Q 009816 123 YAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKR 202 (524)
Q Consensus 123 ~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r 202 (524)
+.++++++|+++||+|||++++.+.++++++.++++++ ++++.+++.|+++|++.+...+....++.|++|+++|
T Consensus 64 ~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~ 138 (413)
T PRK15403 64 GMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-----TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKG 138 (413)
T ss_pred HHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999997 8999999999999999887777778889999999999
Q ss_pred cceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCc
Q 009816 203 GLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGV 281 (524)
Q Consensus 203 ~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (524)
++++++......+|..+||.+++.+. +.|||+.|++.+++.++..+..++.+||+++..++ + .
T Consensus 139 ~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~-~-------~-------- 202 (413)
T PRK15403 139 IKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAV-P-------F-------- 202 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCC-C-------C--------
Confidence 99999999999999999999999888 46999999999988777766556667775431100 0 0
Q ss_pred ccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHh
Q 009816 282 TQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVL 361 (524)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 361 (524)
..++....++++++||.++...+..++.....+.+..+.|.++++. +|+++.+.++.......+.++
T Consensus 203 ---------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~----~g~s~~~~gl~~~~~~~~~~i 269 (413)
T PRK15403 203 ---------SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDA----GGMTTSQFAWTQVPVFGAVIV 269 (413)
T ss_pred ---------ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHh----cCCCHHHHHHHHHHHHHHHHH
Confidence 0001233567788999999888887777777778888899999987 799999999998888888888
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh--hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCC
Q 009816 362 GGILAGHISDRLDARAITAASFMYCAIPALFFYRS--YGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKG 439 (524)
Q Consensus 362 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (524)
+..+.+++.++..+++.......+..++..++... ....+.+..+...++.+++.+...+....... .+.
T Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~------ 341 (413)
T PRK15403 270 ANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSN------ 341 (413)
T ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccC------
Confidence 88888887655444443322222222222221110 01222323345556666666666555553221 111
Q ss_pred CccchhHHHHHHHhhhhhhhhhhhhhhHhhcccChhHHHHHHHHHHHH
Q 009816 440 NSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALI 487 (524)
Q Consensus 440 ~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~ 487 (524)
...+|++.++.+.....+..+++...+++.+.+-...|...++++.+
T Consensus 342 -~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 342 -NLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGV 388 (413)
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 12358999999999989999999999998877666666666555443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=286.69 Aligned_cols=380 Identities=16% Similarity=0.212 Sum_probs=299.7
Q ss_pred hHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHH
Q 009816 38 IVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDL 117 (524)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s 117 (524)
+++..++++.+...++....+...|.+.++ +|.+. .+.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------------------------------~g~s~-------~~~~~~~~ 44 (485)
T TIGR00711 2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGD------------------------------LGSSL-------SQVQWVIT 44 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------------cCCCh-------hhhhHHHH
Confidence 356677788888999999999999999888 78777 88999999
Q ss_pred HHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhcc
Q 009816 118 AFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWF 197 (524)
Q Consensus 118 ~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~ 197 (524)
.+.++..++.++.|+++||+|||++++++.++.+++.++++++ ++++.+++.|+++|++.+...+...+++.|++
T Consensus 45 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~ 119 (485)
T TIGR00711 45 SYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-----PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY 119 (485)
T ss_pred HHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred ccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc-----
Q 009816 198 GKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDES----- 271 (524)
Q Consensus 198 ~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 271 (524)
|+++|++++++...+..+|..+||.+++.+. +++||+.|++.+++.++..++.++.+|++++.... +.+....
T Consensus 120 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~~l~~~ 198 (485)
T TIGR00711 120 PPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASE-NFDFLGLLLLSV 198 (485)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccC-CCcHHHHHHHHH
Confidence 9999999999999999999999999999988 57999999998888877767677777764332211 1110000
Q ss_pred -------CCccccCCCcccc-cc--------------cchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 009816 272 -------LSPKKIGEGVTQP-LL--------------RRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWL 329 (524)
Q Consensus 272 -------~~~~~~~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (524)
...+.+..+...+ .. ..++..++++....+.+++|.++...+..++..+..+....++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (485)
T TIGR00711 199 GLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLL 278 (485)
T ss_pred HHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000 00 0000001111222467889999888888888888888888999
Q ss_pred HHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-hhcchhHHHHHHH
Q 009816 330 PFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYR-SYGHLSLALNIAL 408 (524)
Q Consensus 330 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 408 (524)
|.|+++. +|+++.++++......++.+++.++.|++.||+++|+.+..+..+..++...+.. ..+..+.+.....
T Consensus 279 p~~~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (485)
T TIGR00711 279 PLYLQQV----LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALP 354 (485)
T ss_pred HHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 9999987 7999999999999999999999999999999999999888877776666655542 2223344555556
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 409 MFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
.++.|++.+...++......+.+| ++.++++.|+.+..+.+|+.+|+.+.+.+.++
T Consensus 355 ~~l~g~g~~~~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 355 QFIRGFGMGCFFMPLTTIALSGLP--------PHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC--------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888887777777776666666 47789999999999999999999999998875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=288.48 Aligned_cols=424 Identities=13% Similarity=0.069 Sum_probs=277.3
Q ss_pred cchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHh
Q 009816 34 NHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLG 113 (524)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 113 (524)
+...+...++.++.+...++...++...|.+++++.+ ... ..+++++ .+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~-------~~~~~~~-------~~~~ 58 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVA---------------PQN-------LSESAAN-------SLLG 58 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcc---------------ccc-------ccccCCh-------hHHH
Confidence 4456666777778888888988888888877776311 000 0035554 8999
Q ss_pred HHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhcccc-------ccchhHHHHHHHHHHHHHhhhcch
Q 009816 114 ELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYW-------GNVHSFYYYLVVQMLAGLFQSTGW 186 (524)
Q Consensus 114 ~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~-------~~~~~~~~~~~~r~l~G~~~~~~~ 186 (524)
++.+.+.++..++++++|+++||+|||++++++.++++++.++++++.. .+.+.++.+++.|+++|++.|...
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~ 138 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLAS 138 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHh
Confidence 9999999999999999999999999999999999999988887775310 112346778899999999999999
Q ss_pred hhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh---------hcCchhHHHHhHHHHHHHHHHHHHhcCCC
Q 009816 187 PSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL---------TYGWGWSFVVPGLIIAFVGLIVFLFLPVN 257 (524)
Q Consensus 187 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~---------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~ 257 (524)
+...++++|++|+++|++++++.+.+..+|.++++.+++.+. .+|||+.|++.+++.++. ++..+++||+
T Consensus 139 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~-~~~~~~l~~s 217 (479)
T PRK10077 139 MLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLF-LMLLYFVPET 217 (479)
T ss_pred hHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHH-HHHHHcCCCC
Confidence 999999999999999999999999999999999988876553 358999999988777665 4456778988
Q ss_pred CCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHH-HhcCCCcH-----HHHHHH----HHHHHHHHHHHH
Q 009816 258 PESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIE-AWKIPGVA-----PFALCL----FFAKLVAYTFLY 327 (524)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~----~~~~~~~~~~~~ 327 (524)
|++...+++.++.....++..... + .+...++.....+. ..+.+..+ ...... +..........+
T Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (479)
T PRK10077 218 PRYLMSRGKQEQAEGILRKIMGNT-L----ATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLY 292 (479)
T ss_pred cHHHHHcCCHHHHHHHHHHHcCCh-h----HHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHH
Confidence 764322211111100000000000 0 00000000000000 00001110 011110 111111223345
Q ss_pred HHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcch-hHHHHH
Q 009816 328 WLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHL-SLALNI 406 (524)
Q Consensus 328 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 406 (524)
+.|.+.++ .|.+.....+.....++..+++.++.++++||++||+.+..+..+.+++.+.+....... ......
T Consensus 293 ~~p~i~~~-----~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~ 367 (479)
T PRK10077 293 YAPEIFKT-----LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 367 (479)
T ss_pred HHHHHHHH-----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 66777666 488877777777788889999999999999999999999888887777665554321111 111222
Q ss_pred HHHHHHHhhhhhh-hHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhc------cc-ChhHHH
Q 009816 407 ALMFITGMFVNGP-YALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYIS------AT-SWTAVF 478 (524)
Q Consensus 407 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~------~~-~~~~~~ 478 (524)
...++.+++.+.. .+.....+.+.+| ++.|+++.|+.+....++.++++.+.+.+. +. ++...|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p--------~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~ 439 (479)
T PRK10077 368 LSMLFYVAAFAMSWGPVCWVLLSEIFP--------NAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSY 439 (479)
T ss_pred HHHHHHHHHHhccccchhHHHhHhhCC--------hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHH
Confidence 2333344333332 2455677777776 367899999999999999999877766554 33 667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 009816 479 TMLMAAALISGLLLTRLVVAEVAAKFVE 506 (524)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
++.+++++++.++.+ +..+|++++..+
T Consensus 440 ~~~~~~~~~~~~~~~-~~~~e~~~~~~~ 466 (479)
T PRK10077 440 WIYGCMGVLAALFMW-KFVPETKGKTLE 466 (479)
T ss_pred HHHHHHHHHHHHHHH-hccccCCCCCHH
Confidence 777766666555443 334555554433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=267.92 Aligned_cols=345 Identities=17% Similarity=0.153 Sum_probs=268.6
Q ss_pred HHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHHHHHHHhh
Q 009816 47 YTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYAGG 126 (524)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~~l~~~~~ 126 (524)
.+........+.+..|.+.++ +|+++ .+.+++.+.+.++..++
T Consensus 14 ~~~~~~~~~~~~~~~p~~~~~------------------------------~g~s~-------~~~g~~~~~~~~~~~~~ 56 (385)
T TIGR00710 14 SILGPLGIDMYLPAFPEIAAD------------------------------LSTPA-------SIVQMTLTLYLLGFAAG 56 (385)
T ss_pred HHHHHHHHHHhcccHHHHHHH------------------------------hCCCH-------HHHHHHHHHHHHHHHHH
Confidence 344455556666677877777 78777 99999999999999999
Q ss_pred hhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhcccccccccee
Q 009816 127 MFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIM 206 (524)
Q Consensus 127 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 206 (524)
++++|+++||+|||+++..+.++.+++.+++.++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++
T Consensus 57 ~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (385)
T TIGR00710 57 QLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-----NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIY 131 (385)
T ss_pred HHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHH
Confidence 9999999999999999999999999999999886 89999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCccccc
Q 009816 207 GIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPL 285 (524)
Q Consensus 207 ~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (524)
++.+....+|..++|.+++.+. +++||+.|++.+++.++..+..++..||+++...+.
T Consensus 132 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 190 (385)
T TIGR00710 132 SILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI--------------------- 190 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC---------------------
Confidence 9999999999999999999887 579999999988887777666666666643321100
Q ss_pred ccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHH
Q 009816 286 LRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGIL 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 365 (524)
+.++....+++.+++|+++...+...+..........+.|.++++. +|.++.+.+.+.....++.++++++
T Consensus 191 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~g~~~~~~~~~~~~~~~~ 261 (385)
T TIGR00710 191 -----QISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI----MGVSPSVFGLLFALNIIAMIFGGFL 261 (385)
T ss_pred -----CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0001223456778899988877776666666777778889888876 7999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccc
Q 009816 366 AGHISDRLDARAITAASFMYCAIPALFFYRSY--GHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRA 443 (524)
Q Consensus 366 ~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (524)
.|++.||+++|+.+..+..+..+....+.... .............+.|++.+...+.......+..| +.
T Consensus 262 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---------~~ 332 (385)
T TIGR00710 262 NGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP---------HV 332 (385)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---------cc
Confidence 99999999999988777666555544443221 11223333444556677666666666665555443 45
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 444 LATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 444 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
++++.++.+.....++.+.+.+.+.+.+.
T Consensus 333 ~g~~~~~~~~~~~~~g~i~~~~~~~~~~~ 361 (385)
T TIGR00710 333 AGTASALFGTLRLVLGAIVGYLVSLIHGN 361 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 68999999888877666666666755443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=269.15 Aligned_cols=363 Identities=16% Similarity=0.096 Sum_probs=261.8
Q ss_pred HHHHHHHHHHHhhcccccccccc-cCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHH
Q 009816 41 IVTFFAYTSYHAARKTTSIVKST-LDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAF 119 (524)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~ 119 (524)
..+.+..++.++......+.+|. +.++ +|+++ .+.|++.+++
T Consensus 18 ~~l~~~~~~~~~~~~~~~~~l~~~i~~~------------------------------~g~s~-------~~~g~~~~~~ 60 (399)
T PRK05122 18 VSIVMFTFISYLTIGLPLAVLPGYVHDQ------------------------------LGFSA-------FLAGLVISLQ 60 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------------cCccH-------HHHHHHHHHH
Confidence 34455555555555555556664 4556 77777 9999999999
Q ss_pred HHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccc---cchhHHHHHHHHHHHHHhhhcchhhHHHHHhhc
Q 009816 120 LSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWG---NVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNW 196 (524)
Q Consensus 120 ~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~---~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~ 196 (524)
.+++.+++++.|+++||+|||++++.+.++.+++.+++.++... ...+++.+++.|+++|++.+...+...+++.|+
T Consensus 61 ~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~ 140 (399)
T PRK05122 61 YLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGR 140 (399)
T ss_pred HHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhh
Confidence 99999999999999999999999999999888877766553110 013677899999999999999999999999999
Q ss_pred cccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCcc
Q 009816 197 FGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPK 275 (524)
Q Consensus 197 ~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (524)
+|+++|++++++...+..+|.++|+.+++.+. ++||++.+++.+++.++. .+. .++.|+.... + +
T Consensus 141 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~-~-~-------- 206 (399)
T PRK05122 141 VGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLG-LLL---ARPRPAVPPV-K-G-------- 206 (399)
T ss_pred cChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH-HHH---HhcCCCCCCC-C-c--------
Confidence 99999999999999999999999999999887 579999988766554332 211 1222211100 0 0
Q ss_pred ccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHH
Q 009816 276 KIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLF 355 (524)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 355 (524)
+. .++++.++ +++.......+..+.......++|.|+.+. |.+ +.+......
T Consensus 207 -~~------------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~ 258 (399)
T PRK05122 207 -ER------------------LPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAAR-----GWD--GAALALTLF 258 (399)
T ss_pred -cc------------------hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccc--cchHHHHHH
Confidence 00 00111121 112222223333444555667888887764 553 456666778
Q ss_pred HHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccc
Q 009816 356 DVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHS 435 (524)
Q Consensus 356 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (524)
.++.++++++.|++.||+++|+.+..+..+..++...+.. .++.+..++..++.|++.+..++.......+..|
T Consensus 259 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~--- 332 (399)
T PRK05122 259 GVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWL---APSPWMALIGAALTGFGFSLVFPALGVEAVKRVP--- 332 (399)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC---
Confidence 8888999999999999999999887776666655544433 2344455566677888877777766666666665
Q ss_pred cCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHH
Q 009816 436 SLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 436 ~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~ 493 (524)
++.+|++.|+.+....+|..++|.+.|++.+. +|+..+++.+++.+++.++..
T Consensus 333 -----~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 333 -----PQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999887 999999888877776655544
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=287.65 Aligned_cols=411 Identities=14% Similarity=0.080 Sum_probs=269.5
Q ss_pred hhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCC-CCCCCchhhHhHH
Q 009816 37 AIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAP-FNGSDGTALLGEL 115 (524)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~g~~ 115 (524)
+...+++.++.+...++...++...+.+..+ ++.+. .+.+.+..+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 76 (481)
T TIGR00879 27 ALLSLIAAIGGLMFGYDTGVIGGALALPAFE------------------------------FKFTSANSDSYSSSLWGLV 76 (481)
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhcHHHH------------------------------HhcCCcccCCCChhHHHHH
Confidence 3334444455556667777777777776665 22220 1111234899999
Q ss_pred HHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhh
Q 009816 116 DLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGN 195 (524)
Q Consensus 116 ~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~ 195 (524)
.+++.++..++++++|+++||+|||++++++.++.+++.+++.++ ....+++.+++.|+++|++.+...+...+++.|
T Consensus 77 ~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~ 154 (481)
T TIGR00879 77 VSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA--AFALSVEMLIVGRVLLGIGVGIASALVPMYLSE 154 (481)
T ss_pred HHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhHHHhHHHHHHHc
Confidence 999999999999999999999999999999999999999888653 112456789999999999999999999999999
Q ss_pred ccccccccceehhhhhhhhhHHHHHHHHH---HHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 009816 196 WFGKSKRGLIMGIWNAHTSIGNITGSLVA---SALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDES 271 (524)
Q Consensus 196 ~~~~~~r~~~~~~~~~~~~~G~~ig~~l~---~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (524)
++|+++|++++++...+..+|..+++.++ .... ..+||+.|++.++..+ ..++..+++||+|+....+++.++..
T Consensus 155 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ 233 (481)
T TIGR00879 155 IAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAG-LLFLGLFFLPESPRWLVGKGRVEEAR 233 (481)
T ss_pred cCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH-HHHHHHhcCCCChHHHHHcCChHHHH
Confidence 99999999999999999999999999998 5544 4699999999555444 44556667888765321111111100
Q ss_pred CCccc--cCCCcccccccc--------hhhhhhhhhhHHHHhcC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009816 272 LSPKK--IGEGVTQPLLRR--------ETKIEEKAVGFIEAWKI------PGVAPFALCLFFAKLVAYTFLYWLPFYVSH 335 (524)
Q Consensus 272 ~~~~~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (524)
....+ ..+.......+. ..+.+.....+.+.++. +.++...+..+...........+.|.++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (481)
T TIGR00879 234 KSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN 313 (481)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH
Confidence 00000 000000000000 00000001112222221 111222222222222233445667777766
Q ss_pred cccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh--hcchh-----HHHHHHH
Q 009816 336 TAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRS--YGHLS-----LALNIAL 408 (524)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~ 408 (524)
.|++..+.+.......++.+++.++.+++.||++||+.+..+..+..++.+.+... ....+ ....+..
T Consensus 314 -----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (481)
T TIGR00879 314 -----AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVF 388 (481)
T ss_pred -----cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHH
Confidence 58888888888889999999999999999999999999888776666655544321 11110 2222222
Q ss_pred HHHHHhhhhhh-hHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHH
Q 009816 409 MFITGMFVNGP-YALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAAL 486 (524)
Q Consensus 409 ~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~ 486 (524)
..+.+.+.+.. .+.......+.+| ++.++++.|+.+...++|.+++|.+.+++.+. ++...|++.+++++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p--------~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~ 460 (481)
T TIGR00879 389 ILLFIAFFAMGWGPVPWVIVSEIFP--------LSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNV 460 (481)
T ss_pred HHHHHHHHHccccCeehhhhhccCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHH
Confidence 22333222222 2333444466665 36789999999999999999999999999887 88888888887777
Q ss_pred HHHHHHH
Q 009816 487 ISGLLLT 493 (524)
Q Consensus 487 ~~~~~~~ 493 (524)
++.++..
T Consensus 461 ~~~i~~~ 467 (481)
T TIGR00879 461 LGLIFVY 467 (481)
T ss_pred HHHHHHh
Confidence 6665554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=265.65 Aligned_cols=347 Identities=12% Similarity=0.023 Sum_probs=259.5
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
.+.+++.+.+.+++.++++++|+++||+|||++++++.++.+++.+++.++ .+. ++.|+++|++.+...|+.
T Consensus 38 ~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-----~~~---~~~r~l~G~~~a~~~pa~ 109 (393)
T PRK11195 38 WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-----IHP---LLAYGLVGIGAAAYSPAK 109 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999988887775 443 788999999999999999
Q ss_pred HHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEED 269 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (524)
.+++.|++|+++|++++++.+....+|.++||.+++++.++.|+..+.+.+...++. ++..+.+||++++.+..+.+.
T Consensus 110 ~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~- 187 (393)
T PRK11195 110 YGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQSWNP- 187 (393)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccCCCH-
Confidence 999999999999999999999999999999999999998767888887766544333 445566776543221110000
Q ss_pred ccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhh
Q 009816 270 ESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAG 349 (524)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 349 (524)
....++....++.++++|.++.......+.+.........+|.|+++. +|.++.+.|
T Consensus 188 -------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----lg~s~~~~G 244 (393)
T PRK11195 188 -------------------IALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA----LGITLNQPA 244 (393)
T ss_pred -------------------HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCChhHHH
Confidence 000011122345678888877655555555555556667778888887 799999999
Q ss_pred hHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 009816 350 NLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSA 429 (524)
Q Consensus 350 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (524)
++....+++.++++++.+++.||.++++.+..+.. .+.....+.. ..+.+...+..++.|++.+...++..+...+
T Consensus 245 ~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~---~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~ 320 (393)
T PRK11195 245 YLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMAL---QHSLLPAYPLLILIGALGGFFVVPMNALLQH 320 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHH---HhHHHHHHHHHHHHHHhhhhhhhhHHHHHHh
Confidence 99999999999999999999999888877666543 2222222211 2344445556667788777766666666655
Q ss_pred hhcccccCCCCcc-chhHHHHHHHhhhhhhhhhhhhhhHhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009816 430 DLGTHSSLKGNSR-ALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVVAEVA 501 (524)
Q Consensus 430 ~~~~~~~~~~~~~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (524)
. ++ ++ .+|++.++.+...+++..++..+.+.+...+.+..+++.+...+++..+...++.+++.
T Consensus 321 ~-~~-------~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK11195 321 R-GH-------VLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMALLWRWHRRN 385 (393)
T ss_pred h-Cc-------ccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 32 13 36999999999999999999999997765577777877777666666666655544443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=271.82 Aligned_cols=347 Identities=26% Similarity=0.417 Sum_probs=273.2
Q ss_pred HHHHHHHHhhccccccccc-ccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHHHHH
Q 009816 44 FFAYTSYHAARKTTSIVKS-TLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSI 122 (524)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~~l~ 122 (524)
+++.+...++...+.+..| .+.++ +|++. .+.+++.+++.++
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~s~-------~~~~~~~~~~~~~ 44 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEE------------------------------LGLSP-------SQIGLLFSAFFLG 44 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCC------------------------------STTTS-------HCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc------------------------------cCCCH-------HHHHHHHHHHHHH
Confidence 4556666667777777777 77777 88887 9999999999999
Q ss_pred HHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhccccccc
Q 009816 123 YAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKR 202 (524)
Q Consensus 123 ~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r 202 (524)
..+++++.|+++||+|||++++.+.++.+++.++..++ ++++.+++.|++.|++.+...+...+++.|++|+++|
T Consensus 45 ~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~ 119 (352)
T PF07690_consen 45 SALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-----SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEER 119 (352)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCH
T ss_pred HHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-----hhHHHHhhhccccccccccccccccccccccchhhhh
Confidence 99999999999999999999999999999996666665 6777999999999999999999999999999999999
Q ss_pred cceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCc
Q 009816 203 GLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGV 281 (524)
Q Consensus 203 ~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (524)
++++++.....++|.+++|.+++.+. .++||+.|++.+++.++..++...+++++++++..+++.+++
T Consensus 120 ~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~----------- 188 (352)
T PF07690_consen 120 GRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE----------- 188 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT-----------
T ss_pred hhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccc-----------
Confidence 99999999999999999999999998 679999999999988887665556666554443322211110
Q ss_pred ccccccchhhhhhhhh-hHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-hhhhhhHHHHHHHHH
Q 009816 282 TQPLLRRETKIEEKAV-GFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLS-SEMAGNLSTLFDVGG 359 (524)
Q Consensus 282 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~ 359 (524)
++.++... .++...++|.+|......++..+.......++|.|+.+. +|++ ..+.+....+..+..
T Consensus 189 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~ 256 (352)
T PF07690_consen 189 --------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEV----LGFSGPSQAGLLFSIFGIVG 256 (352)
T ss_dssp ----------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHCCTHHHHHHHHHHHHHHH
T ss_pred --------cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhc----cCCCHHHHHHHHHHHHHHHH
Confidence 00001111 245667777777555555666667777889999997776 7899 789999999999999
Q ss_pred HhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCC
Q 009816 360 VLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKG 439 (524)
Q Consensus 360 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (524)
++++++.+++.||+++++..........+..+.+.......+..+.+...++.|++.+...+.......+..|
T Consensus 257 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------- 329 (352)
T PF07690_consen 257 IIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVP------- 329 (352)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCH-------
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------
Confidence 9999999999999998877766666665555554432223345566667778898888888888899888887
Q ss_pred CccchhHHHHHHHhhhhhhhhhhh
Q 009816 440 NSRALATVTAIIDGTGSVGAAIGP 463 (524)
Q Consensus 440 ~~~~~g~~~g~~~~~~~~g~~i~~ 463 (524)
++.+|++.|+.+...+++..++|
T Consensus 330 -~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 330 -PEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHCC
Confidence 47789999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=269.29 Aligned_cols=368 Identities=14% Similarity=0.094 Sum_probs=276.4
Q ss_pred ccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhH
Q 009816 33 KNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALL 112 (524)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (524)
++..+..+..+++.++...+.+...+...|.++++ +|+++ .+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~------------------------------~~~s~-------~~~ 63 (438)
T PRK10133 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQA------------------------------FTLTN-------FQA 63 (438)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------hCCCH-------HHH
Confidence 34455666777778888888889999999999888 88877 999
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHH---hccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 113 GELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLY---GIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 113 g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+++ ..+ ++++.+++.|+++|+|.+...+..
T Consensus 64 gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a-----~~~~~ll~~r~l~G~g~g~~~~~~ 138 (438)
T PRK10133 64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI-----MNYTLFLVGLFIIAAGLGCLETAA 138 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999876 344 899999999999999999999999
Q ss_pred HHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh--h-------------------------cCchhHHHHhHHH
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL--T-------------------------YGWGWSFVVPGLI 242 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~--~-------------------------~gwr~~f~~~~~~ 242 (524)
..++.|+.++++|.+.+++.+..+.+|..++|.++..+. . .+||++|+....+
T Consensus 139 ~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v 218 (438)
T PRK10133 139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAI 218 (438)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887777777899999999999999999876543 0 2566667643333
Q ss_pred HHHHHH-HHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHH
Q 009816 243 IAFVGL-IVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLV 321 (524)
Q Consensus 243 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (524)
..+..+ +....+||.++++ +.+++ . .+.....++++++|.++...+..++....
T Consensus 219 ~~~~~~~~~~~~~p~~~~~~---~~~~~-------~---------------~~~~~~~~~ll~~~~~~~~~l~~~~~~~~ 273 (438)
T PRK10133 219 VLLVALLIMLTKFPALQSDN---HSDAK-------Q---------------GSFSASLSRLARIRHWRWAVLAQFCYVGA 273 (438)
T ss_pred HHHHHHHHHHhcCCCCCccc---ccccc-------c---------------cchhhhHHHHHhCchHHHHHHHHHHHHHH
Confidence 332222 2222233321110 00000 0 00112245678899888777777777777
Q ss_pred HHHHHHHHHHHH-hhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcch
Q 009816 322 AYTFLYWLPFYV-SHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHL 400 (524)
Q Consensus 322 ~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (524)
......|.+.|+ ++. +|+++.++++.+....++.++++++.+++.||+++|+.+..+..+..+..++... .+
T Consensus 274 ~~~~~~~~~~~l~~~~----~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~-~~-- 346 (438)
T PRK10133 274 QTACWSYLIRYAVEEI----PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-AG-- 346 (438)
T ss_pred HHHHHHHHHHHHhhhc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-cC--
Confidence 777778888885 555 7999999999999999999999999999999999999887776665544433332 11
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-C-hhHHH
Q 009816 401 SLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-S-WTAVF 478 (524)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-~~~~~ 478 (524)
+. ..+..+.+.|++.+..++...+...+..+. ..+++.++.. ...+|+.++|++.|.+.|. | .+..|
T Consensus 347 ~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~---------~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~ 415 (438)
T PRK10133 347 GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ---------DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAE 415 (438)
T ss_pred Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccch---------hhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHH
Confidence 22 234556778999999999999988887753 3456667665 4557899999999999887 5 56666
Q ss_pred HHHHHHH
Q 009816 479 TMLMAAA 485 (524)
Q Consensus 479 ~~~~~~~ 485 (524)
++...+.
T Consensus 416 ~v~~~~~ 422 (438)
T PRK10133 416 LIPALCF 422 (438)
T ss_pred HHHHHHH
Confidence 6544433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=268.70 Aligned_cols=328 Identities=16% Similarity=0.143 Sum_probs=258.0
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
.+.|++.+++.++..++++++|+++||+|||++++.+.++.+++.++..++......+++.+++.|++.|++.+...+..
T Consensus 34 ~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 113 (365)
T TIGR00900 34 SVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAY 113 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999998888888877510001299999999999999999999999
Q ss_pred HHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEE 268 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (524)
.+++.|++|+++|++++++.+.+..+|.+++|.+++.+. ..|||+.|++.++..++..+..+...+++++..+. + +
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~- 190 (365)
T TIGR00900 114 QAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEI-Q-A- 190 (365)
T ss_pred HHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccc-c-c-
Confidence 999999999999999999999999999999999999987 57999999987776555433333322211111000 0 0
Q ss_pred cccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHhhcccCCCCCChhh
Q 009816 269 DESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFL-YWLPFYVSHTAVDGKYLSSEM 347 (524)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~ 347 (524)
. +++..++....++..+++|.++...+..++......... .+.|.|.++. +|.++.+
T Consensus 191 ----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 248 (365)
T TIGR00900 191 ----L--------------SNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY----LGRGSTH 248 (365)
T ss_pred ----c--------------chhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----hCCchHH
Confidence 0 000011123345667888988887777777766666665 7889999886 6999999
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 009816 348 AGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAV 427 (524)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 427 (524)
.+.+.....++.+++.++.+++.||.++++.+..+..+.++....+... .. +.+...+..++.|++.+...+......
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~ 326 (365)
T TIGR00900 249 YGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT-PP-NFPLFLVLWFAIGVGYGPINVPQGTLL 326 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-ch-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998877665555555444332 11 355566677788888888888888888
Q ss_pred HhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 428 SADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 428 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
.+..| ++.++++.|+.+....++..++|.+.|++.|.
T Consensus 327 ~~~~~--------~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 327 QRRVP--------AELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHhCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877 37789999999999999999999999998774
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=284.91 Aligned_cols=366 Identities=17% Similarity=0.213 Sum_probs=264.2
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
.+.+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.+++ ++++.+++.|++.|++.+...+..
T Consensus 127 ~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~r~l~G~~~~~~~~~~ 201 (505)
T TIGR00898 127 WKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS-----PNYTVFLVFRLLVGMGIGGIWVQA 201 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHhhccchHHHH
Confidence 889999999999999999999999999999999999999999999999997 899999999999999999999999
Q ss_pred HHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEED 269 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (524)
..++.|++|+++|+++.++...+..+|.+++|.+++.+.+ ||+.|++.+++.++..+ ..+++||+|++...+++.++
T Consensus 202 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--wr~~~~~~~i~~~~~~~-~~~~~~esp~~l~~~~~~~~ 278 (505)
T TIGR00898 202 VVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD--WRWLQLAVSLPTFLFFL-LSWFVPESPRWLISQGRIEE 278 (505)
T ss_pred HHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHH-HHHhcCCChHHHHHCCCHHH
Confidence 9999999999999999999999999999999999877654 99999998887776644 44778998876433332222
Q ss_pred ccCCccc----cCCCccccc--c--cchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009816 270 ESLSPKK----IGEGVTQPL--L--RRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGK 341 (524)
Q Consensus 270 ~~~~~~~----~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (524)
..+..++ ......... . +++...++++..+++++++|.++...+...+.++......+.++.+..+ .
T Consensus 279 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 353 (505)
T TIGR00898 279 ALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGN-----L 353 (505)
T ss_pred HHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccc-----c
Confidence 1110000 000000000 0 0000011112467788899988777666655544444333444444443 3
Q ss_pred CCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhH
Q 009816 342 YLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYA 421 (524)
Q Consensus 342 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (524)
+.+.. ......++..+++.++.+++.||+|||+.+..+.++.+++.+++... +....+......++.+++....++
T Consensus 354 ~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 429 (505)
T TIGR00898 354 GGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV-PVDLYFLRTALAVLGKFGITSAFQ 429 (505)
T ss_pred CCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHHHH
Confidence 44433 33345567788899999999999999999888877777666555443 222223444455556666667777
Q ss_pred HHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009816 422 LITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVVAEVA 501 (524)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (524)
....+..+.+|+ +.|+++.|+.+.+..+|++++|.+.+ +.+.++...+.+.+++.+++.++..+ .+|++
T Consensus 430 ~~~~~~~e~~p~--------~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--lpet~ 498 (505)
T TIGR00898 430 MVYLYTAELYPT--------VVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGILTLF--LPETK 498 (505)
T ss_pred HHHHHhcccccH--------HHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHc--CcCCC
Confidence 777888888874 67799999999999999999999998 55556666777777766666555443 24544
Q ss_pred hh
Q 009816 502 AK 503 (524)
Q Consensus 502 ~~ 503 (524)
++
T Consensus 499 ~~ 500 (505)
T TIGR00898 499 GV 500 (505)
T ss_pred CC
Confidence 43
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=263.62 Aligned_cols=339 Identities=17% Similarity=0.180 Sum_probs=256.6
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHH-HHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLT-VGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQM 176 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~ 176 (524)
+|+++ .+.|++.+.+.+...+.+++.|+++||+||||.++ .+.++..++.++++++ ++++.+++.|+
T Consensus 28 ~g~s~-------~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~ 95 (375)
T TIGR00899 28 VRARP-------AMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN-----RNYFLLLVLGV 95 (375)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc-----chHHHHHHHHH
Confidence 78777 99999999999999999999999999999988755 4566666777788886 89999999999
Q ss_pred HHHHhhhcchhhHHHHHhhccccccccce--ehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHh
Q 009816 177 LAGLFQSTGWPSVVAVVGNWFGKSKRGLI--MGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLF 253 (524)
Q Consensus 177 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~ 253 (524)
+.|.+.+...|...+++.|+.|+++|++. .+....+.++|.++||++++.+. .+|||+.|++.+++.++..++.+++
T Consensus 96 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~ 175 (375)
T TIGR00899 96 LLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLF 175 (375)
T ss_pred HHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 99988888888888999999887777654 57788888999999999999887 5799999999988877777777777
Q ss_pred cCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 254 LPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYV 333 (524)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (524)
+||.|++...++ . ..+.++.+++|+++......++..........++|.|+
T Consensus 176 ~~~~~~~~~~~~-------~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (375)
T TIGR00899 176 LPSYPRGAPGAL-------T----------------------RLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLI 226 (375)
T ss_pred CCCcccCccccc-------C----------------------cchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 887654321100 0 00112345667776665555555554555667788888
Q ss_pred hhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 009816 334 SHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITG 413 (524)
Q Consensus 334 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 413 (524)
++. +|.++.+.+.+.....+..+++.++.|++.||+++|+.+..+.....+....... .++.+.......+.|
T Consensus 227 ~~~----~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g 299 (375)
T TIGR00899 227 IHE----LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA---DNSLWALLMLQLLNA 299 (375)
T ss_pred HHH----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 776 7999999998887777778888999999999999999877665544433322221 234444455556667
Q ss_pred hhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHH
Q 009816 414 MFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~ 492 (524)
++.+...+.......+..| +.++++.++.+...++|..++|.+.|++.+. +|+..|++.+++.+++.++.
T Consensus 300 ~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 300 IFIGILAGIGMLYFQDLMP---------GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHHHHHHHhCc---------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 7766666666666655544 3357899999999999999999999999887 89999988887776665554
Q ss_pred H
Q 009816 493 T 493 (524)
Q Consensus 493 ~ 493 (524)
.
T Consensus 371 ~ 371 (375)
T TIGR00899 371 L 371 (375)
T ss_pred h
Confidence 3
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=273.96 Aligned_cols=354 Identities=18% Similarity=0.170 Sum_probs=261.4
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+.......++++.+++.|++.|++.+...++.
T Consensus 52 ~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 131 (417)
T PRK10489 52 LQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTAL 131 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999988887777665542100012678999999999999998888999
Q ss_pred HHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEE 268 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (524)
.+++.|++|+++|+++.++.....++|..+||.+++.+. ..+|++.|++.++..++. ++..+.+|+.++++..++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~--- 207 (417)
T PRK10489 132 LAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFIT-LLPLLRLPALPPPPQPRE--- 207 (417)
T ss_pred hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHhCCCCCCCCcccc---
Confidence 999999999999999999999999999999999999887 568999999877665554 444555665432210000
Q ss_pred cccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhh
Q 009816 269 DESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMA 348 (524)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 348 (524)
+ ..++....++..+++|.++...+..++... ......++|.|.++. +|.++.+.
T Consensus 208 --------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~----~g~~~~~~ 261 (417)
T PRK10489 208 --------------H-------PLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEV----WQMGAAQI 261 (417)
T ss_pred --------------c-------chHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhc----cCCChhHh
Confidence 0 000112234556777776655554443332 345677899999986 79999999
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 009816 349 GNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVS 428 (524)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (524)
+++.+...++.+++.++.+++.||.++++.+..+..+..+..+.+.. .++.+...+..++.|++.+...+...+.+.
T Consensus 262 g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 338 (417)
T PRK10489 262 GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL---MPMWILAVLCLALFGYLSAISSLLQYTLLQ 338 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999977777766666555544443322 234445556666677766655555566667
Q ss_pred hhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009816 429 ADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRLVVAEVAAKFV 505 (524)
Q Consensus 429 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
+..| ++.+|++.|+.+....+|..+||.+.|++.+. ++...+...+++.++..++... ..++.|++++
T Consensus 339 ~~~p--------~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 407 (417)
T PRK10489 339 TQTP--------DEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLL-VLGELRRFRQ 407 (417)
T ss_pred hhCC--------HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH-hccccccccc
Confidence 7666 36789999999999999999999999999998 7777777776665554444432 3344444333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=269.37 Aligned_cols=379 Identities=25% Similarity=0.331 Sum_probs=279.4
Q ss_pred ccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhH
Q 009816 33 KNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALL 112 (524)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (524)
++++|..+...++.++....+....+...|.+.++ +|+++ .+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~-------~~~ 54 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAE------------------------------WGLDP-------VQL 54 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhc------------------------------cCCCH-------HHH
Confidence 45667777777778888888888888888888888 77777 899
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHH
Q 009816 113 GELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAV 192 (524)
Q Consensus 113 g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 192 (524)
+++.+.+.++..++.++.|+++||+|||+.+..+.++.+++.+++.++ ++++.+++.|++.|++.+...+...++
T Consensus 55 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~ 129 (398)
T TIGR00895 55 GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA-----TNVTQLLILRFLAGLGLGGLMPNLNAL 129 (398)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc-----cchHHHHHHHHHHhcccccchhhHHHH
Confidence 999999999999999999999999999999999999999999998886 899999999999999999999999999
Q ss_pred HhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 009816 193 VGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDES 271 (524)
Q Consensus 193 i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (524)
+.|++|+++|++++++...+..+|..+++.+++.+. ..|||+.|++.+++.++..++.+.++||+++....++.++...
T Consensus 130 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (398)
T TIGR00895 130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRR 209 (398)
T ss_pred HHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHH
Confidence 999999999999999999999999999999998887 5799999999877777776777777887764322211111000
Q ss_pred C---CccccCCCcccccccchhhhhhhhhhHHHHhcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCh
Q 009816 272 L---SPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKI---PGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSS 345 (524)
Q Consensus 272 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 345 (524)
. ...+...+..+...+.+.+.+..+...+..+++ +..+.+.+..++..........++|.+.++ +|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~ 284 (398)
T TIGR00895 210 IVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE-----LGFSL 284 (398)
T ss_pred HHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCH
Confidence 0 000000000000000000000011111222222 223333444445555666677788865555 58999
Q ss_pred hhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHH
Q 009816 346 EMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITT 425 (524)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (524)
.+.+.......++.+++.++.+++.||+++|+... ...+..+...++.. ...+.+......++.|++.+...+....
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 361 (398)
T TIGR00895 285 SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGS--TLFSPTLLLLLGAIAGFFVNGGQSGLYA 361 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999884433 33333333322222 1234455566777888888888888888
Q ss_pred HHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhh
Q 009816 426 AVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYI 469 (524)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 469 (524)
...+.+| ++.++++.|+.+.+..+|..++|.+.|++
T Consensus 362 ~~~~~~~--------~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 362 LMALFYP--------TAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHhhcCC--------HHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 8888877 37789999999999999999999999875
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=262.58 Aligned_cols=349 Identities=15% Similarity=0.127 Sum_probs=256.5
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHh---ccccccchhHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYG---IGYWGNVHSFYYYLVV 174 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~ 174 (524)
+|+++ .+.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++.+++. .. .++++.+++.
T Consensus 43 ~g~s~-------~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~ 111 (402)
T TIGR00897 43 LGLSP-------QQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLG----HANYPLILLF 111 (402)
T ss_pred hCCCH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc----CccHHHHHHH
Confidence 77777 9999999999999999999999999999999999999999988876553 22 2578888999
Q ss_pred HHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHH-HHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHH
Q 009816 175 QMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGN-ITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFL 252 (524)
Q Consensus 175 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~ 252 (524)
|++.|++.+...+...+.+.+++|+++|++++|+.+.+.++|. +++|++++.+. .+||+..++.......+..++..+
T Consensus 112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 191 (402)
T TIGR00897 112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALF 191 (402)
T ss_pred HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888888888889999999999999999999999997 57899988877 578776666544433333334444
Q ss_pred hcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 253 FLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFY 332 (524)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (524)
+.++.++.... + + + . +.++....++.++++|.++...+..++.....+...++.|.|
T Consensus 192 ~~~~~~~~~~~-~-~-----~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 248 (402)
T TIGR00897 192 SNKDIFTPQHM-Q-T-----R--E--------------KFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMF 248 (402)
T ss_pred ccCCCCCcccc-c-C-----C--c--------------chhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443221100 0 0 0 0 000112235578899999888877777777788888999999
Q ss_pred HhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHH-HHHHHHHHHHHHHHHhh--cchhHHHHHHHH
Q 009816 333 VSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITA-ASFMYCAIPALFFYRSY--GHLSLALNIALM 409 (524)
Q Consensus 333 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 409 (524)
+++ +|+++.+.+.+.....++.++++++.|+++||++||+.+. ...+...+....+.... ...+.+...+..
T Consensus 249 ~~~-----~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (402)
T TIGR00897 249 VAE-----LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIA 323 (402)
T ss_pred HHH-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence 876 5999999999888899999999999999999999888653 22222322222222111 122344445566
Q ss_pred HHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHH
Q 009816 410 FITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALIS 488 (524)
Q Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 488 (524)
++.|++.+...+ ......+ .+ ++.+|++.|+.+....++..++|.+.|.+.|. |+...+++.+++.+++
T Consensus 324 ~~~G~~~~~~~~-~~~~~~~-~~--------~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~ 393 (402)
T TIGR00897 324 IALGIFLAGYVP-LAAVFPT-LA--------PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVS 393 (402)
T ss_pred HHHHHHHHHHHH-HHHHHHh-hC--------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 667776655433 3333332 33 35689999999999999999999999999998 8889999888887776
Q ss_pred HHHHHHH
Q 009816 489 GLLLTRL 495 (524)
Q Consensus 489 ~~~~~~~ 495 (524)
.++..++
T Consensus 394 ~~~~~~~ 400 (402)
T TIGR00897 394 AFLTAFI 400 (402)
T ss_pred HHHHHHh
Confidence 6665543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=262.77 Aligned_cols=356 Identities=15% Similarity=0.193 Sum_probs=264.1
Q ss_pred HHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHH
Q 009816 40 LIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAF 119 (524)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~ 119 (524)
+..++++.+..........+..|.+.++ +|+++ .++|++.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~------------------------------~~~s~-------~~~G~~~s~~ 50 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQ------------------------------EHLPT-------WQVGVVSSSY 50 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH------------------------------cCCCH-------HHHHHHHHHH
Confidence 3444566666777778888888888888 78777 9999999999
Q ss_pred HHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhcccc
Q 009816 120 LSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGK 199 (524)
Q Consensus 120 ~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 199 (524)
.+++.+++++.|+++||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+...+...+.+.+..++
T Consensus 51 ~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~ 125 (381)
T PRK03633 51 FTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM-----VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS 125 (381)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999999987 8999999999999999999889888888899999
Q ss_pred ccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCC
Q 009816 200 SKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGE 279 (524)
Q Consensus 200 ~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (524)
++|++++++...+.++|..+||.+++.+....++..++..+.+.... +... +.+..++.. + + +
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~-~---~-~---------- 188 (381)
T PRK03633 126 RNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLAAI-LPLL-FTRILNQQA-E---N-H---------- 188 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHH-HHHH-HhcccCCCC-C---C-C----------
Confidence 99999999999999999999999999887533232333323222221 1121 212111110 0 0 0
Q ss_pred CcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHH
Q 009816 280 GVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGG 359 (524)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 359 (524)
+..+.++.+++|.++......+...........++|.|+++ .|.++.+.+.+.+...++.
T Consensus 189 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-----~g~s~~~~g~~~~~~~~~~ 248 (381)
T PRK03633 189 ---------------DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-----QGMSDASIGFWMALLVSAG 248 (381)
T ss_pred ---------------CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHH
Confidence 00113456778877765444444444555667789999987 4899999999999999999
Q ss_pred HhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCC
Q 009816 360 VLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKG 439 (524)
Q Consensus 360 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (524)
+++++..|++.||+++|+.+..+.....++...+. . . ........+.|++.....+.......+..++
T Consensus 249 ~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~-~--~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~------ 316 (381)
T PRK03633 249 ILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---S-Q--AAMAPALFILGAAGFTLYPVAMAWACEKVEH------ 316 (381)
T ss_pred HHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---h-h--HHHHHHHHHHHHHHHhHHHHHHHHHHccCCH------
Confidence 99999999999999999988777666555443332 1 1 1222334445555555666666666666553
Q ss_pred CccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHH
Q 009816 440 NSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALIS 488 (524)
Q Consensus 440 ~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 488 (524)
+.++...+..+...++|..++|.+.|++.|. +++..|.+.+.+.++.
T Consensus 317 --~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~ 364 (381)
T PRK03633 317 --HELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIY 364 (381)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4456677777788899999999999999988 8888888777666544
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=262.97 Aligned_cols=335 Identities=18% Similarity=0.253 Sum_probs=252.8
Q ss_pred hHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHH
Q 009816 111 LLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVV 190 (524)
Q Consensus 111 ~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 190 (524)
..|++.+.+.++..++++++|+++||+|||++++.+.++.+++.+++.++ ++++.+++.|++.|++.+ ..+...
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~-~~~~~~ 128 (408)
T PRK09874 55 WSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA-----QNIWQFLILRALLGLLGG-FVPNAN 128 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHhhh-hHHhHH
Confidence 35899999999999999999999999999999999999999998888886 899999999999999865 567788
Q ss_pred HHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 009816 191 AVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEED 269 (524)
Q Consensus 191 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (524)
.++.+++|+++|++++++...+..+|..++|.+++.+. .++||+.|++.+++.++..+..++.+||.++...+++ .
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 205 (408)
T PRK09874 129 ALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKE-M-- 205 (408)
T ss_pred HHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh-h--
Confidence 89999999999999999999999999999999999887 5799999999988877776666676766432111000 0
Q ss_pred ccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccCCCCCCh---
Q 009816 270 ESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALC-LFFAKLVAYTFLYWLPFYVSHTAVDGKYLSS--- 345 (524)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--- 345 (524)
.+.....+.+++++++...+. .+...........+++.|..+. .+...
T Consensus 206 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 257 (408)
T PRK09874 206 ------------------------LHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVREL----AGNVSNIA 257 (408)
T ss_pred ------------------------hHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccchHHH
Confidence 001122345677776553332 3333344445566778887775 22221
Q ss_pred hhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHH
Q 009816 346 EMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITT 425 (524)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (524)
...+.+..+.+++.+++.+..|++.||+++|+.+..+.....+..+.... ..+.+...+..++.|++.+...+...+
T Consensus 258 ~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (408)
T PRK09874 258 FISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSF---VQTPLQLGILRFLLGAADGALLPAVQT 334 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHhhhHhhHHHHHH
Confidence 12455666677888889999999999999999887776665544443322 134455555666778887777777776
Q ss_pred HHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHH
Q 009816 426 AVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~ 493 (524)
...+..+ ++.+|+..++.+....+|..+||.+.|++.+. +|+..|++.+++.+++.++..
T Consensus 335 ~~~~~~~--------~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 335 LLVYNSS--------NQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred HHHHhCC--------cccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 6666554 36678999999999999999999999999887 999999999888777665554
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=260.93 Aligned_cols=336 Identities=15% Similarity=0.114 Sum_probs=243.1
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHh---ccccccchhHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYG---IGYWGNVHSFYYYLVV 174 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~ 174 (524)
+|+++ .+.|++.+++.+++.++++++|+++||+|||++++.+.++..++.+... .......++++.+++.
T Consensus 46 lg~s~-------~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (392)
T PRK12382 46 LGFGN-------TMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVG 118 (392)
T ss_pred cCCcH-------HHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHH
Confidence 78877 9999999999999999999999999999999999999887776654332 2100112588999999
Q ss_pred HHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHh
Q 009816 175 QMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLF 253 (524)
Q Consensus 175 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~ 253 (524)
|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|++++.+. .+|||+.+.+..++.++. +.+
T Consensus 119 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~----~~~ 194 (392)
T PRK12382 119 RLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLA----WAF 194 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH----HHH
Confidence 999999999888999999999999999999999999999999999999999887 579998777654433322 222
Q ss_pred cCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 254 LPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYV 333 (524)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (524)
.++.|+.+.+++ . + . +.++.++ .++...+..++..........+.|.|+
T Consensus 195 ~~~~~~~~~~~~-------~---~-----~--------------~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~ 243 (392)
T PRK12382 195 NGTVRKVPAHAG-------E---R-----P--------------SLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYF 243 (392)
T ss_pred HHhccCCCCCcc-------c---C-----c--------------hHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHH
Confidence 222221110000 0 0 0 0001111 111111222233344455667788888
Q ss_pred hhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 009816 334 SHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITG 413 (524)
Q Consensus 334 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 413 (524)
++. +++ +.+.......++.++++++.|++.||+++|+.+..+..+..+..+.+.. .++.+..++..++.|
T Consensus 244 ~~~-----~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g 313 (392)
T PRK12382 244 ASK-----GWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL---APTAWVALAGAALTG 313 (392)
T ss_pred Hhc-----CCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHH
Confidence 764 554 3456666777888899999999999999999887777666665544432 234445555667778
Q ss_pred hhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHH
Q 009816 414 MFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~ 492 (524)
++.+...+.......+..+ ++.+|++.|+.+....+|..++|.+.|++.|. +|+..|.+.+++.+++.++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~--------~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 314 AGCSLIFPALGVEVVKRVP--------SQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHHhHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 7777777766667777665 47789999999999999999999999999998 99999999888777666554
Q ss_pred H
Q 009816 493 T 493 (524)
Q Consensus 493 ~ 493 (524)
.
T Consensus 386 ~ 386 (392)
T PRK12382 386 I 386 (392)
T ss_pred H
Confidence 4
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-31 Score=260.47 Aligned_cols=319 Identities=15% Similarity=0.104 Sum_probs=246.2
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
+|+++ ++.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++.++ ++++.+++.|++
T Consensus 36 ~~~s~-------~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l 103 (401)
T PRK11043 36 LQTSA-------SAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-----ESAAQLLVLRFV 103 (401)
T ss_pred HCCCH-------HHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHH
Confidence 78777 999999999999999999999999999999999999999999999999886 899999999999
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCC
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPV 256 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 256 (524)
+|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+. ++|||+.|++.+++.++..++.+ .+++
T Consensus 104 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 182 (401)
T PRK11043 104 QAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL-RLKP 182 (401)
T ss_pred HHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH-HcCC
Confidence 999988888888899999999999999999998889999999999999887 57999999998887777655443 4444
Q ss_pred CCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009816 257 NPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHT 336 (524)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (524)
++++++ + ++++.++++.+++|+++...+...+..........+.|.++++
T Consensus 183 ~~~~~~----~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~- 232 (401)
T PRK11043 183 SKKARK----Q-------------------------SQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ- 232 (401)
T ss_pred CCCccc----c-------------------------chHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-
Confidence 322110 0 0012345677888887766555555555566677788988876
Q ss_pred ccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH--hhcchhHHHHHHHHHHHHh
Q 009816 337 AVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYR--SYGHLSLALNIALMFITGM 414 (524)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~ 414 (524)
+|+++.+.++......++.++++++.+++.||+++|+.........+++...+.. .....+.+..+....+.++
T Consensus 233 ----~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (401)
T PRK11043 233 ----MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAA 308 (401)
T ss_pred ----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 5899999999888888889999999999999999888765554444333322211 1112233334444556677
Q ss_pred hhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 415 FVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
+.+..++.......+..| +.+|++.|+.+..+..++..++.+.|.+.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~---------~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 309 ANGAIYPIVVAQALRPFP---------QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHhhhCc---------ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 777777666555554443 4579999999999999999999999988876
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=262.81 Aligned_cols=376 Identities=19% Similarity=0.267 Sum_probs=278.0
Q ss_pred ccccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchh
Q 009816 31 SFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTA 110 (524)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 110 (524)
...+..++.+.++++..+++++|++.+.-+.+.+++. +|+++ +
T Consensus 26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~------------------------------fni~~-------s 68 (493)
T KOG1330|consen 26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTY------------------------------FNISD-------S 68 (493)
T ss_pred cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHh------------------------------cCCCc-------h
Confidence 4456677888999999999999999999998888888 78777 8
Q ss_pred hHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHH
Q 009816 111 LLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVV 190 (524)
Q Consensus 111 ~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 190 (524)
..|++.+.+.+.+.+++|++|+++|||.||+++.+|..+++++.++++++ ..||++.++|.+.|+|.+...|+++
T Consensus 69 ~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs-----~~Fwq~~l~R~~vGiGeAs~~~ia~ 143 (493)
T KOG1330|consen 69 ELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS-----NHFWQVLLCRGFVGIGEASYSPIAP 143 (493)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhccchhhhcccch
Confidence 89999999999999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred HHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh--cCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 009816 191 AVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT--YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEE 268 (524)
Q Consensus 191 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (524)
++++|.+|.++|++++++++.+..+|..+|.+.+..+.+ ..|||.|++.++++++++++.+++.+|+++....+...+
T Consensus 144 s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~ 223 (493)
T KOG1330|consen 144 SLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGE 223 (493)
T ss_pred hHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccC
Confidence 999999999999999999999999999999999998883 359999999999999999999999888655321111110
Q ss_pred cccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhh
Q 009816 269 DESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMA 348 (524)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 348 (524)
.+. .++.....++.+...++|.+....+......+...++..|.|.+.....+- .|++....
T Consensus 224 ~~~-----------------~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~-~~~~~~~~ 285 (493)
T KOG1330|consen 224 NKM-----------------VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYEL-IGFDHNAT 285 (493)
T ss_pred CcC-----------------CCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHH-hCCccccc
Confidence 000 011112344556667778777777777766666666667777665543110 35666666
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHhhhhhh----HHHHH------HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhh
Q 009816 349 GNLSTLFDVGGVLGGILAGHISDRLDAR----AITAA------SFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNG 418 (524)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (524)
.++..+...++.+|.+++|.++||+.++ ..... ......+..+.+....+. ........++++|.....
T Consensus 286 ~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~-~s~~~~~il~~~g~~~~~ 364 (493)
T KOG1330|consen 286 LIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS-SSMIFGLILFLVGETISW 364 (493)
T ss_pred hhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHh
Confidence 6777788889999999999999996432 11111 111122222222222222 223334444445544333
Q ss_pred -hhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhh-hhhhhhhhhhHhhccc--Chh
Q 009816 419 -PYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGS-VGAAIGPLLTGYISAT--SWT 475 (524)
Q Consensus 419 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~i~~~~~g~l~~~--~~~ 475 (524)
.++.......+.+| ++.|.++.++...+.. +|.+-+|++.|.+.|. +|+
T Consensus 365 ~~~a~n~~i~l~vV~--------p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 365 FNWATNNPIFLEVVP--------PSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred cccccccceeeEecC--------cccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 23344455556666 4667888888777764 4555566699999987 555
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-31 Score=259.17 Aligned_cols=354 Identities=15% Similarity=0.122 Sum_probs=265.7
Q ss_pred hhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHH
Q 009816 36 QAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGEL 115 (524)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~ 115 (524)
.++.+....+......+....+.+..|.+.++ +|+++ .+.+++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~------------------------------~~~s~-------~~~~~~ 48 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARD------------------------------LNVRE-------GAVQAV 48 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH------------------------------hCCCH-------HHHHHH
Confidence 34444444444445555666666677777777 78777 999999
Q ss_pred HHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhh
Q 009816 116 DLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGN 195 (524)
Q Consensus 116 ~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~ 195 (524)
.+.+.+++.++++++|+++||+|||+++..+.++.+++.+++.++ ++++.+++.|++.|++.+...+....++.|
T Consensus 49 ~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 123 (394)
T PRK11652 49 MAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-----HSLTVLIAASAIQGLGTGVGGVMARTLPRD 123 (394)
T ss_pred HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998886 899999999999999998888888889999
Q ss_pred ccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCc
Q 009816 196 WFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSP 274 (524)
Q Consensus 196 ~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (524)
.+++++++++.++...+..+|..++|.+++.+. ..|||+.|++.+++.++..++..++.||+++.++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 193 (394)
T PRK11652 124 LYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADARR---------- 193 (394)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccch----------
Confidence 999999999999999999999999999999887 469999999988877766666666677653321100
Q ss_pred cccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHH
Q 009816 275 KKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTL 354 (524)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 354 (524)
++....++..+++|.++...+..+........+....+.++++. +|+++.+.++....
T Consensus 194 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~ 251 (394)
T PRK11652 194 ------------------TRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV----LGLSSMTVSILFIL 251 (394)
T ss_pred ------------------hHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH----cCCCHHHHHHHHHH
Confidence 00123456678888877666655555555555566778888886 79999999998888
Q ss_pred HHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccc
Q 009816 355 FDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTH 434 (524)
Q Consensus 355 ~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (524)
..++.+++.++.+++.||.+++........................+.+.......+.+++.+...+.......+..|
T Consensus 252 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-- 329 (394)
T PRK11652 252 PIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-- 329 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Confidence 888888999999999999874333322222222111111111112233445555666777777777777777766654
Q ss_pred ccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 435 SSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 435 ~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
+.+|++.++.+....+|+.+++.+.+.+.+.
T Consensus 330 -------~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 330 -------YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred -------ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4568999999999999999999999988765
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-31 Score=258.15 Aligned_cols=335 Identities=17% Similarity=0.143 Sum_probs=251.5
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
+|++. .+.|++.+.+.++..+.++++|+++||+|||++++.+.++.+++.+++.++ ++++.+++.|++
T Consensus 41 ~g~s~-------~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l 108 (400)
T PRK11646 41 LGWAA-------VMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-----HEPWLLWLSCIL 108 (400)
T ss_pred hCCcH-------HHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHH
Confidence 78777 999999999999999999999999999999999999999999999999886 899999999999
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHHHhcCCC
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVN 257 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~ 257 (524)
+|++.+...|...+++.|++|+++|++++++.....++|..+||.+++.+.++|||+.|++.+++.++..++..++.||.
T Consensus 109 ~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 109 SGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999988999999999999999999999999999999999999999999888999999998887776655555555542
Q ss_pred CCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009816 258 PESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTA 337 (524)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (524)
++.. . + ++...++++.+++|+++...+..+...........++|.|+++.
T Consensus 189 ~~~~---~-~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~- 238 (400)
T PRK11646 189 KLST---V-R-------------------------TPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDI- 238 (400)
T ss_pred cccc---c-c-------------------------hhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhh-
Confidence 1100 0 0 00112355678888877665554444444444567889998886
Q ss_pred cCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhh
Q 009816 338 VDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDR-LDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFV 416 (524)
Q Consensus 338 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 416 (524)
+.++.+.+.+.+..+++...+....+++.|| .+.++.+..+..+..++...+.. .++.+...+...+.+.+.
T Consensus 239 ----~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~l~~~g~ 311 (400)
T PRK11646 239 ----AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGM---VSNLQQLFTLICLFYIGS 311 (400)
T ss_pred ----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHH
Confidence 4467788888888777776666555666654 55555555555555544433322 233344444455566666
Q ss_pred hhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcccC-----hhHHHHHHHHHHHHHH
Q 009816 417 NGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATS-----WTAVFTMLMAAALISG 489 (524)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~-----~~~~~~~~~~~~~~~~ 489 (524)
+...+...+...+..| ++.+|++.|+.+....+|..+||.+.|++.|.+ ....++..+++.+++.
T Consensus 312 ~~~~p~~~~~~~~~~p--------~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (400)
T PRK11646 312 IIAEPARETLSASLAD--------ARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITL 381 (400)
T ss_pred HHHHccHHHHHHhcCC--------cccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 6666666677777776 367799999999999999999999999999872 3445555444444443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=261.25 Aligned_cols=406 Identities=21% Similarity=0.262 Sum_probs=317.2
Q ss_pred cccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhh
Q 009816 32 FKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTAL 111 (524)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (524)
...+.|.+.+..+++.+..+.....++++.+.++++ ++-+. .+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~------------------------------f~~s~-------~~ 82 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDY------------------------------FGSSS-------SQ 82 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHH------------------------------hCCCc-------cH
Confidence 678999999999999999999999999988888888 66565 78
Q ss_pred HhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHH-HHHHHHhhhcchhhHH
Q 009816 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVV-QMLAGLFQSTGWPSVV 190 (524)
Q Consensus 112 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-r~l~G~~~~~~~~~~~ 190 (524)
++|+.++..-.+.+.+|+.+.+.||+|.|.+.+.|.++.+++.++.+++ +++|++++. -++.|+|.++.+.+..
T Consensus 83 ~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~-----~~i~~l~lt~gvi~G~G~~~~~~pai 157 (509)
T KOG2504|consen 83 IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA-----TSLWQLYLTFGVIGGLGLGLIYLPAV 157 (509)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHhhccchhhhcchh
Confidence 9999999999999999999999999999999999999999999999998 888887765 5678999999999999
Q ss_pred HHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 009816 191 AVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEED 269 (524)
Q Consensus 191 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (524)
.++..|| +++|+.+.|+...+.++|.++-|.+...+. .+|||+.+++.+.+.+-..+......|..++..+...++.+
T Consensus 158 viv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~ 236 (509)
T KOG2504|consen 158 VILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLR 236 (509)
T ss_pred hhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhc
Confidence 9999999 578999999999999999999888887777 68999999999998877766666666644333221000000
Q ss_pred c--------------cCCccccCCC----cccccccc-hhhh---hhhhhhH---HHHhcCCCcHHHHHHHHHHHHHHHH
Q 009816 270 E--------------SLSPKKIGEG----VTQPLLRR-ETKI---EEKAVGF---IEAWKIPGVAPFALCLFFAKLVAYT 324 (524)
Q Consensus 270 ~--------------~~~~~~~~~~----~~~~~~~~-~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (524)
. ....+..... ......++ +.+. ..+.... .+++++|.++.+.+...+....+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~ 316 (509)
T KOG2504|consen 237 NSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNV 316 (509)
T ss_pred cccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 0 0000000000 00000000 0000 1111122 5789999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHH--HHHHHHHHHHHHHHHHhhcchhH
Q 009816 325 FLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAIT--AASFMYCAIPALFFYRSYGHLSL 402 (524)
Q Consensus 325 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 402 (524)
...++|.|..+ ++++..+++.+.++.++..++++++.|+++|+...++.. .++.+..++..+.+. ...+.
T Consensus 317 p~~~l~~~~~~-----~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p---~~~~~ 388 (509)
T KOG2504|consen 317 PFVYLPSYAKS-----LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLP---FATTY 388 (509)
T ss_pred HHHHHHHHHhh-----cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHH---HhccH
Confidence 99999999996 599999999999999999999999999999998744433 333333333332222 24566
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHH
Q 009816 403 ALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTM 480 (524)
Q Consensus 403 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~ 480 (524)
+..+....++|++.+.........+.+.++. +....+.|+...+..++..+||++.|++.|. +|...|+.
T Consensus 389 ~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~--------~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~ 460 (509)
T KOG2504|consen 389 VGLIVFSILFGFCVGSFSSLTPVILVDLVGL--------EKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYF 460 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh--------hhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhh
Confidence 7778888889999888888777788888874 5668899999999999999999999999998 69999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 009816 481 LMAAALISGLLLTRLV 496 (524)
Q Consensus 481 ~~~~~~~~~~~~~~~~ 496 (524)
+++..+++....+...
T Consensus 461 ~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 461 CGLCFLLSAVLLLILR 476 (509)
T ss_pred cChHHHHHHHHHHHhH
Confidence 9999888876666544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=255.40 Aligned_cols=321 Identities=16% Similarity=0.168 Sum_probs=239.9
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
+|+++ .+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++ ++++.+++.|++
T Consensus 21 ~~~s~-------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l 88 (377)
T PRK11102 21 FGVSA-------GSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----QTIDQLIYMRFL 88 (377)
T ss_pred hCCCH-------HHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHH
Confidence 77777 999999999999999999999999999999999999999999999999986 899999999999
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCC
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPV 256 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 256 (524)
.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+. ..+||+.|++.+++.++..++..+.+||
T Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (377)
T PRK11102 89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPE 168 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999999999887 5799999999888887776666677776
Q ss_pred CCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009816 257 NPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHT 336 (524)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (524)
+++++++++. +.++....+++.+++|.++...+..++..........+.|.++.+.
T Consensus 169 ~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (377)
T PRK11102 169 TLPKERRQPF------------------------HLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIEL 224 (377)
T ss_pred cCcccccCCC------------------------ChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 5332110000 0001123455678888887776666666666666667778787776
Q ss_pred ccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHhh
Q 009816 337 AVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSY-GHLSLALNIALMFITGMF 415 (524)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ 415 (524)
+|+++.+.+.+.....++.++++++.+++.||+++|+.+..+.....+..+.+.... ...+.+...+...+.+.+
T Consensus 225 ----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T PRK11102 225 ----NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGC 300 (377)
T ss_pred ----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999988877765444333222211 112223333333333333
Q ss_pred hhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhh-hhhhhhhhhhhH
Q 009816 416 VNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTG-SVGAAIGPLLTG 467 (524)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~i~~~~~g 467 (524)
.+...........+.. ++.++++.++.+... .+|..+++.+.+
T Consensus 301 ~~~~~~~~~~~~~~~~---------~~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 301 VSMISSNAMAVILDEF---------PHMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHhhHHHHHHHhccc---------cccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333332 255688888877654 456666666544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-30 Score=254.41 Aligned_cols=255 Identities=14% Similarity=0.108 Sum_probs=207.8
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
+|.++ .+.+++.+.+.++..+++++.|+++||+|||+.++.+.++.+++.+++..+ ++++.+++.|++
T Consensus 33 ~~~s~-------~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l 100 (392)
T PRK10473 33 LNASE-------AQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA-----ETSSLFLAGRFL 100 (392)
T ss_pred hCCCH-------HHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHH
Confidence 77776 899999999999999999999999999999999999999999999999886 889999999999
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCC
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPV 256 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 256 (524)
+|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+. ..+||+.|++.+++.++..++..+.+||
T Consensus 101 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (392)
T PRK10473 101 QGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKE 180 (392)
T ss_pred HHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999989999999999999999999999999999999999999998876 5799999999988888777777777776
Q ss_pred CCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009816 257 NPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHT 336 (524)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (524)
++++...+ + . +.....++.+++++++...+...+..........+.|.++++.
T Consensus 181 ~~~~~~~~--~-----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (392)
T PRK10473 181 TRPARAPA--A-----S--------------------SKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQ 233 (392)
T ss_pred CCCcccCC--c-----c--------------------chHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 54321000 0 0 0011224556777766655554444444445566677787776
Q ss_pred ccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009816 337 AVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYR 395 (524)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 395 (524)
+|+++.+.+......+++.+++.++.+++.||+++|+.+..+..+..++.+.+..
T Consensus 234 ----~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 288 (392)
T PRK10473 234 ----MGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLAL 288 (392)
T ss_pred ----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999888877766665555443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-31 Score=257.92 Aligned_cols=348 Identities=19% Similarity=0.235 Sum_probs=257.2
Q ss_pred HHHHHHHHHHHhhcccccccccc-cCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHH
Q 009816 41 IVTFFAYTSYHAARKTTSIVKST-LDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAF 119 (524)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~ 119 (524)
...++++++.+.....+++..|. ++++ +|+++ .+.+++.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~s~-------~~~~~~~~~~ 46 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDD------------------------------LGLST-------AQLGNLVAVP 46 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHH------------------------------hCCCH-------HHhhHhhHHH
Confidence 34667777788888889999995 8788 88887 9999999999
Q ss_pred HHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccch-hHHHHHHHHHHHHHhhhcchhhHHHHHhhccc
Q 009816 120 LSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVH-SFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFG 198 (524)
Q Consensus 120 ~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~ 198 (524)
.+++.++++++|+++||+|||+.++++.++.+++.++++++ + +++.+++.|+++|++.+. .+...+++.|++|
T Consensus 47 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~ 120 (366)
T TIGR00886 47 VLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA-----VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFP 120 (366)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcC
Confidence 99999999999999999999999999999999999999987 7 999999999999998654 5667899999999
Q ss_pred cccccceehhhhhhhhhHHHHHHHHHHHhhh-----------cCchhHH-HHhHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 009816 199 KSKRGLIMGIWNAHTSIGNITGSLVASALLT-----------YGWGWSF-VVPGLIIAFVGLIVFLFLPVNPESVGTDTN 266 (524)
Q Consensus 199 ~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-----------~gwr~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (524)
+++|++++++.....++|..+++.+++.+.. .+||+.| +..+++..+..++.+...+|.|+...++++
T Consensus 121 ~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (366)
T TIGR00886 121 KKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGK 200 (366)
T ss_pred HhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchh
Confidence 9999999999998888888888777765542 3899999 444666655555566666665543211110
Q ss_pred cccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChh
Q 009816 267 EEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSE 346 (524)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 346 (524)
. + .. +.... . .++.....++.+++|+++...+..++..........+.|.|+++. +|+++.
T Consensus 201 ~--~-~~--~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~ 261 (366)
T TIGR00886 201 L--S-FK--GARWS-----V-----GTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQ----FGLSKV 261 (366)
T ss_pred c--c-cc--ccccc-----c-----cchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCcHH
Confidence 0 0 00 00000 0 001112346678889988888777777777778889999999887 799999
Q ss_pred hhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHhhhhhhhHHHHH
Q 009816 347 MAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHL-SLALNIALMFITGMFVNGPYALITT 425 (524)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (524)
+++.+.....+..++++++.|++.||+++|+.+..+......+..++....... +.+.......+.+++.+...+....
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 341 (366)
T TIGR00886 262 TAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFA 341 (366)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhh
Confidence 999998999999999999999999999998877666655555444443322211 3444344444444555555555555
Q ss_pred HHHhhhcccccCCCCccchhHHHHHHHhhhhhhh
Q 009816 426 AVSADLGTHSSLKGNSRALATVTAIIDGTGSVGA 459 (524)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 459 (524)
...+..+ +.+|++.|+.+...++|+
T Consensus 342 ~~~~~~~---------~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 342 LVPHIFR---------RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred cchhhch---------hhcccHHHHHHHhccCCC
Confidence 5555443 567999999988877763
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-30 Score=257.29 Aligned_cols=345 Identities=13% Similarity=0.077 Sum_probs=247.5
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccC-----Cchhh-HHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhh
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRL-----DLRIF-LTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQS 183 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grr~~-l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~ 183 (524)
.++|.+ +.....+ ++.+++|+++||+ |||+. ++.+.+..+++..++++. .+.++++.+.+.+++.|++.+
T Consensus 47 ~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~--~~~~~l~~l~~~~~l~~~~~a 122 (491)
T PRK11010 47 KTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL--EPGTQLRWLAALAVVIAFCSA 122 (491)
T ss_pred HHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHHH
Confidence 778875 4444444 5899999999999 99885 667777777777777664 123578899999999999999
Q ss_pred cchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh--cCchhHHHHhHHHHHHHHHHHHHhcCCCCCCC
Q 009816 184 TGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT--YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESV 261 (524)
Q Consensus 184 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (524)
...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+ .|||..|++.+++.++..+ ..++.||+++..
T Consensus 123 ~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l-~~~~~~e~~~~~ 201 (491)
T PRK11010 123 SQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCII-ATLLAPEPTDTI 201 (491)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH-HHHhcCCCcccc
Confidence 9999999999999999999999999999999999999999988885 4999999999887766644 334466643211
Q ss_pred CCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009816 262 GTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGK 341 (524)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (524)
+ + + +. . .++...++++.++++..+...+..++..........+.+.|+.+. +
T Consensus 202 ~--~-~-~~------~--------------~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~----~ 253 (491)
T PRK11010 202 P--V-P-KT------L--------------EQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRG----V 253 (491)
T ss_pred c--c-c-cc------h--------------hhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c
Confidence 0 0 0 00 0 000122355677778777766666666666666677888887765 7
Q ss_pred CCChhhhhhHHH-HHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHhhhhhh
Q 009816 342 YLSSEMAGNLST-LFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYR-SYGHLSLALNIALMFITGMFVNGP 419 (524)
Q Consensus 342 g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~ 419 (524)
|++..+.+.+.. ...++.+++.++.|++.||+++|+.+..+..+.++..+.+.. .....+.+......++..++.+..
T Consensus 254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~ 333 (491)
T PRK11010 254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG 333 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 999999999874 556799999999999999999988776655544443322221 111123333333334433333334
Q ss_pred hHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHH
Q 009816 420 YALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRL 495 (524)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
.+...+...+..+ ++..++..|+.+....+|..+++.+.|++.|. ||+..|.+.+++.+.+.+.....
T Consensus 334 ~~~~~a~~~~l~~--------~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 334 TAAFVALLMTLCN--------KSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHcC--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555 35568899999999999999999999999998 99998888888877766655543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=256.77 Aligned_cols=323 Identities=19% Similarity=0.211 Sum_probs=237.0
Q ss_pred HHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHH--------HHHHHHHHHHHhhhcchhhHHH
Q 009816 120 LSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFY--------YYLVVQMLAGLFQSTGWPSVVA 191 (524)
Q Consensus 120 ~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~ 191 (524)
.++..+++++.|+++||+|||++++++.++.+++.++++++ +++. .+++.|+++|++.+...+...+
T Consensus 45 ~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 119 (394)
T TIGR00883 45 FLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL-----PSYATIGIWAPILLLLARLIQGFSLGGEWGGAAL 119 (394)
T ss_pred HHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC-----CChhhhHHHHHHHHHHHHHHHHhhccccccccHH
Confidence 33445789999999999999999999999999999999986 6654 5889999999999999999999
Q ss_pred HHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh---------hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCC
Q 009816 192 VVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL---------TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVG 262 (524)
Q Consensus 192 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~---------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (524)
++.|++|+++|++..++...+..+|.++++.++..+. .++||+.|++.+++.++. .......||+++...
T Consensus 120 ~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 198 (394)
T TIGR00883 120 YLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG-LYLRRNLEETPVFEK 198 (394)
T ss_pred HhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH-HHHHHhcCCChhHHH
Confidence 9999999999999999999999999999998876653 368999999876655443 334445555443211
Q ss_pred CCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 009816 263 TDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPG--VAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDG 340 (524)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (524)
.++++ ++...+.++.+++++ ++......++..........++|.|+++.
T Consensus 199 ~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 249 (394)
T TIGR00883 199 AQEKH-------------------------KKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT---- 249 (394)
T ss_pred HHhcc-------------------------ccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 10000 001112344555555 55666666666667777788999999776
Q ss_pred CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHHHhhcchhHHHHHHHHHHHHhhhhhh
Q 009816 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPA-LFFYRSYGHLSLALNIALMFITGMFVNGP 419 (524)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (524)
+|.++.+.+.......++.+++.++.|++.||++||+.+.....+..+.. ..........+.+......++.+++.+..
T Consensus 250 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 329 (394)
T TIGR00883 250 LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMY 329 (394)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999997765544443332 22221112234455555666777777777
Q ss_pred hHHHHHHHHhhhcccccCCCCccchhHHHHHH-HhhhhhhhhhhhhhhHhhccc-C-hhHHHHHHHHHH
Q 009816 420 YALITTAVSADLGTHSSLKGNSRALATVTAII-DGTGSVGAAIGPLLTGYISAT-S-WTAVFTMLMAAA 485 (524)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~-~-~~~~~~~~~~~~ 485 (524)
.+.....+.+.+|+ +.|+++.++. +....+|..++|.+.|++.|. + +...++...++.
T Consensus 330 ~~~~~~~~~~~~p~--------~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 330 TGPMGSFLPELFPT--------EVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred hhhHHHHHHHhCCc--------cceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 88888888888874 4557777764 445567888999999999987 5 665555554433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.6e-30 Score=252.17 Aligned_cols=339 Identities=15% Similarity=0.069 Sum_probs=256.9
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
+|++. .+.|++.+.+.++..+++++.|+++||+|||++++++.++.+++.++.+++ ++++.+++.|++
T Consensus 38 ~g~s~-------~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 105 (395)
T PRK10054 38 YSLSV-------DLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-----NNVTLVVLFFAL 105 (395)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHH
Confidence 88887 999999999999999999999999999999999999999999998888886 889999999999
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHHHhcCCC
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVN 257 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~ 257 (524)
.|.+.+...+...++..|.+|+++|++++++.....++|.+++|++++++.+.+|+.+|++.+++.++..++..+.+|++
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 106 INCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99888888888999999999999999999999999999999999999998888999999998877766655555556554
Q ss_pred CCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009816 258 PESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTA 337 (524)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (524)
++++++++ . +..+.++.+++|+++...+..++..+.......+.+.|....
T Consensus 186 ~~~~~~~~-------~---------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~- 236 (395)
T PRK10054 186 EKAIATET-------G---------------------SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV- 236 (395)
T ss_pred ccccccch-------h---------------------hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh-
Confidence 32210000 0 001124678899998888777776666666666777776543
Q ss_pred cCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhh
Q 009816 338 VDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVN 417 (524)
Q Consensus 338 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (524)
.+.+.+....+.+.....+..+......|++.||.++|+.+..+..+..+....+... ..+.+...+...+.+++..
T Consensus 237 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~ 313 (395)
T PRK10054 237 -ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS--GNSLLLWGMSAAVFTVGEI 313 (395)
T ss_pred -cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc--chHHHHHHHHHHHHHHHHH
Confidence 0146667777778787777777778888999999999998877776665555444321 2344444455666777766
Q ss_pred hhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHH
Q 009816 418 GPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISG 489 (524)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~ 489 (524)
...+.....+.+..|+ +.++++.+..+ ...+|..+||.+.|++.|+ ++...|.+.+.+..+..
T Consensus 314 ~~~p~~~~~~~~~~p~--------~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~ 377 (395)
T PRK10054 314 IYAPGEYMLIDHIAPP--------GMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAW 377 (395)
T ss_pred HHHhhHHHHHHHhCCc--------ccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHH
Confidence 5556655566666553 45577777654 5668999999999999998 77777766655544433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=247.67 Aligned_cols=342 Identities=29% Similarity=0.486 Sum_probs=291.7
Q ss_pred HHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHHHHH
Q 009816 43 TFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSI 122 (524)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~~l~ 122 (524)
+.+..+...++....+...|.+.++ +|.++ .+.+++.+.+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~-------~~~~~~~~~~~~~ 46 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAED------------------------------LGLSA-------SQAGLIVSAFSLG 46 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHH------------------------------cCCCH-------HHHHHHHHHHHHH
Confidence 3455666677777777777777766 66665 8999999999999
Q ss_pred HHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhccccccc
Q 009816 123 YAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKR 202 (524)
Q Consensus 123 ~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r 202 (524)
..+++++.|+++||+|||+.+..+.++..++.++...+ ++++.+++.|++.|++.+...+...+++.|++|+|+|
T Consensus 47 ~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 121 (352)
T cd06174 47 YALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-----SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKER 121 (352)
T ss_pred HHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccch
Confidence 99999999999999999999999999999999999986 8999999999999999999999999999999999999
Q ss_pred cceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCc
Q 009816 203 GLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGV 281 (524)
Q Consensus 203 ~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (524)
++.+++......+|..++|.+++.+. ..+||+.|++.+++.++..+...+. +
T Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------------- 174 (352)
T cd06174 122 GRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFL-L-------------------------- 174 (352)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-H--------------------------
Confidence 99999999999999999999999988 4689999999888777665544332 2
Q ss_pred ccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHh
Q 009816 282 TQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVL 361 (524)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 361 (524)
|.++...+..++..........+.|.+..+. +|.+..+.+.......++.++
T Consensus 175 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i 226 (352)
T cd06174 175 ------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV----LGLSAAEAGLLLSLFGLGGIL 226 (352)
T ss_pred ------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHH
Confidence 2355566667777777888889999999886 689999999999999999999
Q ss_pred hhHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCC
Q 009816 362 GGILAGHISDRLDARA-ITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGN 440 (524)
Q Consensus 362 ~~~~~g~l~dr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (524)
+.++.+++.||+++|+ .+..+..+..++.+..... .+.+...+..++.|++.+...+.......+..|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------- 296 (352)
T cd06174 227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA---PSLALLLVALLLLGFGLGFAFPALLTLASELAPP------- 296 (352)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH-------
Confidence 9999999999999999 8877777777666655432 3356667777888898888888888888888773
Q ss_pred ccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHH
Q 009816 441 SRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 441 ~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~ 492 (524)
+.+++..|+.+....++..++|.+.|.+.+. +++..+.+.+++.+++.++.
T Consensus 297 -~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 297 -EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 7789999999999999999999999999977 89999998888877765554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-29 Score=244.49 Aligned_cols=336 Identities=17% Similarity=0.191 Sum_probs=232.2
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHH-HHHhhhhhhhcccccCCchhhH-HHHHHHHHHHHHHHhccccccchhHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLS-IYAGGMFFSGHLGDRLDLRIFL-TVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQ 175 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l-~~~~~~~~~G~l~Dr~Grr~~l-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r 175 (524)
+|+++ ++.|++.+.+.+ ++.++.+++|+ .||+||||.+ +.+.++.+++..+.+++ ++++.+++.+
T Consensus 46 ~~~s~-------~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~ 112 (393)
T PRK15011 46 VHARP-------AMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN-----RNYFVLLFVG 112 (393)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHH
Confidence 78877 999999776544 66666666666 9999999874 55666666777777786 8888877666
Q ss_pred HHHHHhhhcchhhHHHHHhhcccccccc--ceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHH
Q 009816 176 MLAGLFQSTGWPSVVAVVGNWFGKSKRG--LIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFL 252 (524)
Q Consensus 176 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~ 252 (524)
.+.|...+...|...+++.++.++++|. ...++...+.++|.++||++++.+. ++|||..|++.+++.++.+++.++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 113 VFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 6555445567888888888888765553 3457888899999999999999998 679999999998888887777777
Q ss_pred hcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 253 FLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKI-PGVAPFALCLFFAKLVAYTFLYWLPF 331 (524)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (524)
.+||.+++++..+. +.+ ...++ +..+.......+.......+..++|.
T Consensus 193 ~~~~~~~~~~~~~~----------~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 241 (393)
T PRK15011 193 FLPSMRKELPLATG----------TLE---------------------APRRNRRDTLLLFVICTLMWGTNSLYIINMPL 241 (393)
T ss_pred hcCccCCCCccccc----------ccc---------------------ccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78876433211000 000 00011 12222333333444455556678999
Q ss_pred HHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 009816 332 YVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFI 411 (524)
Q Consensus 332 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (524)
|+++. +|+++.+.+.+.....++.+++.++.|+++||+++|+.+..+.....+....... ..+.+..+...++
T Consensus 242 ~l~~~----~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l 314 (393)
T PRK15011 242 FIINE----LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM---AHSPAILLGLQLL 314 (393)
T ss_pred HHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHH
Confidence 99877 7999999998888877888889999999999999998776654444333222211 2233333444444
Q ss_pred HHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHH
Q 009816 412 TGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGL 490 (524)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~ 490 (524)
.+++.+...+.......+..| +.++++.++.+...++|..++|.+.|.+.|. +|+..+.+..++.+++.+
T Consensus 315 ~~~~~g~~~~~~~~~~~~~~p---------~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~ 385 (393)
T PRK15011 315 NAIYIGILGGIGMLYFQDLMP---------GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLF 385 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhCC---------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 444444444444444555444 3468999999888999999999999999997 898888877766666554
Q ss_pred HHH
Q 009816 491 LLT 493 (524)
Q Consensus 491 ~~~ 493 (524)
...
T Consensus 386 ~~~ 388 (393)
T PRK15011 386 CLL 388 (393)
T ss_pred HHH
Confidence 444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=247.78 Aligned_cols=362 Identities=12% Similarity=0.092 Sum_probs=271.5
Q ss_pred HHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHH
Q 009816 40 LIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAF 119 (524)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~ 119 (524)
+.++++.++...+.....+++.|.++++ +|+++ .+.|++.+.+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~------------------------------~~~s~-------~~~g~l~s~~ 47 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQA------------------------------FTLTA-------FQAALVQSAF 47 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH------------------------------hCCCH-------HHHHHHHHHH
Confidence 4455566666677777778888999888 88877 9999999999
Q ss_pred HHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhcccc
Q 009816 120 LSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGK 199 (524)
Q Consensus 120 ~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 199 (524)
.+++.+++++.|++.||+|||++++++.++++++.+++..+ ...++++.+++.|++.|+|.+...+....++.+..|+
T Consensus 48 ~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~--~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~ 125 (410)
T TIGR00885 48 YGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPA--AEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE 125 (410)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH
Confidence 99999999999999999999999999999999998886442 0126899999999999999999999999999999999
Q ss_pred ccccceehhhhhhhhhHHHHHHHHHHHhhh---------------------------cCchhHHHHhHHHHHHHHHHHHH
Q 009816 200 SKRGLIMGIWNAHTSIGNITGSLVASALLT---------------------------YGWGWSFVVPGLIIAFVGLIVFL 252 (524)
Q Consensus 200 ~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~---------------------------~gwr~~f~~~~~~~~~~~~~~~~ 252 (524)
++|++.+++.+...++|..++|.++..+.. .+||++|++.+++.++..++..
T Consensus 126 ~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~- 204 (410)
T TIGR00885 126 STATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM- 204 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999887741 2599999998887776544332
Q ss_pred hcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 253 FLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFY 332 (524)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (524)
+.+ .|+.+.. ++++ . +.....++.+|+|+++...+..++......+..++++.|
T Consensus 205 ~~~-~p~~~~~---~~~~--~--------------------~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y 258 (410)
T TIGR00885 205 LTK-MPALNHS---DAKQ--I--------------------SFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQY 258 (410)
T ss_pred Hhc-CCCCCcc---cccc--c--------------------cchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 1211100 0000 0 001123467888888888888888777777888899999
Q ss_pred HhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 009816 333 VSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFIT 412 (524)
Q Consensus 333 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (524)
.++.. .+.+....+...+....+..+|+++++++.||+++|+.+.+......+..++.... ++ ......+.+.
T Consensus 259 ~~~~~---~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~---~~-~~~~~~l~~~ 331 (410)
T TIGR00885 259 AVRLI---PGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA---GG-HVGLYCLTLC 331 (410)
T ss_pred Hhhcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---CC-hHHHHHHHHH
Confidence 87641 24444444555666667888999999999999999998877777666665555432 22 2335667778
Q ss_pred HhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-------ChhHHHHHHHHH
Q 009816 413 GMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-------SWTAVFTMLMAA 484 (524)
Q Consensus 413 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-------~~~~~~~~~~~~ 484 (524)
|++.+..++...+...+.++++ ....+.++... .+|+++.|++.|++.|. +++..|++...+
T Consensus 332 glf~s~~fp~i~sl~~~~~g~~--------~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~ 400 (410)
T TIGR00885 332 SAFMSLMFPTIYGIALKGLGQD--------TKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC 400 (410)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh--------hhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence 8889999999999998888742 22223333333 49999999999999993 366666654433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-29 Score=243.04 Aligned_cols=357 Identities=16% Similarity=0.099 Sum_probs=268.7
Q ss_pred HHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHHHHH
Q 009816 43 TFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSI 122 (524)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~~l~ 122 (524)
+.+.++..+.......+..|.+.++ +|++. +++|++.+.+.+.
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~------------------------------~g~s~-------~~ig~~~s~~~~~ 51 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKG------------------------------IGLGE-------EMIGLLIGAALIA 51 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------------------cCCCH-------HHHHHHHHHHHHH
Confidence 3344555555555555566666666 88887 9999999999999
Q ss_pred HHhhhhhhhcccccCCchhhH----HHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhccc
Q 009816 123 YAGGMFFSGHLGDRLDLRIFL----TVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFG 198 (524)
Q Consensus 123 ~~~~~~~~G~l~Dr~Grr~~l----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~ 198 (524)
..++++++|+++||+|||+.. ..+..+..+ ..+..+ ++++.+++.|+++|.+.+...|...++..++
T Consensus 52 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~-----~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-- 122 (382)
T TIGR00902 52 RFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGA-----HNAWLLFIAIGLFALFFSAGMPIGDALANTW-- 122 (382)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhh-----hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--
Confidence 999999999999999985433 222222222 233344 8899999999999999888889988887664
Q ss_pred cccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCcccc
Q 009816 199 KSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKI 277 (524)
Q Consensus 199 ~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (524)
+++|+++.+......++|.+++|++++.+. ++|||..|++.+.+. +..++. +.++++++..++.+ + + .
T Consensus 123 ~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-~--~--~---- 191 (382)
T TIGR00902 123 QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGL-AFMLIG-FLIKPTIPPKDAIP-E--D--E---- 191 (382)
T ss_pred HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH-HHHHHH-HHcCCCCCCCcccc-c--c--c----
Confidence 468999999999999999999999999988 579999998876543 222333 33333321110000 0 0 0
Q ss_pred CCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHH
Q 009816 278 GEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDV 357 (524)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 357 (524)
.+.....++++|+|+++...+..++..........+.|.|+++ .|.++.+.|.+.....+
T Consensus 192 ---------------~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-----~g~s~~~~g~l~~~~~~ 251 (382)
T TIGR00902 192 ---------------SQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-----AGISASATGLLWGIGVL 251 (382)
T ss_pred ---------------cccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCHhHHHHHHHHHHH
Confidence 0011235678899999999888888888888888999999987 59999999999999999
Q ss_pred HHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccC
Q 009816 358 GGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSL 437 (524)
Q Consensus 358 ~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (524)
+.+++.++.+++.||++.|+.+.++.+...+....... .++.+..+...++.|+..+...+....++.+. |
T Consensus 252 ~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~----- 322 (382)
T TIGR00902 252 AEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA---IEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-P----- 322 (382)
T ss_pred HHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-----
Confidence 99999999999999999999998888877777655543 35666677778889999888888887777765 4
Q ss_pred CCCccchhHHHHHHHh-hhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHH
Q 009816 438 KGNSRALATVTAIIDG-TGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISG 489 (524)
Q Consensus 438 ~~~~~~~g~~~g~~~~-~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~ 489 (524)
++.+++..++++. ...+|..++|.+.|++.|. ++ ..|...+++.+++.
T Consensus 323 ---~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 323 ---GSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAF 372 (382)
T ss_pred ---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 3556888998864 5679999999999999998 64 56767666665543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=244.70 Aligned_cols=381 Identities=16% Similarity=0.119 Sum_probs=271.2
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
...+.+.+++.+|.++|++..|+++||+|||..++++.++..++.+++.++ ...+++.+++++|++.|+..|......
T Consensus 60 ~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s--~~~~~~e~li~GR~i~Gl~~gl~~~~~ 137 (485)
T KOG0569|consen 60 LLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLS--KSAPSFEMLILGRLIVGLACGLSTGLV 137 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHhHHHHHHH
Confidence 557788999999999999999999999999999999999988888877765 224899999999999999999999999
Q ss_pred HHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh---hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCC-CC
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL---TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGT-DT 265 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~---~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 265 (524)
..++.|..|++.||......+.+..+|.+++..++.--. .-.|++.+.+..+++++. ++.+.++||+|++.-. ++
T Consensus 138 pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PESPk~Ll~~k~ 216 (485)
T KOG0569|consen 138 PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPESPKYLLIKKG 216 (485)
T ss_pred HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCCCcchHHHHcC
Confidence 999999999999999999999999999999977664322 236999998877766665 6678889999998655 33
Q ss_pred ccccccCCcc---ccCCCcccc-----cccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 009816 266 NEEDESLSPK---KIGEGVTQP-----LLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLV-----AYTFLYWLPFY 332 (524)
Q Consensus 266 ~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 332 (524)
+++++.+..+ .+.+..++. ..++++..+++..++++++++|..+.-....+...+. ......+...+
T Consensus 217 ~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i 296 (485)
T KOG0569|consen 217 DEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSI 296 (485)
T ss_pred CHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHH
Confidence 3333322111 111101100 0011111122566788999998876643332222221 22334455555
Q ss_pred HhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchh---HH---HHH
Q 009816 333 VSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLS---LA---LNI 406 (524)
Q Consensus 333 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~ 406 (524)
+.+ .|++..++.+.....++..++.++++.++.||.|||.+++.+..++.+..+++.......+ .| ..+
T Consensus 297 ~~~-----aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i 371 (485)
T KOG0569|consen 297 FKT-----AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCI 371 (485)
T ss_pred HHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 555 4999999999999999999999999999999999999999988888777666543211111 11 223
Q ss_pred HHHHHHHhhhhhh-hHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHH
Q 009816 407 ALMFITGMFVNGP-YALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAA 484 (524)
Q Consensus 407 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~ 484 (524)
++.+++.++++.. .+......+|.+| ++.|+.+.++...++.+...+-......+.+. |- ..|....+.
T Consensus 372 ~~~~~~~~~f~~G~gpi~~fi~aELf~--------~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~ 442 (485)
T KOG0569|consen 372 AAIFLFIISFAIGPGPIPWFIGAELFP--------QSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIP 442 (485)
T ss_pred HHHHHHHHhhhcCCCchhHHHHHHhCC--------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHH
Confidence 4444555555544 3444555566666 47788999999999988888888888888776 43 556666555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccc
Q 009816 485 ALISGLLLTRLVVAEVAAKFVESR 508 (524)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~ 508 (524)
+++..+ ..+...||+|+|...+.
T Consensus 443 ~~~~~i-~~~~~lPETkgr~~~eI 465 (485)
T KOG0569|consen 443 LAIFLI-YLYRYLPETKGRTPYEI 465 (485)
T ss_pred HHHHHH-HHHHhCcccCCCCHHHH
Confidence 555444 44467789998876554
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=236.91 Aligned_cols=353 Identities=19% Similarity=0.155 Sum_probs=277.1
Q ss_pred CCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhh
Q 009816 104 NGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQS 183 (524)
Q Consensus 104 ~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~ 183 (524)
+.+.+.+++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|++++..+++++++. ++++.++++|.+||+|.+
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-----~sy~~l~vAR~LQgvgsA 174 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-----NSYPMLFVARSLQGVGSA 174 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-----chhHHHHHHHHHhhhhHH
Confidence 334455899999999999999999999999999999999999999999999999997 999999999999999999
Q ss_pred cchhhHHHHHhhccccc-cccceehhhhhhhhhHHHHHHHHHHHhhh-cCchhHHHHhHHHHHHHHHHHHHhcCCCCCCC
Q 009816 184 TGWPSVVAVVGNWFGKS-KRGLIMGIWNAHTSIGNITGSLVASALLT-YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESV 261 (524)
Q Consensus 184 ~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (524)
+...+..++++|.||++ +|++++|+...+.++|.++||+.||++++ .|.+.+|++.+++.++-+.+.++.++.+..+.
T Consensus 175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 99999999999999875 47999999999999999999999999995 59999999999999998887777776433222
Q ss_pred CCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009816 262 GTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGK 341 (524)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (524)
+.. ++..++++++++|.++........++......-..++.+..+. +
T Consensus 255 ~~~-----------------------------~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~----m 301 (464)
T KOG3764|consen 255 DST-----------------------------EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLET----M 301 (464)
T ss_pred ccc-----------------------------ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHh----c
Confidence 110 0223467899999988877776666666666667788887777 6
Q ss_pred CCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhH
Q 009816 342 YLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYA 421 (524)
Q Consensus 342 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (524)
..+..+.|+.+....+...++..+.|.+.||++..+++.....+...+...... ...++....++..+..+++.+....
T Consensus 302 ~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~i-P~~~~~~~L~vp~~~l~~~i~~~da 380 (464)
T KOG3764|consen 302 FTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPI-PFATSIAQLWVPNFGLGFGIGLADA 380 (464)
T ss_pred cCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchh-HhhhhHHHHhhhhHHHHHHHHHHHH
Confidence 666669999999999999999999999999998655544433333333222221 1123444445555555666666666
Q ss_pred HHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHHHH
Q 009816 422 LITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRLVV 497 (524)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
.........++.++.- + -+..|.+.++.....++|.++||.++|.+.+. |+++...+.++..++..-+..+++.
T Consensus 381 sl~P~l~~lvd~rh~s-~-~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~~ 455 (464)
T KOG3764|consen 381 SLIPTLGYLVDPRHVS-G-FNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLRI 455 (464)
T ss_pred HHhhhhHHhcchhhcc-c-cceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666544320 0 12679999999999999999999999999998 9999888888887776666655443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-29 Score=246.98 Aligned_cols=347 Identities=19% Similarity=0.221 Sum_probs=273.7
Q ss_pred chhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchh
Q 009816 108 GTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWP 187 (524)
Q Consensus 108 ~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~ 187 (524)
++..++++.++..+...+.++++|.++||++|||+++.+.++.++..++.++....+..+.+.+++.-++.|++.+...|
T Consensus 43 S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~P 122 (524)
T PF05977_consen 43 SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNP 122 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44899999999999999999999999999999999999998877666555543233346889999999999999999999
Q ss_pred hHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 009816 188 SVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTN 266 (524)
Q Consensus 188 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (524)
+.++++.+..|+++...++++.+...++..++||.++|.+. .+|-.+.|.+.++..++. +......+..++.... +
T Consensus 123 A~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~-i~~l~~~~~~~~~~~~-~- 199 (524)
T PF05977_consen 123 AWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLIS-ILALLRWKPPPPPSSL-P- 199 (524)
T ss_pred HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcccccccccc-c-
Confidence 99999999999999999999999999999999999999988 578889999887655544 3333333322111100 0
Q ss_pred cccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChh
Q 009816 267 EEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSE 346 (524)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 346 (524)
+ +...+..+..++.+.++|.+....+..++.++........+|.+.++. +|.++.
T Consensus 200 ~---------------------e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~----l~~~a~ 254 (524)
T PF05977_consen 200 R---------------------ERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV----LGGGAS 254 (524)
T ss_pred h---------------------hhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH----hCCcHH
Confidence 0 001112334556667777777666666666666666677899999887 799999
Q ss_pred hhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHH
Q 009816 347 MAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTA 426 (524)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (524)
..|++.+..++|.++|+++.+++.+|+++++.+..+.+..+++.+.+.+ ..+.+...+.+++.|++.........+.
T Consensus 255 ~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal---~~~~~~~~~~l~l~G~~~~~~~~~~~t~ 331 (524)
T PF05977_consen 255 GYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL---SPSFWLALIALFLAGAAWIIANSSLNTL 331 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888887777766665555443 3566677777888898888888888888
Q ss_pred HHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHH
Q 009816 427 VSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~ 493 (524)
.+...| ++.+|++++++.+....+..+|..+.|.+.+. |.+.++.+.++..+++.++..
T Consensus 332 ~Q~~~P--------~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 332 VQLSVP--------DWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHhCC--------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 888887 47789999999999999999999999999998 888888777665555555444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=242.62 Aligned_cols=315 Identities=16% Similarity=0.189 Sum_probs=238.8
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
+|+++ ++.|++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+++ .+ ++++.+++.|++
T Consensus 30 ~~~s~-------~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~-----~~~~~l~~~~~~ 96 (355)
T TIGR00896 30 LGMSF-------SVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA-----PGTALLFAGTAL 96 (355)
T ss_pred hCCCH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-----ccHHHHHHHHHH
Confidence 88887 999999999999999999999999999999999999998888888777 54 788999999999
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh-c--CchhHHHHhHHHHHHHHHHHHHhc
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT-Y--GWGWSFVVPGLIIAFVGLIVFLFL 254 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~--gwr~~f~~~~~~~~~~~~~~~~~~ 254 (524)
.|++.+...+....++.|++| ++|++++++...+..+|..+++.+++.+.+ . +||+.|...+++.++. ...++
T Consensus 97 ~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~---~~~~~ 172 (355)
T TIGR00896 97 IGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA---LLAWI 172 (355)
T ss_pred HHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH---HHHHh
Confidence 999999888888888999986 689999999999999999999999888763 2 3999988776544432 22334
Q ss_pred CCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009816 255 PVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVS 334 (524)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (524)
|+.+++.+.++ . . .....++.+|+|.++...+..++....++....++|.|++
T Consensus 173 ~~~~~~~~~~~----~-------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ 225 (355)
T TIGR00896 173 PQVRRRVAANQ----T-------T----------------TRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILI 225 (355)
T ss_pred hhhccccCCCC----C-------C----------------CCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44322111000 0 0 0011245677888877766666667777788889999998
Q ss_pred hcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 009816 335 HTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLD-ARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITG 413 (524)
Q Consensus 335 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 413 (524)
+ +|+++.+.+.+.+...++.++++++.|++.||++ +|+.+..+..+.+++.+.+... ...+ .. ....+.|
T Consensus 226 ~-----~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~--~~~~l~g 296 (355)
T TIGR00896 226 S-----HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA-PMHG-LW--AWALVLG 296 (355)
T ss_pred H-----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh-hhhH-HH--HHHHHHH
Confidence 7 4899999999999999999999999999999995 5555555555555544443322 1122 11 2345678
Q ss_pred hhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 414 MFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
++.+..++.......+..++ ++.++...++.+....++..++|.+.|++.|.
T Consensus 297 ~~~g~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 297 LGQGGAFPLALTLIGLRSRQ-------AAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred HhhhhHhHHHHHHHHHhccC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777665655544332 35668889999999999999999999999887
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=273.96 Aligned_cols=341 Identities=16% Similarity=0.078 Sum_probs=255.2
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHH---HHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcch
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTV---GMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGW 186 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~ 186 (524)
...++..+++.+++.++++++|+++||+|||+++.. +.++..+..+....+ ++++.++++|+++|++.++..
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~l~~~~~l~gi~~a~~~ 126 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL-----NSVPLLFAALFLMGIHSALFG 126 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHhhc
Confidence 557888999999999999999999999999997533 222222222222232 789999999999999999999
Q ss_pred hhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 009816 187 PSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDT 265 (524)
Q Consensus 187 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (524)
|+..+++.+++++++|++++|+.+++.++|.++||++++++. ..+|++.|+. +++..+.+++..+.+|+.+......+
T Consensus 127 p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1140)
T PRK06814 127 PIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL-LMGIAVLGWLASLFIPKTGNAAPDLK 205 (1140)
T ss_pred hHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHHHHHHHHHhhCCCCCCCCCCCe
Confidence 999999999999999999999999999999999999999998 5799999844 44444444555666665433211100
Q ss_pred ccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCh
Q 009816 266 NEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSS 345 (524)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 345 (524)
.+. ...++....++.+.++|.++...+..++.++.......++|.|+++. +|.++
T Consensus 206 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~g~~~ 260 (1140)
T PRK06814 206 IDR---------------------NIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET----LGGDE 260 (1140)
T ss_pred ecc---------------------chHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----cCCch
Confidence 000 00011223567788899999888888888778788888999999987 79999
Q ss_pred hhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-----------------hcchhHHHHHHH
Q 009816 346 EMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRS-----------------YGHLSLALNIAL 408 (524)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 408 (524)
...+++.+..+++.+++.++.|++.++..+++.+..+.++..+..+.+... ....+.+..++.
T Consensus 261 ~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1140)
T PRK06814 261 NVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILID 340 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHH
Confidence 999999999999999999999999988776665554444443333322211 011344555667
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHH
Q 009816 409 MFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAAL 486 (524)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~ 486 (524)
.+++|++.+...+...+.+.+..| ++.+|+++|+.+++..++..+++.+.|.+.+. ++...+.+.+++.+
T Consensus 341 ~~~~g~~~~~~~~~~~~~~~~~~p--------~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~ 412 (1140)
T PRK06814 341 LFGLAAAGGLYIVPLFAALQAWAN--------PAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANL 412 (1140)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhCC--------cccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 777888888888888888888877 46779999999999999999999999998754 56655555555444
Q ss_pred HHH
Q 009816 487 ISG 489 (524)
Q Consensus 487 ~~~ 489 (524)
+..
T Consensus 413 ~~~ 415 (1140)
T PRK06814 413 IVA 415 (1140)
T ss_pred HHH
Confidence 333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=245.47 Aligned_cols=356 Identities=14% Similarity=0.061 Sum_probs=235.5
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhc---cccccchhHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGI---GYWGNVHSFYYYLVV 174 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~---a~~~~~~~~~~~~~~ 174 (524)
+|++. .+.|++.+.+.++..++++++|+++||+|||++++++..+.+++...... +.......+...++.
T Consensus 41 ~g~s~-------~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (420)
T PRK09528 41 NGLSG-------TDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVG 113 (420)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78777 99999999999999999999999999999999998876665544332211 100000111112233
Q ss_pred HHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHHHhc
Q 009816 175 QMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFL 254 (524)
Q Consensus 175 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~ 254 (524)
+++.|.+.....+....+..+ . .+++++.++......++|..++|++++.+.+.+|+++|++.+++.++..++.++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 191 (420)
T PRK09528 114 GIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAK 191 (420)
T ss_pred HHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhccc
Confidence 344444333333333333322 2 34678888999999999999999999998878999999998877776655544444
Q ss_pred CCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009816 255 PVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVS 334 (524)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (524)
+|.+++....+ +++ +. +.+......++.+|+|.++...+...+....+.....+.|.|+.
T Consensus 192 ~~~~~~~~~~~--~~~------~~------------~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 251 (420)
T PRK09528 192 PDAPSTAKVAN--ALG------AN------------ASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFA 251 (420)
T ss_pred ccccchhhhcc--chh------cc------------cccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHH
Confidence 43322111000 000 00 00001223456788998877666555555555555566777776
Q ss_pred hcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Q 009816 335 HTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGM 414 (524)
Q Consensus 335 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 414 (524)
+...+ .+.+..+.+.+.++..++.+++.++.|++.||+++|+.+..+..+..+...+... .++.+..+....+.++
T Consensus 252 ~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~~l~g~ 327 (420)
T PRK09528 252 SFFAT-PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF---ATGPLEVSILKLLHAF 327 (420)
T ss_pred HHHhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHH
Confidence 54111 2566677889889888999999999999999999999887777766665554432 2344555555666666
Q ss_pred hhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHH-HHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHH
Q 009816 415 FVNGPYALITTAVSADLGTHSSLKGNSRALATVTAI-IDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~ 492 (524)
..+........++.+..|+ +.+++..+. .++...+|.+++|.+.|++.|. ||+.+|...+++.++..++.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 399 (420)
T PRK09528 328 EVPFLLVGVFKYITLNFDV--------RLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLIS 399 (420)
T ss_pred HHHHHHHHHHHHHHHHcCc--------cceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Confidence 6655555555666666653 445665554 5667889999999999999998 99999998888776665554
Q ss_pred HH
Q 009816 493 TR 494 (524)
Q Consensus 493 ~~ 494 (524)
..
T Consensus 400 ~~ 401 (420)
T PRK09528 400 VF 401 (420)
T ss_pred HH
Confidence 43
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-27 Score=231.98 Aligned_cols=331 Identities=19% Similarity=0.131 Sum_probs=241.4
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCch----hhHHHHHHHHHHHHHHHhccccccchhHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLR----IFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLV 173 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr----~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (524)
+|++. .++|++.+++.++..++++++|++.||+||| +.+.+...+. .......+ ++++.+++
T Consensus 34 ~g~s~-------~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~l~i 99 (382)
T PRK11128 34 QGYTP-------ETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGA-----HSFWLLFV 99 (382)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhc-----ccHHHHHH
Confidence 77777 9999999999999999999999999999994 3333222222 22223333 78999999
Q ss_pred HHHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHH
Q 009816 174 VQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFL 252 (524)
Q Consensus 174 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~ 252 (524)
.|++.|++.+...|...+++.++ +++|+++.+......++|.++||++++++. ++|||..|++.++..++. ++..+
T Consensus 100 ~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~-~~~~~ 176 (382)
T PRK11128 100 AIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM-LLGQL 176 (382)
T ss_pred HHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH-HHHHH
Confidence 99999999998999888888876 457889999999999999999999999998 579999999877644443 33333
Q ss_pred hcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 253 FLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFY 332 (524)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (524)
..||.+++. + +++ . .++...++++++|+|.++...+..++..........++|.|
T Consensus 177 ~~~~~~~~~---~-~~~---~------------------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 231 (382)
T PRK11128 177 LRPTIMPQG---E-SRQ---Q------------------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIY 231 (382)
T ss_pred ccCCCCCcc---c-ccc---c------------------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344321110 0 000 0 00012346788999999988887777777777778888999
Q ss_pred HhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 009816 333 VSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFIT 412 (524)
Q Consensus 333 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (524)
+++ .|.++.+.+.+.....++.++..++.+++.||+++|+.+..+.....+..+.+.. .++.+..++..++.
T Consensus 232 ~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~ 303 (382)
T PRK11128 232 WQA-----AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGS---TTALPWLIVIQILH 303 (382)
T ss_pred HHH-----CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHH
Confidence 876 5899999999999888999999999999999999999988777766665544432 34556666677777
Q ss_pred HhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHH-hhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHH
Q 009816 413 GMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIID-GTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALIS 488 (524)
Q Consensus 413 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 488 (524)
|++.+...+....+..+. + ++.+++..++.+ ....+|..+||.+.|.+.|. ++ ..++..+++.+++
T Consensus 304 g~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 304 CGTFTVCHLAAMRYIAAR-P--------GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHC-C--------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 887776666665555543 2 234577888776 44567779999999999998 65 4555555544433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-27 Score=233.50 Aligned_cols=343 Identities=16% Similarity=0.130 Sum_probs=239.4
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccC-----Cchh-hHHHHHHHHHHHHHHHhccccccchhHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRL-----DLRI-FLTVGMVGTGLFTSLYGIGYWGNVHSFYYY 171 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grr~-~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 171 (524)
.|++. +++|++..+... .+..+++|+++||+ |||| .++++.++.+++..+.++. ...++++.+
T Consensus 29 ~g~~~-------~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~--~~~~~~~~l 97 (402)
T PRK11902 29 EGLDI-------QTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC--PPHAALWPL 97 (402)
T ss_pred cCCCH-------HHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc--CccchHHHH
Confidence 67777 999999766665 58999999999999 8875 7888888888777777664 112467888
Q ss_pred HHHHHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh--cCchhHHHHhHHHHHHHHHH
Q 009816 172 LVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT--YGWGWSFVVPGLIIAFVGLI 249 (524)
Q Consensus 172 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~ 249 (524)
++..++.++..+...++..+++.|++|+++|+++.++...+.++|.++++.+++.+.+ +|||..|++.+++.++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l- 176 (402)
T PRK11902 98 AGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL- 176 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH-
Confidence 8888888888888999999999999999999999999999999999999999888875 4999999998887765533
Q ss_pred HHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 009816 250 VFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWL 329 (524)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (524)
..+..||+++.... +++ ..++....+++++++|.++...+..++..........+.
T Consensus 177 ~~~~~~e~~~~~~~---~~~---------------------~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~ 232 (402)
T PRK11902 177 TTLWAPEPEVPARP---PRS---------------------LGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLS 232 (402)
T ss_pred HHHhcCCCcccccc---cch---------------------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHH
Confidence 44556654322110 000 000123346678999998887776666555444333445
Q ss_pred HHHHhhcccCCCCCChhhhhhHHHHHH-HHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHH
Q 009816 330 PFYVSHTAVDGKYLSSEMAGNLSTLFD-VGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRS-YGHLSLALNIA 407 (524)
Q Consensus 330 ~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 407 (524)
+.++.+. +|+++.+.+++....+ ++.+++.++.+++.||+++|+.+..+.....+..+.+... ....+.+....
T Consensus 233 ~~~l~~~----~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 308 (402)
T PRK11902 233 TTFLIRG----AGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMAL 308 (402)
T ss_pred HHHHHHh----cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 5556665 6999999999876655 4688999999999999999988766655544443332211 11123333333
Q ss_pred HHHH----HHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHH
Q 009816 408 LMFI----TGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLM 482 (524)
Q Consensus 408 ~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~ 482 (524)
...+ .|+..+.........+.+..| ++..++.+....++..+++.+.|.+.|. ||+..|.+.+
T Consensus 309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~ 376 (402)
T PRK11902 309 AIGIENLCGGMGTAAFVALLMALCNRSFS------------ATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTV 376 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCc------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 3333 333333334444444443333 3445666666677887777889999998 9998888887
Q ss_pred HHHHHHHHHH
Q 009816 483 AAALISGLLL 492 (524)
Q Consensus 483 ~~~~~~~~~~ 492 (524)
.+++++.++.
T Consensus 377 ~~~~~~~~~~ 386 (402)
T PRK11902 377 VIALPGLALL 386 (402)
T ss_pred HHHHHHHHHH
Confidence 7776664443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-27 Score=234.62 Aligned_cols=343 Identities=13% Similarity=0.039 Sum_probs=246.6
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCc-hhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDL-RIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQM 176 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~ 176 (524)
+|++. .|+|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..+. ++++.+++.|+
T Consensus 33 ~g~s~-------~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 100 (418)
T TIGR00889 33 LHFSG-------AEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV-----TTPAGMFPVLL 100 (418)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHH
Confidence 77777 999999999999999999999999999965 778888888888888888875 88999999999
Q ss_pred HHHHhhhcchhhHHHHHhhc--------cccccccceehhhhhhhhhHHHHHHHHHHHhhhc-CchhHHHHhHHHHHHHH
Q 009816 177 LAGLFQSTGWPSVVAVVGNW--------FGKSKRGLIMGIWNAHTSIGNITGSLVASALLTY-GWGWSFVVPGLIIAFVG 247 (524)
Q Consensus 177 l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~-gwr~~f~~~~~~~~~~~ 247 (524)
+.|++.+...+...++..++ .....|.+..| .+|.++||.+++.+... .|+ +|++.+++.++..
T Consensus 101 l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~ 173 (418)
T TIGR00889 101 ANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG 173 (418)
T ss_pred HHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH
Confidence 99998877777666654322 22234555555 46888999988877432 354 3556666665554
Q ss_pred HHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 009816 248 LIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLY 327 (524)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (524)
+ ..+.+||.|+..++++.+ ..+....+.++.+|+|+++.+.+..++..........
T Consensus 174 ~-~~~~~~e~~~~~~~~~~~-----------------------~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 229 (418)
T TIGR00889 174 V-FALTLPDIPVAKSTAKMS-----------------------IKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNI 229 (418)
T ss_pred H-HHhcCCCCCCCccccccC-----------------------HHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHH
Confidence 3 455677654321110000 0000112345678999988888877777666656667
Q ss_pred HHHHHHhhcccCCCCCC--------hhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 009816 328 WLPFYVSHTAVDGKYLS--------SEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGH 399 (524)
Q Consensus 328 ~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (524)
+.+.|+++. |.+ ....+...++..+..+++.+..|++.||+++|+.+..+.++..+...++......
T Consensus 230 ~~~~~~~~~-----g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~ 304 (418)
T TIGR00889 230 FGNGFLHEF-----GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPE 304 (418)
T ss_pred hHHHHHHHh-----cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 778888774 443 3566888899999999999999999999999999988888776665444331111
Q ss_pred h-hHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHH-hhhhhhhhhhhhhhHhhccc-----
Q 009816 400 L-SLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIID-GTGSVGAAIGPLLTGYISAT----- 472 (524)
Q Consensus 400 ~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i~~~~~g~l~~~----- 472 (524)
. +.+..++..++.|++.+...+.....+.+..| ++.++++.|+.+ ....+|.++||.+.|++.|.
T Consensus 305 ~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p--------~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~ 376 (418)
T TIGR00889 305 YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVP--------VHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYG 376 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc
Confidence 1 22344455667777777766777777788777 477899999997 56789999999999999886
Q ss_pred --ChhHHHHHHHHHHHHHHHHHHHHH
Q 009816 473 --SWTAVFTMLMAAALISGLLLTRLV 496 (524)
Q Consensus 473 --~~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
||+..|.+.+++.+++.++..++.
T Consensus 377 ~~~~~~~f~~~~~~~~i~~~l~~~~~ 402 (418)
T TIGR00889 377 TFDWQTMWLFFAGYIAILAVLFMIFF 402 (418)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 378888888877777666655544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-27 Score=212.38 Aligned_cols=336 Identities=18% Similarity=0.238 Sum_probs=269.8
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
+|++. +..|++++...+...+.+++..+++.|+|.++.+..++++.+++.++-.. .+.+.++..-.+
T Consensus 42 ~gls~-------s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~------~~~~~L~~gt~l 108 (395)
T COG2807 42 LGLSF-------SVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL------GGLPLLFLGTLL 108 (395)
T ss_pred hcccH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHH
Confidence 88887 99999999999999999999999999999999999999999999999887 578889999999
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hc-CchhHHHHhHHHHHHHHHHHHHhcC
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TY-GWGWSFVVPGLIIAFVGLIVFLFLP 255 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~-gwr~~f~~~~~~~~~~~~~~~~~~~ 255 (524)
.|.|.+...+..+++|.+.|| |+-+..+++|....++|..+++.+.-.+. +. |||....+.+.++++. ++.|. |
T Consensus 109 ~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allA-l~~Wl--P 184 (395)
T COG2807 109 AGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLA-LLIWL--P 184 (395)
T ss_pred HHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHH-HHHHh--h
Confidence 999999999999999999996 57899999999999999999999888887 44 7999999988887766 33333 4
Q ss_pred CCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009816 256 VNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSH 335 (524)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (524)
...+.+.... .. +..+-..++|+|..|.+.+.+.+....+|....|+|.++.|
T Consensus 185 q~~r~~~~~~-~~--------------------------~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~ 237 (395)
T COG2807 185 QALREQAASI-AT--------------------------KLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID 237 (395)
T ss_pred hccccccccc-cc--------------------------ccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3211110000 00 01111357999999999999999999999999999999999
Q ss_pred cccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Q 009816 336 TAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAAS-FMYCAIPALFFYRSYGHLSLALNIALMFITGM 414 (524)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 414 (524)
. |+|+.++|.+.+...+..++.++....+.+|...++.+.+. ...+.++.+-+.+ .+....++. .++.|+
T Consensus 238 ~-----G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~-~P~~~~~lw---~~llG~ 308 (395)
T COG2807 238 R-----GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL-APGQLPILW---ALLLGL 308 (395)
T ss_pred c-----CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH-hhhhHHHHH---HHHHhC
Confidence 5 99999999999999999999999999999987555544444 3444444433332 233332222 477899
Q ss_pred hhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHHHHHHHH
Q 009816 415 FVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~ 492 (524)
+.++.++.....+.....+ ++..+.-.|+.+.++++-.++||.+.|++.|. +|+..++....+.++..+..
T Consensus 309 G~G~~F~laL~li~~rs~~-------a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 309 GQGGAFPLALTLILLRSSD-------AAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred ccchHHHHHHHHHHhhcCC-------hHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 9999999888888776543 57778899999999999999999999999998 88888777766665544444
Q ss_pred H
Q 009816 493 T 493 (524)
Q Consensus 493 ~ 493 (524)
+
T Consensus 382 l 382 (395)
T COG2807 382 L 382 (395)
T ss_pred h
Confidence 4
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=268.34 Aligned_cols=343 Identities=18% Similarity=0.132 Sum_probs=255.1
Q ss_pred hhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhh
Q 009816 109 TALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPS 188 (524)
Q Consensus 109 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 188 (524)
....+++.+++.+++.++++++|+++||+|||++++++.++..+..++..++. ..++++.+++.|+++|++.+...++
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~~~~~~ 123 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAY--YLGWFWLAFAVTFLLGAQSAIYSPA 123 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHhhchH
Confidence 36689999999999999999999999999999999998877665555443320 0267999999999999999999999
Q ss_pred HHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhc----------CchhHHHHhHHHHHHHHHHHHHhcCCCC
Q 009816 189 VVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTY----------GWGWSFVVPGLIIAFVGLIVFLFLPVNP 258 (524)
Q Consensus 189 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~----------gwr~~f~~~~~~~~~~~~~~~~~~~~~~ 258 (524)
..+++.|++|+++|++++++...+..+|.++|+++++++... +|++.+.+.++...+..++..+.+|+.+
T Consensus 124 ~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1146)
T PRK08633 124 KYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVP 203 (1146)
T ss_pred HHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999999999998743 3555554544444444444555567665
Q ss_pred CCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009816 259 ESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAV 338 (524)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (524)
+...... + +. . ..........++.++++|.++...+..++..........++|.|+.+.
T Consensus 204 ~~~~~~~-~-~~------~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 262 (1146)
T PRK08633 204 AAAPEVF-D-KK------K-----------YLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV-- 262 (1146)
T ss_pred CCCcccc-c-cc------c-----------cccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--
Confidence 4322110 0 00 0 000011233456678888888777777777777777788899999887
Q ss_pred CCCCCChh-hhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhh
Q 009816 339 DGKYLSSE-MAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVN 417 (524)
Q Consensus 339 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (524)
+|++.. ..+++.+...++.+++.++.+++.||+++++.+.++.++.+++.+++... .+.+..++..++.|++.+
T Consensus 263 --~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 263 --LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA---PSLASVLVLFFLFGFSAG 337 (1146)
T ss_pred --hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHH
Confidence 799988 89999999999999999999999999998887777666665555444332 345556667777888887
Q ss_pred hhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHHH
Q 009816 418 GPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAALI 487 (524)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~~ 487 (524)
...+...+.+.+..| ++.+|+++|+.+++..+|..+++.+.+.+... ++...+++.+.+.++
T Consensus 338 ~~~~~~~~~~~~~~p--------~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 338 LFIVPLNALIQFRAP--------EKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HhhHHHHHHHhhcCC--------ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 777777777777766 36789999999999999998888777666443 344455554444433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=225.90 Aligned_cols=361 Identities=12% Similarity=0.067 Sum_probs=254.7
Q ss_pred HHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhh-HhHHHHHHHHHHHhhh
Q 009816 49 SYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTAL-LGELDLAFLSIYAGGM 127 (524)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~g~~~s~~~l~~~~~~ 127 (524)
...-.|.+.+++.|.+.+| +|+++ +| .|.+.++++.+|+++.
T Consensus 37 F~~e~R~n~s~a~p~L~~e------------------------------lglT~-------~qv~G~I~s~F~ysYal~q 79 (511)
T TIGR00806 37 FMAQFRPGESFITPYLLTV------------------------------LNFTE-------ETVTNEIIPVLPYSHLAVL 79 (511)
T ss_pred HHHHhhchHHHHHHHHHHH------------------------------cCCCH-------HHhcchHHHHHHHHHHHHH
Confidence 3444699999999999988 89988 88 9999999999999999
Q ss_pred hhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhccccccccceeh
Q 009816 128 FFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMG 207 (524)
Q Consensus 128 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 207 (524)
++.|+++||+|.|+++.++.+.+++..++.+++ +++..+.+.|++.|++.|... +...++..|+|+++|+++.+
T Consensus 80 Ip~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa-----~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~rats 153 (511)
T TIGR00806 80 VPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG-----TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAA 153 (511)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHH
Confidence 999999999999999999999999999999997 899999999999999999999 99999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCchhHHHHh--HHHHHHHHHHHHHhcCCCCCCCCCCCccc-c-ccCCccccCCCccc
Q 009816 208 IWNAHTSIGNITGSLVASALLTYGWGWSFVVP--GLIIAFVGLIVFLFLPVNPESVGTDTNEE-D-ESLSPKKIGEGVTQ 283 (524)
Q Consensus 208 ~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 283 (524)
+..++..+|.++++++++++..+|||+-+.+. .+.+..++++..+++|..++..-..+.+. + ......+...+.+.
T Consensus 154 i~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~ 233 (511)
T TIGR00806 154 YSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG 233 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCc
Confidence 99999999999999999996688999865443 33444555667777885433211000000 0 00000000000000
Q ss_pred --cc--cc--chhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHH
Q 009816 284 --PL--LR--RETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDV 357 (524)
Q Consensus 284 --~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 357 (524)
.. .+ .....+.....++...+||.+....+...+....++...++.-..-.+. .+-.+..-|.+-++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v----~~~~~~yNG~veA~~tl 309 (511)
T TIGR00806 234 GKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTL----DESLNKYNGAVDAASTL 309 (511)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHc----CCCccccCCHHHHHHHH
Confidence 00 00 0011122344566778899998888888888777777776666555554 12112245666677777
Q ss_pred HHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccC
Q 009816 358 GGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSL 437 (524)
Q Consensus 358 ~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (524)
.+.+..+..|++-.++.+--.+.++.....-+.+++. ....++.|...+..++++..+....+.....++..+.
T Consensus 310 lga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~-m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~----- 383 (511)
T TIGR00806 310 LGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFW-MSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLS----- 383 (511)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhh-hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 7788888999986665332233333222222222222 2335688888889999988888887777777777765
Q ss_pred CCCccchhHHHHHHHhhhhhhhhhhhhh
Q 009816 438 KGNSRALATVTAIIDGTGSVGAAIGPLL 465 (524)
Q Consensus 438 ~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 465 (524)
.+..|...|+++++..+-..+-..+
T Consensus 384 ---~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 384 ---KELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred ---ccceEEEEecHHHHHHHHHHheEEE
Confidence 3556888888887765555444433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=217.11 Aligned_cols=358 Identities=15% Similarity=0.166 Sum_probs=285.0
Q ss_pred HHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHH
Q 009816 39 VLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLA 118 (524)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~ 118 (524)
.++.+...++...+......+++|.+++. |+++. .|.+++..+
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~------------------------------f~ls~-------~~a~liqfa 56 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEV------------------------------FDLTY-------FEASLIQFA 56 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHH------------------------------hCccH-------HHHHHHHHH
Confidence 34455555666777778888899999888 77777 999999999
Q ss_pred HHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhccc
Q 009816 119 FLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFG 198 (524)
Q Consensus 119 ~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~ 198 (524)
++.+|.+.+++.|++.+|+|+|+.+++++.+++++..++.=+ ....++..++++-++.|.|.+...+++..+++...+
T Consensus 57 ff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pA--a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~ 134 (422)
T COG0738 57 FFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPA--ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGK 134 (422)
T ss_pred HHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCC
Confidence 999999999999999999999999999999999999998522 114889999999999999999999999999999999
Q ss_pred cccccceehhhhhhhhhHHHHHHHHHHHhhh-------------------c-CchhHHHHhHHHHHHHHHHHHHhcCCCC
Q 009816 199 KSKRGLIMGIWNAHTSIGNITGSLVASALLT-------------------Y-GWGWSFVVPGLIIAFVGLIVFLFLPVNP 258 (524)
Q Consensus 199 ~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-------------------~-gwr~~f~~~~~~~~~~~~~~~~~~~~~~ 258 (524)
+++..+.+++.+..+++|.+++|++++.+.. . .|+++|...+...+++.+..... +.|
T Consensus 135 ~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~--k~p 212 (422)
T COG0738 135 PESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLS--KLP 212 (422)
T ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc--cCC
Confidence 9889999999999999999999999987753 1 38888888877766664443322 112
Q ss_pred CCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009816 259 ESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAV 338 (524)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (524)
..+...+++. +++.....+++++|+++...++.+++.........|++.|+.+.
T Consensus 213 ~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-- 266 (422)
T COG0738 213 DLQVAAPSLG------------------------ASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-- 266 (422)
T ss_pred cCCccccccc------------------------ccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc--
Confidence 2111111000 00011356889999999999999999999999999999999996
Q ss_pred CCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhh
Q 009816 339 DGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNG 418 (524)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (524)
.|.+..+++...+.+.++.++|++++.++..|+...|.+....+...+.++..... .+ .+.+...++.|++.+.
T Consensus 267 --~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~---~g-~v~~~~l~~ig~F~si 340 (422)
T COG0738 267 --LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI---GG-VVALYALFLIGLFNSI 340 (422)
T ss_pred --CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh---cC-hHHHHHHHHHHHHhHH
Confidence 69999999999999999999999999999999999998877665555444444332 22 4556677888999999
Q ss_pred hhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHH
Q 009816 419 PYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFT 479 (524)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~ 479 (524)
.+|.+.+...+.++.+. ...|....+..+|+++-|++.|++.|. +....+.
T Consensus 341 mfPTIfslal~~l~~~t----------s~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 341 MFPTIFSLALKNLGEHT----------SVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred HHHHHHHHHHhccCccc----------cccceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999988432 222334455678999999999999998 5555554
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=232.21 Aligned_cols=355 Identities=13% Similarity=0.049 Sum_probs=244.8
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHh---ccccccchhHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYG---IGYWGNVHSFYYYLVV 174 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~ 174 (524)
+|+++ .+.|++.+.+.++..++++++|+++||+|||+.++.+.+..+++..... +......+.+..+++.
T Consensus 33 ~g~s~-------~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (396)
T TIGR00882 33 NGLSK-------TDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVG 105 (396)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 67776 9999999999999999999999999999999999887766655443221 1100000233445677
Q ss_pred HHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHHHhc
Q 009816 175 QMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFL 254 (524)
Q Consensus 175 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~ 254 (524)
+++.|++.+...+....+..+.. ++++..++......++|.++||++++.+.+++||.+|++.+++.++..++.+...
T Consensus 106 ~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 183 (396)
T TIGR00882 106 GLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAK 183 (396)
T ss_pred HHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhC
Confidence 88999998888888888777753 3345677888888899999999999988888999999998888887765554444
Q ss_pred CCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009816 255 PVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVS 334 (524)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (524)
||.|+++.. + + ..+ .+ +.+++..+.++.+|+|.++...+..++....+.....+.+.|++
T Consensus 184 ~~~~~~~~~-~-~--~~~-----~~-----------~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~ 243 (396)
T TIGR00882 184 PKAPSSATV-A-N--ALG-----AN-----------ASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFT 243 (396)
T ss_pred CCCchhhhh-h-c--ccc-----cc-----------cCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443321100 0 0 000 00 00011234577889999887766666655555566667888887
Q ss_pred hcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Q 009816 335 HTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGM 414 (524)
Q Consensus 335 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 414 (524)
+...+ .+.+....+...+...+...++.+..+++.||+++|+.+.++..+.++....... ..+.+..+...++.|+
T Consensus 244 ~~~~~-~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~---~~~~~~~~~~~~l~g~ 319 (396)
T TIGR00882 244 SFFAT-PQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF---ATTALEVVILKMLHAF 319 (396)
T ss_pred Hhccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHH
Confidence 75210 2455667788888888888999999999999999999888877766665544332 2344555555566665
Q ss_pred hhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHH-HHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHH
Q 009816 415 FVNGPYALITTAVSADLGTHSSLKGNSRALATVTAI-IDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~ 492 (524)
+.............+..+ ++.+++..+. .+....+|+++++.+.|++.|. ||+.+|.+.+++.++..++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~--------~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 320 EVPFLLVGCFKYITSQFD--------VRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHHHHHHHHHHHhCC--------cceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 543333333333333333 3445555554 5678899999999999999998 99999999888877666554
Q ss_pred H
Q 009816 493 T 493 (524)
Q Consensus 493 ~ 493 (524)
.
T Consensus 392 ~ 392 (396)
T TIGR00882 392 V 392 (396)
T ss_pred H
Confidence 3
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-28 Score=217.17 Aligned_cols=414 Identities=16% Similarity=0.168 Sum_probs=290.6
Q ss_pred ccccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchh
Q 009816 31 SFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTA 110 (524)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 110 (524)
.+.+.+|...+....+++...+.....+.+.|.+... .|.+. .
T Consensus 71 gfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~------------------------------w~~s~-------~ 113 (528)
T KOG0253|consen 71 GFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEV------------------------------WGPSE-------G 113 (528)
T ss_pred CcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhh------------------------------hchhh-------h
Confidence 4678899999999999999999988888888888777 66666 8
Q ss_pred hHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHH
Q 009816 111 LLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVV 190 (524)
Q Consensus 111 ~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 190 (524)
|..++......+..+++..||..+|++|||+.+.+..+...+...+.+.+ +|+..+++.|.+.|+|.|+ .|...
T Consensus 114 q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s-----pnf~~L~~f~~l~~~g~gg-~pv~~ 187 (528)
T KOG0253|consen 114 QAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS-----PNFASLCVFRALWGFGVGG-LPVDS 187 (528)
T ss_pred hhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC-----CCeehhhHHHHHHhccCCC-ccHhH
Confidence 99999999999999999999999999999999999999999999999997 9999999999999999998 78888
Q ss_pred HHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 009816 191 AVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEED 269 (524)
Q Consensus 191 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (524)
++-.|..|..+|...+-.. ..+.+|.++...+...+. .+||||.....+....+ .....+++||+|+....+.++++
T Consensus 188 ~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~-~a~f~~w~~ESpRf~~~~G~~~k 265 (528)
T KOG0253|consen 188 AIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMF-AARFLVWVYESPRFYLAKGDDYK 265 (528)
T ss_pred HHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH-HHHHHhhcccCcchhhhcCChHH
Confidence 8999999998888877666 999999999999988777 78999988777754444 45677889999998766666555
Q ss_pred ccCCcccc----CCCccc---------ccccch-------h-hhhhhhhhHHHHhcCCCc----HHHHHHHHHHHHHHHH
Q 009816 270 ESLSPKKI----GEGVTQ---------PLLRRE-------T-KIEEKAVGFIEAWKIPGV----APFALCLFFAKLVAYT 324 (524)
Q Consensus 270 ~~~~~~~~----~~~~~~---------~~~~~~-------~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 324 (524)
+....++. +.+... ...+++ . ..++...+...++ .|.+ ..+....+...+.+++
T Consensus 266 AletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLl-sp~lrkttlllw~iwfgnafsyyg 344 (528)
T KOG0253|consen 266 ALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLL-SPKLRKTTLLLWRIWFGNAFSYYG 344 (528)
T ss_pred HHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhc-ChHHHHHHHHHHHHHHhhHHHHHH
Confidence 42211110 000000 000000 0 0011112222222 2222 2222333344444444
Q ss_pred HHHHHHHHHhhccc-CC------------C--CCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 009816 325 FLYWLPFYVSHTAV-DG------------K--YLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIP 389 (524)
Q Consensus 325 ~~~~~~~~~~~~~~-~~------------~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 389 (524)
.........+.-.. +. . ..+...--.=..+..+....|.++.+++.||+|||+.+...++++.+.
T Consensus 345 ~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~if 424 (528)
T KOG0253|consen 345 SVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIF 424 (528)
T ss_pred HHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 43333222221100 00 0 001000001134556778899999999999999999999999888887
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhh
Q 009816 390 ALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYI 469 (524)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 469 (524)
.+.+... .+.....+..+...++..+.+...+.+.++.+|+ ..|+++.|....+..+|+++.|.++ ..
T Consensus 425 lfll~~c---~~rn~~tvllf~arafisg~fqvaYvYtPEVyPT--------avRatgvGtcSsmaRIggI~~p~iA-~~ 492 (528)
T KOG0253|consen 425 LFLLTTC---KTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPT--------AVRATGVGTCSSMARIGGIFSPVIA-MR 492 (528)
T ss_pred HHHHHHh---cCcchhHHHHHHHHHHHhchheEEEEecCcccch--------hhhhcchhhhhhHHhhhhhhhhHHH-HH
Confidence 7666542 2223345556667778888888889999999986 6679999999999999999999998 44
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009816 470 SATSWTAVFTMLMAAALISGLLLTRLVVAEVAAK 503 (524)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (524)
.+.+-..+..+.+++++++.+..++ .+-|+|.|
T Consensus 493 ~e~s~sl~i~vy~~~~ilagIavcf-fPiEtkGR 525 (528)
T KOG0253|consen 493 AELSTSLPIFVYGALFILAGIAVCF-FPIETKGR 525 (528)
T ss_pred hccceeehHHHHHHHHHHHHHHhee-eeeccCCC
Confidence 4444555556666666666665553 44555554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=231.53 Aligned_cols=338 Identities=17% Similarity=0.173 Sum_probs=248.0
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhccccc----CCchh-hHHHHHHHHHHHHHHHhccccc-cchhHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDR----LDLRI-FLTVGMVGTGLFTSLYGIGYWG-NVHSFYYY 171 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grr~-~l~~~~~~~~~~~~~~~~a~~~-~~~~~~~~ 171 (524)
+|+++ .+.|++.++..+..++..|+.|+++|| +|||| .++.+.+..+++.+++...... ....+..+
T Consensus 30 ~g~s~-------~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 102 (437)
T TIGR00792 30 LGLSA-------AFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYA 102 (437)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 78887 999999999999999999999999998 67754 6777888888887777664110 01235677
Q ss_pred HHHHHHHHHhhhcchhhHHHHHhhcc-ccccccceehhhhhhhhhHHHHHHHHHHHhh--------hcCchhHHHHhHHH
Q 009816 172 LVVQMLAGLFQSTGWPSVVAVVGNWF-GKSKRGLIMGIWNAHTSIGNITGSLVASALL--------TYGWGWSFVVPGLI 242 (524)
Q Consensus 172 ~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~--------~~gwr~~f~~~~~~ 242 (524)
++.+++.+++.+...++..++..|.. ++++|++..++.+.+..+|..+++.+.+.+. ..+||+.+.+.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l 182 (437)
T TIGR00792 103 YITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALI 182 (437)
T ss_pred HHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHH
Confidence 88889999998888888888889987 4688999999999888888877766554443 24899999999988
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHH
Q 009816 243 IAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVA 322 (524)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (524)
.++..++.++..||++++....+ + + ..+....++.++++|.++...+..++.....
T Consensus 183 ~~~~~~~~~~~~~e~~~~~~~~~---~-------~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (437)
T TIGR00792 183 GVVSLIICFFGTKERYSEIPKNI---E-------K--------------KLSLKQIFKALFKNDQLLILCLAYLFYNLAF 238 (437)
T ss_pred HHHHHHHHHcCCEecCCCCCccc---c-------c--------------CCCHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 88877766677776542110000 0 0 0001234567788999888877777777766
Q ss_pred HHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhH
Q 009816 323 YTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSL 402 (524)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (524)
.....+.+.|.++. .+ ++...+.+.....++.+++.++.+++.||+++|+.+..+..+..++.+.+... ..+.
T Consensus 239 ~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~ 311 (437)
T TIGR00792 239 NIKNGVQVYYFTYV----LG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA--GSNL 311 (437)
T ss_pred HHHcchhheeEeee----cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--chhH
Confidence 66666666666655 45 45566777777889999999999999999999999888877666655544332 2344
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-Ch
Q 009816 403 ALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SW 474 (524)
Q Consensus 403 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~ 474 (524)
+...+..++.|++.+...+...+..++..+.. +.+..++.+|++.|+.+.+..+|..+++.+.|++.+. ||
T Consensus 312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 312 PLILVLIILAGFGQNFVTGLVWALVADTVDYG-EWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45555666777877777777777777665532 2223346679999999999999999999999999875 44
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=221.98 Aligned_cols=311 Identities=14% Similarity=0.073 Sum_probs=231.0
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccC-----Cchhh-HHHHHHHHHHHHHHHhccccccchhHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRL-----DLRIF-LTVGMVGTGLFTSLYGIGYWGNVHSFYYY 171 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grr~~-l~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 171 (524)
+|++. +++|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++..++.++. .+..+++.+
T Consensus 18 ~g~s~-------~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~--~~~~~l~~l 86 (356)
T TIGR00901 18 KNVSL-------KTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL--VPSTDLPLL 86 (356)
T ss_pred cCCCH-------HHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC--CcchhHHHH
Confidence 78887 999998655 555555 99999999998 89886 567777777776666664 123567777
Q ss_pred HHHHHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcC--------chhHHHHhHHH
Q 009816 172 LVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYG--------WGWSFVVPGLI 242 (524)
Q Consensus 172 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~g--------wr~~f~~~~~~ 242 (524)
....++.+++.+...++..+++.|++|+|+|+++.++...+..+|.++++.+++.+. ..+ ||.+|++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~ 166 (356)
T TIGR00901 87 AGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALL 166 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHH
Confidence 888888898888889999999999999999999999999999999999999998887 567 99999998887
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCC---cHHHHHHHHHHH
Q 009816 243 IAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPG---VAPFALCLFFAK 319 (524)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 319 (524)
.++..+..++..||+++..+. + + + +.++....+++++++|. ++...+..++..
T Consensus 167 ~l~~~~~~~~~~~e~~~~~~~-~---~------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (356)
T TIGR00901 167 ILPGLLVTLFLAKEPQEDASV-P---K------------------P--LTQAVLKPIREFFQRKNMIQALLLLLLIVLYK 222 (356)
T ss_pred HHHHHHHHHHhccCCCccccc-c---h------------------h--HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 766544444445553221100 0 0 0 00011234556677775 666666666667
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHH-HHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 009816 320 LVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFD-VGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYG 398 (524)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (524)
........++|.|+++ +|+++.+.+.+....+ ++.+++.++.|++.||+++|+.+..+.++.++..........
T Consensus 223 ~~~~~~~~~~~~~l~~-----~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~ 297 (356)
T TIGR00901 223 LGDSAATVLTTLFLLD-----MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLAS 297 (356)
T ss_pred HHHHHHHHHHHHHHHH-----cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777888999999987 4999999998887666 577899999999999999999887777766655444332211
Q ss_pred c--------hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhh
Q 009816 399 H--------LSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGS 456 (524)
Q Consensus 399 ~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 456 (524)
. .+.+......++.+++.+...+...+...+..|+ +.+|+..|+.+...+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--------~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 298 NGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP--------KFGATQMALLSSLSA 355 (356)
T ss_pred cCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC--------CccHHHHHHHHHHHh
Confidence 1 2334455566677888888889999999998884 677999998877654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=223.69 Aligned_cols=376 Identities=11% Similarity=0.074 Sum_probs=247.0
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhccccc-CCchhhHHHHHHHHHHHHHHHhccccccchh-HHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDR-LDLRIFLTVGMVGTGLFTSLYGIGYWGNVHS-FYYYLVVQ 175 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~r 175 (524)
+|++. ++.+++.+.+.....+..+++|+++|| +||||+++++.++++++.++++++ .+ ...+++.|
T Consensus 45 lg~~~-------~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~-----~~~~~ll~~~~ 112 (489)
T PRK10207 45 LGFSQ-------EQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS-----LLKPDLIFIAL 112 (489)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh-----ccchhHHHHHH
Confidence 77776 888999999998888889999999999 999999999999999999999986 44 33456899
Q ss_pred HHHHHhhhcchhhHHHHHhhccccc--cccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHH
Q 009816 176 MLAGLFQSTGWPSVVAVVGNWFGKS--KRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFL 252 (524)
Q Consensus 176 ~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~ 252 (524)
+++|+|.|...|...+++.|.+|++ +|++++++++.+.++|..+||.+++++. ++|||+.|++.++ +++.+++.+.
T Consensus 113 ~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~ 191 (489)
T PRK10207 113 GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYF 191 (489)
T ss_pred HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999999999877 4578999999999999999999999998 6799999999544 5555555555
Q ss_pred hcCCCCCCCCCCCccccccCCcccc---------------CCCcccccccchh---------hhhhhhhhHHHHhcCCCc
Q 009816 253 FLPVNPESVGTDTNEEDESLSPKKI---------------GEGVTQPLLRRET---------KIEEKAVGFIEAWKIPGV 308 (524)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 308 (524)
..++..++...++++++ .+..... ....... ..... ..........+..|+|.+
T Consensus 192 ~~~~~~~~~~~~~~~~~-~d~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~ 269 (489)
T PRK10207 192 ACRGMVKDIGSEPDHKP-MSFSKLLLVLLGSVVMIFVCAWLMHNVEV-ANLVLIVLSIVVTIIFFREAFKLDKTGRNKMF 269 (489)
T ss_pred HcchhhcccCCCCCccc-hhhhhHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 55533222110110000 0000000 0000000 00000 000000000134444443
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHhhccc-CCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhH-------H
Q 009816 309 APFALC--LFFAKLVAYTFLYWLPFYVSHTAV-DGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARA-------I 378 (524)
Q Consensus 309 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~-------~ 378 (524)
....+. ..+.+..+....+.++.+.++... +..|+.. ....+.....+..++..++.+++.||+++|+ .
T Consensus 270 ~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k 348 (489)
T PRK10207 270 VAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMK 348 (489)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 332222 333444455555778888875310 0012111 2233444455667678888899999999886 3
Q ss_pred HHHHHHHHHHHHHHHH----Hhh---cchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHH
Q 009816 379 TAASFMYCAIPALFFY----RSY---GHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAII 451 (524)
Q Consensus 379 ~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 451 (524)
+.++.++.+++.+.+. ... ...+.++.+...++.|++.....++....+.+..| ++.+|.++|+.
T Consensus 349 ~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP--------~~~~g~~~g~~ 420 (489)
T PRK10207 349 FTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVP--------QHLMGFILGMW 420 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCh--------HHHHHHHHHHH
Confidence 5566666555543321 111 12346667778888999999999998999988887 47789999999
Q ss_pred HhhhhhhhhhhhhhhHhhcc----------c-ChhHHHHHHHHHHHHHHHHHHHHHH
Q 009816 452 DGTGSVGAAIGPLLTGYISA----------T-SWTAVFTMLMAAALISGLLLTRLVV 497 (524)
Q Consensus 452 ~~~~~~g~~i~~~~~g~l~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
+...++|+.++..+...... . .+...|...++..+++.++.....+
T Consensus 421 ~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 421 FLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888765521 1 2566777777766666665554433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-25 Score=215.99 Aligned_cols=372 Identities=14% Similarity=0.052 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHH--HH
Q 009816 40 LIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGEL--DL 117 (524)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~--~s 117 (524)
+..++..|+.+........+..|...++ .|.+. +++|++ .+
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~------------------------------~g~~~-------~~iGl~~~~~ 45 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRE------------------------------DGAPL-------TALAFLPLVG 45 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------------------cCCCH-------HHHHHHHHHH
Confidence 4455556666666666666677777677 77777 999997 46
Q ss_pred HHHHHHHhhhhhh-hcccccCCchhhHHHHHHHH-HHHHHHHh-ccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHh
Q 009816 118 AFLSIYAGGMFFS-GHLGDRLDLRIFLTVGMVGT-GLFTSLYG-IGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVG 194 (524)
Q Consensus 118 ~~~l~~~~~~~~~-G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~-~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~ 194 (524)
...+...+.++++ ++..||+||||..++.+.+. +......+ +. .......+++..-++.++..+...+...++..
T Consensus 46 l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~ 123 (390)
T TIGR02718 46 LPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVG--PDVAGAGWAVGLLACASLASATQDIATDGMAA 123 (390)
T ss_pred HHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888888 55799999999876555332 22222222 21 00122334455556666777778888888888
Q ss_pred hccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCC
Q 009816 195 NWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLS 273 (524)
Q Consensus 195 ~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (524)
|..++++++...+....+..+|.++|+.+.+++. ++|||.+|++.+++.++..+..++..|+++++. + + +
T Consensus 124 ~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~-~-~-~------ 194 (390)
T TIGR02718 124 EHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASP-E-A-P------ 194 (390)
T ss_pred HhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCcc-c-c-c------
Confidence 9888888888888888888999999998887777 679999999999887776555444333322110 0 0 0
Q ss_pred ccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHH
Q 009816 274 PKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLST 353 (524)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 353 (524)
+++..++++.+|+|.++......++..........+.+.|+++ .|+++++.+.+..
T Consensus 195 -------------------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-----~G~s~~~ig~~~~ 250 (390)
T TIGR02718 195 -------------------LARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-----AGWPLEWIGRLGM 250 (390)
T ss_pred -------------------hhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-----cCCCHHHHHHHHh
Confidence 0012235678899998888877777777777788889999988 4999999999888
Q ss_pred HHHH-HHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 009816 354 LFDV-GGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYG---HLSLALNIALMFITGMFVNGPYALITTAVSA 429 (524)
Q Consensus 354 ~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (524)
..++ ..+++.++.|++.||+++|+.+..+..+.....+....... ..+.........+.++..+...+.......+
T Consensus 251 ~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 330 (390)
T TIGR02718 251 AGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMR 330 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7764 66677899999999999999887766554332222221110 1122222333334445556666666666666
Q ss_pred hhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHH
Q 009816 430 DLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGL 490 (524)
Q Consensus 430 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~ 490 (524)
..++ ++.+++..++.+...++|..++|.+.|++.|. |++..|...+++.+++.+
T Consensus 331 ~~~~-------~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 331 FAGD-------GDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HhCc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 5542 26679999999999999999999999999998 888888887766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-27 Score=238.92 Aligned_cols=380 Identities=17% Similarity=0.168 Sum_probs=257.7
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
.+.+|+.+.+.++..+++++.|+++|++|||+.++++.+++.++.+++++| +|+.+++++|+++|+|.|......
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-----~~~~~l~~GR~l~G~g~G~~~~~~ 163 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-----PSWYQLIVGRILTGLGVGGASVLA 163 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhccchhhhhhcc
Confidence 466999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred HHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh--cCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT--YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNE 267 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (524)
..+++|..|++.||...+..+....+|..++..++....+ ++||..+.+..+.+++..+. .+++||+|++..+..+.
T Consensus 164 piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~ 242 (513)
T KOG0254|consen 164 PVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRL 242 (513)
T ss_pred hhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCCh
Confidence 9999999999999999999999999999999777766654 48999999988888877666 88999999987654443
Q ss_pred ccccCCccccCC----Ccccc--cccch--hhh--hhhhhhHHHHhcCCCcHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 009816 268 EDESLSPKKIGE----GVTQP--LLRRE--TKI--EEKAVGFIEAWKIPGVAP-----FALCLFFAKLVAYTFLYWLPFY 332 (524)
Q Consensus 268 ~~~~~~~~~~~~----~~~~~--~~~~~--~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 332 (524)
++.......... +.... ..+.+ .+. .+....+.++++ |..+. ..+..+..........++.+.+
T Consensus 243 ~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i 321 (513)
T KOG0254|consen 243 EEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTI 321 (513)
T ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHH
Confidence 333211111000 00000 00000 000 001111333333 32222 2222222333334445667777
Q ss_pred HhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcch---------hHH
Q 009816 333 VSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHL---------SLA 403 (524)
Q Consensus 333 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 403 (524)
++.. |.+... .....+.++..+++.+++.++.||+|||+.++.+...+.++.+++....... ..+
T Consensus 322 f~~~-----g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (513)
T KOG0254|consen 322 FKSA-----GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGW 395 (513)
T ss_pred HHhc-----CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhH
Confidence 7664 555433 4555667777888888889999999999999999888888777665432111 122
Q ss_pred HHHHHHHHHHhhhhhhhHHHHH-HHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHH
Q 009816 404 LNIALMFITGMFVNGPYALITT-AVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTML 481 (524)
Q Consensus 404 ~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~ 481 (524)
..++..+++-..++....+... ...|.+| .+.|+.+.++....+.+...+-......+.+. +....|...
T Consensus 396 ~~~~~~~~~v~~f~~g~g~v~w~~~sEifp--------~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f 467 (513)
T KOG0254|consen 396 LAIVFLCLFIFSFAIGWGPVPWVIVSEIFP--------LRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYF 467 (513)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhccCc--------HhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 2333333333333333444444 5566666 47778888888888777666555444444433 335566666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 009816 482 MAAALISGLLLTRLVVAEVAAKFVESRSQ 510 (524)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
++++.+......++..+|+|++..++.++
T Consensus 468 ~~~~~~~~~~fv~~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 468 GGICLLSLIIFVFFFVPETKGLTLEEINE 496 (513)
T ss_pred HHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence 66666665534556678888887776543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-28 Score=225.43 Aligned_cols=432 Identities=16% Similarity=0.145 Sum_probs=290.5
Q ss_pred cccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhh
Q 009816 32 FKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTAL 111 (524)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (524)
..+++...+.+...+++.+..|...++.+.+.+... |+.+... ..+.....
T Consensus 35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~l--------------Y~~~~~~---------------~g~~ps~i 85 (538)
T KOG0252|consen 35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYL--------------YYHGDES---------------GGHYPSGV 85 (538)
T ss_pred hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHH--------------hcCCCCC---------------CCcCCchH
Confidence 345666777888889999999999999987766544 3333111 11122366
Q ss_pred HhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccc--hhHHHHHHHHHHHHHhhhcchhhH
Q 009816 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNV--HSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 112 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
.+.+..+-.+|..+|+++.|+++||+|||+++...++++.+++++++++..... .-..++...|++.|+|.|+-+|.+
T Consensus 86 ~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlS 165 (538)
T KOG0252|consen 86 LALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLS 165 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcch
Confidence 788899999999999999999999999999999999999999998887633222 346788999999999999999999
Q ss_pred HHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh-----c-----------CchhHHHHhHHHHHHHHHHHHHh
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT-----Y-----------GWGWSFVVPGLIIAFVGLIVFLF 253 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-----~-----------gwr~~f~~~~~~~~~~~~~~~~~ 253 (524)
.++.+|...++.||...+...+..+.|...|.+++-.+.. + =||..|.+.+++++++ +...+.
T Consensus 166 AtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~-ly~Rl~ 244 (538)
T KOG0252|consen 166 ATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV-LYFRLK 244 (538)
T ss_pred HHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH-HHhhhc
Confidence 9999999999999999999888888888888777655531 1 2999998866655544 666777
Q ss_pred cCCCCCCCCCCCccccc-cCCcccc-CCCccccc-ccc-hhhhhhhhhhHHHHhc---CCCcHHHHHHHHHHHHHHHHHH
Q 009816 254 LPVNPESVGTDTNEEDE-SLSPKKI-GEGVTQPL-LRR-ETKIEEKAVGFIEAWK---IPGVAPFALCLFFAKLVAYTFL 326 (524)
Q Consensus 254 ~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~-~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 326 (524)
+||+++......++.+. ....++. ....+... .+. ....++....+.+.+. -++....+...|+.-.+++...
T Consensus 245 M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~n 324 (538)
T KOG0252|consen 245 MPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQN 324 (538)
T ss_pred CCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 89887665221111000 0000000 00000000 000 0001111111222222 2344455666777777788887
Q ss_pred HHHHHHHhhcccCCCCCChhhhhh--------HHHHH-HHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 009816 327 YWLPFYVSHTAVDGKYLSSEMAGN--------LSTLF-DVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSY 397 (524)
Q Consensus 327 ~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~-~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (524)
.+....++.. |+.+..... ...+. ..+.+.|..+...++|++||++..+.++.++.+..+++...+
T Consensus 325 L~~s~I~~~i-----g~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y 399 (538)
T KOG0252|consen 325 LFQSVIFSAI-----GVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPY 399 (538)
T ss_pred cHHHHHHHhh-----ccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCc
Confidence 8888887764 444433322 11222 233344666677889999999999999999988887776543
Q ss_pred c-chhHHHHHHHHHHHHh-hhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcc----
Q 009816 398 G-HLSLALNIALMFITGM-FVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISA---- 471 (524)
Q Consensus 398 ~-~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~---- 471 (524)
. ..+....+++..+..+ +..+....+....++.+| .+.|+++.|+..+.+-.|++++.....++.+
T Consensus 400 ~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FP--------arvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp 471 (538)
T KOG0252|consen 400 NQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFP--------ARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYP 471 (538)
T ss_pred ccccccCceeehHHHHHHHHhcCCCceeEEeehhhch--------HHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCC
Confidence 3 1122222233322222 223334444455566666 4889999999999999999999999999998
Q ss_pred -c-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 009816 472 -T-SWTAVFTMLMAAALISGLLLTRLVVAEVAAKFVESR 508 (524)
Q Consensus 472 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (524)
. +.+.++++.+++++++.+..+++ +|++++..++.
T Consensus 472 ~~~g~~~v~~i~~~~~~~gi~~T~l~--pEtk~~~leei 508 (538)
T KOG0252|consen 472 PNIGVRNVFIILAGCMLLGILFTLLI--PETKGKSLEEI 508 (538)
T ss_pred ccccchHHHHHHHHHHHHhHheeEEe--ecccccCHHHh
Confidence 4 88899999999988877766543 48887776655
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=208.14 Aligned_cols=342 Identities=18% Similarity=0.212 Sum_probs=221.8
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
.-.|.+.+.|+++..+.++.+|.++||+|||.++++|++..++..++.+.+ +|+..+.++|++.|+..|-. ...
T Consensus 68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-----~~F~afv~aR~l~Gi~kgnl-~v~ 141 (451)
T KOG2615|consen 68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-----RNFAAFVLARFLGGIFKGNL-SVI 141 (451)
T ss_pred hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhccCch-HHH
Confidence 667999999999999999999999999999999999999999999999997 99977777799999998754 677
Q ss_pred HHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhc---CchhHHHHhHHHHHHH----HHHHHHhcCCCCCCCC
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTY---GWGWSFVVPGLIIAFV----GLIVFLFLPVNPESVG 262 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~---gwr~~f~~~~~~~~~~----~~~~~~~~~~~~~~~~ 262 (524)
.++++|.+++|+|+++++.+...+++|.++||.+|+++..+ .=+.+|...+.+..+. .....+++||+-+.+.
T Consensus 142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk 221 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRK 221 (451)
T ss_pred HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchh
Confidence 89999999999999999999999999999999999999862 2223333322222222 2234556777633222
Q ss_pred CCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Q 009816 263 TDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFA-------LCLFFAKLVAYTFLYWLPFYVSH 335 (524)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 335 (524)
+. ++.... .+..++. .+.. +.....-...++|+...... +-.+.+...+....+..+.+...
T Consensus 222 ~~--~~~~~~--~~~~~~~-~~~~------~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~ 290 (451)
T KOG2615|consen 222 RN--DEHSTL--QEAADDR-LALL------KFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHG 290 (451)
T ss_pred hc--ccccch--hhhhhhh-hhhc------chhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcC
Confidence 21 110000 0000000 0000 00011112334555433322 22222222222222333333233
Q ss_pred cccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 009816 336 TAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLD--ARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITG 413 (524)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 413 (524)
. +|+++.+.|.+++..++...+.+....+..+|.. .+..+... +.+....+++.- .............+..
T Consensus 291 r----fg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~-l~~~vP~~llls--~~~~~~~l~~~s~l~s 363 (451)
T KOG2615|consen 291 R----FGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFS-LLLIVPAFLLLS--LARTPVVLYLGSTLKS 363 (451)
T ss_pred c----cCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHH-HHHHHHHHHHHh--ccccchhhhHHHHHHH
Confidence 3 8999999999999988888877777666666654 22232222 223333333221 1233344455566666
Q ss_pred hhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHH
Q 009816 414 MFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMA 483 (524)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~ 483 (524)
+..+...+.....+....| ++++|+++|+....+.++.++||.+.|.+... +-+..+..-+.
T Consensus 364 f~~A~~vt~Lt~Lv~~~~~--------~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~ 427 (451)
T KOG2615|consen 364 FSTASVVTCLTSLVHKYGP--------QSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGA 427 (451)
T ss_pred HHHHHhhHHHHHHHHhcCC--------cccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHH
Confidence 6666666666666666655 47789999999999999999999999988876 44444443333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=236.81 Aligned_cols=304 Identities=16% Similarity=0.201 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHHH
Q 009816 41 IVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFL 120 (524)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~~ 120 (524)
+..++.++...+....++.+++.+.++ |+++. .+.|++.+.+.
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~------------------------------F~lss-------~~~G~i~s~~~ 78 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERR------------------------------FKLST-------SSSGLINGSYE 78 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhh------------------------------hCCCC-------Ccceeeeehhh
Confidence 444556777777788888888988888 88887 89999999999
Q ss_pred HHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccc--------------------------c----------
Q 009816 121 SIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWG--------------------------N---------- 164 (524)
Q Consensus 121 l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~--------------------------~---------- 164 (524)
++++++.++.|+++||+|||+.+.++.+++++++++++++-+. .
T Consensus 79 i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 158 (633)
T TIGR00805 79 IGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQC 158 (633)
T ss_pred HHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccccc
Confidence 9999999999999999999999999999999999999875100 0
Q ss_pred ----------chhHHHHHHHHHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh-c---
Q 009816 165 ----------VHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT-Y--- 230 (524)
Q Consensus 165 ----------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~--- 230 (524)
...+..++++|+++|+|.+..++...+++.|++|+++|+++++++..+..+|.++|+++++++.+ +
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~ 238 (633)
T TIGR00805 159 PSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDT 238 (633)
T ss_pred ccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhccccc
Confidence 01356788999999999999999999999999999999999999999999999999999998873 2
Q ss_pred -------------------CchhHHHHhHHHHHHHHHHHHHhcCCCCCCC-CCCCccccccCCccccCCCcccccccchh
Q 009816 231 -------------------GWGWSFVVPGLIIAFVGLIVFLFLPVNPESV-GTDTNEEDESLSPKKIGEGVTQPLLRRET 290 (524)
Q Consensus 231 -------------------gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (524)
+|+..|++.+++.++.+++ ++++|++.+.. ...+.+.++....+ +... +...+...
T Consensus 239 ~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~-l~~~p~~lp~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~ 314 (633)
T TIGR00805 239 GSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP-FFFFPKALPKEGKRVNVDVHETEKLE-KSED--KSRKKNSD 314 (633)
T ss_pred ccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHhCccccCCcccccchhhhhhhccc-cccc--ccchhhhh
Confidence 1677788888888777654 44555543221 11110000000000 0000 00000001
Q ss_pred hhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHH-HHHhhhHHHHHH
Q 009816 291 KIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDV-GGVLGGILAGHI 369 (524)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l 369 (524)
..++....+++++++|.++...+..++.....+++..++|.|+++. +|+++.+++++.....+ +.+++.+++|++
T Consensus 315 ~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~----~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l 390 (633)
T TIGR00805 315 ITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQ----YGISSAEANFLIGVVNLPAAGLGYLIGGFI 390 (633)
T ss_pred hHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCcHHHHHHHhhhhhhhHHHHHHhhhhhe
Confidence 1122345577899999999999999999999999999999999988 89999999999887766 568899999999
Q ss_pred Hhhhh--hhHHHHHHHHHHHHH
Q 009816 370 SDRLD--ARAITAASFMYCAIP 389 (524)
Q Consensus 370 ~dr~~--~~~~~~~~~~~~~~~ 389 (524)
+||++ .|+.+..+.++..+.
T Consensus 391 ~~r~~~~~~~~~~~~~~~~~~~ 412 (633)
T TIGR00805 391 MKKFKLNVKKAAYFAICLSTLS 412 (633)
T ss_pred eeeecccHHHHHHHHHHHHHHH
Confidence 99987 345555444444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-25 Score=217.85 Aligned_cols=370 Identities=14% Similarity=0.101 Sum_probs=248.6
Q ss_pred HHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHHHHH
Q 009816 43 TFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSI 122 (524)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~~l~ 122 (524)
.++.+...++.....+.+++.+..| +|-+ ....|+.+.+.++
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~~d------------------------------iG~~--------~~~~w~~~~~~l~ 90 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYINAD------------------------------IGGS--------DNWSWFSTAWTLA 90 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHh------------------------------cCCC--------ccchHHHHHHHHH
Confidence 4444445555666666666777777 5533 4578999999999
Q ss_pred HHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhccccccc
Q 009816 123 YAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKR 202 (524)
Q Consensus 123 ~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r 202 (524)
..++.++.|+++|.||||..++.+.++..+|.++++.+ +|...++++..+.|+|.|... .....++|..|.|.|
T Consensus 91 ~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-----~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R 164 (599)
T PF06609_consen 91 SAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-----QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWR 164 (599)
T ss_pred HHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-----CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchh
Confidence 99999999999999999999999999999999999998 999999999999999977665 456668999999999
Q ss_pred cceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhc-CCCCCCCCCCCccccc-cCCcc----
Q 009816 203 GLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFL-PVNPESVGTDTNEEDE-SLSPK---- 275 (524)
Q Consensus 203 ~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~---- 275 (524)
....++.....-+...++|.++..+. +.+|||.|++.+++..+..++.+++. |++.++.+.++...++ .++.+
T Consensus 165 ~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~ 244 (599)
T PF06609_consen 165 GLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGI 244 (599)
T ss_pred hhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHH
Confidence 88877777666566666777777665 56899999998887776655544443 3221111111111111 00000
Q ss_pred ------------------ccCCCcccccc---------------cchhhhh-hhhhhHHHHhcCCC-cHHHHHHHHHHHH
Q 009816 276 ------------------KIGEGVTQPLL---------------RRETKIE-EKAVGFIEAWKIPG-VAPFALCLFFAKL 320 (524)
Q Consensus 276 ------------------~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 320 (524)
....+...... --|.... +++.-..+++|+++ +...++..++...
T Consensus 245 ~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~ 324 (599)
T PF06609_consen 245 FLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGM 324 (599)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHH
Confidence 00001111100 0011111 23344567888754 4444566667777
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCChh---hhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHHHHh
Q 009816 321 VAYTFLYWLPFYVSHTAVDGKYLSSE---MAGNLSTLFDVGGVLGGILAGHISDRLDARAIT-AASFMYCAIPALFFYRS 396 (524)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~~~~~~ 396 (524)
.++....+.|...... ++-++. ..++.....+++..++.++.|.+..++++-|.. +++..++.+..-.+...
T Consensus 325 ~~~s~~~l~p~~~~~v----f~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~ 400 (599)
T PF06609_consen 325 NFFSVNILWPQQVVNV----FGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV 400 (599)
T ss_pred HHHHHHHHHHHHHhhh----ccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc
Confidence 7778888888887776 555543 567788888888889999999999888765554 45555554433333332
Q ss_pred hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhh
Q 009816 397 YGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYI 469 (524)
Q Consensus 397 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 469 (524)
. .++....+...++.|++.+....+.....+-..| .+..|++.|+...++.+|+.+|..+...+
T Consensus 401 ~-~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p--------~~~ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 401 R-PDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVP--------DEDIGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred c-CCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeC--------chHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2 2333344566677777777766555554444444 37789999999999999999997766544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=226.71 Aligned_cols=373 Identities=20% Similarity=0.240 Sum_probs=257.7
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
....+..+++++|..+|++++|+++||+|||+++++++++..++.++.+++ +|++.+++.|++.|++.+......
T Consensus 118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-----~~~~~~~~~Rfl~G~~~~~~~~~~ 192 (521)
T KOG0255|consen 118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-----PNYWMFLIFRFLSGFFGSGPLTVG 192 (521)
T ss_pred hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHhhccchhHHh
Confidence 777888999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEED 269 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (524)
..++.|++++++|+.+..+ ......+..+++++++++.. +||+.+++..+++++..+. +++.||+|++...+++.++
T Consensus 193 ~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~ 269 (521)
T KOG0255|consen 193 FGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRIDE 269 (521)
T ss_pred HhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCchHH
Confidence 9999999999999999999 77777788888887777766 8999999998888876444 6667799998765554433
Q ss_pred ccCCccccC-----CCcccccccc-------hhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009816 270 ESLSPKKIG-----EGVTQPLLRR-------ETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTA 337 (524)
Q Consensus 270 ~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (524)
..+..++.. ........+. .....++...+.++++.|++....+...+.++......+-++.....
T Consensus 270 a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~-- 347 (521)
T KOG0255|consen 270 AIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSG-- 347 (521)
T ss_pred HHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhh--
Confidence 222111110 0000000000 00011122456777888766555555555544443333444444433
Q ss_pred cCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhh
Q 009816 338 VDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVN 417 (524)
Q Consensus 338 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (524)
.|.+... .....+.....+....+...|+.|||.....+..+..++.+...........+...+...+..++.+
T Consensus 348 ---lg~~~~~---~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (521)
T KOG0255|consen 348 ---LGGNIYL---NFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIG 421 (521)
T ss_pred ---cCchHHH---HHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Confidence 3444332 3333444666777777899999999999988888887777776654332221234444455555666
Q ss_pred hhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcccChhHHHHHHHHHHHHHHHHHHHHHH
Q 009816 418 GPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLLTRLVV 497 (524)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
..+........+.+|+ ..|+.+.+..+....++.+++|.+.-..........+.+.+....+...+.. ...
T Consensus 422 ~~~~~~~~~~~el~pt--------~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~l 492 (521)
T KOG0255|consen 422 SAFNLIFLYSAELIPT--------VVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSL-LLL 492 (521)
T ss_pred HHHHHHHHHHHhhccH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH-hcC
Confidence 6677778888888885 5679999999999999999999887544433122222223434444333332 344
Q ss_pred HHhhhhhhcc
Q 009816 498 AEVAAKFVES 507 (524)
Q Consensus 498 ~~~~~~~~~~ 507 (524)
+|++.+...+
T Consensus 493 pet~~~~l~~ 502 (521)
T KOG0255|consen 493 PETKGKPLPG 502 (521)
T ss_pred cccCCCCCch
Confidence 6666655443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=211.76 Aligned_cols=374 Identities=13% Similarity=0.066 Sum_probs=253.0
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhccccc-CCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDR-LDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQM 176 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~ 176 (524)
+|++. .+.|++.+.+.+++.++++++|+++|| +|||++++++.++.+++.++.+++ ++++.+++.|+
T Consensus 43 lg~s~-------~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~ 110 (475)
T TIGR00924 43 LGFSQ-------EQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-----IYPDLIFYGLG 110 (475)
T ss_pred CCCCH-------HHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-----ccHhHHHHHHH
Confidence 66666 899999999999999999999999999 899999999999999999999986 78888999999
Q ss_pred HHHHhhhcchhhHHHHHhhcccccc---ccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHH
Q 009816 177 LAGLFQSTGWPSVVAVVGNWFGKSK---RGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFL 252 (524)
Q Consensus 177 l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~ 252 (524)
+.|++.|...+...++++|++|+++ |+.++++.+.+.++|.++||++++++. ++||++.|.+.++..++ +++.+.
T Consensus 111 l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~-~~l~~~ 189 (475)
T TIGR00924 111 TIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVI-GLLTFF 189 (475)
T ss_pred HHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH-HHHHHH
Confidence 9999999999999999999998754 888999999999999999999999988 47999999997754443 344444
Q ss_pred hcCCCCCCCCCCCccccccCCccccC-C--------------Ccccccccc--------------hhhhhhhhhhHHHHh
Q 009816 253 FLPVNPESVGTDTNEEDESLSPKKIG-E--------------GVTQPLLRR--------------ETKIEEKAVGFIEAW 303 (524)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~--------------~~~~~~~~~~~~~~~ 303 (524)
..++..++.+.++.+.++.+...... . ...+..... .....++.....+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (475)
T TIGR00924 190 AGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARN 269 (475)
T ss_pred HcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHh
Confidence 44432211111000000000000000 0 000000000 000000000000111
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChh----hhhhHHHHHHHHHHhhhHHHHHHHhhhhhh---
Q 009816 304 KIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSE----MAGNLSTLFDVGGVLGGILAGHISDRLDAR--- 376 (524)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~--- 376 (524)
|...+..+.+...+.+..+....+.++.+.++. .+.+.. ..+++.++..+..++..++..++..|..||
T Consensus 270 ~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~----~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~ 345 (475)
T TIGR00924 270 KMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNN----MHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKD 345 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh----ccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 112233444555555666667777788887664 222211 256777788888888777765544444432
Q ss_pred --HH--HHHHHHHHHHHHHHHHHh------hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhH
Q 009816 377 --AI--TAASFMYCAIPALFFYRS------YGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALAT 446 (524)
Q Consensus 377 --~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 446 (524)
.. +.++.++.+++...+... ....+.++.++..++.+++-....+.....+.+..| ++.+|+
T Consensus 346 ~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP--------~~~~g~ 417 (475)
T TIGR00924 346 PTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAP--------QRLMGQ 417 (475)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC--------HHHHHH
Confidence 22 255666655555444321 013467788888889999999999999999998887 477899
Q ss_pred HHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHHH
Q 009816 447 VTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRLV 496 (524)
Q Consensus 447 ~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
.+|+......+|..+++.+.....+. ++...|...++++++..++.....
T Consensus 418 ~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 418 MLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988877666 677777777777766665555433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-31 Score=263.69 Aligned_cols=379 Identities=18% Similarity=0.239 Sum_probs=257.1
Q ss_pred hhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccch---hHHHHHHHHHHHHHhhhcc
Q 009816 109 TALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVH---SFYYYLVVQMLAGLFQSTG 185 (524)
Q Consensus 109 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~r~l~G~~~~~~ 185 (524)
..+.+++.+...+|..+|++++|.++||+|||+.++++.++..++.++.+++ + +++.+.++|++.|++.|..
T Consensus 45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA-----PSYNNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccc
Confidence 4678999999999999999999999999999999999999999999999997 7 9999999999999999999
Q ss_pred hhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh----cCchhHHHHhHHHHHHHHHHHHHhcCCCCCCC
Q 009816 186 WPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT----YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESV 261 (524)
Q Consensus 186 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~----~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (524)
.+....++.|..|+++|++..++.+.+..+|.+++..++..+.. .+||..+.+.+++.++. ++...++||+|++.
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pESP~wL 198 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPESPRWL 198 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccee
Confidence 99999999999999999999999999999999999888765542 35999999988877665 45667899999998
Q ss_pred CCCCccccccCCccccC-CCcc----cccccchhhhhhhhhhHHHHhcCCC----cHHHHHHHHHHHHH-HHHHHHHHHH
Q 009816 262 GTDTNEEDESLSPKKIG-EGVT----QPLLRRETKIEEKAVGFIEAWKIPG----VAPFALCLFFAKLV-AYTFLYWLPF 331 (524)
Q Consensus 262 ~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~ 331 (524)
..++++++..+..++.. .+.. ++..++.++.++....++++++++. .........+..+. ......+.+.
T Consensus 199 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 278 (451)
T PF00083_consen 199 LSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPS 278 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccc
Confidence 66665554433322211 1010 1111111111111134555666543 22222222222112 2233344454
Q ss_pred HHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH--H-hhcchh---HHHH
Q 009816 332 YVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFY--R-SYGHLS---LALN 405 (524)
Q Consensus 332 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~---~~~~ 405 (524)
+.++ .+.+.. -.......+..+++.+++.++.||+|||+.+..+...++++.+.+. . .....+ ....
T Consensus 279 i~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T PF00083_consen 279 IFEN-----AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILS 351 (451)
T ss_pred cccc-----cccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4444 355555 2233344566667777888999999999998888777766655553 1 111111 1222
Q ss_pred HHHHHHHHhhhh-hhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHH
Q 009816 406 IALMFITGMFVN-GPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMA 483 (524)
Q Consensus 406 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~ 483 (524)
++...+..++.+ +..+....+..|.+|+ +.|+++.|+....+.+++.+++.+...+.+. +....+.+.++
T Consensus 352 i~~~~l~~~~~~~g~~~~~~~~~~ElfPt--------~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~ 423 (451)
T PF00083_consen 352 IVFLALFFAFFSLGWGPLPWIYTAELFPT--------KVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAG 423 (451)
T ss_pred ceeeeeccccccccccccccccccccccc--------cccccccccccccccccccccccccccccccccccccchhhHH
Confidence 222222222333 2333444666787774 6678999999999999999999998888776 43455666666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccc
Q 009816 484 AALISGLLLTRLVVAEVAAKFVESRS 509 (524)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (524)
++++..++. ++..+|+++++.+|.+
T Consensus 424 ~~~i~~i~~-~~~lpET~g~~l~ei~ 448 (451)
T PF00083_consen 424 VCLIAIIFV-YFFLPETKGKTLEEIQ 448 (451)
T ss_pred HHHHHHhhe-eEEEeeCCCCCHHHHH
Confidence 555554433 4567888888776654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-24 Score=211.94 Aligned_cols=406 Identities=15% Similarity=0.095 Sum_probs=274.2
Q ss_pred ccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhH
Q 009816 33 KNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALL 112 (524)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (524)
..+||.++.......... ...+.+++..+.+.++ +|++. .++
T Consensus 23 e~~Rw~~lva~~~~~~~~-g~~y~fsv~s~~L~~~------------------------------lgls~-------~~l 64 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICT-SFMYAFNLISGAMQAR------------------------------YNLTQ-------RDL 64 (591)
T ss_pred ccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH------------------------------hCcCH-------HHH
Confidence 356777666555444333 3445677778888888 88887 889
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccc-cchhHHHHHHHHHHHHHhhhcchhhHHH
Q 009816 113 GELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWG-NVHSFYYYLVVQMLAGLFQSTGWPSVVA 191 (524)
Q Consensus 113 g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 191 (524)
+++.++. ..+..++++.|++.||+|||++++++.++++++.++++++... -..+++.+++.|++.|+|.+...+....
T Consensus 65 ~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~ 143 (591)
T PTZ00207 65 STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVV 143 (591)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988773 4556778889999999999999999999999999999985110 0158999999999999999999999999
Q ss_pred HHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCC--CC---Cc
Q 009816 192 VVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVG--TD---TN 266 (524)
Q Consensus 192 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~ 266 (524)
.+.+||| ++||++.|+...+.++|.++.+.+...+...+|+..|++.+++.++..++.+.++++.|.... .+ ++
T Consensus 144 ~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~ 222 (591)
T PTZ00207 144 TVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDE 222 (591)
T ss_pred HHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCH
Confidence 9999996 789999999999999999865444444444579999999999999988888887776543221 11 11
Q ss_pred cccc---------------------------------------------------------c------C-----------
Q 009816 267 EEDE---------------------------------------------------------S------L----------- 272 (524)
Q Consensus 267 ~~~~---------------------------------------------------------~------~----------- 272 (524)
+++. . .
T Consensus 223 ~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~ 302 (591)
T PTZ00207 223 EEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDG 302 (591)
T ss_pred HHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence 1110 0 0
Q ss_pred Cccc-cCCCccccc-------ccchh-------h-h-hhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009816 273 SPKK-IGEGVTQPL-------LRRET-------K-I-EEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSH 335 (524)
Q Consensus 273 ~~~~-~~~~~~~~~-------~~~~~-------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (524)
..++ +.+....+. .+.+. + . .+...++++.++...+|.+.+..++...........+.+..+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~s 382 (591)
T PTZ00207 303 KRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTA 382 (591)
T ss_pred CCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHH
Confidence 0000 000000000 00000 0 0 1111278888899999999999998888777777777777776
Q ss_pred cccCCCCCChhh--hhhHHHHHHHHHHhhhHHHHHHHhhhhhhH---------HHHHHHHHHHHHHHHHHHhhcchhHHH
Q 009816 336 TAVDGKYLSSEM--AGNLSTLFDVGGVLGGILAGHISDRLDARA---------ITAASFMYCAIPALFFYRSYGHLSLAL 404 (524)
Q Consensus 336 ~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (524)
. -|.+... ...+.++.++++.+|++..|.+.....+|+ .+.+..+ +.++.+++....+ ...
T Consensus 383 l----~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p---~~~ 454 (591)
T PTZ00207 383 L----AGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLP---KAA 454 (591)
T ss_pred h----cCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCC---ccH
Confidence 4 2552322 333678889999999999999883332222 2222333 3333333333222 135
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhh-hhhhHhhccc-----------
Q 009816 405 NIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIG-PLLTGYISAT----------- 472 (524)
Q Consensus 405 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~-~~~~g~l~~~----------- 472 (524)
..+..++.|++.+..++.....+.+.++ ++.|+-.-+.....-+|..+- -.+.|.++|.
T Consensus 455 L~~~~~lvg~~~G~~~~~~~~i~selFg---------k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~ 525 (591)
T PTZ00207 455 LPLPYFIAAFANGFMAATIALVTRTIFA---------KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCT 525 (591)
T ss_pred hHHHHHHHHHHhhHhHHHHHHHHHHHhc---------cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeC
Confidence 6778888999999999999999999887 334665555555555555554 4567777765
Q ss_pred C---hhHHHHHHHHHHHHHHHHHHHH
Q 009816 473 S---WTAVFTMLMAAALISGLLLTRL 495 (524)
Q Consensus 473 ~---~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
| ++.+|.+++++++++.+...++
T Consensus 526 G~~C~~~~~~v~~~~~~~g~~~s~~l 551 (591)
T PTZ00207 526 ERVCVVMPLAFLLGLSFLAFITSTYV 551 (591)
T ss_pred CceeeHhHHHHHHHHHHHHHHHHhhe
Confidence 1 6678888888888777765543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-22 Score=198.64 Aligned_cols=376 Identities=14% Similarity=0.076 Sum_probs=225.1
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhccccc-CCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDR-LDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQM 176 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~ 176 (524)
+|+++ ++.+++.+.+........+++|+++|| +|||++++++.++.+++..+++++ .++.+.+.+.|+
T Consensus 52 lg~s~-------~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~----~~~~~~l~~~~~ 120 (500)
T PRK09584 52 LGMSE-------ADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS----GHDAGIVYMGMA 120 (500)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----cccHHHHHHHHH
Confidence 78776 778888888776666777899999999 599999999999999999888885 245667778899
Q ss_pred HHHHhhhcchhhHHHHHhhcccccc--ccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHH---H
Q 009816 177 LAGLFQSTGWPSVVAVVGNWFGKSK--RGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLI---V 250 (524)
Q Consensus 177 l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~---~ 250 (524)
++|++.|...+...+++.|++|+++ |..++++++.+.++|..+||.+++++. ++|||+.|++.++..++..+. .
T Consensus 121 l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~ 200 (500)
T PRK09584 121 TIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFC 200 (500)
T ss_pred HHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998643 456889999999999999999999998 579999999976543333222 2
Q ss_pred HHhcCCCCCCCCCCCccccccCCc---------cccCCCcccccccch---------hhhhhhhhhHHHHhcCCCcHHHH
Q 009816 251 FLFLPVNPESVGTDTNEEDESLSP---------KKIGEGVTQPLLRRE---------TKIEEKAVGFIEAWKIPGVAPFA 312 (524)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 312 (524)
...+++.++....++.+....... ............... ...........+.-++ +.+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 278 (500)
T PRK09584 201 QRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAARR-KMIVA- 278 (500)
T ss_pred HHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH-HHHHH-
Confidence 222333211111000010000000 000000000000000 0000000000011111 12111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc--CC---CCCChhhhhhHHHHHHHHHHhhhHHHHHHHh----hhhhhHHHHHHH
Q 009816 313 LCLFFAKLVAYTFLYWLPFYVSHTAV--DG---KYLSSEMAGNLSTLFDVGGVLGGILAGHISD----RLDARAITAASF 383 (524)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~~~~~~~~~~~ 383 (524)
+..++....++......+.++..... .+ .|+. ...+++.++..+..++..++..++-+ |.+..+.+.++.
T Consensus 279 ~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~ 357 (500)
T PRK09584 279 FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGM 357 (500)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceE-ECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHH
Confidence 22223333444444444444332100 00 1111 12445556666666666666644444 444456677777
Q ss_pred HHHHHHHHHHHHhhc------chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhh
Q 009816 384 MYCAIPALFFYRSYG------HLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSV 457 (524)
Q Consensus 384 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 457 (524)
++.+++.+.+..... ..+.++.+...++.+++-....+.....+.+..| ++.||+++|+......+
T Consensus 358 ~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP--------~~~rg~~~g~~~l~~a~ 429 (500)
T PRK09584 358 VLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVP--------QRLMGFIMGSWFLTTAG 429 (500)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCc--------HHHHHHHHHHHHHHHHH
Confidence 777777666543211 1124567777888899988888888999888887 47789999987766666
Q ss_pred hhhhhhhhhHhhcc----------c-ChhHHHHHHHHHHHHHHHHHHHH
Q 009816 458 GAAIGPLLTGYISA----------T-SWTAVFTMLMAAALISGLLLTRL 495 (524)
Q Consensus 458 g~~i~~~~~g~l~~----------~-~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
|..++..+.+.... . ++...|...+++.++..++....
T Consensus 430 g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~ 478 (500)
T PRK09584 430 AALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLT 478 (500)
T ss_pred HHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666543221 1 36677777777666555444433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-21 Score=186.92 Aligned_cols=343 Identities=20% Similarity=0.239 Sum_probs=249.4
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCC-chhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLD-LRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQM 176 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G-rr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~ 176 (524)
.|++. .|+|.+.+...+...++++++|.++||++ +|+.+.+..++.++........ ++++.+++.-+
T Consensus 32 ~G~s~-------~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~-----~~f~~~~~~~~ 99 (400)
T PF03825_consen 32 RGFSG-------TQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS-----SSFWWLFVIML 99 (400)
T ss_pred CCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHH
Confidence 67776 99999999999999999999999999986 5777777777777766666664 78888888888
Q ss_pred HHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHH-HHHhhh-c---CchhHHHHhHHHHHHHHHHHH
Q 009816 177 LAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLV-ASALLT-Y---GWGWSFVVPGLIIAFVGLIVF 251 (524)
Q Consensus 177 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l-~~~l~~-~---gwr~~f~~~~~~~~~~~~~~~ 251 (524)
+..+......|...++..+... +++.-.|-.....++|.+++... ++.+.. . +..+.+++.+...++.+ ...
T Consensus 100 l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~-~~~ 176 (400)
T PF03825_consen 100 LFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA-GFA 176 (400)
T ss_pred HHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH-HHH
Confidence 8888888888888888888774 55667788888888898887554 233332 2 23345666555544443 334
Q ss_pred HhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 252 LFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPF 331 (524)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (524)
+.+|+.|+++..++..+ +....+..+++|+|++..+.+..++..........+.+.
T Consensus 177 l~lp~~~~~~~~~~~~~------------------------~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~ 232 (400)
T PF03825_consen 177 LFLPKTPPKRSAKESVK------------------------KLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSI 232 (400)
T ss_pred HhCCCCccccccCCCcc------------------------cccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677663221111000 001223457899999999989888888888889999999
Q ss_pred HHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH---
Q 009816 332 YVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIAL--- 408 (524)
Q Consensus 332 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 408 (524)
|+++. -|.+....+.+.++..++.++.-...+++.+|++.++++.++.+..++=..+.... .++.+...+.
T Consensus 233 yl~~~----gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~--~~~~~~~~~~~~l 306 (400)
T PF03825_consen 233 YLQEL----GGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF--SDPWPFIVALQLL 306 (400)
T ss_pred HHHHc----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHHHH
Confidence 99996 23777888888888889999999999999999999999998888877766665543 1222222222
Q ss_pred -HHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhh-hhhhhhhhhhhhHhhccc-Chh------HHHH
Q 009816 409 -MFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGT-GSVGAAIGPLLTGYISAT-SWT------AVFT 479 (524)
Q Consensus 409 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~i~~~~~g~l~~~-~~~------~~~~ 479 (524)
..+.|+.++..+.....++.+..| ++.++++.++++.. ..+|..+|..++|++.|+ +.+ ..+.
T Consensus 307 ~q~lhG~tf~~~~~a~~~yi~~~~p--------~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~ 378 (400)
T PF03825_consen 307 GQLLHGLTFGLFHAASVRYIDRIAP--------PELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFL 378 (400)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHhCC--------ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 345788888888888888888887 47779999998876 479999999999999998 444 3344
Q ss_pred HHHHHHHHHHHHHH
Q 009816 480 MLMAAALISGLLLT 493 (524)
Q Consensus 480 ~~~~~~~~~~~~~~ 493 (524)
+.+++.++..++..
T Consensus 379 v~a~~~~~~~~~f~ 392 (400)
T PF03825_consen 379 VFAVMALVILVLFV 392 (400)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-22 Score=185.26 Aligned_cols=394 Identities=15% Similarity=0.154 Sum_probs=278.0
Q ss_pred cccccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCch
Q 009816 30 LSFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGT 109 (524)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 109 (524)
.+..++||.++++..+..+++.+.+..++......... +| +.
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~------------------------------Yg-s~------- 78 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSF------------------------------YG-SS------- 78 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHH------------------------------hc-ch-------
Confidence 35678999999999999999999999998876655555 55 33
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccc-hhHH--HHHHHHHHHHHhhhcch
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNV-HSFY--YYLVVQMLAGLFQSTGW 186 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~-~~~~--~~~~~r~l~G~~~~~~~ 186 (524)
...-|+.-+|++.+....+++-|+.|++|-|..++++..+..++..+-..+..+.. +.++ ..+.+..+.+.++-...
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim 158 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFIL 158 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhh
Confidence 56678899999999999999999999999999999999999999999888754322 3344 67788888888888777
Q ss_pred hhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh-------cCchh--HHHHhHHHHHHHHHHHHHhcCCC
Q 009816 187 PSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT-------YGWGW--SFVVPGLIIAFVGLIVFLFLPVN 257 (524)
Q Consensus 187 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-------~gwr~--~f~~~~~~~~~~~~~~~~~~~~~ 257 (524)
.....+-.-||+++||..+..+-..+..+|.++|.++...+.. ..|.. .|+..+++..+..++..+..++.
T Consensus 159 ~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~ 238 (480)
T KOG2563|consen 159 GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKK 238 (480)
T ss_pred ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7777888999999999999999999999999999988888763 23554 35545555554445555556665
Q ss_pred CCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009816 258 PESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTA 337 (524)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (524)
|+..+....+... ......+.++.++++++....+++.+....+++..+.+-.-+..
T Consensus 239 P~tPps~s~~~~~---------------------~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-- 295 (480)
T KOG2563|consen 239 PPTPPSASQAALQ---------------------DASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-- 295 (480)
T ss_pred CCCCCchhHhhhh---------------------cCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc--
Confidence 5554432221111 01145678899999999888888777766666666666555555
Q ss_pred cCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHhh
Q 009816 338 VDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAI-TAASFMYCAIPALFFY-RSYGHLSLALNIALMFITGMF 415 (524)
Q Consensus 338 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ 415 (524)
.|++...+|.+.....+++++++++.|.+.||.+.-+. ..+.......+.+.+. ........++......++|++
T Consensus 296 ---sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~ 372 (480)
T KOG2563|consen 296 ---SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFF 372 (480)
T ss_pred ---ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHh
Confidence 37777889999999999999999999999999876554 3333333333322221 111122334445556667777
Q ss_pred hhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-C----hhHHHHHHHHHHHHHHH
Q 009816 416 VNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-S----WTAVFTMLMAAALISGL 490 (524)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~----~~~~~~~~~~~~~~~~~ 490 (524)
..+.+|.-.-...|...| ..-++..|+.+..+++-+++-..+.+...+. + +...-+.+...+.+...
T Consensus 373 ~~~~~Pig~ElgvE~TyP--------v~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~ 444 (480)
T KOG2563|consen 373 GTGYLPIGFELGVETTYP--------VAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAI 444 (480)
T ss_pred hcCCCCcceeeeeeeccc--------cCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHH
Confidence 777666554444443332 2236788999999999888888888887766 3 33333444444444444
Q ss_pred HHHHH
Q 009816 491 LLTRL 495 (524)
Q Consensus 491 ~~~~~ 495 (524)
+..++
T Consensus 445 lva~~ 449 (480)
T KOG2563|consen 445 LVAFF 449 (480)
T ss_pred HHhhh
Confidence 44433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=194.14 Aligned_cols=336 Identities=17% Similarity=0.088 Sum_probs=230.4
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhccccc----CCch-hhHHHHHHHHHHHHHHHhcccc-ccchhHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDR----LDLR-IFLTVGMVGTGLFTSLYGIGYW-GNVHSFYYY 171 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grr-~~l~~~~~~~~~~~~~~~~a~~-~~~~~~~~~ 171 (524)
+|++. .+.|.+.++..+..++..|+.|+++|| +||| +.++.+.+..+++..+....+. .....++.+
T Consensus 40 ~gls~-------~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~ 112 (444)
T PRK09669 40 FGLSA-------AIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA 112 (444)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 88887 999999999999999999999999999 7775 5566677777766655443310 012335667
Q ss_pred HHHHHHHHHhhhcchhhHHHHHhhcc-ccccccceehhhhhhhhhHHHHHHHHHHHhh--------hcCchhHHHHhHHH
Q 009816 172 LVVQMLAGLFQSTGWPSVVAVVGNWF-GKSKRGLIMGIWNAHTSIGNITGSLVASALL--------TYGWGWSFVVPGLI 242 (524)
Q Consensus 172 ~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~--------~~gwr~~f~~~~~~ 242 (524)
++..++.+.+......+..++.+|+. ++++|++..++......+|..+++.+...+. +.+|+..+.+.+++
T Consensus 113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii 192 (444)
T PRK09669 113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLL 192 (444)
T ss_pred HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 77777777777777777788999988 4578998888888888888777766544332 23688888888877
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHH
Q 009816 243 IAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVA 322 (524)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (524)
.++..+..++..+|.++... + + ..+....++..++||.++.+.+..++.....
T Consensus 193 ~~v~~~~~~~~~~e~~~~~~----~-~----------------------~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~ 245 (444)
T PRK09669 193 GVVLFFCCFFMTKERYTPEV----D-N----------------------SSSVWKDLKLLLGNSQWRIMFIFNVVLLTAV 245 (444)
T ss_pred HHHHHHHHhCCeEEecCCCC----c-C----------------------CCCHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 77765555555554321110 0 0 0012344677889999888877766655555
Q ss_pred HHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhH
Q 009816 323 YTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSL 402 (524)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (524)
.......+.|.++. .+ ++...+.+.....+..+++.++.+++.||+++|+.+..+.....+....+.. .+..+.
T Consensus 246 ~~~~~~~~y~~~~~----~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~-~~~~~~ 319 (444)
T PRK09669 246 VTRGGATLYYVNYV----LL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF-IPPSNV 319 (444)
T ss_pred HHHhhhhheeeeee----cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-hCcchH
Confidence 44444444444443 33 2334444555566778888899999999999999887776655543333322 223455
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-Ch
Q 009816 403 ALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SW 474 (524)
Q Consensus 403 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~ 474 (524)
+..++..++.|++.+...+...+.+++..+..+...+ .+..|...|+.+.+..+|.++++.+.|.+.+. ||
T Consensus 320 ~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G-~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 320 WLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSG-RRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5566667778888888888888888777653332222 35568889999999999999999999998876 54
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=197.09 Aligned_cols=340 Identities=11% Similarity=0.037 Sum_probs=232.1
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccc----cCCc-hhhHHHHHHHHHHHHHHHhccc-cccchhHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGD----RLDL-RIFLTVGMVGTGLFTSLYGIGY-WGNVHSFYYY 171 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Gr-r~~l~~~~~~~~~~~~~~~~a~-~~~~~~~~~~ 171 (524)
+|++. .++|.+..+.-+.-++..|+.|+++| |+|| |+.++++.+..+++..++.... ......+..+
T Consensus 37 ~Gls~-------~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~ 109 (473)
T PRK10429 37 VGLSV-------GLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFV 109 (473)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 78777 99999999999999999999999999 6698 5567778777777765554321 0011134566
Q ss_pred HHHHHHHHHhhhcchhhHHHHHhhcc-ccccccceehhhhhhhhhHHHHHHHHHHHhh--------hcCchhHHHHhHHH
Q 009816 172 LVVQMLAGLFQSTGWPSVVAVVGNWF-GKSKRGLIMGIWNAHTSIGNITGSLVASALL--------TYGWGWSFVVPGLI 242 (524)
Q Consensus 172 ~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~--------~~gwr~~f~~~~~~ 242 (524)
++.-++.+++.....++..+++.|.. +++||.+..++-..+.++|..+.+.+...+. ..+|+....+.+++
T Consensus 110 ~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~ 189 (473)
T PRK10429 110 CVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAF 189 (473)
T ss_pred HHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 66777788888888888899999998 5889999998877777777666554443321 12577777777776
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHH
Q 009816 243 IAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVA 322 (524)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (524)
.++..+..++..||.+.....+..+ + ++.+.+..++.+++||.++.+.+..++.....
T Consensus 190 ~~~~~~~~~~~~~e~~~~~~~~~~~-~---------------------~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~ 247 (473)
T PRK10429 190 FIVSTIITLRNVHEVYSSDNQVSAE-G---------------------SHLTLKDIVALIYKNDQLSCLLGMALAYNIAS 247 (473)
T ss_pred HHHHHHHHHcCceecCCcccccccc-c---------------------cCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 6665555555556543211100000 0 00012233455678888887777777776666
Q ss_pred HHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh--hcch
Q 009816 323 YTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRS--YGHL 400 (524)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 400 (524)
.....+.+.|.+.. .+ +....+.+.....++.+++.++.+++.||+|+|+.+..+..+..++.+.+... ....
T Consensus 248 ~~~~~~~~y~~~y~----~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
T PRK10429 248 NIINGFAIYYFTYV----IG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPH 322 (473)
T ss_pred HHHhhheeeEEEEE----CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 66666666555554 33 45566677777778889999999999999999999887776655444433221 1233
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 401 SLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
+.+..++..++.|++.+..+....+.+++..+.. +.....|..|...|....+..++..+++.+.|++.+.
T Consensus 323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~-e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~ 393 (473)
T PRK10429 323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYG-EYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL 393 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666777877777777777777776533 2333346678899999999999999999999998765
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-21 Score=187.16 Aligned_cols=363 Identities=15% Similarity=0.036 Sum_probs=248.6
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccc----cCCchhhHHHH-HHHHHHHHHHHhccccccchhH----
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGD----RLDLRIFLTVG-MVGTGLFTSLYGIGYWGNVHSF---- 168 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Grr~~l~~~-~~~~~~~~~~~~~a~~~~~~~~---- 168 (524)
+|.+. .+.+++..+..+...+.+++.|+++| |+||||.++++ .+...++.++++++ +++
T Consensus 34 lg~~~-------~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~-----~~~~~~~ 101 (477)
T TIGR01301 34 LGIPH-------AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA-----ADIGHLF 101 (477)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC-----chhhhhc
Confidence 67766 99999999999999999999999999 59999987774 66666666776665 332
Q ss_pred -------------HHHHHHHHHHHHhhhcchhhHHHHHhhccccccc--cceehhhhhhhhhHHHHHHHHHHHhh--h-c
Q 009816 169 -------------YYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKR--GLIMGIWNAHTSIGNITGSLVASALL--T-Y 230 (524)
Q Consensus 169 -------------~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~ig~~l~~~l~--~-~ 230 (524)
+.+++.-.+..++.....++..++++|.+|+++| +.+.++.+...++|.++|+.++++.. . +
T Consensus 102 ~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~ 181 (477)
T TIGR01301 102 GDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF 181 (477)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 2233333344557777888899999999998765 57999999999999999999998752 1 1
Q ss_pred -------------CchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhh
Q 009816 231 -------------GWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAV 297 (524)
Q Consensus 231 -------------gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (524)
+.|..|++.+++.++..++..+..+|.|....+...+ ++... ..+. ..++...
T Consensus 182 ~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~-~~~~~---~~~~----------~~~~~~~ 247 (477)
T TIGR01301 182 PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN-SEAAP---PSKH----------GEEAFFG 247 (477)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh-hhccc---cccc----------chhhhHH
Confidence 5688999988888888788888888876432111000 00000 0000 0000111
Q ss_pred h-HHHHhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChh------h----hhhHHHHHHHHHHhhhHH
Q 009816 298 G-FIEAWKI-PGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSE------M----AGNLSTLFDVGGVLGGIL 365 (524)
Q Consensus 298 ~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~----~~~~~~~~~~~~~~~~~~ 365 (524)
. ++...+- |.++.+++..++.+++.+.+..+...|..+.. ++.++. + ..+....+.+...+.+++
T Consensus 248 ~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v---~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~ 324 (477)
T TIGR01301 248 ELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREV---YGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIG 324 (477)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH---cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2222222 45678889999999999999888888876432 332221 1 123444556666677788
Q ss_pred HHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHhhcc-h----------------h-HHHHHHHHHHHHhhhhhhhHHHHHH
Q 009816 366 AGHISDRLDA-RAITAASFMYCAIPALFFYRSYGH-L----------------S-LALNIALMFITGMFVNGPYALITTA 426 (524)
Q Consensus 366 ~g~l~dr~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~----------------~-~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (524)
..++.+|+|+ |+....+.++.+++.....+.... . . .+..++...+.|+..+..+..-++.
T Consensus 325 l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal 404 (477)
T TIGR01301 325 MEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFAL 404 (477)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHH
Confidence 8899999985 566567766666655555432210 0 0 3556677788899999999999999
Q ss_pred HHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc---ChhHHHHHHHHHHHHHHHHHHHH
Q 009816 427 VSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT---SWTAVFTMLMAAALISGLLLTRL 495 (524)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
+++..+++ .+..|..+|+.|.+-.+...+.....|.+.+. +...++.+.++..++++++....
T Consensus 405 ~s~~~~~~------~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~ 470 (477)
T TIGR01301 405 ASIRSSNL------GAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALIL 470 (477)
T ss_pred HHHHcccc------CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHh
Confidence 99888742 25569999999999999999999888875544 45556666666666666665543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-23 Score=178.41 Aligned_cols=362 Identities=15% Similarity=0.100 Sum_probs=246.3
Q ss_pred cchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHh
Q 009816 34 NHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLG 113 (524)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 113 (524)
.+|...+...|+.-+..++..-..+.+......| .+++. ++..
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d------------------------------~ni~~-------akft 82 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLD------------------------------SNIEY-------AKFT 82 (459)
T ss_pred hhHHHHHHHHHHhcccceeecCCchhhhhhhhcc------------------------------cccce-------eeee
Confidence 4555555566665566666666665555444444 44444 7888
Q ss_pred HHHHHHHHHHHhhhhhhhccccc-CCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHH
Q 009816 114 ELDLAFLSIYAGGMFFSGHLGDR-LDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAV 192 (524)
Q Consensus 114 ~~~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 192 (524)
++.+.|.....+.++++|++.|| +|-|...++-++...++.++++...+ .+.+|.+...|++.|+|.-...++-.++
T Consensus 83 LlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi--~~aFw~M~~GRF~FGIGgESlAVaQN~y 160 (459)
T KOG4686|consen 83 LLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI--SHAFWTMLAGRFLFGIGGESLAVAQNKY 160 (459)
T ss_pred eeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH--HHHHHHHHhhheeeccCchhhhhhhcce
Confidence 99999999999999999999996 68887766666666777777765322 3899999999999999988888999999
Q ss_pred HhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh-----cC--chh---HHHHhHHHHHHHHHHHHHhc--CCCCCC
Q 009816 193 VGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT-----YG--WGW---SFVVPGLIIAFVGLIVFLFL--PVNPES 260 (524)
Q Consensus 193 i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-----~g--wr~---~f~~~~~~~~~~~~~~~~~~--~~~~~~ 260 (524)
...||..||.+.++|+.....-+|..+--.+.+++.+ ++ =+. .....+.......+.....+ .|...+
T Consensus 161 av~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAe 240 (459)
T KOG4686|consen 161 AVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAE 240 (459)
T ss_pred eEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 9999999999999999999999998876666666552 11 000 11111111111111111111 111110
Q ss_pred CCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 009816 261 VGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDG 340 (524)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (524)
... + .++...-+.+ +..+ .--..|.+|.+.+..++.+.+.+.+...-|.++++.
T Consensus 241 ril-h---------~e~g~~Ge~p----------kLtd--v~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~r---- 294 (459)
T KOG4686|consen 241 RIL-H---------LEEGFLGEEP----------KLTD--VNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKR---- 294 (459)
T ss_pred HHH-h---------hhcCcccCCc----------cccc--ccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHh----
Confidence 000 0 0000000000 0000 001247889999999999999999999999999998
Q ss_pred CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhh
Q 009816 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPY 420 (524)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (524)
+|+|+..++.+.+.....+.+.+++.|.++||+|++.+.+.+..+..+..-....+ +.+..++...+.|+.+....
T Consensus 295 fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F----t~lsPy~~m~~lGLsysllA 370 (459)
T KOG4686|consen 295 FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF----TFLSPYTSMTFLGLSYSLLA 370 (459)
T ss_pred hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh----hhccHHHHHHHHhhhHHHHH
Confidence 99999999999998888888999999999999999987766655554443332221 12223444555666655544
Q ss_pred HHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 421 ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
-.....++..+|+ ++.|++.|..+.+.++|-++.|.++|.+.|.
T Consensus 371 cslWP~va~~vpE--------~qLGTaygf~qsIqNLgla~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 371 CSLWPCVASLVPE--------EQLGTAYGFIQSIQNLGLAFIPIIAGFIADG 414 (459)
T ss_pred HHHhhhhhhhCCH--------HHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence 4445555555653 6679999999999999999999999999998
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-21 Score=181.37 Aligned_cols=277 Identities=15% Similarity=0.138 Sum_probs=206.4
Q ss_pred chhHHHHHHHHHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh---------------
Q 009816 165 VHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT--------------- 229 (524)
Q Consensus 165 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~--------------- 229 (524)
..+|+.+++.-++.|.|.+...+..+.++++..++|++++.+++.+..+++|..++|.+++.+..
T Consensus 7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~ 86 (310)
T TIGR01272 7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANA 86 (310)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhH
Confidence 37899999999999999999999999999999999999999999999999999999999997762
Q ss_pred --cCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCC
Q 009816 230 --YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPG 307 (524)
Q Consensus 230 --~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (524)
.+|+++|++.+.+..+..++. .+.+ .|+.++++ +++. .. ++ ....++.+++|.
T Consensus 87 ~~~~~~~~yl~ia~~~~~~~i~~-~~~~-~p~~~~~~--~~~~-~~--~~------------------~~~~~~~~~~~~ 141 (310)
T TIGR01272 87 EAAKVHTPYLLLAGALAVLAIIF-AFLP-LPELQEAD--VARV-SS--GD------------------TTQKTSAFQFTH 141 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHcc-CCCCCccc--cccc-cc--cc------------------ccchhhHHhhHH
Confidence 369999997777665554433 2332 12111100 0000 00 00 000123567788
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 009816 308 VAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCA 387 (524)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 387 (524)
++...+..++......+...|++.|+.+.. .+|+++.+.+...+.+..+.++|+++.+++.||+++|+.+..+..+..
T Consensus 142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~--~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~ 219 (310)
T TIGR01272 142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPH--ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAV 219 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 887777778877788899999999997530 158999999999999999999999999999999999998877766666
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhH
Q 009816 388 IPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTG 467 (524)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g 467 (524)
+..++.... .+ .......++.|++.+..+|...+...+.+++ ..+++.++. ....+|+++.|++.|
T Consensus 220 ~~~~l~~~~---~~-~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~---------~~~~asai~-~~~~~Gg~i~P~l~G 285 (310)
T TIGR01272 220 LLSIGAALT---HG-YVAMWFVLALGLFNSIMFPTIFSLALNALGR---------HTSQGSGIL-CLAIVGGAIVPLLQG 285 (310)
T ss_pred HHHHHHHHc---CC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------hhhhhHHHH-HHHHhcchHHHHHHH
Confidence 554333321 12 2223455678899999999988888887763 235666664 567899999999999
Q ss_pred hhccc-ChhHHHHHHH
Q 009816 468 YISAT-SWTAVFTMLM 482 (524)
Q Consensus 468 ~l~~~-~~~~~~~~~~ 482 (524)
.+.|. +.+.++++..
T Consensus 286 ~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 286 SLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHhccchHHHHHHH
Confidence 99997 8777776443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-20 Score=181.76 Aligned_cols=351 Identities=19% Similarity=0.175 Sum_probs=269.2
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHH-HHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhh
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTV-GMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPS 188 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 188 (524)
+..++..++..+..++..|+.|.++|+-|+||.++. ..++..+.+.++.+. ...+++...+.-++.-++.+...+.
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v---~~~~~~~~~~l~iia~v~~~~~~vf 146 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV---SPGQWWLALVLFIIANVGYEASNVF 146 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh---CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999997776544 445555555555553 1245555556666666777888899
Q ss_pred HHHHHhhccccccc--------------------------cceehhhhhhhhhHHHHHHHHHHHhh-h--------cCch
Q 009816 189 VVAVVGNWFGKSKR--------------------------GLIMGIWNAHTSIGNITGSLVASALL-T--------YGWG 233 (524)
Q Consensus 189 ~~~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~ig~~l~~~l~-~--------~gwr 233 (524)
..+++.|..+++++ ++..+.-.....+|.++.-++.-.+. . .+-|
T Consensus 147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r 226 (477)
T PF11700_consen 147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR 226 (477)
T ss_pred HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence 99999999999888 89999888888888888877665553 1 1258
Q ss_pred hHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHH
Q 009816 234 WSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFAL 313 (524)
Q Consensus 234 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (524)
..+.+.++.-++..+..++++|+.|+.+..++... .-....++-...++++.+.|....+++
T Consensus 227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~------------------~~~~g~~~l~~t~k~~~~~~~~~~fLi 288 (477)
T PF11700_consen 227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSS------------------YLRFGFKRLWRTFKEIRKLRQLFLFLI 288 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchh------------------HHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 88999888888888999999998776321111000 000111223445667778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhh--HHHHHHHHHHHHHHH
Q 009816 314 CLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDAR--AITAASFMYCAIPAL 391 (524)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~--~~~~~~~~~~~~~~~ 391 (524)
+.++..-+...+......|.++. +|++..+...+..+..+.+++|+++.|++.||+|.| +.+..+..+..+..+
T Consensus 289 a~~l~~dg~~ti~~~~~i~a~~~----lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~ 364 (477)
T PF11700_consen 289 AYFLYSDGVNTIISFAGIYATEV----LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL 364 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 99998888889999999999988 899999999999999999999999999999999998 666665555433332
Q ss_pred HHHH-----hhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhh
Q 009816 392 FFYR-----SYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLT 466 (524)
Q Consensus 392 ~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~ 466 (524)
.... .....+.+.+++..++.|++.++.++..-+...+..|+ ++.+..+|++.......+.+||.+.
T Consensus 365 ~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~--------g~e~efFgly~i~gk~ss~lGPll~ 436 (477)
T PF11700_consen 365 YGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP--------GREAEFFGLYAITGKASSWLGPLLF 436 (477)
T ss_pred HHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC--------chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 11134566778888899999999999999999999985 5559999999999999999999999
Q ss_pred Hhhccc--ChhHHHHHHHHHHHHHHHHHH
Q 009816 467 GYISAT--SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 467 g~l~~~--~~~~~~~~~~~~~~~~~~~~~ 493 (524)
|.+.+. +.+..+....++.+++.++..
T Consensus 437 g~i~~~tg~~r~g~~~l~~lf~~gl~ll~ 465 (477)
T PF11700_consen 437 GLITDATGSQRYGFLFLLVLFLIGLILLF 465 (477)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence 999988 588888888777777766654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=189.72 Aligned_cols=334 Identities=13% Similarity=0.073 Sum_probs=218.2
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccC----CchhhH-HHHHHHHHHHHHHH-hcc-ccccchhHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRL----DLRIFL-TVGMVGTGLFTSLY-GIG-YWGNVHSFYY 170 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~----Grr~~l-~~~~~~~~~~~~~~-~~a-~~~~~~~~~~ 170 (524)
+|++. .++|.+.+...+..++..++.|+++||. ||||.. +.+.+...+...+. ... ..........
T Consensus 39 ~gl~~-------~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (448)
T PRK09848 39 AGVGA-------AAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY 111 (448)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence 67776 9999999999999999999999999996 777644 55555444444433 211 0001123344
Q ss_pred HHHHHHHHHHhhhcchhhHHHHHhhccc-cccccceehhhhhhhh-----hHHHHHHHHHHHhhh---cCchhHHHHhHH
Q 009816 171 YLVVQMLAGLFQSTGWPSVVAVVGNWFG-KSKRGLIMGIWNAHTS-----IGNITGSLVASALLT---YGWGWSFVVPGL 241 (524)
Q Consensus 171 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~-----~G~~ig~~l~~~l~~---~gwr~~f~~~~~ 241 (524)
+++.-++.+++.+...++..++..+..+ +++|.+..++-..+.+ ++..++|.+++.... .+|.....+.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v 191 (448)
T PRK09848 112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAI 191 (448)
T ss_pred HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 5556667788888888777777777664 4678877666554333 455556666554321 112211122233
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHH
Q 009816 242 IIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLV 321 (524)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (524)
++++..++.....||+++.+.+ .......++.+++||.++...+..++....
T Consensus 192 ~~~~~~~~~~~~~~e~~~~~~~----------------------------~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~ 243 (448)
T PRK09848 192 AGMVLYFICFKSTRENVVRIVA----------------------------QPSLKISLQTLKRNRPLFMLCIGALCVLIS 243 (448)
T ss_pred HHHHHHHHHHcCcEeccCCCcc----------------------------CCCHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 3333333333333443211100 000223466789999998888888888777
Q ss_pred HHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchh
Q 009816 322 AYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLS 401 (524)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (524)
........|.|+++. +|.++...++......++.+++.++.+++.||+++|+.+.++..+..++.+.+.. .+..+
T Consensus 244 ~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~-~~~~~ 318 (448)
T PRK09848 244 TFAVSASSLFYVRYV----LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW-VSVWS 318 (448)
T ss_pred HHHHhhhheeeEeee----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-cCchh
Confidence 777777888888887 7877766555555556777888999999999999999998888777666555443 22334
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 402 LALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 402 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
.+...+..++.|++.+...+...+...+..+.++ .....+..|...|+.+....+|..+++.+.+.+.+.
T Consensus 319 ~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~-~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 319 LPVALVALAIASIGQGVTMTVMWALEADTVEYGE-YLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555667788878877777777776665432 222235679999999999999999999999887654
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=196.43 Aligned_cols=384 Identities=13% Similarity=0.060 Sum_probs=251.6
Q ss_pred hhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHH
Q 009816 36 QAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGEL 115 (524)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~ 115 (524)
+...+.++...++...........+.+.+.++ +|++. ++++..
T Consensus 24 ~~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~------------------------------lg~s~-------~~i~~~ 66 (468)
T TIGR00788 24 PRVVLAIGLQVLFVKGIAGLMRLPLSPMLTDD------------------------------LGLDG-------ARYQRL 66 (468)
T ss_pred cchHHHHHHHHHHHhhHHHHhhhhhhHHHHHh------------------------------cCCCH-------HHHHHH
Confidence 33444555556666666533333455556666 88888 999999
Q ss_pred HHHHHHHHHhhhhhhhcccccCC-----chhhHHHHHHHHH-HHHHHHhccccccchh-HHHHHHHHHHHHHhhhcchhh
Q 009816 116 DLAFLSIYAGGMFFSGHLGDRLD-----LRIFLTVGMVGTG-LFTSLYGIGYWGNVHS-FYYYLVVQMLAGLFQSTGWPS 188 (524)
Q Consensus 116 ~s~~~l~~~~~~~~~G~l~Dr~G-----rr~~l~~~~~~~~-~~~~~~~~a~~~~~~~-~~~~~~~r~l~G~~~~~~~~~ 188 (524)
.+...+...+-.+ +|+++||++ ||+.++++.++.+ ++....+.. ++ .....+..++.+++.+...++
T Consensus 67 ~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~-----~~~~~~~~~~~~l~~~~~a~~dv~ 140 (468)
T TIGR00788 67 VGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGK-----VSSAKVAAAFIFLAALAKALYDVL 140 (468)
T ss_pred HHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999666 999999998 7778888877763 433333332 34 334445888999999999999
Q ss_pred HHHHHhhcccccccccee---hhhhhhhhhHHHHHHHHHHHhhh-cCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCC
Q 009816 189 VVAVVGNWFGKSKRGLIM---GIWNAHTSIGNITGSLVASALLT-YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTD 264 (524)
Q Consensus 189 ~~~~i~~~~~~~~r~~~~---~~~~~~~~~G~~ig~~l~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (524)
..+++.|..+ +++.... +.......+|.++|+.+++.+.+ ++||..|++.+++.++. .+..++++|++.....+
T Consensus 141 ~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~ 218 (468)
T TIGR00788 141 VDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPR 218 (468)
T ss_pred HHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccccccccc
Confidence 9999999998 5554433 34444455899999999999884 69999999988887776 55566677753111110
Q ss_pred CccccccCCccccCCCccccccc-chhhhhhhhhhHHHHhcCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccCCCC
Q 009816 265 TNEEDESLSPKKIGEGVTQPLLR-RETKIEEKAVGFIEAWKIPGVAPFALCLFFA-KLVAYTFLYWLPFYVSHTAVDGKY 342 (524)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g 342 (524)
..++.. .. . ..... .....++.....++.+++|.++...+..++. .........+. .+..+. .|
T Consensus 219 ~~~~~~------~~--~-~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f-~~~~~~----lG 284 (468)
T TIGR00788 219 IGTYLE------MN--M-ALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVF-CATTQC----LP 284 (468)
T ss_pred ccccch------hh--h-hhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeE-EEEccc----CC
Confidence 000000 00 0 00000 0000111223455567788877765555542 11111110000 011122 79
Q ss_pred CChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-------cchhHHHHHHHHHHHHhh
Q 009816 343 LSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSY-------GHLSLALNIALMFITGMF 415 (524)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~ 415 (524)
+++.+.|......+++.+++..+.+++.+|++.|+.+.++.++..++.+...... ...+.+.......+.+++
T Consensus 285 ~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~ 364 (468)
T TIGR00788 285 GGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVL 364 (468)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHH
Confidence 9999999999999999999999999999999999998888877776654432110 002222334445566777
Q ss_pred hhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-C-----hhHHHHHHHHHHH
Q 009816 416 VNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-S-----WTAVFTMLMAAAL 486 (524)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-----~~~~~~~~~~~~~ 486 (524)
.+..+.+....+.+..|+ +..|+..++.+.+.++|..+++.++|.+.+. | ++..+....+...
T Consensus 365 ~g~~~~~~~~~~~~~~p~--------~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~ 433 (468)
T TIGR00788 365 AQLKFMPFLVLLARLCPS--------GCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSL 433 (468)
T ss_pred HHHHHccHHHHHHHhCCC--------CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHH
Confidence 777777778888888774 6669999999999999999999999988876 4 6666655444433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=183.66 Aligned_cols=360 Identities=15% Similarity=0.080 Sum_probs=241.4
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHH---HHHHHHhccccccchhHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTG---LFTSLYGIGYWGNVHSFYYYLVV 174 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~ 174 (524)
.|++. +++|.+.++..+...+.+|+.|.++||+|.||-++..+.+.. ...+...+.+....+-+...++.
T Consensus 38 ~GLs~-------~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig 110 (412)
T PF01306_consen 38 AGLSG-------TEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIG 110 (412)
T ss_dssp H---H-------HHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHT
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666 999999999999999999999999999997765544332221 12222222100001111222233
Q ss_pred HHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHHHhc
Q 009816 175 QMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFL 254 (524)
Q Consensus 175 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~ 254 (524)
-+..|+......|+..+++.++. ++.+.=.|-.....++|.+++..++|.+...+-+..||+....+++..++.++..
T Consensus 111 ~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~ 188 (412)
T PF01306_consen 111 GIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLK 188 (412)
T ss_dssp TTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred HHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcC
Confidence 33344444455566666666654 3556677888899999999999999999877778889987666665544444444
Q ss_pred CCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009816 255 PVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVS 334 (524)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (524)
|+.+++....+.++.+ +.+...+...+++|+|++|.+.+........+..+-...+.|..
T Consensus 189 ~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~ 248 (412)
T PF01306_consen 189 PDVPPQAEVADALGAK--------------------KDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFA 248 (412)
T ss_dssp --SSSSS-SSTTSSS--------------------------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCchhhhhhcccccC--------------------CCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333322111100000 00012344678899999999888877777777777666777777
Q ss_pred hcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Q 009816 335 HTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGM 414 (524)
Q Consensus 335 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 414 (524)
....+ .+.+....|.+.+..-+..++.-.+.+++.+|+|.|+.++++..++.+=...... .++.+.....-.+.++
T Consensus 249 ~~f~~-~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~---~~~~~~i~~~klLH~~ 324 (412)
T PF01306_consen 249 SFFQS-AGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF---ATNPWVISLIKLLHAL 324 (412)
T ss_dssp HTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-----SHHHHHHHHHHHHH
T ss_pred HHhcc-cccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh---hcchHHHHHHHHHHHH
Confidence 64111 1345566788888888889999999999999999999999888887776655543 3566777778888888
Q ss_pred hhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHH-HhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHH
Q 009816 415 FVNGPYALITTAVSADLGTHSSLKGNSRALATVTAII-DGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~ 492 (524)
-.........-++.+.+++ |..++...+. +...++|.++.+.++|.+.|+ |++.+|++++.+.+...++.
T Consensus 325 e~~l~lva~fkYI~~~fd~--------rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~ 396 (412)
T PF01306_consen 325 EFPLLLVAAFKYITAHFDK--------RLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLIS 396 (412)
T ss_dssp HHHHHHHHHHHHHHHHS-G--------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCH--------hHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888873 6678888875 567799999999999999999 99999999988877666666
Q ss_pred HHHHHH
Q 009816 493 TRLVVA 498 (524)
Q Consensus 493 ~~~~~~ 498 (524)
.+..++
T Consensus 397 ~f~l~~ 402 (412)
T PF01306_consen 397 AFTLKK 402 (412)
T ss_dssp HHHS--
T ss_pred eeeecC
Confidence 654433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=185.36 Aligned_cols=336 Identities=17% Similarity=0.159 Sum_probs=259.0
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccc----cCCchhh-HHHHHHHHHHHHHHHhcc-c--cccchhHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGD----RLDLRIF-LTVGMVGTGLFTSLYGIG-Y--WGNVHSFY 169 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Grr~~-l~~~~~~~~~~~~~~~~a-~--~~~~~~~~ 169 (524)
+|+++ ...|.+..+..+--++..|+.|.++| |+||||. ++++.+..+++..++... + ........
T Consensus 32 ~gl~~-------~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~ 104 (428)
T PF13347_consen 32 LGLSP-------ALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLV 104 (428)
T ss_pred cCCCH-------HHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHH
Confidence 78877 99999999999999999999999999 8997765 667878888877777653 1 01112344
Q ss_pred HHHHHHHHHHHhhhcchhhHHHHHhhccc-cccccceehhhhhhhhhHHHHHHHHHHHhhh--------cCchhHHHHhH
Q 009816 170 YYLVVQMLAGLFQSTGWPSVVAVVGNWFG-KSKRGLIMGIWNAHTSIGNITGSLVASALLT--------YGWGWSFVVPG 240 (524)
Q Consensus 170 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~--------~gwr~~f~~~~ 240 (524)
.+.+.-++..++......+..++.+|..+ +++|.+..+.-..+..+|..+...+...+.. .+|++..++.+
T Consensus 105 ~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~ 184 (428)
T PF13347_consen 105 WLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLA 184 (428)
T ss_pred HHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHH
Confidence 56777777899999999999999999997 5789999999999888888766665555441 16999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHH
Q 009816 241 LIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKL 320 (524)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (524)
++.++..++..+..+|.++....++ ++.+....++.+++||.++.+.+..++...
T Consensus 185 iv~~v~~~i~~~~~ke~~~~~~~~~-------------------------~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~ 239 (428)
T PF13347_consen 185 IVGLVFFLITFFFVKERSVEVTEQE-------------------------KKISLRDSLRSLFRNRPFRILLLAFFLQWL 239 (428)
T ss_pred HHHHHHhhhhhheeeeccccccccc-------------------------cccccccchhhhcccchHHHHHHHHHHHHh
Confidence 9888887777787777211111000 001123345778899999988888888888
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcch
Q 009816 321 VAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHL 400 (524)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (524)
.........+.|.++. .|.+ ...+.+.....++.+++.++.++++||+|+|+.+..+..+.+++.+.+.+.. ..
T Consensus 240 ~~~~~~~~~~y~~~~v----l~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-~~ 313 (428)
T PF13347_consen 240 AFALMNTFLPYYFTYV----LGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG-PG 313 (428)
T ss_pred hhhhhhhHHHHHHHHH----hcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH-hh
Confidence 8887788888888887 5665 5667777788899999999999999999999999988888888777665542 25
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 401 SLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
+.+..++...+.|++.+..+....+..++..+..+. ...++..|...|+.+....++..+++.+.+.+.+.
T Consensus 314 ~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~-~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 314 SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEW-KTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred hHHHHHHHHHHhHhhhcccccccccccccchhhHHH-hcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 677788888899999998888888888877764433 33346679999999999999999999999988765
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-19 Score=173.44 Aligned_cols=366 Identities=13% Similarity=0.083 Sum_probs=221.9
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccC-CchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRL-DLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQM 176 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~ 176 (524)
+|+++ .+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++++.. ..+...+.+...
T Consensus 40 lgls~-------~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----~~~~~~~~l~l~ 108 (493)
T PRK15462 40 LKYDD-------NHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----EIHPSFLYLSLA 108 (493)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----hcchhHHHHHHH
Confidence 67776 8899999999999999999999999999 99999999999999998777653 112233444444
Q ss_pred HHHHhhhcchhhHHHHHhhccccc--cccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHh
Q 009816 177 LAGLFQSTGWPSVVAVVGNWFGKS--KRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLF 253 (524)
Q Consensus 177 l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~ 253 (524)
+.++|.|...+...++++|.+|++ +|..++++.+.+.++|..++|.+.+++. ++||++.|.+.++ +.+.+++.+..
T Consensus 109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai-gm~l~li~~~~ 187 (493)
T PRK15462 109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV-GMIAGLVIFLC 187 (493)
T ss_pred HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHHH
Confidence 555666777787889999999875 6999999999999999999999999998 5799999998655 44444544444
Q ss_pred cCCCCCCC-CCCCccccccCCccccCCCcc---------cccccch---hhhhhhh---------hhH----HHHh---c
Q 009816 254 LPVNPESV-GTDTNEEDESLSPKKIGEGVT---------QPLLRRE---TKIEEKA---------VGF----IEAW---K 304 (524)
Q Consensus 254 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~~---------~~~----~~~~---~ 304 (524)
.++...+. ..+++..++ ++...... ....... .+..... .-+ .... .
T Consensus 188 ~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 263 (493)
T PRK15462 188 GNRHFTHTRGVNKKVLRA----TNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQ 263 (493)
T ss_pred hhhhhccCCCCCCCCchh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 33221111 000000000 00000000 0000000 0000000 000 0000 0
Q ss_pred CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhh-H--
Q 009816 305 IPGV---APFALCLFFAKLVAYTFLYWLPFYVSHTAVDG-KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDAR-A-- 377 (524)
Q Consensus 305 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~-~-- 377 (524)
++++ ..+.+...+.+..+....+.+..|..+..... +|++ -.+++..++..+..++.+++..++-.|..+| +
T Consensus 264 r~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~ 342 (493)
T PRK15462 264 RKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTV 342 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 1122 22223333344444455566666665531111 2322 2345666777787778888777776665322 1
Q ss_pred ----HHHHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHH
Q 009816 378 ----ITAASFMYCAIPALFFYRSY------GHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATV 447 (524)
Q Consensus 378 ----~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 447 (524)
-..++.++++++.+++.... ...+.++.+...++..++--...|...+.+.+..| ++.+|+.
T Consensus 343 s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP--------~~~~g~~ 414 (493)
T PRK15462 343 RIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEI--------PGVTGVL 414 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhCh--------HHHHHHH
Confidence 24566666666665553211 11356667777777888877788888888888877 4788999
Q ss_pred HHHHHhhh-hhhhhhhhhhhHhhccc-------------ChhHHHHHHHHHHHHH
Q 009816 448 TAIIDGTG-SVGAAIGPLLTGYISAT-------------SWTAVFTMLMAAALIS 488 (524)
Q Consensus 448 ~g~~~~~~-~~g~~i~~~~~g~l~~~-------------~~~~~~~~~~~~~~~~ 488 (524)
+|+..... .+|..++..+.+..... .|...|...+...+++
T Consensus 415 mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 415 TGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 99886533 56666666665554310 3556677777666555
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-18 Score=165.40 Aligned_cols=339 Identities=17% Similarity=0.110 Sum_probs=260.6
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhccccc----CCchh-hHHHHHHHHHHHHHHHhcccc-ccchhHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDR----LDLRI-FLTVGMVGTGLFTSLYGIGYW-GNVHSFYYY 171 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grr~-~l~~~~~~~~~~~~~~~~a~~-~~~~~~~~~ 171 (524)
+|++. ...|.+..+--+--++.-|+.|.+.|| +||+| .++.+.+..++.+.++-.+.. ....+....
T Consensus 43 ~Gis~-------~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya 115 (467)
T COG2211 43 FGLSA-------ALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYA 115 (467)
T ss_pred cCCcH-------HHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHH
Confidence 88887 888888888888888999999999995 78755 577777888888888777621 112456677
Q ss_pred HHHHHHHHHhhhcchhhHHHHHhhccc-cccccceehhhhhhhhhHHHHHHHHHHHhhh--------cCchhHHHHhHHH
Q 009816 172 LVVQMLAGLFQSTGWPSVVAVVGNWFG-KSKRGLIMGIWNAHTSIGNITGSLVASALLT--------YGWGWSFVVPGLI 242 (524)
Q Consensus 172 ~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~--------~gwr~~f~~~~~~ 242 (524)
++.-.+.+++......+-.++.++..+ ++||.+..++-+.+..+|..+...+...+.. .||+..-.+.+++
T Consensus 116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi 195 (467)
T COG2211 116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVI 195 (467)
T ss_pred HHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHH
Confidence 788889999999998888899999885 5889999999999999987665544433331 4788888888888
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHH
Q 009816 243 IAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVA 322 (524)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (524)
+.+..+.+++-.+|.+.+....+.. .+.+....+...++|+.++..++...+.....
T Consensus 196 ~~i~~l~~~~~v~ER~~~~~~~~~~-----------------------~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~ 252 (467)
T COG2211 196 GVILLLFCFFNVKERVVETQPTKTG-----------------------VKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAF 252 (467)
T ss_pred HHHHHHHHHHHhhcccCccccCccc-----------------------ccccHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 8888777777777765422111100 00112334556889999988888777777777
Q ss_pred HHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhH
Q 009816 323 YTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSL 402 (524)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (524)
.........|.+.. .|.+.............+.+++.++..++.+|+|+|++...+.++.+++.+.+.+.. .++.
T Consensus 253 ~i~~s~~~yy~~y~----lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~-~~~~ 327 (467)
T COG2211 253 NIRGSIMVYYVTYV----LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP-AGSV 327 (467)
T ss_pred HHHhhhhheeEEEE----cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-Ccch
Confidence 77777788888887 788888888888888888888899999999999999999999888888887776643 4556
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 403 ALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 403 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
+..++..++.+++.+...+...+.+++.. +..+.....|..|...|...++.-+|.+++..+.|++.+.
T Consensus 328 ~l~~~~~~i~~~g~~~~~~l~wam~~d~v-Dyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 328 VLIVVALIIAGVGTGIANPLPWAMVADTV-DYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred HHHHHHHHHHHHHhhccccccHHHhcchh-hHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777788888887777776666655 4555555668889999999999999999999999998765
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-18 Score=169.11 Aligned_cols=333 Identities=15% Similarity=0.077 Sum_probs=217.7
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhccccc----CCchhh-HHHHHHHHHHHHHHHhcccc-ccchhHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDR----LDLRIF-LTVGMVGTGLFTSLYGIGYW-GNVHSFYYY 171 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grr~~-l~~~~~~~~~~~~~~~~a~~-~~~~~~~~~ 171 (524)
+|++. ...|.+..+.-+--++..|+.|.++|| +||||. ++++.+..+++..++-..+. .....+..+
T Consensus 40 ~Gl~~-------~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~ 112 (460)
T PRK11462 40 FGIPA-------GFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYA 112 (460)
T ss_pred hCCCH-------HHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 78887 889999999999999999999999996 788655 56676777777665543310 011124556
Q ss_pred HHHHHHHHHhhhcchhhHHHHHhhccc-cccccceehhhhhhhhhHHHHHHHHHHHhh-h-------cCchhHHHHhHHH
Q 009816 172 LVVQMLAGLFQSTGWPSVVAVVGNWFG-KSKRGLIMGIWNAHTSIGNITGSLVASALL-T-------YGWGWSFVVPGLI 242 (524)
Q Consensus 172 ~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~-------~gwr~~f~~~~~~ 242 (524)
.+.-++..++......+-.++.+|..+ ++||++..++...+..+|..+++.+...+. . .+|+....+.+++
T Consensus 113 ~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii 192 (460)
T PRK11462 113 AITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVV 192 (460)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 667777788888888888889999886 689999999999999998888877654443 2 2577777777776
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHH
Q 009816 243 IAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVA 322 (524)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (524)
.+++..+.+...+|.++... ++ .+.+..++..++||.++.+....++.....
T Consensus 193 ~~i~~~i~~~~~kE~~~~~~----~~------------------------~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~ 244 (460)
T PRK11462 193 AFMMLAFCFFTTKERVEAPP----TT------------------------TSMREDLRDIWQNDQWRIVGLLTIFNILAV 244 (460)
T ss_pred HHHHHHHHHhcceeccCCCc----cC------------------------CCHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 66665555554444321110 00 001234567788888877766655555555
Q ss_pred HHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhH
Q 009816 323 YTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSL 402 (524)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (524)
.........|.+.. .|. +...+.+.....++.+++.++.++++||+++|+.+..+.....+..+++.. .+..+.
T Consensus 245 ~~~~~~~~y~~~y~----~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~-~~~~~~ 318 (460)
T PRK11462 245 CVRGGAMMYYVTWI----LGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFF-VPMQAS 318 (460)
T ss_pred HHHHhHhhhhhhhh----cCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-hchhHH
Confidence 55445555555554 343 334455667778888999999999999999988766544433333333322 222233
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 403 ALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 403 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
+...+..++.|++.+...+.......+ ..++++.....+..|...+....+..+|.++++.+.|++.+.
T Consensus 319 ~~~~~~~~l~g~~~~~~~~l~~~m~ad-~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 319 ITMFVFIFVIGVLHQLVTPIQWVMMSD-TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455666654444444444444 334334444446667777888888899999999998888765
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-18 Score=159.01 Aligned_cols=347 Identities=17% Similarity=0.076 Sum_probs=262.9
Q ss_pred hhhHhHHHHHHHHHHHhhhhhhhcccccCCchhh-HHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchh
Q 009816 109 TALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIF-LTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWP 187 (524)
Q Consensus 109 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~-l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~ 187 (524)
.+..|...++..+..++.+|+.|.++|+.|+||- +-....+..++.++..++ ++.+.++..++.-.+..++.....+
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i--~~~s~~~~~l~~~il~~i~~~~s~V 134 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFI--PPGSYLLLLLLFLILASIGFEFSNV 134 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHHhcchhhe
Confidence 4778899999999999999999999999997665 444455555555555554 1113556666677788899888999
Q ss_pred hHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHH--Hhhh-----------------cCchhHHHHhHHHHHHHHH
Q 009816 188 SVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVAS--ALLT-----------------YGWGWSFVVPGLIIAFVGL 248 (524)
Q Consensus 188 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~--~l~~-----------------~gwr~~f~~~~~~~~~~~~ 248 (524)
.-.+++.+..++++-++..+.-.....+|.++.-+... .+.. ..-|..+.+.++--++..+
T Consensus 135 fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~i 214 (438)
T COG2270 135 FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFAL 214 (438)
T ss_pred ehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHh
Confidence 99999999999988888888877777777776654431 1111 1357778888888888878
Q ss_pred HHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 009816 249 IVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYW 328 (524)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (524)
..++..++.++.....+ +. -....++-...+++..+++.+..+.++.++..-...+...+
T Consensus 215 Pm~~~v~~~~~~~~~~~-----------------~~---l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~ 274 (438)
T COG2270 215 PMILNVHDAEKISSPPP-----------------TA---LRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAM 274 (438)
T ss_pred HHHhcccccccccccch-----------------HH---HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHH
Confidence 88887776554220000 00 00112234456778888999999999999988888888899
Q ss_pred HHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 009816 329 LPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIAL 408 (524)
Q Consensus 329 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (524)
...|.... +|++..+..++.....+.+++|+++.|++.||++.|+++..+.++..+..+..... ......+++
T Consensus 275 ~~~fg~~~----~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~---~~~~~f~i~ 347 (438)
T COG2270 275 GGVFGAAD----LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL---EGELDFWIL 347 (438)
T ss_pred HHHHHHHH----cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc---cccHHHHHH
Confidence 99999866 89999999999999999999999999999999999998888877777666555443 223445566
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHH
Q 009816 409 MFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAAL 486 (524)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~ 486 (524)
.++.|.+.++.++..-++..+.+|+ +..++.+|+++..+.....+||.+.+.+.+. +.+..+....++.+
T Consensus 348 gll~g~s~G~~qA~SRSy~~~lvp~--------~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~ 419 (438)
T COG2270 348 GLLVGTSLGGAQASSRSYLARLVPK--------GKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLL 419 (438)
T ss_pred HHHHHHhcchHHHHHHHHHHHhCCC--------ccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 6788999999999999999999985 4458999999999999999999999999887 56666666666555
Q ss_pred HHHHHH
Q 009816 487 ISGLLL 492 (524)
Q Consensus 487 ~~~~~~ 492 (524)
++.++.
T Consensus 420 iGl~~L 425 (438)
T COG2270 420 IGLLLL 425 (438)
T ss_pred hhHhhE
Confidence 554443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-16 Score=148.74 Aligned_cols=332 Identities=16% Similarity=0.095 Sum_probs=238.5
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCC-----chhh-HHHHHHHHHHHHHHHhcccccc-c-----
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLD-----LRIF-LTVGMVGTGLFTSLYGIGYWGN-V----- 165 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G-----rr~~-l~~~~~~~~~~~~~~~~a~~~~-~----- 165 (524)
++++. ...+.+.+...+..- ..+.+|+.+|+.+ ||.. +..|.++...+..+..++.+.- .
T Consensus 10 L~vpA-------~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~ 81 (403)
T PF03209_consen 10 LGVPA-------WLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQS 81 (403)
T ss_pred hccHH-------HHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 66665 667777776665544 6899999999998 7755 5556666666665555432100 1
Q ss_pred --hh-HH--HHHHHHHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchh---HH
Q 009816 166 --HS-FY--YYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGW---SF 236 (524)
Q Consensus 166 --~~-~~--~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~---~f 236 (524)
+. .+ ...+.-.+.|+|.+....+..++++|..|+|+|+++.++.....-+|.+++..+.+.+. +++-.- .+
T Consensus 82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~ 161 (403)
T PF03209_consen 82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI 161 (403)
T ss_pred ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 12 22 23345566899999999999999999999999999999999999999999999888776 554222 22
Q ss_pred HHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHH
Q 009816 237 VVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLF 316 (524)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (524)
...+++.++..++..+- .|.+........+ ++.......+++++.+|+...+....+
T Consensus 162 ~~~a~i~~~l~~ia~wg-~E~r~~~~~~~~~----------------------~~~~~f~~a~~~~~~~~~a~~f~~fl~ 218 (403)
T PF03209_consen 162 QGVALIALLLNLIALWG-QEPRRSRRAAAAE----------------------RPRPPFREAWRQVWASPQARRFFVFLF 218 (403)
T ss_pred HHHHHHHHHHHHHHHHh-cccCCcccccCCC----------------------CCCccHHHHHHHHHhCCChhHHHHHHH
Confidence 23333333333332222 2222111110000 001113455678889999999888888
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHH
Q 009816 317 FAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISD-RLDARAITAASFMYCAIPALFFYR 395 (524)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~~~~~~~~~~~~~~~~~~~~~~~ 395 (524)
+..+.++.--..+=+|-.+. +|++..+...+....+.+.++|-.+.|++.. |.++++...+++..+.++...+..
T Consensus 219 l~t~a~~~QD~iLEPygg~V----fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 219 LGTLAFFMQDVILEPYGGEV----FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL 294 (403)
T ss_pred HHHHHHHhhHHHcCCchhHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 88888777777788888888 8999999999999999999999999998877 567777777888888777766665
Q ss_pred hhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 396 SYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 396 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
.....+.+.+....+++|++.+.......+...+... ++..|..+|.....+.+...++..+.|.+.|.
T Consensus 295 a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~--------~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 295 AGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTS--------AGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred HHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC--------CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555667788888899999988877776676666654 35679999999999999999999999988875
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=159.72 Aligned_cols=356 Identities=16% Similarity=0.150 Sum_probs=220.5
Q ss_pred chhhHhHHHHHHHHHHHhhhhhhhcccccCCc-hhhHHHHHHHHHHHHHHH-hccccccchhHHHHHHHHHHHHHhhhcc
Q 009816 108 GTALLGELDLAFLSIYAGGMFFSGHLGDRLDL-RIFLTVGMVGTGLFTSLY-GIGYWGNVHSFYYYLVVQMLAGLFQSTG 185 (524)
Q Consensus 108 ~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~r~l~G~~~~~~ 185 (524)
+.+..|++.++..++.+++++..|++..|.+. |+.++.|.++..++.++. +++.. ....-+.++++|++.|+|.+.
T Consensus 69 ~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~-~~~~~y~mL~~R~l~Gvg~~n- 146 (488)
T KOG2325|consen 69 TATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV-PNGVKYLMLVARILTGVGVGN- 146 (488)
T ss_pred CcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHcCcCccc-
Confidence 34889999999999999999999999999997 888899999999999988 44322 223788999999999999765
Q ss_pred hhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhc---Cc-----------hhHHHHhHHHHHHHHHHHH
Q 009816 186 WPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTY---GW-----------GWSFVVPGLIIAFVGLIVF 251 (524)
Q Consensus 186 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~---gw-----------r~~f~~~~~~~~~~~~~~~ 251 (524)
.....+|+++-...++|.++++....+..+|.++||.++..+... || -.+=|+++++.++..+...
T Consensus 147 ~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~ 226 (488)
T KOG2325|consen 147 FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIIL 226 (488)
T ss_pred HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHH
Confidence 577789999988889999999999999999999999988777531 22 2356677778888878888
Q ss_pred HhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 252 LFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPF 331 (524)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (524)
++++|.++....++..+++..+ .+. ++.+..+.++ +..+.+.+..+...+......+..+.
T Consensus 227 ~~f~E~~~~~~~~~~~~~~~~~--~~~-----------~~~~~~~~d~------~~~~vc~~~~~~~~~~~~~iet~~~~ 287 (488)
T KOG2325|consen 227 FFFKEVYRGIIDKKKRSVEEEK--SDI-----------EKVKKPKLDW------VAVLVCIFLRFVVNFIATTIETLSSA 287 (488)
T ss_pred hheeecccCccccccccchhhc--cch-----------hhhccCChhH------HHHHHHHHHHHHHHHHHHHHHhccch
Confidence 8888876654322211110000 000 0000000000 11122333333334444444444555
Q ss_pred HHhhcccCCCCCChhhhhh----HHHHHHHHHHhhhHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHhh---------
Q 009816 332 YVSHTAVDGKYLSSEMAGN----LSTLFDVGGVLGGILAGHIS-DRLDARAITAASFMYCAIPALFFYRSY--------- 397 (524)
Q Consensus 332 ~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~g~l~-dr~~~~~~~~~~~~~~~~~~~~~~~~~--------- 397 (524)
..... ++++..++-. ..++.++..+.-.+...+.. .++.+|+.+..+++.......+.....
T Consensus 288 ~~m~~----y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~ 363 (488)
T KOG2325|consen 288 LTMVM----YGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQP 363 (488)
T ss_pred HHHHH----hccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeecccccccccc
Confidence 55554 5666555543 33444443333333333332 222344444444333332222221100
Q ss_pred -c------------------chhHHHH-HHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhh
Q 009816 398 -G------------------HLSLALN-IALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSV 457 (524)
Q Consensus 398 -~------------------~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 457 (524)
+ ..+.+.. ....+++|.+.-.......+..++.+++ +..++..|+.......
T Consensus 364 ~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp--------~~q~~~qg~~~~~~s~ 435 (488)
T KOG2325|consen 364 YNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGP--------RDQGTMQGVFSISGSI 435 (488)
T ss_pred ccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCC--------ccccceeEEEEeccch
Confidence 0 0001111 1123344555555555677888888875 5558899999999999
Q ss_pred hhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHHH
Q 009816 458 GAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRLV 496 (524)
Q Consensus 458 g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
+..++|.+...+... |+++.+.+..+..++...+...+.
T Consensus 436 ~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~ 475 (488)
T KOG2325|consen 436 ARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFL 475 (488)
T ss_pred hhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877777 888887777766665555544433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-15 Score=142.54 Aligned_cols=374 Identities=16% Similarity=0.142 Sum_probs=229.4
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccC-CchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhh
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRL-DLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPS 188 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 188 (524)
++..-+.+.|.--.-+..+++|+++||+ |+|+++.+|.++.++|.++.+.+. ..+...++++-++.++|.|..-+.
T Consensus 61 ~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---~~~~~gl~i~L~~I~iG~Gl~K~N 137 (498)
T COG3104 61 THATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---VSGPGGLYIGLALIIVGTGLFKPN 137 (498)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---cccccHHHHHHHHHHhcccccccc
Confidence 6666677777777778889999999995 999999999999999999999850 136888999999999999999999
Q ss_pred HHHHHhhccccc--cccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 009816 189 VVAVVGNWFGKS--KRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDT 265 (524)
Q Consensus 189 ~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (524)
..+++.|.+|++ +|-..+++++.+.++|..++|++.+++. ++||...|-..++ +...+++.+...+..-......+
T Consensus 138 iS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aav-Gm~~gl~~f~~~~r~~~~~~~~~ 216 (498)
T COG3104 138 ISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAV-GMIIGLVIFLLGRRHVKGIGGVP 216 (498)
T ss_pred HHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHH-HHHHHHHHHHHccchhcCCCCCC
Confidence 999999999864 3777899999999999999999999998 6899999998655 55555666655553322211111
Q ss_pred ccccccCCccc-cCCC-----cccc--cccchhhhh---------hhhhhHHHHhcCCC----------cHHHHHHHHHH
Q 009816 266 NEEDESLSPKK-IGEG-----VTQP--LLRRETKIE---------EKAVGFIEAWKIPG----------VAPFALCLFFA 318 (524)
Q Consensus 266 ~~~~~~~~~~~-~~~~-----~~~~--~~~~~~~~~---------~~~~~~~~~~~~~~----------~~~~~~~~~~~ 318 (524)
+.......... .... .... .....+... ....-+.+.++++. ...+.+...+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iF 296 (498)
T COG3104 217 DPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIF 296 (498)
T ss_pred CccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHH
Confidence 11000000000 0000 0000 000000000 00000111111111 12223333333
Q ss_pred HHHHHHHHHHHHHHHhhcccCC-CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhh-------HHHHHHHHHHHHHH
Q 009816 319 KLVAYTFLYWLPFYVSHTAVDG-KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDAR-------AITAASFMYCAIPA 390 (524)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~-------~~~~~~~~~~~~~~ 390 (524)
+..+....+.+..|..+....+ +|++ -...+..+...+.-++..++..++..|.+++ .-..++..+++.+.
T Consensus 297 W~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~f 375 (498)
T COG3104 297 WALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGF 375 (498)
T ss_pred HHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHH
Confidence 4444444566666665543222 2322 2334566667777777777777777774433 22345555555555
Q ss_pred HHHHHh-------hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhh
Q 009816 391 LFFYRS-------YGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGP 463 (524)
Q Consensus 391 ~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~ 463 (524)
+++... ....+.++.+...++.+++--...+.-...+.+..|+ +..+.++++.......+..++.
T Consensus 376 l~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~--------~~~s~~ma~wfLt~a~~~~l~g 447 (498)
T COG3104 376 LILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPP--------ALKSFIMAMWFLTVAAGQTLGG 447 (498)
T ss_pred HHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChH--------HHHHHHHHHHHHHHHHHHHhhc
Confidence 444332 1224677778888888888777777788888888773 5667777777766666666666
Q ss_pred hhhHhh------ccc-ChhHHHHHHHHHHHHHHHHHHHHH
Q 009816 464 LLTGYI------SAT-SWTAVFTMLMAAALISGLLLTRLV 496 (524)
Q Consensus 464 ~~~g~l------~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
.+.+.. .+. .....|+.++....+.........
T Consensus 448 ~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~ 487 (498)
T COG3104 448 QVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLS 487 (498)
T ss_pred eecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 665521 111 455677777776666555544333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-16 Score=155.73 Aligned_cols=262 Identities=18% Similarity=0.273 Sum_probs=198.8
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhcccc---------------
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYW--------------- 162 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~--------------- 162 (524)
|+++. ++.|++.+.|-++..+...+..++.-|..|-+.+-+|.++++++.+++++--+
T Consensus 127 F~i~S-------s~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~ 199 (735)
T KOG3626|consen 127 FKISS-------SQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQS 199 (735)
T ss_pred cCCCC-------CcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcc
Confidence 88887 88999999999999999999999999999999999999999999999987200
Q ss_pred ---c---------------------------cch--hHHHHHHHHHHHHHhhhcchhhHHHHHhhccccccccceehhhh
Q 009816 163 ---G---------------------------NVH--SFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWN 210 (524)
Q Consensus 163 ---~---------------------------~~~--~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 210 (524)
. ..+ -+..++++.++.|+|....++...+|+-|...+++-+..+|++.
T Consensus 200 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~ 279 (735)
T KOG3626|consen 200 VENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILY 279 (735)
T ss_pred ccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHH
Confidence 0 000 13367789999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhhh----c----------------CchhHHHHhHHHHHHHHHHHHHhcCCC-CCCCCCCCcccc
Q 009816 211 AHTSIGNITGSLVASALLT----Y----------------GWGWSFVVPGLIIAFVGLIVFLFLPVN-PESVGTDTNEED 269 (524)
Q Consensus 211 ~~~~~G~~ig~~l~~~l~~----~----------------gwr~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 269 (524)
....+|.++|-++|+++.+ + -|..-|++.+.+.++.++.+++ +|+. |+...+.+..+.
T Consensus 280 ~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~-fPk~lp~~~~~~~~~~~ 358 (735)
T KOG3626|consen 280 SMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF-FPKELPKSQKRKRARDL 358 (735)
T ss_pred HHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh-CcccCccccccchhhhh
Confidence 9999999999999998863 1 1555677777777777665544 4544 332221110000
Q ss_pred ccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhh
Q 009816 270 ESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAG 349 (524)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 349 (524)
...+.+ +...+......++.++.+...+++++||.+....+...+....+.++.+++|-|++.+ +|.++..+.
T Consensus 359 ~~~k~~---~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Q----fg~sas~An 431 (735)
T KOG3626|consen 359 HVLKTE---SGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQ----FGISASLAN 431 (735)
T ss_pred cccccc---cccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHH----cCCCHHHHH
Confidence 000000 0001111111223445677889999999999999999999999999999999999999 999999999
Q ss_pred hHHHHHHHH-HHhhhHHHHHHHhhhh
Q 009816 350 NLSTLFDVG-GVLGGILAGHISDRLD 374 (524)
Q Consensus 350 ~~~~~~~~~-~~~~~~~~g~l~dr~~ 374 (524)
.+....++. ..+|.+++|++..|+.
T Consensus 432 ~l~G~i~vp~~~~Gi~lGG~iikkfk 457 (735)
T KOG3626|consen 432 ILTGSIGVPAAAVGIFLGGLIIKKFK 457 (735)
T ss_pred HHhhhhhhhhhhhhhhccceeeeeec
Confidence 988665544 4567788999999874
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.5e-19 Score=176.68 Aligned_cols=356 Identities=18% Similarity=0.241 Sum_probs=3.0
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhcccc---------------
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYW--------------- 162 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~--------------- 162 (524)
|+++. ++.|++.+.|-++..+..++..++.+|..|-|.+-.|.++.+++++++++--+
T Consensus 33 F~l~S-------~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~ 105 (539)
T PF03137_consen 33 FGLSS-------SQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG 105 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence 88888 99999999999999999999999999999999999999999999999876210
Q ss_pred --------c----------------------cchhHHHHHHHHHHHHHhhhcchhhHHHHHhhccccccccceehhhhhh
Q 009816 163 --------G----------------------NVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAH 212 (524)
Q Consensus 163 --------~----------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 212 (524)
- ...-+..++++.++.|+|.+..++...+|+-|..++++-+..+|+..+.
T Consensus 106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~ 185 (539)
T PF03137_consen 106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM 185 (539)
T ss_dssp ----------------------------------------------SSS-------------------------------
T ss_pred ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence 0 0002467888999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhc----------------------C-chhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 009816 213 TSIGNITGSLVASALLTY----------------------G-WGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEED 269 (524)
Q Consensus 213 ~~~G~~ig~~l~~~l~~~----------------------g-wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (524)
..+|.++|-++++.+.++ | |=.-|++.+++.++.++..+.+-++-|......+..+.
T Consensus 186 ~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~ 265 (539)
T PF03137_consen 186 SILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKES 265 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhh
Confidence 999999999999876531 1 44446666666666655554443333333111110000
Q ss_pred ccCCcccc-CCCcccc--cccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChh
Q 009816 270 ESLSPKKI-GEGVTQP--LLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSE 346 (524)
Q Consensus 270 ~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 346 (524)
+....++. .+...++ ........++.....+++++||.+....++.........++.+++|-|++.+ ++.++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~Q----F~~sas 341 (539)
T PF03137_consen 266 SERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQ----FGLSAS 341 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCHH
Confidence 00000000 0000000 0001122334556778899999999999999998889999999999999998 899999
Q ss_pred hhhhHHHHHHH-HHHhhhHHHHHHHhhhhh--hHHHHHHHHHHHHHHHH---HHHh-----------hcc----------
Q 009816 347 MAGNLSTLFDV-GGVLGGILAGHISDRLDA--RAITAASFMYCAIPALF---FYRS-----------YGH---------- 399 (524)
Q Consensus 347 ~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~--~~~~~~~~~~~~~~~~~---~~~~-----------~~~---------- 399 (524)
+++++.....+ +..+|.+++|++.+|++- |..+....+...+..+. ..+. .+.
T Consensus 342 ~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~ 421 (539)
T PF03137_consen 342 QASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSC 421 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCC
Confidence 99988765554 667888999999999843 33332222222221111 1100 000
Q ss_pred ---------------------------hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHH
Q 009816 400 ---------------------------LSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIID 452 (524)
Q Consensus 400 ---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 452 (524)
.....+++..++..+..+....+........+++ ++|+.+.|+..
T Consensus 422 ~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~--------~~rs~AlGv~~ 493 (539)
T PF03137_consen 422 NLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPP--------EQRSFALGVQW 493 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCCh--------hhcchhhhHHH
Confidence 0011222333333344444455555566666663 66789999988
Q ss_pred hhh-hhhhhhhhhhhHhhccc
Q 009816 453 GTG-SVGAAIGPLLTGYISAT 472 (524)
Q Consensus 453 ~~~-~~g~~i~~~~~g~l~~~ 472 (524)
.+. -+|.+-+|.+.|++.|.
T Consensus 494 ~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 494 LIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ---------------------
T ss_pred HHHHhhcCcchHHHHhHHHhh
Confidence 765 56778899999999987
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-14 Score=140.18 Aligned_cols=317 Identities=16% Similarity=0.167 Sum_probs=217.0
Q ss_pred HHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhh--hcchhhHHHHHhhc
Q 009816 119 FLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQ--STGWPSVVAVVGNW 196 (524)
Q Consensus 119 ~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~--~~~~~~~~~~i~~~ 196 (524)
-.+...+.++..|.++||+|||..+.+..+...+..++..+ ..+|.+. +.|+.. +.......++++|.
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~------~~~~~~~----~~~l~g~~~~~~s~~~a~vadi 140 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF------QGYWFFL----LLGLSGGFSAIFSVGFAYVADI 140 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH------HHHHHhh----hcccccchhhhhhhhhhheeec
Confidence 36677889999999999999999999999999999888888 4444444 444322 34578888999999
Q ss_pred cccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCcc
Q 009816 197 FGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPK 275 (524)
Q Consensus 197 ~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (524)
...++|....++.......+..++|.+++.+. ..|.-.+|++.++..++..+..++++||+..+......+.. ....
T Consensus 141 s~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~--~~~~ 218 (463)
T KOG2816|consen 141 SSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLR--ELTP 218 (463)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccc--ccCC
Confidence 99999999999999999999999999999998 56888999998888888888888889887544322210000 0000
Q ss_pred ccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccCCCCCChhhhhhHHHH
Q 009816 276 KIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLY-WLPFYVSHTAVDGKYLSSEMAGNLSTL 354 (524)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~ 354 (524)
+.. ......+........-.+|..+.+++..++.......-.. .++.|+... ++++..+.+.+.+.
T Consensus 219 ~~~---------~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~----f~w~~~~~s~~~~~ 285 (463)
T KOG2816|consen 219 GSL---------DSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK----FGWNKKEFSDLLSL 285 (463)
T ss_pred Ccc---------cchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeee----cCcCHHHHHHHHHH
Confidence 000 0000001111111222344455545544444443332222 345566666 89999999998888
Q ss_pred HHHHHHhhhHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcc
Q 009816 355 FDVGGVLGGILAG-HISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGT 433 (524)
Q Consensus 355 ~~~~~~~~~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (524)
.+....++.++.. .+...++.++.+..+...-.+..+...+. ...|..+... ..........+...+..+...++
T Consensus 286 ~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~---~~~w~~~~~~-v~~~~~~~~~pa~~s~~s~~v~~ 361 (463)
T KOG2816|consen 286 VSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA---TETWMMFAAG-VVVALAGIVFPAIRAFASILVSP 361 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh---ccchhhhHHH-HHHHhhcchhHHHHhHHHhhccc
Confidence 8888888888776 67777888887777776666666665543 2333323322 23334455566667777777664
Q ss_pred cccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 434 HSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 434 ~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
+.+|.+.++...+..+...++|.+.+.+...
T Consensus 362 --------~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 362 --------EEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred --------ccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 5569999999999999999999998877543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.5e-15 Score=122.28 Aligned_cols=136 Identities=18% Similarity=0.306 Sum_probs=121.0
Q ss_pred HHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhh
Q 009816 116 DLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGN 195 (524)
Q Consensus 116 ~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~ 195 (524)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.++...+ ++++.+.+.+++.|++.+...+...+++.|
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----SNITVLIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 355678888999999999999999999999999999888888876 889999999999999999999999999999
Q ss_pred ccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCC
Q 009816 196 WFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPV 256 (524)
Q Consensus 196 ~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 256 (524)
.+|+++|++..++......+|..++|.+++.+. ..+|++.|++.+++.++..+..++..||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999887 4689999999888777776666665554
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.9e-13 Score=130.87 Aligned_cols=173 Identities=13% Similarity=0.122 Sum_probs=133.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHH
Q 009816 306 PGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMY 385 (524)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 385 (524)
+.++.+.+..++..........++|.|+++. +|++..+.|+..+...++.++++++.|+++||+|||+.+..+...
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~----~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~ 82 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQ----YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITA 82 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHH
Confidence 3466677777888888888889999999876 799999999999999999999999999999999999988877776
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhh
Q 009816 386 CAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLL 465 (524)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 465 (524)
..++.+.+.. .++.+..+....+.+.+.+...+.......+..+ ++.|+++.|+.+...++|.+++|.+
T Consensus 83 ~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~lg~~igp~l 151 (395)
T PRK10054 83 FASGFIAIPL---VNNVTLVVLFFALINCAYSVFSTVLKAWFADNLS--------STSKTKIFSLNYTMLNIGWTVGPPL 151 (395)
T ss_pred HHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554433 2344444444445555555555556666666665 3678999999999999999999999
Q ss_pred hHhhcccChhHHHHHHHHHHHHHHHHHH
Q 009816 466 TGYISATSWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 466 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 493 (524)
.+++.+.+|+..|++.+++.++..++..
T Consensus 152 ~~~l~~~g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 152 GTLLVMQSINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 9998866899999988777666544433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-13 Score=133.20 Aligned_cols=344 Identities=15% Similarity=0.139 Sum_probs=213.1
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCC-----chhhHHHHHHHHHHHHHHHhccccccchhHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLD-----LRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYL 172 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G-----rr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 172 (524)
+|+++ ++.....+...+...+ .++.|.++|-+. ||+-++++.++.+++.+..+... ....+.....
T Consensus 20 l~ls~-------~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~-~~~~s~~~~~ 90 (433)
T PF03092_consen 20 LGLSP-------AQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP-ASESSAAIAV 90 (433)
T ss_pred cCCCH-------HHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc-cccchhhhHH
Confidence 78777 8887777777766654 578899999863 55667778777765555555421 1124566667
Q ss_pred HHHHHHHHhhhcchhhHHHHHhhcccc--ccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHH
Q 009816 173 VVQMLAGLFQSTGWPSVVAVVGNWFGK--SKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLI 249 (524)
Q Consensus 173 ~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~ 249 (524)
+.-++..+|.+.....+-+++.|...+ ++||...+.......+|.+++..++|.+. ..+++..|.+.+++..+..+.
T Consensus 91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~ 170 (433)
T PF03092_consen 91 VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIV 170 (433)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence 777888899999999999999998843 34677888888899999999999998888 568999999988887777665
Q ss_pred HHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHH
Q 009816 250 VFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFAL-CLFFAKLVAYTFLYW 328 (524)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 328 (524)
..+..+|. ......+. ....+ ++. .......++.....++.++.|.++...+ ..++..........
T Consensus 171 ~~~~~~e~-~~~~~~~~--~~~~~--~~~-------~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a- 237 (433)
T PF03092_consen 171 ALFLLEER-KVRPADEV--FSFGK--EEV-------PCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSA- 237 (433)
T ss_pred HHHhhhhc-cccccchh--hcccc--ccc-------chhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCc-
Confidence 66655552 11111000 00000 000 0000002234455667777777776655 22222111111000
Q ss_pred HHHHH-hhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcc-------h
Q 009816 329 LPFYV-SHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGH-------L 400 (524)
Q Consensus 329 ~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 400 (524)
-..|. .+. ..+.|+++...+.+..+..++.++|..+..+...+..-|+++....++..+..+.-...... +
T Consensus 238 ~~fy~~~~~-~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~ 316 (433)
T PF03092_consen 238 SSFYFQTDA-LGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIP 316 (433)
T ss_pred cEEEEEecc-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcC
Confidence 00111 111 01234889888888888888888888888777777777777766665554443322111110 1
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 401 SLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
+.+..+.-..+..+.....+-+....+.+..|+ ..-|+..++...+.++|..++..+...+.+.
T Consensus 317 d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~--------G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~ 380 (433)
T PF03092_consen 317 DQWFALGDTILEEVIGMIAFMPSLVLAARLCPK--------GSEGTVYALLASFSNLGSSVSSTLGAFLMEL 380 (433)
T ss_pred CeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCC--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122223344444455556667777888875 4448999999999999999988888777654
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.5e-12 Score=117.19 Aligned_cols=231 Identities=15% Similarity=0.110 Sum_probs=159.3
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
+|.++ .|++.+....+....+.+++.|.++||+|||+.-++.+++.+++.+.-.. ++++.+++.|++
T Consensus 64 yg~~~-------~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~------~~~~~L~~GRvl 130 (354)
T PF05631_consen 64 YGFSE-------HQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS------SNYPVLLLGRVL 130 (354)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc------cccHHHHHHHHH
Confidence 67777 99999999999999999999999999999999999999999998876665 899999999999
Q ss_pred HHHhhhcchhhHHHHH-hhcc----ccccccceehhhh-hhhhhHHHHHHHHHHHhhh-c--CchhHHHHhHHHHHHHHH
Q 009816 178 AGLFQSTGWPSVVAVV-GNWF----GKSKRGLIMGIWN-AHTSIGNITGSLVASALLT-Y--GWGWSFVVPGLIIAFVGL 248 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i-~~~~----~~~~r~~~~~~~~-~~~~~G~~ig~~l~~~l~~-~--gwr~~f~~~~~~~~~~~~ 248 (524)
.|++.+..+.+-.+++ .|.- |++..+.-++... ..+++-.+++.+++.++.+ . |-..+|....++.++.++
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~ 210 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV 210 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999999999888875 4432 2222222222222 2233344555556655552 3 457889887777776666
Q ss_pred HHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHH-H
Q 009816 249 IVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFL-Y 327 (524)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 327 (524)
++....+|......... + ..++....++.+.+||+++.+.+...+.-...+.+. .
T Consensus 211 ~I~~~W~ENyg~~~~~~-~-----------------------~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVfl 266 (354)
T PF05631_consen 211 LILKTWPENYGDTSSSS-S-----------------------LSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFL 266 (354)
T ss_pred HHHhcccccCCCccccc-c-----------------------hHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheee
Confidence 65555555433211100 0 001123345667889999888888777766655443 5
Q ss_pred HHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhh
Q 009816 328 WLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDR 372 (524)
Q Consensus 328 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 372 (524)
|.|..-.+ + ...-.|++++.+.++.++|+.+..++..+
T Consensus 267 WtPaL~~~------~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 267 WTPALDPD------D-EELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred eeceecCC------C-CCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 66655422 1 23347899999999999999888766554
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-13 Score=133.08 Aligned_cols=149 Identities=10% Similarity=0.110 Sum_probs=127.2
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
...+...+...++..++.++.|+++||+|||++++++.++.+++..+...+. ....+++.+++.+++.|++.+...+..
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~-~~~~~~~~l~l~~~l~g~~~~~~~~~~ 329 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD-PEYFGYALLFLSMIVYGCAFDFFNISG 329 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999999999999999999888876666530 001235677888999999999888999
Q ss_pred HHHHhhccccccccceehhhh-hhhhhHHHHHHHHHHHhhh-------cCchhHHHHhHHHHHHHHHHHHHhcCCCCC
Q 009816 190 VAVVGNWFGKSKRGLIMGIWN-AHTSIGNITGSLVASALLT-------YGWGWSFVVPGLIIAFVGLIVFLFLPVNPE 259 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~l~~~l~~-------~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~ 259 (524)
..++.|++|+++|++++++.+ ...++|..+||+++|.+.+ +||+..|.+.+++.++..++.+++++|+..
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999999999999997 6788999999999998873 469999999999888888888888887633
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-12 Score=129.23 Aligned_cols=166 Identities=22% Similarity=0.244 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 009816 311 FALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPA 390 (524)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 390 (524)
..+..++.++........+|.+.++ +|++..+.+++.+...++..+++++.|++.||+|+|+.+..+.++..++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~ 102 (434)
T PRK11663 28 MYLGYALFYFTRKSFNAAMPEMLAD-----LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIIN 102 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHH
Confidence 3344444444445666778888877 59999999999999999999999999999999999999888888777766
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhc
Q 009816 391 LFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYIS 470 (524)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 470 (524)
++... .++.+...+..++.|++.+..++.....+.+.++ ++.|++++|+.+....+|..++|.+.+++.
T Consensus 103 ~~~~~---~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~--------~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 103 ILFGF---SSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYS--------RTERGGWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred HHHHH---HhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543 2455555555666777777777777788888776 367899999999999999999999999998
Q ss_pred cc-ChhHHHHHHHHHHHHHHHHH
Q 009816 471 AT-SWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 471 ~~-~~~~~~~~~~~~~~~~~~~~ 492 (524)
+. +|+..|++.+++.++..++.
T Consensus 172 ~~~gw~~~f~~~~i~~~~~~~~~ 194 (434)
T PRK11663 172 LHYGWRYGMMIAGIIAIVVGLFL 194 (434)
T ss_pred HcccHHHHHHHHHHHHHHHHHHH
Confidence 87 99999988877655444433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-13 Score=133.68 Aligned_cols=145 Identities=17% Similarity=0.147 Sum_probs=125.7
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
.+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++ ++.+.+.+.+++.|++.+...+..
T Consensus 262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 262 RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-----TGPLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999988888888876 788889999999999988888888
Q ss_pred HHHHhhccccccccceehh-hhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCC
Q 009816 190 VAVVGNWFGKSKRGLIMGI-WNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPE 259 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~ 259 (524)
..++.+.+|++.|+...+. ++....+|.+++|.+.|++. .+||+..|.+.+++.++..++.++.++++++
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~ 408 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDRE 408 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 8999999999888887665 66778899999999999998 4799999999888887776666666655433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-10 Score=107.43 Aligned_cols=329 Identities=16% Similarity=0.133 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHH
Q 009816 114 ELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVV 193 (524)
Q Consensus 114 ~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i 193 (524)
-+.-...-.+....++...+.|..+.|++++++.+...+...+..+. ++...+-+..+..|++.+. ..+-++++
T Consensus 45 ~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~-----~sv~~mq~~q~~yg~~~a~-evay~sYi 118 (412)
T PF01770_consen 45 EIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG-----TSVLAMQLMQFFYGLATAA-EVAYYSYI 118 (412)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-----CcHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 44555666777888999999999999999999999988888888886 9999999999999999876 67788999
Q ss_pred hhccccccccceehhhhhhhhhHHHHHHHHHHHhhhcC---chhHHHHhHHHHHHHHHHHHHhcCCCCCCC---CCCCcc
Q 009816 194 GNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYG---WGWSFVVPGLIIAFVGLIVFLFLPVNPESV---GTDTNE 267 (524)
Q Consensus 194 ~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~g---wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 267 (524)
-...|+++-.++.+...++.-+|..++.++|-.+.+.+ .+...++. +....++++..+++|..++.. +....+
T Consensus 119 ys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~is-l~~~~~a~~~~~fLP~~~~S~~f~r~~~~~ 197 (412)
T PF01770_consen 119 YSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYIS-LASVSLALLIALFLPMPKRSLFFHRKPPAE 197 (412)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHHHHHHHcCCCCcccceeccCccc
Confidence 99999999999999999999999999999998887643 44444443 333444455667777654421 111110
Q ss_pred ccc-cCCccccCCCcc------cccc----cchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009816 268 EDE-SLSPKKIGEGVT------QPLL----RRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHT 336 (524)
Q Consensus 268 ~~~-~~~~~~~~~~~~------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (524)
+.. ..+.++..+..+ ++.. +...........+++..++|.++...+...+...++....++......+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v 277 (412)
T PF01770_consen 198 QDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTV 277 (412)
T ss_pred cccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 000 000000000000 0000 00111122345667778899998888888887777777666655555443
Q ss_pred ccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhh
Q 009816 337 AVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFV 416 (524)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 416 (524)
++.+-....-|.+-+...+.+.++.+..|++..++.+...+.++......+.+++.. ....+.+...+..++++..+
T Consensus 278 --~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm-~~t~~Iwv~Y~~yIif~~~y 354 (412)
T PF01770_consen 278 --PPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLM-SFTGNIWVCYAGYIIFRSLY 354 (412)
T ss_pred --CCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHH
Confidence 112344455677777788888888899999866665544444333332222222222 23467788888888887777
Q ss_pred hhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhh
Q 009816 417 NGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAA 460 (524)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 460 (524)
....+.....++..+. .+..|...|++.++..+-..
T Consensus 355 ~fliTiA~~qIA~~l~--------~e~yaLVFGiNtf~Al~LQt 390 (412)
T PF01770_consen 355 MFLITIASFQIAKNLS--------EERYALVFGINTFVALVLQT 390 (412)
T ss_pred HHHHHHHHHHHHHhcc--------ccceeeeeeeHHHHHHHHHH
Confidence 7766666666666554 25567777777665544333
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.2e-12 Score=123.57 Aligned_cols=165 Identities=22% Similarity=0.311 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 009816 313 LCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALF 392 (524)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 392 (524)
+..++...........+|.++.+. +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+.+++.++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 78 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEE----LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLL 78 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCC----STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHH
Confidence 445556666666777777555555 7999999999999999999999999999999999999888888888777444
Q ss_pred HHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 393 FYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
..+. .+.+..++..++.|++.+...+.....+.+..++ +.|+++.++.+....+|..++|.+.+.+.+.
T Consensus 79 ~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 147 (352)
T PF07690_consen 79 LAFA---SNFWLLLIARFLLGIGSGFFSPASNALIADWFPP--------EERGRAFGILSAGFSLGSILGPLLGGFLISY 147 (352)
T ss_dssp HHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred hhhh---hhHHHHhhhccccccccccccccccccccccchh--------hhhhhccccccchhhhhhhcccchhhhhhhc
Confidence 4321 4455777888889999888899988999888874 5679999999999999999999999999876
Q ss_pred -ChhHHHHHHHHHHHHHHHHH
Q 009816 473 -SWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 473 -~~~~~~~~~~~~~~~~~~~~ 492 (524)
+|+..|++.+++.++..++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 148 FGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp CHHCCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhhhH
Confidence 89999999988888776643
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-12 Score=125.44 Aligned_cols=171 Identities=16% Similarity=0.069 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 009816 310 PFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIP 389 (524)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 389 (524)
.+....++..+........+|.|..+. +.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..++
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~ 77 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVLAG-----TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVL 77 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHH
Confidence 355666677777777778889988874 889999999999999999999999999999999999998887776665
Q ss_pred HHHHHHhh--cchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhH
Q 009816 390 ALFFYRSY--GHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTG 467 (524)
Q Consensus 390 ~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g 467 (524)
.+...... ...+.+..++..++.|++.+...+.....+.+..++ +.|+++.|+.+....+|..++|.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~g~~l~~ 149 (365)
T TIGR00900 78 VAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE--------EQLTQANSLSQAVRSLFYIVGPGIGG 149 (365)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--------HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55544321 112566677777888888888888888888887763 67899999999999999999999999
Q ss_pred hhccc-ChhHHHHHHHHHHHHHHHHHH
Q 009816 468 YISAT-SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 468 ~l~~~-~~~~~~~~~~~~~~~~~~~~~ 493 (524)
++.+. +|+..|++.++..+++.+...
T Consensus 150 ~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 150 LMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99877 899988887766555444433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.5e-13 Score=122.95 Aligned_cols=173 Identities=21% Similarity=0.278 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 009816 310 PFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIP 389 (524)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 389 (524)
...+.+...++.--.+..-.|...++ .++|..+.|.+.+.+.+..-++.++.|.++||.+.|+.+..+.++.++.
T Consensus 33 ~~fiGYa~fYl~RknF~~a~p~l~e~-----~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~ 107 (448)
T COG2271 33 SIFIGYAAFYLTRKNFNLAMPALIED-----GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIV 107 (448)
T ss_pred HHHHHHHHHHHHHHhHhhccHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHH
Confidence 33444444444444555666666666 4899999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhh--H
Q 009816 390 ALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLT--G 467 (524)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~--g 467 (524)
.+++.+ ..+.+.+.++..+.|++.+..++++...+..-++. +.||+..++.|++.++|+.+.|++. +
T Consensus 108 nil~Gf---s~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr--------~eRG~~~siWn~shNiGGal~~~~~~la 176 (448)
T COG2271 108 NILFGF---SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR--------KERGTWWSIWNTSHNIGGALAPLVALLA 176 (448)
T ss_pred HHHHhh---hhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc--------cccCceEEEehhhhhcccchHHHHHHHH
Confidence 888765 35788888899999999999999999999999884 6679999999999999999999999 8
Q ss_pred hhccc-ChhHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 468 YISAT-SWTAVFTMLMAAALISGLLLTRLVVA 498 (524)
Q Consensus 468 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (524)
++.++ +|+..|++-++++++..++.+...+.
T Consensus 177 ~~~~~~~w~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 177 FFAFHGGWRAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88887 99999999999888877776655443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-12 Score=124.39 Aligned_cols=173 Identities=14% Similarity=0.151 Sum_probs=130.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhh-hhhHHHHHHHHH
Q 009816 307 GVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRL-DARAITAASFMY 385 (524)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~ 385 (524)
.++......+...+.+++...++|.|+++. +|++..+++.+...+.....++.+++|+++||+ |||+.+..+.++
T Consensus 10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~----lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 10 AIYYVVALQIWEYFSFYGMRALLILYLTNQ----LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 355556666777888899999999999887 799999999999999999999999999999999 999999888888
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhh
Q 009816 386 CAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLL 465 (524)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 465 (524)
.+++.+++... ..+.....+...+..++.+...+...+.+.+.+|++ ++.|.++.++.....++|+.++|.+
T Consensus 86 ~~lg~lll~~~--~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~------~~~R~sgf~i~Y~~~nlG~~iap~l 157 (493)
T PRK15462 86 MAIGHVVLGAS--EIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPT------DPRRDGGFSLMYAAGNVGSIIAPIA 157 (493)
T ss_pred HHHHHHHHHHh--hcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCC------CccccceehHHHHHHHHHHHHHHHH
Confidence 87776544321 111122233333344444555555667778887753 2356778999999999999999999
Q ss_pred hHhhccc-ChhHHHHHHHHHHHHHHHH
Q 009816 466 TGYISAT-SWTAVFTMLMAAALISGLL 491 (524)
Q Consensus 466 ~g~l~~~-~~~~~~~~~~~~~~~~~~~ 491 (524)
.+++.+. ||+..|.+.++..+++.+.
T Consensus 158 ~g~L~~~~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 158 CGYAQEEYSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHhhhChHHHHHHHHHHHHHHHHH
Confidence 9999877 9999998876655444433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.4e-12 Score=126.17 Aligned_cols=180 Identities=14% Similarity=0.100 Sum_probs=134.8
Q ss_pred HHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhh-hhhhHH
Q 009816 301 EAWKIPG-VAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDR-LDARAI 378 (524)
Q Consensus 301 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~ 378 (524)
+.+++|+ ++......++..+.++....+++.|+++. +|++..+++.+............+++|+++|| +|||+.
T Consensus 15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~----lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~ 90 (500)
T PRK09584 15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQ----LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV 90 (500)
T ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 4556775 77777777888888899999999999887 89999988887777665555556789999999 599999
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhh
Q 009816 379 TAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVG 458 (524)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 458 (524)
+..+..+.+++..++... ..+.+...+...+.|++.+...+.....+.+.+|+++ +.+..+.++.+...++|
T Consensus 91 ~~~g~~~~~ig~~l~~~~--~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~------~~~~~~~~~~~~~~~iG 162 (500)
T PRK09584 91 IMLGAIVLAIGYALVAWS--GHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD------PRLDGAFTMYYMSINIG 162 (500)
T ss_pred HHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc------hhhhhcchHHHHHHHHH
Confidence 998888877766555432 1223334455566777777767777777887776431 33455778888899999
Q ss_pred hhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHH
Q 009816 459 AAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 459 ~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~ 492 (524)
..++|.+.|++.+. ||+..|.+.++..+++.+..
T Consensus 163 ~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~ 197 (500)
T PRK09584 163 SFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNF 197 (500)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 99999998776555554433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.5e-13 Score=137.27 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=120.8
Q ss_pred HhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHH
Q 009816 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVA 191 (524)
Q Consensus 112 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 191 (524)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++ ++...+++.+++.|++.+..++...+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~-----~s~~~ll~~~~l~g~~~~~~~~~~~a 671 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG-----NSESAMIALLCLFGGLSIAAWNALDV 671 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667789999999999999999999999999999999999888886 67777888889999888888999999
Q ss_pred HHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHHHhcCCCC
Q 009816 192 VVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNP 258 (524)
Q Consensus 192 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~ 258 (524)
+++|++|.++|++++|+......+|.++||++++.+...+...+|++.+++.++.++ +..++||+.
T Consensus 672 ~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~l-l~~~LPET~ 737 (742)
T TIGR01299 672 LTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGL-LALKLPDTR 737 (742)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHhCCCCc
Confidence 999999999999999999999999999999999988766667788887776666544 445667754
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-12 Score=129.82 Aligned_cols=150 Identities=11% Similarity=-0.051 Sum_probs=110.5
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHH-HhccccccchhHHHHHHHHHHHHHhhhcchhh
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSL-YGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPS 188 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 188 (524)
.+.++..+...++..++.+++|+++||+|||+.+..+.++..++... .... ..++...+++.+++.|++.+.....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~g~ 362 (490)
T PRK10642 286 DHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI---NSNVIGLIFAGLLMLAVILNCFTGV 362 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778889999999999999999999999988877654433322 1111 0146777888899999887777777
Q ss_pred HHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh--cCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCC
Q 009816 189 VVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT--YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGT 263 (524)
Q Consensus 189 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (524)
...++.|.+|++.|+.++++......++..++|.+.+++.+ .+|+.+++...+++++. ++..+++||+|++..+
T Consensus 363 ~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~-~~~~~~~pes~~~~~~ 438 (490)
T PRK10642 363 MASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIG-LITGVTMKETANRPLK 438 (490)
T ss_pred HHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH-HHHHHHhccccCCCCC
Confidence 78888999999999999997555455666788888887763 35787777666655555 4445567999886543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=116.62 Aligned_cols=175 Identities=19% Similarity=0.243 Sum_probs=155.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHH
Q 009816 307 GVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYC 386 (524)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 386 (524)
.++.+.++.|......+.....+|...+| +|.|...+|...+.+..+..++.++...+.||+.||+.+.....++
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~d-----l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAAD-----LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 35567777888888889999999999999 5999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhh
Q 009816 387 AIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLT 466 (524)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~ 466 (524)
.++.++..+ .++++..++.=++.|+..+..++.......+.+|+ ++|+++.++...-..++.++|.+++
T Consensus 89 i~~n~l~al---Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp--------~~~~~Aiaiv~~G~tlA~v~GvPLG 157 (394)
T COG2814 89 IVSNLLSAL---APSFAVLLLARALAGLAHGVFWSIAAALAARLVPP--------GKRGRALALVFTGLTLATVLGVPLG 157 (394)
T ss_pred HHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--------cchhhHHHHHHHHHHHHHHHhccHH
Confidence 888877765 46788888888999999999999999999999984 6779999999999999999999999
Q ss_pred Hhhccc-ChhHHHHHHHHHHHHHHHHHHHHHH
Q 009816 467 GYISAT-SWTAVFTMLMAAALISGLLLTRLVV 497 (524)
Q Consensus 467 g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
.++-|. ||+.+|...+++.+++.+......+
T Consensus 158 t~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 158 TFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999 9999999999988887766654433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=121.33 Aligned_cols=169 Identities=14% Similarity=0.055 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 009816 309 APFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAI 388 (524)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 388 (524)
+......++.....+....+++.|+++. .|+++.+.|+..+...+...+.+++.|+++||++||+.+..+..+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~ 88 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQ----LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAA 88 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHH
Confidence 4455666777778888888899888776 799999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHh
Q 009816 389 PALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGY 468 (524)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~ 468 (524)
..+.... .++.+...+..++.|++.+...+...+.+.+..| ++.++++.|+.+....+|..+||.+.++
T Consensus 89 ~~~~~~~---~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~--------~~~~~~a~~~~~~~~~~g~~ig~~l~g~ 157 (400)
T PRK11646 89 GFATMAI---AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIR--------PHQRGRFFSLLMMQDSAGAVIGALLGSW 157 (400)
T ss_pred HHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666543 2455666666777787776666777777777776 3668999999999999999999999999
Q ss_pred hcccChhHHHHHHHHHHHHHHHHH
Q 009816 469 ISATSWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~ 492 (524)
+.+.+|+..|++.+...++..++.
T Consensus 158 l~~~g~~~~f~~~~~~~~~~~i~~ 181 (400)
T PRK11646 158 LLQYDFRLVCATGAVLFVLAAAFN 181 (400)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 986699999988877666554443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.3e-12 Score=125.47 Aligned_cols=178 Identities=13% Similarity=0.063 Sum_probs=138.2
Q ss_pred cCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhh-hhhhHHHHH
Q 009816 304 KIPG-VAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDR-LDARAITAA 381 (524)
Q Consensus 304 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~ 381 (524)
++|+ ++.+....++..+.+++...++|.|+++. +++|++..+++.+.+...++..++.+++|+++|| +|||+.+..
T Consensus 7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~--~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~ 84 (475)
T TIGR00924 7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQ--AGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL 84 (475)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence 3444 44455566666788899999999999762 1158999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhh
Q 009816 382 SFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAI 461 (524)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i 461 (524)
+..+.+++.+++.. ..+.+...+...+.|++.+...+.....+.+.+++++ ++.|+++.++.....++|..+
T Consensus 85 ~~~~~~~g~~~~~~---~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~-----~~~r~~~~~~~~~~~niG~~i 156 (475)
T TIGR00924 85 GGIVLMLGHFMLAM---SIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGD-----MPRRDGGFTLFYMSINIGSFI 156 (475)
T ss_pred HHHHHHHHHHHHHh---cccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCC-----cccccceehhHHHHHHHHHHH
Confidence 98888877666543 2334445556667788877777777788888776432 134677889999999999999
Q ss_pred hhhhhHhhccc-ChhHHHHHHHHHHHHHHHH
Q 009816 462 GPLLTGYISAT-SWTAVFTMLMAAALISGLL 491 (524)
Q Consensus 462 ~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~ 491 (524)
||.+.+++.+. +|+..|.+.++..+++.+.
T Consensus 157 g~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 157 SPLLAGVIAENYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 99999999987 9999998887655554333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-12 Score=124.33 Aligned_cols=145 Identities=16% Similarity=0.155 Sum_probs=115.7
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
+|+++ .+.+++.+...++..++.+++|+++||+|||+.+..+.+...+.......+ ++.+.+++.+++
T Consensus 247 ~~~~~-------~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l 314 (393)
T PRK15011 247 LHLPE-------KLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-----HSPAILLGLQLL 314 (393)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHH
Confidence 66665 788888888778888899999999999999998887766655555444444 677778889999
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh-cCchhHHHHhHHHHHHHHHHHHHhcCC
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT-YGWGWSFVVPGLIIAFVGLIVFLFLPV 256 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~ 256 (524)
.+++.+...+....+..|.+|+ +|++++++++....+|..++|.+++.+.+ +||+..|++.+++.++. ++..++.||
T Consensus 315 ~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ 392 (393)
T PRK15011 315 NAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIAT-LFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHhhcC
Confidence 8888777777777888998874 69999999999999999999999999884 69999999877666655 444445553
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.2e-12 Score=124.57 Aligned_cols=181 Identities=19% Similarity=0.145 Sum_probs=137.7
Q ss_pred hhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhh
Q 009816 297 VGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDAR 376 (524)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~ 376 (524)
.+++...+++.++...+..++..+........+|.+.++. +.++.+.|++.+...++..+++++.|+++||++||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~ 82 (417)
T PRK10489 8 LDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMM-----TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRK 82 (417)
T ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCc
Confidence 3445556788888888888888888777788899988875 77999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhh
Q 009816 377 AITAASFMYCAIPALFFYR--SYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGT 454 (524)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 454 (524)
+.+..+..+.+++...+.. .....+.+...+..++.|++.+...+.....+.+.++ ++.++++.++.+..
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 154 (417)
T PRK10489 83 KLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVG--------RENLMQAGAITMLT 154 (417)
T ss_pred eEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC--------HHHHHHHHHHHHHH
Confidence 9887766655554433321 1123345555566666777766666666677777665 36678999999999
Q ss_pred hhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHH
Q 009816 455 GSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGL 490 (524)
Q Consensus 455 ~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~ 490 (524)
..+|..+||.+.+.+.+. +|++.+++.++..+++.+
T Consensus 155 ~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T PRK10489 155 VRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLL 191 (417)
T ss_pred HhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999887 888888777665554443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.5e-12 Score=124.17 Aligned_cols=141 Identities=19% Similarity=0.212 Sum_probs=122.7
Q ss_pred hHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHH
Q 009816 111 LLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVV 190 (524)
Q Consensus 111 ~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 190 (524)
..+.+.+.+.++..++.+.+|++.||+|||+.+..+.++..++.+...+. ++.+.+++.+++.|++.+...+...
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~ 333 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-----QTPLQLGILRFLLGAADGALLPAVQ 333 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhhHhhHHHHH
Confidence 45667777888889999999999999999999999988888777777765 7788888999999999999999999
Q ss_pred HHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCC
Q 009816 191 AVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPV 256 (524)
Q Consensus 191 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 256 (524)
+++.+..|+++|++.+++......+|..+||.+++.+. .+||++.|++.+++.++..+..++..++
T Consensus 334 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 334 TLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred HHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988 5799999999988888776666655443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.7e-12 Score=124.03 Aligned_cols=137 Identities=17% Similarity=0.141 Sum_probs=117.6
Q ss_pred HhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHH
Q 009816 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVA 191 (524)
Q Consensus 112 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 191 (524)
.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++.... ++.+.+++.+++.|++.+...+....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~~~~~~~~~~ 325 (399)
T PRK05122 251 AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-----PSPWMALIGAALTGFGFSLVFPALGV 325 (399)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3556678888999999999999999999999999988888888777775 77788888999999999988888888
Q ss_pred HHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHh
Q 009816 192 VVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLF 253 (524)
Q Consensus 192 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~ 253 (524)
.+.|.+|+++|+++.+++.....+|..+++++.+.+. ..||++.|++.+++.++..+..++.
T Consensus 326 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 326 EAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999988888887 5799999999888777665544444
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-11 Score=119.19 Aligned_cols=174 Identities=19% Similarity=0.115 Sum_probs=122.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHH
Q 009816 305 IPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFM 384 (524)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~ 384 (524)
+|.+|.+....++..........++|.|+++. +|.++.+.+.+.+...++..+++++.|+++||+|||+.+..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~ 76 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDV----NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIIS 76 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 46788888888888888888889999999887 79999999999999999999999999999999999999876655
Q ss_pred HHHHHHHHHHHh--hcc---hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhh
Q 009816 385 YCAIPALFFYRS--YGH---LSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGA 459 (524)
Q Consensus 385 ~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 459 (524)
...+........ .+. .......+..++.|++.+...+.......+.. +.++...|.......+|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~g~ 146 (396)
T TIGR00882 77 GLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS----------RNSNFEYGKARMFGCVGW 146 (396)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh----------hhcccccchhhhhcccHH
Confidence 544333222111 010 11111222334455555555554444433321 112345566677788999
Q ss_pred hhhhhhhHhhcccChhHHHHHHHHHHHHHHHHH
Q 009816 460 AIGPLLTGYISATSWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 460 ~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 492 (524)
+++|.+.|.+.+.+|+..|++.+++.++..++.
T Consensus 147 ~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~ 179 (396)
T TIGR00882 147 ALCASIAGILFSIDPQIVFWLGSGFALILMLLL 179 (396)
T ss_pred HHHHHHHhhhhccCchHHHHHHHHHHHHHHHHH
Confidence 999999998887799999988877766655443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-11 Score=122.43 Aligned_cols=171 Identities=16% Similarity=0.146 Sum_probs=138.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHH
Q 009816 307 GVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYC 386 (524)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 386 (524)
.++...+..++..........++|.+.++ +|.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~ 85 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQS-----LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLF 85 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 45666777777777777888899999987 5999999999999999999999999999999999999988777666
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhh
Q 009816 387 AIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLT 466 (524)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~ 466 (524)
.++.+.... ..+.+..++..++.|++.+...+.....+.+.+| ++.++++.|+.+....+|..++|.+.
T Consensus 86 ~~~~~~~~~---~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 86 TLGSLFCAL---SGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVP--------REQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHHHHHH---hCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC--------HHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 665554432 2455666677788898888888888888888776 36679999999999999999999999
Q ss_pred Hhhccc-ChhHHHHHHHHHHHHHHHHHH
Q 009816 467 GYISAT-SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 467 g~l~~~-~~~~~~~~~~~~~~~~~~~~~ 493 (524)
|.+.+. +|++.|.+......++.+...
T Consensus 155 g~l~~~~gw~~~f~~~~~~~~l~~~~~~ 182 (471)
T PRK10504 155 GLLVEYASWHWIFLINIPVGIIGAIATL 182 (471)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 999887 999999887766665554443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-10 Score=108.55 Aligned_cols=313 Identities=16% Similarity=0.157 Sum_probs=201.6
Q ss_pred HHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhh
Q 009816 116 DLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGN 195 (524)
Q Consensus 116 ~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~ 195 (524)
.++-...+.+++++.+.+.|+.|.|+.++++......-.+..-+ .|-+.+++...+.|+|.+..+..--.++++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~------~N~y~~yfssallG~Gaallw~GqG~ylt~ 129 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF------PNSYYLYFSSALLGFGAALLWTGQGGYLTS 129 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh------cchHHHHHHHHHhhhhHHheecccceehhh
Confidence 57777888899999999999999999999999999888888877 788889999999999999999999999999
Q ss_pred ccccccccceehhhhhhhhhHHHHHHHHHHHhhhc---------Cch-hH-------HHHhHHHHHHHHH-----HHHHh
Q 009816 196 WFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTY---------GWG-WS-------FVVPGLIIAFVGL-----IVFLF 253 (524)
Q Consensus 196 ~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~---------gwr-~~-------f~~~~~~~~~~~~-----~~~~~ 253 (524)
..+++.+.+..++..+....+.++|..+-..+.+. +-+ .. +.+.-+..++..+ ....+
T Consensus 130 ~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~ 209 (461)
T KOG3098|consen 130 NSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDF 209 (461)
T ss_pred cCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheee
Confidence 99999999999999999999998887665544321 111 11 1111111111111 11111
Q ss_pred cCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 254 LPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYV 333 (524)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (524)
+|...... . . +. . +....+......+.+++|+...+....+..++.........|..+
T Consensus 210 ~p~~~~~~-~-~------~~---~-----------~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i 267 (461)
T KOG3098|consen 210 LPSKDVVN-C-K------SS---S-----------ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCI 267 (461)
T ss_pred cCccchhh-h-h------hh---c-----------cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 11110000 0 0 00 0 001112334456677888877776666665555555555555544
Q ss_pred hhcccCCCCC-ChhhhhhHHHHHHHHHHhhhHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHhhcc----------
Q 009816 334 SHTAVDGKYL-SSEMAGNLSTLFDVGGVLGGILAGHISDRL---DARAITAASFMYCAIPALFFYRSYGH---------- 399 (524)
Q Consensus 334 ~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~---~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 399 (524)
..... .+. +....+......+++.+++....+.+.+|. |++..+.++..+..+..++.....+.
T Consensus 268 ~ft~~--~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~ 345 (461)
T KOG3098|consen 268 SFTRK--LGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSP 345 (461)
T ss_pred hhhhh--ccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCccc
Confidence 33200 122 233344555667777888888888887765 56666666666665555555433221
Q ss_pred -----hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhH
Q 009816 400 -----LSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTG 467 (524)
Q Consensus 400 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g 467 (524)
++.....++.++.|++-+......+..+...++ +.+..+.++...-..++..++-....
T Consensus 346 ~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~---------~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 346 PLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP---------DDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred ccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc---------CchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 124566777888999999989899999988885 34456666666666666655554443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.2e-12 Score=125.05 Aligned_cols=143 Identities=24% Similarity=0.239 Sum_probs=116.8
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
.|+++ .+.+++.+.+.++..++.++.|++.||+|||+.+..+.+...++.++.... ++.+.+.+..++
T Consensus 250 ~g~s~-------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 317 (406)
T PRK11551 250 QGLSR-------SQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-----PSFAGMLLAGFA 317 (406)
T ss_pred CCCCh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHH
Confidence 56666 788999999999999999999999999999999888777766666666654 677777778888
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhc--CchhHHHHhHHHHHHHHHHHHH
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTY--GWGWSFVVPGLIIAFVGLIVFL 252 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~--gwr~~f~~~~~~~~~~~~~~~~ 252 (524)
.|++.+...+...+++.|.+|+++|++++++......+|..++|.+++.+.+. +|...++......++..+..+.
T Consensus 318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 89888778888899999999999999999999999999999999999998743 5666666655555444343333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-11 Score=120.69 Aligned_cols=171 Identities=13% Similarity=0.008 Sum_probs=135.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhh-hhhhHHHHHHHHH
Q 009816 307 GVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDR-LDARAITAASFMY 385 (524)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~ 385 (524)
.++..+...++..+.+++...+++.|+++. +|++..+++++...+.....+..+++|+++|| +|||+++..+.++
T Consensus 15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~----lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~ 90 (489)
T PRK10207 15 PFFMIFFVELWERFGYYGVQGILAVFFVKQ----LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV 90 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence 355566667777888999999999999887 89999999988888887777888899999999 9999999999998
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhh
Q 009816 386 CAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLL 465 (524)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 465 (524)
..++.+...... ......++...+.+++.+...+...+.+.+.+|+++ +.++.+.++.....++|..++|.+
T Consensus 91 ~~~g~~~~~~~~--~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~------~~~~~~~~~~~~~~nig~~~g~~l 162 (489)
T PRK10207 91 LAIGYFMTGMSL--LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD------PRLDGAFTLFYMSINIGSLISLSL 162 (489)
T ss_pred HHHHHHHHHHhc--cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc------hhhhcchhHHHHHHHHHHHHHHHH
Confidence 888876665421 112223355666788888888888888888887542 245667888999999999999999
Q ss_pred hHhhccc-ChhHHHHHHHHHHHHHH
Q 009816 466 TGYISAT-SWTAVFTMLMAAALISG 489 (524)
Q Consensus 466 ~g~l~~~-~~~~~~~~~~~~~~~~~ 489 (524)
.|++.+. ||++.|++.++..+++.
T Consensus 163 ~g~l~~~~gw~~~F~i~~i~~~~~~ 187 (489)
T PRK10207 163 APVIADKFGYSVTYNLCGAGLIIAL 187 (489)
T ss_pred HHHHHHhhChHHHHHHHHHHHHHHH
Confidence 9999988 99999988655444333
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.1e-11 Score=120.73 Aligned_cols=171 Identities=15% Similarity=0.104 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 009816 309 APFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAI 388 (524)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 388 (524)
..+++..++...-.......+|.+..+ +|.+..+.+++.+.+.++..++.++.|+++||+|||+.+..+..+..+
T Consensus 9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~-----l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 9 VIIVLVYIPVAIDATVLHVAAPTLSMT-----LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344555566666666777788988877 599999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHh
Q 009816 389 PALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGY 468 (524)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~ 468 (524)
+.+.... .++.+..++.-++.|++.+...+.....+.+.+++ ++.|+++.|+......+|..+||.+.|+
T Consensus 84 ~~~~~~~---a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~-------~~~r~~~~g~~~~~~~~g~~~gp~lgg~ 153 (495)
T PRK14995 84 ASLAAAF---SPTASWLIATRALLAIGAAMIVPATLAGIRATFTE-------EKQRNMALGVWAAVGSGGAAFGPLVGGI 153 (495)
T ss_pred HHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766654 35667777777888888877777666666666543 3678999999999999999999999999
Q ss_pred hccc-ChhHHHHHHHHHHHHHHHHHHH
Q 009816 469 ISAT-SWTAVFTMLMAAALISGLLLTR 494 (524)
Q Consensus 469 l~~~-~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
+.+. +|++.|++...+.++..++...
T Consensus 154 l~~~~gwr~~f~i~~~~~~~~~~l~~~ 180 (495)
T PRK14995 154 LLEHFYWGSVFLINVPIVLVVMGLTAR 180 (495)
T ss_pred hhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 9988 9999999887766665554443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=125.15 Aligned_cols=138 Identities=13% Similarity=0.151 Sum_probs=107.1
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
+|++. .+.+++.+.+.++..++.++.|+++||+|||+++..+.++..+..++.... ...+.+.+.+..++
T Consensus 306 ~g~~~-------~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 375 (496)
T PRK03893 306 LGYDP-------HTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI---GGANVWVLGLLLFF 375 (496)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc---cccHHHHHHHHHHH
Confidence 67666 899999999999999999999999999999999888877766655444332 01344445455555
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHH
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAF 245 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~ 245 (524)
.++......+....++.|.+|+++|++++++......+|..+||.+++.+. ++||+..+...+....+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 554434445667788999999999999999999999999999999999998 57899888665544433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-11 Score=117.52 Aligned_cols=170 Identities=16% Similarity=0.188 Sum_probs=135.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHH
Q 009816 306 PGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMY 385 (524)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 385 (524)
+.++.+....++...........+|.+.++ +|.+..+.++..+...++..+++++.|++.||+|||+.+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 77 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-----VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVAL 77 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHH-----cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH
Confidence 445566667777777777777888887776 599999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhh
Q 009816 386 CAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLL 465 (524)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 465 (524)
.+++.+.... .++.+..++..++.|++.+...+.....+.+..+ ++.++++.++......++..++|.+
T Consensus 78 ~~~~~~l~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~g~~l 146 (382)
T PRK10091 78 CVIGNAMFTL---SSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIK--------PGKVTAAVAGMVSGMTVANLLGIPL 146 (382)
T ss_pred HHHHHHHHHH---hCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC--------hHHhhHHHHHHHHHHHHHHHHhccH
Confidence 8777665543 3566777777788888877777666666666554 3557888999888889999999999
Q ss_pred hHhhccc-ChhHHHHHHHHHHHHHHHH
Q 009816 466 TGYISAT-SWTAVFTMLMAAALISGLL 491 (524)
Q Consensus 466 ~g~l~~~-~~~~~~~~~~~~~~~~~~~ 491 (524)
.+++.+. +|+..|.+.+++.++..+.
T Consensus 147 ~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 147 GTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 9998887 9999999888766554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-11 Score=117.14 Aligned_cols=167 Identities=14% Similarity=0.093 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 009816 309 APFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAI 388 (524)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 388 (524)
+...+..++...........+|.+.++ +|.|..+.+++.+...++..++.++.|++.||+|||+.+..+..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~g~~~~~i~~~-----~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 10 WISFLSYALTGALVIVTGMVMGPIAEY-----FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL 84 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444444444455566677777766 699999999999999999999999999999999999998888777766
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHh
Q 009816 389 PALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGY 468 (524)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~ 468 (524)
+.++... .++.+..++..++.|++.+...+.....+.+..+ ++.|+.+.+..+....+++.++|.+.+.
T Consensus 85 ~~~l~~~---~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~--------~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 153 (394)
T PRK03699 85 AVAGLMF---SHSLALFSIAMFVLGVVSGITMSIGTFLITHVYE--------GKQRGSRLLFTDSFFSMAGMIFPIIAAY 153 (394)
T ss_pred HHHHHHH---cchHHHHHHHHHHHHHhhHhhccchhHHhhhhcc--------cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655543 2455666667778888777777767777777765 3567888888888888999999999888
Q ss_pred hccc--ChhHHHHHHHHHHHHHHHH
Q 009816 469 ISAT--SWTAVFTMLMAAALISGLL 491 (524)
Q Consensus 469 l~~~--~~~~~~~~~~~~~~~~~~~ 491 (524)
+.+. +|+..|.+.+++.++..++
T Consensus 154 l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 154 LLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHH
Confidence 7653 8999998877766554433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-11 Score=118.39 Aligned_cols=158 Identities=22% Similarity=0.287 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 009816 320 LVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGH 399 (524)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (524)
.........+|.+.++ +|.++.+.+++.+...++..++.++.|++.||+|||+.+..+..+..++.+.... .
T Consensus 19 ~~~~~~~~~~p~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---~ 90 (385)
T TIGR00710 19 LGIDMYLPAFPEIAAD-----LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL---S 90 (385)
T ss_pred HHHHHhcccHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH---H
Confidence 3344444556766666 5999999999999999999999999999999999999998887777766665543 2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHH
Q 009816 400 LSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVF 478 (524)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~ 478 (524)
++.+...+..++.|++.+...+.....+.+..+ ++.|+++.++.+....+|..++|.+.+.+.+. +|+..+
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 162 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYP--------GEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIF 162 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 456666777788888888888888888888776 36689999999999999999999999998887 899999
Q ss_pred HHHHHHHHHHHHHHH
Q 009816 479 TMLMAAALISGLLLT 493 (524)
Q Consensus 479 ~~~~~~~~~~~~~~~ 493 (524)
++.+++.++..+...
T Consensus 163 ~~~~~~~~~~~~~~~ 177 (385)
T TIGR00710 163 AFLSLAGILLSALIF 177 (385)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777665555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-10 Score=114.54 Aligned_cols=165 Identities=19% Similarity=0.258 Sum_probs=121.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 009816 308 VAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCA 387 (524)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 387 (524)
++...+..+......+....++|.++++. +|+++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 78 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDD----LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLA 78 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHH----hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 45556666666666777778888766666 79999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHhhcch-hHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhh
Q 009816 388 IPALFFYRSYGHL-SLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLT 466 (524)
Q Consensus 388 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~ 466 (524)
++.+..... . +.+..++..++.|++.+ .+......+.+..+ ++.|+++.++......+|..+++.+.
T Consensus 79 i~~~~~~~~---~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~g~~~~~~i~ 146 (366)
T TIGR00886 79 IPCLWAGLA---VQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFP--------KKIQGTALGLAAGWGNMGGGVAQFVM 146 (366)
T ss_pred HHHHHHHHH---hhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcC--------HhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 776665432 3 55666666677777643 44555666666665 36678999998877778887777776
Q ss_pred Hhhcc----------c-ChhHHHHH-HHHHHHHH
Q 009816 467 GYISA----------T-SWTAVFTM-LMAAALIS 488 (524)
Q Consensus 467 g~l~~----------~-~~~~~~~~-~~~~~~~~ 488 (524)
+.+.. . +|++.|++ .+++..+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 180 (366)
T TIGR00886 147 PPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLP 180 (366)
T ss_pred HHHHHHHHhcccccccccccchhHHHHHHHHHHH
Confidence 65543 1 68888844 34443333
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-11 Score=117.58 Aligned_cols=151 Identities=12% Similarity=0.104 Sum_probs=121.7
Q ss_pred HHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 009816 326 LYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALN 405 (524)
Q Consensus 326 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (524)
...+|.+.++ +|.++.+.++..+...++..++.+..|++.||+|||+.+..+..+..++.+.... .++.+..
T Consensus 29 ~~~~~~l~~~-----~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---~~~~~~l 100 (390)
T PRK03545 29 VGLLSDIAQS-----FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL---AWNFTVL 100 (390)
T ss_pred HcchHHHHhH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH---hccHHHH
Confidence 3446766665 6999999999999999999999999999999999999999888777777655543 3456666
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHH
Q 009816 406 IALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAA 484 (524)
Q Consensus 406 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~ 484 (524)
++..++.|++.+...+.....+.+..+ ++.|+++.|+......+|..++|++.+.+.+. +|+..|++.+++
T Consensus 101 ~~~r~~~G~~~~~~~~~~~~~i~~~~~--------~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~ 172 (390)
T PRK03545 101 LISRIGIAFAHAIFWSITASLAIRVAP--------AGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGG 172 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC--------hhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHH
Confidence 677777888777777777777777776 36679999999999999999999999998887 999999998877
Q ss_pred HHHHHHHH
Q 009816 485 ALISGLLL 492 (524)
Q Consensus 485 ~~~~~~~~ 492 (524)
.++..+..
T Consensus 173 ~~l~~~~~ 180 (390)
T PRK03545 173 ALITLLLL 180 (390)
T ss_pred HHHHHHHH
Confidence 66554433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=121.72 Aligned_cols=138 Identities=17% Similarity=0.133 Sum_probs=119.8
Q ss_pred HhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHH
Q 009816 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVA 191 (524)
Q Consensus 112 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 191 (524)
.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~ 325 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-----PTAWVALAGAALTGAGCSLIFPALGV 325 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3556677888889999999999999999999999998888888887775 77888888999999999888888888
Q ss_pred HHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhc
Q 009816 192 VVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFL 254 (524)
Q Consensus 192 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~ 254 (524)
.+.+.+|+++|+++.++.+....+|..++|.+.+.+. +.||++.|.+.+++.++..++.++..
T Consensus 326 ~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 326 EVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999999988 57999999998887777655555443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-10 Score=114.95 Aligned_cols=150 Identities=15% Similarity=0.193 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhH
Q 009816 323 YTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSL 402 (524)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (524)
+.....+|.+.++ +|.++.+.++..+...++..+++++.|++.||+|||+.+..+..+.++..+.... .++.
T Consensus 37 ~~~~~~l~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~---~~~~ 108 (394)
T PRK10213 37 FLPVSLLTPMAQD-----LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF---ANSF 108 (394)
T ss_pred HHHHhhHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH---HChH
Confidence 3444467777666 6999999999999999999999999999999999999998888888776655543 3566
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHH
Q 009816 403 ALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTML 481 (524)
Q Consensus 403 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~ 481 (524)
+..++.-++.|++.+...+.....+.+.++ ++.++.+.++.....++|..++|.+.+++.+. +|+..|++.
T Consensus 109 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~--------~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 180 (394)
T PRK10213 109 SLLLIGRACLGLALGGFWAMSASLTMRLVP--------PRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAA 180 (394)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcC--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 777777788899988888888888888876 36689999999999999999999999999887 999999887
Q ss_pred HHHHHHH
Q 009816 482 MAAALIS 488 (524)
Q Consensus 482 ~~~~~~~ 488 (524)
+++.+++
T Consensus 181 ~~l~~~~ 187 (394)
T PRK10213 181 AVMGVLC 187 (394)
T ss_pred HHHHHHH
Confidence 7655443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-11 Score=119.50 Aligned_cols=157 Identities=20% Similarity=0.271 Sum_probs=116.8
Q ss_pred HHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc-chhHH
Q 009816 325 FLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYG-HLSLA 403 (524)
Q Consensus 325 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 403 (524)
+....| ++++ .|.++.+.++..+...++..++.++.|+++||++||+.+..+..+..++.+....... ..+..
T Consensus 46 ~~~~~p-~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (438)
T TIGR00712 46 FALAMP-YLVE-----QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIA 119 (438)
T ss_pred HHhhhH-HHHH-----cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHH
Confidence 344555 4444 4899999999999999999999999999999999999888777776666555432211 12344
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcc-c-ChhHHHHHH
Q 009816 404 LNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISA-T-SWTAVFTML 481 (524)
Q Consensus 404 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~-~~~~~~~~~ 481 (524)
...+..++.|++.+..++.....+.+.+|+ +.|++++|+.+....+++.+++.+.+...+ . +|+..|++.
T Consensus 120 ~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~--------~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~ 191 (438)
T TIGR00712 120 IMFVLLFLNGWFQGMGWPPCGRTMVHWWSQ--------SERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFP 191 (438)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHhcCc--------ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 445556677877777777777777777763 668999999999999999999988776544 3 899999998
Q ss_pred HHHHHHHHHHHHHH
Q 009816 482 MAAALISGLLLTRL 495 (524)
Q Consensus 482 ~~~~~~~~~~~~~~ 495 (524)
+++.++..++...+
T Consensus 192 ~~~~~i~~~~~~~~ 205 (438)
T TIGR00712 192 AICAIIVALFAFAM 205 (438)
T ss_pred HHHHHHHHHHHHHh
Confidence 88776655544433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.5e-11 Score=120.72 Aligned_cols=167 Identities=19% Similarity=0.172 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 009816 311 FALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPA 390 (524)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 390 (524)
+.+..++...........+|.+.++ +|.+..+.+++.+...++..++.++.|++.||+|||+.+..+..+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~p~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 7 LMLGTFMAVLDSTIVNVAIPTIAGD-----LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS 81 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 3444455555555666778887777 59999999999999999999999999999999999999988888777766
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhc
Q 009816 391 LFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYIS 470 (524)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 470 (524)
++... .++.+..++..++.|++.+...+.....+.+.+|+ +.|+++.++......+|..++|.+.+++.
T Consensus 82 ~~~~~---~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~--------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 82 LLCGV---APNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP--------EKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred HHHhC---cCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 65543 35667777788888998888888888888888873 67799999999999999999999999999
Q ss_pred cc-ChhHHHHHHHHHHHHHHHHHH
Q 009816 471 AT-SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 471 ~~-~~~~~~~~~~~~~~~~~~~~~ 493 (524)
+. +|++.|++.+.+.++..++..
T Consensus 151 ~~~~w~~~f~~~~~~~~~~~~~~~ 174 (485)
T TIGR00711 151 ENYHWRWIFLINVPIGIIVVVVAF 174 (485)
T ss_pred cCcCceehhhhhhHHHHHHHHHHH
Confidence 87 999999888776665554444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=121.79 Aligned_cols=162 Identities=25% Similarity=0.293 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009816 316 FFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYR 395 (524)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 395 (524)
++.......+....|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..++.++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 79 (379)
T TIGR00881 5 AAYYLVRKNFALAMPYLVEE-----IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF 79 (379)
T ss_pred hHHHHhHHhhhhhhHHHHHH-----hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH
Confidence 34444455556666765554 6999999999999999999999999999999999999998888877777666554
Q ss_pred hhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhh-hhHhhccc-C
Q 009816 396 SYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPL-LTGYISAT-S 473 (524)
Q Consensus 396 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~-~~g~l~~~-~ 473 (524)
. .+.+..++..++.|++.+...+.....+.+..++ +.|+++.++.+....+|..++|. +.+.+.+. +
T Consensus 80 ~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 148 (379)
T TIGR00881 80 S---TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSR--------SERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS 148 (379)
T ss_pred h---hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCH--------hhheeeEeehhccchhHHHHHHHHHHHHHHhcCC
Confidence 2 4566677777888888888888888888888773 56788899999999999999994 55555555 8
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 009816 474 WTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~ 493 (524)
|+..|++.+++.++..++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 149 WHWVFIVPGIIAIIVSLICF 168 (379)
T ss_pred chhHHHHHHHHHHHHHHHHh
Confidence 99888887776665544444
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.8e-11 Score=116.17 Aligned_cols=158 Identities=16% Similarity=0.075 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 009816 320 LVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGH 399 (524)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (524)
...+......|.+.++ +|.+..+.+++.+...++..+++++.|+++||+|||+.+..+..+..++.+.... .
T Consensus 17 ~~~~~~~~~~~~~~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~---~ 88 (377)
T TIGR00890 17 GYVYTWTLLAPPLGRY-----FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI---A 88 (377)
T ss_pred hHHhhhhhHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHH---H
Confidence 3344555667766665 6999999999999999999999999999999999999998888777776655543 2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHH
Q 009816 400 LSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVF 478 (524)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~ 478 (524)
++.+..++...+.|++.+..++.......+..+ +.|+++.++......+|..+++++.+.+.+. +|+..|
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f 159 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP---------DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAF 159 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC---------cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHH
Confidence 456666666667788777666666555555543 4478999999988889988877777766665 899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 009816 479 TMLMAAALISGLLLTR 494 (524)
Q Consensus 479 ~~~~~~~~~~~~~~~~ 494 (524)
.+.++..++..+....
T Consensus 160 ~~~~~~~~~~~~~~~~ 175 (377)
T TIGR00890 160 IYMGIIFLLVIVLGAF 175 (377)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888777665555443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-10 Score=115.14 Aligned_cols=165 Identities=12% Similarity=0.080 Sum_probs=121.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHH
Q 009816 307 GVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYC 386 (524)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 386 (524)
.+....++.++..........+++.++++ +|.++.+.++..+...++..+++++.|++.||++||+.+..+..+.
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~ 88 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKA-----LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLW 88 (402)
T ss_pred hhhHHHHHHHHHHHhhhhHHHhHHHHHHH-----hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 45556666677777766677788888876 5999999999999999999999999999999999999998888777
Q ss_pred HHHHHHHHHh-hcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhh-hhhhh
Q 009816 387 AIPALFFYRS-YGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGA-AIGPL 464 (524)
Q Consensus 387 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~i~~~ 464 (524)
.++.+..... ....+.+..+...++.|++.+...+.....+.+..+ +++|++++|+.+....+|. .++|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~--------~~~~g~~~g~~~~~~~~g~~~~g~~ 160 (402)
T TIGR00897 89 CVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTK--------QDNLSSAVGWFWAVYSIGIGVFGSY 160 (402)
T ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCC--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665433211 112344555555666677766655555556666655 3678999999999999986 57899
Q ss_pred hhHhhccc-ChhHHHHHHHHH
Q 009816 465 LTGYISAT-SWTAVFTMLMAA 484 (524)
Q Consensus 465 ~~g~l~~~-~~~~~~~~~~~~ 484 (524)
+.+++.+. +++..++.....
T Consensus 161 ~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 161 YSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred HHHhcccccchHHHHHHHHHH
Confidence 88888876 765555544433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=114.93 Aligned_cols=165 Identities=18% Similarity=0.234 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 009816 313 LCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALF 392 (524)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 392 (524)
+..+............+|.+.++ +|.+..+.++..+...++..++.++.|+++||+|||+.+..+.....++...
T Consensus 10 ~~~~~~~~~~~~~~~~lp~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPRIAAD-----LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33344444444555677777766 5999999999999999999999999999999999999988887777666655
Q ss_pred HHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 393 FYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
... ..+.+..++..++.|++.+...+.....+.+..+ ++.|+++.++.+....++..++|.+.+.+.+.
T Consensus 85 ~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~--------~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~ 153 (392)
T PRK10473 85 CSL---AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLD--------DRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK 153 (392)
T ss_pred HHH---hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 543 2345555666677788877777777778877776 36789999999999999999999999888766
Q ss_pred -ChhHHHHHHHHHHHHHHHHHH
Q 009816 473 -SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 473 -~~~~~~~~~~~~~~~~~~~~~ 493 (524)
+|+..+++.+++.++..++..
T Consensus 154 ~g~~~~~~~~~~~~~i~~~~~~ 175 (392)
T PRK10473 154 FPWQSLFYTMAAMGILVLLLSL 175 (392)
T ss_pred cChHHHHHHHHHHHHHHHHHHH
Confidence 899999888877666555543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=119.81 Aligned_cols=135 Identities=27% Similarity=0.374 Sum_probs=125.6
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchh-hHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhh
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRI-FLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPS 188 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~-~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 188 (524)
.+.++..+...++..++.++.|++.||+|||+ .+..+.++..++.++.... ++.+.+.+..++.|++.+...+.
T Consensus 211 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~ 285 (352)
T cd06174 211 AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-----PSLALLLVALLLLGFGLGFAFPA 285 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHhccchh
Confidence 88999999999999999999999999999999 9999999999999988886 77889999999999999999999
Q ss_pred HHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHH
Q 009816 189 VVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLI 249 (524)
Q Consensus 189 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~ 249 (524)
..+++.|..|+++|++.+++......+|..++|.+.+.+. ..+|+..|++.+++.++..+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347 (352)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 679999999988887776443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-11 Score=118.92 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchh
Q 009816 322 AYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLS 401 (524)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (524)
........|.+.++ +|.+..+.+++.+...++..++.++.|++.||+|||+.+..+..+..++....... .+
T Consensus 10 ~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---~~ 81 (399)
T TIGR00893 10 RANLSFAAPMLQED-----LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA---GA 81 (399)
T ss_pred HHhhhHhHHHHHHh-----hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH---cC
Confidence 34444555654444 69999999999999999999999999999999999999888877776666555432 36
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHH
Q 009816 402 LALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTM 480 (524)
Q Consensus 402 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~ 480 (524)
.+..++..++.|++.+...+.....+.+..|+ +.|+++.++.+....+|..++|.+.+.+.+. +|+..|++
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 153 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPA--------SERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII 153 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH--------HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 67777778888998888888888888888773 6789999999999999999999999988777 99999988
Q ss_pred HHHHHHHHHHHHH
Q 009816 481 LMAAALISGLLLT 493 (524)
Q Consensus 481 ~~~~~~~~~~~~~ 493 (524)
.+++.++..++..
T Consensus 154 ~~~~~~~~~~~~~ 166 (399)
T TIGR00893 154 EGVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHHHHhh
Confidence 8777665554443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-11 Score=124.41 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=116.2
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccch------hHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVH------SFYYY 171 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~------~~~~~ 171 (524)
+|++. .+.++......++..++.+++|+++||+|||+.+.++.++.+++.++.++......+ +...+
T Consensus 314 ~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (481)
T TIGR00879 314 AGVST-------DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAI 386 (481)
T ss_pred cCCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHH
Confidence 66655 677888889999999999999999999999999999988887777766521000011 33333
Q ss_pred HHHHHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHH
Q 009816 172 LVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIV 250 (524)
Q Consensus 172 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~ 250 (524)
....++.+.......+....++.|.+|+++|+.++++......+|.+++|.+.+.+. +.+|++.|++.++++++..++.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~ 466 (481)
T TIGR00879 387 VFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFV 466 (481)
T ss_pred HHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHH
Confidence 333333333323344666777899999999999999999999999999999988877 5799999999888888877776
Q ss_pred HHhcCCCC
Q 009816 251 FLFLPVNP 258 (524)
Q Consensus 251 ~~~~~~~~ 258 (524)
.++.||++
T Consensus 467 ~~~~~~~~ 474 (481)
T TIGR00879 467 YFFLPETK 474 (481)
T ss_pred heecccCC
Confidence 66666543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=115.99 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 009816 311 FALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPA 390 (524)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 390 (524)
..+..+...+.........|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+.+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 91 (405)
T TIGR00891 17 AWLGWLLDAFDFFLVALVLAEVAGE-----FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGT 91 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3344444444455555666666555 69999999999999999999999999999999999999988877777666
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhc
Q 009816 391 LFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYIS 470 (524)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 470 (524)
+.... .++.+..++..++.|++.+..++.....+.+..++ +.|+++.++.+....+|..+++.+.+.+.
T Consensus 92 ~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 92 LACGF---APGYITMFIARLVIGIGMGGEYGSSAAYVIESWPK--------HLRNKASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred HHHHH---hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCCh--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 24566667777888988888888888888888773 66799999999999999999999998887
Q ss_pred cc-C--hhHHHHHHHHHHHH
Q 009816 471 AT-S--WTAVFTMLMAAALI 487 (524)
Q Consensus 471 ~~-~--~~~~~~~~~~~~~~ 487 (524)
+. + |+..|.+.++..++
T Consensus 161 ~~~~~~w~~~f~~~~~~~~~ 180 (405)
T TIGR00891 161 PVWGDGWRALFFISILPIIF 180 (405)
T ss_pred HhcCccHHHHHHHHHHHHHH
Confidence 65 4 88888765544433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.6e-11 Score=117.76 Aligned_cols=156 Identities=21% Similarity=0.268 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchh
Q 009816 322 AYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLS 401 (524)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (524)
........|.+.++ +|.++.+.+++.+...++.+++.++.|+++||++||+.+..+..+..++.++... ..+
T Consensus 33 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~---~~~ 104 (398)
T TIGR00895 33 LAAMGFAAPAISAE-----WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL---ATN 104 (398)
T ss_pred HHHHHhhHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---ccc
Confidence 34444556666655 6999999999999999999999999999999999999988887777666555543 245
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHH
Q 009816 402 LALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTM 480 (524)
Q Consensus 402 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~ 480 (524)
.+..++..++.|++.+...+.....+.+..++ +.|+++.++.+....+|..+++.+.+++.+. +|+..+++
T Consensus 105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 176 (398)
T TIGR00895 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPK--------RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176 (398)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHcCH--------HhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence 56667777888988888888888888888763 6679999999999999999999999999887 89888888
Q ss_pred HHHHHHHHHHHHH
Q 009816 481 LMAAALISGLLLT 493 (524)
Q Consensus 481 ~~~~~~~~~~~~~ 493 (524)
.+++.++..++..
T Consensus 177 ~~~~~~~~~~~~~ 189 (398)
T TIGR00895 177 GGIAPLLLLLLLM 189 (398)
T ss_pred hhhHHHHHHHHHH
Confidence 7655554444433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-10 Score=113.05 Aligned_cols=168 Identities=13% Similarity=0.076 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 009816 309 APFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAI 388 (524)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 388 (524)
+.++...+...+........+|.+.++ +|.+..+.+++.+...++..++++..|++.||+|+|+.+..+..+.++
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~-----~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~ 80 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQA-----FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYAL 80 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 344444455555554555677776555 699999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHh
Q 009816 389 PALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGY 468 (524)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~ 468 (524)
+.++........+.+..++..++.|++.+...+.....+.+..+ ++.+++..++.+....+|..++|.+.+.
T Consensus 81 g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~lG~~~g~~i~~~ 152 (410)
T TIGR00885 81 GAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGP--------ESTATRRLNLAQSFNPFGSIIGMVVAQQ 152 (410)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCC--------HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665332223456667777888899888888877777777665 3557888999999999999999999887
Q ss_pred hccc---------------------------ChhHHHHHHHHHHHHHH
Q 009816 469 ISAT---------------------------SWTAVFTMLMAAALISG 489 (524)
Q Consensus 469 l~~~---------------------------~~~~~~~~~~~~~~~~~ 489 (524)
+... +|+.+|.+.+++.++..
T Consensus 153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 153 LILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred HHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7421 47888877777655443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-10 Score=114.58 Aligned_cols=157 Identities=20% Similarity=0.145 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcch
Q 009816 321 VAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHL 400 (524)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (524)
.........| .+++. +|++..+.+++.+...++..+++++.|++.||+|||+.+..+.++..++.+.... .+
T Consensus 23 d~~~~~~~~~-~l~~~----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~---~~ 94 (412)
T TIGR02332 23 DRINIGFAGL-TMGKD----LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMF---AT 94 (412)
T ss_pred hhhhHHHHHH-hhHhh----cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---hc
Confidence 3344444555 44444 7999999999999999999999999999999999999998888777776666543 24
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcc------c-C
Q 009816 401 SLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISA------T-S 473 (524)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~------~-~ 473 (524)
+.+..++.-++.|++.+...+.....+.+.+| ++.|+++.|+.+....+|..+++.+.+++.+ . +
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~--------~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g 166 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFP--------AYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKG 166 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence 56666777788899888888777777787777 3678999999999999999999999998863 2 8
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 009816 474 WTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~ 493 (524)
|+..|++.++..++..++..
T Consensus 167 wr~~f~~~~~~~l~~~~~~~ 186 (412)
T TIGR02332 167 WQWLFLLEGFPSVILGVMTW 186 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 99999988777665544443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-10 Score=112.74 Aligned_cols=168 Identities=17% Similarity=0.187 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHH-HHHHHH
Q 009816 313 LCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMY-CAIPAL 391 (524)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~-~~~~~~ 391 (524)
+..++...........+|.|+++. +|.++.+.+++.+...+...+.+++.|+++||+|||+.+...... ..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~ 79 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEE----VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACL 79 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence 445666667777788899998776 799999999999999999999999999999999998876554333 333333
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcc
Q 009816 392 FFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISA 471 (524)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 471 (524)
.... .++.+..++..++.|.+.+...+.......+..+++ .+.++...+.......+|..++|.+.+++.+
T Consensus 80 ~~~~---~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~ 150 (375)
T TIGR00899 80 LFAW---NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRT------GREAVMFSSVMRAQISLAWVIGPPLAFWLAL 150 (375)
T ss_pred HHHh---cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc------chhhHHHHHHHHHHHhHHHHHhhhHHHHHHH
Confidence 3322 234444444445555555555555545544444321 1222233677777788999999999999987
Q ss_pred c-ChhHHHHHHHHHHHHHHHHHH
Q 009816 472 T-SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 472 ~-~~~~~~~~~~~~~~~~~~~~~ 493 (524)
. +|+..|++.+.+.++..++..
T Consensus 151 ~~~~~~~f~~~~~~~~~~~~~~~ 173 (375)
T TIGR00899 151 GFGFTVMFLTAALAFVLCGVLVW 173 (375)
T ss_pred hcccHHHHHHHHHHHHHHHHHHH
Confidence 7 999999988877665555444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-10 Score=114.23 Aligned_cols=155 Identities=20% Similarity=0.239 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchh
Q 009816 322 AYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLS 401 (524)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (524)
.+.....+|.+.++ +|++..+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.++... ..+
T Consensus 52 ~~~~~~~~~~l~~~-----~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~---~~s 123 (476)
T PLN00028 52 TFAAAPLLPIIRDN-----LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSL---VSS 123 (476)
T ss_pred HHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH---hcC
Confidence 33444455556555 6999999999988899999999999999999999999888877766665554433 234
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcc----------
Q 009816 402 LALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISA---------- 471 (524)
Q Consensus 402 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~---------- 471 (524)
.+..++..++.|++.+.. ......+.+.++ ++.||++.|+.+....+|..+++.+.+.+.+
T Consensus 124 ~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~--------~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 194 (476)
T PLN00028 124 ATGFIAVRFFIGFSLATF-VSCQYWMSTMFN--------GKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF 194 (476)
T ss_pred HHHHHHHHHHHHHHHHhh-HHHHHHHHHhcC--------hhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 455555566677766543 334445666665 3677999999988878888877766654421
Q ss_pred cChhHHHHHHHHHHHHHHHHHH
Q 009816 472 TSWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~ 493 (524)
.+|+..|++.+++.++..++..
T Consensus 195 ~gWr~~f~i~g~l~l~~~l~~~ 216 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGILVL 216 (476)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 2799999988887766555444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-10 Score=114.15 Aligned_cols=161 Identities=23% Similarity=0.269 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHH--HhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 009816 317 FAKLVAYTFLYWLPFY--VSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFY 394 (524)
Q Consensus 317 ~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 394 (524)
.....+.....+.|.+ +++. +|.++.+.++..+...++..++.++.|+++||++||+.+..+..+..++.+...
T Consensus 14 ~~~~~~~~~~~~~p~~~~i~~~----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 89 (401)
T PRK11043 14 LSMLGFLATDMYLPAFKAIQAD----LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML 89 (401)
T ss_pred HHHHHHHHHHHHHhhHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 3334444444455544 3333 699999999999999999999999999999999999998888777666655544
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-C
Q 009816 395 RSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-S 473 (524)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~ 473 (524)
. ..+.+...+..++.|++.+...+.....+.+.+++ +.++...+..+....++..++|.+.+++.+. +
T Consensus 90 ~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g 158 (401)
T PRK11043 90 W---VESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA--------QKANRVFATIMPLVALSPALAPLLGAWLLNHFG 158 (401)
T ss_pred H---hcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3 24555666666777777666655555666666653 4567778888888889999999999999887 9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 009816 474 WTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~ 492 (524)
|+..|++.+++.++..+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~ 177 (401)
T PRK11043 159 WQAIFATLFAITLLLILPT 177 (401)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999988877666554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-11 Score=117.55 Aligned_cols=135 Identities=16% Similarity=0.022 Sum_probs=120.9
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
+|.++ .+.|++.+...++..+..++.+++.||+|+|+.+.++.++.++..++.+++ ++.+.+++.+++
T Consensus 235 ~g~s~-------~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~q~l 302 (382)
T TIGR00902 235 AGISA-------SATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-----EAFPLIFLLQIL 302 (382)
T ss_pred CCCCH-------hHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-----hhHHHHHHHHHH
Confidence 67776 889999999999999999999999999999999999999999999999886 999999999999
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhh-hhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHH
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWN-AHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFV 246 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~ 246 (524)
.|++.+...+....++.+. |+++|++..+++. ...++|..+||.++|.+. ++|+ ..|++.+++.++.
T Consensus 303 ~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T TIGR00902 303 HCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 9999999999999999998 8889999999986 577899999999999998 4575 6677777766654
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=111.40 Aligned_cols=180 Identities=13% Similarity=0.158 Sum_probs=144.1
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHH
Q 009816 300 IEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAIT 379 (524)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~ 379 (524)
.+++.+++...+.+...+..+......+++=-++++. +..+..-|......-.+.++.-++.+++.+|+|+.+++
T Consensus 365 ~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~-----~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~ 439 (618)
T KOG3762|consen 365 GKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDL-----GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVM 439 (618)
T ss_pred HHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhc-----CCcceeeeehhhhhccchHHHHHHHHHHHHHhccccee
Confidence 3667788887777777777777766777776667774 77777778777888888899999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhh-hhh
Q 009816 380 AASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTG-SVG 458 (524)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g 458 (524)
.++.....+-.+.+.. ..+.|..+.+-++-|+..+..+..+.+++....|+ +.++++.++..... .+|
T Consensus 440 ~lgLa~~~~Rf~~~S~---L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp--------~l~at~Q~l~~g~f~GlG 508 (618)
T KOG3762|consen 440 YLGLACNVGRFLYYSY---LQNPWMVLPIEILQGITHALIWAAIISYASHVAPP--------GLRATAQGLLQGIFHGLG 508 (618)
T ss_pred eehhhHHHHHHHHHHH---hcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCC--------cchHHHHHHHHHHhcccC
Confidence 8887777666655543 36778888889999999999999999999999885 66688888887654 789
Q ss_pred hhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHH
Q 009816 459 AAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRL 495 (524)
Q Consensus 459 ~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
-.+|.+++|.+.+. +-+..|.++++.+++.+++...+
T Consensus 509 ~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 509 KGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred cchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888 88888988888877766655443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=113.95 Aligned_cols=161 Identities=11% Similarity=0.102 Sum_probs=125.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHH
Q 009816 305 IPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFM 384 (524)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~ 384 (524)
+|.++.+.+..++..+.........+....+ ++.++.+.+++.+.+.+...+..++.|+++||++||+++..+..
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~ 76 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKE-----LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANG 76 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHH
Confidence 3567777777777777665555656666655 58888899999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhh
Q 009816 385 YCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPL 464 (524)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~ 464 (524)
+.+++.+..... .+. ++..++.|++.+...+...+.+.+.+|+ +.+++++|+.+....++..+||.
T Consensus 77 ~~~~~~~~~~~~---~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~--------~~~~~a~~~~~~~~~~~~~~Gp~ 142 (393)
T PRK11195 77 IKLLGCLLMLFG---IHP---LLAYGLVGIGAAAYSPAKYGILTELLPG--------EKLVKANGWMEGSTIAAILLGTV 142 (393)
T ss_pred HHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665544321 222 3445677888888889999999999884 67899999999999999999999
Q ss_pred hhHhhcccChhHHHHHHHHH
Q 009816 465 LTGYISATSWTAVFTMLMAA 484 (524)
Q Consensus 465 ~~g~l~~~~~~~~~~~~~~~ 484 (524)
++|++.+..+...+.+.+.+
T Consensus 143 lgG~l~~~~~~~~~~i~~~~ 162 (393)
T PRK11195 143 LGGALADPHAEAALAVCALI 162 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999887655555544433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-10 Score=112.80 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 009816 311 FALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPA 390 (524)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 390 (524)
..+..+.............|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~ 97 (426)
T PRK12307 23 AWLGYVFDGFDFMLIFYIMYLIKAD-----LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGT 97 (426)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 3333444444444555556655555 69999999999999999999999999999999999999998888887776
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhc
Q 009816 391 LFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYIS 470 (524)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 470 (524)
+.... ..+.+...+.-++.|++.+..++.....+.+..++ +.|+++.++......+|..+++.+.+.+.
T Consensus 98 ~~~~~---~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 98 GLSGL---ASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPK--------HLKSKASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred HHHHH---HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH--------hHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 65543 24566677777888988888888888888888773 66799999999999999999999988888
Q ss_pred cc-ChhHHHHHHH
Q 009816 471 AT-SWTAVFTMLM 482 (524)
Q Consensus 471 ~~-~~~~~~~~~~ 482 (524)
+. +|+..|++..
T Consensus 167 ~~~~w~~~f~i~~ 179 (426)
T PRK12307 167 EAYGWRAAFFVGL 179 (426)
T ss_pred ccCCHHHHHHHHH
Confidence 77 9999887643
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-10 Score=113.74 Aligned_cols=146 Identities=18% Similarity=0.223 Sum_probs=107.4
Q ss_pred CCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHhhhhhhh
Q 009816 342 YLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSY-GHLSLALNIALMFITGMFVNGPY 420 (524)
Q Consensus 342 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 420 (524)
|++..+.++..+...++..+++++.|+++||+|+|+.+..+.++.++..+...... ...+.+..++..++.|++.+..+
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999888877776666554321 11245555666677788877777
Q ss_pred HHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhh-hhhhhHhhc-ccChhHHHHHHHHHHHHHHHHHHHH
Q 009816 421 ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAI-GPLLTGYIS-ATSWTAVFTMLMAAALISGLLLTRL 495 (524)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i-~~~~~g~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
+.....+.+.++ ++.|+++.|+.+....+|+.+ +|.+...+. ..+|+..|++.+++.++..++..++
T Consensus 139 ~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~ 207 (452)
T PRK11273 139 PPCGRTMVHWWS--------QKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAM 207 (452)
T ss_pred hHHHHHHHHhCC--------hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 766667777665 367899999998888888755 444332232 2389999988877666654444433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.1e-10 Score=110.83 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=123.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHH
Q 009816 306 PGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMY 385 (524)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 385 (524)
+.++.+....++...........+|.+.++ +|.|..+.|++.+...++..+++++.|+++||+|||+.+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-----~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~ 80 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ-----EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLI 80 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777778888999999987 599999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhh
Q 009816 386 CAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLL 465 (524)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 465 (524)
..++...... .++.+..++..++.|++.+...+.....+.+..+ ++.|+++.+.......+|..+||.+
T Consensus 81 ~~~~~~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~g~~~ 149 (381)
T PRK03633 81 FAAGCAGLGL---MVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGT--------SRNRGRLLAAYMMVYYLGTVLGQLL 149 (381)
T ss_pred HHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776655443 2456666777788888877776666666665554 3567999999999999999999999
Q ss_pred hHhhccc
Q 009816 466 TGYISAT 472 (524)
Q Consensus 466 ~g~l~~~ 472 (524)
.+.+.+.
T Consensus 150 ~~~l~~~ 156 (381)
T PRK03633 150 VSKVSTE 156 (381)
T ss_pred Hhccccc
Confidence 9988765
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-11 Score=118.22 Aligned_cols=136 Identities=18% Similarity=0.101 Sum_probs=105.8
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHH--HHHhccccccchhHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFT--SLYGIGYWGNVHSFYYYLVVQ 175 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~r 175 (524)
+|+++ .+.+++.+...++..++.++.|+++||+|||+.+..+..+..+.. ++.... ..++.+.+.+..
T Consensus 250 ~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 319 (394)
T TIGR00883 250 LGLSA-------NSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL---DSGSFTLFFFLV 319 (394)
T ss_pred cCCCh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh---cCCchHHHHHHH
Confidence 56665 788899999999999999999999999999998775554443332 111121 024667777888
Q ss_pred HHHHHhhhcchhhHHHHHhhccccccccceehhh-hhhhhhHHHHHHHHHHHhh-hcC-chhHHHHhHHHH
Q 009816 176 MLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIW-NAHTSIGNITGSLVASALL-TYG-WGWSFVVPGLII 243 (524)
Q Consensus 176 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~ig~~l~~~l~-~~g-wr~~f~~~~~~~ 243 (524)
++.|++.+...+...+++.|.+|+++|+++.++. ..+..+|..++|.+++.+. +.| |++.++..++..
T Consensus 320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 320 LGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 8899988888899999999999999999999984 5666789999999999988 456 888777655433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-10 Score=112.02 Aligned_cols=154 Identities=16% Similarity=0.289 Sum_probs=124.6
Q ss_pred HHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 009816 324 TFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLA 403 (524)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (524)
.....+|.+.++ +|.++.+.+++.+...++..++.++.|++.||+|||+.+..+..+..++...... .++.+
T Consensus 9 ~~~p~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~---~~~~~ 80 (377)
T PRK11102 9 MYLPALPVIAAD-----FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL---AQTID 80 (377)
T ss_pred HHhccHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH---HccHH
Confidence 344667777776 5999999999999999999999999999999999999998888777776666543 24555
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHH
Q 009816 404 LNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLM 482 (524)
Q Consensus 404 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~ 482 (524)
...+..++.|++.+...+.....+.+..+ ++.|+++.++.+....+|..++|.+.+.+.+. +|+..|++.+
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 152 (377)
T PRK11102 81 QLIYMRFLHGLAAAAASVVINALMRDMFP--------KEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLA 152 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 66667778888887777777778877766 36689999999999999999999999999887 8999988887
Q ss_pred HHHHHHHHHHH
Q 009816 483 AAALISGLLLT 493 (524)
Q Consensus 483 ~~~~~~~~~~~ 493 (524)
++.++..++..
T Consensus 153 ~~~~~~~~~~~ 163 (377)
T PRK11102 153 LAAILAAALVF 163 (377)
T ss_pred HHHHHHHHHHH
Confidence 77666554443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=122.16 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=113.0
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccC--CchhhHHH--HHHHHHHHHHHHhccccccchhHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRL--DLRIFLTV--GMVGTGLFTSLYGIGYWGNVHSFYYYLV 173 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~--Grr~~l~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (524)
+|++. .+.+++.+...++..+++++.|+++||. ++|+...+ +.++.+++.++...+ ++++.+++
T Consensus 271 ~g~s~-------~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-----~~~~~~~i 338 (455)
T TIGR00892 271 KGVDE-------YEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-----GDYTGLVI 338 (455)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-----chHHHHHH
Confidence 56666 8899999999999999999999999984 34443333 334444445555554 78888899
Q ss_pred HHHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh-c-CchhHHHHhHHHHHHHHH
Q 009816 174 VQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT-Y-GWGWSFVVPGLIIAFVGL 248 (524)
Q Consensus 174 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~-gwr~~f~~~~~~~~~~~~ 248 (524)
.+++.|++.+...+...+++.|.+|++++++.++++.....+|..+||.+++.+.+ . +|++.|++.+++.++..+
T Consensus 339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998874 4 599999998876655433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.7e-10 Score=111.94 Aligned_cols=177 Identities=21% Similarity=0.196 Sum_probs=144.6
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHH
Q 009816 301 EAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITA 380 (524)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~ 380 (524)
..+|+|.+..+.+...+.+++......-++-++.+. .-|+...+++.....+..++.++++|.++||++||+.++
T Consensus 5 aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~l-----t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili 79 (524)
T PF05977_consen 5 APLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQL-----TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI 79 (524)
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 458899999999999999888888777777777664 678999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHH--hhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhh
Q 009816 381 ASFMYCAIPALFFYR--SYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVG 458 (524)
Q Consensus 381 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 458 (524)
.+-++.++....+.. .....+.+..++..++.|++.....+...+.+.+.+|. +....++++.+...++.
T Consensus 80 ~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~--------~~L~~A~al~s~~~nia 151 (524)
T PF05977_consen 80 LSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK--------EDLPAANALNSISFNIA 151 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--------hhHHHHHHHHHHHHHHH
Confidence 888776554443322 22344667778888889999888899999999999884 66788999999999999
Q ss_pred hhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHH
Q 009816 459 AAIGPLLTGYISAT-SWTAVFTMLMAAALISGL 490 (524)
Q Consensus 459 ~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~ 490 (524)
..+||.++|.+... |....|.+.++..++..+
T Consensus 152 r~iGPalgG~Lva~~G~~~~f~inalsfl~~i~ 184 (524)
T PF05977_consen 152 RIIGPALGGILVAFFGAAAAFLINALSFLISIL 184 (524)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887 777888777766555433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.2e-11 Score=119.90 Aligned_cols=144 Identities=15% Similarity=0.082 Sum_probs=106.8
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
+|++. .+.++..+...++..++.+++|+++||+|||+.+.....+..++..+..+. ..++.+.+.+.+++
T Consensus 289 ~g~s~-------~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 358 (467)
T PRK09556 289 LGFSK-------EDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ---HATSEYMYLASLFA 358 (467)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH---hcCcHHHHHHHHHH
Confidence 67776 888999999999999999999999999999988766554444333222221 01466667778888
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhhhhhhh-HHHHHHHHHHHhhh-------------cCchhHHHHhHHHH
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSI-GNITGSLVASALLT-------------YGWGWSFVVPGLII 243 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~ig~~l~~~l~~-------------~gwr~~f~~~~~~~ 243 (524)
.|++.............|.+|+++|+.+.|+......+ |..++|.+.|.+.+ .||+..|++.+++.
T Consensus 359 ~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~ 438 (467)
T PRK09556 359 LGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAA 438 (467)
T ss_pred HHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHH
Confidence 88654333333346677999999999999999988886 77899988888876 47999999887666
Q ss_pred HHHHHHHH
Q 009816 244 AFVGLIVF 251 (524)
Q Consensus 244 ~~~~~~~~ 251 (524)
++..+..+
T Consensus 439 ~~~~~~~~ 446 (467)
T PRK09556 439 IGCICLMA 446 (467)
T ss_pred HHHHHHHH
Confidence 66544333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.1e-10 Score=108.94 Aligned_cols=155 Identities=14% Similarity=0.009 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchh
Q 009816 322 AYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLS 401 (524)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (524)
...+...+|.+.++ +|.+..+.|++.+.+.++..++++..|+++||+|||+.+.......... ..... ...+
T Consensus 7 ~~~~~~~lp~i~~~-----~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~-~~~~~--~~~~ 78 (368)
T TIGR00903 7 WVTFSPVLSLVAED-----IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAA-AGRLL--DPFN 78 (368)
T ss_pred HHHHHhhHHHHHHH-----hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH-HHHHH--Hhcc
Confidence 34455667777776 6999999999999999999999999999999999888765443333332 22111 1135
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHH
Q 009816 402 LALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTM 480 (524)
Q Consensus 402 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~ 480 (524)
....++.-++.|++.+. .........+.+| ++.|+++.++.+....+|..+++.+.+++.+. +|+..|++
T Consensus 79 ~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~--------~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~ 149 (368)
T TIGR00903 79 YEWLLACQLLAALGQPF-LLNAFAPAASQIR--------EERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP 149 (368)
T ss_pred HHHHHHHHHHHHhHhHH-HHHHHHHHHHHcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 66777777788887764 3444455567666 37789999999999999999999999999877 99999999
Q ss_pred HHHHHHHHHHHHH
Q 009816 481 LMAAALISGLLLT 493 (524)
Q Consensus 481 ~~~~~~~~~~~~~ 493 (524)
.+++.++..++..
T Consensus 150 ~~~l~~~~~~~~~ 162 (368)
T TIGR00903 150 IAAVAAAGIILVL 162 (368)
T ss_pred HHHHHHHHHHHHH
Confidence 8877766655444
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-10 Score=110.13 Aligned_cols=157 Identities=14% Similarity=0.158 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 009816 319 KLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYG 398 (524)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (524)
..........+|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+.+..+.....++.+....
T Consensus 21 ~~~~~~~~p~~~~i~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~--- 92 (394)
T PRK11652 21 QMAQTIYVPAIADMARD-----LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF--- 92 (394)
T ss_pred HHHHHHHhccHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH---
Confidence 33334444556777766 5999999999999999999999999999999999999988887776666555443
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHH
Q 009816 399 HLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAV 477 (524)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~ 477 (524)
.++.+..++..++.|++.+...+.......+..+ .+.++.+.+..+....++..++|.+.+.+.+. +|+..
T Consensus 93 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~ 164 (394)
T PRK11652 93 AHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYE--------GTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRAC 164 (394)
T ss_pred HccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHH
Confidence 2455666666677777766555544444444443 35568888888888899999999999998887 99999
Q ss_pred HHHHHHHHHHHHHH
Q 009816 478 FTMLMAAALISGLL 491 (524)
Q Consensus 478 ~~~~~~~~~~~~~~ 491 (524)
|++.++..++..++
T Consensus 165 f~~~~~~~~~~~~~ 178 (394)
T PRK11652 165 YLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 98877665544433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-10 Score=110.68 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhH
Q 009816 323 YTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSL 402 (524)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (524)
..+...+|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+.+..+.....++.+.... .++.
T Consensus 30 ~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~---~~~~ 101 (406)
T PRK15402 30 DMIQPGMLAVVED-----FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILL---AQSI 101 (406)
T ss_pred hhHhcchHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH---HccH
Confidence 3344455655555 6999999999999999999999999999999999999988887777666655443 2455
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHH
Q 009816 403 ALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTML 481 (524)
Q Consensus 403 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~ 481 (524)
+..++..++.|++.+...+.....+.+.+++ +.+++..++......++..++|.+.+.+.+. +|+..|++.
T Consensus 102 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 102 EQFTLLRFLQGIGLCFIGAVGYAAIQESFEE--------ADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHhCh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 5566667777877776666677777777663 5567778888877888999999999998887 899999888
Q ss_pred HHHHHHHHHHH
Q 009816 482 MAAALISGLLL 492 (524)
Q Consensus 482 ~~~~~~~~~~~ 492 (524)
+++.+++.+..
T Consensus 174 ~~~~~~~~~~~ 184 (406)
T PRK15402 174 AALAALSFFGL 184 (406)
T ss_pred HHHHHHHHHHH
Confidence 77766654433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.9e-10 Score=109.61 Aligned_cols=147 Identities=16% Similarity=0.136 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhH
Q 009816 323 YTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSL 402 (524)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (524)
......+|...++ +|.|..+.++..+.+.++..++.++.|++.||+|||+++..+..+.+++.+.... .++.
T Consensus 26 ~~~~~~lp~i~~~-----~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~---a~~~ 97 (393)
T PRK09705 26 TSVGPLLPQLRQA-----SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL---YPQS 97 (393)
T ss_pred hccchhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH---Ccch
Confidence 4455677777766 6999999999999999999999999999999999999999999999888877764 3456
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHH
Q 009816 403 ALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTM 480 (524)
Q Consensus 403 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~ 480 (524)
+..++.-++.|++.+...+.....+.+.++ +.|+.++|+.......|..+++.+.+++.++ +|+..+.+
T Consensus 98 ~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 98 ALLLSSALLGGVGIGIIQAVMPSVIKRRFQ---------QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHHcc---------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 666777788888888877777776666553 4468999999988889999999999988776 78887766
Q ss_pred HHHHHH
Q 009816 481 LMAAAL 486 (524)
Q Consensus 481 ~~~~~~ 486 (524)
.++..+
T Consensus 169 ~~~~~~ 174 (393)
T PRK09705 169 WALPAV 174 (393)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=117.15 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=108.9
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhc-chhh
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQST-GWPS 188 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~-~~~~ 188 (524)
...++......+...++.+++|+++||+|||++++.+.++.+++.++.+........+. ......++.+++.+. ..|.
T Consensus 306 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 384 (479)
T PRK10077 306 DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-VALLSMLFYVAAFAMSWGPV 384 (479)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHhccccch
Confidence 44556666778888899999999999999999999999998888777654311111111 222333444444443 3467
Q ss_pred HHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-------hcCchhHHHHhHHHHHHHHHHHHHhcCCCC
Q 009816 189 VVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-------TYGWGWSFVVPGLIIAFVGLIVFLFLPVNP 258 (524)
Q Consensus 189 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~ 258 (524)
...++.|.+|+++|+.++|+......+|.++++.+.+.+. +++|++.|++.+++.++..++.+++.||++
T Consensus 385 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 385 CWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred hHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 7899999999999999999999999999988866655443 578999999988887777776666666653
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-09 Score=109.03 Aligned_cols=150 Identities=20% Similarity=0.205 Sum_probs=114.9
Q ss_pred HHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 009816 327 YWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNI 406 (524)
Q Consensus 327 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (524)
..+|...++ +|.+..+.++..+.+.++..++.++.|+++||+|||+.+..+..+..++.+.... .++.+..+
T Consensus 37 p~l~~i~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~---a~~~~~l~ 108 (413)
T PRK15403 37 PGIINVVRD-----FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF---TTSMTQFL 108 (413)
T ss_pred cCHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH---cCCHHHHH
Confidence 344444444 6999999999999999999999999999999999999998887777666655543 34566667
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHH
Q 009816 407 ALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAA 485 (524)
Q Consensus 407 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~ 485 (524)
+.-++.|++.+...+.......+.++ ++.++++.++.+....++..++|.+.+.+.+. +|+..|++.++..
T Consensus 109 ~~r~l~Gi~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~ 180 (413)
T PRK15403 109 IARFIQGTSICFIATVGYVTVQEAFG--------QTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMG 180 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77777787765544444455555555 35568889999999999999999999988877 9999999888776
Q ss_pred HHHHHHH
Q 009816 486 LISGLLL 492 (524)
Q Consensus 486 ~~~~~~~ 492 (524)
+++.+..
T Consensus 181 ~i~~~~~ 187 (413)
T PRK15403 181 LIAFVGL 187 (413)
T ss_pred HHHHHHH
Confidence 6655443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-08 Score=95.52 Aligned_cols=330 Identities=15% Similarity=0.135 Sum_probs=188.2
Q ss_pred HhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHH
Q 009816 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVA 191 (524)
Q Consensus 112 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 191 (524)
.+.+.-+-.+...+..+.+.++.+|+..+.=.....++..++.++.+++ ++.+.=+++-++.+++.|........
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~-----~~v~~~l~Gv~las~ssg~GE~tfL~ 135 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS-----PSVWVRLLGVVLASLSSGLGEVTFLS 135 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec-----cchhHHHHHHHHHhhhhhhhHHHHHH
Confidence 4667777778888888889999999886555566667788889999987 88888888999999999988877777
Q ss_pred HHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhc--CchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 009816 192 VVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTY--GWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEED 269 (524)
Q Consensus 192 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~--gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (524)
+ +..+++ ...+-+..+.+.+.++|+..-..+... +-|..+++...+.++..+..++.+|.++........+.+
T Consensus 136 l-t~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~ 210 (402)
T PF02487_consen 136 L-THFYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESE 210 (402)
T ss_pred H-HHhcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCC
Confidence 6 446653 357888888888888888776666544 457788888887777766666666654332211111110
Q ss_pred ccCCccccCCCcccccccchhhhhhhhhhHHHHhc-CCCcHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccCCCCCChhh
Q 009816 270 ESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWK-IPGVAPFALCLFFAKLVAYTFLY-WLPFYVSHTAVDGKYLSSEM 347 (524)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~ 347 (524)
... +++....+.+..+.+ ...+..+++-++ -+.....++-.++.++..+.++. ..|...-.. ...-...+
T Consensus 211 ~~~--~~~~~~~~~~~~~~~---~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~---~~~~~r~~ 282 (402)
T PF02487_consen 211 DEA--EDDLLESETSESKPD---SSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPN---SFFSPRDQ 282 (402)
T ss_pred Ccc--ccccccccccccccc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCc---cCCCHHHH
Confidence 000 000000000000000 001111111111 11222233334444455544432 233332211 01222344
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 009816 348 AGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAV 427 (524)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 427 (524)
..+....+.+|..+++--..++ |+.+.+.+.+...+..+..++-......++.|...+..+..|+..|..+......+
T Consensus 283 Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I 360 (402)
T PF02487_consen 283 YRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRI 360 (402)
T ss_pred HHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5556666777766665443222 33332332222222222222222222234567777778888999899998888888
Q ss_pred HhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhh
Q 009816 428 SADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYI 469 (524)
Q Consensus 428 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 469 (524)
.++.++ +.|-.++|.......+|..++..++-++
T Consensus 361 ~~~~~~--------~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 361 SEEVPP--------EDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HhcCCH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 877653 5667788888777777777666654433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-09 Score=101.89 Aligned_cols=347 Identities=12% Similarity=0.048 Sum_probs=175.0
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhccccc----CCchhhH-HHHHHHHHHHHHHHhcccc------cc------chhHHHHH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDR----LDLRIFL-TVGMVGTGLFTSLYGIGYW------GN------VHSFYYYL 172 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grr~~l-~~~~~~~~~~~~~~~~a~~------~~------~~~~~~~~ 172 (524)
.-.+.+--..-+...+.+++.|..+|| |||||.+ ..+.+..+++.++..++.. +. ......++
T Consensus 67 k~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~ 146 (498)
T KOG0637|consen 67 KWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFI 146 (498)
T ss_pred ccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHH
Confidence 444555555666677889999999995 7988764 4455666777777776511 00 01233444
Q ss_pred HHHHHHHHhhhcchhhHHHHHhhccccccccc-eehhhhhhhhhHHHHHHHHHHHhhhcCch--hHHHHhHHHHHHHHHH
Q 009816 173 VVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGL-IMGIWNAHTSIGNITGSLVASALLTYGWG--WSFVVPGLIIAFVGLI 249 (524)
Q Consensus 173 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~ig~~l~~~l~~~gwr--~~f~~~~~~~~~~~~~ 249 (524)
+.-.+.-++.-....++.+++.|...++++.+ +++.+....++|.++|..++.+. +|+ .+|.....+-+.+..+
T Consensus 147 lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~---~~~~~~~Ft~~~~~~~~C~~~ 223 (498)
T KOG0637|consen 147 LGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL---GLYKIFPFTLTTACDLYCANL 223 (498)
T ss_pred HHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc---CceEEeehHHHHHHHHHHHHH
Confidence 44445555666778888999999997766666 99999999999999999888754 333 2233322222222222
Q ss_pred HHHhcC-------CCCCCCCCCCccccccCC-ccccCCCcccccccchhhhhhhhhhHHHHhc-CCCcHHHHHHHHHHHH
Q 009816 250 VFLFLP-------VNPESVGTDTNEEDESLS-PKKIGEGVTQPLLRRETKIEEKAVGFIEAWK-IPGVAPFALCLFFAKL 320 (524)
Q Consensus 250 ~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 320 (524)
-..+.. ++-.. ....++++.... .+.+.+..+.+... .. +-.+.+ .+..+.+++...+.+.
T Consensus 224 ~~~~~~~v~L~~i~~~~~-l~~~~~~~~s~~~~~~~~~~~~~~~~~-------e~--fG~~~~mpr~m~~L~i~~lltW~ 293 (498)
T KOG0637|consen 224 KLCFFLEVTLLLIETSES-LWYPQEKPLSPKGTTARSKSSKLPFLL-------EI--FGALKVMPRPMRMLLIVTLLTWI 293 (498)
T ss_pred HHHHHHhhhhhheecccc-cccccccCCCCCcccccccccCcchHH-------HH--hchHhhCChhHHHHHHHHHHHHH
Confidence 111111 11000 000000000000 00000000000000 00 111222 2456777888888888
Q ss_pred HHHHHHHHHHHHHhhccc--CCCCCCh-----------hhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 009816 321 VAYTFLYWLPFYVSHTAV--DGKYLSS-----------EMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCA 387 (524)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~--~~~g~~~-----------~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 387 (524)
+.+.+..+...++.+... ++.+-+. ..-.+=+.++.+...+.+.+..++.+|+|-|+.+..+.....
T Consensus 294 a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~ 373 (498)
T KOG0637|consen 294 AWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFG 373 (498)
T ss_pred HHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHH
Confidence 888877777777655432 1111110 111233455666667778888999999995554433333222
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhh--c---------c---cc-cCCCCccchhHHHHHHH
Q 009816 388 IPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADL--G---------T---HS-SLKGNSRALATVTAIID 452 (524)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~---------~---~~-~~~~~~~~~g~~~g~~~ 452 (524)
++..+... ..+.+....-....|+..+......+......- + + .+ +.....+..|...|+.+
T Consensus 374 ~~~~~~gl---~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln 450 (498)
T KOG0637|consen 374 LATGLAGL---VLNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLN 450 (498)
T ss_pred HHHHHHhh---hhhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCccccccccccccccccccCccCCCCceeeeee
Confidence 22211111 112222222222333222222221111111100 0 0 00 00111233467777888
Q ss_pred hhhhhhhhhhhhhhHhhccc
Q 009816 453 GTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 453 ~~~~~g~~i~~~~~g~l~~~ 472 (524)
..-.+..++.....|.+.+.
T Consensus 451 ~~I~ipQvivs~~~Gp~~~~ 470 (498)
T KOG0637|consen 451 CAIVIPQVLVSLGLGPLDQL 470 (498)
T ss_pred eeeeehhheeeccccchhhh
Confidence 77788888888777877776
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-09 Score=105.72 Aligned_cols=175 Identities=15% Similarity=0.118 Sum_probs=118.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHH
Q 009816 307 GVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYC 386 (524)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 386 (524)
.++...+..+......+......+.+-+.. +|++..+.+++.++..++..+.++..|++.||+|.|+.+.++.++.
T Consensus 35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~----~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~ 110 (462)
T PRK15034 35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIG----FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAIL 110 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 344333333333333333333344444433 7999999999999999999999999999999999999998888887
Q ss_pred HHHHHHHHHhh--cchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhh
Q 009816 387 AIPALFFYRSY--GHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPL 464 (524)
Q Consensus 387 ~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~ 464 (524)
.+..+...... ..++.+..++.-++.|++ +..++.....+.+.+| ++.+|++.|+....+++|..+++.
T Consensus 111 ~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp--------~~~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 111 IIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFP--------KAKQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCC--------HhHhHHHHHHHHHHHhhHHHHHHH
Confidence 77666554321 124667777788888886 6677888888888887 366899999997667777766555
Q ss_pred hhHhhc-----c-------------c-ChhHHHHHHHHHHHHHHHHHHH
Q 009816 465 LTGYIS-----A-------------T-SWTAVFTMLMAAALISGLLLTR 494 (524)
Q Consensus 465 ~~g~l~-----~-------------~-~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
+...+. + . +++.+.++...+.++..++.++
T Consensus 182 l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 182 VAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred HHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544322 1 1 3566666666655555444443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-09 Score=98.54 Aligned_cols=184 Identities=17% Similarity=0.135 Sum_probs=138.2
Q ss_pred hhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHH
Q 009816 36 QAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGEL 115 (524)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~ 115 (524)
||..+....... ......+.++...|.+++. +|++. +|...+
T Consensus 1 rW~~l~a~~~v~-~~~Gt~Y~Fs~yS~~Lk~~------------------------------l~~sq-------~~l~~l 42 (250)
T PF06813_consen 1 RWLSLVASIWVQ-LCSGTTYTFSAYSPQLKSR------------------------------LGYSQ-------SQLNTL 42 (250)
T ss_pred ChhhHHHHHHHH-HhcCcccchhhhhHHHHHH------------------------------hCCCH-------HHHHHH
Confidence 466554444433 3444677788888888877 78777 999999
Q ss_pred HHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccc--hhHHHHHHHHHHHHHhhhcchhhHHHHH
Q 009816 116 DLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNV--HSFYYYLVVQMLAGLFQSTGWPSVVAVV 193 (524)
Q Consensus 116 ~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~i 193 (524)
.++..+|..+ +++.|.+.|++|++.++.+|.+...+|..+...+..... .++|.+.+..++.|.+.+....++....
T Consensus 43 ~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~ 121 (250)
T PF06813_consen 43 STAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTC 121 (250)
T ss_pred HHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHH
Confidence 9999999886 589999999999999999999999999988877543322 4788888888999888877777777777
Q ss_pred hhccccccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHHHhcCCCCC
Q 009816 194 GNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNPE 259 (524)
Q Consensus 194 ~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~ 259 (524)
.+.|| ++||.+.|+.-...+++..+-..+...+.+-+-...+++.+....+..++..++++..|+
T Consensus 122 ~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~ 186 (250)
T PF06813_consen 122 VRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVPP 186 (250)
T ss_pred HHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccCC
Confidence 78897 589999999999999998887766666653343344455565555555555556655443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.4e-09 Score=100.63 Aligned_cols=153 Identities=8% Similarity=0.057 Sum_probs=121.0
Q ss_pred HHHHHHHhhcccCCCCCChhh-hhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 009816 327 YWLPFYVSHTAVDGKYLSSEM-AGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALN 405 (524)
Q Consensus 327 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (524)
.+...++.+. +|++..+ .|.+...+..+..+..+++|+++||+|.|+.+..+.+...+..++..+ ..+...+
T Consensus 46 s~a~p~L~~e----lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f---a~Sl~~L 118 (511)
T TIGR00806 46 SFITPYLLTV----LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL---GTSVWHM 118 (511)
T ss_pred HHHHHHHHHH----cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3334455544 7999999 999999999999999999999999999999999888888777766654 3467777
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcccChhH---HHHHHH
Q 009816 406 IALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTA---VFTMLM 482 (524)
Q Consensus 406 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~---~~~~~~ 482 (524)
.+.-++.|++-+..+ ....++...+| ++.|+++.|+.+....+|.++++++.+++...+|+. ..++..
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP--------~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl 189 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVP--------PSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISL 189 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 888899999999988 88888888888 477899999999999999999999999965545554 333444
Q ss_pred HHHHHHHHHHHHH
Q 009816 483 AAALISGLLLTRL 495 (524)
Q Consensus 483 ~~~~~~~~~~~~~ 495 (524)
+...++.++.+++
T Consensus 190 ~s~~~a~~~a~~L 202 (511)
T TIGR00806 190 VFMTFSVFLALFL 202 (511)
T ss_pred HHHHHHHHHHHhC
Confidence 4444444444443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-09 Score=106.49 Aligned_cols=148 Identities=18% Similarity=0.157 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 009816 309 APFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAI 388 (524)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 388 (524)
..+.+..+...+.........|.+. +. +|.++.+.++..+.+.++..++.++.|++.||+|||+.+..+..+..+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i~-~~----~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQFQ-QA----FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HH----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3444555555666666777788874 44 799999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHh
Q 009816 389 PALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGY 468 (524)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~ 468 (524)
+.++.......++.+..++..++.|++.+.........+.+. ++ ++.++...++.+....+|..++|.+.+.
T Consensus 104 ~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~-~~-------~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL-GP-------ESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-CC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776543222245677777888889999888888888877654 33 2334456888888889999999988765
Q ss_pred h
Q 009816 469 I 469 (524)
Q Consensus 469 l 469 (524)
+
T Consensus 176 l 176 (438)
T PRK10133 176 L 176 (438)
T ss_pred H
Confidence 4
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=102.96 Aligned_cols=167 Identities=19% Similarity=0.224 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009816 316 FFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYR 395 (524)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 395 (524)
+..++..+....-+-..+.+. +|+|+.|.+++.++..+.+.+.++..|.+.||+|.|++...+.++..+..+.+..
T Consensus 23 f~v~F~VW~l~s~l~~~i~~~----~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~ 98 (417)
T COG2223 23 FDVGFMVWTLFSPLGVFIKSD----FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAF 98 (417)
T ss_pred HHHHHHHHHHHHHHHhhhccc----cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444454 8999999999999999999999999999999999999999999998888887776
Q ss_pred hhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-C-
Q 009816 396 SYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-S- 473 (524)
Q Consensus 396 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~- 473 (524)
.....+.+..+++-++.|++ ++.+......++..+|+ +..|.+.|+.. .+++|..+...+..++... +
T Consensus 99 a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~--------~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~ 168 (417)
T COG2223 99 AVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPK--------EKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGF 168 (417)
T ss_pred HccCCchHHHHHHHHHHhcc-cceehcccccccccCCh--------hhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhh
Confidence 55555556667777777765 55566777788888874 67799999999 8999999988888888776 6
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHH
Q 009816 474 --WTAVFTMLMAAALISGLLLTRLV 496 (524)
Q Consensus 474 --~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
|+.+..+.....++..+..++..
T Consensus 169 ~~w~~~~~i~~~~l~v~~v~~~~~~ 193 (417)
T COG2223 169 LAWRNVAGIYVVALAIAAVLAWLGM 193 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777776666655555443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.3e-08 Score=93.16 Aligned_cols=334 Identities=13% Similarity=0.064 Sum_probs=187.5
Q ss_pred HHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhcc----ccccc------hhHHHHHHHHHHHHHhhhcc-h
Q 009816 118 AFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIG----YWGNV------HSFYYYLVVQMLAGLFQSTG-W 186 (524)
Q Consensus 118 ~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a----~~~~~------~~~~~~~~~r~l~G~~~~~~-~ 186 (524)
.-.+...+.++..|.+.||..|.++...+++.--++..+++.. ..... .....+++.-.+.|.-.-.. .
T Consensus 46 ~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~ 125 (432)
T PF06963_consen 46 VRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASI 125 (432)
T ss_pred HHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 4445667788899999999999998877766643333322221 00000 11222222222333221111 2
Q ss_pred hhHHHHHhhcc------ccccccceehhhhhhhhhHHHHHHHHHHHhhh-cCchhHHHHhHHHHHHHHHHHHHhcC----
Q 009816 187 PSVVAVVGNWF------GKSKRGLIMGIWNAHTSIGNITGSLVASALLT-YGWGWSFVVPGLIIAFVGLIVFLFLP---- 255 (524)
Q Consensus 187 ~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~---- 255 (524)
....++=.||. +++.+.+.++.+.-.-.+.-+++|++.|.+.. .+.+....+.++..++...+-++++.
T Consensus 126 ~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~ 205 (432)
T PF06963_consen 126 ANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYN 205 (432)
T ss_pred hhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222335553 34456677777777778889999999999985 78888877777777776555444432
Q ss_pred CCCCCCCCCCccccccCCccc-cCCCccc-cccc-chhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 256 VNPESVGTDTNEEDESLSPKK-IGEGVTQ-PLLR-RETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFY 332 (524)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (524)
..|+-..+++..+++.....+ ..+.... ...+ ..+..++...+|+..+++|.+... ++..+.++...++...+..|
T Consensus 206 ~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas-~alalLY~TVLsf~~lmt~y 284 (432)
T PF06963_consen 206 SVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLAS-FALALLYFTVLSFGGLMTAY 284 (432)
T ss_pred hChHhcCCCCCccccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHH-HHHHHHHHHHhcCcHHHHHH
Confidence 222211111111111110000 0000000 0000 011112233456667777755443 44444444455566778888
Q ss_pred HhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHhhcch----hHHHH
Q 009816 333 VSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALF---FYRSYGHL----SLALN 405 (524)
Q Consensus 333 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~ 405 (524)
+... |+++...|..-....+.++.+.++..++.+|+|..|.-.++...-..+..+ ..+....+ +...+
T Consensus 285 l~~~-----G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l 359 (432)
T PF06963_consen 285 LKSQ-----GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLL 359 (432)
T ss_pred HHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHH
Confidence 8885 999999999999999999999999999999999988766655433322221 12211211 22333
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhh
Q 009816 406 IALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLL 465 (524)
Q Consensus 406 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 465 (524)
+....+.-++.-+.-......+++.+| ++.||+..|+-+..+++...+.-.+
T Consensus 360 ~~gi~~SR~GLW~fDL~~~qi~Qe~V~--------~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 360 LGGIALSRIGLWSFDLAVTQIMQENVP--------ESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhcccCC--------HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455566666666 3678999999998888877665444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-10 Score=110.45 Aligned_cols=175 Identities=17% Similarity=0.153 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 009816 311 FALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPA 390 (524)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 390 (524)
..+...+.+..++.=-+.+|-.+.+. .+-+|.++...|++...+.+...+.+++.|++.||++|++++.++..+-.++.
T Consensus 34 ~l~il~~vnlmny~Dr~~iagv~~~v-~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av 112 (493)
T KOG1330|consen 34 TLVILCLVNLMNYADRYTIAGVLKEV-QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAV 112 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHH-HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHH
Confidence 33334444444444334444333322 11279999999999999999999999999999999999999999988887777
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhc
Q 009816 391 LFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYIS 470 (524)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 470 (524)
+...+. ...|.+.++-.+.|++-+...+..++.+++.++. ..|+++.++.+....+|..+|-...+.+.
T Consensus 113 ~~~~fs---~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~--------~~Rs~~~~ify~~ipvGsglG~vvgs~va 181 (493)
T KOG1330|consen 113 FASGFS---NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD--------DKRSRVLGIFYFAIPVGSGLGYVVGSVVA 181 (493)
T ss_pred HHHHHH---HHHHHHHHHHHHhccchhhhcccchhHhhhcCcc--------hhhhHHHHHhhhhcccccceeEEeeeeec
Confidence 666542 6678888888899999999999999999999884 67899999999999999999999988888
Q ss_pred cc--ChhHHHHHHHHHHHHHHHHHHHHHH
Q 009816 471 AT--SWTAVFTMLMAAALISGLLLTRLVV 497 (524)
Q Consensus 471 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
+. .|++.|...+++.++..++..++.+
T Consensus 182 ~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 182 SLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred cCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 77 5999999999998887777765544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.6e-10 Score=110.50 Aligned_cols=145 Identities=17% Similarity=0.123 Sum_probs=102.1
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
.+...+.....+...++.+++|+++||+|||++++.+.++..++.+...... ...++.+.+++..++.|++.+...+..
T Consensus 286 ~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 364 (438)
T PRK09952 286 ELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL-EAQSIFWIVFFSIMLANIAHDMVVCVQ 364 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556666778889999999999999998888766555443332210 001344455556677788888888888
Q ss_pred HHHHhhccccccccceehhhhh-hhhhHHHHHHHHHHHhhh-c--CchhHHHHhHHHHHHHHHHHHHhcCC
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNA-HTSIGNITGSLVASALLT-Y--GWGWSFVVPGLIIAFVGLIVFLFLPV 256 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~ig~~l~~~l~~-~--gwr~~f~~~~~~~~~~~~~~~~~~~~ 256 (524)
.++++|.+|.+.|+.+.++... +..+|..++|.+.+++.+ . +|+..+...+++.++..+. .+.++|
T Consensus 365 ~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~-~~~~~~ 434 (438)
T PRK09952 365 QPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT-ALLMKD 434 (438)
T ss_pred HHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHccc
Confidence 9999999999999888888544 455889999999998864 2 4888888777666655444 344554
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=103.94 Aligned_cols=188 Identities=15% Similarity=0.125 Sum_probs=150.8
Q ss_pred HhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhh-hhhHHH
Q 009816 302 AWKIPG-VAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRL-DARAIT 379 (524)
Q Consensus 302 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~ 379 (524)
.+++|+ ++.+...-+.-.+.+|++...+..|+.....+++|++..++.-++..+..-.-+..+++||++||+ |+|+++
T Consensus 16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI 95 (498)
T COG3104 16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI 95 (498)
T ss_pred cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 344444 455666667788999999999999999885444669999998888888877778899999999996 999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhh
Q 009816 380 AASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGA 459 (524)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 459 (524)
..+.++.+++.+++.... ........+.+.+++++.+..-+...+.+.+.+++.+. | |-...++..+.-++|+
T Consensus 96 ~lGail~~iGh~~L~~~~-~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp-----r-rD~gFt~fY~~iNiGs 168 (498)
T COG3104 96 VLGAILMAIGHLVLAISS-VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP-----R-RDGGFTLFYMGINIGS 168 (498)
T ss_pred HHHHHHHHHHHHHHhccc-cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc-----c-cCCCccEEEEEeehHH
Confidence 999999999988876531 12345567777778899999989999999999886542 3 5566788888889999
Q ss_pred hhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHHH
Q 009816 460 AIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRLV 496 (524)
Q Consensus 460 ~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
.++|.+.+++.+. +|...|...++.+.++.+.....+
T Consensus 169 l~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 169 LIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999998 999999999888887776665443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=107.26 Aligned_cols=134 Identities=15% Similarity=0.067 Sum_probs=112.1
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
.|+++ .+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+.+ ++.+.+++..++
T Consensus 235 ~g~s~-------~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l 302 (382)
T PRK11128 235 AGYSA-------STIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-----TALPWLIVIQIL 302 (382)
T ss_pred CCCCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHH
Confidence 56665 788999999999999999999999999999999999999988888877775 889999999999
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhh-hhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHH
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWN-AHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAF 245 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~ 245 (524)
.|++.+...+....++.+. +++++++..+... ....+|..+||.++|.+. .+|+ ..|+..+++.++
T Consensus 303 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 303 HCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 9999998889999988886 5666788888876 556788899999999998 4576 466666655543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-09 Score=110.60 Aligned_cols=137 Identities=17% Similarity=0.189 Sum_probs=108.3
Q ss_pred HHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhc
Q 009816 117 LAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNW 196 (524)
Q Consensus 117 s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~ 196 (524)
....+....+.++.+++.||+|||+.+.++.++.+++.++..+.. ..+.+...+.-++.+++.+..++....+..|.
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP---VDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445566778888999999999999999999998888887777641 11224455556667777777788889999999
Q ss_pred cccccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHHHhcCCCC
Q 009816 197 FGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLPVNP 258 (524)
Q Consensus 197 ~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~ 258 (524)
+|.+.|+.++|+......+|.+++|.+.+ +...++..++++.+++.++.+++ .+++||+.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGIL-TLFLPETK 498 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHH-HHcCcCCC
Confidence 99999999999999999999999999998 66667788888888777776554 45677654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.5e-09 Score=102.66 Aligned_cols=163 Identities=13% Similarity=0.037 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhh-----hhhH-HHHHHHHHH
Q 009816 313 LCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRL-----DARA-ITAASFMYC 386 (524)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----~~~~-~~~~~~~~~ 386 (524)
..++............+|.|+++. |+|.++.|++...... .+..++.|+++||+ |||| .+..+....
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~~-----g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~ 78 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTVE-----GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGL 78 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHH
Confidence 334455566667778899999995 9999999998666554 57889999999999 7776 566666666
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhh
Q 009816 387 AIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLT 466 (524)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~ 466 (524)
+++...+....+..+.+......++.+++.....+...+.+.+..+ +++|+++.++......+|..+++.+.
T Consensus 79 ~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~--------~~~r~~~~~~~~~g~~~g~i~g~~l~ 150 (402)
T PRK11902 79 AASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLH--------PEERGAGAAVKVLGYRLAMLVSGGLA 150 (402)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------hhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 5555554443233345555555556676666677777788888776 36679999999988899999999999
Q ss_pred Hhhccc--ChhHHHHHHHHHHHHHHH
Q 009816 467 GYISAT--SWTAVFTMLMAAALISGL 490 (524)
Q Consensus 467 g~l~~~--~~~~~~~~~~~~~~~~~~ 490 (524)
+++.+. +|+..|++.+++.++..+
T Consensus 151 ~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 151 LWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 988884 899999988877655443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-08 Score=103.41 Aligned_cols=177 Identities=12% Similarity=0.021 Sum_probs=130.8
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhh-----hh
Q 009816 301 EAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRL-----DA 375 (524)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----~~ 375 (524)
+..++++...+....+............+|.++++. |.+..+.+.... .+... ++.++.|.++||+ ||
T Consensus 7 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~-----g~~~~~ig~~~~-~~~~~-~~~~l~gpl~Dr~~~~~~Gr 79 (491)
T PRK11010 7 RIFQQPNSAILLILGFASGLPLALTSGTLQAWMTVE-----NIDLKTIGFFSL-VGQAY-VFKFLWSPLMDRYTPPFLGR 79 (491)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCHHHHHHHHH-HHHHH-HHHHHHHHHHHcccccCCCC
Confidence 344556666666666777777778888899999885 999999988632 23332 5789999999999 88
Q ss_pred hHH-HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhh
Q 009816 376 RAI-TAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGT 454 (524)
Q Consensus 376 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 454 (524)
|+. +..+.+..+++...+....+..+.+...+..++.+++.+...+....+..+.+++ +.|+++.++....
T Consensus 80 rr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~--------~~rg~~~~i~~~g 151 (491)
T PRK11010 80 RRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPA--------EERGAGAAISVLG 151 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--------hhhHHHHHHHHHH
Confidence 886 4455555545544444433345566666677777888777777777888887763 6679999999999
Q ss_pred hhhhhhhhhhhhHhhcc-c-ChhHHHHHHHHHHHHHHHHH
Q 009816 455 GSVGAAIGPLLTGYISA-T-SWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 455 ~~~g~~i~~~~~g~l~~-~-~~~~~~~~~~~~~~~~~~~~ 492 (524)
..+|..+++.+.+++.+ . ||+..|++.+++.++..+..
T Consensus 152 ~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~ 191 (491)
T PRK11010 152 YRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT 191 (491)
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 4 99999999887766554433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-09 Score=111.23 Aligned_cols=144 Identities=11% Similarity=0.122 Sum_probs=117.8
Q ss_pred CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhh
Q 009816 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPY 420 (524)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (524)
++++..+.|.+.+.+.++.++++++.|++.||+|+|+.+..+.++..+..++.... ...+.+..++.-++.|++.+..+
T Consensus 71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWA-AGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHH-HHcCchHHHHHHHHHHHhcccch
Confidence 68999999999999999999999999999999999999888877766665544321 12234556667788899989988
Q ss_pred HHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHHHHHHHHH
Q 009816 421 ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~ 493 (524)
+....++.+..| ++.|+++.|+.+....+|..++|.+.+++.+. +|+..|++.++..++..++..
T Consensus 150 ~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~ 216 (465)
T TIGR00894 150 PATHKIIVKWAP--------PKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF 216 (465)
T ss_pred hhHHHHHHhcCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence 888888888887 36789999999999999999999999998876 899999988877665544443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=100.93 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=129.4
Q ss_pred CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhh
Q 009816 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPY 420 (524)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (524)
++-+..+.|++++...+.+++.+++.|.+.||+|+|..+.+++.++....+++.+ ..+.+..++.=.+-|++.+...
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf---g~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF---GNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH---cchhHHHHHHHHHhhhhHHHHH
Confidence 5667889999999999999999999999999999999999999988888777765 3566667777788999999999
Q ss_pred HHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 421 ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRLVVA 498 (524)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (524)
......+++.++++ +.|++++|+.-.+..+|..+||+++|.+++. |++..|.++++++++-..+.++...+
T Consensus 178 tsglamlAd~f~~d-------~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 178 TSGLAMLADVFPED-------NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred hhhHHHHHHHcccc-------hhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence 89999999999864 5679999999999999999999999999999 99999999999998887776655433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-09 Score=88.48 Aligned_cols=131 Identities=17% Similarity=0.289 Sum_probs=102.6
Q ss_pred HHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhh
Q 009816 352 STLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADL 431 (524)
Q Consensus 352 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (524)
.+...++.+++.++.|++.||++||+.+..+.....+..+.... ..+.+...+..++.|++.+...+.......+..
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL---SSNITVLIIARFLQGFGAAFALVAGAALIADIY 80 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 44567788899999999999999999988777776666555433 245566666777888888887878878888877
Q ss_pred cccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHH
Q 009816 432 GTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 432 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~ 493 (524)
++ +.++++.++.+....++..++|.+.+++.+. +|+..+.+.+...+++.+...
T Consensus 81 ~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (141)
T TIGR00880 81 PP--------EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLA 135 (141)
T ss_pred Ch--------hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence 63 6679999999999999999999999999887 888888887766665554443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-08 Score=103.11 Aligned_cols=159 Identities=18% Similarity=0.063 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc---c
Q 009816 323 YTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYG---H 399 (524)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 399 (524)
+.+..+.|.. ++. +|++..+.+.+...... .....++.|++.||+|+|+++.++.++..++.++...... .
T Consensus 44 y~fsv~s~~L-~~~----lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~ 117 (591)
T PTZ00207 44 YAFNLISGAM-QAR----YNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIE 117 (591)
T ss_pred HHHHHHHHHH-HHH----hCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444555554 444 79999999988766333 3345667899999999999999999988888776655311 1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcccChhHHHH
Q 009816 400 LSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFT 479 (524)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~ 479 (524)
.+.+.+.+..++.|++.+..++.....+.+.+| +.||++.|+......+|+++.+.+...+...+++..|+
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp---------~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl 188 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP---------SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFF 188 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 356666677777888877777777777777665 55799999999999999986554444444346777788
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009816 480 MLMAAALISGLLLTRLV 496 (524)
Q Consensus 480 ~~~~~~~~~~~~~~~~~ 496 (524)
+.+++.++..++...+.
T Consensus 189 ~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 189 FLMSFALVVGILAIVFM 205 (591)
T ss_pred HHHHHHHHHHHHHHhhe
Confidence 87777766655555443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=7e-09 Score=116.90 Aligned_cols=171 Identities=16% Similarity=0.188 Sum_probs=118.3
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHH---HH-HhhcccCCCCC-ChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhh
Q 009816 301 EAWKIPGVAPFALCLFFAKLVAYTFLYWLP---FY-VSHTAVDGKYL-SSEMAGNLSTLFDVGGVLGGILAGHISDRLDA 375 (524)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~ 375 (524)
.++++++++.+.+..++..+........++ .| +... .+. +....++..+++.+..++.+++.|+++||++|
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~r 81 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGA----LGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDK 81 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccH
Confidence 467778888777777766665433322222 11 2221 122 22456777788889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhh
Q 009816 376 RAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTG 455 (524)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 455 (524)
|+++........+............+.+.++++.++.|++.+...+...+.+.+.+++ +.++.++|+.++..
T Consensus 82 k~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~--------~~~~~a~~~~~~~~ 153 (1140)
T PRK06814 82 AKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNK--------DELLGANALVEAGT 153 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCc--------cccchhhHHHHHHH
Confidence 9976432222211111111111125677788888899999888889999999988874 66799999999999
Q ss_pred hhhhhhhhhhhHhhccc-ChhHHHHHHHH
Q 009816 456 SVGAAIGPLLTGYISAT-SWTAVFTMLMA 483 (524)
Q Consensus 456 ~~g~~i~~~~~g~l~~~-~~~~~~~~~~~ 483 (524)
.+|.++||.++|++.+. +|+..|...++
T Consensus 154 ~ig~~igp~l~g~l~~~~~~~~~~~~~~~ 182 (1140)
T PRK06814 154 FIAILLGTIIGGLATISGNFVILVALLMG 182 (1140)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 99999999999999887 88877733333
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-08 Score=102.27 Aligned_cols=120 Identities=17% Similarity=0.208 Sum_probs=96.5
Q ss_pred CCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHhhhhh
Q 009816 342 YLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHL---SLALNIALMFITGMFVNG 418 (524)
Q Consensus 342 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~ 418 (524)
..+..+.+++.+...++.+++.++.|+++||+|||+.+..+.++..++.++........ +....++.-++.|++.+.
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 131 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGG 131 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhh
Confidence 34566778889999999999999999999999999999888777777665544321111 245667778889999999
Q ss_pred hhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhh
Q 009816 419 PYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYI 469 (524)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 469 (524)
.++....++.+..|+ +.|+++.++.+....+|..+++.+...+
T Consensus 132 ~~~~~~~~~~e~~p~--------~~Rg~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 132 DYPLSAIITSEFATK--------KWRGAMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred hhHHHHHHHHHhcCh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999884 7789999999999999998888876654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.5e-06 Score=80.97 Aligned_cols=259 Identities=10% Similarity=0.038 Sum_probs=156.8
Q ss_pred hhHhHHHHHHHHHHHhh-hhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccch----------------------
Q 009816 110 ALLGELDLAFLSIYAGG-MFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVH---------------------- 166 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~-~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~---------------------- 166 (524)
..+.++-+...+...+. .++.+++++|++|++++-+....+....+++++...+..+
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 67889988888887777 8999999999999999888777777666666654211111
Q ss_pred ----hHHHHHHHHHHHHHhhhcchh-hHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhc---------Cc
Q 009816 167 ----SFYYYLVVQMLAGLFQSTGWP-SVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTY---------GW 232 (524)
Q Consensus 167 ----~~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~---------gw 232 (524)
+.|...+.-+...+-.....+ .-..+++|.++.+|-.|..++...+.++|.++++.+..++.+. .|
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~ 202 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGW 202 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChH
Confidence 123333444445554444554 7788999999999999999999999999999999888777621 24
Q ss_pred h----hHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCc
Q 009816 233 G----WSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGV 308 (524)
Q Consensus 233 r----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (524)
. ..+.+.++.+.+. +.+...+.+.....+.....+ + . .++++++.....+++.++++|.+
T Consensus 203 ~~~~~~l~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~-~--~------------~~k~k~k~~~~es~k~i~~S~yL 266 (472)
T TIGR00769 203 HVSLKNLMVIVICSGLAI-ILLYWWVNRNVLTDPRSYNPA-L--K------------EKKVKPKMSTMESLKFLVSSPYI 266 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCccccchh-h--c------------cccCCCCCCHHHHHHHHHhCHHH
Confidence 2 2333333333333 334444432221111000000 0 0 00011111235667888999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhh---hhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHH
Q 009816 309 APFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEM---AGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMY 385 (524)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 385 (524)
+.+.+...+.+..........-..+.+. +--+.+. .|.+....++..++..++.+++.+|+|-+....+.-++
T Consensus 267 ~~ia~~vi~y~~~~nlve~~~k~~v~~~----~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii 342 (472)
T TIGR00769 267 LDLALLVIAYGISINLVEVTWKSKLKAQ----YPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLV 342 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777776666655555544444444544 2212122 23344455666666677779999999988776655554
Q ss_pred HHH
Q 009816 386 CAI 388 (524)
Q Consensus 386 ~~~ 388 (524)
..+
T Consensus 343 ~li 345 (472)
T TIGR00769 343 MLL 345 (472)
T ss_pred HHH
Confidence 444
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=115.83 Aligned_cols=159 Identities=14% Similarity=0.133 Sum_probs=116.7
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC--ChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHH
Q 009816 302 AWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYL--SSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAIT 379 (524)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~ 379 (524)
.++++.++.+.+..++..+........+..++... ++. +....+++.+++.++.++++++.|+++||+|||+.+
T Consensus 5 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l 80 (1146)
T PRK08633 5 LLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKA----YDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVI 80 (1146)
T ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH----cCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHH
Confidence 45667777777777766655544444444444333 333 334467888888999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhh
Q 009816 380 AASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGA 459 (524)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 459 (524)
..+.++..+..++........+.+..++..++.|++.+...+....++.+.+++ +.++.++|+......+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--------~~r~~~~~~~~~~~~ig~ 152 (1146)
T PRK08633 81 RIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK--------ENLSRANGLLEAFTIVAI 152 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc--------ccchhhhhHHHHHHHHHH
Confidence 877765544444333222234566777777888988888888888888888874 667999999999999999
Q ss_pred hhhhhhhHhhccc
Q 009816 460 AIGPLLTGYISAT 472 (524)
Q Consensus 460 ~i~~~~~g~l~~~ 472 (524)
++|+.+++++.+.
T Consensus 153 ~lg~~l~~~l~~~ 165 (1146)
T PRK08633 153 LAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.3e-09 Score=105.78 Aligned_cols=119 Identities=17% Similarity=0.186 Sum_probs=100.8
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
.+.+++.+...++..++.+++++++||+|+|+++.++.++.+++.++..+. .++.+.+++..++.|++.+...+..
T Consensus 257 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~ 332 (437)
T TIGR00792 257 ELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA----GSNLPLILVLIILAGFGQNFVTGLV 332 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc----chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888899999999999999999999999999998888887777664 2466777788889999999889999
Q ss_pred HHHHhhccc-------cccccceehhhhhhhhhHHHHHHHHHHHhhh-cCc
Q 009816 190 VAVVGNWFG-------KSKRGLIMGIWNAHTSIGNITGSLVASALLT-YGW 232 (524)
Q Consensus 190 ~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~gw 232 (524)
.++++|..+ ++++|...|+.+....+|..+++.+.+.+.+ .||
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 333 WALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999998865 4557889999999999999999999988873 455
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-08 Score=100.44 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=112.1
Q ss_pred HHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 009816 327 YWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNI 406 (524)
Q Consensus 327 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (524)
..++...++. |-+ ....++.....++..++.++.|+++|.+|||..++.+.++..++.++... .++....+
T Consensus 65 ~~l~~I~~di-----G~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at---A~~~~~~i 135 (599)
T PF06609_consen 65 SILPYINADI-----GGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT---AQNMNTFI 135 (599)
T ss_pred HHHHHHHHhc-----CCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc---CCcHHHHH
Confidence 4455555553 654 55667778888999999999999999999999999999888888877653 45666777
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHH
Q 009816 407 ALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAA 485 (524)
Q Consensus 407 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~ 485 (524)
....+.|++.+... .....++|.+|. |.|....++.....-.....+|.+...+... +|++.|++.++..
T Consensus 136 ag~~l~GvgaG~~~-~~~~~isEl~p~--------k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~ 206 (599)
T PF06609_consen 136 AGMVLYGVGAGVQE-LAALAISELVPN--------KWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWS 206 (599)
T ss_pred HHHHHHHHhhHHHH-HHHHHHHHhccc--------chhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHH
Confidence 88888888755544 445557777763 5566666666555445555677777666554 9999999998887
Q ss_pred HHHHHHHHHHHHHHh
Q 009816 486 LISGLLLTRLVVAEV 500 (524)
Q Consensus 486 ~~~~~~~~~~~~~~~ 500 (524)
.++++...+++++.+
T Consensus 207 ~i~~vl~~~fY~PP~ 221 (599)
T PF06609_consen 207 GIALVLIFFFYFPPP 221 (599)
T ss_pred HHHHHHHHHHhCCCc
Confidence 777766655554433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-08 Score=102.83 Aligned_cols=122 Identities=16% Similarity=-0.014 Sum_probs=86.2
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHH-HHhccccccchhHHHHHHHHHHHHHhhhcchhh
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTS-LYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPS 188 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 188 (524)
.+.++....+.++..++.+++|+++||+|||++++.+.++..+... ..... ...+++..+.+..++.|++.+...+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~ 351 (434)
T PRK15075 274 ADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL--VAAPSFARMLAVELWLSFLYGSYNGA 351 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH--HcCCchHHHHHHHHHHHHHHHHHHhh
Confidence 6778888888999999999999999999999988776544332221 11110 00134444445556666776666677
Q ss_pred HHHHHhhccccccccceehhhhh-hhhhHHHHHHHHHHHhh-hcCch
Q 009816 189 VVAVVGNWFGKSKRGLIMGIWNA-HTSIGNITGSLVASALL-TYGWG 233 (524)
Q Consensus 189 ~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~ig~~l~~~l~-~~gwr 233 (524)
...++.|.+|+++|+.++++... +..++..++|.+.+.+. ..|++
T Consensus 352 ~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 352 MVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 77889999999999999998644 34445777898888887 45654
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=102.02 Aligned_cols=151 Identities=16% Similarity=0.230 Sum_probs=123.0
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCch--hhHHHHHHHHHHHHHHHhccc---cccchhHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLR--IFLTVGMVGTGLFTSLYGIGY---WGNVHSFYYYL 172 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr--~~l~~~~~~~~~~~~~~~~a~---~~~~~~~~~~~ 172 (524)
+|++. .++..+.-+..+...+|++++|++.||+|.| ++++++++++.+..+...+.. ....++-+.++
T Consensus 312 lg~s~-------~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~ 384 (477)
T PF11700_consen 312 LGMST-------TQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFW 384 (477)
T ss_pred cCcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHH
Confidence 88887 8888888889999999999999999999999 888888877754444433300 00127888899
Q ss_pred HHHHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh-c-CchhHHHHhHHHHHHHHHHH
Q 009816 173 VVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT-Y-GWGWSFVVPGLIIAFVGLIV 250 (524)
Q Consensus 173 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~-gwr~~f~~~~~~~~~~~~~~ 250 (524)
+.-++.|+..|..++...++.++..|+++.+..+|++....-....+||++-+.+.+ . +-|+.+....++.++. ++.
T Consensus 385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~g-l~l 463 (477)
T PF11700_consen 385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIG-LIL 463 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH-HHH
Confidence 999999999999999999999999999999999999999999999999999999884 3 4888888877665555 444
Q ss_pred HHhcCC
Q 009816 251 FLFLPV 256 (524)
Q Consensus 251 ~~~~~~ 256 (524)
+..++.
T Consensus 464 l~~v~~ 469 (477)
T PF11700_consen 464 LFFVDV 469 (477)
T ss_pred Hhhccc
Confidence 454543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7e-09 Score=99.68 Aligned_cols=146 Identities=20% Similarity=0.190 Sum_probs=127.1
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
...|.+.+...+.-.+...+..++.+|+|.|+.++++..+.++=.++++++ ++.+.+.+.+.+.|+-.+....+.
T Consensus 259 ~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-----~~~~~i~~~klLH~~e~~l~lva~ 333 (412)
T PF01306_consen 259 QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-----TNPWVISLIKLLHALEFPLLLVAA 333 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh-----cchHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHhhccccccccceehh-hhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCC
Q 009816 190 VAVVGNWFGKSKRGLIMGI-WNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPES 260 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~ 260 (524)
..++++.+|+|..+....+ .+...++|..+.+.++|.+. +.|.+.+|++++.+.++..++..+.+++++++
T Consensus 334 fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 334 FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 9999999998877777776 47888899999999999988 67999999999999988888888888765443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.94 E-value=9e-09 Score=101.72 Aligned_cols=142 Identities=15% Similarity=0.168 Sum_probs=105.4
Q ss_pred CCCCCCCCCCchhhHhHHHHHHH-HHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhc-cccccchhHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFL-SIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGI-GYWGNVHSFYYYLVVQ 175 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~-l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~r 175 (524)
.|+++ ++.|++..... ....++.++.|++.||+|+|+.+..+.++.++..+.... ......++...+....
T Consensus 238 ~G~s~-------~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (390)
T TIGR02718 238 AGWPL-------EWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCS 310 (390)
T ss_pred cCCCH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHH
Confidence 67776 88999888776 466677899999999999999988877665333322221 1000013344445555
Q ss_pred HHHHHhhhcchhhHHHHHhhcccc-ccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHH
Q 009816 176 MLAGLFQSTGWPSVVAVVGNWFGK-SKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFV 246 (524)
Q Consensus 176 ~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~ 246 (524)
.+.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+. ..||+..|++.+++.++.
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 666777777778888887777766 78999999999999999999999999998 469999998877665554
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-08 Score=97.35 Aligned_cols=153 Identities=16% Similarity=0.103 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhh-----hhhHHH-HHHHHHHHHHHHHHHHhh
Q 009816 324 TFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRL-----DARAIT-AASFMYCAIPALFFYRSY 397 (524)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----~~~~~~-~~~~~~~~~~~~~~~~~~ 397 (524)
.....+|.++++ .|+|..+.++.... .+...+ .++.|+++||+ ||||.+ ..+....++....+.+..
T Consensus 6 ~~~~~~~~~~~~-----~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~ 78 (356)
T TIGR00901 6 LVGNTLPYWLRS-----KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV 78 (356)
T ss_pred hHHhHHHHHHHH-----cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC
Confidence 344567888887 59999999998655 444444 88999999998 788875 444444444444443332
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-C---
Q 009816 398 GHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-S--- 473 (524)
Q Consensus 398 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~--- 473 (524)
+..+.+......++.+++.+...+...+.+.+..+ ++.|+.+.|+......+|..+++.+.+.+.+. +
T Consensus 79 ~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~ 150 (356)
T TIGR00901 79 PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILS--------DEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT 150 (356)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------HhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 22344444555555666666666777777777776 36679999999999999999999999888776 6
Q ss_pred -----hhHHHHHHHHHHHHHHHH
Q 009816 474 -----WTAVFTMLMAAALISGLL 491 (524)
Q Consensus 474 -----~~~~~~~~~~~~~~~~~~ 491 (524)
|+..|++.++..++..++
T Consensus 151 ~~~~~wr~~f~i~ai~~l~~~~~ 173 (356)
T TIGR00901 151 GLITLWGYIFFWTALLILPGLLV 173 (356)
T ss_pred ccccccHHHHHHHHHHHHHHHHH
Confidence 999998887766654433
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-08 Score=98.70 Aligned_cols=173 Identities=15% Similarity=0.031 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHh----hhhhhHHHHHHHHHH
Q 009816 311 FALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISD----RLDARAITAASFMYC 386 (524)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~~~~~~~~~~~~~~ 386 (524)
+....+...+.+.....+++.|+++ +|.++...+.+..+..+.+++..++.|+++| |+|||+..+......
T Consensus 9 ~~~~~~Giq~~~~l~~~~l~~yl~~-----lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 9 VASVAAGVQFGWALQLSLLTPYVQE-----LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence 3334444455666667788888877 5999999999999999999999999999999 599999987754444
Q ss_pred HHHH-HHHHHhhcc----------hh-H---HHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHH
Q 009816 387 AIPA-LFFYRSYGH----------LS-L---ALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAII 451 (524)
Q Consensus 387 ~~~~-~~~~~~~~~----------~~-~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 451 (524)
.+.. .++...... .+ . +..++.+.+..++.+...++..+.+.+..|++ .+.++.+.++.
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~------~~~~~~a~~~~ 157 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGD------ARRTRIANAYF 157 (477)
T ss_pred HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCch------hHHHHHHHHHH
Confidence 3333 333221100 00 0 22233344455677777777888888887753 23446789999
Q ss_pred HhhhhhhhhhhhhhhHhhc--c--------------cChhHHHHHHHHHHHHHHHHHHH
Q 009816 452 DGTGSVGAAIGPLLTGYIS--A--------------TSWTAVFTMLMAAALISGLLLTR 494 (524)
Q Consensus 452 ~~~~~~g~~i~~~~~g~l~--~--------------~~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
+....+|+.+++.+.+... + .+++..|++.+++.+++.++...
T Consensus 158 ~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~ 216 (477)
T TIGR01301 158 SFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALS 216 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHee
Confidence 9999999999998887641 1 05677888877777766665554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=96.91 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=102.3
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
+|+++ .+.++..+.+..++.++.+..+++.||+|+|+++.++.++..++.++.... ++... ...-++
T Consensus 173 ~g~s~-------~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-----~~~~~-~~~~~l 239 (310)
T TIGR01272 173 LGLPE-------DQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-----HGYVA-MWFVLA 239 (310)
T ss_pred CCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-----CCHHH-HHHHHH
Confidence 56666 889999999999999999999999999999999988888877777666553 33322 234557
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHH
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGL 241 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~ 241 (524)
.|++.+..+|...+...+.+|+ +.+.+.++. ....+|..++|++.|.+. ..|.+..|++..+
T Consensus 240 ~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 240 LGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence 8999999999999999998875 455666665 566789999999888887 4788888876443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=3e-08 Score=96.69 Aligned_cols=144 Identities=20% Similarity=0.136 Sum_probs=107.5
Q ss_pred HHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 009816 325 FLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLAL 404 (524)
Q Consensus 325 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (524)
....+|.+.++ +|.+..+.+++.+...++..++.++.|++.||+++|+.+..+.....++.+.. . .++.+.
T Consensus 19 ~~~~lp~l~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~---~~~~~~ 89 (355)
T TIGR00896 19 VGPLLPQIRSA-----LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S---APGTAL 89 (355)
T ss_pred CcccHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H---hccHHH
Confidence 34567777776 69999999999999999999999999999999999999888776665554433 2 234455
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc---ChhHHHHHH
Q 009816 405 NIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT---SWTAVFTML 481 (524)
Q Consensus 405 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~---~~~~~~~~~ 481 (524)
.++..++.|++.+...+.......+..+ +.++++.++.+....+|..+++.+.+.+.+. +|+..|...
T Consensus 90 l~~~~~~~g~g~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~ 160 (355)
T TIGR00896 90 LFAGTALIGVGIAIINVLLPSLIKRDFP---------QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWW 160 (355)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHhCc---------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5556666777766655555555544433 4578999999999999999999998888765 377777766
Q ss_pred HHHHH
Q 009816 482 MAAAL 486 (524)
Q Consensus 482 ~~~~~ 486 (524)
++..+
T Consensus 161 ~~~~~ 165 (355)
T TIGR00896 161 ALPAL 165 (355)
T ss_pred HHHHH
Confidence 55443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.2e-08 Score=97.08 Aligned_cols=130 Identities=18% Similarity=0.132 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHhhhhhhhHHHH
Q 009816 350 NLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGH-----LSLALNIALMFITGMFVNGPYALIT 424 (524)
Q Consensus 350 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (524)
...+...++..+++++.|+++||+|||+.+..+..+..++.+...+.... ......++.-++.|++.++.++...
T Consensus 67 ~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~ 146 (432)
T PRK10406 67 GVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSA 146 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHH
Confidence 34445556666999999999999999999999888887777665542211 1123455666788999999999999
Q ss_pred HHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhc---------ccChhHHHHHHHHHHHH
Q 009816 425 TAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYIS---------ATSWTAVFTMLMAAALI 487 (524)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~---------~~~~~~~~~~~~~~~~~ 487 (524)
+++.|..|+ +.|+...++.......|..+++.+...+. +.+|+..|++.++..++
T Consensus 147 ~~i~e~~p~--------~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 147 TYMSEVAVE--------GRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred HHHHHhCCC--------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 999988874 55688888777666677777666544332 33899999876655443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.6e-08 Score=90.50 Aligned_cols=144 Identities=17% Similarity=0.105 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009816 316 FFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYR 395 (524)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 395 (524)
|+.+......+-.+...+++. ++.+..+++++...+..+..+.++..+++.+|+|.|+-++.+..++++++.+++-
T Consensus 22 Ffl~G~~~~l~diLip~l~~~----f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~p 97 (422)
T COG0738 22 FFLWGFITCLNDILIPHLKEV----FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWP 97 (422)
T ss_pred HHHHHHHhhcchhhHHHHHHH----hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444555556666 7999999999999999999999999999999999999999999999999888764
Q ss_pred hhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcc
Q 009816 396 SYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISA 471 (524)
Q Consensus 396 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 471 (524)
.....++..+++.+++.+.+.+........++...-++ +..+.-+.+.+.++.+|++++|.+.+++..
T Consensus 98 Aa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~--------~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 98 AASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKP--------ESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc--------hhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44445677777888888888888877777777776653 344667788899999999999999998877
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-07 Score=86.54 Aligned_cols=350 Identities=14% Similarity=0.081 Sum_probs=207.4
Q ss_pred HHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhcccc
Q 009816 120 LSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGK 199 (524)
Q Consensus 120 ~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 199 (524)
.-.+.+.-.+.=.+.|..-.|+++++-.+.......+..+. ++.+.+=+.-+..|...+. ..+-++++-+..++
T Consensus 52 TYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g-----~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~ 125 (433)
T KOG3810|consen 52 TYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG-----PSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDP 125 (433)
T ss_pred hHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhc-----CCchheeeehhhcChHHHH-HHhhhheeeeecCH
Confidence 33445555666678899888998887766666666777775 8899998999999988654 57778899999999
Q ss_pred ccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHH--hHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCcccc
Q 009816 200 SKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVV--PGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKI 277 (524)
Q Consensus 200 ~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (524)
+++.++.+...+..-.|...|..++-.+...+|-.-+.. ..+....++.....++|..++..-..+.+++....+.++
T Consensus 126 ~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~ 205 (433)
T KOG3810|consen 126 EMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEE 205 (433)
T ss_pred HHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchh
Confidence 999999999999999999999988888875433222221 122333344555566775543221111111111000000
Q ss_pred CCCccccccc-chhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHH
Q 009816 278 GEGVTQPLLR-RETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFD 356 (524)
Q Consensus 278 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 356 (524)
..+ ..+..+ .+.........+....+||++....+...+..++++...++.-..-.+.. -+-....-|..-++..
T Consensus 206 ~~~-~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~---~~~~~vyNG~veAv~t 281 (433)
T KOG3810|consen 206 MNP-QASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA---PNPANVYNGAVEAVST 281 (433)
T ss_pred cCc-cchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC---CCchhhhcCHHHHHHH
Confidence 000 000000 00111122345566778999988888888888787777766655555541 0111222344455666
Q ss_pred HHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccccc
Q 009816 357 VGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSS 436 (524)
Q Consensus 357 ~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (524)
+.++++.+..|.+--++.|..-+.++.....-+.+++.. ...++.|+..+...++...+....+.....++....
T Consensus 282 lLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m-~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~---- 356 (433)
T KOG3810|consen 282 LLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIM-AQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLS---- 356 (433)
T ss_pred HHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhh-hcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhh----
Confidence 777788888888877666654333332222222223222 234567777788888877777776676677777665
Q ss_pred CCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc------------ChhHHHHHHHHHHHHHHHH
Q 009816 437 LKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT------------SWTAVFTMLMAAALISGLL 491 (524)
Q Consensus 437 ~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~------------~~~~~~~~~~~~~~~~~~~ 491 (524)
.+..|...|++.++.-+-..+-..+ +.|. -|..-|.+.+++.+++...
T Consensus 357 ----~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~ 416 (433)
T KOG3810|consen 357 ----SELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGI 416 (433)
T ss_pred ----hhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHH
Confidence 3556778887766554443333322 2332 1344566666666655444
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.7e-09 Score=107.52 Aligned_cols=144 Identities=15% Similarity=0.211 Sum_probs=114.1
Q ss_pred CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc----------------------
Q 009816 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYG---------------------- 398 (524)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 398 (524)
++++..+.|++.+.+.++..++.++.+++.||.+||+.+.++.++.+++.++..+...
T Consensus 63 F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~ 142 (633)
T TIGR00805 63 FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANS 142 (633)
T ss_pred hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccc
Confidence 7999999999999999999999999999999999999998888888887776643210
Q ss_pred --------------------------chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHH
Q 009816 399 --------------------------HLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIID 452 (524)
Q Consensus 399 --------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 452 (524)
......+++.-++.|++.+..++....++.+.+++ +.++...|+.+
T Consensus 143 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~--------~~~~~~~~i~~ 214 (633)
T TIGR00805 143 FLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKS--------KNSPLYIGILE 214 (633)
T ss_pred ccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCc--------cccHHHHHHHH
Confidence 00133455677889999999888888888888874 66799999999
Q ss_pred hhhhhhhhhhhhhhHhhccc--C---------------------hhHHHHHHHHHHHHHHHHH
Q 009816 453 GTGSVGAAIGPLLTGYISAT--S---------------------WTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 453 ~~~~~g~~i~~~~~g~l~~~--~---------------------~~~~~~~~~~~~~~~~~~~ 492 (524)
....+|..+|+.+++++.+. + |+..|++.+++.++.++..
T Consensus 215 ~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l 277 (633)
T TIGR00805 215 SIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF 277 (633)
T ss_pred HHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887642 1 4556777666666554443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=100.17 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=128.1
Q ss_pred CCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhh
Q 009816 340 GKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGP 419 (524)
Q Consensus 340 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (524)
.+++++.+-+++.+....|.+++.+.+|++.||+|.|+++..+.++.++..++..... ..+.+..+++-++.|++.+..
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa-~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAA-SIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHhHHHHhHH
Confidence 3788999999999999999999999999999999999999999888888777765532 233345677788899999999
Q ss_pred hHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHHHHHHHHHHHHH
Q 009816 420 YALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAALISGLLLTRLVV 497 (524)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
++.......+-.|+ +.|++..++.....++|.+++-++.|++-+. ||+..|++.+++.++..++.+++..
T Consensus 146 ~pa~~~i~~~W~P~--------~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 146 FPAIGSILAKWAPP--------NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HhhhhceeeeECCH--------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999888884 6679999999999999999999999999988 9999999999998877776665544
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=94.24 Aligned_cols=146 Identities=15% Similarity=0.195 Sum_probs=123.9
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQML 177 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l 177 (524)
+||+. .++.++.-...+...++++++|++.||+|.|+++..++++..+..+..-+. ..-..+.++-.+
T Consensus 283 ~gls~-------~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~-----~~~~~f~i~gll 350 (438)
T COG2270 283 LGLSS-------TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL-----EGELDFWILGLL 350 (438)
T ss_pred cCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc-----cccHHHHHHHHH
Confidence 88887 999999999999999999999999999999999999999988888777774 666777888899
Q ss_pred HHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh--cCchhHHHHhHHHHHHHHHHHHHhcC
Q 009816 178 AGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT--YGWGWSFVVPGLIIAFVGLIVFLFLP 255 (524)
Q Consensus 178 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~ 255 (524)
.|...|..+..+.++..+..|++|-++.+|++....-.+..+||.+-+.+.+ .+-|..+....++..+. ++.+..+|
T Consensus 351 ~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iG-l~~L~~v~ 429 (438)
T COG2270 351 VGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIG-LLLLLRVK 429 (438)
T ss_pred HHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhh-HhhEEeec
Confidence 9999999999999999999999999999999999999999999999998884 35677666655444333 44444454
Q ss_pred C
Q 009816 256 V 256 (524)
Q Consensus 256 ~ 256 (524)
+
T Consensus 430 ~ 430 (438)
T COG2270 430 V 430 (438)
T ss_pred C
Confidence 4
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.3e-08 Score=90.61 Aligned_cols=119 Identities=21% Similarity=0.346 Sum_probs=94.7
Q ss_pred CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhh
Q 009816 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPY 420 (524)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (524)
.+.+...+|++-+.+++...+.++..|.++||+|||.++..+....++..++... +.+...++..=++.|++ .+..
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~---S~~F~afv~aR~l~Gi~-kgnl 138 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL---SRNFAAFVLARFLGGIF-KGNL 138 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhc-cCch
Confidence 4456778899999999999999999999999999999999888887775555543 34553333334556655 4556
Q ss_pred HHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcc
Q 009816 421 ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISA 471 (524)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 471 (524)
+...+++++..++ +.++.+++.++....+|.++||.++|++..
T Consensus 139 ~v~rAiisdV~se--------k~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 139 SVIRAIISDVVSE--------KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHhhcCh--------hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 6778888888774 667899999999999999999999999987
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=88.54 Aligned_cols=144 Identities=15% Similarity=0.096 Sum_probs=105.8
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHH-HHHHHhccccccchhHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGL-FTSLYGIGYWGNVHSFYYYLVVQM 176 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~r~ 176 (524)
+|+++ ...+.+.+.-..-.++.+++.|.++||+|++...+.+..+..+ +-....+ +++.=++...
T Consensus 295 fGlS~-------~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F-------t~lsPy~~m~ 360 (459)
T KOG4686|consen 295 FGLSA-------VSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF-------TFLSPYTSMT 360 (459)
T ss_pred hCCCh-------hhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh-------hhccHHHHHH
Confidence 88887 7788888888888889999999999999999887776555444 3333333 2333345667
Q ss_pred HHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh----cCchhHHHHhHHHHHHHHHHHHH
Q 009816 177 LAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT----YGWGWSFVVPGLIIAFVGLIVFL 252 (524)
Q Consensus 177 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~----~gwr~~f~~~~~~~~~~~~~~~~ 252 (524)
+.|+............++...|+++.|.+.|..+...++|..+.|++++.+.+ +.|--.|++......+..+...+
T Consensus 361 ~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 361 FLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILF 440 (459)
T ss_pred HHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 77887776666667778888999999999999999999999999999999983 34655665544444444344444
Q ss_pred hcC
Q 009816 253 FLP 255 (524)
Q Consensus 253 ~~~ 255 (524)
.+.
T Consensus 441 ~~N 443 (459)
T KOG4686|consen 441 YLN 443 (459)
T ss_pred hee
Confidence 443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6e-08 Score=95.23 Aligned_cols=155 Identities=16% Similarity=0.152 Sum_probs=114.9
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchh--HH--HHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHS--FY--YYLV 173 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~--~~--~~~~ 173 (524)
-|++. .+.-+......+...+..+++..+.||+|||+.++.+..++.+..+++..+....... +. ..++
T Consensus 300 aG~~~-------~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~ 372 (485)
T KOG0569|consen 300 AGFTP-------EEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIA 372 (485)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 56666 7778888888999999999999999999999999999999988888777642111011 11 1233
Q ss_pred HHHHHHHhhhc-chhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHH
Q 009816 174 VQMLAGLFQST-GWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVF 251 (524)
Q Consensus 174 ~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~ 251 (524)
+.++..++.+. .-|...-+.+|.+|++.|+.++++.....-+...+-...-..+. .+|- +.|++..+.+++..+..+
T Consensus 373 ~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~ 451 (485)
T KOG0569|consen 373 AIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLY 451 (485)
T ss_pred HHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHH
Confidence 44444443332 25788889999999999999999988888877776655555554 3454 777888888888889999
Q ss_pred HhcCCCCCC
Q 009816 252 LFLPVNPES 260 (524)
Q Consensus 252 ~~~~~~~~~ 260 (524)
+.+||++.+
T Consensus 452 ~~lPETkgr 460 (485)
T KOG0569|consen 452 RYLPETKGR 460 (485)
T ss_pred HhCcccCCC
Confidence 999998644
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.9e-08 Score=95.55 Aligned_cols=144 Identities=19% Similarity=0.291 Sum_probs=114.9
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHH----HHHHHHHHhhhcc
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYL----VVQMLAGLFQSTG 185 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~r~l~G~~~~~~ 185 (524)
...|.+.+...++-.+.-...+++..|+|.|+++.++.+..++=..+.+.. .++.+... ....++|+..+..
T Consensus 243 ~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~----~~~~~~~~~~~~l~q~lhG~tf~~~ 318 (400)
T PF03825_consen 243 STIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF----SDPWPFIVALQLLGQLLHGLTFGLF 318 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHhhhhHHHHHH
Confidence 556777777778888888999999999999999999999998888787774 23444333 3355799999999
Q ss_pred hhhHHHHHhhccccccccceehhhhhh-hhhHHHHHHHHHHHhhh-cC------chhHHHHhHHHHHHHHHHHHHhcCCC
Q 009816 186 WPSVVAVVGNWFGKSKRGLIMGIWNAH-TSIGNITGSLVASALLT-YG------WGWSFVVPGLIIAFVGLIVFLFLPVN 257 (524)
Q Consensus 186 ~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~ig~~l~~~l~~-~g------wr~~f~~~~~~~~~~~~~~~~~~~~~ 257 (524)
+.+...++.+..|++.|+++.+++... .++|..+|..++|++.+ +| |...+.+.+++.++..++.+++.+|+
T Consensus 319 ~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 319 HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999998874 68999999999999984 33 55666777776666666666665543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.8e-07 Score=79.50 Aligned_cols=333 Identities=15% Similarity=0.085 Sum_probs=174.6
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
.++|.+.-+.+-...+.+.+.|.++|+-|||+.-+.-++...++++ .-.+ +.|-.++++|++-|+..+..+.+.
T Consensus 72 G~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhS-----pqYkVLmVGR~LGGiaTsLLFSaF 145 (454)
T KOG4332|consen 72 GDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHS-----PQYKVLMVGRVLGGIATSLLFSAF 145 (454)
T ss_pred CccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcC-----CceEEEeehhhhhhHHHHHHHHHH
Confidence 6778777777777788888999999999999975555444443332 2233 889999999999999999988887
Q ss_pred HHH-Hhhccccccccceehhhhh--------hhhhHHHHHHHHHHHhhh---cCchhHHHHhHHHHHHHHHHHHHhcCCC
Q 009816 190 VAV-VGNWFGKSKRGLIMGIWNA--------HTSIGNITGSLVASALLT---YGWGWSFVVPGLIIAFVGLIVFLFLPVN 257 (524)
Q Consensus 190 ~~~-i~~~~~~~~r~~~~~~~~~--------~~~~G~~ig~~l~~~l~~---~gwr~~f~~~~~~~~~~~~~~~~~~~~~ 257 (524)
.++ +.|.- ++|+.-.-+... ++.+=.+++.+.+..+.+ .|--.+|-..+.+..+... ..+..-
T Consensus 146 EsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmA---vil~~W 220 (454)
T KOG4332|consen 146 ESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMA---VILSSW 220 (454)
T ss_pred HHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH---HHHhhh
Confidence 776 45544 345543333322 233334444555555542 3555666654433332222 222221
Q ss_pred CCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 009816 258 PESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYT-FLYWLPFYVSHT 336 (524)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 336 (524)
.+....+.++ ++ ...+.+...+.+..+.++..+.....+.-...+. ...|.|..--+.
T Consensus 221 ~ENygdps~~-kd--------------------lltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~ 279 (454)
T KOG4332|consen 221 SENYGDPSEN-KD--------------------LLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND 279 (454)
T ss_pred hhccCChhhh-HH--------------------HHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCc
Confidence 1111111100 00 0001122233445555554443333332222222 223444322111
Q ss_pred ccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHHh----hcchhHHHHHHHHH
Q 009816 337 AVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDAR--AITAASFMYCAIPALFFYRS----YGHLSLALNIALMF 410 (524)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 410 (524)
...--|++++.+.++.++|+-+..++..|-..| ..+.+.+.+......+.... ....+.....+.++
T Consensus 280 -------e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~ 352 (454)
T KOG4332|consen 280 -------EEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFC 352 (454)
T ss_pred -------ccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHH
Confidence 122346788888899999988887777665433 22333333333222222111 11123344456666
Q ss_pred HHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHh--hccc--ChhHHHHHHHHHHH
Q 009816 411 ITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGY--ISAT--SWTAVFTMLMAAAL 486 (524)
Q Consensus 411 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~--l~~~--~~~~~~~~~~~~~~ 486 (524)
++-.+.+..++.+.-.-.+.+|+ +.|++ +.|.+.---.++.-...-- ..+. +-+..|-++.+...
T Consensus 353 ~~E~cvGlfwPSimkmRsqyIPE--------earst---imNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~ 421 (454)
T KOG4332|consen 353 LFEACVGLFWPSIMKMRSQYIPE--------EARST---IMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLF 421 (454)
T ss_pred HHHHHHhhcchHHHHHHHhhCCH--------HHHhh---hhhheechhhHhhhhhheecccccCccccchhhhhhHHHHH
Confidence 77778888899888888888875 44444 4444432222211111111 1111 55677777777666
Q ss_pred HHHHHH
Q 009816 487 ISGLLL 492 (524)
Q Consensus 487 ~~~~~~ 492 (524)
++.+..
T Consensus 422 ~a~i~~ 427 (454)
T KOG4332|consen 422 VASILQ 427 (454)
T ss_pred HHHHHH
Confidence 654443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-08 Score=99.92 Aligned_cols=174 Identities=14% Similarity=0.142 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHH
Q 009816 39 VLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLA 118 (524)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~ 118 (524)
.+....+..........+..+.+|...++ .|.++ .+.+.+.++
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~------------------------------~g~~~-------~~aa~l~Si 341 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKS------------------------------LGLSS-------NDAAFLLSI 341 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------------cCCCh-------hhhHHHHHH
Confidence 34445555555555666666667766665 77777 899999999
Q ss_pred HHHHHHhhhhhhhcccccCC--chhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhc
Q 009816 119 FLSIYAGGMFFSGHLGDRLD--LRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNW 196 (524)
Q Consensus 119 ~~l~~~~~~~~~G~l~Dr~G--rr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~ 196 (524)
..+...++.++.|+++|+.. ++.+..+++++.+++.+.++++ ++++.++..-++.|++.|........++.|.
T Consensus 342 igi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~-----~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~ 416 (509)
T KOG2504|consen 342 IGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA-----TTYVGLIVFSILFGFCVGSFSSLTPVILVDL 416 (509)
T ss_pred HHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988 5567888888888888888887 9999999999999999999888888899999
Q ss_pred cccccccceehhhhhhhhhHHHHHHHHHHHhhh-c-CchhHHHHhHHHHHHHHHHHHHhcC
Q 009816 197 FGKSKRGLIMGIWNAHTSIGNITGSLVASALLT-Y-GWGWSFVVPGLIIAFVGLIVFLFLP 255 (524)
Q Consensus 197 ~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~-gwr~~f~~~~~~~~~~~~~~~~~~~ 255 (524)
.+.++...+.|+.....+++.++||++++.+.+ . +|...|+..++..++.++ .++..+
T Consensus 417 ~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~-~~~~~~ 476 (509)
T KOG2504|consen 417 VGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAV-LLLILR 476 (509)
T ss_pred cChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHH-HHHHhH
Confidence 999999999999999999999999999998774 3 499999998887776644 444444
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=89.68 Aligned_cols=133 Identities=31% Similarity=0.473 Sum_probs=110.4
Q ss_pred hHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHH
Q 009816 111 LLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVV 190 (524)
Q Consensus 111 ~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 190 (524)
+.++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++.++... .+.+.+.+.|+++|++.+...+...
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~ 116 (338)
T COG0477 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN---VGLALLLILRLLQGLGGGGLLPVAS 116 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5789999999999999999999999999998888888766666666666510 2589999999999999999999999
Q ss_pred HHHhhcccc-ccccceehhhhh-hhhhHHHHHHHHHHHhhhc---CchhHHHHhHHHHHHH
Q 009816 191 AVVGNWFGK-SKRGLIMGIWNA-HTSIGNITGSLVASALLTY---GWGWSFVVPGLIIAFV 246 (524)
Q Consensus 191 ~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~ig~~l~~~l~~~---gwr~~f~~~~~~~~~~ 246 (524)
+++.|++|+ ++|+...+.... ...+|..++|.+++.+... +||+.|.+........
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 117 ALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 999999987 678888888888 5888999999888877743 8999777766555433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.8e-08 Score=96.89 Aligned_cols=116 Identities=14% Similarity=0.048 Sum_probs=94.1
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
...++......++..++.++++++.||+|+|+++.++.++.+++.++..+. ..++++.+++..++.|+|.+...+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~g~G~~~~~~~~ 340 (448)
T PRK09848 264 LFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV---SVWSLPVALVALAIASIGQGVTMTVM 340 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455567788899999999999999999999998888887777653 12467777778889999999999999
Q ss_pred HHHHhhccccc-------cccceehhhhhhhhhHHHHHHHHHHHhh
Q 009816 190 VAVVGNWFGKS-------KRGLIMGIWNAHTSIGNITGSLVASALL 228 (524)
Q Consensus 190 ~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~ig~~l~~~l~ 228 (524)
.++++|..|.+ ++|...+..+....+|..+|+.+.+.+.
T Consensus 341 ~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 341 WALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988754 3488889999999999999998888775
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.5e-06 Score=87.27 Aligned_cols=142 Identities=14% Similarity=0.102 Sum_probs=111.5
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhccccc-CCchhhHHHHHHHHHHHHHHHhccccccc---hhHHHHHHHHHHHHHhhhcc
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDR-LDLRIFLTVGMVGTGLFTSLYGIGYWGNV---HSFYYYLVVQMLAGLFQSTG 185 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~---~~~~~~~~~r~l~G~~~~~~ 185 (524)
++...+...+....-+.++++|+++|+ +||++.++++.++..++.++.+++..... ......+++-.+..+|.|+.
T Consensus 23 ~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~Ggi 102 (654)
T TIGR00926 23 STSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGI 102 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhcccc
Confidence 677777788888888899999999996 69999999999999999988877422111 12234566777788899999
Q ss_pred hhhHHHHHhhccccc---cccceehhhhhhhhhHHHHHHHHHHHhh-hc-------CchhHHHHhHHHHHHHHHHHH
Q 009816 186 WPSVVAVVGNWFGKS---KRGLIMGIWNAHTSIGNITGSLVASALL-TY-------GWGWSFVVPGLIIAFVGLIVF 251 (524)
Q Consensus 186 ~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~-------gwr~~f~~~~~~~~~~~~~~~ 251 (524)
-|...+...|.++++ +|...+.++..+.++|..+++++..++. ++ +|...|.+.+++.++..++..
T Consensus 103 Kp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 103 KPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred ccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999754 3667888999999999999998888876 32 599999998877766644433
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-05 Score=74.21 Aligned_cols=311 Identities=14% Similarity=0.043 Sum_probs=166.0
Q ss_pred hhhhhhcccc-----cCCchhhHHH-HHHHHHHHHHHHhcccc------ccchhHHHHHHHHHHHHHhhhcchhhHHHHH
Q 009816 126 GMFFSGHLGD-----RLDLRIFLTV-GMVGTGLFTSLYGIGYW------GNVHSFYYYLVVQMLAGLFQSTGWPSVVAVV 193 (524)
Q Consensus 126 ~~~~~G~l~D-----r~Grr~~l~~-~~~~~~~~~~~~~~a~~------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i 193 (524)
.-++|.++.| |+||||..++ +..+.+....+.+.-.- ...++...+...-++.-+..+.-..+.-...
T Consensus 79 LKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwA 158 (510)
T KOG3574|consen 79 LKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWA 158 (510)
T ss_pred HHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 4578899999 9999986433 33333322222222100 1123344444444556666666667777777
Q ss_pred hhccccccccceehhhhhhhhhHHHHHHHHHHHhhh--------cCch---------hHHHHhHHHHHHHHHHHHHhcCC
Q 009816 194 GNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT--------YGWG---------WSFVVPGLIIAFVGLIVFLFLPV 256 (524)
Q Consensus 194 ~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~--------~gwr---------~~f~~~~~~~~~~~~~~~~~~~~ 256 (524)
-.+..+++.|.+......+...|..++..+--.+.. .+|. ...++.+.+.++...+..+.-+|
T Consensus 159 LtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke 238 (510)
T KOG3574|consen 159 LTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKE 238 (510)
T ss_pred HHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777778888877776666666666666544322221 1232 12334455555555555444333
Q ss_pred CCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009816 257 NPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHT 336 (524)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (524)
.+++.. ++ .+....+..+-++++++-|.+..+.......-.++.+.-...+.-+.+
T Consensus 239 ~~~~~~-----~e------------------~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle- 294 (510)
T KOG3574|consen 239 NDESVD-----EE------------------LELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE- 294 (510)
T ss_pred Cchhhh-----hh------------------hhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-
Confidence 322210 00 000112234456788888988888877777777777777777888888
Q ss_pred ccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHHHHhhcc------hhHHH
Q 009816 337 AVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRL------DARAITAASFMYCAIPALFFYRSYGH------LSLAL 404 (524)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 404 (524)
+|++..+.+++..+.-...++.....|++.... -|+-...+....+........-.... .....
T Consensus 295 ----~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~i 370 (510)
T KOG3574|consen 295 ----HGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYI 370 (510)
T ss_pred ----cCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHH
Confidence 499999988776444444444444444443311 11111112111111111111100000 01111
Q ss_pred -HHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 405 -NIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 405 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
.+....+.+.+.-..+...+...++..+ +..-|+.+.+.|...++|+-.-..++.++.|.
T Consensus 371 l~i~~y~~~~~~~ts~fv~~maf~aqisd--------p~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ 431 (510)
T KOG3574|consen 371 LLITSYAFHQVFVTSMFVSGMAFHAQISD--------PAIGGTYMTLLNTLSNLGGNWPGTVALWLADG 431 (510)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCC--------cccCccHHHHHHHHHHhcCCcHHHHHHHhccc
Confidence 1112223333333333344444444444 45669999999999999999888888888874
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.3e-07 Score=90.89 Aligned_cols=152 Identities=11% Similarity=0.121 Sum_probs=117.7
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccc--c---ccchhHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGY--W---GNVHSFYYYL 172 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~--~---~~~~~~~~~~ 172 (524)
+|+++ .+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+...... + ...++.+.+.
T Consensus 283 lG~s~-------~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~ 355 (468)
T TIGR00788 283 LPGGP-------SFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVL 355 (468)
T ss_pred CCCCc-------chhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeee
Confidence 77777 8999999999999999999999999999999999999999988876653210 0 0013344566
Q ss_pred HHHHHHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh-cC-----c--hhHHHHhHHHHH
Q 009816 173 VVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT-YG-----W--GWSFVVPGLIIA 244 (524)
Q Consensus 173 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~g-----w--r~~f~~~~~~~~ 244 (524)
..-++.+++.+....+...++.+..|+++++...++.....++|..+++.+++.+.+ .| . ++...+...+.-
T Consensus 356 ~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~ 435 (468)
T TIGR00788 356 GDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAP 435 (468)
T ss_pred ehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHH
Confidence 677888999898889999999999999999999999999999999999999999884 33 3 333333333333
Q ss_pred HHHHHHHHhcCC
Q 009816 245 FVGLIVFLFLPV 256 (524)
Q Consensus 245 ~~~~~~~~~~~~ 256 (524)
+..+....++|+
T Consensus 436 l~~l~~~~llP~ 447 (468)
T TIGR00788 436 LLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHhCCC
Confidence 333444456776
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3e-07 Score=94.59 Aligned_cols=138 Identities=20% Similarity=0.296 Sum_probs=118.1
Q ss_pred CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhh
Q 009816 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPY 420 (524)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (524)
.+.+.....+..+++.++..+|.++.|.++||+|||+++.++.++..++.+...+ ..+.+..++.-++.|++.++..
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~---a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF---APNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH---hCcHHHHHHHHHHHHhhccchh
Confidence 4667778888899999999999999999999999999999999988888766554 4788888999999999999999
Q ss_pred HHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcccChhHHHHHHHHHHHHHHHH
Q 009816 421 ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLL 491 (524)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 491 (524)
.....+..|.+++ +.|+.+..+ ..+...++.+++...+++.. +|++.+++..+..++..++
T Consensus 190 ~~~~~~~~E~~~~--------~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 190 TVGFGLVAEIVSP--------KQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred HHhHhhheeecCc--------chhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH
Confidence 9999999998884 778888888 77788888889988888877 6999998887777665554
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00026 Score=68.73 Aligned_cols=182 Identities=16% Similarity=0.017 Sum_probs=92.2
Q ss_pred hcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh--c---Cch------------hHHHHhHHHHHH
Q 009816 183 STGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT--Y---GWG------------WSFVVPGLIIAF 245 (524)
Q Consensus 183 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~--~---gwr------------~~f~~~~~~~~~ 245 (524)
+--..+.-...-....+++++.+..-...+.++|..++..+--.+.+ + -+| .-..+.+.+.++
T Consensus 133 ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~ 212 (544)
T PF13000_consen 133 ATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLI 212 (544)
T ss_pred ccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHH
Confidence 33334444444555667777776666555555555555444333321 1 011 123344555556
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccccCCcc-c----cCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHH
Q 009816 246 VGLIVFLFLPVNPESVGTDTNEEDESLSPK-K----IGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKL 320 (524)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (524)
..+...++-+|.|......+.+.......+ + +.++.+....++....++......+++|.|.+..+.+.....-.
T Consensus 213 ~T~~v~~~k~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~Ki 292 (544)
T PF13000_consen 213 VTILVAFFKKEKPHSESLPKIEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKI 292 (544)
T ss_pred HHHHHheEeecccccccCccccccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 656666666665533221111110000000 0 00000000011112233455667788999999888888777777
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHH
Q 009816 321 VAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHI 369 (524)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 369 (524)
++...-.....-+.+ .|++.+..+.+..+..-..++..+..+++
T Consensus 293 gF~a~da~T~LKLlE-----kG~~KE~LAl~~li~~P~qii~~~~~~Kw 336 (544)
T PF13000_consen 293 GFQANDAVTSLKLLE-----KGLSKEDLALLVLIDFPFQIILPYYIGKW 336 (544)
T ss_pred ccccchhhhHHHHHH-----cCCCHHHhHHHHHHhhhHHHHHHHHhhhh
Confidence 766655666666667 59999988776655444444444444444
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-06 Score=88.34 Aligned_cols=143 Identities=10% Similarity=0.014 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhh----hhhhHHH-HHHHHHHH
Q 009816 313 LCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDR----LDARAIT-AASFMYCA 387 (524)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~-~~~~~~~~ 387 (524)
+..+..+........+++.|+++. .|+++..+|.++.+.-+...+..++.|+++|| +||||.. ..+...++
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v----~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~ 88 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDV----VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANS 88 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHH
Confidence 344445556666778889999998 89999999999999999999999999999995 5886654 44555555
Q ss_pred HHHHHHHHhhcc--h--hHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhh
Q 009816 388 IPALFFYRSYGH--L--SLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGP 463 (524)
Q Consensus 388 ~~~~~~~~~~~~--~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~ 463 (524)
+...++.. .+. . ...+..+..++.+.++.....+..+...+..++ ++.|.+..+.......+|+.+.+
T Consensus 89 i~~~llf~-~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~-------~~eR~~l~~~~~~~~~ig~~~~~ 160 (473)
T PRK10429 89 VVLFLLFS-AHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLD-------KREREQLVPYPRFFASLAGFVTA 160 (473)
T ss_pred HHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCC-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444432 121 1 122334444455666666655666666554433 46677777776666666666655
Q ss_pred hhhH
Q 009816 464 LLTG 467 (524)
Q Consensus 464 ~~~g 467 (524)
.+..
T Consensus 161 ~~~~ 164 (473)
T PRK10429 161 GFTL 164 (473)
T ss_pred HHHH
Confidence 4433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.3e-07 Score=91.71 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=101.2
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
...+.+...+.++..++.+++++++||+|+|+++..+.++.+++.++..+.. .++.+.+++.-++.|++.+...+..
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~gi~~~~~~~~~ 336 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG---PGSPWLVLILFILAGIGYGAFFVIP 336 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH---hhhHHHHHHHHHHhHhhhccccccc
Confidence 4567788899999999999999999999999999999999999999888851 1489999999999999999999999
Q ss_pred HHHHhhcccc-------ccccceehhhhhhhhhHHHHHHHHHHHhh
Q 009816 190 VAVVGNWFGK-------SKRGLIMGIWNAHTSIGNITGSLVASALL 228 (524)
Q Consensus 190 ~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~ig~~l~~~l~ 228 (524)
.++++|..+. ++.|...|.......+|..+++.+.+.+.
T Consensus 337 ~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 337 WAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred ccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999873 33477888888888899999988887775
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.6e-07 Score=91.14 Aligned_cols=164 Identities=10% Similarity=0.064 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhh----hhhhHHHH-HHHHHHHHHH
Q 009816 316 FFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDR----LDARAITA-ASFMYCAIPA 390 (524)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~-~~~~~~~~~~ 390 (524)
+..+........+++.|+.+. +|+++..+|.+..+.-+...+..++.|+++|| +||||..+ .+.+..++..
T Consensus 19 ~~~~~~~~~~~~~l~~~~t~~----~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~ 94 (444)
T PRK09669 19 TACNLVWQTVMLFLAYFYTDV----FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVC 94 (444)
T ss_pred hhhhHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHH
Confidence 333444555667888888888 89999999999999999999999999999999 56655544 4545554544
Q ss_pred HHHHHhhc---chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhH
Q 009816 391 LFFYRSYG---HLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTG 467 (524)
Q Consensus 391 ~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g 467 (524)
.++..... .....+..+...+.+.+......+..+..++...+ ++.|++..+.......+|..+++.+..
T Consensus 95 ~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~-------~~eR~~l~~~r~~~~~~G~~i~~~~~~ 167 (444)
T PRK09669 95 LLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITND-------PRERHSLQSWRFALSFIGGLIVSVIAL 167 (444)
T ss_pred HHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43332211 11233444444455555555555555555544332 356777777777777777777665433
Q ss_pred h----hcc---c-ChhHHHHHHHHHHHHHHH
Q 009816 468 Y----ISA---T-SWTAVFTMLMAAALISGL 490 (524)
Q Consensus 468 ~----l~~---~-~~~~~~~~~~~~~~~~~~ 490 (524)
. +.+ . +|...+.+.+++.+++.+
T Consensus 168 pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 168 PLVDILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred HHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 2 221 1 555566656555554443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.3e-07 Score=88.44 Aligned_cols=145 Identities=21% Similarity=0.284 Sum_probs=117.2
Q ss_pred CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhh
Q 009816 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPY 420 (524)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (524)
.++...+.+.+.+++.++.+++.+.++.+.||++..+.+....+...+..++-.. ..+.+..++.-++.|++-++.+
T Consensus 76 l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~---~~s~~~~ialr~llGl~es~~w 152 (495)
T KOG2533|consen 76 LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA---VHSFPGLIALRFLLGLFESGGW 152 (495)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHhcccc
Confidence 5677888999999999999999999999999999666555544444333323222 3567788888999999999999
Q ss_pred HHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcc-------cChhHHHHHHHHHHHHHHHHHH
Q 009816 421 ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISA-------TSWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-------~~~~~~~~~~~~~~~~~~~~~~ 493 (524)
|....++..-+. ++.++..+|+..+...+|+++|+.++..+.. .||++.|++-+++.++..++.+
T Consensus 153 P~~~~~lg~wy~--------~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f 224 (495)
T KOG2533|consen 153 PGVVAILGNWYG--------KSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF 224 (495)
T ss_pred hHHHHHHHhhcC--------hhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence 999999998887 3667999999999999999999999888532 2999999999998887776665
Q ss_pred HHH
Q 009816 494 RLV 496 (524)
Q Consensus 494 ~~~ 496 (524)
++.
T Consensus 225 ~~l 227 (495)
T KOG2533|consen 225 FFL 227 (495)
T ss_pred EEe
Confidence 444
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-06 Score=76.39 Aligned_cols=152 Identities=20% Similarity=0.195 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcc--
Q 009816 322 AYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGH-- 399 (524)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 399 (524)
.+.+..+-|.. ++. +|++.++...+.....++..+| ++.|.+.|++|.+.++.++.....++...+......
T Consensus 18 ~Y~Fs~yS~~L-k~~----l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i 91 (250)
T PF06813_consen 18 TYTFSAYSPQL-KSR----LGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI 91 (250)
T ss_pred ccchhhhhHHH-HHH----hCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 34444444444 444 7999999999999999998774 888999999999999999998888887776554322
Q ss_pred --hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhcccChhHH
Q 009816 400 --LSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAV 477 (524)
Q Consensus 400 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~ 477 (524)
.+.|......++.+.+.............+++| +.||++.|+.-....+++.+-..+...+.+.+...-
T Consensus 92 ~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP---------~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~f 162 (250)
T PF06813_consen 92 PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP---------RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSF 162 (250)
T ss_pred CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc---------cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHH
Confidence 234444444444444443444444455556665 567999999999999998888888777766644444
Q ss_pred HHHHHHHHHHH
Q 009816 478 FTMLMAAALIS 488 (524)
Q Consensus 478 ~~~~~~~~~~~ 488 (524)
+.+.+....+.
T Consensus 163 ll~la~~~~~v 173 (250)
T PF06813_consen 163 LLFLAVLPAVV 173 (250)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-07 Score=85.39 Aligned_cols=129 Identities=15% Similarity=0.217 Sum_probs=93.8
Q ss_pred HHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhcccc
Q 009816 120 LSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGK 199 (524)
Q Consensus 120 ~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 199 (524)
.+.-.-|.++.+++.||+|||+.|.++.+++++..++......++. ...+++.+|++.. ..+.+.+.|..|.+|.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~-~tvllf~arafis----g~fqvaYvYtPEVyPT 465 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNA-YTVLLFTARAFIS----GAFQVAYVYTPEVYPT 465 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHh----chheEEEEecCcccch
Confidence 3455668889999999999999999999999998888777522111 1223445555543 3455668899999999
Q ss_pred ccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHHHhcC
Q 009816 200 SKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVFLFLP 255 (524)
Q Consensus 200 ~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~ 255 (524)
+-|+...|..+...-+|.++.|.++ .....+-..+..+.+.+.++.++...+ +|
T Consensus 466 avRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcf-fP 519 (528)
T KOG0253|consen 466 AVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCF-FP 519 (528)
T ss_pred hhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHhee-ee
Confidence 9999999999999999999999999 333333444555556666666554444 44
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-05 Score=73.82 Aligned_cols=140 Identities=19% Similarity=0.156 Sum_probs=116.8
Q ss_pred CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhh
Q 009816 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPY 420 (524)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (524)
+|.|...+|++.++..++..+.+++..++.+|+|.++.+..+.++.+++..+=.. .+.+..+....+.|.+.+..+
T Consensus 42 ~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~----~~~~~L~~gt~l~G~gIav~n 117 (395)
T COG2807 42 LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL----GGLPLLFLGTLLAGAGIAVIN 117 (395)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHhhHHHHH
Confidence 6999999999999999999999999999999999999998888777776554321 245666777888899999999
Q ss_pred HHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHHHHHHHHH
Q 009816 421 ALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~ 493 (524)
...+..+-+++| +..+..+|++.....+++++++.+.-.+.++ +|+....+-+..++++.++.+
T Consensus 118 VLLPslIK~~Fp---------k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl 183 (395)
T COG2807 118 VLLPSLIKRDFP---------KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL 183 (395)
T ss_pred HhhhHHHHhhcc---------cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence 999999988887 6678999999999999999999988888777 699888888777776655443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.8e-06 Score=83.87 Aligned_cols=143 Identities=8% Similarity=0.018 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhh----hhhHHHH-HHHHHHHH
Q 009816 314 CLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRL----DARAITA-ASFMYCAI 388 (524)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----~~~~~~~-~~~~~~~~ 388 (524)
.-+..+........++..|+.+. .|+++..+|.++.+.-+...+.-++.|+++||. ||||..+ ++.+..++
T Consensus 17 g~~~~~~~~~~~~~~l~~fyt~~----~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i 92 (460)
T PRK11462 17 GDAASHIIFDNVMLYMMFFYTDI----FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI 92 (460)
T ss_pred chhhhhHHHHHHHHHHHHHHHHh----hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHH
Confidence 33344455556667888888888 899999999999999999999999999999974 7766554 44455555
Q ss_pred HHHHHHHhhcchh----HHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhh
Q 009816 389 PALFFYRSYGHLS----LALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPL 464 (524)
Q Consensus 389 ~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~ 464 (524)
...++.. .+..+ ..+..+..+++..++.....+..+...+..++ ++.|++..+.......+|..+++.
T Consensus 93 ~~~llf~-~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d-------~~eRt~l~s~r~~~~~iG~~~~~~ 164 (460)
T PRK11462 93 VCVLAYS-TPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITND-------PTQRISLQSWRFVLATAGGMLSTV 164 (460)
T ss_pred HHHHHHh-CCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544432 22111 23344455556666666666666666655443 577889999888888888777766
Q ss_pred hhHh
Q 009816 465 LTGY 468 (524)
Q Consensus 465 ~~g~ 468 (524)
+...
T Consensus 165 ~~~p 168 (460)
T PRK11462 165 LMMP 168 (460)
T ss_pred HHHH
Confidence 6443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-05 Score=76.60 Aligned_cols=142 Identities=19% Similarity=0.212 Sum_probs=118.7
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccc-cCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGD-RLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQM 176 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~D-r~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~ 176 (524)
||++. .|...+......|..++....|++.. |.++++...+++....++..+..++. ...+.+.+...-+
T Consensus 239 fgmsv-------~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~--~~~~~~~~~~~~~ 309 (403)
T PF03209_consen 239 FGMSV-------GETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAG--PLGSPWLFRPGVF 309 (403)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH--hcccchHHHHHHH
Confidence 88887 88999999999999999999999877 67888888888888887777665541 2467889999999
Q ss_pred HHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhc-----------CchhHHHHhHHHHHH
Q 009816 177 LAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTY-----------GWGWSFVVPGLIIAF 245 (524)
Q Consensus 177 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~-----------gwr~~f~~~~~~~~~ 245 (524)
+.|++.|.......+.+.+...+++-|..+|.+.....++..+|..+++.+.+. +|..+|.+.++..++
T Consensus 310 l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~ 389 (403)
T PF03209_consen 310 LLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA 389 (403)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887641 366677777766555
Q ss_pred HHH
Q 009816 246 VGL 248 (524)
Q Consensus 246 ~~~ 248 (524)
...
T Consensus 390 a~~ 392 (403)
T PF03209_consen 390 ALV 392 (403)
T ss_pred HHH
Confidence 533
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.9e-06 Score=79.41 Aligned_cols=149 Identities=15% Similarity=0.081 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhh----hhhHHH-HHHHHHH
Q 009816 312 ALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRL----DARAIT-AASFMYC 386 (524)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----~~~~~~-~~~~~~~ 386 (524)
...-+..++.......++..|+.+. .|+++..+|.++.+.=+...+.-++.|.++||. ||+|.. +.+.+..
T Consensus 18 g~gd~~~~~~~~~~~~yLl~fYTdv----~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~ 93 (467)
T COG2211 18 GLGDFASNFAFGIVVLYLLFFYTDV----FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPF 93 (467)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhcc----cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHH
Confidence 3444555566667778899999999 899999999999999999999999999999975 555554 4444555
Q ss_pred HHHHHHHHHhhc---chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhh
Q 009816 387 AIPALFFYRSYG---HLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGP 463 (524)
Q Consensus 387 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~ 463 (524)
++...+.....+ ........+...+.++++.....+..+..++.-.+ ++.|.+..+.-..+..+|..+..
T Consensus 94 ~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d-------~~ER~~l~s~R~~~~~~g~~l~~ 166 (467)
T COG2211 94 AIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD-------PQERASLTSWRMVFASLGGLLVA 166 (467)
T ss_pred HHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444443221 13445556667778888877777666666655443 57788888888888888877666
Q ss_pred hhhHhhcc
Q 009816 464 LLTGYISA 471 (524)
Q Consensus 464 ~~~g~l~~ 471 (524)
.+.+.+..
T Consensus 167 ~~~~plv~ 174 (467)
T COG2211 167 VLFPPLVK 174 (467)
T ss_pred HHHHHHHH
Confidence 65555543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.1e-06 Score=68.92 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhh
Q 009816 116 DLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGN 195 (524)
Q Consensus 116 ~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~ 195 (524)
.++......+++++.+.+.+++|.|+.++++.+...+-.+.... ++.+.++.+-++.|++.+..+.+...++.+
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~ 116 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------PNSYTLYPASALLGFGAALLWTAQGTYLTS 116 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHH
Confidence 35566667778888889999999999999999998866665544 788999999999999999999999999999
Q ss_pred ccccccccceehhhhhhhhhHHHHHHHHHHHhh
Q 009816 196 WFGKSKRGLIMGIWNAHTSIGNITGSLVASALL 228 (524)
Q Consensus 196 ~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~ 228 (524)
..++++|++..+++......+.++|.++..++.
T Consensus 117 ~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 117 YSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred cCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887766553
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00075 Score=67.39 Aligned_cols=263 Identities=12% Similarity=0.078 Sum_probs=144.8
Q ss_pred hhHhHHHHHHHH-HHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhcccccc-----ch-----------------
Q 009816 110 ALLGELDLAFLS-IYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGN-----VH----------------- 166 (524)
Q Consensus 110 ~~~g~~~s~~~l-~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~-----~~----------------- 166 (524)
+.+..+=....+ +..+...+-.+++++++|.+++-+....+.....++++-..+. .+
T Consensus 58 e~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~ 137 (491)
T PF03219_consen 58 EVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGF 137 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHH
Confidence 455555554444 3345577789999999999998877777666666655521110 00
Q ss_pred ----hHHHHHHHHHHHHHhhhcchh-hHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh----------cC
Q 009816 167 ----SFYYYLVVQMLAGLFQSTGWP-SVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT----------YG 231 (524)
Q Consensus 167 ----~~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~----------~g 231 (524)
+.|.+.+.-++.-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+...+.+ -.
T Consensus 138 i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~ 217 (491)
T PF03219_consen 138 IAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDA 217 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 122222333333333233333 457788999999999999999999999999999888777765 13
Q ss_pred chhHHHHhHHHHHHHH---HHHHHhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCc
Q 009816 232 WGWSFVVPGLIIAFVG---LIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGV 308 (524)
Q Consensus 232 wr~~f~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (524)
|...+.....+.++++ +.....+.+.....+... + +...+ ++++.+.....+++.++++|.+
T Consensus 218 ~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~-~-~~~~~-------------kk~k~k~s~~es~k~l~kS~yL 282 (491)
T PF03219_consen 218 WELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFY-P-SAKKK-------------KKKKPKMSLKESFKLLLKSKYL 282 (491)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc-h-hhhcc-------------cccCCCccHHHHHHHHHhCHHH
Confidence 5543322221111111 222223322111110000 0 00000 0000111134566778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 009816 309 APFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAI 388 (524)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 388 (524)
..+++...+.+..........-..+++..+++..++. -.|......++..++..++++.+.+|+|-+....+.-+.+.+
T Consensus 283 ~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysa-fmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~li 361 (491)
T PF03219_consen 283 LCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSA-FMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILI 361 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Confidence 7777776666666555555444555554222212221 123445556677777778889999999988776655444433
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.4e-06 Score=80.19 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhh-hHHHHHHHHHHH
Q 009816 309 APFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDA-RAITAASFMYCA 387 (524)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~-~~~~~~~~~~~~ 387 (524)
+...+..++....+.......=.|+++. +.+-+..-.|++.+...++..+++++.|+...|.+. |+.++.+.+++.
T Consensus 37 ~l~~~~sfl~~v~~sI~~~s~wpYl~~l---D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~ 113 (488)
T KOG2325|consen 37 YLALLNSFLVAVQFSIYLTSMWPYLQKL---DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAI 113 (488)
T ss_pred HHHHHHHHHHhhhheEEEeecchhhhhc---CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHH
Confidence 3344444444444333333444566652 147778888999999999999999999999999876 778888888888
Q ss_pred HHHHHHHH-hh-cchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhh
Q 009816 388 IPALFFYR-SY-GHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLL 465 (524)
Q Consensus 388 ~~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 465 (524)
++.++... .. ++...++.+++-++.|++.+... ..-.+++..-. .+.|.++++..+....+|.++||.+
T Consensus 114 ~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~--------~~dR~rA~a~~~~~~vlg~ilGp~~ 184 (488)
T KOG2325|consen 114 IGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADAST--------VEDRPRAFAATSGGFVLGIILGPTI 184 (488)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccC--------ccchHHHHHHhhhHHHHHHHHhHHH
Confidence 88776632 22 22356667777778887754432 33334433222 3556677776666666777777765
Q ss_pred hHhhccc--------------ChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009816 466 TGYISAT--------------SWTAVFTMLMAAALISGLLLTRLVVAEVA 501 (524)
Q Consensus 466 ~g~l~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (524)
...+... -|+.+-++++++.++..++.....+...+
T Consensus 185 q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 185 QLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 4433221 36677778877777777666655544333
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.7e-06 Score=83.78 Aligned_cols=133 Identities=20% Similarity=0.311 Sum_probs=108.1
Q ss_pred hhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHH
Q 009816 347 MAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTA 426 (524)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (524)
+.+++.+...+++.+++++.|+++|++|||+.+..+.+...++.++.... .+.....+.-++.|++.+........+
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a---~~~~~l~~GR~l~G~g~G~~~~~~piy 166 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA---PSWYQLIVGRILTGLGVGGASVLAPVY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHhccchhhhhhcchhh
Confidence 44899999999999999999999999999999999999998888887653 477888888899999999988888888
Q ss_pred HHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc---ChhHHHHHHHHHHHHHHHH
Q 009816 427 VSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT---SWTAVFTMLMAAALISGLL 491 (524)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~---~~~~~~~~~~~~~~~~~~~ 491 (524)
.+|..| ++.||...+..+....+|..++ .+.+...+. +|+..+.+..+.+++..+.
T Consensus 167 ~sEiap--------~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 167 ISEIAP--------AHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG 225 (513)
T ss_pred HhhcCC--------hhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence 887766 4788999999998888877777 555555543 6887777766665554444
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-06 Score=85.06 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=117.3
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
...|.+...-..+-.+.-++.+++..|+|+-+++.+++.+.++=.+..+.. +|.|+.+...+++|+..+..|.+.
T Consensus 406 ~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-----~n~W~vLPieilqgit~aliWaa~ 480 (618)
T KOG3762|consen 406 TLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-----QNPWMVLPIEILQGITHALIWAAI 480 (618)
T ss_pred eeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-----cCchheeeHHHHHHHHHHHHHHHH
Confidence 566766677777777888889999999999999999999999988888886 999999999999999999999999
Q ss_pred HHHHhhccccccccceehhhhhh-hhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHH
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNAH-TSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGL 248 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~ 248 (524)
.+|+++..||+-|+.+.++.+.. .++|.-+|.++||.+. .+|=|..|.+.++.+++..+
T Consensus 481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~ 541 (618)
T KOG3762|consen 481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLA 541 (618)
T ss_pred HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764 5689999999999988 57888889887776665533
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.7e-05 Score=70.19 Aligned_cols=146 Identities=10% Similarity=0.031 Sum_probs=102.3
Q ss_pred CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhh
Q 009816 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPY 420 (524)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (524)
+|++..+.+.++....+.+.+...+.|.++||+|||+.-+..+++..+.++.-. .++....++.=++.|+.....+
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~----~~~~~~L~~GRvlgGiaTSLLf 139 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH----SSNYPVLLLGRVLGGIATSLLF 139 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999988877777777765432 3566777777788899888888
Q ss_pred HHHHHHHHhhhcccccCCCCccchhHHHHHHH-hhhhhhhhhhhhhhHhhccc---ChhHHHHHHHHHHHHHHHHHH
Q 009816 421 ALITTAVSADLGTHSSLKGNSRALATVTAIID-GTGSVGAAIGPLLTGYISAT---SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i~~~~~g~l~~~---~~~~~~~~~~~~~~~~~~~~~ 493 (524)
+..-++...+-..+ .-+++..+...+... ..+.+-.+.+..++.++.+. +...+|.....+..++.+++.
T Consensus 140 S~FEsW~V~Eh~~~---g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~ 213 (354)
T PF05631_consen 140 SAFESWMVHEHNKR---GFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLIL 213 (354)
T ss_pred HHHHHHHHHHHHHc---CCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHH
Confidence 88877776654322 222344555555444 22334445555555555554 346677777766666655443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-05 Score=82.49 Aligned_cols=164 Identities=10% Similarity=0.041 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhcc
Q 009816 321 VAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRL-DARAITAASFMYCAIPALFFYRSYGH 399 (524)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (524)
.++++...+..|+.+. +|++...+..+...+....-+..+++|+++|++ |+++.+.++.++..++..++......
T Consensus 2 syYGm~aiLvlYl~~~----lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~ 77 (654)
T TIGR00926 2 SYYGMRTILVLYFLNF----LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIP 77 (654)
T ss_pred ceeecHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCc
Confidence 3456677778888776 799999888888887777778888999999975 89998888888877776665432110
Q ss_pred -----hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--
Q 009816 400 -----LSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-- 472 (524)
Q Consensus 400 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-- 472 (524)
......++.+.+..++.++.-+...+...+.+++.+ ++.+-....+.....++|+.+++.+.+++.+.
T Consensus 78 ~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~-----~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~ 152 (654)
T TIGR00926 78 SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ-----LSLRSRFFSFFYFAINAGSLISTIITPILRGDVG 152 (654)
T ss_pred ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 112234556677778888888888888887765422 24567788888888999999999999988732
Q ss_pred ------ChhHHHHHHHHHHHHHHHHHH
Q 009816 473 ------SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 473 ------~~~~~~~~~~~~~~~~~~~~~ 493 (524)
+|...|.+.+++++++.++..
T Consensus 153 ~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 153 CFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 577888888887777666554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.5e-08 Score=100.66 Aligned_cols=141 Identities=17% Similarity=0.177 Sum_probs=95.1
Q ss_pred HHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHh--ccccccch---hHHHHHHHHHHHHHhhhcchhhHHHHHh
Q 009816 120 LSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYG--IGYWGNVH---SFYYYLVVQMLAGLFQSTGWPSVVAVVG 194 (524)
Q Consensus 120 ~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~--~a~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~i~ 194 (524)
.+...++.++...+.||+|||++++.+.++.+++.+..+ .......+ ++..+.......-.......+....+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ 375 (451)
T PF00083_consen 296 GLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTA 375 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccc
Confidence 344556677777999999999999999988888777775 11111111 2222222222111111133466668889
Q ss_pred hccccccccceehhhhhhhhhHHHHHHHHHHHhhh-cCchhHHHHhHHHHHHHHHHHHHhcCCCCCC
Q 009816 195 NWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT-YGWGWSFVVPGLIIAFVGLIVFLFLPVNPES 260 (524)
Q Consensus 195 ~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~ 260 (524)
|.+|.+.|+++.++......++..+++.+...+.+ .+-...|.+.+.+.++..+..++++||+...
T Consensus 376 ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~ 442 (451)
T PF00083_consen 376 ELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGK 442 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCC
Confidence 99999999999999999999999888887766663 3324556666777777777888889987543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.4e-06 Score=63.17 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=71.9
Q ss_pred HHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHHHHHHHhhhhh
Q 009816 50 YHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLSIYAGGMFF 129 (524)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~ 129 (524)
..+.|..+.+++|.+++| .+++. ++.|++.+..++||.+|.+.
T Consensus 4 mGigRFayTplLP~M~~~------------------------------~~ls~-------~~ag~lasaNy~GYL~GAl~ 46 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQAD------------------------------GGLSL-------SQAGWLASANYLGYLVGALL 46 (85)
T ss_pred hhhHHHHHHhHhHHHHHh------------------------------cCCCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999 88887 99999999999999999999
Q ss_pred hhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHH
Q 009816 130 SGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYY 171 (524)
Q Consensus 130 ~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 171 (524)
..++.++..+++.+..+++...+..+.+++. ++++.+
T Consensus 47 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~-----~~~~~w 83 (85)
T PF06779_consen 47 ASRLPRHSRPRRLLRAGLLLTVLSTAAMALT-----HSFWLW 83 (85)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHH-----hchHHH
Confidence 9999999888999999999999999999995 666554
|
Note that many members are hypothetical proteins. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.3e-06 Score=78.58 Aligned_cols=116 Identities=16% Similarity=0.247 Sum_probs=85.7
Q ss_pred CCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHhhhh
Q 009816 342 YLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHL----SLALNIALMFITGMFVN 417 (524)
Q Consensus 342 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~ 417 (524)
++++...+.+..+..++.++|+++.|++.||+|||++.....+++.++.++..+....+ -.+++...=++.|++.+
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG 159 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG 159 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence 36677778888899999999999999999999999998888877777776443322111 23344455578899999
Q ss_pred hhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhh
Q 009816 418 GPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLL 465 (524)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 465 (524)
+-+|...++.+|... .+.||.-.+...+++..|...|..+
T Consensus 160 GDYPlSAtI~SE~an--------~~~RGa~iaavFa~Qg~GilaG~iv 199 (538)
T KOG0252|consen 160 GDYPLSATIMSESAN--------KKTRGAFIAAVFAMQGFGILAGGIV 199 (538)
T ss_pred CCCcchHHHhhhhhh--------hccccceeEEEEEecchhHhhccHH
Confidence 999998888877655 3667877777766666665555544
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.6e-05 Score=56.16 Aligned_cols=71 Identities=23% Similarity=0.337 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHH
Q 009816 310 PFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMY 385 (524)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 385 (524)
.+-...++......+...++|.|+++. |+++.+.|.+.++..+..+++.++.|.++||.++++........
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~~-----Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQL-----GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 344556777778888899999999984 99999999999999999999999999999999999887665544
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00043 Score=68.54 Aligned_cols=137 Identities=12% Similarity=0.023 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHH-Hhccc--cccchhHHHHHHHHHHHHHhhhcchhhHHHH
Q 009816 116 DLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSL-YGIGY--WGNVHSFYYYLVVQMLAGLFQSTGWPSVVAV 192 (524)
Q Consensus 116 ~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~-~~~a~--~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 192 (524)
.-...+...+..+..-.+..|+..|.=+..++++..+..++ ..+.. ......++..++.-++.|++.+.......++
T Consensus 51 ~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gl 130 (437)
T TIGR00939 51 TLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGL 130 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhh
Confidence 33444444555555555666666432233333322211111 11110 1112357777788888999998888887777
Q ss_pred HhhccccccccceehhhhhhhhhHHHHHHHHHHHhh----h---cCch-hHHHHhHHHHHHHHHHHHHhcCCC
Q 009816 193 VGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL----T---YGWG-WSFVVPGLIIAFVGLIVFLFLPVN 257 (524)
Q Consensus 193 i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~----~---~gwr-~~f~~~~~~~~~~~~~~~~~~~~~ 257 (524)
.+ .+|++ .++.+..+.+++.+++.++--... + .-++ ..|+..+.+..++.++.+..+++.
T Consensus 131 a~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~ 198 (437)
T TIGR00939 131 AG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLPKL 198 (437)
T ss_pred cc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 66 46643 345555566666655544432221 1 1111 234444444444445555555544
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00041 Score=62.71 Aligned_cols=325 Identities=12% Similarity=0.098 Sum_probs=167.0
Q ss_pred HhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHH
Q 009816 112 LGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVA 191 (524)
Q Consensus 112 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 191 (524)
.|.+.-+-.+...+..+.+..+.||+.--+=..+..++.+.+.++.+++ ++.++-+.+-.+..++.|.....-.+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs-----~s~~~sL~GV~~aSissGlGEiTFL~ 138 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFS-----NSVPMSLLGVVFASISSGLGEITFLA 138 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEec-----cchhHHHhhhhhhhhcCCcceeehhh
Confidence 4666667777888888888889998765444455566777888888887 88888888888888888776555444
Q ss_pred HHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh---cCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 009816 192 VVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT---YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEE 268 (524)
Q Consensus 192 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~---~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (524)
+ +..+++ ...+-++.+.+.+.++|..--..+.+ ++-|.+.+++..+.++.+...++.+++++.... +..++
T Consensus 139 l-ss~Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~-ptl~~ 212 (409)
T KOG3880|consen 139 L-SSRYPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYS-PTLQP 212 (409)
T ss_pred h-hccCCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccC-CCcCc
Confidence 3 333433 34556666666666777654444443 467888888888888887777777665433321 22111
Q ss_pred cccCCccccC---CCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHhhcccCCCCCC
Q 009816 269 DESLSPKKIG---EGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYW-LPFYVSHTAVDGKYLS 344 (524)
Q Consensus 269 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~ 344 (524)
+.....+... ...++...+++...+++...++. ....++-....++..+.++.- .+..+-+- ..|++
T Consensus 213 ~~~~~~~~~~~~~a~e~~sv~s~~~~~~e~~~~i~p------ll~~MvPL~~VY~~EY~INQGl~ell~F~c---~~g~s 283 (409)
T KOG3880|consen 213 STEIIPSQYLPFEAAEEKSVPSRRLGLKETLKRIKP------LLKYMVPLALVYFAEYFINQGLAELLLFPC---SHGFS 283 (409)
T ss_pred cceeccCCCCcccccccccCchhhhcHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhHhhEEecc---ccCCc
Confidence 1111100000 00000011111111111111222 222333333444444443322 22222110 02333
Q ss_pred hh---hhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhH
Q 009816 345 SE---MAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYA 421 (524)
Q Consensus 345 ~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (524)
.. +.-+....+.++..+.+-..... ++..-+.+.+...+-.+..++-......++.+...+..+.=|+..+..+.
T Consensus 284 ls~~sqYRwyqvlYQlGVFiSRSS~~~~--~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYV 361 (409)
T KOG3880|consen 284 LSKDSQYRWYQVLYQLGVFISRSSINLF--TMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYV 361 (409)
T ss_pred cchhhcchhhheeeeeeEEEEeccceEE--echHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHH
Confidence 22 23355555555444433221111 11111222222222222222222223345566666666667888788887
Q ss_pred HHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhh
Q 009816 422 LITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLT 466 (524)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~ 466 (524)
...--+.++.++ +.|--+++.......+|..++..++
T Consensus 362 NTf~~i~~e~~p--------d~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 362 NTFHNIHKETEP--------DVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred HHHHHHhhcCCc--------hHHHHhHhhheecchhhHHHHHHHh
Confidence 777777776654 4455667766666666655555443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.032 Score=54.63 Aligned_cols=261 Identities=10% Similarity=-0.048 Sum_probs=144.6
Q ss_pred hhHhHHHHHHHH-HHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccc-----------------h-----
Q 009816 110 ALLGELDLAFLS-IYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNV-----------------H----- 166 (524)
Q Consensus 110 ~~~g~~~s~~~l-~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~-----------------~----- 166 (524)
..+.++-+...+ +..+..++.+++.+++.+.+++-+-+..+....+++++...+.. +
T Consensus 61 e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~ 140 (509)
T COG3202 61 ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKW 140 (509)
T ss_pred hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcccee
Confidence 667788787777 66788899999999999999988888888877777776432110 0
Q ss_pred -----hHHHHHHHHHHHHHhhhcchh-hHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhhc--C-------
Q 009816 167 -----SFYYYLVVQMLAGLFQSTGWP-SVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTY--G------- 231 (524)
Q Consensus 167 -----~~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~--g------- 231 (524)
+.|...+.-++.-+=.+.... .-.....|.+..+|-.|..+.+..+.+++..++..+..++.+. .
T Consensus 141 ~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~ 220 (509)
T COG3202 141 FILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKD 220 (509)
T ss_pred eeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHH
Confidence 112222333333332233322 4456678889889999999999999999999988888777641 1
Q ss_pred --chhHHHHhHHHHHHHHHHHHHhcCCC-CCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCc
Q 009816 232 --WGWSFVVPGLIIAFVGLIVFLFLPVN-PESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGV 308 (524)
Q Consensus 232 --wr~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (524)
-+..+.+.+..++++ +....++.+. .+...... +....++ +++.+-....+++.+.++|-+
T Consensus 221 ~~~~~~~~vi~~~~~i~-~~l~~~~~r~il~~~~f~~-~~~~kk~--------------~~k~k~~~~~s~k~i~~SkyL 284 (509)
T COG3202 221 LLLQILFIVIVILGIIA-ILLYRYINRNVLTDPLFYL-RAKKKKK--------------KKKLKLGLIESFKMILRSKYL 284 (509)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhhcccCcchhH-HHhcccc--------------cccccCcHHHHHHHHHhhhHH
Confidence 233344444443433 2333333221 11111000 0000000 000001123456677788877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhh---hhhHHHHHHHH-HHhhhHHHHHHHhhhhhhHHHHHHHH
Q 009816 309 APFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEM---AGNLSTLFDVG-GVLGGILAGHISDRLDARAITAASFM 384 (524)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~-~~~~~~~~g~l~dr~~~~~~~~~~~~ 384 (524)
+.+.+...+.+.+...+...--.-.+.. +-...+. .|.+....++. .++...+++.+.+|.|-....++.-+
T Consensus 285 ~~ial~vl~Y~v~inLvE~~wKs~ik~~----~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPi 360 (509)
T COG3202 285 GAIALLVLAYGVSINLVEGVWKSGIKEL----YPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPL 360 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHh----cCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHH
Confidence 7777666665555444332222222222 1112222 23334444554 44556677888888887766555555
Q ss_pred HHHHHH
Q 009816 385 YCAIPA 390 (524)
Q Consensus 385 ~~~~~~ 390 (524)
...+..
T Consensus 361 v~litg 366 (509)
T COG3202 361 VMLITG 366 (509)
T ss_pred HHHHHH
Confidence 544443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00062 Score=67.67 Aligned_cols=118 Identities=12% Similarity=0.214 Sum_probs=105.1
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhh-cccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSG-HLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQM 176 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G-~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~ 176 (524)
++|++ .+.+...+.......+++++.. .+...+|-|++..+|+....+..++.+++ ++.|+++...+
T Consensus 272 f~w~~-------~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-----~~~w~~~~~~v 339 (463)
T KOG2816|consen 272 FGWNK-------KEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-----TETWMMFAAGV 339 (463)
T ss_pred cCcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-----ccchhhhHHHH
Confidence 88888 9999888888888888887777 78888999999999999999999999998 89999999888
Q ss_pred HHHHhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh
Q 009816 177 LAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL 228 (524)
Q Consensus 177 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~ 228 (524)
+.++. ....|...+.++.+.+++++|+++++.+..-.+..+++|.+-+.+.
T Consensus 340 ~~~~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 340 VVALA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred HHHhh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 88776 5678999999999999999999999999999999999998877765
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0014 Score=66.94 Aligned_cols=138 Identities=13% Similarity=0.040 Sum_probs=103.6
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccC-CchhhHHHHHHHHHHHHHHHhcccc-c-------------------cchhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRL-DLRIFLTVGMVGTGLFTSLYGIGYW-G-------------------NVHSF 168 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~a~~-~-------------------~~~~~ 168 (524)
....-..+.+.-......+.++.++|-| ||-+++.++.++..++..+..++.. + +....
T Consensus 73 ~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~ 152 (571)
T KOG1237|consen 73 GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQL 152 (571)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHH
Confidence 5566677777777888889999999965 8889999998888887655544210 0 00122
Q ss_pred HHHHHHHHHHHHhhhcchhhHHHHHhhccc---cc---cccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHH
Q 009816 169 YYYLVVQMLAGLFQSTGWPSVVAVVGNWFG---KS---KRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGL 241 (524)
Q Consensus 169 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~ 241 (524)
..++...-+..+|.|..-|...+.-+|-++ ++ .+...+.++....++|..++..+..++. +.+|.+-|.+..+
T Consensus 153 ~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~ 232 (571)
T KOG1237|consen 153 AVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTV 232 (571)
T ss_pred HHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHH
Confidence 356667777888999999999999999998 32 2336788899999999999988888875 6799999998877
Q ss_pred HHHHHH
Q 009816 242 IIAFVG 247 (524)
Q Consensus 242 ~~~~~~ 247 (524)
...+..
T Consensus 233 ~~~lai 238 (571)
T KOG1237|consen 233 LNALAI 238 (571)
T ss_pred HHHHHH
Confidence 665553
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00043 Score=68.96 Aligned_cols=153 Identities=20% Similarity=0.195 Sum_probs=102.7
Q ss_pred HHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhh----hhHH-HHHHHHHHHHHHHHHHHhhc-chhHH
Q 009816 330 PFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLD----ARAI-TAASFMYCAIPALFFYRSYG-HLSLA 403 (524)
Q Consensus 330 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~----~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 403 (524)
..|+++. +|+++.+...+.....+...+ .++.|.++|-+. |||. ++++.++..+....+..... ..+..
T Consensus 13 ~~~l~~~----l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 13 YPFLKDD----LGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHH----cCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 3456666 799999988887777665544 678899999873 4444 44555555443443333221 12344
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHH
Q 009816 404 LNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLM 482 (524)
Q Consensus 404 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~ 482 (524)
...+.+++..++........-..+.|....+ ++.+|...+....+..+|+.++..+.|.+.+. +++..|.+.+
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~------p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~ 161 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARRE------PESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA 161 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC------CchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence 4455556666666666666667777665433 33378888888899999999999999999888 8888888877
Q ss_pred HHHHHHHHHHH
Q 009816 483 AAALISGLLLT 493 (524)
Q Consensus 483 ~~~~~~~~~~~ 493 (524)
.+.++..+...
T Consensus 162 ~~~~l~~~~~~ 172 (433)
T PF03092_consen 162 ALPLLMLIVAL 172 (433)
T ss_pred HHHHHHHHHHH
Confidence 76665544444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00078 Score=59.96 Aligned_cols=242 Identities=16% Similarity=0.165 Sum_probs=111.7
Q ss_pred ccccceehhhhhhhhhHHHHHHHH--HH-Hhh---hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCC
Q 009816 200 SKRGLIMGIWNAHTSIGNITGSLV--AS-ALL---TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLS 273 (524)
Q Consensus 200 ~~r~~~~~~~~~~~~~G~~ig~~l--~~-~l~---~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (524)
++|+....+...++++|.++..+. -. -.. .-.|++.+.+.+++.++-.++..++ +..-+...++ ++++..
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if--Gk~fd~~~~~-~k~~k~- 77 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF--GKNFDIYSPK-EKQEKE- 77 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccccCcc-cccccc-
Confidence 577888888888999998886433 22 111 2369999999887776654443333 2211111111 000000
Q ss_pred ccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCCCC----hhhh
Q 009816 274 PKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAV-DGKYLS----SEMA 348 (524)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~----~~~~ 348 (524)
+...+.+....+.+|++..|...+......... ...+.+.+...... .+.+.+ ....
T Consensus 78 ----------------~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~--V~p~t~~~~~~~~~~s~~ni~~~~~~~~~ 139 (267)
T PF07672_consen 78 ----------------NSTLSKKPSYKSILKEKETWKWILIYGIWLVVV--VFPFTPSWFNILIWISPANIKSVVSGGGF 139 (267)
T ss_pred ----------------cccccccchHHHHHccchHHHHHHHHHHHheeE--EEeccchhHhHhhhcCccccccccccccc
Confidence 000112345678899999887766554332211 11111112221100 001110 1111
Q ss_pred ----hhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHH-----HHHHHHHHHHHHhhcch--hHHHHHHHHHHHHhhhh
Q 009816 349 ----GNLSTLFDVGGVLGGILAGHISDRLDARAITAASF-----MYCAIPALFFYRSYGHL--SLALNIALMFITGMFVN 417 (524)
Q Consensus 349 ----~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~ 417 (524)
.....++-.+..+|.+..|.+....-+||..+... ++..+..++.+...... ......+..++.|++.-
T Consensus 140 ~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~W 219 (267)
T PF07672_consen 140 NWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLW 219 (267)
T ss_pred chhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH
Confidence 12222333344455566677766544444333222 22222222211111111 23334455555666554
Q ss_pred hhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhh
Q 009816 418 GPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYI 469 (524)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 469 (524)
+.++... ..+++.+ ..+|+..|...|+...++++...+.-.+...+
T Consensus 220 giQ~ViL-~lPhEyK-----~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~i 265 (267)
T PF07672_consen 220 GIQGVIL-NLPHEYK-----GYNPKKIGIQFGLIWGFGYIFYTIYDIILSVI 265 (267)
T ss_pred hhhHHHh-cChhhhc-----CCCcceehhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444332 2233332 33467888888887777776665555544443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0019 Score=61.77 Aligned_cols=110 Identities=20% Similarity=0.120 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhcccCCCCCChhhhhhHHHH-HHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh----hc
Q 009816 324 TFLYWLPFYVSHTAVDGKYLSSEMAGNLSTL-FDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRS----YG 398 (524)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~----~~ 398 (524)
......|-+..+.... ...+....-+.... +++...+|.+...++-++-.|........=...+..+.+.-. ..
T Consensus 261 VTLsiFPg~~~~~~~~-~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~ 339 (406)
T KOG1479|consen 261 VTLSIFPGFCSEVKSS-GLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVV 339 (406)
T ss_pred eeeEecchhhcccccC-cccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCce
Confidence 3344567776665211 11123333444455 788888887776666544322222222111222222221110 11
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccc
Q 009816 399 HLSLALNIALMFITGMFVNGPYALITTAVSADLGTH 434 (524)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (524)
..+.++.+....++|+..|-..+......++.++++
T Consensus 340 ~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~ 375 (406)
T KOG1479|consen 340 FESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPS 375 (406)
T ss_pred ecCchHHHHHHHHHHhccchHhhheehhcCCCCChH
Confidence 245566777788888887777666677776666543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.65 E-value=7.9e-05 Score=53.67 Aligned_cols=46 Identities=22% Similarity=0.189 Sum_probs=41.0
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGT 150 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~ 150 (524)
.|+++ .|+|.+.++..+...++++++|.++||+++++.++....++
T Consensus 30 ~Gl~~-------~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 30 LGLSP-------SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 78877 99999999999999999999999999999998877665543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=63.31 Aligned_cols=154 Identities=19% Similarity=0.048 Sum_probs=90.5
Q ss_pred CCcHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHH
Q 009816 306 PGVAPFALCLFFAKLVA---YTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAAS 382 (524)
Q Consensus 306 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~ 382 (524)
|+-|.+.+...+.++.+ +..+.-...|.++. || +...+-+...++.+..++..+.+.|+.||+|-|..+.++
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~----Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg 115 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSF----YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG 115 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHH----hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence 33455555444444443 22222333455555 67 666677888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc---hhHH--HHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhh
Q 009816 383 FMYCAIPALFFYRSYGH---LSLA--LNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSV 457 (524)
Q Consensus 383 ~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 457 (524)
..+..++..+=...... +..+ +......+.+...........-....-++ +++|+++..+..+.+.+
T Consensus 116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~--------~~qra~A~~~~v~~n~L 187 (480)
T KOG2563|consen 116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFP--------PDQRAIATVLGVMGNPL 187 (480)
T ss_pred HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCC--------cchhhhhhhHHHhcchH
Confidence 88888777654332111 2222 23333333333222211111122223344 36667777777777778
Q ss_pred hhhhhhhhhHhhccc
Q 009816 458 GAAIGPLLTGYISAT 472 (524)
Q Consensus 458 g~~i~~~~~g~l~~~ 472 (524)
|.+++..+...+..+
T Consensus 188 Gvavg~llppilV~~ 202 (480)
T KOG2563|consen 188 GVAVGFLLPPILVPS 202 (480)
T ss_pred HHHHHhhccceecCC
Confidence 887777766666544
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.009 Score=54.91 Aligned_cols=101 Identities=12% Similarity=0.105 Sum_probs=71.4
Q ss_pred HHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhcccc-
Q 009816 121 SIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGK- 199 (524)
Q Consensus 121 l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~- 199 (524)
+....++++.+.+..++|.|++++++..........--. +.+..++-.-...|++.+..+..--+++++.-..
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y 142 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLE------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY 142 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc------hhHHhhccHHHhhccccccccccCcceecHHHHHH
Confidence 344445555558899999999999998887765554444 7889999999999999999988877777666432
Q ss_pred -ccc---------cceehhhhhhhhhHHHHHHHHHHHh
Q 009816 200 -SKR---------GLIMGIWNAHTSIGNITGSLVASAL 227 (524)
Q Consensus 200 -~~r---------~~~~~~~~~~~~~G~~ig~~l~~~l 227 (524)
++| .+..+.+.+.+.-+..+|..+...+
T Consensus 143 a~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 143 ANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred HHhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 334 4566666666666666665554433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.023 Score=55.98 Aligned_cols=185 Identities=19% Similarity=0.147 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHH--
Q 009816 308 VAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMY-- 385 (524)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~-- 385 (524)
.+.+.+..++..+..-...+..|.++.+. +..+..-.+..-..-.+..++.+...|.+.||..|.+........
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i----~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn 79 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISI----FPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQN 79 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHH
Confidence 35567777888888878888899999987 555655566666667777888888999999999988765443322
Q ss_pred --HHHHHHHHH--Hhhcch---hHHHH---HHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhh
Q 009816 386 --CAIPALFFY--RSYGHL---SLALN---IALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTG 455 (524)
Q Consensus 386 --~~~~~~~~~--~~~~~~---~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 455 (524)
.++++.++. ...... +.+.. .....+.|.............+.++--... ..++++.....++...-+-
T Consensus 80 ~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi-~~~~~~~La~~NA~mRRID 158 (432)
T PF06963_consen 80 LSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVI-AGGDPGALARMNATMRRID 158 (432)
T ss_pred HHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhh-cCCChhhHHHHHHHHHHHH
Confidence 112222211 111111 01111 111222222111111111111111110000 0223466677777777777
Q ss_pred hhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHHHH
Q 009816 456 SVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRLVV 497 (524)
Q Consensus 456 ~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
.+...++|.+.|.+.+. ++.....+.++..+++..+-+++..
T Consensus 159 L~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~ 201 (432)
T PF06963_consen 159 LFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLA 201 (432)
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999986 8887777777777777665554433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.017 Score=58.88 Aligned_cols=167 Identities=15% Similarity=0.181 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHH-H-HHHH
Q 009816 312 ALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFM-Y-CAIP 389 (524)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~-~-~~~~ 389 (524)
.+..++..++.........-.+... +|.+....+.+.+++.++..+|+.+++++.++..++....-..+ + ..++
T Consensus 20 ~~~~f~sg~~~L~yEv~~~r~l~~~----~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~ 95 (521)
T PRK03612 20 LAAVFVCAACGLVYELLLGTLASYL----LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLS 95 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555 68888888888898888888999888887644333322111111 1 1111
Q ss_pred HHHHHHhhcc--hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhH
Q 009816 390 ALFFYRSYGH--LSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTG 467 (524)
Q Consensus 390 ~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g 467 (524)
..++...... ..........++.++..+...|...-....... +..+...|-......+|+++|+.+.+
T Consensus 96 ~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~---------~~~g~~~g~ly~~ntlGa~~G~l~~~ 166 (521)
T PRK03612 96 ALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD---------QHLGHNVATVLAADYLGALVGGLAFP 166 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------cchhhhhhhhHhHHhHHHHHHHHHHH
Confidence 1111111110 111122333444566666665555444432211 12356667777788899999999888
Q ss_pred hhccc--ChhHHHHHHHHHHHHHHHH
Q 009816 468 YISAT--SWTAVFTMLMAAALISGLL 491 (524)
Q Consensus 468 ~l~~~--~~~~~~~~~~~~~~~~~~~ 491 (524)
.+.-. |......+.+.+.++++++
T Consensus 167 ~vLlp~lG~~~t~~~~a~l~~~~a~~ 192 (521)
T PRK03612 167 FLLLPRLGLIRTAALTGSLNLLAALV 192 (521)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 77653 6555555555554444433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0034 Score=63.85 Aligned_cols=137 Identities=17% Similarity=0.135 Sum_probs=81.0
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHH--HH-HHHHHHhccccccchhHHHHHHHHHHHHHhhhcch
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVG--TG-LFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGW 186 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~--~~-~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~ 186 (524)
.+.+.+.+++++|.++|+.+++++.++.-++.. .+-+.+ .+ ++..+...+..........++..-++.++..|+..
T Consensus 50 ~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 128 (521)
T PRK03612 50 TQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEI 128 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999988744333322 111111 11 11111111100000111223344556778888888
Q ss_pred hhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh--hcCchhHHHHhHHHHHHHHH
Q 009816 187 PSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL--TYGWGWSFVVPGLIIAFVGL 248 (524)
Q Consensus 187 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~--~~gwr~~f~~~~~~~~~~~~ 248 (524)
|....+..+.. .++-++..|-.+....+|+++|.++.+++. .+|-....++.+.+.+++++
T Consensus 129 Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 129 PLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred HHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 88777766533 234567788999999999999999888776 45644444444554444443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00061 Score=66.75 Aligned_cols=111 Identities=16% Similarity=0.230 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHHHhcccccc----chhHHHHHHHHHHHHHhhhcchhhHHHHHhhccccc---cccceehhhhhhh
Q 009816 141 IFLTVGMVGTGLFTSLYGIGYWGN----VHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKS---KRGLIMGIWNAHT 213 (524)
Q Consensus 141 ~~l~~~~~~~~~~~~~~~~a~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 213 (524)
|+++++.++..+|.++..++.... ..+.+.++++-.+.++|.|+.-|...++++|.++++ +|.+.+.+++.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567888888888888855542211 123467889999999999999999999999999865 3566788999999
Q ss_pred hhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHH
Q 009816 214 SIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFL 252 (524)
Q Consensus 214 ~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~ 252 (524)
++|..+++.+.+++. ++||.+.|.+.++..++. ++.+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~-~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLA-LIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHH-HHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHH-HHHHH
Confidence 999999999988888 689999999977655554 44433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.02 Score=47.59 Aligned_cols=106 Identities=11% Similarity=-0.003 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 009816 351 LSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSAD 430 (524)
Q Consensus 351 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (524)
-.++......+.+++.+.+.+++|.|+.+.++.+...+-..... ..+.+..+....+.|++.+..+.....++.+.
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~----~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~ 117 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF----YPNSYTLYPASALLGFGAALLWTAQGTYLTSY 117 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence 34455566667778889999999999999888877765444433 23556677788889999988888877777765
Q ss_pred hcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHh
Q 009816 431 LGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGY 468 (524)
Q Consensus 431 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~ 468 (524)
.. ++.+++..++...+...+.++|..+.-.
T Consensus 118 s~--------~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 118 ST--------EETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred CC--------HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 3566777787777777777777655433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.35 E-value=3.5e-05 Score=78.44 Aligned_cols=122 Identities=17% Similarity=0.201 Sum_probs=2.3
Q ss_pred CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-----------------------
Q 009816 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSY----------------------- 397 (524)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 397 (524)
++++..+.|++.+.+-++.++..++..++.+|.+|-|++..+.++++++.++..+..
T Consensus 33 F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~ 112 (539)
T PF03137_consen 33 FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSN 112 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccc
Confidence 899999999999999999999999999999999888888888888888776654210
Q ss_pred -c-------------------ch----hHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHh
Q 009816 398 -G-------------------HL----SLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDG 453 (524)
Q Consensus 398 -~-------------------~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 453 (524)
. .. ....+++..++.|++....++.-.+++-+.+++ +..+...|+..+
T Consensus 113 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~--------~~splYiGi~~~ 184 (539)
T PF03137_consen 113 LCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK--------KNSPLYIGILYA 184 (539)
T ss_dssp ---------------------------------------SSS--------------------------------------
T ss_pred cccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc--------ccCccchhhhhH
Confidence 0 00 012344455667777777777777777777663 556788888888
Q ss_pred hhhhhhhhhhhhhHhhc
Q 009816 454 TGSVGAAIGPLLTGYIS 470 (524)
Q Consensus 454 ~~~~g~~i~~~~~g~l~ 470 (524)
...+|-++|-.+++...
T Consensus 185 ~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 185 MSILGPALGFLLGSFCL 201 (539)
T ss_dssp -----------------
T ss_pred HhhccHHHHHHHHHHHH
Confidence 88887777766666554
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.064 Score=50.38 Aligned_cols=151 Identities=24% Similarity=0.364 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCh--hhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 009816 321 VAYTFLYWLPFYVSHTAVDGKYLSS--EMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYG 398 (524)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (524)
.........+.+..+. +.+. ...++......+...++.++.|.+.||.|||+.+..+......+.+......
T Consensus 17 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~- 90 (338)
T COG0477 17 DLGLLSPALPLLLSTL-----SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP- 90 (338)
T ss_pred hcchHHHHHHHHHHHc-----CCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc-
Confidence 3334445566666653 4444 4678888888888888889999999999998776666554333322222211
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHh-hhhhhhhhhhhhhHhhccc---Ch
Q 009816 399 HLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDG-TGSVGAAIGPLLTGYISAT---SW 474 (524)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~i~~~~~g~l~~~---~~ 474 (524)
....+...+.....|++.+...+.......+..+. + +.++...+.... ...++..++|.+.+.+... +|
T Consensus 91 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (338)
T COG0477 91 NVGLALLLILRLLQGLGGGGLLPVASALLSEWFPE--A-----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGW 163 (338)
T ss_pred cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc--h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 12344445555556777777777777777777653 0 356777777777 5677888888776666554 66
Q ss_pred hHHHHHHHHH
Q 009816 475 TAVFTMLMAA 484 (524)
Q Consensus 475 ~~~~~~~~~~ 484 (524)
+..+......
T Consensus 164 ~~~~~~~~~~ 173 (338)
T COG0477 164 RAAFLLAALL 173 (338)
T ss_pred HHHHHHHHHH
Confidence 6644444333
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.039 Score=53.53 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=99.7
Q ss_pred HHHHHHHHhhcccCCCCCChhhhhh-HHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 009816 326 LYWLPFYVSHTAVDGKYLSSEMAGN-LSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLAL 404 (524)
Q Consensus 326 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (524)
..++..|+.+. .+|++..+... ++-...-..+..-+....+.|.++.|..+++..+...+.-.++.+ .++...
T Consensus 23 EPfl~~yL~~~---~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~---~~sv~~ 96 (412)
T PF01770_consen 23 EPFLTPYLTGP---DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF---GTSVLA 96 (412)
T ss_pred CccchHHHcCC---ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HCcHHH
Confidence 35666666653 16888888764 333334445556677789999999999888887776666555543 356666
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc---ChhHHHHHH
Q 009816 405 NIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT---SWTAVFTML 481 (524)
Q Consensus 405 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~---~~~~~~~~~ 481 (524)
.-+.-++.|...+. -...++++-..+++ +..-++.+...+..-+|..++..++-.+... ++....++.
T Consensus 97 mq~~q~~yg~~~a~-evay~sYiys~v~~--------~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~is 167 (412)
T PF01770_consen 97 MQLMQFFYGLATAA-EVAYYSYIYSVVDK--------EHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYIS 167 (412)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHheeecCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 77777777776554 33344555555543 4455677777777777777777666655553 666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 009816 482 MAAALISGLLLTRLVV 497 (524)
Q Consensus 482 ~~~~~~~~~~~~~~~~ 497 (524)
.+...++.++.+++.+
T Consensus 168 l~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 168 LASVSLALLIALFLPM 183 (412)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 6655555555554433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.12 Score=51.56 Aligned_cols=119 Identities=12% Similarity=-0.023 Sum_probs=69.7
Q ss_pred ChhhhhhHHHHHHHHHHhh-hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-hcchh--------------------
Q 009816 344 SSEMAGNLSTLFDVGGVLG-GILAGHISDRLDARAITAASFMYCAIPALFFYRS-YGHLS-------------------- 401 (524)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------------- 401 (524)
+.+...++-+..-+...+. .++.+++++|++|++..............++... .+..+
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 3455666655554444444 7888999999999998766554444433332221 11111
Q ss_pred -------HHHHHHHHHHHHhhhhhhhH-HHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhc
Q 009816 402 -------LALNIALMFITGMFVNGPYA-LITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYIS 470 (524)
Q Consensus 402 -------~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 470 (524)
.|......+...+......+ .......+... .++..+-.++....+++|..+++.+..++.
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t--------~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITT--------IDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222223333333333444 33444444443 356678999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.012 Score=42.82 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009816 320 LVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYR 395 (524)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 395 (524)
..-+.++..+|...++ .++|..+.+++.+.+.++.++|.+...++.++.++++.+..+.+...+..+.+..
T Consensus 6 igRFayTplLP~M~~~-----~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 6 IGRFAYTPLLPLMQAD-----GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred hHHHHHHhHhHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677789988888 4999999999999999999999999999999877788887777777766666554
|
Note that many members are hypothetical proteins. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.011 Score=57.18 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=82.4
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
.+..+....|.+|-.++.--...+ |+ |++.+.+.+-..-..++..-+...-.++.|..++.-+..|+..|..++-.
T Consensus 281 ~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNt 356 (402)
T PF02487_consen 281 DQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNT 356 (402)
T ss_pred HHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 778888888888877764433222 33 44444333322222221111111113788999999999999999999999
Q ss_pred HHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL 228 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~ 228 (524)
...+.+-.++++|..+++....+-++|.+++.+++-.+.
T Consensus 357 F~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 357 FYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987765
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0084 Score=58.72 Aligned_cols=112 Identities=12% Similarity=0.080 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcch------hHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHH
Q 009816 377 AITAASFMYCAIPALFFYRSYGHL------SLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAI 450 (524)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 450 (524)
|++.++.++..++.+++....... ......+.+.+++++.++.-+...+...+.+++++ ++.+.+....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~-----~~~~~~~F~~ 76 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD-----DSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT-----TTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc-----hhhhhhhHHH
Confidence 455666666666666643321111 23456777888899999999999999999887643 3566778888
Q ss_pred HHhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHH
Q 009816 451 IDGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 451 ~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~ 493 (524)
.....++|..+++.+.+++.+. +|...|.+.++..+++.+...
T Consensus 77 fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 8899999999999999999977 999999999888877666544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.011 Score=61.15 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh------
Q 009816 324 TFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSY------ 397 (524)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~------ 397 (524)
++....-.-+++. ++++..+.|++...+-++..+..+...++..|.+|-+++..+.++++++.++..+..
T Consensus 114 ~y~~s~IttiErR----F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y 189 (735)
T KOG3626|consen 114 GYFNSVITTIERR----FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPY 189 (735)
T ss_pred hhhhhhhhhhhhh----cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcc
Confidence 3333344445555 899999999999999999999999999999999999998888888888777664310
Q ss_pred -------------c---------------------------ch---hHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccc
Q 009816 398 -------------G---------------------------HL---SLALNIALMFITGMFVNGPYALITTAVSADLGTH 434 (524)
Q Consensus 398 -------------~---------------------------~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (524)
+ .. .+..+++..++.|++....++.-.+++-+.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk-- 267 (735)
T KOG3626|consen 190 EYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVK-- 267 (735)
T ss_pred hhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccccccc--
Confidence 0 00 11234445667777777777777777666655
Q ss_pred ccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--------------------ChhHHHHHHHHHHHHHHHHHHH
Q 009816 435 SSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--------------------SWTAVFTMLMAAALISGLLLTR 494 (524)
Q Consensus 435 ~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--------------------~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
.+......|+..++..+|=++|-.+++..... .|...|++.+.+.++..+.++.
T Consensus 268 ------~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~ 341 (735)
T KOG3626|consen 268 ------KKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF 341 (735)
T ss_pred ------ccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567888888888888777777776665421 2445566666666666655554
Q ss_pred H
Q 009816 495 L 495 (524)
Q Consensus 495 ~ 495 (524)
+
T Consensus 342 f 342 (735)
T KOG3626|consen 342 F 342 (735)
T ss_pred C
Confidence 4
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.037 Score=53.59 Aligned_cols=144 Identities=15% Similarity=0.077 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhh----hhhhHHHHHHHHHHHHH
Q 009816 314 CLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDR----LDARAITAASFMYCAIP 389 (524)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~~~~~~~~~~ 389 (524)
..+...+....-..+++.|++.. |.+....+.+....-+.+++.+++.|..+|| +||||..+....+....
T Consensus 40 ia~Gvqf~wA~elsy~tPyl~~l-----Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~ 114 (498)
T KOG0637|consen 40 IAAGVQFGWALELSYLTPYLQSL-----GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAV 114 (498)
T ss_pred HHHHHHHHHHHHhccccHHHHHc-----CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHH
Confidence 33444445555668899999985 9999999998888888899999999999996 48888776655544433
Q ss_pred HHHHH-Hh-------hcch-------hHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhh
Q 009816 390 ALFFY-RS-------YGHL-------SLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGT 454 (524)
Q Consensus 390 ~~~~~-~~-------~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 454 (524)
.+.+. .. .... .....++..-+.-+.......+.-+...+...++++ +. ++++....+
T Consensus 115 ~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~-----~~--~Ans~f~~f 187 (498)
T KOG0637|consen 115 SLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK-----KT--RANSVFSFF 187 (498)
T ss_pred HHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh-----hh--ccchhHHHH
Confidence 33322 11 0111 111222233334445556667777777776554321 22 167777777
Q ss_pred hhhhhhhhhhhhHhh
Q 009816 455 GSVGAAIGPLLTGYI 469 (524)
Q Consensus 455 ~~~g~~i~~~~~g~l 469 (524)
..+|+.+|-.+.++.
T Consensus 188 ~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 188 MAVGNVLGYALGSYL 202 (498)
T ss_pred HHhcceeeeeccccc
Confidence 788888777666543
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.0033 Score=59.63 Aligned_cols=85 Identities=19% Similarity=0.103 Sum_probs=3.0
Q ss_pred hHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHH--HHHHHHHHhhc--------chhHHHHHHHHHHHHhhhhhh
Q 009816 350 NLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCA--IPALFFYRSYG--------HLSLALNIALMFITGMFVNGP 419 (524)
Q Consensus 350 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~ 419 (524)
.++..++++..+|+.+.++..-+..+++.+.+..+.=. +..+++.-..+ -.+.++.++..+++|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667899999999988774322113333332222211 11111110110 124455666777888887777
Q ss_pred hHHHHHHHHhhhccc
Q 009816 420 YALITTAVSADLGTH 434 (524)
Q Consensus 420 ~~~~~~~~~~~~~~~ 434 (524)
.+....+.++.++++
T Consensus 266 ~tl~m~~~p~~v~~~ 280 (309)
T PF01733_consen 266 STLAMMYAPKSVSPE 280 (309)
T ss_dssp -HHHH----------
T ss_pred hhceeeeCCCcCCHH
Confidence 777777777766643
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.17 Score=50.14 Aligned_cols=108 Identities=11% Similarity=0.098 Sum_probs=79.5
Q ss_pred HHHHHHhhhhhhhccc---ccCCchhhHHHHHHHHHHHHHHHhcccccc-------------chhHHHHHHHHHHHHHhh
Q 009816 119 FLSIYAGGMFFSGHLG---DRLDLRIFLTVGMVGTGLFTSLYGIGYWGN-------------VHSFYYYLVVQMLAGLFQ 182 (524)
Q Consensus 119 ~~l~~~~~~~~~G~l~---Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~-------------~~~~~~~~~~r~l~G~~~ 182 (524)
..++..+++.+.+.+. +++||++.+.++.++..++.++.-+..... .+++...++.-++.|++.
T Consensus 288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D 367 (461)
T KOG3098|consen 288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD 367 (461)
T ss_pred HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence 3334444455555555 568999999999998888888776642211 125678888899999999
Q ss_pred hcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHh
Q 009816 183 STGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASAL 227 (524)
Q Consensus 183 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l 227 (524)
+......+.++.+.+ +++|..+.++.-.-.+++..++-......
T Consensus 368 ~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 368 ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999 57888888888887777777665544433
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.4 Score=49.34 Aligned_cols=173 Identities=13% Similarity=0.107 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHH
Q 009816 315 LFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRL-DARAITAASFMYCAIPALFF 393 (524)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~ 393 (524)
-.+...++++....+..|+... ++.+...+.-....+........+++++++|.+ ||-+++.++.++..++...+
T Consensus 46 e~~e~~a~~g~~~nlv~ylt~~----~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~l 121 (571)
T KOG1237|consen 46 EVLERLAFFGLVSNLVTYLTLE----LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGL 121 (571)
T ss_pred HHHHHHhHhcchhHHHHHHHHH----hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677788888887 788777777777777777777788999999976 77777777766665554433
Q ss_pred HHhh------c-------c------hh---HHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHH
Q 009816 394 YRSY------G-------H------LS---LALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAII 451 (524)
Q Consensus 394 ~~~~------~-------~------~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 451 (524)
.... + . .+ ...+...+.+..++.++.-+.....-.+.+++..+ ...+....-+...
T Consensus 122 t~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~--~~~~~~~~fFnW~ 199 (571)
T KOG1237|consen 122 TLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDP--VEVKGIPSFFNWF 199 (571)
T ss_pred HHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCc--chhhCcccchhHH
Confidence 2210 0 0 01 12344455566667788888888888887773221 1123334566677
Q ss_pred HhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHH
Q 009816 452 DGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 452 ~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~ 493 (524)
....+.|..++-.+.-++.+. +|...|.+..++..++.++.+
T Consensus 200 yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 200 YFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHH
Confidence 777788888888888888777 898888888877776665544
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.88 E-value=3.2 Score=41.99 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=26.5
Q ss_pred ccchhHHHHHHHhhhhhhhhhhhhhhHhhcc
Q 009816 441 SRALATVTAIIDGTGSVGAAIGPLLTGYISA 471 (524)
Q Consensus 441 ~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 471 (524)
.++..+..++.....++|.++++.+..++.+
T Consensus 175 ~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 175 VEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999988888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.3 Score=46.18 Aligned_cols=117 Identities=10% Similarity=-0.039 Sum_probs=60.8
Q ss_pred HHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhcccc--ccc-----hhHHHHHHHHHHHHHhhhc--chhhHH--
Q 009816 122 IYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYW--GNV-----HSFYYYLVVQMLAGLFQST--GWPSVV-- 190 (524)
Q Consensus 122 ~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~--~~~-----~~~~~~~~~r~l~G~~~~~--~~~~~~-- 190 (524)
...+..++.|...|+..|+|++...+.+.-++..+++.... ... .++..+..+-++.-...+. ....+.
T Consensus 75 s~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i 154 (503)
T KOG2601|consen 75 SQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTI 154 (503)
T ss_pred HHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheE
Confidence 45567788889999999999988777664443333332100 001 2444444444433222111 111111
Q ss_pred HHHhhcc----ccc---cccceehhhhhhhhhHHHHHHHHHHHhhhc-CchhHHHH
Q 009816 191 AVVGNWF----GKS---KRGLIMGIWNAHTSIGNITGSLVASALLTY-GWGWSFVV 238 (524)
Q Consensus 191 ~~i~~~~----~~~---~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~-gwr~~f~~ 238 (524)
.+-.||. ..+ ...++.+..-..-..-.+++|.+.|.+.++ +-|..-..
T Consensus 155 ~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~ 210 (503)
T KOG2601|consen 155 LIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGT 210 (503)
T ss_pred EecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhh
Confidence 1223443 122 233334555556666778889988888754 55553333
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.6 Score=43.62 Aligned_cols=114 Identities=11% Similarity=-0.046 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccCCch--hhHHHH--HHHHHHHHHHHhcccc---c-cchhHHHHHHHHHHHHHhhhc
Q 009816 113 GELDLAFLSIYAGGMFFSGHLGDRLDLR--IFLTVG--MVGTGLFTSLYGIGYW---G-NVHSFYYYLVVQMLAGLFQST 184 (524)
Q Consensus 113 g~~~s~~~l~~~~~~~~~G~l~Dr~Grr--~~l~~~--~~~~~~~~~~~~~a~~---~-~~~~~~~~~~~r~l~G~~~~~ 184 (524)
-.....|.++=.+|..+..+..= -++| ++.+.+ =+++.-..++|..-.. + ..++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 45677788888888876654311 1222 333222 2223333334432100 0 125677788889999999999
Q ss_pred chhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHh
Q 009816 185 GWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASAL 227 (524)
Q Consensus 185 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l 227 (524)
....+..+..+..+++||..+-.+...+..+|..+|..++..+
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888876554
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.2 Score=45.06 Aligned_cols=146 Identities=11% Similarity=0.046 Sum_probs=77.3
Q ss_pred CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhh
Q 009816 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPY 420 (524)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (524)
+|+...+.|.++.......++...+.|-++||.|||+.-+.-++...++++.= .++.....++.-.+-|+..+..+
T Consensus 67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTK----hSpqYkVLmVGR~LGGiaTsLLF 142 (454)
T KOG4332|consen 67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITK----HSPQYKVLMVGRVLGGIATSLLF 142 (454)
T ss_pred cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhh----cCCceEEEeehhhhhhHHHHHHH
Confidence 68888898888777666667777788999999999986544333333333221 12333344555566677666666
Q ss_pred HHHHHHHHhhhcccccCCCCccchhHHHHHHH-hhhhhhhhhhhhhhHhhccc---ChhHHHHHHHHHHHHHHHHH
Q 009816 421 ALITTAVSADLGTHSSLKGNSRALATVTAIID-GTGSVGAAIGPLLTGYISAT---SWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i~~~~~g~l~~~---~~~~~~~~~~~~~~~~~~~~ 492 (524)
+..-++...+-.++..++ .+-.....+=.. ..+.+-.++....+..+.|. |.-.+|...+....++..+.
T Consensus 143 SaFEsWliaEHnekr~Fe--qqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvi 216 (454)
T KOG4332|consen 143 SAFESWLIAEHNEKRGFE--QQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVI 216 (454)
T ss_pred HHHHHHHHHHhhhccCCh--HhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 666555444322111111 111111111111 12233344444444455554 55556665555555554443
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.58 E-value=3.5 Score=39.34 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=88.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHH-
Q 009816 306 PGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFM- 384 (524)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~- 384 (524)
+....+.++.++..+.-=...+....|+... .|-|...++..-.+-+....+...+.|...|+..|.|.+.....
T Consensus 27 ~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L----~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~l 102 (503)
T KOG2601|consen 27 STVIFLYLGYFLTTWGDRMWEFSVSLFMILL----GGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLL 102 (503)
T ss_pred ceeehhhHHHHHhHhhHhHHHHHHHHHHHHH----cCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhh
Confidence 3344455666666666555556677777776 56566666555555566666667777889999999886543332
Q ss_pred ----HHHHHHHHHHHhhcc----hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccc-----cCCCCccchhHHHHHH
Q 009816 385 ----YCAIPALFFYRSYGH----LSLALNIALMFITGMFVNGPYALITTAVSADLGTHS-----SLKGNSRALATVTAII 451 (524)
Q Consensus 385 ----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~g~~ 451 (524)
.+..+.+++..+... .+.++...++.+.-.. +... ...+......-+++ ....++.......+..
T Consensus 103 qNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i-~aI~-~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnati 180 (503)
T KOG2601|consen 103 QNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLI-AAIA-VLASLAGTILIERDWVVVMSEGESPSVLTNMNATI 180 (503)
T ss_pred ccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHH-HHHH-HHHHhhheEEecccEEEEecCCCCHHHHhhcchhh
Confidence 122222222222111 1223333333332211 1111 11111111111100 0011112222333444
Q ss_pred HhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHH
Q 009816 452 DGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISG 489 (524)
Q Consensus 452 ~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~ 489 (524)
...-.....+.|.+.|.+... +.+......++-.++..
T Consensus 181 r~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~vsm 219 (503)
T KOG2601|consen 181 RGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALVSM 219 (503)
T ss_pred hhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHHHH
Confidence 455566778899999988877 55655555555444443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.19 E-value=16 Score=35.71 Aligned_cols=26 Identities=0% Similarity=-0.000 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHH
Q 009816 402 LALNIALMFITGMFVNGPYALITTAV 427 (524)
Q Consensus 402 ~~~~~~~~~~~g~~~~~~~~~~~~~~ 427 (524)
....++...+.+++.+..++..+...
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a 142 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLA 142 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhh
Confidence 34444455556666555555544443
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.86 E-value=15 Score=34.86 Aligned_cols=143 Identities=13% Similarity=0.082 Sum_probs=71.5
Q ss_pred CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHH----HHHHHH-HHHHHHHHHH-hhcchhHHHHHHHHHHHHh
Q 009816 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAIT----AASFMY-CAIPALFFYR-SYGHLSLALNIALMFITGM 414 (524)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~----~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 414 (524)
.|-+..+.+.+.+.+-.+.-+|+.+.-++.|.--..+.+ .++.+. +....+.+.+ .....+.+.......++|.
T Consensus 38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~ 117 (508)
T COG4262 38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV 117 (508)
T ss_pred cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 466777777777776666666776666665543222211 111111 1111111111 1222355666777788888
Q ss_pred hhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHHHHHHHH
Q 009816 415 FVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~ 492 (524)
..+.-.+..+.+....... . ....+.....-++|...+..+..++.-. |.--.-...+.+-+++++..
T Consensus 118 LVG~EiPL~mrml~~r~a~---------~-k~~~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~Nl~aAvv~ 187 (508)
T COG4262 118 LVGAEIPLLMRMLQRRQAK---------A-KDLGSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAAVVT 187 (508)
T ss_pred HHhcchHHHHHHHHHHHHH---------H-HhhhhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Confidence 8888878777776652221 1 1122222333667777776666655433 33333333344434433333
Q ss_pred H
Q 009816 493 T 493 (524)
Q Consensus 493 ~ 493 (524)
+
T Consensus 188 ~ 188 (508)
T COG4262 188 L 188 (508)
T ss_pred H
Confidence 3
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.19 E-value=22 Score=35.62 Aligned_cols=123 Identities=10% Similarity=0.025 Sum_probs=69.4
Q ss_pred CChhhhhhHHHHHHH-HHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-hc-------c-----------h--
Q 009816 343 LSSEMAGNLSTLFDV-GGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRS-YG-------H-----------L-- 400 (524)
Q Consensus 343 ~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~-----------~-- 400 (524)
.+++...++=...-+ ++++..++..++.++..+.+.............+++... .| . +
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 345555555444333 556677888899999988887655444443333332211 10 0 0
Q ss_pred --------hHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 401 --------SLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 401 --------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
+.|.........-+-.....+......+++..+ .++..+-.++.+...+++..++..+..++...
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt-------~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT-------IEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 012222222222232333344344444444443 25567889999999999999999998888774
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.51 E-value=9 Score=36.22 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=56.2
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCch-hh---HHHHHHHH-HHHHHHHhccccccchhHHHHHHHHHHHHHhhhc
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLR-IF---LTVGMVGT-GLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQST 184 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr-~~---l~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~ 184 (524)
-|.+.+.+.|...+++|+...-++.|---.- .+ +++|++.- ....+-..|+. .+.++-+.+++.-++.|.-.|.
T Consensus 43 lq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~-~~~~~~~Vly~lt~vIG~LVG~ 121 (508)
T COG4262 43 LQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFAL-ESAPSRLVLYALTAVIGVLVGA 121 (508)
T ss_pred eehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHhc
Confidence 7789999999999999999998887753222 22 12222221 11111112221 1124677888889999999999
Q ss_pred chhhHHHHHhh
Q 009816 185 GWPSVVAVVGN 195 (524)
Q Consensus 185 ~~~~~~~~i~~ 195 (524)
..|..+.++..
T Consensus 122 EiPL~mrml~~ 132 (508)
T COG4262 122 EIPLLMRMLQR 132 (508)
T ss_pred chHHHHHHHHH
Confidence 99999998877
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.55 E-value=10 Score=36.60 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHh-----hhhhhHHHHH
Q 009816 308 VAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISD-----RLDARAITAA 381 (524)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~~~~~~~~~ 381 (524)
+..+...+....... +....+|..++. .|.|-+..+.....+.=-. --++...++| |+||||..++
T Consensus 33 illLl~LYllQGiP~-GL~~~iP~lL~a-----k~vSyt~~a~fS~ay~P~s--LKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 33 ILLLLFLYLLQGIPL-GLIGAIPLLLQA-----KGVSYTSQAIFSFAYWPFS--LKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred HHHHHHHHHHcCCch-hHhhhhHHHhcC-----CCcchhhhhhhhhhhhHHH--HHHHHHhhhHHHHHHhhccccceee
Confidence 444444444444443 444488988886 4777766665443332211 1344555666 9999986544
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.30 E-value=2.5 Score=31.82 Aligned_cols=32 Identities=6% Similarity=-0.023 Sum_probs=25.8
Q ss_pred ccchhHHHHHHHhhhhhhhhhhhhhhHhhccc
Q 009816 441 SRALATVTAIIDGTGSVGAAIGPLLTGYISAT 472 (524)
Q Consensus 441 ~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 472 (524)
.+.++.+.++-...-.+++++-....||+.|+
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~ 68 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDK 68 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777788888888999999998
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=81.61 E-value=22 Score=32.31 Aligned_cols=107 Identities=19% Similarity=0.162 Sum_probs=56.4
Q ss_pred HhHHHHHHHHHHHhhhhhhhccccc-CCchhhHH----HHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcch
Q 009816 112 LGELDLAFLSIYAGGMFFSGHLGDR-LDLRIFLT----VGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGW 186 (524)
Q Consensus 112 ~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~ 186 (524)
.....-.+..|+.+|....|++... +.||+.+. .+++++.+..++...-...+..++..+++.-++.|++.=...
T Consensus 143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ 222 (267)
T PF07672_consen 143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ 222 (267)
T ss_pred hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444556777777777888887764 45665433 334444444444211111111246678888888887653333
Q ss_pred hhHHHHHhhccccccccceehhhhhhhhhHHHH
Q 009816 187 PSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNIT 219 (524)
Q Consensus 187 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i 219 (524)
+ ..-.+.+-++..++-+.--.++..+++|.++
T Consensus 223 ~-ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 223 G-VILNLPHEYKGYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred H-HHhcChhhhcCCCcceehhHHHHHHHHHHHH
Confidence 3 3344555554444444444444555555443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 524 | ||||
| 1pw4_A | 451 | Crystal Structure Of The Glycerol-3-Phosphate Trans | 3e-18 |
| >pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter From E.Coli Length = 451 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 334 bits (858), Expect = e-110
Identities = 99/505 (19%), Positives = 180/505 (35%), Gaps = 73/505 (14%)
Query: 2 GSLSEPAPQRSSRKPLGIRFLECIKGRNLSFKNHQAIVLIVTFFAYTSYHAARKTTSIVK 61
GS+ +PAP ++ I +++ + + + FF Y +Y+ RK ++
Sbjct: 1 GSIFKPAPHKARLPAAEID---------PTYRRLRWQIFLGIFFGYAAYYLVRKNFALAM 51
Query: 62 STLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFLS 121
L G++ LG
Sbjct: 52 PYLVE-------------------------------QGFSR-------GDLGFALSGISI 73
Query: 122 IYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLF 181
Y F G + DR + R+FL G++ G W S V+ L G F
Sbjct: 74 AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-SSIAVMFVLLFLCGWF 132
Query: 182 QSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT--YGWGWSFVVP 239
Q GWP + +W+ + +RG I+ +WN ++G L+ + W + +P
Sbjct: 133 QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMP 192
Query: 240 GLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGF 299
V L F + P+S G EE ++ P E + E ++ K +
Sbjct: 193 AFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNE-------KAEQELTAKQIFM 245
Query: 300 IEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGG 359
+ A+ F L+ Y L W P Y+ K+ + + + L++ G
Sbjct: 246 QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV----KHFALDKSSWAYFLYEYAG 301
Query: 360 VLGGILAGHISDRLDA--RAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVN 417
+ G +L G +SD++ R T FM A Y + +++ M + G +
Sbjct: 302 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY 361
Query: 418 GPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAI-GPLLTGYI-SATSWT 475
GP LI G H+ +A T G +G ++ + GY W
Sbjct: 362 GPVMLI--------GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD 413
Query: 476 AVFTMLMAAALISGLLLTRLVVAEV 500
F +++ ++++ +LL +++ E
Sbjct: 414 GGFMVMIGGSILAVILLIVVMIGEK 438
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 5e-11
Identities = 43/390 (11%), Positives = 111/390 (28%), Gaps = 37/390 (9%)
Query: 126 GMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGI---GYWGNVHSFYYYLVVQMLAGLFQ 182
G L D+L LR +L + G + + + I G + +V + G
Sbjct: 59 FQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118
Query: 183 STGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLI 242
+ G P+V A + +S G +G G+ + + T + F +
Sbjct: 119 NAGAPAVEAFIEKVSRRSNFE--FGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGC 176
Query: 243 IAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEA 302
+ +++F P S + +E
Sbjct: 177 ALILAVLLFFAKTDAPSSATVANAVGANHSAFSL--------------------KLALEL 216
Query: 303 WKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLG 362
++ P + +L + F + + G+ + + G ++T+ ++
Sbjct: 217 FRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQ-GTRVFGYVTTMGELLNASI 275
Query: 363 GILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYAL 422
A I +R+ + + ++ + + L + + L
Sbjct: 276 MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFE-------VPF 328
Query: 423 ITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTML 481
+ + + ++ ++ + +L G + + + + +L
Sbjct: 329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQ---LAMIFMSVLAGNMYESIGFQGAYLVL 385
Query: 482 MAAALISGLLLTRLVVAEVAAKFVESRSQS 511
AL L+ + + +
Sbjct: 386 GLVALGFTLISVFTLSGPGPLSLLRRQVNE 415
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 14/215 (6%)
Query: 317 FAKLVAYTFLY------WLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHIS 370
F + F Y + PF+ D ++S G + + +L L G +S
Sbjct: 9 FWMFGLFFFFYFFIMGAYFPFFPIWLH-DINHISKSDTGIIFAAISLFSLLFQPLFGLLS 67
Query: 371 DRL-DARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSA 429
D+L + + + A FF +G L + + G+++ + AV A
Sbjct: 68 DKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEA 127
Query: 430 DLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISG 489
+ ++ G VG A+G + G + + VF + ALI
Sbjct: 128 --FIEKVSRRSNFEFGRARMF----GCVGWALGASIVGIMFTINNQFVFWLGSGCALILA 181
Query: 490 LLLTRLVVAEVAAKFVESRSQSGNQSRSQAGVLDV 524
+LL ++ V + + + + S L++
Sbjct: 182 VLLFFAKTDAPSSATVANAVGANHSAFSLKLALEL 216
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 50/380 (13%), Positives = 101/380 (26%), Gaps = 52/380 (13%)
Query: 118 AFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWG--NVHSFYYYLVVQ 175
A+L Y F G + DR+ R + VGM ++ + S +
Sbjct: 43 AYLLTYGVSQLFYGPISDRVGRRPVILVGMS-------IFMLATLVAVTTSSLTVLIAAS 95
Query: 176 MLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLTY-GWGW 234
+ G+ G + + + +++ + N + + L+ L T W
Sbjct: 96 AMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRA 155
Query: 235 SFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEE 294
++ ++ A V + ++P E+ + LL
Sbjct: 156 CYLFLLVLCAGVTFSMARWMP--------------ETRPV----DAPRTRLLTS------ 191
Query: 295 KAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPF-YVSHTAVDGKYLSSEMAGNLST 353
+ + G + L L F + + +S +
Sbjct: 192 ----YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPI-- 245
Query: 354 LFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITG 413
G AG + R + A ++ +G +++ + +
Sbjct: 246 ---PAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALF- 301
Query: 414 MFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATS 473
F G L A S + L G + AL + L
Sbjct: 302 FFGAG--MLFPLATSGAMEPFPFLAGTAGALVGGLQN-----IGSGVLASLSAMLPQTGQ 354
Query: 474 WTAVFTMLMAAALISGLLLT 493
+ M + LI L
Sbjct: 355 GSLGLLMTLMGLLIVLCWLP 374
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 524 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.95 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.49 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.47 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.47 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.41 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.34 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.32 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.16 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=339.84 Aligned_cols=403 Identities=22% Similarity=0.382 Sum_probs=327.9
Q ss_pred ccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhH
Q 009816 33 KNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALL 112 (524)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (524)
++.+|..+...+++++..+++...++...|.+.++ + ++. .+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~-~s~-------~~~ 64 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ------------------------------G-FSR-------GDL 64 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS------------------------------T-TCS-------SCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------h-ccH-------hHH
Confidence 45678888888999999999999999999999888 7 666 889
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhc----cccccchhHHHHHHHHHHHHHhhhcchhh
Q 009816 113 GELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGI----GYWGNVHSFYYYLVVQMLAGLFQSTGWPS 188 (524)
Q Consensus 113 g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~----a~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 188 (524)
|++.+++.++..++++++|+++||+|||++++++.++.+++.+++++ + ++++.+++.|+++|++.+...+.
T Consensus 65 g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~ 139 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-----SSIAVMFVLLFLCGWFQGMGWPP 139 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH-----SSSSHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc-----ccHHHHHHHHHHHHHHhhhccch
Confidence 99999999999999999999999999999999999999999999998 7 89999999999999999999999
Q ss_pred HHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hcC-chhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 009816 189 VVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TYG-WGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTN 266 (524)
Q Consensus 189 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~g-wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (524)
..+++.|++|+++|++++++...+..+|.+++|.+++.+. .+| ||+.|++.+++.++..++.++.+||+|++....+.
T Consensus 140 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (451)
T 1pw4_A 140 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI 219 (451)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC
T ss_pred HHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh
Confidence 9999999999999999999999999999999999999876 678 99999999998888877788888887765433221
Q ss_pred cccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChh
Q 009816 267 EEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSE 346 (524)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 346 (524)
++.+....+ + .+ .+++++...+....++.+++|.++...+..++..........++|.|+++. +|+++.
T Consensus 220 ~~~~~~~~~-~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~ 288 (451)
T 1pw4_A 220 EEYKNDYPD-D-----YN-EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV----KHFALD 288 (451)
T ss_dssp TTTCCC--------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----SCCCHH
T ss_pred hhhcccccc-c-----ch-hhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHH
Confidence 111110000 0 00 000001111122246778889999988888888888889999999999987 799999
Q ss_pred hhhhHHHHHHHHHHhhhHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHH
Q 009816 347 MAGNLSTLFDVGGVLGGILAGHISDRL--DARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALIT 424 (524)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (524)
+.+++.+...++.+++.++.|++.||+ ++|+.+..+..+......++....+..+.+...+..++.|++.+...+...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (451)
T 1pw4_A 289 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIG 368 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHH
Confidence 999999999999999999999999999 998888777666553333332222223566667777788888888888778
Q ss_pred HHHHhhhcccccCCCCccchhHHHHHHHhhhhh-hhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHHHH
Q 009816 425 TAVSADLGTHSSLKGNSRALATVTAIIDGTGSV-GAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRLVV 497 (524)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
....+..| ++.++++.|+.+.+..+ |..++|.+.|++.+. +++..|++.+++.+++.++.....+
T Consensus 369 ~~~~~~~~--------~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 369 LHALELAP--------KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHTSC--------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888877 36789999999999999 999999999999998 9999999988888777666654433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=309.07 Aligned_cols=369 Identities=14% Similarity=0.096 Sum_probs=301.0
Q ss_pred cchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHh
Q 009816 34 NHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLG 113 (524)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 113 (524)
++++..+..++++++...++....++..|.+.++ +|++. .+.|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~g~s~-------~~~g 64 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQA------------------------------FTLTN-------FQAG 64 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------SCCCS-------HHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------------------------------cCCCH-------HHHH
Confidence 4556667777778888888888899999998888 88888 9999
Q ss_pred HHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHH---hccccccchhHHHHHHHHHHHHHhhhcchhhHH
Q 009816 114 ELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLY---GIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVV 190 (524)
Q Consensus 114 ~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 190 (524)
++.+.+.+++.++++++|+++||+|||++++++.++.+++.+++ +++ ++++.+++.|++.|++.+...+...
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~ 139 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI-----MNYTLFLVGLFIIAAGLGCLETAAN 139 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc-----ccHHHHHHHHHHHHhhHHHhhhhHH
Confidence 99999999999999999999999999999999999999999999 776 8999999999999999999999999
Q ss_pred HHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-hc-C-------------------------chhHHHHhHHHH
Q 009816 191 AVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-TY-G-------------------------WGWSFVVPGLII 243 (524)
Q Consensus 191 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~-g-------------------------wr~~f~~~~~~~ 243 (524)
+++.|++|+++|++++++.+.+.++|.+++|.+++.+. +. + ||+.|++.+++.
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 219 (438)
T 3o7q_A 140 PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIV 219 (438)
T ss_dssp HHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887 44 2 999998888776
Q ss_pred HHHHHHHHHh-cCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHH
Q 009816 244 AFVGLIVFLF-LPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVA 322 (524)
Q Consensus 244 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (524)
++..++.++. .||++++. ++++ +.++....+++.+++|.++...+..++.....
T Consensus 220 ~~~~~~~~~~~~p~~~~~~---~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (438)
T 3o7q_A 220 LLVALLIMLTKFPALQSDN---HSDA----------------------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ 274 (438)
T ss_dssp HHHHHHHHHCCCCCCTTTC---CCCS----------------------STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccc---cccc----------------------cccchhhhHHHHHhChHHHHHHHHHHHHHHHH
Confidence 6665443332 22222111 0000 00112345678899999999988888888888
Q ss_pred HHHHHHHHHH-HhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchh
Q 009816 323 YTFLYWLPFY-VSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLS 401 (524)
Q Consensus 323 ~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (524)
.....++|.| +++. +|+++.+++.......++.++++++.|++.||+++|+.+..+..+..+..+++... .+
T Consensus 275 ~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~ 347 (438)
T 3o7q_A 275 TACWSYLIRYAVEEI----PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---GG 347 (438)
T ss_dssp HHHHHHHHHHHHHHS----TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---CH
T ss_pred HHHHHHHHHHhhhcc----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---CC
Confidence 8889999999 8887 79999999999999999999999999999999999999888877776665554432 22
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-C-hhHHHH
Q 009816 402 LALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-S-WTAVFT 479 (524)
Q Consensus 402 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-~~~~~~ 479 (524)
.+ .....++.|++.+..++.......+.+++ + ++++.++.. ...+|+.++|.+.|++.|. + ++..|+
T Consensus 348 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 416 (438)
T 3o7q_A 348 HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQ--------D-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAEL 416 (438)
T ss_dssp HH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGG--------G-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGH
T ss_pred cH-HHHHHHHHHHHHHHHHHHHHHHHHhhccc--------c-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 22 34455777888888888888887887763 2 577777766 6779999999999999998 6 888888
Q ss_pred HHHHHHHH
Q 009816 480 MLMAAALI 487 (524)
Q Consensus 480 ~~~~~~~~ 487 (524)
+.+++.++
T Consensus 417 ~~~~~~~~ 424 (438)
T 3o7q_A 417 IPALCFAV 424 (438)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=307.07 Aligned_cols=435 Identities=12% Similarity=0.040 Sum_probs=296.2
Q ss_pred cchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCC-CCCCCchhhH
Q 009816 34 NHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAP-FNGSDGTALL 112 (524)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~ 112 (524)
++.|.+.++..++.+...+|...++.++|.+.++ ++.+. .+.+.+..+.
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~ 57 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTV------------------------------FVAPQNLSESAANSLL 57 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHH------------------------------HTGGGCCCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------hcCCCCCCcccHHHHH
Confidence 3455666666778888888988888888877766 22111 1122334778
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhcccc-------------ccchhHHHHHHHHHHHH
Q 009816 113 GELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYW-------------GNVHSFYYYLVVQMLAG 179 (524)
Q Consensus 113 g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~-------------~~~~~~~~~~~~r~l~G 179 (524)
|++.+++.+|..++++++|+++||+|||++++++.+++.+++++++++.. ...+++++++++|+++|
T Consensus 58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G 137 (491)
T 4gc0_A 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGG 137 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999985210 00289999999999999
Q ss_pred HhhhcchhhHHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh---------cCchhHHHHhHHHHHHHHHHH
Q 009816 180 LFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT---------YGWGWSFVVPGLIIAFVGLIV 250 (524)
Q Consensus 180 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~---------~gwr~~f~~~~~~~~~~~~~~ 250 (524)
++.|...+....+++|+.|+++|++..++.+.+..+|.++++.++..+.. .+||+.+.+..+..++. ++.
T Consensus 138 ~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 216 (491)
T 4gc0_A 138 IGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LML 216 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhh
Confidence 99999999999999999999999999999999999999999998877652 24788777766655554 566
Q ss_pred HHhcCCCCCCCCCCCccccccCCccccCCCcc--ccc--ccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHH-HHHHH
Q 009816 251 FLFLPVNPESVGTDTNEEDESLSPKKIGEGVT--QPL--LRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKL-VAYTF 325 (524)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 325 (524)
.+++||+|++...+.++++..+..++...... +.. .++....+++........+.++.........+..+ .....
T Consensus 217 ~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (491)
T 4gc0_A 217 LYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVV 296 (491)
T ss_dssp GGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHH
T ss_pred hhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHH
Confidence 77889999876544433332221111100000 000 00000111111122223333433333333333322 33445
Q ss_pred HHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-cchhHHH
Q 009816 326 LYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSY-GHLSLAL 404 (524)
Q Consensus 326 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 404 (524)
..+.|.+.+. .+.+...........++..+++.++.+++.||+|||+.+..+...+.++.+.+.... .......
T Consensus 297 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 371 (491)
T 4gc0_A 297 LYYAPEVFKT-----LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV 371 (491)
T ss_dssp HHHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HhcchHHHHh-----cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHH
Confidence 5566666655 477777777777888899999999999999999999998888777766655543321 1222222
Q ss_pred HHHHHHHHHhhhh-hhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-------ChhH
Q 009816 405 NIALMFITGMFVN-GPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-------SWTA 476 (524)
Q Consensus 405 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-------~~~~ 476 (524)
.++..++...+.+ +..+....+.+|.+|+ +.|+++.|+.+.++.+++.+++.+.+.+.+. ++..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt--------~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~ 443 (491)
T 4gc0_A 372 ALLSMLFYVAAFAMSWGPVCWVLLSEIFPN--------AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF 443 (491)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHSSCT--------TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhCCH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 2333333322222 3334556677777774 7789999999999999999999888776543 4455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccC
Q 009816 477 VFTMLMAAALISGLLLTRLVVAEVAAKFVESRSQSGN 513 (524)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (524)
.|++.+++++++.++.+ +..+|+|+++.||.++.-+
T Consensus 444 ~~~i~~~~~~~~~i~~~-~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 444 SYWIYGCMGVLAALFMW-KFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHHHHHHHHHHHHH-HHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHHHHHHHHHH-heecCCCCCCHHHHHHHhC
Confidence 67777777776665544 5568999998887655433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=287.62 Aligned_cols=356 Identities=14% Similarity=0.111 Sum_probs=285.7
Q ss_pred HHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCchhhHhHHHHHHH
Q 009816 41 IVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDGTALLGELDLAFL 120 (524)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~s~~~ 120 (524)
..+++..+...++...+.+..|.+.++ +|+++ .+.|++.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~g~s~-------~~~g~~~~~~~ 45 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARD------------------------------LNVRE-------GAVQSVMGAYL 45 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT------------------------------SSSTT-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH------------------------------cCCCH-------HHHHHHHHHHH
Confidence 445666677777888888888888888 88887 99999999999
Q ss_pred HHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhHHHHHhhccccc
Q 009816 121 SIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKS 200 (524)
Q Consensus 121 l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 200 (524)
++..++++++|+++||+|||++++.+.++.+++.++.+++ ++++.+++.|++.|++.+...+...+++.|++|++
T Consensus 46 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 120 (375)
T 2gfp_A 46 LTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-----SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT 120 (375)
T ss_dssp HHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH
Confidence 9999999999999999999999999999999999999997 89999999999999999999999999999999999
Q ss_pred cccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCccccccCCccccCC
Q 009816 201 KRGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGE 279 (524)
Q Consensus 201 ~r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (524)
+|++++++...+..+|..++|.+++.+. ++|||+.|++.+++.++..+...+.+||+++++++++
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 186 (375)
T 2gfp_A 121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT-------------- 186 (375)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc--------------
Confidence 9999999999999999999999999988 4699999999888777765555666676544321100
Q ss_pred CcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHH
Q 009816 280 GVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGG 359 (524)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 359 (524)
+...++++.+++|.++...+..++..........++|.|+++. +|.++.+.+.+.....++.
T Consensus 187 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~g~~~~~~~~~~ 248 (375)
T 2gfp_A 187 --------------RLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV----LGLSSMTVSILFILPIPAA 248 (375)
T ss_dssp --------------CTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH----HHHHHHHHHHHHHTHHHHH
T ss_pred --------------cHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHH
Confidence 0111234667788888888888888888888889999999886 6899999999999999999
Q ss_pred HhhhHHHHHHHhhhhhhHHHHHHHHH-HHHHHHH-HHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccC
Q 009816 360 VLGGILAGHISDRLDARAITAASFMY-CAIPALF-FYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSL 437 (524)
Q Consensus 360 ~~~~~~~g~l~dr~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (524)
+++.++.+++.||.+++.. .+... ...+... ........+.+...+..++.|++.+...+.......+..|
T Consensus 249 ~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p----- 321 (375)
T 2gfp_A 249 FFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP----- 321 (375)
T ss_dssp HHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-----
Confidence 9999999999999987322 22222 1111111 1111112344555566777788888888888888888775
Q ss_pred CCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc-ChhHHHHHH
Q 009816 438 KGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT-SWTAVFTML 481 (524)
Q Consensus 438 ~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~ 481 (524)
+.++++.|+.+....+|..++|.+.|.+.+. ++...+.+.
T Consensus 322 ----~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 322 ----FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred ----cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 4579999999999999999999999999876 666555553
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=282.66 Aligned_cols=374 Identities=13% Similarity=0.025 Sum_probs=263.9
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhccccc-CCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDR-LDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQM 176 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~ 176 (524)
+|++. .+.|++.+.+.++..++++++|+++|| +|||+++..+.++.+++.++++++ ++++.+++.|+
T Consensus 49 ~~~s~-------~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 116 (491)
T 4aps_A 49 LHITR-------ATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-----FGASALFGSII 116 (491)
T ss_dssp CCSCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-----CSTTHHHHHHH
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHH
Confidence 67776 999999999999999999999999999 899999999999999999999997 89999999999
Q ss_pred HHHHhhhcchhhHHHHHhhcccccc--ccceehhhhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHh
Q 009816 177 LAGLFQSTGWPSVVAVVGNWFGKSK--RGLIMGIWNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLF 253 (524)
Q Consensus 177 l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~ 253 (524)
++|++.+...+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+. +.|||+.|++.++..++..++.++.
T Consensus 117 l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 117 LIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988 777888899999999999999999988 5899999999877666655544444
Q ss_pred cCCCCCCCCCCCccccccCCccc----------------------cCCCccccccc--c----------hhhhhhhhhhH
Q 009816 254 LPVNPESVGTDTNEEDESLSPKK----------------------IGEGVTQPLLR--R----------ETKIEEKAVGF 299 (524)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~--~----------~~~~~~~~~~~ 299 (524)
.|+..++....+.++....+.++ ...+.+..... . ....++.....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (491)
T 4aps_A 197 GKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTS 276 (491)
T ss_dssp HHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred CcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccH
Confidence 34322211111100000000000 00000000000 0 00000000000
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHH
Q 009816 300 IEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAIT 379 (524)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~ 379 (524)
.+..+....+...+..++....+.....++|.|.++. .+.+....+.......++.+++.++.+++.||++||+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~ 352 (491)
T 4aps_A 277 TEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER----VDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS 352 (491)
T ss_dssp -----CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS----CCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH----hccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC
Confidence 1111122233444444555555566677888898886 677777888888999999999999999999999988654
Q ss_pred H-----HHHHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHH
Q 009816 380 A-----ASFMYCAIPALFFYRSY------GHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVT 448 (524)
Q Consensus 380 ~-----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 448 (524)
. .+..+.+++.+++.... ...+.++..+..++.|++.+...+.......+..|+ +.++++.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--------~~~g~~~ 424 (491)
T 4aps_A 353 SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK--------AFNSQMM 424 (491)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT--------TCSSSST
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH--------HHHHHHH
Confidence 3 44444444443332211 112445566677778888888788888888888874 6678999
Q ss_pred HHHHhhhhhhhhhhhhhhHhhcccChhHHHHHHHHHHHHHHHHHHHH
Q 009816 449 AIIDGTGSVGAAIGPLLTGYISATSWTAVFTMLMAAALISGLLLTRL 495 (524)
Q Consensus 449 g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
|+.+....+|..++|.+.+++.+.++...|...+++.+++.++.+..
T Consensus 425 g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 425 SMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888888888887777766655543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=255.48 Aligned_cols=349 Identities=13% Similarity=0.083 Sum_probs=231.6
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHH---HHHhccccccchhH-HHHHH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFT---SLYGIGYWGNVHSF-YYYLV 173 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~---~~~~~a~~~~~~~~-~~~~~ 173 (524)
+|++. .+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++. ....++ +.. ..+..
T Consensus 38 ~g~s~-------~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 105 (417)
T 2cfq_A 38 NHISK-------SDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG-----PLLQYNILV 105 (417)
T ss_dssp TCCCT-------TTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH-----HHHHTTCCH
T ss_pred hCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 77777 889999999999999999999999999999999999887765432 111221 111 11334
Q ss_pred HHHHHHHhhhcchhhHHHHHhhcccc--ccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHH
Q 009816 174 VQMLAGLFQSTGWPSVVAVVGNWFGK--SKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVF 251 (524)
Q Consensus 174 ~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~ 251 (524)
.+++.|++.+...+.....+.++.++ ++++...+.......+|..++|.+++++.+.+||+.|++.+++.++..+ ..
T Consensus 106 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~-~~ 184 (417)
T 2cfq_A 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAV-LL 184 (417)
T ss_dssp HHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHH-HS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH-HH
Confidence 55555554444444434444444433 4567778888888999999999999998878999999987766544323 33
Q ss_pred HhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 252 LFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPF 331 (524)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (524)
+..++++++.. +.+++ . ++ + + .+.....+++.+++|.++...+..++....+.....++|.
T Consensus 185 ~~~~~~~~~~~--~~~~~--~---~~-~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (417)
T 2cfq_A 185 FFAKTDAPSSA--TVANA--V---GA-N---H--------SAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFAN 245 (417)
T ss_dssp CSSCCCCSCSS--CSSSS--S---SS-C---C--------CCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCccccccc--ccccc--c---cc-c---c--------ccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333221110 00000 0 00 0 0 0001223456778888877666655555555566677888
Q ss_pred HHhhcccCCCC---CChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 009816 332 YVSHTAVDGKY---LSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIAL 408 (524)
Q Consensus 332 ~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (524)
|+.+. ++ .+....++...+..++.+++.++.+++.||++||+.+..+..+.++..+.+.. ..+.+..++.
T Consensus 246 ~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~ 318 (417)
T 2cfq_A 246 FFTSF----FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF---ATSALEVVIL 318 (417)
T ss_dssp HHHHT----SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---CCSHHHHHHH
T ss_pred HHHHH----HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHH
Confidence 88765 33 22345567777778888899999999999999999887776666554433321 2334444444
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHH-HhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHH
Q 009816 409 MFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAII-DGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAAL 486 (524)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~ 486 (524)
.++.+++.....+....+..+..| ++.+|++.++. +....+|+.++|.+.|++.+. ++...|.+.+++.+
T Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~p--------~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l 390 (417)
T 2cfq_A 319 KTLHMFEVPFLLVGCFKYITSQFE--------VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVAL 390 (417)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHSC--------HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHH
Confidence 455565555555556667777776 37789999984 888889999999999999886 78888888877776
Q ss_pred HHHHHHH
Q 009816 487 ISGLLLT 493 (524)
Q Consensus 487 ~~~~~~~ 493 (524)
++.++..
T Consensus 391 ~~~~~~~ 397 (417)
T 2cfq_A 391 GFTLISV 397 (417)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=245.25 Aligned_cols=366 Identities=11% Similarity=-0.023 Sum_probs=221.2
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccC-CchhhHHHHHHHHHHHHHHHhccccccch-hHHHHHHHHHHHHHhhhcchh
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRL-DLRIFLTVGMVGTGLFTSLYGIGYWGNVH-SFYYYLVVQMLAGLFQSTGWP 187 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~r~l~G~~~~~~~~ 187 (524)
.+.|++.+.+.++..++++++|+++||+ |||+++.++.++.+++.++++++ + +++.+++.|++.|++.+...+
T Consensus 54 ~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~ 128 (524)
T 2xut_A 54 AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-----EHSVQGFYTGLFLIALGSGGIKP 128 (524)
T ss_dssp TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-----SSCHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHhccccch
Confidence 8899999999999999999999999999 99999999999999999999987 7 999999999999999999999
Q ss_pred hHHHHHhhccccccccceehh---hhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCC
Q 009816 188 SVVAVVGNWFGKSKRGLIMGI---WNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGT 263 (524)
Q Consensus 188 ~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (524)
...+++.|++|+++|+++.+. ...+.++|..++|.+++.+. ..|||+.|++.+++.++..++.++..++.++..+.
T Consensus 129 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (524)
T 2xut_A 129 LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPE 208 (524)
T ss_dssp HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--
T ss_pred hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 999999999999999876666 89999999999999999887 57999999998877665544333322222111111
Q ss_pred CCccccccCC---ccccCCCcccc--cc----------------cc------------hhhhhhhhhhHHHH--------
Q 009816 264 DTNEEDESLS---PKKIGEGVTQP--LL----------------RR------------ETKIEEKAVGFIEA-------- 302 (524)
Q Consensus 264 ~~~~~~~~~~---~~~~~~~~~~~--~~----------------~~------------~~~~~~~~~~~~~~-------- 302 (524)
.+...+..+. ..++.....+. .. .. ....++...++++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (524)
T 2xut_A 209 PKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHP 288 (524)
T ss_dssp ------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCC
T ss_pred CccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhcccc
Confidence 0000000000 00000000000 00 00 00000000011000
Q ss_pred ---hcC-CCcHHHHHHHH---HHHHHHHHHHHHHHHHHhhcccCCCCCCh-hhhhhHHHHHHHHHHhhhHHHHHHH----
Q 009816 303 ---WKI-PGVAPFALCLF---FAKLVAYTFLYWLPFYVSHTAVDGKYLSS-EMAGNLSTLFDVGGVLGGILAGHIS---- 370 (524)
Q Consensus 303 ---~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~---- 370 (524)
.++ ++.+....... +....+......++.+..+. +.+. ...+.+.....++.+++..+.+++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (524)
T 2xut_A 289 DAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM-----VKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAI 363 (524)
T ss_dssp SSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHS-----CCCSSSCHHHHHTTSGGGHHHHGGGTTTC-----
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhc-----CCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHH
Confidence 011 22211111111 11111111122333333332 2221 2345555555555555665555543
Q ss_pred hhhhh----hHHHHHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCC
Q 009816 371 DRLDA----RAITAASFMYCAIPALFFYRSY------GHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGN 440 (524)
Q Consensus 371 dr~~~----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (524)
+|.++ ++.+..+..+.+++.+++.... ...+.++.++..++.|++.+...+.......+..|+
T Consensus 364 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~------- 436 (524)
T 2xut_A 364 ERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK------- 436 (524)
T ss_dssp -------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCT-------
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-------
Confidence 44432 2344445555444443332211 112445566677788888888888888888888774
Q ss_pred ccchhHHHHHHHhhhhhhhhhhhhhhHhhccc---Ch---------hHHHHHHHHHHHHHHHHHH
Q 009816 441 SRALATVTAIIDGTGSVGAAIGPLLTGYISAT---SW---------TAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 441 ~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~---~~---------~~~~~~~~~~~~~~~~~~~ 493 (524)
+.+|+++|+.+....+|..++|.+.|.+.+. +| ...|++.+++.+++.++..
T Consensus 437 -~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (524)
T 2xut_A 437 -AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFA 500 (524)
T ss_dssp -TCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999999874 12 2235566665555554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-13 Score=134.34 Aligned_cols=178 Identities=15% Similarity=0.196 Sum_probs=144.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhh-hhhhHHHHHHHH
Q 009816 307 GVAPFALCLFFAKLVAYTFLYWLPFYVSHT-AVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDR-LDARAITAASFM 384 (524)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~ 384 (524)
.++......++..+.++....+++.|+++. ..+++|.+..+.+++.+...++..++.++.|+++|| +|||+.+..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 455666667777778888888899998763 112259999999999999999999999999999999 899999999888
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhh
Q 009816 385 YCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPL 464 (524)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~ 464 (524)
+..++.++... .++.+..++..++.|++.+...+.....+.+.++++ .+.|+.+.++.+....+|..++|.
T Consensus 94 ~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~g~~~~~~ 164 (491)
T 4aps_A 94 LIMLGHIVLAL---PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEH------DRRRDAGFSIFVFGINLGAFIAPL 164 (491)
T ss_dssp HHHHHHHHHHS---CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC------TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcc------cccceeeehHHHHHHHHHHHHHHH
Confidence 88777766543 345666777788889999988999999999888753 244788899899999999999999
Q ss_pred hhHhhccc-ChhHHHHHHHHHHHHHHHHHH
Q 009816 465 LTGYISAT-SWTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 465 ~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~ 493 (524)
+.+++.+. +|+..|++.++..+++.++..
T Consensus 165 ~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 165 IVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999886 999999988776666555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.4e-13 Score=131.64 Aligned_cols=169 Identities=17% Similarity=0.155 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 009816 312 ALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPAL 391 (524)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 391 (524)
.+..++..+........+|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+.+++.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 106 (438)
T 3o7q_A 32 CSLFFLWAVANNLNDILLPQFQQA-----FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 334444445555666677776666 699999999999999999999999999999999999999999888887776
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhc-
Q 009816 392 FFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYIS- 470 (524)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~- 470 (524)
+.......++.+..++..++.|++.+...+....++.+..++ +.|+.+.++.+....+|..++|.+.+++.
T Consensus 107 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE--------SSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS--------TTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 663222346777788888999999999999999999888873 67899999999999999999999999988
Q ss_pred cc-C-------------------------hhHHHHHHHHHHHHHHHHHH
Q 009816 471 AT-S-------------------------WTAVFTMLMAAALISGLLLT 493 (524)
Q Consensus 471 ~~-~-------------------------~~~~~~~~~~~~~~~~~~~~ 493 (524)
+. + |+..|++.+++.++..++..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 179 SNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp TSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55 3 78888777766655544433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=135.64 Aligned_cols=174 Identities=20% Similarity=0.224 Sum_probs=137.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 009816 308 VAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCA 387 (524)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 387 (524)
++...+..++...........+|.+.++ + .+..+.+++.+...++..++.++.|+++||+|||+.+..+..+.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQ-----G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSS-----T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 3444444555555555556667766655 7 899999999999999999999999999999999999998888887
Q ss_pred HHHHHHHHhhc-chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhh
Q 009816 388 IPALFFYRSYG-HLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLT 466 (524)
Q Consensus 388 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~ 466 (524)
++.++...... ..+.+..++..++.|++.+...+....++.+.++ ++.|+++.|+.+....+|..++|.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~--------~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS--------QKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCT--------TTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCC--------chhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77766654111 2455667777888899988888888999988887 36789999999999999999999999
Q ss_pred Hhhccc-C-hhHHHHHHHHHHHHHHHHHHHH
Q 009816 467 GYISAT-S-WTAVFTMLMAAALISGLLLTRL 495 (524)
Q Consensus 467 g~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
+++.+. + |+..|++.+++.++..++....
T Consensus 176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 987766 7 9999999888777665554433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-12 Score=129.38 Aligned_cols=174 Identities=11% Similarity=0.099 Sum_probs=141.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC------CChhhhhhHHHHHHHHHHhhhHHHHHHHhhh-hhhH
Q 009816 305 IPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKY------LSSEMAGNLSTLFDVGGVLGGILAGHISDRL-DARA 377 (524)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~~~ 377 (524)
++.++.+.+..++..+.++....+++.|+++. +| +++.+.+++.+...++..++.++.|+++||+ |||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~ 86 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTA----LLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN 86 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS----CSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 35677778888888888888899999998876 68 9999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHH---HHHHhh
Q 009816 378 ITAASFMYCAIPALFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVT---AIIDGT 454 (524)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---g~~~~~ 454 (524)
.+..+.++..++.++.... ..+.+..++..++.|++.+...+.....+.+.+++ +.|+++. ++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~ 156 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIF--EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ--------SNKSLAQKAFDMFYFT 156 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST--------TTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc--------cchHHHHHHHHHHHHH
Confidence 9988888777766665442 11566677778888999888889999999998875 4445444 448888
Q ss_pred hhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHH
Q 009816 455 GSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLL 492 (524)
Q Consensus 455 ~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~ 492 (524)
..+|..++|.+.+++.+. +|+..|++.+++.+++.++.
T Consensus 157 ~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 157 INFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876 99999988877766554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-12 Score=123.76 Aligned_cols=164 Identities=14% Similarity=0.174 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 009816 311 FALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPA 390 (524)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 390 (524)
+.+..++...........+|.+.++ +|.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARD-----LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-----SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 4445555566666666777877666 69999999999999999999999999999999999999988888877776
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhc
Q 009816 391 LFFYRSYGHLSLALNIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYIS 470 (524)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 470 (524)
+.... .++.+..++..++.|++.+...+.....+.+..++ +.|+++.++.+....+|..++|.+.+++.
T Consensus 80 ~~~~~---~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 80 LVAVT---TSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYER--------TQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------SSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHH---hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH--------HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66554 24667777778888999888888888888888874 55689999999999999999999999998
Q ss_pred cc-ChhHHHHHHHHHHHHHHH
Q 009816 471 AT-SWTAVFTMLMAAALISGL 490 (524)
Q Consensus 471 ~~-~~~~~~~~~~~~~~~~~~ 490 (524)
+. +|+..|++.++..++..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 149 TMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC
T ss_pred HhccHHHHHHHHHHHHHHHHH
Confidence 87 899988887776665544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-12 Score=126.72 Aligned_cols=143 Identities=15% Similarity=0.079 Sum_probs=120.1
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
.+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.++.++. ++.+.+++..++.+++.+...+..
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ 333 (417)
T 2cfq_A 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----TSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-----CSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888999999999999999999999999988888887777775 677788888888888877777777
Q ss_pred HHHHhhccccccccceehh-hhhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCC
Q 009816 190 VAVVGNWFGKSKRGLIMGI-WNAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVN 257 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~ 257 (524)
..+++|.+|++.|+.+.++ ++....+|..++|.+++.+. +.|++..|.+.+++.++..++.++..||.
T Consensus 334 ~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 8999999999999999998 48888899999999999887 56889999988887777666555555543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.8e-11 Score=119.30 Aligned_cols=150 Identities=14% Similarity=0.157 Sum_probs=110.0
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
...........+...++.++.+++.||+|||+.++.+....+++.+..+.......++...+...-+..+.......+..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVC 391 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHH
Confidence 44555666777888899999999999999999999998888877766654321122233222222222222222345777
Q ss_pred HHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhh-------hcCchhHHHHhHHHHHHHHHHHHHhcCCCCC
Q 009816 190 VAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL-------TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPE 259 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~-------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~ 259 (524)
..+.+|.+|.+.|+.++|+......+|..+++.+...+. ..++.+.|++.++++++..+..++++||+..
T Consensus 392 ~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 392 WVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 889999999999999999999999999988887765543 2467778899899999988888999998754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 524 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 4e-25 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 9e-08 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 105 bits (263), Expect = 4e-25
Identities = 82/397 (20%), Positives = 146/397 (36%), Gaps = 26/397 (6%)
Query: 109 TALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSF 168
LG Y F G + DR + R+FL G++ L+ S
Sbjct: 58 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM-LFMGFVPWATSSI 116
Query: 169 YYYLVVQMLAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALL 228
V+ L G FQ GWP + +W+ + +RG I+ +WN ++G L+ +
Sbjct: 117 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176
Query: 229 TYGWGWS--FVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLL 286
+ W +P V L F + P+S G EE ++ P E
Sbjct: 177 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNE------- 229
Query: 287 RRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSE 346
+ E ++ K + + A+ F L+ Y L W P Y+ K+ + +
Sbjct: 230 KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV----KHFALD 285
Query: 347 MAGNLSTLFDVGGVLGGILAGHISDRLDA--RAITAASFMYCAIPALFFYRSYGHLSLAL 404
+ L++ G+ G +L G +SD++ R T FM A Y + +
Sbjct: 286 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 345
Query: 405 NIALMFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAI-GP 463
++ M + G + GP LI A T G +G ++
Sbjct: 346 DMICMIVIGFLIYGPVMLIGLHALELAPKK--------AAGTAAGFTGLFGYLGGSVAAS 397
Query: 464 LLTGYI-SATSWTAVFTMLMAAALISGLLLTRLVVAE 499
+ GY W F +++ ++++ +LL +++ E
Sbjct: 398 AIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 434
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 52.1 bits (123), Expect = 9e-08
Identities = 47/402 (11%), Positives = 106/402 (26%), Gaps = 35/402 (8%)
Query: 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFY 169
+ G + A G L D+L LR +L + G + + + I +G + +
Sbjct: 43 SDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYN 102
Query: 170 YYLVVQMLAGLFQSTGWPSVVAVVGNWFGKS-KRGLIMGIWNAHTSIGNITGSLVASALL 228
+ + AV S + G +G G+ + +
Sbjct: 103 ILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF 162
Query: 229 TYGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRR 288
T + F + + +++F P S T
Sbjct: 163 TINNQFVFWLGSGCALILAVLLFFAKTDAPSS--------------------ATVANAVG 202
Query: 289 ETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSEMA 348
+E ++ P + +L + F + + G+ +
Sbjct: 203 ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFG 262
Query: 349 GNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIAL 408
+ + + I+ A+ A + + + + L
Sbjct: 263 YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLH 322
Query: 409 MFITGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTG-SVGAAIGPLLTG 467
MF + G + IT+ R AT+ + + +L G
Sbjct: 323 MFEVPFLLVGCFKYITSQFEV------------RFSATIYLVCFCFFKQLAMIFMSVLAG 370
Query: 468 YI-SATSWTAVFTMLMAAALISGLLLTRLVVAEVAAKFVESR 508
+ + + + +L AL L+ + + +
Sbjct: 371 NMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQ 412
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 524 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.45 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.42 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.7e-41 Score=334.09 Aligned_cols=415 Identities=21% Similarity=0.384 Sum_probs=323.2
Q ss_pred ccccccchhhHHHHHHHHHHHHHhhcccccccccccCCCCCCCCcCCccchhccccchhhhhhhhcccCCCCCCCCCCCc
Q 009816 29 NLSFKNHQAIVLIVTFFAYTSYHAARKTTSIVKSTLDPQSPDTSLKSLPWRISYLQEPAESRKLSWKLGDGWAPFNGSDG 108 (524)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 108 (524)
++..+++||.++..++++++..++++..++.+.|.+. | +|++.
T Consensus 16 ~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~------------------------------~g~s~------ 58 (447)
T d1pw4a_ 16 DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-E------------------------------QGFSR------ 58 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-S------------------------------STTCS------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------------------------------hCcCH------
Confidence 3445678899999999999999999999999988774 5 67777
Q ss_pred hhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhh
Q 009816 109 TALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPS 188 (524)
Q Consensus 109 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 188 (524)
+|+|++.+++.+++.++++++|+++||+|||+++.++.++.+++.++++++... .++++.+++.|++.|++.+...+.
T Consensus 59 -~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~ 136 (447)
T d1pw4a_ 59 -GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-TSSIAVMFVLLFLCGWFQGMGWPP 136 (447)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-HSSSSHHHHHHHHHHHHHHHTHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh-hhhHHHHHHHHHHHHHhhhhhhhH
Confidence 999999999999999999999999999999999999999999999988875100 147889999999999999999999
Q ss_pred HHHHHhhccccccccceehhhhhhhhhHHHHHHHHHHHhhh--cCchhHHHHhHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 009816 189 VVAVVGNWFGKSKRGLIMGIWNAHTSIGNITGSLVASALLT--YGWGWSFVVPGLIIAFVGLIVFLFLPVNPESVGTDTN 266 (524)
Q Consensus 189 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (524)
..+++.|++|+++|++++++.+.+..+|..++|.+++.+.. .+||+.|++.+++.++..++.+++.++.|++......
T Consensus 137 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (447)
T d1pw4a_ 137 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI 216 (447)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC
T ss_pred HHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh
Confidence 99999999999999999999999999999999998887763 4899999999999988888888888887766544332
Q ss_pred cccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCChh
Q 009816 267 EEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAVDGKYLSSE 346 (524)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 346 (524)
++.+....++.. .+.+++...+....+..++++.++......++.....+....+.|.|+.+. ++++..
T Consensus 217 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 285 (447)
T d1pw4a_ 217 EEYKNDYPDDYN-------EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV----KHFALD 285 (447)
T ss_dssp TTTCCC--------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----SCCCHH
T ss_pred hhhhhhcccchh-------hccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccc----cccccc
Confidence 222111111110 011111222334456678888888888888888888889999999999988 899999
Q ss_pred hhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--HHhhcchhHHHHHHHHHHHHhhhhhhhHHHH
Q 009816 347 MAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFF--YRSYGHLSLALNIALMFITGMFVNGPYALIT 424 (524)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (524)
+.+.......++.+++.++.|++.||.++++..........+..... .......+.+...+..++.|++.+...+...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 365 (447)
T d1pw4a_ 286 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIG 365 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987654433333222222222 2222334566666777778888777777777
Q ss_pred HHHHhhhcccccCCCCccchhHHHHHHHhhhhhh-hhhhhhhhHhhccc-ChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009816 425 TAVSADLGTHSSLKGNSRALATVTAIIDGTGSVG-AAIGPLLTGYISAT-SWTAVFTMLMAAALISGLLLTRLVVAEVA 501 (524)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g-~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (524)
....+..| ++.+|++.|+.+.+.+++ ..++|.+.|++.|. |+...|++.+++.+++.++...+..+++|
T Consensus 366 ~~~~~~~p--------~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (447)
T d1pw4a_ 366 LHALELAP--------KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 436 (447)
T ss_dssp HHHHHTSC--------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88887776 377899999999888874 56689999999988 89999988887777776666555444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2e-28 Score=239.40 Aligned_cols=355 Identities=13% Similarity=0.046 Sum_probs=253.0
Q ss_pred CCCCCCCCCCchhhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHH----HH
Q 009816 98 DGWAPFNGSDGTALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYY----LV 173 (524)
Q Consensus 98 ~g~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~ 173 (524)
+|+++ +++|++.+++.+++.++++++|+++||+|||++++++..+..++..+..+. .+.... ++
T Consensus 38 ~g~s~-------~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 105 (417)
T d1pv7a_ 38 NHISK-------SDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF-----IFGPLLQYNILV 105 (417)
T ss_dssp HCCCH-------HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH-----THHHHHHTTCHH
T ss_pred cCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHHHH
Confidence 77777 999999999999999999999999999999999999999988888888775 444433 34
Q ss_pred HHHHHHHhhhcchhhHHHHHhhcccc--ccccceehhhhhhhhhHHHHHHHHHHHhhhcCchhHHHHhHHHHHHHHHHHH
Q 009816 174 VQMLAGLFQSTGWPSVVAVVGNWFGK--SKRGLIMGIWNAHTSIGNITGSLVASALLTYGWGWSFVVPGLIIAFVGLIVF 251 (524)
Q Consensus 174 ~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~ 251 (524)
.+.+.+.+.+...........+..++ +++.+..+........+..++|.+++.+.+.+|+..+...+....+..++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (417)
T d1pv7a_ 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185 (417)
T ss_dssp HHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHH
Confidence 45555555444444444444444332 3456677888888899999999999999888888888888887777777777
Q ss_pred HhcCCCCCCCCCCCccccccCCccccCCCcccccccchhhhhhhhhhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 009816 252 LFLPVNPESVGTDTNEEDESLSPKKIGEGVTQPLLRRETKIEEKAVGFIEAWKIPGVAPFALCLFFAKLVAYTFLYWLPF 331 (524)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (524)
+..++.++....++++++... +.......+..+++..+....................+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (417)
T d1pv7a_ 186 FAKTDAPSSATVANAVGANHS--------------------AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFAN 245 (417)
T ss_dssp SSCCCSCSSSCSSHHHHSCCC--------------------CCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccchhhhhhhhhhcc--------------------cccccccccccccccccchhhhhHHHHHHHHhhhccccc
Confidence 777766554432221111100 001122234444555444444444444444444444444
Q ss_pred HHhhcccCCCCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 009816 332 YVSHTAVDGKYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSYGHLSLALNIALMFI 411 (524)
Q Consensus 332 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (524)
+..... ...+.+....+.......++..++..+.+++.||.++++.+..+..+..+..+.+.. .++.+..++..++
T Consensus 246 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l 321 (417)
T d1pv7a_ 246 FFTSFF-ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF---ATSALEVVILKTL 321 (417)
T ss_dssp HHTTSS-SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT---CCCHHHHHHHHHH
T ss_pred cccccc-cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc---ccccchhhHHHHH
Confidence 443320 112345556667778888889999999999999999999998888877776665543 3566667777888
Q ss_pred HHhhhhhhhHHHHHHHHhhhcccccCCCCccchhHHHHHH-HhhhhhhhhhhhhhhHhhccc-ChhHHHHHHHHHHHHHH
Q 009816 412 TGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAII-DGTGSVGAAIGPLLTGYISAT-SWTAVFTMLMAAALISG 489 (524)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~ 489 (524)
.|++.+...+.....+.+.+|+ +.++++.|+. +....+|..++|.+.|++.|. |++..|++.+++.++..
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~ 393 (417)
T d1pv7a_ 322 HMFEVPFLLVGCFKYITSQFEV--------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT 393 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCG--------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 8999888899999999988884 6779999975 455679999999999999998 99999999888877766
Q ss_pred HHHHHHH
Q 009816 490 LLLTRLV 496 (524)
Q Consensus 490 ~~~~~~~ 496 (524)
++..+..
T Consensus 394 ~~~~~~l 400 (417)
T d1pv7a_ 394 LISVFTL 400 (417)
T ss_dssp HHHHHHS
T ss_pred HHHHHhh
Confidence 6655443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=3.8e-14 Score=136.80 Aligned_cols=143 Identities=15% Similarity=0.068 Sum_probs=129.2
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhcccccCCchhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHhhhcchhhH
Q 009816 110 ALLGELDLAFLSIYAGGMFFSGHLGDRLDLRIFLTVGMVGTGLFTSLYGIGYWGNVHSFYYYLVVQMLAGLFQSTGWPSV 189 (524)
Q Consensus 110 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 189 (524)
...+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+. ++.+.+++..++.|++.+...+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----TSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-----cccchhhHHHHHHHHHHHHHHHHH
Confidence 667788888999999999999999999999999999999999999999986 899999999999999999999999
Q ss_pred HHHHhhccccccccceehhh-hhhhhhHHHHHHHHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHhcCCC
Q 009816 190 VAVVGNWFGKSKRGLIMGIW-NAHTSIGNITGSLVASALL-TYGWGWSFVVPGLIIAFVGLIVFLFLPVN 257 (524)
Q Consensus 190 ~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~ 257 (524)
.+++.|.+|+++|+++.++. .....+|..++|.+.|++. ++||+..|++.+++.++..++..+.++++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999975 5667899999999999988 57999999999998888877777777644
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=4.8e-13 Score=130.82 Aligned_cols=147 Identities=20% Similarity=0.237 Sum_probs=119.5
Q ss_pred CCCChhhhhhHHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHhhhhhh
Q 009816 341 KYLSSEMAGNLSTLFDVGGVLGGILAGHISDRLDARAITAASFMYCAIPALFFYRSY-GHLSLALNIALMFITGMFVNGP 419 (524)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~ 419 (524)
+|++..+.|++.+...++..++.++.|+++||+|||+.+..+.++..++.++..... ...+.+..++..++.|++.+..
T Consensus 54 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 133 (447)
T d1pw4a_ 54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 133 (447)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHT
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhh
Confidence 599999999999999999999999999999999999999988888777766654321 1234456677778888888888
Q ss_pred hHHHHHHHHhhhcccccCCCCccchhHHHHHHHhhhhhhhhhhhhhhHhhccc--ChhHHHHHHHHHHHHHHHHHHHH
Q 009816 420 YALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAT--SWTAVFTMLMAAALISGLLLTRL 495 (524)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
++.....+.+.++ ++.|+++.|+.+....+|..++|.+.+.+.+. +|+..+++.+.+.++..++.+.+
T Consensus 134 ~~~~~~~i~~~~~--------~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 134 WPPCGRTMVHWWS--------QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 203 (447)
T ss_dssp HHHHHHHHHTTCT--------TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH--------hhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHh
Confidence 8888888888887 36789999999999999999999988877664 78888888877776655555443
|