Citrus Sinensis ID: 009822

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520----
Protein Sequence
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVTPDCN
Secondary Structure (PSIPRED)
ccEEEcccccccEEEEEEEEEEEccccccccccccccEEEEEEccEEEEEEccccccccccccEEEEEEcccccEEEEEEEEcccccccccccEEEEccccccccccEEEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHcccccEEEEEccEEEEEEcccccEEEEEEEcccccEEccccccccccEEEEEEEccccccccccccccccccEEEEEcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEccccccccccHHHHHHHHcccccccHHHHHHHcccccEEccccccccccccEEEEEEEEEEcccccccccEEEEEEEEEEEcccccEEEEEEEEEEcccccccEEEEEEEEEEEEEccccEEEEEEEEEEEEEEcEEEHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEEEcccccccccccccccEEEEEEcccEEEEEEEEcccccccccEEEEEccccccEEEEEEEcccccccccccEEEEEEcccHcccccEEEEccccccccccEEEEEEccccccccccccccccccHHcHcccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHcccEEEEcHHHHEEEHHHcccEEEEEEEcccHHHEEEcccccccccEEEEEEcccccccccccccccccEEEEEEEHccHHHHHHHHHHHHHHHccccHHcHHHcccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHccccHHHHHHHHHHcccccEEEccccccccccccEEEEEEEEEccccccccccEEEEEEEEEEcccccEEEEEEEEEccccccccEEEEEEEEEEEEccccccEEEEEEEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvqfkgdpqtnSAYLIKLELLAAKNLiganlngtsdpyaiitcgsekrfssmvpgsrypmwgeefnfsvdelpvQIIVTIYDWDIIWKSTVLGSVIVTVesegqtgavwytldspsgqvclhiktiklpvnasrvmngyAGANARRrasldkqgptvvhqkpgplqtiFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKviipigdideiqrsqhafinPAITIILRmgagghgvpplgspdgrvryKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAhsssiggsrrQAKIVEEtvtkpekrqpfikeEVLVGIyndvfpctaEQFFTLLFSDDSKFTNEYRaarkdsnlvmgqwhaadeydgQVREVAFRSLckspiyprdtamtesqhavlspdkkIFVFETVqqahdvpfgsyfeihgRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICtsggetnnqsstpsvtpdcn
Flexible Loop (DISEMBL)
mvqfkgdpqtnSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRahsssiggsrrqakiveetvtkpekrqpfikEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFkiktgavnkyKKEVELMLETARSYIKICTsggetnnqsstpsvtpdcn
Low Complexity Region (SEG)
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMngyaganarrraSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLeaekkekaesaLRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVTPDCN
Disordered region (IsUnstruct)
************AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGA********************GPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRT*************************************************FIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMT**QHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICT*******************
Disordered Region (DISOPRED)
*************YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVES******************CLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGA****************YKFASFWNRNHALRQLQRT****************************************VTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTN**R********************GQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET****************************
Disordered Region (DISEMBL)
********QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAE***********************KIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDT*********LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSG*****************
Disordered Region (DISPRO)
**********NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNG****N*R**ASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTM***************************************RQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKI*********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHAxxxxxxxxxxxxxxxxxxxxxKAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVTPDCN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	524	2.2.26 [Sep-21-2011]
Q9ZVT9	1020	C2 and GRAM domain-contai	no	no	0.770	0.396	0.236	1e-17
Q9FGS8	1027	C2 and GRAM domain-contai	no	no	0.877	0.447	0.202	3e-16
O42976	764	Uncharacterized membrane	yes	no	0.232	0.159	0.283	9e-11
Q5M7N9	889	Extended synaptotagmin-3	yes	no	0.240	0.141	0.313	8e-09
O43374	803	Ras GTPase-activating pro	yes	no	0.167	0.109	0.325	2e-08
C9J798	803	Putative Ras GTPase-activ	yes	no	0.167	0.109	0.325	2e-08
Q6PFQ7	802	Ras GTPase-activating pro	no	no	0.190	0.124	0.291	2e-07
Q9UPW8	1703	Protein unc-13 homolog A	no	no	0.206	0.063	0.296	5e-07
Q4KUS2	1712	Protein unc-13 homolog A	no	no	0.206	0.063	0.296	5e-07
P27715	2155	Phorbol ester/diacylglyce	no	no	0.206	0.050	0.296	5e-07

>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4

 Score = 92.0 bits (227), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 115/486 (23%), Positives = 190/486 (39%), Gaps = 82/486 (16%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
            +L+ + L+   +L   + +G  DPY + T   + R SS+      P W E F F     
Sbjct: 534 GWLLTVALIEGVDLAAVDPSGHCDPYIVFTSNGKTRTSSIKFQKSNPQWNEIFEFDAMAD 593

Query: 73  PVQII-VTIYDWDIIWKSTV-LGSVIVT-VESE-GQTGAVWYTLDSPSGQVC---LHIKT 125
           P  ++ V ++D+D  +   V LG   V  V S       VW  L     Q C   LH++ 
Sbjct: 594 PPSVLNVEVFDFDGPFDEAVSLGHAEVNFVRSNISDLADVWVPLQGKLAQACQSKLHLRI 653

Query: 126 IKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVI 185
                    V+  Y     +    + K+      Q     Q +F L  +EF+   ++C +
Sbjct: 654 FLDHTGGGDVVRDYLN---KMEKEVGKKINVRSPQTNSAFQKLFGLPQEEFLINDFTCHL 710

Query: 186 ERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQ---RSQHAFINPAITIIL- 241
           +R     GR+++SA  + F+++ F  + K      DI+EIQ    +  +  +P + + L 
Sbjct: 711 KRKMPLQGRLFLSARIVGFYASIFGNKTKFFFLWEDIEEIQVLPPTLASMGSPIVVMTLR 770

Query: 242 -------RMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKE 294
                  R+GA  H        +GR+++ F SF + N A + +    K     L  E+K 
Sbjct: 771 PNRGLDARIGAKTH------DEEGRLKFHFHSFVSFNVAQKTIMALWK--AKSLTPEQKV 822

Query: 295 KAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEE--VLVGI----YNDVFPCTA 348
           +A                    VEE     E  Q    EE  + +G+    +++VF  T 
Sbjct: 823 QA--------------------VEE-----ESEQKLQSEESGLFLGVDDVRFSEVFSLTL 857

Query: 349 E---QFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYP 405
                FF  LF             RK       Q ++   ++ +  +V  R       Y 
Sbjct: 858 PVPVSFFMELFGGG-------EVDRKAMERAGCQSYSCSPWESEKDDVYERQ-----TYY 905

Query: 406 RDT-------AMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSS 458
           RD         +T +Q   L P+K  ++ E V   H VP G YF +H R+ +E       
Sbjct: 906 RDKRISRYRGEVTSTQQKSLVPEKNGWLVEEVMTLHGVPLGDYFNLHLRYQMEESTSKPK 965

Query: 459 TIDIKV 464
           T  ++V
Sbjct: 966 TTYVRV 971

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170 OS=Arabidopsis thaliana GN=At5g50170 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 104/514 (20%), Positives = 200/514 (38%), Gaps = 54/514 (10%)

Query: 5    KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEE 64
            +G       +++ + L+   NL         DPY + TC  + R SS+   ++ P W E 
Sbjct: 530  QGVKANGKGWILTIALIKGTNLASVEATELFDPYVVFTCNGKTRTSSVKLQAQDPQWNEV 589

Query: 65   FNFSVDELPVQII-VTIYDWDIIW-KSTVLGSVIV-----TVESEGQTGAVWYTLDSPSG 117
              F   E P  ++ V ++D+D  + +   LG   +     T +             + + 
Sbjct: 590  IEFDAMEEPPSVLDVEVFDFDGPFDQGASLGHAEINFLKHTADELADLSVALVGNHAQAS 649

Query: 118  QVCLHIKTIKLPVNASRVMNGYAGANARRRAS-LDKQGPTVVHQKPGPLQTIFNLLPDEF 176
            Q  L ++      N    M  Y     +     L+ + P    QK    Q +F L  +EF
Sbjct: 650  QSKLQLRIFLENKNGVETMKDYLSKVEKEVGKKLNIRSP----QKNSAFQKLFGLPHEEF 705

Query: 177  VELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI--- 233
            +   Y+C ++R     G++++SA  + F+SN F  + K      DID+IQ     F    
Sbjct: 706  LLKEYTCYLKRKLPVQGKLFLSARIVAFYSNVFGHKTKFYFLWEDIDDIQVLPPTFASLG 765

Query: 234  NPAITIILRMGAG---GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEA 290
            +P + IIL+   G    HG       +GR+ + F SF + +   R +    K     ++ 
Sbjct: 766  SPLLLIILKKNRGLDAKHGAKS-QDDEGRLSFYFQSFVSFDATSRTIMALWKTRTLSVD- 823

Query: 291  EKKEKAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQ 350
                                  +A+IVEE     +   PF+  E  V + +D       +
Sbjct: 824  ---------------------HRAQIVEE---DQDVADPFLLPEA-VTVVSDADALMMSK 858

Query: 351  FFTLLFSDDSKFTNEYRAARKDSNLVMGQ----WHAADEYDGQVREVAFRSLC---KSPI 403
             +T     D +   +     +    +M +     +A+  ++ +   V  R L       +
Sbjct: 859  VYTCDLPCDVELVMKIFGGGELERKIMEKSGCLSYASTTWESKKPGVYERRLSYKYNHYV 918

Query: 404  YPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIK 463
                  +T +Q    +P+ + ++   +   HDVPFG +F +H R+ ++    +  T   +
Sbjct: 919  SVFGGGVTCAQQKSPAPNDEGWILNEIVALHDVPFGDHFRVHIRYEVKKAGVDCKTSKCE 978

Query: 464  VGAHFKKWCVIQF--KIKTGAVNKYKKEVELMLE 495
            V    +    I+F  +I    + K++   +++ +
Sbjct: 979  VYLKIRWLKTIKFEQRISKSIMEKFRNRFKVIFD 1012

Arabidopsis thaliana (taxid: 3702)

>sp|O42976|YGZ7_SCHPO Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC20F10.07 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 33/155 (21%)

Query: 136 MNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLP--DEFVELSYSCVIERSFLYHG 193
           ++GYA AN++R     +               IF +LP  D  ++  Y C ++R    HG
Sbjct: 185 LSGYAFANSKRNRDFHR---------------IFKVLPPEDHLID-DYGCALQRDIFLHG 228

Query: 194 RMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPL 253
           RMY+S  HICF+S+ F     ++IP+ +I  +++   A + P    I  + A        
Sbjct: 229 RMYLSESHICFNSSIFGWVTNIVIPVTEIVSVEKKSTAVVFPNAIQITTLHA-------- 280

Query: 254 GSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTML 288
                  RY FASF +R+   + +    KN H  L
Sbjct: 281 -------RYIFASFISRDTTYQLIIAIWKNTHPFL 308

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 11/137 (8%)

Query: 15  LIKLELLAAKNLIGAN------LNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS 68
           +++L L+ A++LI  +      + G SDPYA++  G++   S  +  +  P WGE + F 
Sbjct: 349 VLRLHLIEAEDLIPKDNYLKGIIRGKSDPYAVLRIGNQNFKSRTIKENLNPKWGEMYEFV 408

Query: 69  VDELPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL-DSPSGQVCLHIK 124
           V E+P Q + V +YD D   K   LGS+++ +E   Q   V  W+ L D PSG V L ++
Sbjct: 409 VHEVPGQDLEVDLYDEDPD-KDDFLGSLVIGLEGVMQDRVVDEWFPLSDVPSGSVHLRLE 467

Query: 125 TIKLPVNASRVMNGYAG 141
            + L   + ++     G
Sbjct: 468 WLSLLPKSEKLSEAKGG 484

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus tropicalis (taxid: 8364)

>sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NGTSDP+  +      R +S+V  S YP W E F F + E 
Sbjct: 132 ACRLRCSVLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKKSCYPRWNETFEFELQEG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE 100
            ++ + V  +DWD++ ++  LG V++ V+
Sbjct: 192 AMEALCVEAWDWDLVSRNDFLGKVVIDVQ 220

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis.

Homo sapiens (taxid: 9606)

>sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NGTSDP+  +      R +S+V  S YP W E F F + E 
Sbjct: 132 ACRLRCSVLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKKSCYPRWNETFEFELQEG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE 100
            ++ + V  +DWD++ ++  LG V++ V+
Sbjct: 192 AMEALCVEAWDWDLVSRNDFLGKVVIDVQ 220

Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway.

Homo sapiens (taxid: 9606)

>sp|Q6PFQ7|RASL2_MOUSE Ras GTPase-activating protein 4 OS=Mus musculus GN=Rasa4 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NG SDP+  +      + +S+V  S YP W E F+F +++ 
Sbjct: 132 ASRLRCAVLEARDLAPKDRNGASDPFVRVHYNGRTQETSVVKKSCYPRWNETFDFELEKG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTL 112
             + ++V  +DWD++ ++  LG V V V+     Q    W+ L
Sbjct: 192 ASEALLVEAWDWDLVSRNDFLGKVAVNVQRLCSAQQEEGWFRL 234

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Isoform 2 activates the Ras pathway and promotes RANKL shedding by modulating the expression of MMP14.

Mus musculus (taxid: 10090)

>sp|Q9UPW8|UN13A_HUMAN Protein unc-13 homolog A OS=Homo sapiens GN=UNC13A PE=2 SV=4

 Score = 56.6 bits (135), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 678 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 737

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 738 IKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 797

Query: 119 VCLHI 123
           + LHI
Sbjct: 798 IRLHI 802

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses (By similarity). Also involved in secretory granule priming in insulin secretion (By similarity). Interacts with FBXO45 (via SRY domain); leading to the degradation of UNC13A by the proteasome.

Homo sapiens (taxid: 9606)

>sp|Q4KUS2|UN13A_MOUSE Protein unc-13 homolog A OS=Mus musculus GN=Unc13a PE=1 SV=3

 Score = 56.6 bits (135), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 687 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 746

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 747 IKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 806

Query: 119 VCLHI 123
           + LHI
Sbjct: 807 IRLHI 811

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Also involved in secretory granule priming in insulin secretion.

Mus musculus (taxid: 10090)

>sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein unc-13 OS=Caenorhabditis elegans GN=unc-13 PE=1 SV=4

 Score = 56.6 bits (135), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 17/125 (13%)

Query: 16   IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
            I L +L A+ LI  +  G SDPY     G  KR +  +     P+W E+F+F       +
Sbjct: 1159 ITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDR 1218

Query: 76   IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
            I V ++D D   KS +           LG  ++ V +      VWY L+      + SG 
Sbjct: 1219 IKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGA 1278

Query: 119  VCLHI 123
            + LHI
Sbjct: 1279 IRLHI 1283

May form part of a signal transduction pathway, transducing the signal from diacylglycerol to effector functions. One such function could be the release of neurotransmitter from neurons.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
224121784	590	predicted protein [Populus trichocarpa]	0.996	0.884	0.803	0.0
359478193	588	PREDICTED: C2 and GRAM domain-containing	0.986	0.879	0.795	0.0
356519666	585	PREDICTED: C2 and GRAM domain-containing	0.990	0.887	0.779	0.0
356500100	584	PREDICTED: C2 and GRAM domain-containing	0.984	0.883	0.777	0.0
357475565	582	GRAM domain-containing protein [Medicago	0.986	0.888	0.764	0.0
22331873	594	C2 domain and GRAM domain-containing pro	0.952	0.840	0.742	0.0
449468844	598	PREDICTED: C2 and GRAM domain-containing	0.977	0.856	0.738	0.0
449484724	598	PREDICTED: LOW QUALITY PROTEIN: C2 and G	0.977	0.856	0.738	0.0
255582207	532	conserved hypothetical protein [Ricinus	0.839	0.827	0.855	0.0
297820804	586	C2 domain-containing protein [Arabidopsi	0.919	0.822	0.75	0.0

>gi|224121784|ref|XP_002330652.1| predicted protein [Populus trichocarpa] gi|222872256|gb|EEF09387.1| predicted protein [Populus trichocarpa]

 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/523 (80%), Positives = 452/523 (86%), Gaps = 1/523 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGD Q NSAY+IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR PM
Sbjct: 66  MGQLKGDSQANSAYIIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRNPM 125

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGA WYTLDSPSGQVC
Sbjct: 126 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAEWYTLDSPSGQVC 185

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIK+P N++R +NGYAGAN RRR S DKQGPTVVHQKPGPLQTIF+LLPDE VE S
Sbjct: 186 LHIKTIKVPANSARAVNGYAGANPRRRISSDKQGPTVVHQKPGPLQTIFSLLPDEVVEHS 245

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240
           YSC +ERSFLYHGRMYVSAW+ICFHSN FS+QMKV+IP GDIDEI+RSQHAFINPA+TII
Sbjct: 246 YSCALERSFLYHGRMYVSAWNICFHSNVFSKQMKVVIPFGDIDEIRRSQHAFINPAVTII 305

Query: 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AKNY TMLEAEKKE+AESAL
Sbjct: 306 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRGLQRAAKNYRTMLEAEKKERAESAL 365

Query: 301 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDS 360
           RAHSSSI    RQA I E+ V K  K Q FIKEEVLVGIYND+FPCTAEQFF +   D S
Sbjct: 366 RAHSSSIRSGTRQANIPEDVVQKAGKLQAFIKEEVLVGIYNDLFPCTAEQFFNICLKDGS 425

Query: 361 KFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP 420
            F NEYR+ RKDSNLVMGQWHAADEYDGQVRE+ FRSLC SP+ P DTA+TE QH VLSP
Sbjct: 426 TFINEYRSVRKDSNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAVTEWQHFVLSP 485

Query: 421 DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKT 480
           DKK  VFETVQQ HDVPFGSYFEIH RW LET  ENS  +DIK GAHFKKWCV+Q KI++
Sbjct: 486 DKKKLVFETVQQPHDVPFGSYFEIHCRWSLETNGENSCAMDIKAGAHFKKWCVMQSKIRS 545

Query: 481 GAVNKYKKEVELMLETARSYIKICTSGGETNNQ-SSTPSVTPD 522
           GA+N+YKKEV+LMLE AR+  K   S GET ++ SS+P +T D
Sbjct: 546 GAINEYKKEVDLMLEMARASAKSHMSSGETTDKSSSSPIITQD 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478193|ref|XP_002273984.2| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Vitis vinifera] gi|296084286|emb|CBI24674.3| unnamed protein product [Vitis vinifera]

 Score =  875 bits (2261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/518 (79%), Positives = 454/518 (87%), Gaps = 1/518 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGDPQTNSAY+IKLELLAAKNLIGANLNG SDPYAIITCG EKRFSSMVPGSR PM
Sbjct: 65  MGQLKGDPQTNSAYVIKLELLAAKNLIGANLNGMSDPYAIITCGEEKRFSSMVPGSRNPM 124

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVD+LPV+I VTIYDWDIIWKST+LGSV V VE+EGQTGAVWY+LDS SGQVC
Sbjct: 125 WGEEFNFSVDDLPVKINVTIYDWDIIWKSTILGSVTVPVETEGQTGAVWYSLDSTSGQVC 184

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIKLPVN+SRV+NGY+GAN RRR S DKQGPT+VHQKPGPLQTIFNL PDE VE S
Sbjct: 185 LHIKTIKLPVNSSRVLNGYSGANTRRRMSSDKQGPTLVHQKPGPLQTIFNLHPDEVVEHS 244

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240
           YSC +ERSFLYHGRMYVS WHICFHSN FS+QMKVIIP  DIDEI+RSQHAFINPAITII
Sbjct: 245 YSCALERSFLYHGRMYVSGWHICFHSNVFSKQMKVIIPFQDIDEIKRSQHAFINPAITII 304

Query: 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AKN+HTMLEAEKKE AES L
Sbjct: 305 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRTLQRFAKNFHTMLEAEKKENAESEL 364

Query: 301 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDS 360
           RAHSSSI G R QAKI E+++    + QPF+KEE L+ IYND FPCTAEQFF +L  DDS
Sbjct: 365 RAHSSSIKG-RSQAKISEDSLPTAIEFQPFVKEEALISIYNDAFPCTAEQFFNILLHDDS 423

Query: 361 KFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP 420
            + NEYR ARKD+NLV+GQWHA DEYDGQVRE+ FRSLC SP+ P DTAMTE QHAV+SP
Sbjct: 424 NYINEYRLARKDANLVVGQWHATDEYDGQVREITFRSLCTSPMCPPDTAMTEYQHAVVSP 483

Query: 421 DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKT 480
           DKK+ VFETVQQAHDVPFGS+FE+H +W LET +E+S T++IK GAHFKKWCV+Q KI++
Sbjct: 484 DKKVLVFETVQQAHDVPFGSHFEVHCKWRLETNSESSCTMEIKAGAHFKKWCVMQSKIRS 543

Query: 481 GAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPS 518
           GA+N+YKKEVE MLE ARSYIK  TSGGE  +  S+ S
Sbjct: 544 GAINEYKKEVETMLEVARSYIKSKTSGGEIEDAPSSSS 581

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519666|ref|XP_003528491.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max]

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/521 (77%), Positives = 444/521 (85%), Gaps = 2/521 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q K D Q + AYLIKLELLAAKNL+GANLNGTSDPYAIITCG+EKRFSSMVPGSR PM
Sbjct: 63  MGQSKVDSQASLAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPM 122

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVC
Sbjct: 123 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVC 182

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRAS-LDKQGPTVVHQKPGPLQTIFNLLPDEFVEL 179
           LHIKTIKL  NASR+ NGY GAN RRR   L+ QGPTVVHQKPGPLQTIF L PDE V+ 
Sbjct: 183 LHIKTIKLSGNASRI-NGYGGANPRRRMPPLESQGPTVVHQKPGPLQTIFGLHPDEVVDH 241

Query: 180 SYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITI 239
           SYSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKV+IP  DIDEI+RSQHAFINPAITI
Sbjct: 242 SYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITI 301

Query: 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESA 299
           ILRMGAGGHGVPPLGSPDGRVRY FASFWNRNHALR LQR AKN+H MLEAEKKE AES 
Sbjct: 302 ILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHALRNLQRAAKNFHEMLEAEKKENAESE 361

Query: 300 LRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDD 359
           LRAHSSS+ G++   K  EE++ K  + QPF+KEE LVGIYN+VFPCTAEQFF LL +D 
Sbjct: 362 LRAHSSSVRGNKILDKAPEESMPKTGRLQPFVKEEALVGIYNEVFPCTAEQFFNLLLNDG 421

Query: 360 SKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 419
           S FT++YR+ RKD+NLVMGQWH ADEYDGQVRE+ FRSLC SP+ P DTAMTE QH VLS
Sbjct: 422 SNFTSKYRSVRKDTNLVMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLS 481

Query: 420 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIK 479
            DKK  VFETVQQAHDVPFGSYFE+H +W LETI E S T+DIKVGAHFKKWCV+Q KIK
Sbjct: 482 LDKKNLVFETVQQAHDVPFGSYFEVHCKWSLETINEISCTLDIKVGAHFKKWCVMQSKIK 541

Query: 480 TGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVT 520
           +GAVN+YKKEV++ML+ ARSYIK  T   E +  SS P+ T
Sbjct: 542 SGAVNEYKKEVDVMLDVARSYIKSNTPNDEDDKASSPPAAT 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500100|ref|XP_003518872.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max]

 Score =  839 bits (2168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/518 (77%), Positives = 442/518 (85%), Gaps = 2/518 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q K D Q +SAYLIKLELLAAKNL+GANLNGTSDPYAIITCG+EKRFSSMVPGSR PM
Sbjct: 61  MGQSKVDSQASSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPM 120

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVC
Sbjct: 121 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVC 180

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRAS-LDKQGPTVVHQKPGPLQTIFNLLPDEFVEL 179
           L IKTIKL  NASR+ NGY GAN RRR   L++Q PTVVHQKPGPLQTIF+L PDE V+ 
Sbjct: 181 LLIKTIKLSGNASRI-NGYGGANPRRRMPPLERQWPTVVHQKPGPLQTIFDLHPDEVVDH 239

Query: 180 SYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITI 239
           SYSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKV+IP  DIDEI+RSQHAFINPAITI
Sbjct: 240 SYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITI 299

Query: 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESA 299
           ILRMGAGGHGVPPLGSPDGRVRY FASFWNRNHA R LQR AKN+H MLEAEKKE AES 
Sbjct: 300 ILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAFRNLQRAAKNFHEMLEAEKKENAESE 359

Query: 300 LRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDD 359
           LRAHSSS+ G++   K  EE++ K  K QPF+KEE LVGIYN+VFPCTAEQFF LL +D 
Sbjct: 360 LRAHSSSVRGNKILDKAPEESMPKTGKLQPFVKEEALVGIYNEVFPCTAEQFFNLLLNDG 419

Query: 360 SKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 419
           S FT++YR+ RKD+NL+MGQWH ADEYDGQVRE+ FRSLC SP+ P DTAMTE QH VLS
Sbjct: 420 SNFTSKYRSVRKDTNLLMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLS 479

Query: 420 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIK 479
           PDK   VFETVQQAHDVPFGSYFE+H +W LETI E S T+DIKVGAHFKKWCV+Q KIK
Sbjct: 480 PDKTNLVFETVQQAHDVPFGSYFEVHCKWSLETINETSCTLDIKVGAHFKKWCVMQSKIK 539

Query: 480 TGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTP 517
           +GAVN+YKKEV++ML+ ARSYIK  T   E +  SS P
Sbjct: 540 SGAVNEYKKEVDVMLDVARSYIKSNTPNDEDDKASSPP 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475565|ref|XP_003608068.1| GRAM domain-containing protein [Medicago truncatula] gi|355509123|gb|AES90265.1| GRAM domain-containing protein [Medicago truncatula]

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/518 (76%), Positives = 437/518 (84%), Gaps = 1/518 (0%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
           Q +GD Q  SAYLIKLELLAAKNLI ANLNGTSDPY IITCG+EKRFSSMVPGSR PMWG
Sbjct: 63  QSRGDSQAGSAYLIKLELLAAKNLIAANLNGTSDPYTIITCGNEKRFSSMVPGSRNPMWG 122

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVCLH
Sbjct: 123 EEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLH 182

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           IKT K+  N++R+ NGY GAN RRR  L+KQ PTVVHQKPGPLQTIF L PDE V+ SYS
Sbjct: 183 IKTEKMSANSARI-NGYGGANTRRRIPLEKQEPTVVHQKPGPLQTIFELHPDEVVDHSYS 241

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR 242
           C +ERSFLYHGRMYVS WHICFHSN FS+QMKV+IP  DIDEI+RSQHAFINPAITIILR
Sbjct: 242 CALERSFLYHGRMYVSTWHICFHSNVFSKQMKVLIPFEDIDEIRRSQHAFINPAITIILR 301

Query: 243 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRA 302
           MGAGGHGVPPLGSPDGRVRYKFASFWNRNHA+R LQR  KN+  MLE EKKE AES LRA
Sbjct: 302 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHAVRSLQRAVKNFREMLETEKKENAESELRA 361

Query: 303 HSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKF 362
           HSSS+  S    K+ E ++ K  KRQ FIKEE LVGIYNDVFPCTAEQFF LL  DDSKF
Sbjct: 362 HSSSVRRSNIMDKVPETSMPKAGKRQTFIKEEALVGIYNDVFPCTAEQFFNLLLKDDSKF 421

Query: 363 TNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDK 422
           T++YR+ARKD+NLVMGQWH A+EYDGQVRE+ FRSLC SP+ P DTA+TE QH VLS DK
Sbjct: 422 TSKYRSARKDTNLVMGQWHTAEEYDGQVREITFRSLCNSPMCPPDTAITEWQHVVLSSDK 481

Query: 423 KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGA 482
           K  VFETVQQAHDVP GS FE+H +W LET  E+S T+DI+VGAHFKKWCV+Q KIK+GA
Sbjct: 482 KNLVFETVQQAHDVPLGSCFEVHCKWGLETTGESSCTLDIRVGAHFKKWCVMQSKIKSGA 541

Query: 483 VNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVT 520
           +N+YKKEV++ML+ ARSYIK  TS  E +  SS P+ T
Sbjct: 542 INEYKKEVDVMLDVARSYIKPHTSDDENDKASSPPAAT 579

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331873|ref|NP_191525.2| C2 domain and GRAM domain-containing protein [Arabidopsis thaliana] gi|17065130|gb|AAL32719.1| putative protein [Arabidopsis thaliana] gi|30725388|gb|AAP37716.1| At3g59660 [Arabidopsis thaliana] gi|332646431|gb|AEE79952.1| C2 domain and GRAM domain-containing protein [Arabidopsis thaliana]

 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/501 (74%), Positives = 422/501 (84%), Gaps = 2/501 (0%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
             +GD QTN+AY++K+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWG
Sbjct: 70  HLRGDTQTNAAYIVKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWG 129

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNF  DELP +I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+
Sbjct: 130 EEFNFPTDELPAKINVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLN 189

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           I  IKLPVNA R + GYAGA  RRR +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYS
Sbjct: 190 INAIKLPVNAPRAVTGYAGA-GRRRVTLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYS 248

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR 242
           C +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDEI+RSQHA INPAITIILR
Sbjct: 249 CALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILR 308

Query: 243 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRA 302
           MGAGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH MLE EKKE+A+SALRA
Sbjct: 309 MGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAQSALRA 368

Query: 303 HSSSI-GGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSK 361
           HSSS+ GG + Q K  E+T   P K Q FIKEEVLV IYNDVF  T EQ   +L +DDS 
Sbjct: 369 HSSSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYNDVFASTPEQVLNVLLADDST 428

Query: 362 FTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPD 421
           +TNEYR+ARKD NL +  WH A+EYDGQVRE+ FRS+C SP+ P DTA+TE QH VLSPD
Sbjct: 429 YTNEYRSARKDKNLNIEPWHTAEEYDGQVREIKFRSICNSPMCPPDTAVTEWQHVVLSPD 488

Query: 422 KKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTG 481
           KK+ VFETVQQ HDVPFGSYFE+H RW LE   E SS IDI+VG HFKKWC++Q KIK G
Sbjct: 489 KKVLVFETVQQPHDVPFGSYFEVHCRWRLEAKDETSSVIDIRVGVHFKKWCLMQSKIKAG 548

Query: 482 AVNKYKKEVELMLETARSYIK 502
           A+++YKKEVE+MLE A SY+K
Sbjct: 549 AIDEYKKEVEVMLEVALSYLK 569

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468844|ref|XP_004152131.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Cucumis sativus]

 Score =  801 bits (2070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/512 (73%), Positives = 429/512 (83%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFN 66
           D Q+NSAYLIKLELLAAKNLI ANLNGTSDPYAIITCG+EKRFSSM+PGSR PMWGEEFN
Sbjct: 82  DLQSNSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGTEKRFSSMIPGSRNPMWGEEFN 141

Query: 67  FSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTI 126
           FSVDELPVQI +TIYDWDI+WKS VLGSV VTVE+EG TGAVWYTLDSPSGQVCLHIKTI
Sbjct: 142 FSVDELPVQIHITIYDWDIVWKSAVLGSVTVTVENEGHTGAVWYTLDSPSGQVCLHIKTI 201

Query: 127 KLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIE 186
           KLPVNA   +NGYAGAN RRR SLDK   TVVHQKPG LQTIF LLPDE VE S+SC +E
Sbjct: 202 KLPVNAGSPVNGYAGANPRRRISLDKPELTVVHQKPGALQTIFELLPDEIVEHSFSCALE 261

Query: 187 RSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAG 246
           RSFLYHGRMYVS+WHICFHSN FS+QMKV+IP+GDIDEI+R+QHAFINPA+TIILRMGAG
Sbjct: 262 RSFLYHGRMYVSSWHICFHSNIFSKQMKVVIPLGDIDEIRRTQHAFINPAVTIILRMGAG 321

Query: 247 GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSS 306
           GHGVPPLGSPDGRVRYKFASFWNRNH +R LQR+  N+  MLEAEKKEKAESALRAHSSS
Sbjct: 322 GHGVPPLGSPDGRVRYKFASFWNRNHVVRALQRSVNNFREMLEAEKKEKAESALRAHSSS 381

Query: 307 IGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEY 366
           +  S  + KI  + + K +  Q F+KEEVL  I+N VFPC+ E+FF+ L SD S +T+ +
Sbjct: 382 VRVSETKEKIPADDLPKSKNTQAFLKEEVLTSIHNGVFPCSPERFFSTLLSDGSGYTSAF 441

Query: 367 RAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFV 426
            A RKD+NLVMGQWHAADEY+GQVRE+ +RSLC SP+ P DTAMTE QH VLS DKK  V
Sbjct: 442 VAKRKDTNLVMGQWHAADEYEGQVRELTYRSLCHSPMCPPDTAMTEYQHVVLSEDKKKLV 501

Query: 427 FETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKY 486
           FETVQ AHDVPFG+ FE+H RW LE  AE+SS++DIK G HFKKWC++Q KIK GA+ +Y
Sbjct: 502 FETVQNAHDVPFGANFELHCRWSLEKNAEDSSSVDIKAGVHFKKWCLMQSKIKAGAMLEY 561

Query: 487 KKEVELMLETARSYIKICTSGGETNNQSSTPS 518
           K+ V+L LE A  Y+   TSG ET+  +S PS
Sbjct: 562 KRAVDLRLEVALEYMNSNTSGNETDKVASAPS 593

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484724|ref|XP_004156962.1| PREDICTED: LOW QUALITY PROTEIN: C2 and GRAM domain-containing protein At1g03370-like [Cucumis sativus]

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/512 (73%), Positives = 428/512 (83%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFN 66
           D Q+NSAYLIKLELLAAKNLI ANLNGTSDPYAIITCG+EKRFSSM+PGSR PMWGEEFN
Sbjct: 82  DLQSNSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGTEKRFSSMIPGSRNPMWGEEFN 141

Query: 67  FSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTI 126
           FSVDELPVQI +TIYDWDI+WKS VLGSV VTVE+EG TGAVWYTLDSPSGQVCLHIKTI
Sbjct: 142 FSVDELPVQIHITIYDWDIVWKSAVLGSVTVTVENEGHTGAVWYTLDSPSGQVCLHIKTI 201

Query: 127 KLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIE 186
           KLPVNA   +NGYAGAN RRR SLDK   TVVHQKPG LQTIF LLPDE VE S+SC +E
Sbjct: 202 KLPVNAGSPVNGYAGANPRRRISLDKPELTVVHQKPGALQTIFELLPDEIVEHSFSCALE 261

Query: 187 RSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAG 246
           RSFLYHGRMYVS+WHICFHSN FS+QMKV+IP+GDIDEI+R+QHAFINPA+TIILRMGAG
Sbjct: 262 RSFLYHGRMYVSSWHICFHSNIFSKQMKVVIPLGDIDEIRRTQHAFINPAVTIILRMGAG 321

Query: 247 GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSS 306
           GHGVPPLGSPDGRVRYKFASFWNRNH +R LQR+  N+  MLEAEKKEKAESALRAHSSS
Sbjct: 322 GHGVPPLGSPDGRVRYKFASFWNRNHVVRALQRSVNNFREMLEAEKKEKAESALRAHSSS 381

Query: 307 IGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEY 366
           +  S  + KI  + + K    Q F+KEEVL  I+N VFPC+ E+FF+ L SD S +T+ +
Sbjct: 382 VRVSETKEKIPADDLPKSXNTQAFLKEEVLTSIHNGVFPCSPERFFSTLLSDGSGYTSAF 441

Query: 367 RAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFV 426
            A RKD+NLVMGQWHAADEY+GQVRE+ +RSLC SP+ P DTAMTE QH VLS DKK  V
Sbjct: 442 VAKRKDTNLVMGQWHAADEYEGQVRELTYRSLCHSPMCPPDTAMTEYQHVVLSEDKKKLV 501

Query: 427 FETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKY 486
           FETVQ AHDVPFG+ FE+H RW LE  AE+SS++DIK G HFKKWC++Q KIK GA+ +Y
Sbjct: 502 FETVQNAHDVPFGANFELHCRWSLEKNAEDSSSVDIKAGVHFKKWCLMQSKIKAGAMLEY 561

Query: 487 KKEVELMLETARSYIKICTSGGETNNQSSTPS 518
           K+ V+L LE A  Y+   TSG ET+  +S PS
Sbjct: 562 KRAVDLRLEVALEYMNSNTSGNETDKVASAPS 593

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582207|ref|XP_002531896.1| conserved hypothetical protein [Ricinus communis] gi|223528463|gb|EEF30495.1| conserved hypothetical protein [Ricinus communis]

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/443 (85%), Positives = 397/443 (89%), Gaps = 3/443 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGDPQ NSAY+IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR PM
Sbjct: 75  MGQLKGDPQGNSAYIIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRNPM 134

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKSTVLGSV V VESEGQTGAVWYTLDSPSGQVC
Sbjct: 135 WGEEFNFSVDELPVQIQVTIYDWDIIWKSTVLGSVTVPVESEGQTGAVWYTLDSPSGQVC 194

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIKL VN+SR MNGYAGA+ARRR SLD QGPTVVHQKPGPLQTIFNL  DE VE S
Sbjct: 195 LHIKTIKLSVNSSRAMNGYAGASARRRISLDTQGPTVVHQKPGPLQTIFNLPADEIVEHS 254

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240
           YSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKVIIP+GDIDEI+RSQHAFINPAITII
Sbjct: 255 YSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPLGDIDEIRRSQHAFINPAITII 314

Query: 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AK YH MLE +KKE+AESAL
Sbjct: 315 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRALQRAAKTYHDMLEVQKKERAESAL 374

Query: 301 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDS 360
           RAHSSSI G     KI ++ V K EK QPFIKEEVLVGI+ND FPCTAEQFF LL +D S
Sbjct: 375 RAHSSSIRGG---IKIPDDIVPKVEKHQPFIKEEVLVGIHNDAFPCTAEQFFNLLLNDGS 431

Query: 361 KFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP 420
           KFTNEYRA RKD+NL+MGQWHAADEYDGQVRE+ FRSLC SP+ P DTAMTE QHAV SP
Sbjct: 432 KFTNEYRAVRKDTNLIMGQWHAADEYDGQVREITFRSLCHSPMCPPDTAMTEYQHAVFSP 491

Query: 421 DKKIFVFETVQQAHDVPFGSYFE 443
           D+KI VFETVQ AHDVPFGSYFE
Sbjct: 492 DRKILVFETVQNAHDVPFGSYFE 514

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820804|ref|XP_002878285.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324123|gb|EFH54544.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/484 (75%), Positives = 409/484 (84%), Gaps = 2/484 (0%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
           Q +GD QTN+AY+IK+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWG
Sbjct: 71  QMRGDTQTNAAYIIKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWG 130

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNF  DELPV+I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+
Sbjct: 131 EEFNFPTDELPVKISVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLN 190

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           I  IKLPVNA R + GYAGA  RRR +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYS
Sbjct: 191 INAIKLPVNAPRAVTGYAGA-GRRRVTLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYS 249

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR 242
           C +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDEI+RSQHA INPAITIILR
Sbjct: 250 CALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILR 309

Query: 243 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRA 302
           MGAGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH MLE EKKE+AESALRA
Sbjct: 310 MGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAESALRA 369

Query: 303 HSSSI-GGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSK 361
           HSSS+ GG + Q K  E+T   P K Q FIKEEVLV IYNDVF  T EQ   +L +DDS 
Sbjct: 370 HSSSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYNDVFASTPEQVLNVLLADDST 429

Query: 362 FTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPD 421
           +TNEYR+ARKD NL +  WH A+EYDGQVRE+ FRS+C SP+ P DTA+TE QH VLSPD
Sbjct: 430 YTNEYRSARKDKNLNIEPWHTAEEYDGQVREIKFRSICNSPMCPPDTAVTEWQHVVLSPD 489

Query: 422 KKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTG 481
           KK+ VFETVQQ HDVPFGSYFE+H RW LE   E SS IDI+VG HFKKWC++Q KIK G
Sbjct: 490 KKVLVFETVQQPHDVPFGSYFEVHCRWRLEAKDETSSVIDIRVGVHFKKWCLMQSKIKAG 549

Query: 482 AVNK 485
           A+++
Sbjct: 550 AIDE 553

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
TAIR|locus:2097578	594	AT3G59660 "AT3G59660" [Arabido	0.986	0.870	0.692	9.7e-199
UNIPROTKB|Q5Z6I4	1037	OSJNBa0055N24.36 "Putative Osn	0.864	0.436	0.219	1e-18
DICTYBASE|DDB_G0267942	898	DDB_G0267942 "GRAM domain-cont	0.391	0.228	0.251	3.1e-18
UNIPROTKB|Q66VB0	1086	Os06g0607900 "Os06g0607900 pro	0.498	0.240	0.266	8.3e-16
TAIR|locus:2157707	1027	AT5G50170 "AT5G50170" [Arabido	0.204	0.104	0.315	4.5e-15
TAIR|locus:2205625	598	VAD1 "VASCULAR ASSOCIATED DEAT	0.204	0.178	0.325	1.7e-14
UNIPROTKB|Q3KR37	738	GRAMD1B "GRAM domain-containin	0.303	0.215	0.232	3.4e-14
RGD|1305443	733	Gramd1b "GRAM domain containin	0.330	0.236	0.239	4.3e-14
MGI|MGI:1925037	738	Gramd1b "GRAM domain containin	0.303	0.215	0.232	4.4e-14
UNIPROTKB|Q8IYS0	662	GRAMD1C "GRAM domain-containin	0.366	0.290	0.228	2.6e-12

TAIR|locus:2097578 AT3G59660 "AT3G59660" [Arabidopsis thaliana (taxid:3702)]

 Score = 1924 (682.3 bits), Expect = 9.7e-199, P = 9.7e-199
 Identities = 361/521 (69%), Positives = 414/521 (79%)

Query:     5 KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEE 64
             +GD QTN+AY++K+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWGEE
Sbjct:    72 RGDTQTNAAYIVKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWGEE 131

Query:    65 FNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK 124
             FNF  DELP +I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+I 
Sbjct:   132 FNFPTDELPAKINVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLNIN 191

Query:   125 TIKLPVNASRVMXXXXXXXXXXXXSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCV 184
              IKLPVNA R +            +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYSC 
Sbjct:   192 AIKLPVNAPRAVTGYAGAGRRRV-TLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYSCA 250

Query:   185 IERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMG 244
             +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDEI+RSQHA INPAITIILRMG
Sbjct:   251 LERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILRMG 310

Query:   245 AGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLXXXXXXXXXXXLRAHS 304
             AGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH ML           LRAHS
Sbjct:   311 AGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAQSALRAHS 370

Query:   305 SSI-GGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFT 363
             SS+ GG + Q K  E+T   P K Q FIKEEVLV IYNDVF  T EQ   +L +DDS +T
Sbjct:   371 SSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYNDVFASTPEQVLNVLLADDSTYT 430

Query:   364 NEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKK 423
             NEYR+ARKD NL +  WH A+EYDGQVRE+ FRS+C SP+ P DTA+TE QH VLSPDKK
Sbjct:   431 NEYRSARKDKNLNIEPWHTAEEYDGQVREIKFRSICNSPMCPPDTAVTEWQHVVLSPDKK 490

Query:   424 IFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAV 483
             + VFETVQQ HDVPFGSYFE+H RW LE   E SS IDI+VG HFKKWC++Q KIK GA+
Sbjct:   491 VLVFETVQQPHDVPFGSYFEVHCRWRLEAKDETSSVIDIRVGVHFKKWCLMQSKIKAGAI 550

Query:   484 NKYKKEVELMLETARSYIKICTSGGETNN--QSSTPSVTPD 522
             ++YKKEVE+MLE A SY+K  +S     +  +S+  S TP+
Sbjct:   551 DEYKKEVEVMLEVALSYLKSHSSSSSHGDIDKSALSSPTPE 591

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

UNIPROTKB|Q5Z6I4 OSJNBa0055N24.36 "Putative Osnop" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 258 (95.9 bits), Expect = 1.0e-18, P = 1.0e-18
 Identities = 110/501 (21%), Positives = 203/501 (40%)

Query:    12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE 71
             + +L+ + L+   NL     +G SDPY + TC  + + SS+   +  P W E F F   E
Sbjct:   554 NGWLLTVALIDGTNLAATKSSGYSDPYVVFTCNGKTKTSSIKFHTLEPRWNEIFEFDAME 613

Query:    72 LPVQII-VTIYDWDIIWKSTV-LGSVIVT-VESE-GQTGAVWYTLDSPSGQVCLHIKTIK 127
              P  ++ + +YD+D  +     LG   V  ++S   +   +W  L     Q C     ++
Sbjct:   614 DPPSVMKINVYDFDGPFDEVESLGHAEVNFLKSNLSELSDIWIPLKGKLAQACQSKLHLR 673

Query:   128 LPVNASRVMXXXXXXXXXXXXSLDKQ-GPTVVHQKP---GPLQTIFNLLPDEFVELSYSC 183
             + +N SR               ++K+ G  +  + P      Q IF+L P+EF+   ++C
Sbjct:   674 IILNNSR----GTEVMKDYLDKMEKEVGKKIAVRSPHTNSAFQKIFSLPPEEFLINDFTC 729

Query:   184 VIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRM 243
              ++R  L  GR+++S   I F++N F  + K      DI++IQ      + PA T+    
Sbjct:   730 HLKRKMLTQGRLFLSPRIIGFYTNLFGHKTKFFFLWEDIEDIQ------VMPA-TLY--- 779

Query:   244 GAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAK-NYHTMLXXXXXXXXXXXLRA 302
                      +GSP   +        +  H  +QL    +  +H              +  
Sbjct:   780 --------SMGSPSLLIILHKGRGMDARHGAKQLDNEGRLKFHFQSFVSFNVAHKTIMAL 831

Query:   303 HSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGI----YNDVFPCTAEQFFTLLFSD 358
               +      ++ ++VEE     + +    + +  +GI     ++VF  T     + L S 
Sbjct:   832 WKARSLTPEQKVQLVEEESEMKDLQNN--ESDSFLGIEDAKMSEVFSSTKPFDVSTLMSI 889

Query:   359 DSKFTNEYRAARKDSNLV--MGQWHA--ADEYDGQVREVAFRSLCKSPIYPRDTAMTESQ 414
                   E++   K   +   +  W +  AD Y  Q+     + L +         M+  Q
Sbjct:   890 FEGGPLEHQVMEKIGCMEYSVSPWESVRADAYQRQIHYKFDKRLARH----EGEVMSTQQ 945

Query:   415 HAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAEN--SSTIDIKVGAHFKKWC 472
              + L PDK  ++ E V     +P G YF +H R+ LE I+    +  + + +G  + K C
Sbjct:   946 KSPL-PDKNGWLVEEVMTLEGIPVGEYFNLHMRYQLEQISSKPKACNVQVSIGIAWLKSC 1004

Query:   473 VIQFKIKTGAVNKYKKEVELM 493
               + KI    ++     ++ M
Sbjct:  1005 KNRKKIAQEVLSSASSRLKKM 1025

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

DICTYBASE|DDB_G0267942 DDB_G0267942 "GRAM domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 193 (73.0 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
 Identities = 53/211 (25%), Positives = 101/211 (47%)

Query:   317 VEETVTKPEKRQPFIKEEV--LVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSN 374
             VE+ ++K ++ Q  ++ +      I +D F  +   F+  L+SD   F + Y   R D N
Sbjct:   473 VEQYLSKDQQPQSILESQSSDFQEILSDNFNVSVVNFYRALYSDRCNFVHSYHVKRGDMN 532

Query:   375 LVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAH 434
             + +  W   + + G +REV + +   SPI P  T + E+Q   L+  K I   +T+    
Sbjct:   533 VNVKPWTFRERF-GTIREVEYVAPVSSPIGPDKTRIQETQRYQLTRKKLIVETDTIML-- 589

Query:   435 DVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELML 494
             D+P+G +F I  +W +   ++++  + I +   F K    + KI+T  V + K   +  +
Sbjct:   590 DIPYGDHFRIEAKWEVTETSQDTCRLSISLTVRFVKKTWFKSKIETTTVKETKTSFDKWV 649

Query:   495 ETARSYI-KICTSGGETNNQSSTPSVTPDCN 524
             + A+  + K+       +  SST + T + N
Sbjct:   650 QLAKVEVQKMLQVKPLPSASSSTATNTTNNN 680

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q66VB0 Os06g0607900 "Os06g0607900 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 232 (86.7 bits), Expect = 8.3e-16, P = 8.3e-16
 Identities = 72/270 (26%), Positives = 126/270 (46%)

Query:    14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNF-SVDEL 72
             +L+ + L+    +  +N     D YA+ TC ++++ SS+   +  P W E + F ++D+ 
Sbjct:   604 WLMTVALIEGTGITNSNSKELFDMYAVFTCNAKRKTSSVKFQTSEPKWNEIYEFDAMDDP 663

Query:    73 PVQIIVTIYDWDIIWKSTVLGSVIVT-VESE-GQTGAVWYTLDSPSGQVCLHIKTIKLPV 130
             P ++ V I+D +  +  + +G   V  ++S       VW  L+    Q       +++ +
Sbjct:   664 PSRMDVAIHDANGPFDQSPIGHAEVNFLKSNLSDLTDVWLPLEGKCDQTSNPKIHLRIFL 723

Query:   131 NASRVMXXXXXXXXXXXXSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFL 190
             N SR               + K+      Q     + +FNL P+EF+   ++C ++R   
Sbjct:   724 NNSRGTEVVMNYLAKMRKEVGKKINLRSAQTNAAFRKLFNLPPEEFLIDDFTCHLKRKMP 783

Query:   191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI--NPAITIILRMGAG-- 246
               GR++ S   I F+SN F  + K      D+D+IQ         +P++TIILR G G  
Sbjct:   784 LQGRLFFSPRIIGFYSNIFGHKTKFFFLWDDVDDIQVIPPTLSIGSPSLTIILRKGRGLE 843

Query:   247 -GHGVPPLGSPDGRVRYKFASFWNRNHALR 275
               HG      P+GR++Y F SF + N A R
Sbjct:   844 AKHGAKGT-DPNGRLKYYFQSFVSFNDAHR 872

GO:0010152 "pollen maturation" evidence=IMP

TAIR|locus:2157707 AT5G50170 "AT5G50170" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 4.5e-15, Sum P(3) = 4.5e-15
 Identities = 36/114 (31%), Positives = 56/114 (49%)

Query:   160 QKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPI 219
             QK    Q +F L  +EF+   Y+C ++R     G++++SA  + F+SN F  + K     
Sbjct:   689 QKNSAFQKLFGLPHEEFLLKEYTCYLKRKLPVQGKLFLSARIVAFYSNVFGHKTKFYFLW 748

Query:   220 GDIDEIQRSQHAFIN---PAITIILRMGAG---GHGVPPLGSPDGRVRYKFASF 267
              DID+IQ     F +   P + IIL+   G    HG       +GR+ + F SF
Sbjct:   749 EDIDDIQVLPPTFASLGSPLLLIILKKNRGLDAKHGAKSQDD-EGRLSFYFQSF 801

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205625 VAD1 "VASCULAR ASSOCIATED DEATH1" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
 Identities = 41/126 (32%), Positives = 62/126 (49%)

Query:   151 DKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFS 210
             D Q   +   K    + +F L  DE +   ++C  + S L  G MY+   +ICF+SN F 
Sbjct:    60 DNQSEVI--SKSEEYRQLFRLPADEILVQDFNCACQESILMQGHMYLFIHYICFYSNIFG 117

Query:   211 RQMKVIIPIGDIDEIQRSQHAFINP-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWN 269
              + K IIP  +I  ++R++ A I P AI I+    AGG             +Y FASF +
Sbjct:   118 YETKKIIPFAEISCVKRAKTAGIFPNAIEIL----AGGK------------KYFFASFLS 161

Query:   270 RNHALR 275
             R+ A +
Sbjct:   162 RDEAFK 167

GO:0005634 "nucleus" evidence=ISM

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q3KR37 GRAMD1B "GRAM domain-containing protein 1B" [Homo sapiens (taxid:9606)]

 Score = 149 (57.5 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
 Identities = 39/168 (23%), Positives = 81/168 (48%)

Query:   341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK 400
             N+VF  + ++ + LLF++ S F  ++   R+ S+++   W   +E   Q R + +     
Sbjct:   378 NEVFNFSVDKLYDLLFTN-SPFQRDFMEQRRFSDIIFHPWKK-EENGNQSRVILYTITLT 435

Query:   401 SPIYPRDTAMTESQHAV-LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSST 459
             +P+ P+   + E+Q     S + + +V +     HDVP+  YF    R+ L  +A N S 
Sbjct:   436 NPLAPKTATVRETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKSR 495

Query:   460 IDIKVGAHFKK--WCVIQFKIKTG---AVNKYKKEVELML-ETARSYI 501
             + +     ++K  W +++  I+      +  Y + +E  L +T  +Y+
Sbjct:   496 LRVSTELRYRKQPWGLVKTFIEKNFWSGLEDYFRHLESELAKTESTYL 543

GO:0016021 "integral to membrane" evidence=IEA

RGD|1305443 Gramd1b "GRAM domain containing 1B" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
 Identities = 44/184 (23%), Positives = 85/184 (46%)

Query:   341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK 400
             N+VF  + ++ + LLF+  S F  ++   R+ S+++   W   +E   Q R + +     
Sbjct:   373 NEVFNFSVDKLYDLLFTT-SPFLRDFMEQRRFSDIIFHPWKK-EENGNQSRVILYTITLT 430

Query:   401 SPIYPRDTAMTESQHAV-LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSST 459
             +P+ P+   + E+Q     S + + +V +     HDVP+  YF    R+ L  +A N S 
Sbjct:   431 NPLAPKTATVRETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKSR 490

Query:   460 IDIKVGAHFKK--WCVIQFKIKTG---AVNKYKKEVELML-ETARSYIKIC--TSGGETN 511
             + +     ++K  W  ++  I+      +  Y + +E  L +T  +Y+      S  E  
Sbjct:   491 LRVSTELRYRKQPWGFVKTFIEKNFWSGLEDYFRHLETELTKTESTYLAEIHRQSPKEKT 550

Query:   512 NQSS 515
             N+SS
Sbjct:   551 NKSS 554

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1925037 Gramd1b "GRAM domain containing 1B" [Mus musculus (taxid:10090)]

 Score = 148 (57.2 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
 Identities = 39/168 (23%), Positives = 80/168 (47%)

Query:   341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK 400
             N+VF  + ++ + LLF++ S F  ++   R+ S+++   W   +E   Q R + +     
Sbjct:   378 NEVFNFSVDKLYDLLFTN-SPFLRDFMEQRRFSDIIFHPWKK-EENGNQSRVILYTITLT 435

Query:   401 SPIYPRDTAMTESQHAV-LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSST 459
             +P+ P+   + E+Q     S + + +V +     HDVP+  YF    R+ L  +A N S 
Sbjct:   436 NPLAPKTATVRETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKSR 495

Query:   460 IDIKVGAHFKK--WCVIQFKIKTG---AVNKYKKEVELML-ETARSYI 501
             + +     ++K  W  ++  I+      +  Y + +E  L +T  +Y+
Sbjct:   496 LRVSTELRYRKQPWGFVKTFIEKNFWSGLEDYFRHLETELTKTESTYL 543

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8IYS0 GRAMD1C "GRAM domain-containing protein 1C" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 47/206 (22%), Positives = 101/206 (49%)

Query:   301 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVG--IYNDVFPCTAEQFFTLLFSD 358
             R  S S+  ++ +   ++++ T     +  + E+ L G    N +F  +A++ F LLF+ 
Sbjct:   290 RVPSKSLDLNKNEYLSLDKSSTSDSVDEENVPEKDLHGRLFINRIFHISADRMFELLFTS 349

Query:   359 DSKFTNEYRAARKDSNLVMGQWHAADEYDG-QVREVAFRSLCKSPIYPRDTAMTESQHAV 417
              S+F  ++ ++R   ++V   W A  E  G Q+R + +  +  SP+  + TA TE Q   
Sbjct:   350 -SRFMQKFASSRNIIDVVSTPWTA--ELGGDQLRTMTYTIVLNSPLTGKCTAATEKQTLY 406

Query:   418 L-SPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKK--WCVI 474
               S + + ++ ++    HDVP+  YF    R+ +   ++    + +     ++K  W ++
Sbjct:   407 KESREARFYLVDSEVLTHDVPYHDYFYTVNRYCIIRSSKQKCRLRVSTDLKYRKQPWGLV 466

Query:   475 QFKIKTGA---VNKYKKEVE--LMLE 495
             +  I+  +   +  Y K++E  L++E
Sbjct:   467 KSLIEKNSWSSLEDYFKQLESDLLIE 492

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01420059 hypothetical protein (590 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	524
cd13219	161	cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-conta	7e-75
cd00030	102	cd00030, C2, C2 domain	5e-21
cd13220	111	cd13220, PH-GRAM_GRAMDC, GRAM domain-containing pr	1e-18
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	2e-16
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-15
pfam00168	85	pfam00168, C2, C2 domain	8e-15
smart00239	101	smart00239, C2, Protein kinase C conserved region	4e-14
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	4e-12
pfam02893	60	pfam02893, GRAM, GRAM domain	6e-12
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	2e-11
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-10
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	1e-09
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-09
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	2e-08
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	4e-08
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	8e-08
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	1e-07
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	4e-07
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	8e-07
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	1e-06
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-06
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	3e-05
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	3e-05
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	3e-05
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	5e-05
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	8e-05
cd13349	135	cd13349, PH-GRAM1_TBC1D8, TBC1 domain family membe	1e-04
cd13217	100	cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and	2e-04
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	2e-04
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	4e-04
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	5e-04
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	6e-04
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	7e-04
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	0.001
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	0.001
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	0.002
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	0.002
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	0.002
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	0.002
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	0.003
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	0.004
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	0.004
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	0.004
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	0.004

>gnl|CDD|241373 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  233 bits (596), Expect = 7e-75
 Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 6/162 (3%)

Query: 144 ARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHIC 203
           ++    + K+      QK    Q +F L P+EF+   ++C ++R F   GR+++SA  I 
Sbjct: 1   SKMEKEVGKKINLRSPQKNSAFQKLFGLPPEEFLINDFTCALKRKFPLQGRLFLSARIIG 60

Query: 204 FHSNAFSRQMKVIIPIGDIDEIQRSQHAF--INPAITIILRMG---AGGHGVPPLGSPDG 258
           F+SN F  + K      DI+EIQ S  +    +P+I IILR G      HG  P   P+G
Sbjct: 61  FYSNLFGHKTKFFFLWEDIEEIQVSPPSLSVGSPSIVIILRKGRGLDARHGAKP-QDPEG 119

Query: 259 RVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           R+++ F SF + NHA R +    KN     E +K+   ES L
Sbjct: 120 RLKFHFQSFVSFNHAFRTIMALWKNRSLSPEQKKQIVEESEL 161

C2GRAM contains two N-terminal C2 domains followed by a single PH-GRAM domain. Since it contains both of these domains it is assumed that this gene cross-links both calcium and phosphoinositide signaling pathways. In general he C2 domain is involved in binding phospholipids in a calcium dependent manner or calcium independent manner. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 161

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 87.5 bits (217), Expect = 5e-21
 Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 5/102 (4%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPV 74
           +++ ++ A+NL   +LNG SDPY  ++ G +++F + +V  +  P+W E F F V +   
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 75  Q-IIVTIYDWDIIWKSTVLGSVIVTVES---EGQTGAVWYTL 112
             + V ++D D   K   LG V + +      G+ G +W  L
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 81.4 bits (202), Expect = 1e-18
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 17/118 (14%)

Query: 169 FNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228
            +L  DE +   YSC ++R  L  GR+Y+S  HICF+SN F  + K++IP  DI  I++ 
Sbjct: 4   KSLPDDERLIDDYSCALQRDILLQGRLYISENHICFYSNIFGWETKLVIPFKDITSIEKK 63

Query: 229 QHAFINP-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYH 285
           + A + P AI I                     +Y FASF +R+     + R   N  
Sbjct: 64  KTAGLFPNAIQIETLTE----------------KYFFASFLSRDSTFDLITRVWSNAL 105

The GRAMDC proteins are membrane proteins. Nothing is known about its function. Members include: GRAMDC1A, GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and GRAMDC-like proteins. All of the members, except for GRAMDC4 are included in this hierarchy. Each contains a single PH-GRAM domain at their N-terminus. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 111

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 73.4 bits (181), Expect = 2e-16
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQ 229
            L  +E +   YSC + R+    GR+Y+S + +CF SN   +  KV+IP+ DI  I++S 
Sbjct: 1   KLPEEEKLIADYSCYLSRTGPVQGRLYISNYRLCFRSNLPGKLTKVVIPLADITRIEKST 60

Length = 60

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-V 78
           +L A++L   + NGTSDP+  +    +   +S+V  S YP W E F F + E     + V
Sbjct: 6   VLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSV 65

Query: 79  TIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
            ++DWD++ K+  LG V+ ++++  Q      W+ L
Sbjct: 66  EVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRL 101

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 69.2 bits (170), Expect = 8e-15
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEFNFSVDEL 72
          +++ +++AKNL   +LNG SDPY  ++ G +K+    + +V  +  P+W E F F V   
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 73 PVQ-IIVTIYDWDIIWKSTVLGSVI 96
           +  + + +YD+D   K   +G V 
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 67.9 bits (166), Expect = 4e-14
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEFNFSVDE 71
            + +++++A+NL   +  G SDPY  ++   + +    + +V  +  P+W E F F V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 72  LPVQ-IIVTIYDWDIIWKSTVLGSVIVTVES 101
             +  + + +YD D   +   +G V + +  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSD 91

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 13/122 (10%)

Query: 15  LIKLELLAAKNLIGANLN------GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS 68
           ++++ ++ A++L+  +        G SDPY I+  G++   S ++  +  P W E +   
Sbjct: 2   VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAV 61

Query: 69  VDELP-VQIIVTIYDWDIIWKSTVLGSV---IVTVESEGQTGAVWYTL-DSPSGQVCLHI 123
           VDE+P  ++ + ++D D   K   LG +   + +VE +G     W  L D  SG++ L +
Sbjct: 62  VDEVPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDE-WLPLEDVKSGRLHLKL 119

Query: 124 KT 125
           + 
Sbjct: 120 EW 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 60.3 bits (147), Expect = 6e-12
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 171 LLPDEFVELSYSCVIERSF-LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQ 229
           L P+E +   YSC ++R      GR+Y++   +CF S+ F     ++IP+ DI+ +++ +
Sbjct: 1   LPPEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKFGDLTVLVIPLADIERVEKEK 60

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ LI  +  GTSDPY  +  G  K+ +  +P +  P+W E+F+F       +
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS +           LG  I+ V +      VWY L+      + SG 
Sbjct: 63  IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGA 122

Query: 119 VCLHI 123
           + LHI
Sbjct: 123 IRLHI 127

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 16  IKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
           +++ ++ AK+L   +    G SDPYAI++ G+++  +  +P +  P W     F +    
Sbjct: 3   LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62

Query: 74  VQII-VTIYDWDIIWKSTVLGSV------IVTVESEGQTGAVWYTLDS 114
            Q++ + ++D D       LG        +      GQ+   W TL S
Sbjct: 63  NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDK-WITLKS 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 15/100 (15%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPV 74
           + +++++A+NL  A+ NG SDP+       EK F +  +  +  P+W E F     E+PV
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESF-----EVPV 55

Query: 75  ------QIIVTIYDWDIIWKSTVLGSVIV---TVESEGQT 105
                  + V +YDWD   K  +LGS  +    +E E  T
Sbjct: 56  PSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETT 95

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-V 78
           L+  KNL   + NG SDPY     G+EK  S +   +  P W E+F+  + +   QI+ +
Sbjct: 6   LVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65

Query: 79  TIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTLDSPSGQVCLHI 123
            ++D D   K   +G   + +      QT ++   L+   G + L +
Sbjct: 66  EVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGEGSLLLLL 112

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 28/114 (24%)

Query: 21  LAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---- 72
           LA K+      NGT DP+A +T      ++ + + +   +  P + E F F +       
Sbjct: 11  LALKS------NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYE 64

Query: 73  ------------PVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
                         ++ V ++   ++     LG V + ++   Q G+   WY L
Sbjct: 65  KKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFL 118

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           L+K+ ++   NL   +   +SDPY ++T G++K  + ++  +  P+W EE   SV     
Sbjct: 3   LLKVRVVRGTNLAVRDFT-SSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVE 100
            + + ++D D   K   +G   + +E
Sbjct: 62  PLKLEVFDKDTFSKDDSMGEAEIDLE 87

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGS-RYPMWGEEFNFSVDELPVQ-- 75
            L++AK L   +  G  DPY II C +++R S +  G  R P W E+F F+V E P    
Sbjct: 6   LLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTV-EYPGWGG 64

Query: 76  ---IIVTIYDWDIIWKSTVLGSVIVTVE 100
              +I+ I D D       +G   + ++
Sbjct: 65  DTKLILRIMDKDNFSDDDFIGEATIHLK 92

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 32/114 (28%), Positives = 63/114 (55%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT--CGSE---KRFSSMVPGSRYPMWGEEFNFSV- 69
           + + +L A+NL  ++  G SDPY  ++   G +   K+ +S+  G+  P++ E F+F V 
Sbjct: 16  LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75

Query: 70  -DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
            ++L  V +++T+ D D + ++ V+G V++  +S G+    W   L SP   + 
Sbjct: 76  AEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIA 129

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 17  KLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV-- 74
           +L +L AKNL      GT DPY  ++    +   +       P WGEEF F  D+ P   
Sbjct: 3   RLRILEAKNLP---SKGTRDPYCTVSLDQVEVARTKTVEKLNPFWGEEFVF--DDPPPDV 57

Query: 75  ---QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS--PSGQVC--LHIK 124
               +     D     +  V+G V ++    GQ    W+ L    P  +V   + ++
Sbjct: 58  TFFTLSFYNKDKRSKDRDIVIGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLR 114

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 47.5 bits (114), Expect = 8e-07
 Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSS---MVPGSRYPMWGEEFNFSVDE 71
           L+++ ++ A+NL   + NG SDPY  I  G +K+ +     +P +  P++G+ F      
Sbjct: 1   LVRVYVVRARNLQPKDPNGKSDPYLKIKLG-KKKINDRDNYIPNTLNPVFGKMFELEA-T 58

Query: 72  LPVQII--VTIYDWDIIWKSTVLGSVIVTVE 100
           LP   I  +++ D+D++    ++G  ++ +E
Sbjct: 59  LPGNSILKISVMDYDLLGSDDLIGETVIDLE 89

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 169 FNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228
           F L   E +   Y   ++R    +G++Y+S  + CF S     + K+I+P+ DI+ +++ 
Sbjct: 7   FALPESEKLLAYYYAYLQRVLPVYGKLYISDNYFCFRSLLPGTRTKMILPLKDIENVEKE 66

Query: 229 Q-HAFINPAITIILRMGAGGH 248
           +   F    + I++R    GH
Sbjct: 67  KGFRFGYSGLVIVIR----GH 83

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 11/104 (10%)

Query: 8   PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWG 62
           P  N    I + ++ A+NL   ++NGTSDPY  +         EK+ + +   +  P++ 
Sbjct: 12  PTANR---ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFN 68

Query: 63  EEFNFSV--DEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESEG 103
           E F F++  + L    +I+T+ D D + ++ ++G + +  +S G
Sbjct: 69  ESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGG 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 14/95 (14%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELP- 73
           +L AKNL   ++ G SDPY  I         +K+ +++   +  P + E F+F   E+P 
Sbjct: 21  ILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSF---EVPF 77

Query: 74  -----VQIIVTIYDWDIIWKSTVLGSVIVTVESEG 103
                V +IVT+ D+D I K+  +G V++   + G
Sbjct: 78  EQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATG 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT 79
           + +A+ L   +  G +DPY II C  E   S +   +  P +  +  F   +    I + 
Sbjct: 9   VHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQ 68

Query: 80  IYDWDIIWKSTVLGSVIVTVE 100
           +++ +++     LG   ++ +
Sbjct: 69  VWNSNLL-CDEFLGQATLSAD 88

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 14  YLIKLELLAAKNLIGANLNGTSDPYAIIT-CGSEKRFSS--MVPGSRYPMWGEEFNFSV- 69
           +L  + ++ A+NL   + NG SDPY  +     ++R +    +  +  P W EEF   V 
Sbjct: 1   HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60

Query: 70  DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-----EGQTGAVWYTLDSPSGQVCLHI 123
              P+ I  T++D   + K  + G   + ++      +G    +W  LD   G++ L +
Sbjct: 61  AGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-TQGRLLLRV 118

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 19/91 (20%)

Query: 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR---SQHAFINPAITIILRMGAGGHG 249
           G +Y++ + + F S       ++ +P+G I  +++   S     +  + I  +       
Sbjct: 19  GTLYLTNYRLYFKSKERDSPTELDVPLGVISRVEKVGGSSSGENSYGLEITCK------- 71

Query: 250 VPPLGSPDGRVRYKFASFWNRNHALRQLQRT 280
                  D R   +FA F   +H+ R +   
Sbjct: 72  -------DMRN-LRFA-FKQEDHSRRDIFEL 93

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 10   TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFS 68
             NS YL  + L + +NL  ++ NG SDP+  +    +  + + +V  +  P+W EEF   
Sbjct: 1037 ENSGYL-TIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIE 1095

Query: 69   VD-ELPVQIIVTIYDWDIIWKSTVLGSVIVTVES 101
            V   +   + + + DWD   K+ +LG+  + +  
Sbjct: 1096 VLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSK 1129

Length = 1227

>gnl|CDD|241503 cd13349, PH-GRAM1_TBC1D8, TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 169 FNLLPDEFVELSYSCVIERSFL-YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR 227
           FN    E +   YSC   +  +   G +Y+S  H+CF+S    +++K++IP  ++ +++R
Sbjct: 19  FNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVEVQKLER 78

Query: 228 SQHAFINPAITIILR 242
           + + F+   I +  +
Sbjct: 79  TSNVFMTDTIRVTTQ 93

TBC1D8 may act as a GTPase-activating protein for Rab family protein(s). TBC1D8 contains an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 135

>gnl|CDD|241371 cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 173 PDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAF 232
            +E V        +      G +Y+S  H+CF+S     + K++I   ++ +I++S    
Sbjct: 1   EEELVTSYSCSYWKGKVPRQGWLYLSLNHLCFYSFLLGSESKLVIRWTELTDIEKS---- 56

Query: 233 INPAIT 238
            N  I 
Sbjct: 57  GNTTIK 62

TBC1D8, TBC1D8B, TBC1D9 and TBC1D9B may act as a GTPase-activating proteins for Rab family protein(s). They all contain an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 100

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 21 LAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
          L A+ L+    +GT+D Y II  G EK  +S+   +  P+W EE +F   ELP
Sbjct: 6  LQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSF---ELP 55

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 18/91 (19%)

Query: 11  NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR--------YPMWG 62
            S   +++E+L A+NL+  + NG+SDP+  +       F   VP  +        +P++ 
Sbjct: 13  ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLF-PDVPTPKTQVKKKTLFPLFD 71

Query: 63  EEFNFSVDELPVQ-------IIVTIYDWDII 86
           E F F+V   P Q       ++ T+ D+D++
Sbjct: 72  ESFEFNVP--PEQCSVEGALLLFTVKDYDLL 100

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQI-I 77
           ++  KNL   ++ G+SDPY I+   +E    ++ V  +  P WGEE+      LP     
Sbjct: 6   IVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTV---HLPPGFHT 62

Query: 78  VTIY--DWDIIWKSTVLGSVIVTVE 100
           V+ Y  D D + +  V+G V +T E
Sbjct: 63  VSFYVLDEDTLSRDDVIGKVSLTRE 87

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 20/78 (25%), Positives = 39/78 (50%)

Query: 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT 79
          ++ A  L  A++ G SDP+ ++   + +  +  +  +  P W + F F + ++   + VT
Sbjct: 7  VIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVT 66

Query: 80 IYDWDIIWKSTVLGSVIV 97
          +YD D   K   LG V +
Sbjct: 67 VYDEDKDKKPEFLGKVAI 84

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 23  AKNLIGAN-LNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQIIVTI 80
           AKNL   +  N   D Y  +    E+ F +  V  S  P +GE+F F +      +   I
Sbjct: 9   AKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYI 68

Query: 81  YDWDIIWKSTVLGSVIVTVE 100
           YD D++ + +V+G V +  E
Sbjct: 69  YDRDVLRRDSVIGKVAIKKE 88

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 24  KNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD 82
           +NL   +  GTSDPY     G +  + S  +  +  P+W E+F   ++++   + + ++D
Sbjct: 10  RNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFD 69

Query: 83  WDIIWKSTVLGSVIVTVESE 102
           +D       +GS  V + + 
Sbjct: 70  YDRGLTDDFMGSAFVDLSTL 89

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 16 IKLELLAAKNL-IGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDELP 73
          +K+ ++AA++L +    +  +D +  +  GS    + +V  S  P+W  E F F VD+  
Sbjct: 1  LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60

Query: 74 VQ---IIVTIYDWDIIWKSTVLGSVIV 97
          +Q   + + + D D    +  +G V +
Sbjct: 61 LQDEPLQIRVMDHDTYSANDAIGKVYI 87

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 12/82 (14%)

Query: 23 AKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSV-----DELPVQII 77
          AKNL  A       PY  +T G   + S +   +  P+W E F F V      EL +++ 
Sbjct: 9  AKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVK 68

Query: 78 VTIYDWDIIWKSTVLGSVIVTV 99
              D         LGS+ + +
Sbjct: 69 ----D---DKTGKSLGSLTLPL 83

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 9/86 (10%)

Query: 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGE----EFNFSV 69
          + +++ ++ A+ L+G N+    DP   +  G +K+++S+  G+  P + E     F+ S 
Sbjct: 4  FQVRVRVIEARQLVGGNI----DPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESP 59

Query: 70 DELPVQIIV-TIYDWDIIWKSTVLGS 94
          DEL  +II  ++YD   +   T++GS
Sbjct: 60 DELFDKIIKISVYDSRSLRSDTLIGS 85

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV- 69
           + +E+  AKNLI  + NG SDPY  +          K+ +  +  +  P+W E F F + 
Sbjct: 15  LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74

Query: 70  -DELPVQIIVTIYDWDIIWKSTVLGSVIVTV-ESEGQTGAVWYTL 112
             +   ++ + ++DWD   ++  +GS+   V E        WY L
Sbjct: 75  PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGWYKL 119

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKR--FSSMVPGSRY---PMWGEEFNFSV--DEL 72
           ++ A +L   ++ GTSDPY  +    +K+  F + V   R    P++ E F F V   EL
Sbjct: 22  IIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKV--HRKTLNPVFNETFTFKVPYSEL 79

Query: 73  PVQIIV-TIYDWDIIWKSTVLGSVIVT 98
             + +V ++YD+D   K  ++G V V 
Sbjct: 80  GNKTLVFSVYDFDRFSKHDLIGEVRVP 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 13/115 (11%)

Query: 12  SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFN 66
           +A  + L ++ A+NL   ++ G SDPY  ++   E     K+ +S+   +  P + E   
Sbjct: 12  TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALV 71

Query: 67  F-----SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSP 115
           F     +VD   V +I+ + D+D +  + ++G   V   ++GQ    W   L +P
Sbjct: 72  FDVPPENVDN--VSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANP 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 25  NLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSV--DELPVQ-I 76
           NL   + NG SDP+  +    +     K  + +   +  P + EEF + +   +L  + +
Sbjct: 24  NLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTL 83

Query: 77  IVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY 110
            +T++D DI   +  +G + + + ++G+    W 
Sbjct: 84  EITVWDKDIGKSNDYIGGLQLGINAKGERLRHWL 117

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 24/109 (22%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSV--DEL 72
           +L A++L   +++G +DPY  +          K+ + +   +  P++ E F F +  +EL
Sbjct: 21  VLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80

Query: 73  P-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL-DSPSGQV 119
             + +   + D D + K+ V+G +++  ++ G  G  W  + + P  Q+
Sbjct: 81  EDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQI 129

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV---- 74
           E++ A++L+  +  G+S  Y  +    +K+ +   P    P+W E+  F+V +       
Sbjct: 5   EVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNL 64

Query: 75  QIIVTIY-DWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLD 113
            + V +Y D     + + LG V +   +     +     Y L+
Sbjct: 65  VLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLE 107

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 20/111 (18%)

Query: 23  AKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-VTIY 81
            ++L   N NG SDPY  ++ GS++  + +V  +  P W     F V +L   ++ +T++
Sbjct: 24  GRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVF 83

Query: 82  DWDIIWKSTVLG------SVIVTVESEG-------------QTGAVWYTLD 113
           D D       LG      + I+    E               TG V   LD
Sbjct: 84  DRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLD 134

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	524
KOG1032	590	consensus Uncharacterized conserved protein, conta	100.0
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.84
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.79
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.79
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.78
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.78
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.77
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.76
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.75
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.75
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.75
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.75
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.75
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.74
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.74
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.73
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.73
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.73
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.73
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.72
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.72
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.72
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.72
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.71
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.71
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.71
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.71
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.7
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.7
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.7
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.69
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.69
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.69
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.69
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.69
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.68
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.68
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.68
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.67
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.67
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.67
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.67
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.67
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.67
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.66
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.66
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.66
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.65
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.65
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.65
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.65
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.65
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.65
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.65
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.64
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.64
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.64
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.63
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.63
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.62
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.62
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.62
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.62
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.62
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.62
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.61
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.61
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.6
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.6
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.59
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.59
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.59
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.59
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.58
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.58
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.57
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.56
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.56
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.56
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.55
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.55
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.54
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.53
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.53
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.52
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.52
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.52
KOG1032	590	consensus Uncharacterized conserved protein, conta	99.51
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.51
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.5
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.49
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.49
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.49
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.48
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.47
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.45
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.45
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.43
PLN03008	868	Phospholipase D delta	99.43
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.35
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.28
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.14
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.11
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.08
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.04
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	98.97
PLN02223	537	phosphoinositide phospholipase C	98.96
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.86
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.84
PLN02952	599	phosphoinositide phospholipase C	98.84
PLN02270	808	phospholipase D alpha	98.79
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.75
PLN02230	598	phosphoinositide phospholipase C 4	98.74
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.72
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.69
PLN02222	581	phosphoinositide phospholipase C 2	98.67
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.63
PLN02228	567	Phosphoinositide phospholipase C	98.6
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.55
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.55
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.39
KOG4347	671	consensus GTPase-activating protein VRP [General f	98.16
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.04
PLN02352	758	phospholipase D epsilon	97.95
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	97.8
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.78
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.58
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.55
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.4
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.31
PF14470	96	bPH_3: Bacterial PH domain	97.31
PLN02964	644	phosphatidylserine decarboxylase	97.22
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	97.2
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	96.96
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	96.93
KOG1327	529	consensus Copine [Signal transduction mechanisms]	96.7
KOG1327	529	consensus Copine [Signal transduction mechanisms]	96.69
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	96.55
KOG3837	523	consensus Uncharacterized conserved protein, conta	95.62
cd01201	108	Neurobeachin Neurobeachin Pleckstrin homology-like	95.35
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	94.47
KOG1452	442	consensus Predicted Rho GTPase-activating protein	94.24
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	94.12
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	93.81
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	93.73
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	93.64
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	93.1
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	93.07
smart00234	206	START in StAR and phosphatidylcholine transfer pro	92.91
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	92.27
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	91.98
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	91.93
cd08871	222	START_STARD10-like Lipid-binding START domain of m	91.88
PF01852	206	START: START domain; InterPro: IPR002913 START (St	91.15
cd08905	209	START_STARD1-like Cholesterol-binding START domain	90.95
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	89.99
PF15627	156	CEP76-C2: CEP76 C2 domain	89.92
cd00177	193	START Lipid-binding START domain of mammalian STAR	89.22
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	88.95
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	88.82
cd08906	209	START_STARD3-like Cholesterol-binding START domain	87.74
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	87.04
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	86.96
PF11605	89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	86.77
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	86.6
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	86.42
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	86.12
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	85.11
cd08904	204	START_STARD6-like Lipid-binding START domain of ma	84.19
PF08567	79	TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal dom	81.9
KOG4471	717	consensus Phosphatidylinositol 3-phosphate 3-phosp	81.85
cd08872	235	START_STARD11-like Ceramide-binding START domain o	81.45
cd08910	207	START_STARD2-like Lipid-binding START domain of ma	81.35
PF11696	642	DUF3292: Protein of unknown function (DUF3292); In	80.22

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=100.00  E-value=9e-38  Score=332.21  Aligned_cols=321  Identities=21%  Similarity=0.319  Sum_probs=244.4

Q ss_pred             cccccc--ccCcccceEEeeeeeeeeccceeeEEEeecceEEEEeccCcceeEEEEeccccccccccccceecC-cEEEE
Q 009822          164 PLQTIF--NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP-AITII  240 (524)
Q Consensus       164 ~f~~~F--~lp~~e~l~~~~~c~l~~~~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~-~i~i~  240 (524)
                      .|...+  ++|+++.|+.+|+|+|+|.+++|||||++++||||||++|||+++++||+.+|+.|+|+++++++| +|+|.
T Consensus       108 ~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn~i~i~  187 (590)
T KOG1032|consen  108 NLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPNAIEIT  187 (590)
T ss_pred             hhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCcceEEe
Confidence            444444  388999999999999999999999999999999999999999999999999999999999998776 99999


Q ss_pred             EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHHHHHhhccchh-hHHhhhhhhccccCCC-C----CCC--Ccc
Q 009822          241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLE-AEKKEKAESALRAHSS-S----IGG--SRR  312 (524)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~~~~~~~~~~~-~e~~~~~~s~~~~~s~-~----~~~--s~~  312 (524)
                      +                ++.+|+|++|++||.+|.++..+.+..-.... ......+.+....+.. .    .+.  ++.
T Consensus       188 t----------------~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s  251 (590)
T KOG1032|consen  188 T----------------GTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNVDNSQSPS  251 (590)
T ss_pred             c----------------CCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccccccccCCCcc
Confidence            6                45699999999999999977555444211100 0000000000000000 0    000  000


Q ss_pred             cccccccccCCC----CCCCCCccccccceeeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCC
Q 009822          313 QAKIVEETVTKP----EKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDG  388 (524)
Q Consensus       313 ~~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~  388 (524)
                      +.....++ +..    .+.+..+++. +-.+.+..|.+++..+|.++|+ +..|+..+++.++..++...+|..... +.
T Consensus       252 ~~~~s~~~-~~~e~~~~~~~~~~~~~-~~v~~~~~~s~~~~~~~~~lf~-d~~~~~~~l~~~~~~~vs~~~~~~~~~-~~  327 (590)
T KOG1032|consen  252 ALQNSFDS-PKEEELEHDFSCSLSRL-FGVLGRLPFSAPIGAFFSLLFG-DNTFFFFFLEDQDEIQVSPIPWKGPRS-GI  327 (590)
T ss_pred             ccccccCC-Ccccccccccccccccc-ccccccccccccccccceeecc-CcceeeeccccccccccccccccCCCc-cc
Confidence            00000000 000    0111122222 2357789999999999999999 678888899999999999999998765 67


Q ss_pred             cEEEEEEEeeccCCCCCceeeEeEEEEEEecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEE
Q 009822          389 QVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHF  468 (524)
Q Consensus       389 ~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f  468 (524)
                      ..|.++|++++..++|||++.|..+|.+.+.....|+.|..++.+++|||++.|.|.+||+|.|.+.+.|++.++++|.|
T Consensus       328 ~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~~~V~~  407 (590)
T KOG1032|consen  328 LLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVSTSVEW  407 (590)
T ss_pred             eeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeecceeEEEe
Confidence            89999999999999999999999999999877667899999999999999999999999999999999999999999999


Q ss_pred             eeeceeeeeeeccH--HHHHHHHHHHHHHHHHHHHhhc
Q 009822          469 KKWCVIQFKIKTGA--VNKYKKEVELMLETARSYIKIC  504 (524)
Q Consensus       469 ~K~t~~K~~Ie~~~--~~~~~~~~~~~~~~~~~~l~~~  504 (524)
                      .|.+|.+.+++..+  .+.+-+.++.++...++..+..
T Consensus       408 ~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~  445 (590)
T KOG1032|consen  408 TKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQ  445 (590)
T ss_pred             ccCchhhccccccccchhhHHHHHHHHHhccHHHHHhh
Confidence            99999888888765  5566666777776555544443

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.84  E-value=5.1e-20  Score=158.72  Aligned_cols=111  Identities=19%  Similarity=0.280  Sum_probs=97.9

Q ss_pred             eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecC-CCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009822           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~i   92 (524)
                      |+|.|+|++|++|+..+ .|++||||++.+++.+++|+++.+ +.||.|||+|.|.+......|.|+|||+|.+++|++|
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i   80 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI   80 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence            78999999999998877 799999999999999999999876 7999999999999976667899999999999999999


Q ss_pred             EEEEEEccc-C--CCcccEEEEecC-----CCCeeEEEEEE
Q 009822           93 GSVIVTVES-E--GQTGAVWYTLDS-----PSGQVCLHIKT  125 (524)
Q Consensus        93 G~~~i~l~~-~--~~~~~~w~~L~~-----~~G~i~~~l~~  125 (524)
                      |.+.+++.. +  +...+.|++|.+     +.|+|+++|++
T Consensus        81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            999999963 4  555789999976     34888887753

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.79  E-value=1.8e-18  Score=149.04  Aligned_cols=111  Identities=24%  Similarity=0.363  Sum_probs=100.7

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG   93 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~~iG   93 (524)
                      +|+|+|++|++|+..+..|.+||||++++++...+|+++++++||.|||+|.|.+.+. ...|.|+|||++..+++++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            4789999999999999889999999999999999999999999999999999998764 678999999999998999999


Q ss_pred             EEEEEcccC--CCcccEEEEecCCCCeeEEEEEE
Q 009822           94 SVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKT  125 (524)
Q Consensus        94 ~~~i~l~~~--~~~~~~w~~L~~~~G~i~~~l~~  125 (524)
                      .+.++|+++  +.....|++|.+..|++++.+.+
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~~~G~~~~~~~~  114 (116)
T cd08376          81 RCEIDLSALPREQTHSLELELEDGEGSLLLLLTL  114 (116)
T ss_pred             EEEEeHHHCCCCCceEEEEEccCCCcEEEEEEEe
Confidence            999999987  55678999999878998777654

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.79  E-value=5.8e-19  Score=155.48  Aligned_cols=111  Identities=24%  Similarity=0.408  Sum_probs=97.7

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~i   92 (524)
                      -|.|.|+|++|.||..+|..+++||||++.+++++.+|+++.+++||+|||+|+|.+.++...|.++|||+|.++.||||
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~m   84 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFM   84 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCccccc
Confidence            48999999999999999988999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEcccCCCcccEEEEec--CCCCeeEEEEE
Q 009822           93 GSVIVTVESEGQTGAVWYTLD--SPSGQVCLHIK  124 (524)
Q Consensus        93 G~~~i~l~~~~~~~~~w~~L~--~~~G~i~~~l~  124 (524)
                      |.|+|+|.++......|+ |.  ...|....++.
T Consensus        85 G~A~I~l~p~~~~~~~~~-l~~~~~~gt~~~~v~  117 (168)
T KOG1030|consen   85 GEATIPLKPLLEAQKMDY-LKLELLTGTAIGKVL  117 (168)
T ss_pred             ceeeeccHHHHHHhhhhc-cccccCCCcEeeEEE
Confidence            999999999855555565 33  23455444333

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=2.3e-18  Score=149.43  Aligned_cols=100  Identities=21%  Similarity=0.368  Sum_probs=91.3

Q ss_pred             EEEEEEEEeec---CcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCC----
Q 009822           15 LIKLELLAAKN---LIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW----   87 (524)
Q Consensus        15 ~L~V~vi~A~~---L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~----   87 (524)
                      .|.|+|++|+|   |+.+|..|.+||||+++++.++.+|+++.+++||.|||+|.|.+......|.|+|||++..+    
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            38999999999   88999999999999999999999999999999999999999999877778999999999874    


Q ss_pred             --CCceeEEEEEEcccC--CCcccEEEEecC
Q 009822           88 --KSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        88 --~d~~iG~~~i~l~~~--~~~~~~w~~L~~  114 (524)
                        +|++||++.++|..+  +.....||+|..
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~  111 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS  111 (126)
T ss_pred             CCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence              899999999999988  445678999974

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.78  E-value=2.4e-18  Score=150.44  Aligned_cols=100  Identities=25%  Similarity=0.488  Sum_probs=90.1

Q ss_pred             EEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC------CCcEEEEEEEEcCCCCCC
Q 009822           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE------LPVQIIVTIYDWDIIWKS   89 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~------~~~~L~v~v~d~d~~~~d   89 (524)
                      +.|+|++|+||+.++..|.+||||++.++..+.+|+++++++||.|||+|.|.+..      ....|.|+|||++.+++|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            57999999999999999999999999999999999999999999999999999865      356799999999999899


Q ss_pred             ceeEEEEEEcccCC----CcccEEEEecCC
Q 009822           90 TVLGSVIVTVESEG----QTGAVWYTLDSP  115 (524)
Q Consensus        90 ~~iG~~~i~l~~~~----~~~~~w~~L~~~  115 (524)
                      ++||++.++|.++.    .....||+|.++
T Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~  110 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESK  110 (126)
T ss_pred             ceeEEEEEEHHHhhccCCCcccEEEECcCC
Confidence            99999999999863    346799999753

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.77  E-value=6.8e-18  Score=146.52  Aligned_cols=112  Identities=22%  Similarity=0.460  Sum_probs=97.8

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEECC-eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG   93 (524)
                      +|+|+|++|++|+..+..|.+||||++.+++ ...+|+++.++.||.|||+|.|.+......|.|+|||++..+++++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            4789999999999999999999999999986 567999999999999999999999876788999999999999999999


Q ss_pred             EEEEEcccC--CCcccEEEEecCC-----CCeeEEEEEEE
Q 009822           94 SVIVTVESE--GQTGAVWYTLDSP-----SGQVCLHIKTI  126 (524)
Q Consensus        94 ~~~i~l~~~--~~~~~~w~~L~~~-----~G~i~~~l~~~  126 (524)
                      .+.+++.++  +.....|++|.++     .|.|.+.+++.
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~  120 (121)
T cd04042          81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT  120 (121)
T ss_pred             EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence            999999997  5667889999653     36666666543

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.76  E-value=2.1e-17  Score=142.98  Aligned_cols=111  Identities=23%  Similarity=0.465  Sum_probs=98.6

Q ss_pred             eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009822           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG   93 (524)
                      |.|.|+|++|++|+..+..+.+||||+++++....+|++++++.||.|+|+|.|.+.+....|.|+|||++..+++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            67999999999999999899999999999998889999999999999999999999877788999999999888999999


Q ss_pred             EEEEEcccCCCcccEEEEecCC------CCeeEEEEE
Q 009822           94 SVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK  124 (524)
Q Consensus        94 ~~~i~l~~~~~~~~~w~~L~~~------~G~i~~~l~  124 (524)
                      ++.+++.++......|+.|..+      .|+|.+++.
T Consensus        81 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~  117 (119)
T cd08377          81 KVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMD  117 (119)
T ss_pred             EEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEE
Confidence            9999999986667899999653      355555554

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.75  E-value=1.2e-17  Score=144.34  Aligned_cols=110  Identities=24%  Similarity=0.398  Sum_probs=94.1

Q ss_pred             eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeec-CCCCCccccEEEEEecC-CCcEEEEEEEEcCCCCCCce
Q 009822           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV   91 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~d~~~~d~~   91 (524)
                      |.|.|+|++|++|+..+..+.+||||++.+++...+|+++. +++||.|||.|.|.+.. ....|.|+|||++..+ +++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            67999999999999999999999999999998888999875 47999999999999875 3567999999999876 899


Q ss_pred             eEEEEEEcccC--CCcccEEEEecCC---CCeeEEEEE
Q 009822           92 LGSVIVTVESE--GQTGAVWYTLDSP---SGQVCLHIK  124 (524)
Q Consensus        92 iG~~~i~l~~~--~~~~~~w~~L~~~---~G~i~~~l~  124 (524)
                      ||++.+++.++  +.....|++|..+   .|+|.+++.
T Consensus        80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~  117 (118)
T cd08681          80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT  117 (118)
T ss_pred             eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEE
Confidence            99999999987  4456899999753   356555554

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.75  E-value=1.5e-17  Score=145.68  Aligned_cols=111  Identities=21%  Similarity=0.370  Sum_probs=95.0

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCC----CcEEEEEEEEcCCCC-CC
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIW-KS   89 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~----~~~L~v~v~d~d~~~-~d   89 (524)
                      .|.|+|++|++|++.+..|.+||||++.+++..++|+++.++.||.|||.|.|.+...    ...|.|+|||++.++ ++
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            3789999999999999889999999999999999999999999999999999998643    256999999999887 89


Q ss_pred             ceeEEEEEEcccC---CCcccEEEEecCC------CCeeEEEEEE
Q 009822           90 TVLGSVIVTVESE---GQTGAVWYTLDSP------SGQVCLHIKT  125 (524)
Q Consensus        90 ~~iG~~~i~l~~~---~~~~~~w~~L~~~------~G~i~~~l~~  125 (524)
                      ++||++.++++++   +.....||+|..+      .|++.+++.+
T Consensus        81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  125 (127)
T cd04022          81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI  125 (127)
T ss_pred             CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence            9999999999987   3446799999753      3665555543

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.75  E-value=1.8e-17  Score=145.28  Aligned_cols=112  Identities=24%  Similarity=0.427  Sum_probs=98.1

Q ss_pred             eEEEEEEEEeecCcCCCC--CCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC-CCcEEEEEEEEcCCCCCCc
Q 009822           14 YLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST   90 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~--~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~d~~~~d~   90 (524)
                      |+|.|+|++|++|+..+.  .+.+||||.+.++....+|++++++.+|.|||+|.|.+.. ....|.|+|||++..++++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            689999999999999988  8899999999999999999999999999999999999876 4678999999999988999


Q ss_pred             eeEEEEEEcccCC-----CcccEEEEecCC--------CCeeEEEEEE
Q 009822           91 VLGSVIVTVESEG-----QTGAVWYTLDSP--------SGQVCLHIKT  125 (524)
Q Consensus        91 ~iG~~~i~l~~~~-----~~~~~w~~L~~~--------~G~i~~~l~~  125 (524)
                      +||++.+++.++.     .....||+|.++        .|+|.+++.|
T Consensus        81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            9999999999872     335789999764        4666666543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.75  E-value=2.5e-17  Score=142.82  Aligned_cols=109  Identities=27%  Similarity=0.440  Sum_probs=94.0

Q ss_pred             EEEEEEEeecCcCCC-CCCCCCcEEEEEECCe-EEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009822           16 IKLELLAAKNLIGAN-LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (524)
Q Consensus        16 L~V~vi~A~~L~~~d-~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG   93 (524)
                      |.|+|++|+||++.+ ..|.+||||.+.++.. ..+|+++++++||.|||+|.|.+.+....|.|.|||++.++++++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            689999999999874 4578999999999765 46899999999999999999999876678999999999999999999


Q ss_pred             EEEEEcccC--CCcccEEEEecCC------CCeeEEEEE
Q 009822           94 SVIVTVESE--GQTGAVWYTLDSP------SGQVCLHIK  124 (524)
Q Consensus        94 ~~~i~l~~~--~~~~~~w~~L~~~------~G~i~~~l~  124 (524)
                      .+.++++++  +...+.||+|++.      .|+|++.++
T Consensus        82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd08401          82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR  120 (121)
T ss_pred             EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence            999999988  4456789999863      477766654

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.75  E-value=1.1e-17  Score=142.08  Aligned_cols=100  Identities=17%  Similarity=0.261  Sum_probs=86.7

Q ss_pred             CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC----eEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEE
Q 009822           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (524)
Q Consensus        10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d   82 (524)
                      .+..+.|+|+|++|++|+   ..|.+||||++++..    .+.+|++.++++||.|||+|.|++..   ....|.|+|||
T Consensus        10 ~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d   86 (118)
T cd08677          10 DKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRC   86 (118)
T ss_pred             cCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence            466799999999999998   246799999999853    46689999999999999999999864   35569999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEe
Q 009822           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L  112 (524)
                      +|+++++++||++.++++++  ..+..+|..|
T Consensus        87 ~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          87 CDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            99999999999999999976  6777888765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.74  E-value=5e-17  Score=143.69  Aligned_cols=115  Identities=23%  Similarity=0.407  Sum_probs=99.0

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS   89 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d   89 (524)
                      ...|.|.|+|++|++|++.+..|.+||||++.+++...+|++++++.||.|||+|.|.+.+. ...|.|+|||++..++|
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d   91 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD   91 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence            45689999999999999999999999999999999999999999999999999999998754 45699999999999999


Q ss_pred             ceeEEEEEEcccCC-------CcccEEEEecC-CCCeeEEEEEE
Q 009822           90 TVLGSVIVTVESEG-------QTGAVWYTLDS-PSGQVCLHIKT  125 (524)
Q Consensus        90 ~~iG~~~i~l~~~~-------~~~~~w~~L~~-~~G~i~~~l~~  125 (524)
                      ++||++.+++.++.       .....|..|.. ..|+|++++.+
T Consensus        92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          92 DFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            99999999998772       12235666654 45999888765

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.74  E-value=4.9e-17  Score=146.00  Aligned_cols=112  Identities=17%  Similarity=0.339  Sum_probs=95.9

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecC-CCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCcee
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVL   92 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~~i   92 (524)
                      .|.|+|++|++|++++..|.+||||++.++++..+|++..+ ++||.|||.|.|.+.++ ...|.|+|||++..+++++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            37899999999999999999999999999999999999976 69999999999998654 45799999999988889999


Q ss_pred             EEEEEEcccCC------CcccEEEEecCCC------------CeeEEEEEEE
Q 009822           93 GSVIVTVESEG------QTGAVWYTLDSPS------------GQVCLHIKTI  126 (524)
Q Consensus        93 G~~~i~l~~~~------~~~~~w~~L~~~~------------G~i~~~l~~~  126 (524)
                      |++.++|..+.      ....+||+|....            |+|++.|.+.
T Consensus        81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence            99999999872      3358999997643            5666666544

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.73  E-value=6.7e-17  Score=141.30  Aligned_cols=109  Identities=23%  Similarity=0.420  Sum_probs=92.9

Q ss_pred             EEEEEEEeecCcCCCCCCCCCcEEEEEECC--eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009822           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG   93 (524)
                      |.|+|++|+||+.  ..|.+||||++.++.  ...+|+++++++||.|||.|.|.+......|.|+|||++..+++++||
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG   78 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG   78 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence            5799999999987  678999999999973  567999999999999999999999765678999999999998999999


Q ss_pred             EEEEEcccC--CCcccEEEEecCC-------CCeeEEEEEEE
Q 009822           94 SVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTI  126 (524)
Q Consensus        94 ~~~i~l~~~--~~~~~~w~~L~~~-------~G~i~~~l~~~  126 (524)
                      ++.+++.++  ......|++|.++       .|++.+++.+.
T Consensus        79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~  120 (126)
T cd08678          79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFM  120 (126)
T ss_pred             EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEe
Confidence            999999987  4556789999754       35555555543

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.73  E-value=6.8e-17  Score=140.09  Aligned_cols=111  Identities=24%  Similarity=0.465  Sum_probs=97.5

Q ss_pred             eEEEEEEEEeecCcCCCC------CCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC-CCcEEEEEEEEcCCC
Q 009822           14 YLIKLELLAAKNLIGANL------NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDII   86 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~------~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~d~~   86 (524)
                      |+|.|+|++|++|+..+.      .|.+||||++++++...+|++++++.+|.|+|.|.|.+.+ ....|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            679999999999998875      3689999999999988999999999999999999999864 467799999999987


Q ss_pred             CCCceeEEEEEEcccC--CCcccEEEEecC-CCCeeEEEEEE
Q 009822           87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKT  125 (524)
Q Consensus        87 ~~d~~iG~~~i~l~~~--~~~~~~w~~L~~-~~G~i~~~l~~  125 (524)
                       ++++||.+.+++.++  ......|++|.+ ..|++++++.|
T Consensus        81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence             889999999999987  444679999986 57998887754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.73  E-value=4e-17  Score=141.69  Aligned_cols=99  Identities=22%  Similarity=0.350  Sum_probs=87.3

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEe-c--C-CCcEEEEEEEEc
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-D--E-LPVQIIVTIYDW   83 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v-~--~-~~~~L~v~v~d~   83 (524)
                      .+.|.|+|++|++|++++ .+.+||||++++.     ..+.+|++++++.||.|||+|.|.+ .  + ....|.|+|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            578999999999999999 8999999999985     3467899999999999999999987 2  1 346799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEe
Q 009822           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L  112 (524)
                      +..+++++||++.++|.++  ......||+|
T Consensus        91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            9999999999999999998  4446889987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.73  E-value=8e-17  Score=139.74  Aligned_cols=109  Identities=25%  Similarity=0.437  Sum_probs=94.1

Q ss_pred             EEEEEEEeecCcCCCCCCCCCcEEEEEECCeE-EeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeEE
Q 009822           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGS   94 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG~   94 (524)
                      |.|+|++|++|++++..|.+||||++.+++.. .+|+++++++||.|||.|.|.+......|.|+|||++..++|++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            78999999999999999999999999997654 59999999999999999999987766889999999999999999999


Q ss_pred             EEEEcccCC---CcccEEEEecCC------CCeeEEEEE
Q 009822           95 VIVTVESEG---QTGAVWYTLDSP------SGQVCLHIK  124 (524)
Q Consensus        95 ~~i~l~~~~---~~~~~w~~L~~~------~G~i~~~l~  124 (524)
                      +.++++++.   ...+.|++|.+.      .|+|++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            999988772   236799999752      466655543

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.72  E-value=7.8e-17  Score=138.23  Aligned_cols=104  Identities=22%  Similarity=0.415  Sum_probs=89.3

Q ss_pred             eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009822           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG   93 (524)
                      +.|.|+|++|++|++++   ..||||++++++.+.+|++.++ .||.|||+|.|.+.+....|.|+|||+|.+ .|++||
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG   76 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG   76 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence            57999999999997654   5689999999999999999987 499999999999988778899999999965 899999


Q ss_pred             EEEEEcccC----CCcccEEEEecC----CCCeeEEE
Q 009822           94 SVIVTVESE----GQTGAVWYTLDS----PSGQVCLH  122 (524)
Q Consensus        94 ~~~i~l~~~----~~~~~~w~~L~~----~~G~i~~~  122 (524)
                      ++.|+|.++    .....+||+|.+    +.|++.++
T Consensus        77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~~~  113 (127)
T cd08394          77 TVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIVGT  113 (127)
T ss_pred             EEEEEhHHcccCCCCCCCccEecChHHhccCCeEecc
Confidence            999999987    233479999986    45766544

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.72  E-value=1.8e-16  Score=138.51  Aligned_cols=100  Identities=17%  Similarity=0.305  Sum_probs=91.8

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~i   92 (524)
                      .++|+|+|++|++|...+..|.+||||.+.+++...+|++++++.||.|||.|.|.+......|.|+|||++.. +|++|
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l   80 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL   80 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence            47899999999999999999999999999999999999999999999999999999887778899999999876 58999


Q ss_pred             EEEEEEcccCCCcccEEEEec
Q 009822           93 GSVIVTVESEGQTGAVWYTLD  113 (524)
Q Consensus        93 G~~~i~l~~~~~~~~~w~~L~  113 (524)
                      |.+.+++.+.......|++|.
T Consensus        81 G~~~~~l~~~~~~~~~~~~l~  101 (126)
T cd04046          81 GQATLSADPNDSQTLRTLPLR  101 (126)
T ss_pred             EEEEEecccCCCcCceEEEcc
Confidence            999999998866677889985

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.72  E-value=1.4e-16  Score=138.69  Aligned_cols=99  Identities=29%  Similarity=0.592  Sum_probs=90.2

Q ss_pred             EEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEE
Q 009822           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGS   94 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~~iG~   94 (524)
                      |+|+|++|++|+.++..+.+||||.+++++...+|+++++++||.|||+|.|.+... ...|.|+|||++..+++++||+
T Consensus         2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~   81 (123)
T cd04025           2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGK   81 (123)
T ss_pred             EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEE
Confidence            789999999999999889999999999998889999999999999999999998764 4679999999999999999999


Q ss_pred             EEEEcccC--CCcccEEEEecC
Q 009822           95 VIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        95 ~~i~l~~~--~~~~~~w~~L~~  114 (524)
                      +.++++++  ......|+.|.+
T Consensus        82 ~~~~l~~l~~~~~~~~w~~L~~  103 (123)
T cd04025          82 VVFSIQTLQQAKQEEGWFRLLP  103 (123)
T ss_pred             EEEEHHHcccCCCCCCEEECCC
Confidence            99999988  344688999976

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.72  E-value=9.2e-17  Score=138.96  Aligned_cols=111  Identities=23%  Similarity=0.381  Sum_probs=95.3

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST   90 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~   90 (524)
                      .|.|+|++|++|+..+..|.+||||++.+.   ....+|++++++.||.|||+|.|.+... ...|.|+|||++.. +++
T Consensus         1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~   79 (119)
T cd04036           1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD   79 (119)
T ss_pred             CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence            378999999999999988999999999985   3557899999999999999999998643 45699999999988 899


Q ss_pred             eeEEEEEEcccC--CCcccEEEEecCC-CCeeEEEEEEE
Q 009822           91 VLGSVIVTVESE--GQTGAVWYTLDSP-SGQVCLHIKTI  126 (524)
Q Consensus        91 ~iG~~~i~l~~~--~~~~~~w~~L~~~-~G~i~~~l~~~  126 (524)
                      +||++.++++++  +.....|++|.++ .|++.+++.+.
T Consensus        80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~~  118 (119)
T cd04036          80 HLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLLE  118 (119)
T ss_pred             ccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEee
Confidence            999999999987  4567889999764 58877777543

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.71  E-value=1e-16  Score=142.43  Aligned_cols=104  Identities=16%  Similarity=0.292  Sum_probs=90.1

Q ss_pred             ceEEEEEEEEeecCcCCC-CCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEE-EcCC
Q 009822           13 AYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWDI   85 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d-~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~-d~d~   85 (524)
                      .+.|.|+|++|+||++.+ ..|.+||||++++..     .+.+|+++++++||.|||+|.|.+......|.|+|| |++.
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~  107 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence            478999999999999874 578899999999842     356899999999999999999999855677999999 6888


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEecCCC
Q 009822           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (524)
Q Consensus        86 ~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~~  116 (524)
                      .+++++||++.|+|+.+  +.....||+|.++.
T Consensus       108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~  140 (146)
T cd04028         108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS  140 (146)
T ss_pred             CCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence            88899999999999988  45567999998643

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=1.5e-16  Score=139.32  Aligned_cols=111  Identities=29%  Similarity=0.525  Sum_probs=96.1

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCC--------
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII--------   86 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~--------   86 (524)
                      .|+|+|++|++|+..+..|.+||||++.++....+|+++.++++|.|||+|.|.+..+...|.|+|||+|..        
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            589999999999999999999999999998888899999999999999999999876667899999999853        


Q ss_pred             ---CCCceeEEEEEEcccCCCcccEEEEecCCC--CeeEEEEEE
Q 009822           87 ---WKSTVLGSVIVTVESEGQTGAVWYTLDSPS--GQVCLHIKT  125 (524)
Q Consensus        87 ---~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~--G~i~~~l~~  125 (524)
                         +++++||++.+++.++......||.|.++.  +.++++|.+
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~~~~~~~~G~i~~  125 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRL  125 (127)
T ss_pred             ccccCCCcceEEEEEhHHccCCCCeEEECccCCCCCcEeEEEEE
Confidence               468999999999999877778999998744  335555543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=1.2e-16  Score=137.41  Aligned_cols=99  Identities=15%  Similarity=0.304  Sum_probs=84.4

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----C--eEEeeeeecCCCCCccccEEEEEecCC----CcEEEEEEEEc
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-----S--EKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW   83 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~--~~~~T~~~~~t~nP~W~e~f~f~v~~~----~~~L~v~v~d~   83 (524)
                      .|+|+|++|++|+..+ .|.+||||++++.     .  ++++|+++.+++||.|||+|.|.+...    ...|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            3899999999999988 4999999999972     2  345799999999999999999998632    23499999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~  114 (524)
                      +..+++++||++.+++..+  +.....|++|..
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~  112 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR  112 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence            9888899999999999998  455678999965

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.71  E-value=1.4e-16  Score=138.04  Aligned_cols=105  Identities=23%  Similarity=0.430  Sum_probs=89.8

Q ss_pred             EEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC-CCcEEEEEEEEcCCCCCCceeEE
Q 009822           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLGS   94 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~d~~~~d~~iG~   94 (524)
                      |.|+|++|++|+.+    .+||||.+.+++...+|++++++.||.|||+|.|.+.. ....|.++|||++.. ++++||+
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~   76 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG   76 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence            78999999999887    78999999999988999999999999999999999876 456799999999977 7899999


Q ss_pred             EEEEcccCCC-------cccEEEEecCCC-----CeeEEEEEE
Q 009822           95 VIVTVESEGQ-------TGAVWYTLDSPS-----GQVCLHIKT  125 (524)
Q Consensus        95 ~~i~l~~~~~-------~~~~w~~L~~~~-----G~i~~~l~~  125 (524)
                      +.++++++..       ....||+|.+..     |+|+++|.+
T Consensus        77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            9999998722       246899997644     666666543

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.70  E-value=1.2e-16  Score=139.38  Aligned_cols=103  Identities=21%  Similarity=0.368  Sum_probs=89.0

Q ss_pred             CCceEEEEEEEEeecCcCCCCC-CCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~-g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~   81 (524)
                      ...+.|.|+|++|+||++++.. |.+||||++++.     ..+.+|+++++++||.|||+|.|.+..   ....|.|+||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~   91 (125)
T cd08393          12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW   91 (125)
T ss_pred             CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence            4457899999999999999975 899999999984     234689999999999999999999853   2457999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEec
Q 009822           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~  113 (524)
                      |++..+++++||++.++|.++  ......||+|+
T Consensus        92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             eCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            999999999999999999987  44567899984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.70  E-value=2.1e-16  Score=139.54  Aligned_cols=100  Identities=23%  Similarity=0.391  Sum_probs=88.1

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-------EEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCC
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~   87 (524)
                      +|+|+|++|++|+.++..|.+||||++.+.+.       ..+|++++++.||.|||+|.|.+......|.|+|||++..+
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            48999999999999998999999999998654       46899999999999999999998766678999999999999


Q ss_pred             CCceeEEEEEEcccCCC--------cccEEEEecC
Q 009822           88 KSTVLGSVIVTVESEGQ--------TGAVWYTLDS  114 (524)
Q Consensus        88 ~d~~iG~~~i~l~~~~~--------~~~~w~~L~~  114 (524)
                      ++++||++.++++++..        ....||+|.+
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~  115 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP  115 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCccccccccchheeeee
Confidence            99999999999998721        2358999985

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.70  E-value=2.3e-16  Score=137.59  Aligned_cols=103  Identities=17%  Similarity=0.294  Sum_probs=88.8

Q ss_pred             CCceEEEEEEEEeecCcCCCC-CCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~-~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~   81 (524)
                      +..+.|.|+|++|+||++.+. .|.+||||++++.     ..+.+|+++++++||.|||+|.|.+..   ....|.|+||
T Consensus        12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            456889999999999998875 5789999999984     234689999999999999999999854   2456999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEec
Q 009822           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~  113 (524)
                      |++..+++++||++.++|..+  ......|++|.
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             ECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            999999999999999999988  55568999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.69  E-value=5.1e-16  Score=140.82  Aligned_cols=112  Identities=20%  Similarity=0.383  Sum_probs=94.8

Q ss_pred             ceEEEEEEEEeecCcCCC------------------------------CCCCCCcEEEEEECCeE-EeeeeecCCCCCcc
Q 009822           13 AYLIKLELLAAKNLIGAN------------------------------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMW   61 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d------------------------------~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W   61 (524)
                      .|+|.|+|++|++|+.+|                              ..|++||||.+.+++.. .+|+++.++.||.|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            488999999999999987                              35678999999998755 59999999999999


Q ss_pred             ccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEecCC-------CCeeEEEEEE
Q 009822           62 GEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKT  125 (524)
Q Consensus        62 ~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~-------~G~i~~~l~~  125 (524)
                      ||+|.|.+......|.|.|||++..+ +++||.+.++++++  +...+.|++|.+.       .|+|++.+++
T Consensus        86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f  157 (158)
T cd04015          86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF  157 (158)
T ss_pred             ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence            99999998777778999999999875 57999999999987  5567899999642       3566666654

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.69  E-value=3.3e-16  Score=136.51  Aligned_cols=103  Identities=22%  Similarity=0.418  Sum_probs=91.1

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEEcC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d~d   84 (524)
                      +..+.|.|+|++|++|++++..|.+||||++.+.   ....+|++++++.||.|+|+|.|.+...   ...|.|+|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~   92 (124)
T cd08387          13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence            4568999999999999999999999999999983   3457899999999999999999997642   457999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEec
Q 009822           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (524)
Q Consensus        85 ~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~  113 (524)
                      .++++++||++.++++++  ....+.||+|+
T Consensus        93 ~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          93 QFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            999999999999999998  55678999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.69  E-value=2.4e-16  Score=137.81  Aligned_cols=103  Identities=18%  Similarity=0.382  Sum_probs=88.6

Q ss_pred             CCceEEEEEEEEeecCcCCCCC-CCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~-g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~   81 (524)
                      ...+.|.|+|++|+||++++.. |.+||||++++.     ..+++|+++++++||.|||+|.|.+..   ....|.+.||
T Consensus        12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~   91 (128)
T cd08392          12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW   91 (128)
T ss_pred             CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence            4567999999999999999875 999999999984     235689999999999999999999854   2467999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCC-----CcccEEEEec
Q 009822           82 DWDIIWKSTVLGSVIVTVESEG-----QTGAVWYTLD  113 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~~-----~~~~~w~~L~  113 (524)
                      |++.++++++||++.|+|+++.     .....||+|.
T Consensus        92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          92 HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             eCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            9999999999999999999872     3567899973

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.69  E-value=8.1e-16  Score=136.08  Aligned_cols=113  Identities=19%  Similarity=0.416  Sum_probs=94.0

Q ss_pred             eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC----------CCcEEEEEEEEc
Q 009822           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----------LPVQIIVTIYDW   83 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~----------~~~~L~v~v~d~   83 (524)
                      +.|+|+|++|++|++++..|.+||||++.+++...+|+++++++||.|||.|.|.+..          ....|.|+|||+
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            5789999999999999999999999999999999999999999999999999997432          124699999999


Q ss_pred             CCCCCCceeEEEEE-EcccC-----CCcccEEEEecC---CCCeeEEEEEEE
Q 009822           84 DIIWKSTVLGSVIV-TVESE-----GQTGAVWYTLDS---PSGQVCLHIKTI  126 (524)
Q Consensus        84 d~~~~d~~iG~~~i-~l~~~-----~~~~~~w~~L~~---~~G~i~~~l~~~  126 (524)
                      +..++|++||++.+ ++..+     .....+|++|..   ..|+|.+++.+.
T Consensus        81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~  132 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELI  132 (135)
T ss_pred             cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEE
Confidence            99999999999987 33333     245679999974   247777766654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.69  E-value=1.1e-15  Score=133.51  Aligned_cols=110  Identities=22%  Similarity=0.343  Sum_probs=91.4

Q ss_pred             eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeE-EeeeeecCCCCCccccEEEEEecCCC-cEEEEEEEEcCCCCCCce
Q 009822           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDIIWKSTV   91 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~v~v~d~d~~~~d~~   91 (524)
                      ..|.|+|++|+||++.   +.+||||.+.+++.. .+|++ +++.||.|||+|.|.+.... ..+.|.|||++..+++++
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~   79 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE   79 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence            4699999999999875   478999999998754 57876 46899999999999865433 568999999999999999


Q ss_pred             eEEEEEEcccC--CCcccEEEEecCC-------CCeeEEEEEEEe
Q 009822           92 LGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK  127 (524)
Q Consensus        92 iG~~~i~l~~~--~~~~~~w~~L~~~-------~G~i~~~l~~~~  127 (524)
                      ||.+.++|+.+  +...+.|++|.+.       .|+|++.+++..
T Consensus        80 iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          80 IAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             EEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            99999999987  4556799999753       288888887753

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.68  E-value=3.4e-16  Score=136.59  Aligned_cols=103  Identities=21%  Similarity=0.376  Sum_probs=89.4

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecC----CCcEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY   81 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~v~   81 (524)
                      +..+.|.|+|++|++|+..+..+.+||||++.+..     ...+|++++++.||.|||+|.|.+..    ....|.|+||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~   92 (125)
T cd04031          13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence            45688999999999999999889999999999853     45689999999999999999998533    2467999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC-CCcccEEEEec
Q 009822           82 DWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD  113 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~-~~~~~~w~~L~  113 (524)
                      |++..+++++||++.++|.+. ......||+|+
T Consensus        93 d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~  125 (125)
T cd04031          93 DYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ  125 (125)
T ss_pred             eCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence            999998999999999999985 44557899985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.68  E-value=3.7e-16  Score=132.02  Aligned_cols=97  Identities=26%  Similarity=0.332  Sum_probs=87.0

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG   93 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~~iG   93 (524)
                      +|.|+|++|++|+..+..+.+||||++++++...+|+++.++.||.|||.|.|.+..+ ...|.|+|||++.   +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            4889999999999998889999999999999999999999999999999999999763 5679999999886   78999


Q ss_pred             EEEEEcccC--C--CcccEEEEecC
Q 009822           94 SVIVTVESE--G--QTGAVWYTLDS  114 (524)
Q Consensus        94 ~~~i~l~~~--~--~~~~~w~~L~~  114 (524)
                      ++.++|.++  .  ...+.||+|.+
T Consensus        78 ~~~i~l~~l~~~~~~~~~~w~~L~~  102 (105)
T cd04050          78 SLTLPLSELLKEPDLTLDQPFPLDN  102 (105)
T ss_pred             EEEEEHHHhhccccceeeeeEecCC
Confidence            999999987  2  24679999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.68  E-value=4.1e-16  Score=139.38  Aligned_cols=99  Identities=21%  Similarity=0.390  Sum_probs=85.3

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEec---------------CC-C
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVD---------------EL-P   73 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~---------------~~-~   73 (524)
                      .|.|+|++|++|+.  ..|.+||||++++..     ..++|+++++++||.|||+|.|.+.               +. .
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            37899999999988  568999999999865     5678999999999999999999984               11 2


Q ss_pred             cEEEEEEEEcCCCCCCceeEEEEEEcccCC---CcccEEEEecCC
Q 009822           74 VQIIVTIYDWDIIWKSTVLGSVIVTVESEG---QTGAVWYTLDSP  115 (524)
Q Consensus        74 ~~L~v~v~d~d~~~~d~~iG~~~i~l~~~~---~~~~~w~~L~~~  115 (524)
                      ..|.|.|||++..++++|||++.|++..+.   .....||+|.++
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~  123 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR  123 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence            459999999999889999999999999983   357899999864

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.67  E-value=4.2e-16  Score=135.19  Aligned_cols=103  Identities=14%  Similarity=0.211  Sum_probs=89.3

Q ss_pred             CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC------CeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEE
Q 009822           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (524)
Q Consensus        10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~------~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v   80 (524)
                      .+..+.|.|+|++|+||++.+..|.+||||++++-      ..+.+|+++++++||.|||+|.|.+..   ....|.|+|
T Consensus        10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V   89 (124)
T cd08680          10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV   89 (124)
T ss_pred             CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence            35668899999999999999888999999999973      236789999999999999999999864   356799999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC---CCcccEEEEe
Q 009822           81 YDWDIIWKSTVLGSVIVTVESE---GQTGAVWYTL  112 (524)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~~---~~~~~~w~~L  112 (524)
                      ||++..+++++||.+.|+|+++   ......||+|
T Consensus        90 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          90 CSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             EeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            9999999999999999999987   2346789876

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.67  E-value=6.4e-16  Score=134.69  Aligned_cols=103  Identities=23%  Similarity=0.412  Sum_probs=90.5

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d   84 (524)
                      ...+.|.|+|++|+||++++..|.+||||++.+.   ....+|++++++.||.|||+|.|.+..   ....|.|+|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d   92 (124)
T cd08385          13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            3457899999999999999999999999999984   245689999999999999999999754   2457999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEec
Q 009822           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (524)
Q Consensus        85 ~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~  113 (524)
                      .++++++||++.++++++  +....+|++|.
T Consensus        93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            999999999999999987  56678999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.67  E-value=1.4e-15  Score=132.85  Aligned_cols=112  Identities=25%  Similarity=0.479  Sum_probs=95.8

Q ss_pred             eEEEEEEEEeecCcCCCCCCCCCcEEEEEECC---eEEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCC
Q 009822           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS   89 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d   89 (524)
                      +.|+|+|++|++|+..+..+.+||||.+.+..   ...+|+++++++||.|||+|.|.+... ...|.|+|||++..+++
T Consensus         1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~   80 (126)
T cd04043           1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH   80 (126)
T ss_pred             CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence            36899999999999999999999999998764   356899999999999999999998763 56799999999998899


Q ss_pred             ceeEEEEEEcccC-----CCcccEEEEecCCCCeeEEEEEEE
Q 009822           90 TVLGSVIVTVESE-----GQTGAVWYTLDSPSGQVCLHIKTI  126 (524)
Q Consensus        90 ~~iG~~~i~l~~~-----~~~~~~w~~L~~~~G~i~~~l~~~  126 (524)
                      ++||++.++|++.     +.....|++|.+ .|++++.+.+.
T Consensus        81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-~g~i~l~~~~~  121 (126)
T cd04043          81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT-QGRLLLRVSME  121 (126)
T ss_pred             ceEEEEEEecCHHHcCCCCCCceEEEEcCC-CCeEEEEEEEe
Confidence            9999999999864     224578999975 78887776654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.67  E-value=2.8e-16  Score=134.17  Aligned_cols=99  Identities=18%  Similarity=0.294  Sum_probs=86.4

Q ss_pred             eEEEEEEEEeecCcCCCCC-CCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecC----CCcEEEEEEEEcCC
Q 009822           14 YLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDI   85 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~-g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~v~d~d~   85 (524)
                      |+|.|+|++|++|+..+.. |.+||||++.+.   ....+|+++++++||.|||.|.|.+..    ....|.|+|||+|.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999999987 899999999984   345789999999999999999998754    24679999999999


Q ss_pred             CCCCceeEEEEEEcccCCCcccEEEEec
Q 009822           86 IWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (524)
Q Consensus        86 ~~~d~~iG~~~i~l~~~~~~~~~w~~L~  113 (524)
                      .++|++||++.+++.++. ....|+++.
T Consensus        81 ~~~dd~lG~~~i~l~~l~-~~~~~~~~~  107 (111)
T cd04041          81 FTADDRLGRVEIDLKELI-EDRNWMGRR  107 (111)
T ss_pred             CCCCCcceEEEEEHHHHh-cCCCCCccc
Confidence            999999999999999985 345688775

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.67  E-value=1.8e-15  Score=133.42  Aligned_cols=112  Identities=21%  Similarity=0.364  Sum_probs=97.4

Q ss_pred             ceEEEEEEEEeecCcCCCCC----------CCCCcEEEEEECCeE-EeeeeecCCCCCccccEEEEEecCCCcEEEEEEE
Q 009822           13 AYLIKLELLAAKNLIGANLN----------GTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY   81 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~----------g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~   81 (524)
                      .|.|.|+|++|++|++.+..          |.+||||++.+++.. .+|++++++.+|.|||+|.|.+.+ ...|.|.||
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v~   81 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTVF   81 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEEE
Confidence            47899999999999988863          679999999998765 588999999999999999999973 678999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCC----CcccEEEEecCCCCeeEEEEEEE
Q 009822           82 DWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDSPSGQVCLHIKTI  126 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~~----~~~~~w~~L~~~~G~i~~~l~~~  126 (524)
                      |++..+++++||.+.++|+++.    ...+.|++|. +.|++++.+.+.
T Consensus        82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~-~~G~l~l~~~~~  129 (132)
T cd04014          82 HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE-PQGKLHVKIELK  129 (132)
T ss_pred             eCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc-CCcEEEEEEEEe
Confidence            9998889999999999999872    3468999998 479998888765

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.67  E-value=4.7e-16  Score=132.56  Aligned_cols=99  Identities=21%  Similarity=0.387  Sum_probs=87.7

Q ss_pred             EEEEEEEeecCcCCCC-CCCCCcEEEEEECCeEEeeeeecCCCCCcc-ccEEEEEecCC---CcEEEEEEEEcCCCCCCc
Q 009822           16 IKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMW-GEEFNFSVDEL---PVQIIVTIYDWDIIWKST   90 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~-~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W-~e~f~f~v~~~---~~~L~v~v~d~d~~~~d~   90 (524)
                      |.|+|++|++|+.++. .|.+||||++++++...+|+++++++||.| ||+|.|.+...   ...|.|+|||++..++++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            5799999999999884 788999999999998899999999999999 99999998652   367999999999999999


Q ss_pred             eeEEEEEEcccCCC-----cccEEEEecC
Q 009822           91 VLGSVIVTVESEGQ-----TGAVWYTLDS  114 (524)
Q Consensus        91 ~iG~~~i~l~~~~~-----~~~~w~~L~~  114 (524)
                      +||++.+++.++..     ....||+|..
T Consensus        81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            99999999998822     3678999853

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.66  E-value=2e-15  Score=131.28  Aligned_cols=110  Identities=24%  Similarity=0.357  Sum_probs=92.8

Q ss_pred             EEEEEEEeecCcCCCCCCCCCcEEEEEEC-CeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCC--Ccee
Q 009822           16 IKLELLAAKNLIGANLNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK--STVL   92 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~--d~~i   92 (524)
                      |+|+|++|++|+.++..|.+||||++.++ ....+|+++++++||.|||+|.|.+.. ...|.|+|||++..++  +++|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence            78999999999999999999999999996 667899999999999999999999975 7789999999998875  5799


Q ss_pred             EEEEEEcccC---CCcccEEEEecCC----CCeeEEEEEEE
Q 009822           93 GSVIVTVESE---GQTGAVWYTLDSP----SGQVCLHIKTI  126 (524)
Q Consensus        93 G~~~i~l~~~---~~~~~~w~~L~~~----~G~i~~~l~~~  126 (524)
                      |++.+++.++   ......|++|...    .|.+.+++.+.
T Consensus        81 G~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~  121 (123)
T cd08382          81 GCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVS  121 (123)
T ss_pred             eEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEE
Confidence            9999999997   2234679999542    35556666543

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.66  E-value=8.1e-16  Score=130.37  Aligned_cols=89  Identities=18%  Similarity=0.182  Sum_probs=80.1

Q ss_pred             eEEEEEEEEeecCcCCCCC----CCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC--CCcEEEEEEEEcCCCC
Q 009822           14 YLIKLELLAAKNLIGANLN----GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDIIW   87 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~----g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~v~d~d~~~   87 (524)
                      |+|.|+|++|++|++.+..    +.+||||+++++...++|+++++++||.|||.|.|.+..  ....|.|+|||++..+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            6899999999999988642    358999999999888999999999999999999999854  3346999999999999


Q ss_pred             CCceeEEEEEEcccC
Q 009822           88 KSTVLGSVIVTVESE  102 (524)
Q Consensus        88 ~d~~iG~~~i~l~~~  102 (524)
                      +|++||++.++|.++
T Consensus        81 ~dd~IG~~~l~L~~l   95 (108)
T cd04039          81 FNDYVATGSLSVQEL   95 (108)
T ss_pred             CCcceEEEEEEHHHH
Confidence            999999999999987

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.66  E-value=1.4e-16  Score=123.69  Aligned_cols=66  Identities=30%  Similarity=0.651  Sum_probs=48.6

Q ss_pred             ccccccccCcccceEEeeeeeeee-ccceeeEEEeecceEEEEeccCccee-EEEEeccccccccccc
Q 009822          164 PLQTIFNLLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ  229 (524)
Q Consensus       164 ~f~~~F~lp~~e~l~~~~~c~l~~-~~~~~Gr~yit~~~~cF~s~~~g~~~-~~~i~~~~i~~i~k~~  229 (524)
                      .|++.|+||.+|.|+.+|.|++.+ .++.+|+||||+++|||+|+.+|..+ +++|||.||.+|+|.+
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~   69 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET   69 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence            699999999999999999999998 89999999999999999999999888 9999999999999863

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.65  E-value=1.7e-15  Score=132.10  Aligned_cols=104  Identities=21%  Similarity=0.347  Sum_probs=90.4

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEE---CCeEEeeeeecCCCCCccccEEEEEecC----CCcEEEEEEEEc
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDW   83 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~v~d~   83 (524)
                      ...+.|.|+|++|++|+..+..+.+||||++.+   +....+|++++++.||.|||+|.|.+..    ....|.++|||+
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~   92 (125)
T cd08386          13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence            456789999999999999998999999999998   3456799999999999999999997422    235699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~  114 (524)
                      +..+++++||++.+++.++  ......|+.|++
T Consensus        93 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          93 DRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             CCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            9999999999999999988  556789999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.65  E-value=1.5e-15  Score=132.94  Aligned_cols=104  Identities=17%  Similarity=0.313  Sum_probs=87.9

Q ss_pred             CCceEEEEEEEEeecCcCCCCC-CCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEE-ecC---CCcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~-g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~v~d   82 (524)
                      ...+.|.|+|++|+||++.+.. |.+||||++.+.   .+..+|+++++++||.|||+|.|. +..   ....|.++|||
T Consensus        13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d   92 (128)
T cd08388          13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLS   92 (128)
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence            4568999999999999998876 899999999984   345689999999999999999994 432   23469999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--C--CcccEEEEecC
Q 009822           83 WDIIWKSTVLGSVIVTVESE--G--QTGAVWYTLDS  114 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~--~--~~~~~w~~L~~  114 (524)
                      +|.++++++||++.++|+++  .  .....|.+|++
T Consensus        93 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          93 FDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             cCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            99999999999999999988  2  44668888864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.65  E-value=2.9e-15  Score=129.64  Aligned_cols=101  Identities=21%  Similarity=0.307  Sum_probs=91.1

Q ss_pred             eEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009822           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~i   92 (524)
                      |.|.|+|++|++|+..+..|.+||||++.+++ ...+|++++++.||.|||+|.|.+......|.|+|||++..+++++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            68999999999999999899999999999976 45789999999999999999999877778899999999999999999


Q ss_pred             EEEEEEcccC-CCcccEEEEecC
Q 009822           93 GSVIVTVESE-GQTGAVWYTLDS  114 (524)
Q Consensus        93 G~~~i~l~~~-~~~~~~w~~L~~  114 (524)
                      |++.+++.++ ......||.|..
T Consensus        81 G~~~~~l~~l~~~~~~~~~~~~~  103 (120)
T cd04045          81 GSVEINVSDLIKKNEDGKYVEYD  103 (120)
T ss_pred             eEEEEeHHHhhCCCCCceEEecC
Confidence            9999999988 556688998865

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.65  E-value=1.8e-15  Score=131.70  Aligned_cols=113  Identities=20%  Similarity=0.389  Sum_probs=93.1

Q ss_pred             eEEEEEEEEeecCcCCC-CCCCCCcEEEEEECC--eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 009822           14 YLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d-~~g~~dpyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~   90 (524)
                      |.|.|+|++|++|+..+ ..+.+||||++.++.  ...+|+++.++.+|.|||.|.|.+......|.|+|||++..++++
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~   81 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK   81 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence            78999999999999765 356799999999987  678999999999999999999998866788999999999988999


Q ss_pred             eeEEEEEEcccC--CCccc-EEEEecC---CCCeeEEEEEEE
Q 009822           91 VLGSVIVTVESE--GQTGA-VWYTLDS---PSGQVCLHIKTI  126 (524)
Q Consensus        91 ~iG~~~i~l~~~--~~~~~-~w~~L~~---~~G~i~~~l~~~  126 (524)
                      +||.+.+++.++  ..... .|..|..   ..|+|++.++|.
T Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~  123 (124)
T cd04044          82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFF  123 (124)
T ss_pred             eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeC
Confidence            999999999988  22222 3444442   347777777664

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.65  E-value=2.4e-15  Score=131.12  Aligned_cols=105  Identities=26%  Similarity=0.432  Sum_probs=93.4

Q ss_pred             eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecC-CCCCccccEEEEEecCC----CcEEEEEEEEcCCCCC
Q 009822           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIWK   88 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~v~~~----~~~L~v~v~d~d~~~~   88 (524)
                      |.|.|+|++|++|+..+..+.+||||++.++....+|++..+ +.||.||++|.|.+..+    ...|.|+|||.+..++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            679999999999999998899999999999988888998875 89999999999999765    4679999999999989


Q ss_pred             CceeEEEEEEcccC--CCcccEEEEecCCCCe
Q 009822           89 STVLGSVIVTVESE--GQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        89 d~~iG~~~i~l~~~--~~~~~~w~~L~~~~G~  118 (524)
                      +++||.+.+++.++  ....+.|+.|.+..-.
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~~  112 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAELVPAKYN  112 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEeeccceE
Confidence            99999999999988  5567899999875433

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.65  E-value=1.2e-15  Score=131.80  Aligned_cols=100  Identities=30%  Similarity=0.467  Sum_probs=85.4

Q ss_pred             CceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecC--CCcEEEEEEEEcC
Q 009822           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD   84 (524)
Q Consensus        12 ~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~v~d~d   84 (524)
                      ..+.|.|+|++|+||++++ .|.+||||++++..     .+++|++++++.||.|||+|.|.+..  ....|.|+|||++
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            4578999999999999998 88999999999853     35589999999999999999999854  3456899999999


Q ss_pred             CCCC-CceeEEEEEEcccC--CCcccEEEEe
Q 009822           85 IIWK-STVLGSVIVTVESE--GQTGAVWYTL  112 (524)
Q Consensus        85 ~~~~-d~~iG~~~i~l~~~--~~~~~~w~~L  112 (524)
                      ..+. +++||.+.+++.++  +.....||.|
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            8764 78999999999998  4446799986

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.65  E-value=1e-15  Score=133.55  Aligned_cols=110  Identities=23%  Similarity=0.407  Sum_probs=95.2

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEECC-eEEeeeeec-CCCCCccccEEEEEecCC-----CcEEEEEEEEcCCCC
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVP-GSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW   87 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~~T~~~~-~t~nP~W~e~f~f~v~~~-----~~~L~v~v~d~d~~~   87 (524)
                      +|.|+|++|++|+..+..+.+||||++++++ ...+|++.. ++.||.|||.|.|.+...     ...|.|+|||++..+
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            4899999999999999889999999999987 778898875 589999999999998765     577999999999888


Q ss_pred             CCceeEEEEEEcccC--CC-----cccEEEEecCCCCeeEEEEE
Q 009822           88 KSTVLGSVIVTVESE--GQ-----TGAVWYTLDSPSGQVCLHIK  124 (524)
Q Consensus        88 ~d~~iG~~~i~l~~~--~~-----~~~~w~~L~~~~G~i~~~l~  124 (524)
                      ++++||.+.+++.++  ..     ....||.|..+.|+..+.|.
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~  124 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLN  124 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEe
Confidence            999999999999987  22     23689999887777777664

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.64  E-value=2e-15  Score=131.32  Aligned_cols=102  Identities=20%  Similarity=0.372  Sum_probs=88.7

Q ss_pred             CCceEEEEEEEEeecCcCCC-CCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d-~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~   81 (524)
                      ...+.|.|+|++|+||+..+ ..+.+||||++++..     ...+|++++++.+|.|||+|.|.+...   ...|.|+||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            45688999999999999998 788999999998731     356899999999999999999998642   457999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEe
Q 009822           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L  112 (524)
                      |++..+++++||++.++|+++  +.....||+|
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            999999999999999999988  5556889987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.64  E-value=6.1e-16  Score=136.54  Aligned_cols=108  Identities=18%  Similarity=0.306  Sum_probs=93.2

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d   82 (524)
                      ...+.|.|+|++|++|++.+..|.+||||++.+..     ...+|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d   89 (133)
T cd08384          10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD   89 (133)
T ss_pred             CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence            45689999999999999999999999999999842     356899999999999999999997642   4579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~  118 (524)
                      ++..+++++||++.++++..+....+|+.+....|+
T Consensus        90 ~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~~  125 (133)
T cd08384          90 KDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDK  125 (133)
T ss_pred             CCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCCC
Confidence            999889999999999999877777889988654443

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.64  E-value=2.3e-15  Score=131.67  Aligned_cols=103  Identities=19%  Similarity=0.319  Sum_probs=89.6

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d   82 (524)
                      ...+.|.|+|++|+||+..+..+.+||||++.+.     ....+|++++++.||.|||+|.|.+...   ...|.+.|||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~   92 (127)
T cd04030          13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN   92 (127)
T ss_pred             CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence            4568899999999999999988999999999984     3567899999999999999999998532   3679999999


Q ss_pred             cCCC--CCCceeEEEEEEcccC--CCcccEEEEec
Q 009822           83 WDII--WKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (524)
Q Consensus        83 ~d~~--~~d~~iG~~~i~l~~~--~~~~~~w~~L~  113 (524)
                      ++..  +++++||++.++|.++  +.....||+|.
T Consensus        93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             CCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            9875  6899999999999998  45677899884

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.63  E-value=3.4e-15  Score=130.02  Aligned_cols=103  Identities=19%  Similarity=0.348  Sum_probs=88.6

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEE-ecC---CCcEEEEEEEEc
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYDW   83 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~v~d~   83 (524)
                      .....|.|+|++|+||++.+..|.+||||++.+.   ..+.+|++.++ .||.|||+|.|. +..   ....|.|+|||+
T Consensus        13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~   91 (124)
T cd08389          13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV   91 (124)
T ss_pred             CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence            4567899999999999999988999999998763   34568888887 999999999998 543   356699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~  114 (524)
                      +.++++++||++.|+|+.+  ......|++|++
T Consensus        92 ~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          92 ERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             CCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            9999999999999999988  556789999974

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.63  E-value=2.8e-15  Score=133.59  Aligned_cols=88  Identities=25%  Similarity=0.468  Sum_probs=84.1

Q ss_pred             eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009822           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG   93 (524)
                      |.|.|+|++|++|+..+. +.+||||++.++++..+|++++++.||.|||+|.|.+.++...|.|+|||++.+++|++||
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            789999999999999887 8999999999999999999999999999999999999888888999999999999999999


Q ss_pred             EEEEEcccC
Q 009822           94 SVIVTVESE  102 (524)
Q Consensus        94 ~~~i~l~~~  102 (524)
                      .+.+++.++
T Consensus        81 ~a~i~l~~l   89 (145)
T cd04038          81 EAEIDLEPL   89 (145)
T ss_pred             EEEEEHHHh
Confidence            999999987

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.62  E-value=4.9e-15  Score=128.86  Aligned_cols=104  Identities=20%  Similarity=0.324  Sum_probs=89.6

Q ss_pred             CCceEEEEEEEEeecCcCCC-CCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEEc
Q 009822           11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d-~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d~   83 (524)
                      ...+.|.|+|++|++|+..+ ..+.+||||++++.   ....+|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   90 (123)
T cd08390          11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence            44678999999999999998 68899999999973   3456899999999999999999998642   35799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~  114 (524)
                      +..+++++||++.++|+++  ......|++|++
T Consensus        91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             CcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            9988899999999999988  455679999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.62  E-value=4.3e-15  Score=126.81  Aligned_cols=98  Identities=23%  Similarity=0.494  Sum_probs=86.1

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCC-----CcEEEEEEEEcCCCC
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW   87 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-----~~~L~v~v~d~d~~~   87 (524)
                      .+.|+|+|++|++|+    .|.+||||++++++++.+|++++++.||.|||+|.|.+..+     ...|.|+|||++.++
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~   78 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR   78 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence            488999999999998    57899999999999999999999999999999999997542     356999999999998


Q ss_pred             CCceeEEEEEEcccC--C---CcccEEEEecC
Q 009822           88 KSTVLGSVIVTVESE--G---QTGAVWYTLDS  114 (524)
Q Consensus        88 ~d~~iG~~~i~l~~~--~---~~~~~w~~L~~  114 (524)
                      ++++||.+.++|+.+  .   .....|++|..
T Consensus        79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            999999999999987  2   33578999853

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.62  E-value=3.9e-15  Score=133.49  Aligned_cols=101  Identities=26%  Similarity=0.571  Sum_probs=88.5

Q ss_pred             CCCCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-----------------------------EEeeeeecCCCC
Q 009822            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----------------------------KRFSSMVPGSRY   58 (524)
Q Consensus         8 ~~~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-----------------------------~~~T~~~~~t~n   58 (524)
                      ...+..+.|.|+|++|++|.++|..|.+||||++.+...                             ..+|+++.+++|
T Consensus        22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln  101 (153)
T cd08676          22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN  101 (153)
T ss_pred             hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence            456789999999999999999999999999999998531                             257899999999


Q ss_pred             CccccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC-CCcccEEEEe
Q 009822           59 PMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTL  112 (524)
Q Consensus        59 P~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~-~~~~~~w~~L  112 (524)
                      |.|||+|.|.+... ...|.|+|||++    +++||++.++++++ ....+.||+|
T Consensus       102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L  153 (153)
T cd08676         102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL  153 (153)
T ss_pred             CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence            99999999998764 567999999997    78999999999988 4567899987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.62  E-value=9.6e-16  Score=135.22  Aligned_cols=107  Identities=21%  Similarity=0.273  Sum_probs=90.7

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d   82 (524)
                      +....|.|+|++|+||++.+..|.+||||++++..     .+.+|+++++++||.|||+|.|.+..   ....|.|+|||
T Consensus        12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~   91 (136)
T cd08406          12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE   91 (136)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence            45678999999999999999899999999999832     24579999999999999999999864   34669999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEecCCCC
Q 009822           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G  117 (524)
                      +|..+++++||++.+.....+....+|..+....+
T Consensus        92 ~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~  126 (136)
T cd08406          92 STEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLR  126 (136)
T ss_pred             CCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCC
Confidence            99999999999999988777777778887755443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.62  E-value=3.9e-15  Score=135.52  Aligned_cols=105  Identities=21%  Similarity=0.266  Sum_probs=90.3

Q ss_pred             CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecC----CCcEEEEEE
Q 009822           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTI   80 (524)
Q Consensus        10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~v   80 (524)
                      ....+.|.|+|++|+||+..+..|.+||||++.+.     ...++|++++++.||.|||+|.|.+..    ....|.|+|
T Consensus        23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V  102 (162)
T cd04020          23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV  102 (162)
T ss_pred             CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence            34689999999999999999989999999999872     356789999999999999999998532    235699999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822           81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~  114 (524)
                      ||++.++++++||++.+++.++  ....+.|+.|.+
T Consensus       103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020         103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             EeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            9999999999999999999987  445688988864

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.62  E-value=5.8e-15  Score=132.21  Aligned_cols=99  Identities=22%  Similarity=0.369  Sum_probs=85.7

Q ss_pred             EEEEEEEeecCcCCCCCC--------------CCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEec--CCCcEEEEE
Q 009822           16 IKLELLAAKNLIGANLNG--------------TSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVT   79 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~~g--------------~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~--~~~~~L~v~   79 (524)
                      |.|+|++|++|+.+|..+              .+||||++.+++.+.+|+++++++||.|||+|.|.+.  .....|.|+
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~   81 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ   81 (151)
T ss_pred             eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence            789999999999988554              6899999999999999999999999999999999864  345689999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccC-CCc--------ccEEEEecC
Q 009822           80 IYDWDIIWKSTVLGSVIVTVESE-GQT--------GAVWYTLDS  114 (524)
Q Consensus        80 v~d~d~~~~d~~iG~~~i~l~~~-~~~--------~~~w~~L~~  114 (524)
                      |||+|..++|++||.+.+++.++ ...        ...|+.|.+
T Consensus        82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg  125 (151)
T cd04018          82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG  125 (151)
T ss_pred             EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence            99999999999999999999987 222        247777754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.61  E-value=6.8e-15  Score=127.91  Aligned_cols=93  Identities=19%  Similarity=0.372  Sum_probs=82.6

Q ss_pred             CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEec--CCCcEEEEEEEEcCCCC
Q 009822           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDIIW   87 (524)
Q Consensus        10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~--~~~~~L~v~v~d~d~~~   87 (524)
                      ....+.|.|+|++|++|+. +..|.+||||++++++...+|+++++++||.|||+|.|...  .....|.|+|||++..+
T Consensus        24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s  102 (127)
T cd04032          24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW  102 (127)
T ss_pred             cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence            4557899999999999974 67789999999999988899999999999999999999743  24678999999999999


Q ss_pred             CCceeEEEEEEcccCC
Q 009822           88 KSTVLGSVIVTVESEG  103 (524)
Q Consensus        88 ~d~~iG~~~i~l~~~~  103 (524)
                      +|++||.+.++|....
T Consensus       103 ~dd~IG~~~i~l~~~~  118 (127)
T cd04032         103 DDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCeeEEEEEEecCCc
Confidence            9999999999998653

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.61  E-value=1.8e-14  Score=126.15  Aligned_cols=94  Identities=21%  Similarity=0.359  Sum_probs=83.8

Q ss_pred             EEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcCCCCCCceeEEEE
Q 009822           20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTVLGSVI   96 (524)
Q Consensus        20 vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d~~~~d~~iG~~~   96 (524)
                      |++|++|+.  ..|.+||||++.++....+|++++++.||.|||+|.|.+..   ....|.|+|||++..+++++||.+.
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~   79 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT   79 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence            689999988  67899999999999888999999999999999999999864   3577999999999999999999999


Q ss_pred             EEcccC--CCcccEEEEecCC
Q 009822           97 VTVESE--GQTGAVWYTLDSP  115 (524)
Q Consensus        97 i~l~~~--~~~~~~w~~L~~~  115 (524)
                      ++++++  +.....|++|...
T Consensus        80 ~~l~~l~~~~~~~~~~~L~~~  100 (127)
T cd08373          80 VSLQDLVSEGLLEVTEPLLDS  100 (127)
T ss_pred             EEhhHcccCCceEEEEeCcCC
Confidence            999988  4556789999643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.60  E-value=3.5e-15  Score=132.21  Aligned_cols=108  Identities=19%  Similarity=0.391  Sum_probs=92.4

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d   82 (524)
                      ...+.|.|+|++|++|+..+..|.+||||++.+..     ...+|+++++++||.|+|+|.|.+..   ....|.|+|||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d   91 (136)
T cd08404          12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence            44678999999999999999999999999999742     24578999999999999999999853   34569999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~  118 (524)
                      ++.++++++||++.+++...+....+|++|....|+
T Consensus        92 ~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~  127 (136)
T cd08404          92 SDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRR  127 (136)
T ss_pred             CCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCC
Confidence            999999999999999999876667889998765565

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.60  E-value=2.8e-15  Score=132.25  Aligned_cols=105  Identities=18%  Similarity=0.220  Sum_probs=87.8

Q ss_pred             CCCceEEEEEEEEeecCcCCCC--CCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecC---CCcEEEEE
Q 009822           10 TNSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVT   79 (524)
Q Consensus        10 ~~~~~~L~V~vi~A~~L~~~d~--~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~   79 (524)
                      .+..+.|.|.|++|+||++++.  .+.+||||++++..     .+.+|++.++++||+|||.|.|.+..   ....|.|+
T Consensus        11 ~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~   90 (138)
T cd08407          11 LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE   90 (138)
T ss_pred             eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence            3567889999999999999983  35599999999753     24579999999999999999999864   24569999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCCcccEEEEecC
Q 009822           80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (524)
Q Consensus        80 v~d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~  114 (524)
                      |||+|.++++++||++.+.+...+....+|..+..
T Consensus        91 V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~  125 (138)
T cd08407          91 VLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLD  125 (138)
T ss_pred             EEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHh
Confidence            99999999999999999999876666677776643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.59  E-value=8.6e-15  Score=129.64  Aligned_cols=99  Identities=20%  Similarity=0.411  Sum_probs=87.7

Q ss_pred             EEEEEEEeecCcCCCCCCCCCcEEEEEEC----CeEEeeeeecCCCCCccccEEEEEecCC----------------CcE
Q 009822           16 IKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQ   75 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~----~~~~~T~~~~~t~nP~W~e~f~f~v~~~----------------~~~   75 (524)
                      |.|+|++|++|+.+ ..|.+||||+++++    ...++|+++.++.+|.|+|+|.|.+...                ...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999988 78999999999997    6778999999999999999999997653                456


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEecCC
Q 009822           76 IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (524)
Q Consensus        76 L~v~v~d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~  115 (524)
                      |.|+|||++..++++|||++.+++.++  ......||+|.++
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~  121 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence            999999999988999999999999987  4456899999874

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.59  E-value=5.5e-16  Score=153.31  Aligned_cols=106  Identities=25%  Similarity=0.494  Sum_probs=93.5

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecC--CCcEEEEEEEEcCC
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDI   85 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~v~d~d~   85 (524)
                      ...|+|+|.+|+||.++|.+|.+||||.+++-     ..+++|++++.++||+|||+|.|.+..  .+++|.|+|||||+
T Consensus       179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr  258 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR  258 (683)
T ss_pred             CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence            45789999999999999999999999999972     346789999999999999999999854  46779999999999


Q ss_pred             CCCCceeEEEEEEcccC-CCcccEEEEecC-CCCe
Q 009822           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ  118 (524)
Q Consensus        86 ~~~d~~iG~~~i~l~~~-~~~~~~w~~L~~-~~G~  118 (524)
                      .+++||+|...+.++++ ..+.+.||.|.+ ..|+
T Consensus       259 TsRNDFMGslSFgisEl~K~p~~GWyKlLsqeEGE  293 (683)
T KOG0696|consen  259 TSRNDFMGSLSFGISELQKAPVDGWYKLLSQEEGE  293 (683)
T ss_pred             cccccccceecccHHHHhhcchhhHHHHhhhhcCc
Confidence            99999999999999999 667889999875 3454

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.59  E-value=2.2e-15  Score=133.55  Aligned_cols=107  Identities=28%  Similarity=0.437  Sum_probs=91.1

Q ss_pred             CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC--C---eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEE
Q 009822           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (524)
Q Consensus        10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~   81 (524)
                      ++..+.|.|+|++|++|+.++..|.+||||++.+.  .   ...+|+++++++||.|||+|.|.+...   ...|.|+||
T Consensus        11 ~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~   90 (136)
T cd08402          11 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVL   90 (136)
T ss_pred             cCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            45678999999999999999999999999999984  2   345799999999999999999997532   246999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEecCCC
Q 009822           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPS  116 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~  116 (524)
                      |++.++++++||.+.+++...+....+|+++....
T Consensus        91 d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~  125 (136)
T cd08402          91 DYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASP  125 (136)
T ss_pred             eCCCCCCCceeEEEEECCccCChHHHHHHHHHhCC
Confidence            99999999999999999988766677888875533

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.59  E-value=1.5e-14  Score=124.30  Aligned_cols=104  Identities=26%  Similarity=0.465  Sum_probs=90.7

Q ss_pred             EEEEEEEeecCcCCCCCCCCCcEEEEEECC-eEEeeeeecCCCCCccccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 009822           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG   93 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~d~~~~d~~iG   93 (524)
                      |+|+|++|++|+..+..+.+||||++.+.+ ...+|+++.++.+|.|||+|.|.+.. ....|.|+|||++..+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            579999999999999888999999999965 44689999999999999999999875 4577999999999988999999


Q ss_pred             EEEEEcccC--CCcccEEEEecCCCCee
Q 009822           94 SVIVTVESE--GQTGAVWYTLDSPSGQV  119 (524)
Q Consensus        94 ~~~i~l~~~--~~~~~~w~~L~~~~G~i  119 (524)
                      ++.+++.++  +.....|++|.+++|.-
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~g~~~  108 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPLDGQGGGK  108 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEECcCCCCcc
Confidence            999999987  45678899998755543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.58  E-value=3.4e-14  Score=122.33  Aligned_cols=105  Identities=29%  Similarity=0.437  Sum_probs=85.0

Q ss_pred             EEEEEEEeecCcCCCCCCCCCcEEEEEECCeE-EeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcCCCCCCce
Q 009822           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTV   91 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d~~~~d~~   91 (524)
                      |.|+|++|++|+..   |.+||||.+++++.. .+|+++++ .+|.|||+|.|.+..   ....|.+.+||.+..+.+.+
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~   77 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV   77 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence            78999999999876   789999999998754 68999988 999999999999875   23558888999887766777


Q ss_pred             eEEEEEEcccCCCcccEEEEecCC------CCeeEEEEE
Q 009822           92 LGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK  124 (524)
Q Consensus        92 iG~~~i~l~~~~~~~~~w~~L~~~------~G~i~~~l~  124 (524)
                      +|.+.+.....+...+.|++|.+.      .|+|++++.
T Consensus        78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~  116 (117)
T cd08383          78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRAR  116 (117)
T ss_pred             EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEE
Confidence            887776665557778899999763      466666654

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.58  E-value=3.2e-15  Score=113.05  Aligned_cols=59  Identities=36%  Similarity=0.693  Sum_probs=56.5

Q ss_pred             ccCcccceEEeeeeeeeeccceeeEEEeecceEEEEeccCccee-EEEEecccccccccc
Q 009822          170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRS  228 (524)
Q Consensus       170 ~lp~~e~l~~~~~c~l~~~~~~~Gr~yit~~~~cF~s~~~g~~~-~~~i~~~~i~~i~k~  228 (524)
                      +||++|.|+.+|.|+|++.++++||||||++++||+|+.+|+.+ +++||+.+|.+|+|.
T Consensus         1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~   60 (61)
T smart00568        1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS   60 (61)
T ss_pred             CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence            37899999999999999999999999999999999999999999 999999999999985

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.57  E-value=2e-14  Score=126.51  Aligned_cols=105  Identities=27%  Similarity=0.493  Sum_probs=91.7

Q ss_pred             eEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCC--CcEEEEEEEEcCCC
Q 009822           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDII   86 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~--~~~L~v~v~d~d~~   86 (524)
                      +.|.|+|++|++|+..+..+.+||||.+.+..     ...+|++++++.+|.|||+|.|.+...  ...|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            78999999999999998888999999999852     567899999999999999999997643  46799999999988


Q ss_pred             CCCceeEEEEEEcccC-CCcccEEEEecC-CCCe
Q 009822           87 WKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ  118 (524)
Q Consensus        87 ~~d~~iG~~~i~l~~~-~~~~~~w~~L~~-~~G~  118 (524)
                      +++++||++.++++++ ......||+|.. +.|+
T Consensus        93 ~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~  126 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGE  126 (131)
T ss_pred             CCcceeEEEEEeHHHhCcCccCceEECcCccccc
Confidence            8999999999999988 446788999965 4565

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.56  E-value=9.2e-15  Score=129.20  Aligned_cols=108  Identities=23%  Similarity=0.414  Sum_probs=90.7

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d   82 (524)
                      +..+.|+|+|++|++|++++..|.+||||++.+..     ...+|+++++++||.|+|+|.|.+...   ...|.|+|||
T Consensus        11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d   90 (134)
T cd08403          11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence            45688999999999999999999999999999732     245788889999999999999997531   2469999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~  118 (524)
                      ++..+++++||++.+++...+.....|+++....|+
T Consensus        91 ~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~  126 (134)
T cd08403          91 YDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRK  126 (134)
T ss_pred             CCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCC
Confidence            999999999999999988666667788887654444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.56  E-value=8.5e-15  Score=129.77  Aligned_cols=108  Identities=26%  Similarity=0.415  Sum_probs=90.8

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC--C---eEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d   82 (524)
                      +..+.|.|+|++|+||+..+..|.+||||++.+.  +   ...+|++++++.||.|||+|.|.+..   ....|.|+|||
T Consensus        12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d   91 (136)
T cd08405          12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence            4568899999999999999989999999999873  2   34579999999999999999999752   24579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~  118 (524)
                      ++.++++++||++.+++...+....+|+++...+|+
T Consensus        92 ~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~  127 (136)
T cd08405          92 KDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQ  127 (136)
T ss_pred             CCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCC
Confidence            999999999999999999876666778877554443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.56  E-value=2.6e-14  Score=126.09  Aligned_cols=93  Identities=22%  Similarity=0.414  Sum_probs=81.9

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-------CeEEeeeeecCCCCCccccEEEEEecC-----CCcEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIV   78 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-------~~~~~T~~~~~t~nP~W~e~f~f~v~~-----~~~~L~v   78 (524)
                      ...+.|+|+|++|++|+..+..|.+||||++.+.       ....+|+++++++||.|||+|.|.+..     ....|.|
T Consensus        13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~   92 (133)
T cd04009          13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF   92 (133)
T ss_pred             CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence            3457899999999999999988999999999984       345789999999999999999999864     2457999


Q ss_pred             EEEEcCCCCCCceeEEEEEEcccCC
Q 009822           79 TIYDWDIIWKSTVLGSVIVTVESEG  103 (524)
Q Consensus        79 ~v~d~d~~~~d~~iG~~~i~l~~~~  103 (524)
                      +|||++..+++++||++.++|+++.
T Consensus        93 ~V~d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          93 TVKDYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             EEEecCCCCCCcEeEEEEEeHHHCC
Confidence            9999999998999999999999873

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.55  E-value=1.2e-14  Score=128.61  Aligned_cols=108  Identities=22%  Similarity=0.448  Sum_probs=89.8

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-C----eEEeeeeecCCCCCccccEEEEEecC--C-CcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-S----EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-~----~~~~T~~~~~t~nP~W~e~f~f~v~~--~-~~~L~v~v~d   82 (524)
                      +..+.|.|+|++|++|+..+..|.+||||++.+. +    ...+|++++++.||.|||+|.|.+..  . ...|.|+|||
T Consensus        11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d   90 (135)
T cd08410          11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG   90 (135)
T ss_pred             CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence            5568999999999999999999999999999973 2    34589999999999999999999843  2 3469999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCC-cccEEEEecCCCCe
Q 009822           83 WDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSGQ  118 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~~~-~~~~w~~L~~~~G~  118 (524)
                      ++..+++++||++.|.....+. ...+|+.|....|.
T Consensus        91 ~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~  127 (135)
T cd08410          91 HNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRT  127 (135)
T ss_pred             CCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCC
Confidence            9999999999999887766543 46789888765554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.55  E-value=1.1e-14  Score=129.15  Aligned_cols=109  Identities=20%  Similarity=0.355  Sum_probs=91.4

Q ss_pred             CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC------eEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEE
Q 009822           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (524)
Q Consensus        10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v   80 (524)
                      +...+.|.|+|++|+||++++..|.+||||++.+..      .+.+|++.+++.||.|||+|.|.+..   ....|.|+|
T Consensus        11 ~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V   90 (138)
T cd08408          11 NALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSV   90 (138)
T ss_pred             cCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEE
Confidence            356789999999999999999999999999999832      24589999999999999999999864   345799999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCC-cccEEEEecCCCCe
Q 009822           81 YDWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSGQ  118 (524)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~~~~-~~~~w~~L~~~~G~  118 (524)
                      ||++.++++++||++.+++...+. ...+|+.+....++
T Consensus        91 ~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~  129 (138)
T cd08408          91 YNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQ  129 (138)
T ss_pred             EECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCC
Confidence            999999999999999999887753 45788887654443

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.54  E-value=2e-13  Score=122.36  Aligned_cols=111  Identities=14%  Similarity=0.189  Sum_probs=88.9

Q ss_pred             EEEEEEEeec--CcCCCCCCCCCcEEEEEE-----CCeEEeeeeecCCCCCccccEEEEEecCC---------CcEEEEE
Q 009822           16 IKLELLAAKN--LIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---------PVQIIVT   79 (524)
Q Consensus        16 L~V~vi~A~~--L~~~d~~g~~dpyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v~~~---------~~~L~v~   79 (524)
                      ..++|+.|++  |+..+..+.+||||++++     ..++.+|+++++++||+|||+|.|.+...         ...|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            3456666666  777777889999999986     24577999999999999999999998543         2459999


Q ss_pred             EEEcCCC-CCCceeEEEEEEcccC--CCcccEEEEecC----CCCeeEEEEEEE
Q 009822           80 IYDWDII-WKSTVLGSVIVTVESE--GQTGAVWYTLDS----PSGQVCLHIKTI  126 (524)
Q Consensus        80 v~d~d~~-~~d~~iG~~~i~l~~~--~~~~~~w~~L~~----~~G~i~~~l~~~  126 (524)
                      |||++.+ ++|++||.+.++|+.+  ......|++|..    -+|++.+.+++.
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r  137 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLR  137 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEec
Confidence            9999986 4799999999999998  445667999853    358887777754

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.53  E-value=1.6e-14  Score=127.46  Aligned_cols=108  Identities=26%  Similarity=0.440  Sum_probs=93.1

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-----EEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-----~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d   82 (524)
                      +..+.|.|+|++|++|+..+..+.+||||++.+...     ..+|+++.++.+|.|||+|.|.+...   ...|.|+|||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d   90 (134)
T cd00276          11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence            345789999999999999998899999999998532     45899999999999999999998653   4679999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~  118 (524)
                      .+..+++++||.+.+++++.+....+|++|....|+
T Consensus        91 ~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~  126 (134)
T cd00276          91 KDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRK  126 (134)
T ss_pred             cCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCC
Confidence            998888999999999999976677899999765454

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.53  E-value=7.5e-14  Score=121.56  Aligned_cols=89  Identities=24%  Similarity=0.492  Sum_probs=79.5

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEECCeE--EeeeeecCCCCCccccEEEEEecC-CCcEEEEEEEEcCCCCCCce
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV   91 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~--~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~d~~~~d~~   91 (524)
                      +|+|.|++|++|+..+..|.+||||++.+++..  .+|+++++++||.|||+|.|.+.. ....|.|+|||++..+++++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            478999999999999999999999999998765  468888999999999999999754 35679999999999999999


Q ss_pred             eEEEEEEcccCC
Q 009822           92 LGSVIVTVESEG  103 (524)
Q Consensus        92 iG~~~i~l~~~~  103 (524)
                      ||++.+++++..
T Consensus        81 iG~~~i~l~~~~   92 (124)
T cd04037          81 IGETVIDLEDRF   92 (124)
T ss_pred             eEEEEEeecccc
Confidence            999999999773

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.52  E-value=2e-13  Score=120.36  Aligned_cols=99  Identities=23%  Similarity=0.272  Sum_probs=82.5

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEECC-------------eEEeeeeecCCCCCcc-ccEEEEEecCCCcEEEEEE
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-------------EKRFSSMVPGSRYPMW-GEEFNFSVDELPVQIIVTI   80 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-------------~~~~T~~~~~t~nP~W-~e~f~f~v~~~~~~L~v~v   80 (524)
                      +..|++++|++|+ ++..|.+||||++.+..             +..+|+++++++||.| ||+|.|.+.. ...|.|+|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence            4689999999998 78889999999999842             3578999999999999 9999999853 56899999


Q ss_pred             EEcCCCCC---CceeEEEEEEcccCC-----CcccEEEEecCC
Q 009822           81 YDWDIIWK---STVLGSVIVTVESEG-----QTGAVWYTLDSP  115 (524)
Q Consensus        81 ~d~d~~~~---d~~iG~~~i~l~~~~-----~~~~~w~~L~~~  115 (524)
                      ||++..++   +++||++.+++.++-     .....|++|..+
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~  122 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR  122 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence            99875443   789999999999872     235679999754

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.52  E-value=6e-14  Score=122.17  Aligned_cols=106  Identities=21%  Similarity=0.309  Sum_probs=86.9

Q ss_pred             CCCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCC-CCccccEEEEEecC--CCcEEEEEE
Q 009822            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSR-YPMWGEEFNFSVDE--LPVQIIVTI   80 (524)
Q Consensus         9 ~~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~-nP~W~e~f~f~v~~--~~~~L~v~v   80 (524)
                      ..+..+.|+|.|++|+||++....+..||||++.+-     -.+.+|++.++++ +|.|||+|.|++..  ....|.|+|
T Consensus         9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v   88 (135)
T cd08692           9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL   88 (135)
T ss_pred             ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence            457789999999999999998667778999999873     2356799999996 59999999999864  234588999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC-CCcccEEEEecC
Q 009822           81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (524)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~~-~~~~~~w~~L~~  114 (524)
                      ||++..+++++||++.+..+.. +...++|.+...
T Consensus        89 ~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~  123 (135)
T cd08692          89 YSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIA  123 (135)
T ss_pred             EeCCCCcCCceEEEEEECCccCCchhhhhHHHHHh
Confidence            9999999999999999999875 445677877643

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.52  E-value=7.2e-14  Score=121.01  Aligned_cols=95  Identities=16%  Similarity=0.254  Sum_probs=81.8

Q ss_pred             EEEeecCcCCCCCCCCCcEEEEEECCe-------EEeeeeecCCCCCccccEEEEEec-CCCcEEEEEEEEcCC----CC
Q 009822           20 LLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI----IW   87 (524)
Q Consensus        20 vi~A~~L~~~d~~g~~dpyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~v~-~~~~~L~v~v~d~d~----~~   87 (524)
                      .++|++|+..+..|.+||||++++...       ..+|+++++++||.|+|+|.|.+. +....|.|+|||++.    .+
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~   85 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS   85 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence            489999999999999999999998654       368999999999999999999854 345679999999997    78


Q ss_pred             CCceeEEEEEEcccC--CCcccEEEEecC
Q 009822           88 KSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        88 ~d~~iG~~~i~l~~~--~~~~~~w~~L~~  114 (524)
                      ++++||++.+++.++  ......|++|.+
T Consensus        86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          86 DHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence            999999999999998  455677888843

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=99.51  E-value=1.6e-14  Score=154.84  Aligned_cols=477  Identities=23%  Similarity=0.265  Sum_probs=281.0

Q ss_pred             CCCCCCCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC-CCcEEEEEEEEc
Q 009822            5 KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDW   83 (524)
Q Consensus         5 ~~~~~~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~   83 (524)
                      ++......++...+..+.+-++..-...+.++||..+..............+.+|.|++.+.|+-.. +-....+..+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~e  167 (590)
T KOG1032|consen   88 KGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDE  167 (590)
T ss_pred             CcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeee
Confidence            4455556667776777777777666667788999999887777778888889999999999998543 234455666665


Q ss_pred             CCC-CCCceeEEEEEEccc-CCCcccEEEEecCCCCeeE---EEEEEEeccccccccccCcccccccccccccCCCCccc
Q 009822           84 DII-WKSTVLGSVIVTVES-EGQTGAVWYTLDSPSGQVC---LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVV  158 (524)
Q Consensus        84 d~~-~~d~~iG~~~i~l~~-~~~~~~~w~~L~~~~G~i~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (524)
                      +.. .+..-.|.+...+.- .......|..|..+.+...   +.+........+.+...+++......- .-..+.+.+.
T Consensus       168 I~~ikk~~tag~fpn~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~-~~~~~~~~~~  246 (590)
T KOG1032|consen  168 ITLIKKTKTAGIFPNAIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEV-NDDQQGNVDN  246 (590)
T ss_pred             eeeeehhhhccCCCcceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCc-Cccccccccc
Confidence            532 222223333222221 2445678888888776543   344444444444555555554432211 0111345566


Q ss_pred             cccccccccccccCcccceEEeeeeeeeeccceeeEEEeecceEEEEeccCcceeEEEEeccccccccccccceecCc--
Q 009822          159 HQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPA--  236 (524)
Q Consensus       159 ~~k~~~f~~~F~lp~~e~l~~~~~c~l~~~~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~--  236 (524)
                      .+.+.++...|++|+.|.+..+++|.+.+...++|+++++....+|++.+||..+.+..+++++..++........+.  
T Consensus       247 ~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~  326 (590)
T KOG1032|consen  247 SQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSG  326 (590)
T ss_pred             CCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCcc
Confidence            778899999999999999999999999999999999999999999999999999999999999999998887765554  


Q ss_pred             -EEEEEecCCCCCCCCCCC--CCCCceeEEEeeeechHHHHHHHHHHHHhhccchhhHHhhhhhhccccCCCCCCCCccc
Q 009822          237 -ITIILRMGAGGHGVPPLG--SPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSSIGGSRRQ  313 (524)
Q Consensus       237 -i~i~~~~~~~~~~~~~~~--~~~~~~~~~f~sf~~rd~~~~~l~~~~~~~~~~~~~e~~~~~~s~~~~~s~~~~~s~~~  313 (524)
                       ......-+.++|+..+-+  ...+...+.|..+...   ++++.+......+..+......+..-.++.+.+.     .
T Consensus       327 ~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~---~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~-----~  398 (590)
T KOG1032|consen  327 ILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKY---FRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSC-----K  398 (590)
T ss_pred             ceeEeccCCccCCCcCCCccccccceeeEEeccchhh---hhhhheeccCCccccceeeeeEEEEEEecCCcce-----e
Confidence             222222222344333332  2235555555555332   4444443322221111000000000000000000     0


Q ss_pred             ccccccc-cC-CCCCCCCCccccccceeeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEE
Q 009822          314 AKIVEET-VT-KPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVR  391 (524)
Q Consensus       314 ~~~~~d~-~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R  391 (524)
                      -...... .. .+-..       .+..+.....++.+.. ++-+|+ +..-...-+...+...+.-++|. .+..++..|
T Consensus       399 l~v~~~V~~~~~sw~~-------~~~~~~~~~~k~lv~~-~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~-v~~~~~~v~  468 (590)
T KOG1032|consen  399 LKVSTSVEWTKSSWDV-------PVSEIGSNTLKDLVEI-LEKLLE-NGEELAKNQEKEDELTYEGSPWE-VEKPGGTVR  468 (590)
T ss_pred             ecceeEEEeccCchhh-------ccccccccchhhHHHH-HHHHHh-ccHHHHHhhcccccccccCCCcc-ccCCCceee
Confidence            0000000 00 00000       0011111133333433 334444 33333333334444445556899 766688999


Q ss_pred             EEEEEeeccCCCCCceeeEeEEEEEEecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCC----CCeEEEEEEEEE
Q 009822          392 EVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAE----NSSTIDIKVGAH  467 (524)
Q Consensus       392 ~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~----~~c~l~v~~~V~  467 (524)
                      ...|.---+.++.+....+...|...+......++++.....+++|||++|.++.||. .....    ..+++.++..+.
T Consensus       469 ~~~~~~~~~~~i~~~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~-~~~~~~~~v~~~~~~~~~~~~  547 (590)
T KOG1032|consen  469 QLSYKEVWNKPISPDKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYR-EALDETSKVKTTLVWVSFRIE  547 (590)
T ss_pred             eeccccccccccccccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhh-hhhcccchhhhhhHHHHHHHH
Confidence            9888864556788888888888877766556788899999999999999999999997 22222    233334444444


Q ss_pred             EeeeceeeeeeeccHHHHHHHHHHHHHHHHHHHHhhcC
Q 009822          468 FKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICT  505 (524)
Q Consensus       468 f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~~l~~~~  505 (524)
                      |++    +..++.+..+........+++++...++...
T Consensus       548 ~l~----~~~~~~~~~k~~~r~~~~~l~~~~~~l~~~~  581 (590)
T KOG1032|consen  548 WLK----DIKMEARKIKQILRNDQDLLEVLFSLLEKLS  581 (590)
T ss_pred             HHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            443    4444444555555555555555555555443

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.51  E-value=2.8e-13  Score=118.12  Aligned_cols=98  Identities=15%  Similarity=0.264  Sum_probs=83.2

Q ss_pred             eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-EEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009822           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~i   92 (524)
                      -.|.|+|++|+ |...+..+.+||||++++++. ..+|++++++.+|.|||.|.|.+.. ...|.|+|||++..+++++|
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~i   79 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLL   79 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEE
Confidence            36899999998 555656889999999999877 7899999999999999999999864 67899999999999999999


Q ss_pred             EEEEEEcccCC-----Cc--ccEEEEec
Q 009822           93 GSVIVTVESEG-----QT--GAVWYTLD  113 (524)
Q Consensus        93 G~~~i~l~~~~-----~~--~~~w~~L~  113 (524)
                      |++.++|+++.     ..  ...|++|.
T Consensus        80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~  107 (125)
T cd04021          80 GEASLDLSDILKNHNGKLENVKLTLNLS  107 (125)
T ss_pred             EEEEEEHHHhHhhcCCCccceEEEEEEE
Confidence            99999999871     11  23488885

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.50  E-value=5.3e-13  Score=118.34  Aligned_cols=99  Identities=23%  Similarity=0.285  Sum_probs=84.0

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEE-eeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCC--
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW--   87 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~--   87 (524)
                      +--..|.|.|++|++|++++     +|||.+.+++... +|+++.++.||.|+|.|.|........|.|.||+.+...  
T Consensus         8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~   82 (146)
T cd04013           8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKK   82 (146)
T ss_pred             EEEEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccc
Confidence            34567999999999998865     7999999998885 999999999999999999986555677999998765322  


Q ss_pred             --CCceeEEEEEEcccC--CCcccEEEEecC
Q 009822           88 --KSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        88 --~d~~iG~~~i~l~~~--~~~~~~w~~L~~  114 (524)
                        ++.+||.+.|++..+  +...+.||+|.+
T Consensus        83 ~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~  113 (146)
T cd04013          83 KDKSQLIGTVNIPVTDVSSRQFVEKWYPVST  113 (146)
T ss_pred             ccCCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence              578999999999988  556789999965

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.49  E-value=2.8e-13  Score=114.85  Aligned_cols=81  Identities=15%  Similarity=0.339  Sum_probs=70.6

Q ss_pred             EEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEc-------
Q 009822           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDW-------   83 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~-------   83 (524)
                      |.|+|.+|+||+     +.+||||.+.+..     ...+|+++++++||.|||+|.|.+.. ...|.+.|||+       
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~   74 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL   74 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence            679999999995     5689999998852     35789999999999999999999974 77899999998       


Q ss_pred             CCCCCCceeEEEEEEcccC
Q 009822           84 DIIWKSTVLGSVIVTVESE  102 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~  102 (524)
                      |..++|+++|.+.+.|+.-
T Consensus        75 d~~~~d~~~G~g~i~Ld~~   93 (118)
T cd08686          75 DGEGTDAIMGKGQIQLDPQ   93 (118)
T ss_pred             cccCcccEEEEEEEEECHH
Confidence            5667899999999999864

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.49  E-value=3e-13  Score=115.44  Aligned_cols=96  Identities=20%  Similarity=0.330  Sum_probs=81.5

Q ss_pred             CCCCCCcEEEEEECCe-EEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC---CCc
Q 009822           31 LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQT  105 (524)
Q Consensus        31 ~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~---~~~  105 (524)
                      .+|.+||||.+++++. ..+|++++++.||.|||.|.|.+.+. ...|.|+|||++.+ ++++||.+.++|+++   ...
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~   87 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV   87 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence            4788999999999875 46899999999999999999998764 46699999999998 899999999999987   234


Q ss_pred             ccEEEEecC-CCCeeEEEEEEEe
Q 009822          106 GAVWYTLDS-PSGQVCLHIKTIK  127 (524)
Q Consensus       106 ~~~w~~L~~-~~G~i~~~l~~~~  127 (524)
                      ...|++|.+ +.|+|++++.|.+
T Consensus        88 ~~~w~~L~~~~~G~i~~~~~~~p  110 (111)
T cd04052          88 GQQWFPLSGNGQGRIRISALWKP  110 (111)
T ss_pred             cceeEECCCCCCCEEEEEEEEec
Confidence            579999974 5699888887764

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.49  E-value=4.4e-13  Score=116.60  Aligned_cols=100  Identities=19%  Similarity=0.287  Sum_probs=83.6

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEE-ecC---CCcEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIY   81 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~v~   81 (524)
                      +..+.|.|+|++|++|++.+..+.+||||++.+.     ....+|++++++.||.||++|.|. +..   ....|.|+||
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~   91 (123)
T cd04035          12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL   91 (123)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence            4568899999999999999988999999999973     235789999999999999999996 332   2467999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEE
Q 009822           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYT  111 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~  111 (524)
                      |++.. .+++||.+.++++++......|+.
T Consensus        92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~  120 (123)
T cd04035          92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFN  120 (123)
T ss_pred             EcCCc-CCeeEEEEEEEcccCCCCcceEee
Confidence            99988 889999999999998555455443

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.48  E-value=9e-14  Score=123.22  Aligned_cols=103  Identities=19%  Similarity=0.317  Sum_probs=85.8

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecC--C-CcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~--~-~~~L~v~v~d   82 (524)
                      +..+.|.|+|++|+||++.+ .+.+||||++.+..     .+.+|++++++.||.|||+|.|.+..  . ...|.|+|||
T Consensus        12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~   90 (137)
T cd08409          12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ   90 (137)
T ss_pred             CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence            45688999999999999998 88899999999742     34589999999999999999999853  2 3569999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~  114 (524)
                      ++..+++++||++.+.....  +...++|..+..
T Consensus        91 ~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~  124 (137)
T cd08409          91 SGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS  124 (137)
T ss_pred             CCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence            99999999999999986543  455677877654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=1.1e-12  Score=136.69  Aligned_cols=154  Identities=19%  Similarity=0.260  Sum_probs=115.2

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d   84 (524)
                      .....|.|+|++|++|+.++..|.+||||++++.   ..+.+|++.++++||.|||+|.|.+..   ....|.+.|||+|
T Consensus       164 ~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d  243 (421)
T KOG1028|consen  164 FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD  243 (421)
T ss_pred             ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence            3456799999999999999977789999999985   355689999999999999999999642   3567999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEecCC-------CCeeEEEEEEEeccccccccccCcccccccccccccCCCC
Q 009822           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGP  155 (524)
Q Consensus        85 ~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~-------~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (524)
                      +++++++||++.++|..+  ......|.+|...       .|++.+.+++.+....-.    -.       -+++..+..
T Consensus       244 rfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~lt----v~-------v~kar~L~~  312 (421)
T KOG1028|consen  244 RFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLT----VV-------VIKARNLKS  312 (421)
T ss_pred             CcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEE----EE-------EEEecCCCc
Confidence            999999999999998887  3345789999752       268888888775521110    00       112334444


Q ss_pred             ccccccccccccccccCccc
Q 009822          156 TVVHQKPGPLQTIFNLLPDE  175 (524)
Q Consensus       156 ~~~~~k~~~f~~~F~lp~~e  175 (524)
                      .+..+-+++|.+..-++.+.
T Consensus       313 ~~~~~~~d~~Vk~~l~~~~~  332 (421)
T KOG1028|consen  313 MDVGGLSDPYVKVTLLDGDK  332 (421)
T ss_pred             ccCCCCCCccEEEEEecCCc
Confidence            55555566776666555553

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.45  E-value=4.4e-13  Score=114.16  Aligned_cols=94  Identities=21%  Similarity=0.368  Sum_probs=78.6

Q ss_pred             EEEEEeecCcCCCCCCCCCcEEEEEECCe------EEeeeeecCCCCCccccEEEEEecC-----CCcEEEEEEEEcCCC
Q 009822           18 LELLAAKNLIGANLNGTSDPYAIITCGSE------KRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVTIYDWDII   86 (524)
Q Consensus        18 V~vi~A~~L~~~d~~g~~dpyv~v~~~~~------~~~T~~~~~t~nP~W~e~f~f~v~~-----~~~~L~v~v~d~d~~   86 (524)
                      +-.++|++|+..+..|.+||||++++...      .++|+++++++||.|| +|.|.+..     ....|.|+|||++..
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            44579999999999999999999997533      4689999999999999 78887532     256799999999999


Q ss_pred             CCCceeEEEEEEcccCCCcccEEEEe
Q 009822           87 WKSTVLGSVIVTVESEGQTGAVWYTL  112 (524)
Q Consensus        87 ~~d~~iG~~~i~l~~~~~~~~~w~~L  112 (524)
                      ++|++||++.++++++......++.+
T Consensus        83 ~~d~~iG~~~~~l~~l~~~~~~~~~~  108 (110)
T cd04047          83 GKHDLIGEFETTLDELLKSSPLEFEL  108 (110)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCceEEe
Confidence            99999999999999986555555554

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.45  E-value=2.3e-12  Score=112.71  Aligned_cols=102  Identities=22%  Similarity=0.344  Sum_probs=85.1

Q ss_pred             eEEEEEEEEeecCcCCC--CCCCCCcEEEEEE------CCeEEeeeeecCCC-CCccccEEEEEecCCC-cEEEEEEEEc
Q 009822           14 YLIKLELLAAKNLIGAN--LNGTSDPYAIITC------GSEKRFSSMVPGSR-YPMWGEEFNFSVDELP-VQIIVTIYDW   83 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d--~~g~~dpyv~v~~------~~~~~~T~~~~~t~-nP~W~e~f~f~v~~~~-~~L~v~v~d~   83 (524)
                      ..|+|+|++|++|+..+  ..+..||||.+++      .....+|++..++. ||.|+|+|.|.+..+. ..|.|+|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            47899999999999888  5789999999998      34557899887765 9999999999986543 4599999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEecCCCC
Q 009822           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G  117 (524)
                      +.. ++++||.+.++++++..+ ..|++|..+.|
T Consensus        82 ~~~-~~~~iG~~~~~l~~l~~g-~~~~~l~~~~~  113 (128)
T cd00275          82 DSG-DDDFLGQACLPLDSLRQG-YRHVPLLDSKG  113 (128)
T ss_pred             CCC-CCcEeEEEEEEhHHhcCc-eEEEEecCCCC
Confidence            987 889999999999998543 57889876444

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.43  E-value=3.6e-13  Score=158.71  Aligned_cols=113  Identities=20%  Similarity=0.323  Sum_probs=98.9

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-EEeeeeecCCCCCccccEEEEEecCCC--cEEEEEEEEcCCCC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELP--VQIIVTIYDWDIIW   87 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~--~~L~v~v~d~d~~~   87 (524)
                      +--|.|.|+|++|+||.  +..|.+||||++.++++ +.+|++++++.||.|||+|.|.+.+++  ..|.|+|||+|.++
T Consensus      1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200       1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred             hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence            44689999999999998  45799999999999965 778999999999999999999887755  67999999999986


Q ss_pred             CCceeEEEEEEcccC--CCcccEEEEecC---CCCe---eEEEEEEE
Q 009822           88 KSTVLGSVIVTVESE--GQTGAVWYTLDS---PSGQ---VCLHIKTI  126 (524)
Q Consensus        88 ~d~~iG~~~i~l~~~--~~~~~~w~~L~~---~~G~---i~~~l~~~  126 (524)
                      +| .||++.|++.++  +.....||+|.+   +.|+   +.+++.|.
T Consensus      2055 kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200       2055 KS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred             CC-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence            55 899999999998  666789999975   6799   88888775

>PLN03008 Phospholipase D delta

Probab=99.43  E-value=1.2e-12  Score=142.02  Aligned_cols=118  Identities=19%  Similarity=0.346  Sum_probs=98.3

Q ss_pred             ceEEEEEEEEeecCcCCCC------------------------------------------CCCCCcEEEEEECCeE-Ee
Q 009822           13 AYLIKLELLAAKNLIGANL------------------------------------------NGTSDPYAIITCGSEK-RF   49 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~-~~   49 (524)
                      .|.|.++|.+|++|+.+|.                                          .+++||||.+.+++.+ .+
T Consensus        13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R   92 (868)
T PLN03008         13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR   92 (868)
T ss_pred             ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence            4789999999999975321                                          2467999999998764 58


Q ss_pred             eeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEecCC-------CCeeE
Q 009822           50 SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVC  120 (524)
Q Consensus        50 T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~-------~G~i~  120 (524)
                      |+++++++||+|||+|.|.+..+...|.|+|||+|.++ +++||++.|+|.++  +...+.|++|...       .|+|+
T Consensus        93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~  171 (868)
T PLN03008         93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIF  171 (868)
T ss_pred             EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEE
Confidence            99999999999999999999887788999999999996 57999999999998  5567899999652       36788


Q ss_pred             EEEEEEecccc
Q 009822          121 LHIKTIKLPVN  131 (524)
Q Consensus       121 ~~l~~~~~~~~  131 (524)
                      ++|.+.+....
T Consensus       172 v~lqf~pv~~~  182 (868)
T PLN03008        172 IDMKFTPFDQI  182 (868)
T ss_pred             EEEEEEEcccc
Confidence            88888766543

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=1.9e-12  Score=133.44  Aligned_cols=125  Identities=29%  Similarity=0.502  Sum_probs=107.0

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCC------
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII------   86 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~------   86 (524)
                      ...++++|+.|++|..+|..|++||||.+.++..+.+|+++...+||+|||.|.|.+++...++++.|||.|.-      
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr  373 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR  373 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999899999999998842      


Q ss_pred             -----CCCceeEEEEEEcccCCCcccEEEEecCC------CCeeEEEEEEEeccccccccccCcc
Q 009822           87 -----WKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTIKLPVNASRVMNGYA  140 (524)
Q Consensus        87 -----~~d~~iG~~~i~l~~~~~~~~~w~~L~~~------~G~i~~~l~~~~~~~~~~~~~~~~~  140 (524)
                           -.|+|+|+..|.+..+....+.||.|..+      +|.|++.|.+.   ++++..+-.|.
T Consensus       374 qkl~resddflgqtvievrtlsgemdvwynlekrtdksavsgairlhisve---ikgeekvapyh  435 (1283)
T KOG1011|consen  374 QKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVE---IKGEEKVAPYH  435 (1283)
T ss_pred             HHhhhcccccccceeEEEEecccchhhhcchhhccchhhccceEEEEEEEE---EcCccccccce
Confidence                 35899999999999998888999999753      48888877754   44444444443

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.28  E-value=1.9e-11  Score=98.17  Aligned_cols=81  Identities=26%  Similarity=0.491  Sum_probs=72.3

Q ss_pred             EEEEEEEeecCcCCCCCCCCCcEEEEEECC---eEEeeeeecCCCCCccccEEEEEec-CCCcEEEEEEEEcCCCCCCce
Q 009822           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDIIWKSTV   91 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~v~-~~~~~L~v~v~d~d~~~~d~~   91 (524)
                      |.|+|++|+||...+..+..+|||++.+..   ...+|++..++.+|.|+++|.|.+. .....|.|+|||++..+++++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            789999999999988888999999999975   6689999999999999999999964 334559999999999988999


Q ss_pred             eEEEE
Q 009822           92 LGSVI   96 (524)
Q Consensus        92 iG~~~   96 (524)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd00030 C2 C2 domain

Probab=99.14  E-value=4.3e-10  Score=92.34  Aligned_cols=97  Identities=30%  Similarity=0.574  Sum_probs=84.2

Q ss_pred             EEEEEEEeecCcCCCCCCCCCcEEEEEECC-eEEeeeeecCCCCCccccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 009822           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG   93 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~v~d~d~~~~d~~iG   93 (524)
                      |.|+|++|++|......+..+|||.+.+.. ...+|.+...+.+|.|++.|.|.+.. ....|.++||+.+..+.+.+||
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            468999999998877778899999999987 77899999999999999999999876 5677999999999887789999


Q ss_pred             EEEEEcccCC---CcccEEEEe
Q 009822           94 SVIVTVESEG---QTGAVWYTL  112 (524)
Q Consensus        94 ~~~i~l~~~~---~~~~~w~~L  112 (524)
                      .+.+++..+.   .....|++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          81 EVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEeHHHhhhcCCcCcceecC
Confidence            9999999874   445677764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.11  E-value=8.4e-10  Score=90.99  Aligned_cols=87  Identities=24%  Similarity=0.527  Sum_probs=78.0

Q ss_pred             EEEEEEEeecCcCCCCCCCCCcEEEEEECCe---EEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCce
Q 009822           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSE---KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV   91 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~---~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~~   91 (524)
                      |.|+|++|++|......+..+|||.+.+...   ..+|+++.++.+|.|+++|.|.+... ...|.|+|||.+..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            6899999999988876678999999999764   68899999999999999999998776 7889999999998777899


Q ss_pred             eEEEEEEcccC
Q 009822           92 LGSVIVTVESE  102 (524)
Q Consensus        92 iG~~~i~l~~~  102 (524)
                      +|.+.+++.++
T Consensus        82 ~G~~~~~l~~~   92 (101)
T smart00239       82 IGQVTIPLSDL   92 (101)
T ss_pred             eEEEEEEHHHc
Confidence            99999999887

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.08  E-value=3e-10  Score=119.24  Aligned_cols=114  Identities=24%  Similarity=0.389  Sum_probs=100.0

Q ss_pred             eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeE-EeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009822           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~i   92 (524)
                      ..|.|.|.+|+||++.+..|.+||||.+.++.+. .+|.++.+++.|-|.|+|.|.+...-..|.|-|||.| +++|+.|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I   83 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII   83 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence            3588999999999999999999999999998655 5899999999999999999999876777999999999 8999999


Q ss_pred             EEEEEEcccC--CCcccEEEEecC------CCCeeEEEEEEEec
Q 009822           93 GSVIVTVESE--GQTGAVWYTLDS------PSGQVCLHIKTIKL  128 (524)
Q Consensus        93 G~~~i~l~~~--~~~~~~w~~L~~------~~G~i~~~l~~~~~  128 (524)
                      |.+.|.=.++  .++.+.|+.|.+      -.|+|++++.+...
T Consensus        84 GKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~  127 (800)
T KOG2059|consen   84 GKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEA  127 (800)
T ss_pred             ceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccc
Confidence            9998887776  567899999976      24899888886533

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.04  E-value=1.4e-09  Score=94.79  Aligned_cols=87  Identities=18%  Similarity=0.283  Sum_probs=73.6

Q ss_pred             EEEEEEEeecCcCC--CCCCC--CCcEEEEEECC---eEEeeeeecCCCC--CccccEEEEEecC---------------
Q 009822           16 IKLELLAAKNLIGA--NLNGT--SDPYAIITCGS---EKRFSSMVPGSRY--PMWGEEFNFSVDE---------------   71 (524)
Q Consensus        16 L~V~vi~A~~L~~~--d~~g~--~dpyv~v~~~~---~~~~T~~~~~t~n--P~W~e~f~f~v~~---------------   71 (524)
                      |+|.|.+|++++..  +..|.  +||||+..+..   .+++|.+..+++|  |.||+.|.|++..               
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            78999999996543  34664  99999999853   5678999999999  9999999998643               


Q ss_pred             ---------CCcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009822           72 ---------LPVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (524)
Q Consensus        72 ---------~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~  102 (524)
                               ....|.++|||.|.+++|++||.+.++|..+
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l  121 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSIL  121 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhc
Confidence                     1345999999999999999999999999987

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=1.6e-09  Score=113.21  Aligned_cols=103  Identities=26%  Similarity=0.447  Sum_probs=83.9

Q ss_pred             CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecC--C-CcEEEEEEE
Q 009822           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIY   81 (524)
Q Consensus        10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~--~-~~~L~v~v~   81 (524)
                      .+..|.|+|.|++|++|+.++..+..||||++.+-     ..+.+|.+.++++||.|||+|.|.+..  . ...|.|+||
T Consensus       294 ~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~  373 (421)
T KOG1028|consen  294 LPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVW  373 (421)
T ss_pred             ecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEE
Confidence            35679999999999999999999999999999873     234578899999999999999998763  2 345999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEe
Q 009822           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTL  112 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L  112 (524)
                      |+|.++++++||++.+....-+....+|...
T Consensus       374 d~d~~~~~~~iG~~~lG~~~~~~~~~hW~~m  404 (421)
T KOG1028|consen  374 DHDTLGSNDLIGRCILGSDSTGEEVRHWQEM  404 (421)
T ss_pred             EcccccccceeeEEEecCCCCchHHHHHHHH
Confidence            9999999999999888877533333444443

>PLN02223 phosphoinositide phospholipase C

Probab=98.96  E-value=5.4e-09  Score=109.65  Aligned_cols=106  Identities=18%  Similarity=0.283  Sum_probs=84.8

Q ss_pred             ceEEEEEEEEeecCcCC-----CCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecCCCc-EEEEEEE
Q 009822           13 AYLIKLELLAAKNLIGA-----NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPV-QIIVTIY   81 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~-----d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~-~L~v~v~   81 (524)
                      ...|.|+|+.|++++..     +.....||||++.+.     ....+|.+..++.||.|||+|.|.+..+.. .|+|+||
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            46799999999987511     223568999999973     234577777889999999999999876554 4899999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCee
Q 009822           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQV  119 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~i  119 (524)
                      |+|..++++|+|++.+|+..+..+ -++++|..+.|..
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~G-yR~VpL~~~~g~~  524 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEG-IRAVPLYDERGKA  524 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCC-ceeEeccCCCcCC
Confidence            999888899999999999999765 3678887766664

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.86  E-value=1.4e-08  Score=112.54  Aligned_cols=120  Identities=17%  Similarity=0.352  Sum_probs=97.4

Q ss_pred             CCCCceEEEEEEEEeecCcCCC--CCCCCCcEEEEEECC-eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCC
Q 009822            9 QTNSAYLIKLELLAAKNLIGAN--LNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI   85 (524)
Q Consensus         9 ~~~~~~~L~V~vi~A~~L~~~d--~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~   85 (524)
                      .+..-|+|.|+|.+|++|...+  ..+..|||+.+.... ...+|++.++++||+|||+|.+.+......|.++|||.+.
T Consensus       431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~  510 (1227)
T COG5038         431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS  510 (1227)
T ss_pred             cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence            6677899999999999999888  689999999999743 3459999999999999999999998888999999999999


Q ss_pred             CCCCceeEEEEEEcccC--CCc-ccEEEEecC---CCCeeEEEEEEEec
Q 009822           86 IWKSTVLGSVIVTVESE--GQT-GAVWYTLDS---PSGQVCLHIKTIKL  128 (524)
Q Consensus        86 ~~~d~~iG~~~i~l~~~--~~~-~~~w~~L~~---~~G~i~~~l~~~~~  128 (524)
                      ..+|+.+|.+.++|..+  .+. ...-+.+..   ..|++...+++.+.
T Consensus       511 ~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~  559 (1227)
T COG5038         511 FKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPV  559 (1227)
T ss_pred             cCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecc
Confidence            99999999999999876  111 222333322   23777777766654

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.84  E-value=9e-09  Score=114.09  Aligned_cols=106  Identities=23%  Similarity=0.381  Sum_probs=90.7

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-EEeeeeecCCCCCccccEEEEEec-CCCcEEEEEEEEcCCCCC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDIIWK   88 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~-~~~~~L~v~v~d~d~~~~   88 (524)
                      .+.|-|.|.+..|.||+..|.+|.+||||.+.+... .++|+++++++||.|||.+.+.+. .....+.+.|+|||...+
T Consensus      1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~k 1116 (1227)
T COG5038        1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEK 1116 (1227)
T ss_pred             cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCC
Confidence            457889999999999999999999999999999876 578999999999999999999986 456779999999999999


Q ss_pred             CceeEEEEEEcccCCCcc-c-EEEEecCCC
Q 009822           89 STVLGSVIVTVESEGQTG-A-VWYTLDSPS  116 (524)
Q Consensus        89 d~~iG~~~i~l~~~~~~~-~-~w~~L~~~~  116 (524)
                      ++.||.+.++|..+.+.. . .-.+|.++.
T Consensus      1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk~ 1146 (1227)
T COG5038        1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGKT 1146 (1227)
T ss_pred             ccccccccccHhhcCcCCccceeeeccCcc
Confidence            999999999999984332 2 334565543

>PLN02952 phosphoinositide phospholipase C

Probab=98.84  E-value=2.4e-08  Score=106.96  Aligned_cols=105  Identities=16%  Similarity=0.254  Sum_probs=84.1

Q ss_pred             ceEEEEEEEEeecCcCC------CCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecCCC-cEEEEEE
Q 009822           13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTI   80 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~------d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~v~v   80 (524)
                      ...|.|+|+.|++|+..      +.....||||++.+-     ..+.+|+++.++.||.||++|.|.+..+. ..|+|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            56899999999987431      112335999999873     35568999999999999999999976543 3489999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~  118 (524)
                      ||+|..+.++|+|++.++|..+..+. +|++|..+.|.
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy-R~VpL~~~~G~  585 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI-RSVPLHDKKGE  585 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc-eeEeCcCCCCC
Confidence            99999888999999999999997664 59999765544

>PLN02270 phospholipase D alpha

Probab=98.79  E-value=6.1e-08  Score=105.91  Aligned_cols=116  Identities=18%  Similarity=0.313  Sum_probs=94.4

Q ss_pred             ceEEEEEEEEeecCcCCC------------------CCCCCCcEEEEEECCeEE-eeeeecCC-CCCccccEEEEEecCC
Q 009822           13 AYLIKLELLAAKNLIGAN------------------LNGTSDPYAIITCGSEKR-FSSMVPGS-RYPMWGEEFNFSVDEL   72 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d------------------~~g~~dpyv~v~~~~~~~-~T~~~~~t-~nP~W~e~f~f~v~~~   72 (524)
                      .|.|.|+|++|++|+..+                  ..+++|||+.+.+++... +|+++.+. .||.|+|.|.+++.-.
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            478999999999998631                  135689999999987665 99999874 6999999999999887


Q ss_pred             CcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEecCCC-------CeeEEEEEEEecc
Q 009822           73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-------GQVCLHIKTIKLP  129 (524)
Q Consensus        73 ~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~~-------G~i~~~l~~~~~~  129 (524)
                      ...+.|+|.|.|.++. .+||.+.|++.++  +...+.|+++....       .+|++++.+....
T Consensus        87 ~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~  151 (808)
T PLN02270         87 ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT  151 (808)
T ss_pred             cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence            8899999999998865 4999999999998  55688999996532       2466677666544

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.75  E-value=2.4e-09  Score=112.38  Aligned_cols=116  Identities=28%  Similarity=0.491  Sum_probs=93.2

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC--------------------eE-----------EeeeeecCCCCC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS--------------------EK-----------RFSSMVPGSRYP   59 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--------------------~~-----------~~T~~~~~t~nP   59 (524)
                      +....+.|.++.|.||.++|.+|.+|||+.+.+-.                    ..           +-|++.++|+||
T Consensus       111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP  190 (1103)
T KOG1328|consen  111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP  190 (1103)
T ss_pred             CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence            45566778889999999999999999999876410                    00           127788899999


Q ss_pred             ccccEEEEEecCCC-cEEEEEEEEcCC---------------------------------CCC---CceeEEEEEEcccC
Q 009822           60 MWGEEFNFSVDELP-VQIIVTIYDWDI---------------------------------IWK---STVLGSVIVTVESE  102 (524)
Q Consensus        60 ~W~e~f~f~v~~~~-~~L~v~v~d~d~---------------------------------~~~---d~~iG~~~i~l~~~  102 (524)
                      .|+|.|.|.+.+.. ..+.+-+||+|.                                 .+.   |||+|++.|+|.++
T Consensus       191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei  270 (1103)
T KOG1328|consen  191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI  270 (1103)
T ss_pred             chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence            99999999998754 559999999983                                 123   78999999999999


Q ss_pred             -CCcccEEEEecCCC------CeeEEEEEEE
Q 009822          103 -GQTGAVWYTLDSPS------GQVCLHIKTI  126 (524)
Q Consensus       103 -~~~~~~w~~L~~~~------G~i~~~l~~~  126 (524)
                       ..+.++||.|++++      |.+++.|...
T Consensus       271 P~~Gld~WFkLepRS~~S~VqG~~~LklwLs  301 (1103)
T KOG1328|consen  271 PPDGLDQWFKLEPRSDKSKVQGQVKLKLWLS  301 (1103)
T ss_pred             CcchHHHHhccCcccccccccceEEEEEEEe
Confidence             56789999998843      8888887754

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.74  E-value=5.9e-08  Score=103.88  Aligned_cols=105  Identities=15%  Similarity=0.149  Sum_probs=83.6

Q ss_pred             ceEEEEEEEEeecCcCC------CCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecCCC-cEEEEEE
Q 009822           13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTI   80 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~------d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~v~v   80 (524)
                      ..+|.|+|+.|++++..      +.....||||++.+-     ....+|++..++.||.|||+|.|.+..+. ..|+|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46899999999987421      223457999999973     33457888888999999999999976544 4489999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~  118 (524)
                      +|+|..++++|+|+..+++..+..+. +.++|..+.|.
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-R~V~L~~~~G~  584 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGI-HAVPLFNRKGV  584 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCcc-ceEeccCCCcC
Confidence            99998889999999999999997663 46788776665

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.72  E-value=3.2e-08  Score=101.64  Aligned_cols=113  Identities=18%  Similarity=0.314  Sum_probs=94.5

Q ss_pred             eEEEEEEEEeecCcCCCCC-CCCCcEEEEEECCeEEeeeeecCCCCCccc-cEEEEEecC---CCcEEEEEEEEcCCCCC
Q 009822           14 YLIKLELLAAKNLIGANLN-GTSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDE---LPVQIIVTIYDWDIIWK   88 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~-g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~-e~f~f~v~~---~~~~L~v~v~d~d~~~~   88 (524)
                      |.|-|.|..|++|+.+|.. ...|.||.+++.+..++|.+..+++||.|| +.|.|++.+   .+..|.+++.|+|.++.
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa   82 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA   82 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence            6788999999999999863 458999999999999999999999999998 779999875   34569999999999999


Q ss_pred             CceeEEEEEEcccC----------C--CcccEEEEecC----CCCeeEEEEEEE
Q 009822           89 STVLGSVIVTVESE----------G--QTGAVWYTLDS----PSGQVCLHIKTI  126 (524)
Q Consensus        89 d~~iG~~~i~l~~~----------~--~~~~~w~~L~~----~~G~i~~~l~~~  126 (524)
                      +|-||.+.|+++++          +  .....|+++..    -.|+|++.+.+.
T Consensus        83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvd  136 (1169)
T KOG1031|consen   83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVD  136 (1169)
T ss_pred             ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEe
Confidence            99999999999976          1  23468999854    346776655544

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.69  E-value=7.8e-08  Score=78.98  Aligned_cols=82  Identities=15%  Similarity=0.255  Sum_probs=68.3

Q ss_pred             EEEEEEEeecCcCCC---CCCCCCcEEEEEECCe-EEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009822           16 IKLELLAAKNLIGAN---LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (524)
Q Consensus        16 L~V~vi~A~~L~~~d---~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~   91 (524)
                      |.|+|..|+++.-.+   ..+.+||||.++++.. +.+|++.   .||.|||+|.|.+. ....+.+.|||... ...-.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence            578999999998777   5778899999999876 6788774   79999999999995 47889999999854 23457


Q ss_pred             eEEEEEEcccC
Q 009822           92 LGSVIVTVESE  102 (524)
Q Consensus        92 iG~~~i~l~~~  102 (524)
                      ||..++.++++
T Consensus        76 i~llW~~~sdi   86 (109)
T cd08689          76 VGLLWLRLSDI   86 (109)
T ss_pred             eeeehhhHHHH
Confidence            89999988865

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.67  E-value=1.9e-07  Score=99.94  Aligned_cols=105  Identities=14%  Similarity=0.230  Sum_probs=82.8

Q ss_pred             ceEEEEEEEEeecCc----CC--CCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecCCC-cEEEEEE
Q 009822           13 AYLIKLELLAAKNLI----GA--NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTI   80 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~----~~--d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~v~v   80 (524)
                      ...|.|+|+.|++++    ..  +.....||||++.+.     ..+.+|+++.++.||.|+|+|.|.+..+. ..|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            467999999998752    11  123457999999973     34568999999899999999999976544 4489999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~  118 (524)
                      ||+|..+.++|+|+..+++..+..+. +.++|..+.|.
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy-R~V~L~~~~g~  567 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGI-RAFPLHSRKGE  567 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCcc-ceEEccCCCcC
Confidence            99998888999999999999997653 46778766655

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.63  E-value=1.2e-07  Score=101.50  Aligned_cols=105  Identities=20%  Similarity=0.323  Sum_probs=83.5

Q ss_pred             EEEEEEEEeecCcCCC-C---CCCCCcEEEEEECC-----eEEeeee-ecCCCCCccccEEEEEecCCCcE-EEEEEEEc
Q 009822           15 LIKLELLAAKNLIGAN-L---NGTSDPYAIITCGS-----EKRFSSM-VPGSRYPMWGEEFNFSVDELPVQ-IIVTIYDW   83 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d-~---~g~~dpyv~v~~~~-----~~~~T~~-~~~t~nP~W~e~f~f~v~~~~~~-L~v~v~d~   83 (524)
                      +|.|.|+.+.++.+.- .   ...+||||.+++-+     ...+|++ ..++-+|.|+|+|.|.+..+.-. |+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            8999999999775442 2   24589999999743     3457884 46789999999999998765544 89999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEecCCCCeeE
Q 009822           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC  120 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~i~  120 (524)
                      |..++|+|+|+..+|+.++..+.. -++|.++.|+..
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyR-hVpL~~~~G~~~  732 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYR-HVPLLSREGEAL  732 (746)
T ss_pred             CCCCcccccceeeccHHHhhCcee-eeeecCCCCccc
Confidence            999999999999999999976643 467766677653

>PLN02228 Phosphoinositide phospholipase C

Probab=98.60  E-value=3.3e-07  Score=97.83  Aligned_cols=105  Identities=12%  Similarity=0.178  Sum_probs=82.4

Q ss_pred             ceEEEEEEEEeecCcC---CC---CCCCCCcEEEEEEC-----CeEEeeeeecCCCCCcc-ccEEEEEecCCC-cEEEEE
Q 009822           13 AYLIKLELLAAKNLIG---AN---LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMW-GEEFNFSVDELP-VQIIVT   79 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~---~d---~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W-~e~f~f~v~~~~-~~L~v~   79 (524)
                      ...|.|+|++|++|+.   .+   .....||||.+.+.     ..+.+|+++.++.||.| +++|.|.+..+. ..|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            4579999999998731   11   12347999999973     34568999988899999 999999976544 448999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822           80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        80 v~d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~  118 (524)
                      |+|+|..+.++|+|++.+++..+..+. +.++|.++.|+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~GY-R~VpL~~~~G~  547 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSGV-RAVRLHDRAGK  547 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCCe-eEEEccCCCCC
Confidence            999998888999999999999996653 46688766655

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.55  E-value=4.2e-08  Score=103.25  Aligned_cols=92  Identities=25%  Similarity=0.408  Sum_probs=80.7

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-------EEeeeeecCCCCCccccEEEEEecCC-----CcEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIV   78 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~v~~~-----~~~L~v   78 (524)
                      .+.-.|.|.|+-|+++.+.|.+|.+||||++.+...       .++|+++.+++||+|+|+|.|.+...     ...|.|
T Consensus       944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen  944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred             ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence            445578899999999999999999999999998643       45899999999999999999998642     233999


Q ss_pred             EEEEcCCCCCCceeEEEEEEcccC
Q 009822           79 TIYDWDIIWKSTVLGSVIVTVESE  102 (524)
Q Consensus        79 ~v~d~d~~~~d~~iG~~~i~l~~~  102 (524)
                      +|+|+|-++.+||-|++-+.|+.+
T Consensus      1024 TVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred             EeeccceecccccchHHHHhhCCC
Confidence            999999999999999999999987

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.55  E-value=3.7e-07  Score=97.36  Aligned_cols=134  Identities=16%  Similarity=0.214  Sum_probs=92.0

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEe-eeeecCCCCCccc-cEEEEEecCCCcE-EEEEEEEcC
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRF-SSMVPGSRYPMWG-EEFNFSVDELPVQ-IIVTIYDWD   84 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~-T~~~~~t~nP~W~-e~f~f~v~~~~~~-L~v~v~d~d   84 (524)
                      .-.|.|.|+.|+.|+... .|-..|||.+.+-     ..+++ |.+..+++||+|| |.|+|.+.++.-. |+|.|||.|
T Consensus      1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred             ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence            356889999999998543 4556799999862     34444 5555789999999 9999999876544 999999999


Q ss_pred             CCCCCceeEEEEEEcccCCCcccEEEEecCC------CCeeEEEEEEEeccccccccccCcccccccccccc
Q 009822           85 IIWKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASL  150 (524)
Q Consensus        85 ~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~------~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (524)
                      .++...|||++..|+..+..+ -+-++|.+.      ...+.+.+.  ..+......+........++|++.
T Consensus      1143 mfs~~~FiaqA~yPv~~ik~G-fRsVpLkN~ySEdlELaSLLv~i~--m~~~~~~~~~~~sS~~~lr~R~~~ 1211 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG-FRSVPLKNGYSEDLELASLLVFIE--MRPVLESEEELYSSCRQLRRRQEE 1211 (1267)
T ss_pred             ccCCcceeeeeecchhhhhcc-ceeeecccCchhhhhhhhheeeeE--eccccCccccccchhHHHHHHHhh
Confidence            999989999999999988443 234566542      122223333  333333333444444555556543

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.39  E-value=1.1e-06  Score=92.96  Aligned_cols=93  Identities=25%  Similarity=0.440  Sum_probs=73.1

Q ss_pred             EEeecCcCCCCCCCCCcEEEEEECCeEE----eeeeecCCCCCccccEEEEEecCC----------------CcEEEEEE
Q 009822           21 LAAKNLIGANLNGTSDPYAIITCGSEKR----FSSMVPGSRYPMWGEEFNFSVDEL----------------PVQIIVTI   80 (524)
Q Consensus        21 i~A~~L~~~d~~g~~dpyv~v~~~~~~~----~T~~~~~t~nP~W~e~f~f~v~~~----------------~~~L~v~v   80 (524)
                      +.++.+.+.. ++.+|||+++...+...    +|++.+.+.+|.|+|.|.|.+...                ...|++.+
T Consensus       138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l  216 (800)
T KOG2059|consen  138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL  216 (800)
T ss_pred             hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence            4445554443 56699999999765443    899999999999999999987543                23489999


Q ss_pred             EE-cCCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822           81 YD-WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        81 ~d-~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~  114 (524)
                      |+ ++....++|+|++.+++...  ......||.|++
T Consensus       217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp  253 (800)
T KOG2059|consen  217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQP  253 (800)
T ss_pred             ccchhhhhhhhhceeEEeehhhhhhccCccceEEEec
Confidence            98 66666799999999999987  456678999986

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=98.16  E-value=1.3e-06  Score=91.90  Aligned_cols=102  Identities=22%  Similarity=0.373  Sum_probs=84.3

Q ss_pred             ccccccccccccccCcccceEEeeeeeeee---ccceeeEEEeecceEEEEeccCcceeEEEEeccccccccccccc-ee
Q 009822          158 VHQKPGPLQTIFNLLPDEFVELSYSCVIER---SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA-FI  233 (524)
Q Consensus       158 ~~~k~~~f~~~F~lp~~e~l~~~~~c~l~~---~~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~-~~  233 (524)
                      .+.+++.| .+|+||  |.+..+..|.++.   ....+||||+|++++||.|...+ ...+++|+..|..|++.... .+
T Consensus         6 ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~~   81 (671)
T KOG4347|consen    6 ARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSLF   81 (671)
T ss_pred             hhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCccccc
Confidence            35678899 999999  9999999998876   34589999999999999998865 48999999999999999844 44


Q ss_pred             cCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHH
Q 009822          234 NPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQ  278 (524)
Q Consensus       234 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~  278 (524)
                      ...|.+.|.               +...+.|..+..|+..+--+.
T Consensus        82 ~~~i~~~~~---------------~~~~~~f~~~~~r~~~~~k~~  111 (671)
T KOG4347|consen   82 TQLISLFTS---------------NMVGMRFGGLTERLKLLSKLH  111 (671)
T ss_pred             hhhhHHhhc---------------CcceEEecchhhHHHHHHHHh
Confidence            447777775               567899999999998874333

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.04  E-value=3.1e-06  Score=92.73  Aligned_cols=91  Identities=22%  Similarity=0.433  Sum_probs=80.6

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEE--eeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR--FSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIW   87 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~--~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~   87 (524)
                      +-..+++|++++|-+|.+.|.+|.+|||+.+.++....  +...+.+++||+|++-|.+...-+ ...|.++|||+|..+
T Consensus       610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~  689 (1105)
T KOG1326|consen  610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA  689 (1105)
T ss_pred             cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence            55677889999999999999999999999999997774  678889999999999999886543 455999999999999


Q ss_pred             CCceeEEEEEEccc
Q 009822           88 KSTVLGSVIVTVES  101 (524)
Q Consensus        88 ~d~~iG~~~i~l~~  101 (524)
                      .|+.||+..++|..
T Consensus       690 ~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  690 QDEKIGETTIDLEN  703 (1105)
T ss_pred             ccchhhceehhhhh
Confidence            99999999999874

>PLN02352 phospholipase D epsilon

Probab=97.95  E-value=7.9e-05  Score=81.79  Aligned_cols=111  Identities=12%  Similarity=0.159  Sum_probs=81.9

Q ss_pred             ceEEEEEEEEeecCcCC----CCC-CCCCcEEEEEECCeEE-eeeeecCCCCCccccEEEEEecCCC-cEEEEEEEEcCC
Q 009822           13 AYLIKLELLAAKNLIGA----NLN-GTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDI   85 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~----d~~-g~~dpyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~v~v~d~d~   85 (524)
                      .|+|.++|.+|+-+...    +.. ...+||+.+.++.... +|   .+..||.|+|.|.+.+.-.. ..+.|+|.|   
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---   82 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---   82 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence            58899999999843322    111 1239999999987664 67   55569999999999987655 689999987   


Q ss_pred             CCCCceeEEEEEEcccC--CCc-ccEEEEecCCC-----C-eeEEEEEEEecccc
Q 009822           86 IWKSTVLGSVIVTVESE--GQT-GAVWYTLDSPS-----G-QVCLHIKTIKLPVN  131 (524)
Q Consensus        86 ~~~d~~iG~~~i~l~~~--~~~-~~~w~~L~~~~-----G-~i~~~l~~~~~~~~  131 (524)
                        ...+||.+.|++.++  +.. .+.|+++....     | ++++++.+.+....
T Consensus        83 --~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  135 (758)
T PLN02352         83 --KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE  135 (758)
T ss_pred             --CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence              357999999999998  333 78999996533     3 56666666655433

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=97.80  E-value=2e-05  Score=87.56  Aligned_cols=102  Identities=19%  Similarity=0.273  Sum_probs=84.2

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEE-ec--C-CCcEEEEEEEEc
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFS-VD--E-LPVQIIVTIYDW   83 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~-v~--~-~~~~L~v~v~d~   83 (524)
                      .++|+|-|.-|++|.-..-+..+||||+.++..     .+++|++++++.+|.|||..... +.  . ..++|.++||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            578999999999997666577899999999842     34589999999999999998887 32  1 247799999999


Q ss_pred             CCCCCCceeEEEEEEcccCC--CcccEEEEecC
Q 009822           84 DIIWKSTVLGSVIVTVESEG--QTGAVWYTLDS  114 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~~--~~~~~w~~L~~  114 (524)
                      +.+..+.|+|.+.|+|.++.  .....||.|..
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence            99888999999999999884  34458999863

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=2.1e-05  Score=76.71  Aligned_cols=98  Identities=18%  Similarity=0.285  Sum_probs=78.8

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEEcC
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d~d   84 (524)
                      ..-|.|++++|..|..+|.+|-+|||+..++..     .+.+|.+.+++++|.|++.|.+.+...   ...+.|.|||++
T Consensus       232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~  311 (362)
T KOG1013|consen  232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYD  311 (362)
T ss_pred             CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccC
Confidence            445789999999999999999999999998742     234788999999999999999988643   345999999999


Q ss_pred             CCCCCceeEEEEEEcccCCCcccEEE
Q 009822           85 IIWKSTVLGSVIVTVESEGQTGAVWY  110 (524)
Q Consensus        85 ~~~~d~~iG~~~i~l~~~~~~~~~w~  110 (524)
                      ..+..+++|-+.+.+........+|+
T Consensus       312 ~G~s~d~~GG~~~g~~rr~~v~~h~g  337 (362)
T KOG1013|consen  312 IGKSNDSIGGSMLGGYRRGEVHKHWG  337 (362)
T ss_pred             CCcCccCCCcccccccccchhhcCcc
Confidence            88788899987766665544444444

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.58  E-value=0.00014  Score=61.89  Aligned_cols=97  Identities=20%  Similarity=0.323  Sum_probs=73.1

Q ss_pred             EEEEEEEeecCcCCC-----------C--CCCCCcEEEEEEC----CeEEeeeeecCCCCCccccEEEEEec--------
Q 009822           16 IKLELLAAKNLIGAN-----------L--NGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVD--------   70 (524)
Q Consensus        16 L~V~vi~A~~L~~~d-----------~--~g~~dpyv~v~~~----~~~~~T~~~~~t~nP~W~e~f~f~v~--------   70 (524)
                      |.|.|++|.||...-           .  .=..|+||.+.+.    .+..+|+++.++-.|.|+..++|.+.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            468889999986431           0  1135899999853    45678999999999999999999864        


Q ss_pred             C--------CCcEEEEEEEEcCCC----------CCCceeEEEEEEcccC---CCcccEEEEe
Q 009822           71 E--------LPVQIIVTIYDWDII----------WKSTVLGSVIVTVESE---GQTGAVWYTL  112 (524)
Q Consensus        71 ~--------~~~~L~v~v~d~d~~----------~~d~~iG~~~i~l~~~---~~~~~~w~~L  112 (524)
                      +        ....+.++||+.+.-          .+|-+||.+.||+.++   ..+...||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1        123589999997632          3456899999999987   5678899975

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.55  E-value=1.9e-05  Score=86.82  Aligned_cols=102  Identities=18%  Similarity=0.226  Sum_probs=84.2

Q ss_pred             CceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEec----------CCCcEEEEEEE
Q 009822           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD----------ELPVQIIVTIY   81 (524)
Q Consensus        12 ~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~----------~~~~~L~v~v~   81 (524)
                      ..+.+++++.+|+.|...+..+.+|||+.+...++.+.|.++.++++|.|+++..|.-.          .....+.++||
T Consensus       204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~y  283 (1105)
T KOG1326|consen  204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVY  283 (1105)
T ss_pred             hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEee
Confidence            34567888899999999999999999999999999999999999999999999999721          12344889999


Q ss_pred             EcCCCCCCceeEEEEEEcccC-CCcccEEEEec
Q 009822           82 DWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD  113 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~-~~~~~~w~~L~  113 (524)
                      |.++.+.++|+|.......-. ..+.-.|+++-
T Consensus       284 d~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~  316 (1105)
T KOG1326|consen  284 DLDRSGINEFKGRKKQRPYVMVQCPALKWVPTM  316 (1105)
T ss_pred             hhhhhchHHhhcccccceEEEecCCccceEEee
Confidence            999999999999976554433 34566788774

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=9.7e-05  Score=73.40  Aligned_cols=103  Identities=15%  Similarity=0.252  Sum_probs=83.9

Q ss_pred             CceEEEEEEEEeecCcCCCC-CCCCCcEEEEEECCe-----EEeeeeecCCCCCccccEEEEEecCCCcEEEEEEE-EcC
Q 009822           12 SAYLIKLELLAAKNLIGANL-NGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWD   84 (524)
Q Consensus        12 ~~~~L~V~vi~A~~L~~~d~-~g~~dpyv~v~~~~~-----~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~-d~d   84 (524)
                      ..|.|.|.|++|++|..+.- ...++|||.+++...     +.+|+...++++|.+.+...|+-..+...|.++|| |+.
T Consensus       267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg  346 (405)
T KOG2060|consen  267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG  346 (405)
T ss_pred             ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence            46889999999999987653 336899999997432     34688889999998888888887777788999999 677


Q ss_pred             CCCCCceeEEEEEEcccCC---CcccEEEEecC
Q 009822           85 IIWKSTVLGSVIVTVESEG---QTGAVWYTLDS  114 (524)
Q Consensus        85 ~~~~d~~iG~~~i~l~~~~---~~~~~w~~L~~  114 (524)
                      ++.++.|+|.+++-+.+++   .....||+|.+
T Consensus       347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg  379 (405)
T KOG2060|consen  347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG  379 (405)
T ss_pred             ccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence            7778889999999999983   35678999975

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=3.9e-05  Score=74.90  Aligned_cols=91  Identities=18%  Similarity=0.192  Sum_probs=75.4

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEe-cCC---CcEEEEEEEEc
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSV-DEL---PVQIIVTIYDW   83 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v-~~~---~~~L~v~v~d~   83 (524)
                      ...+.+++.+|.+|.+++..+..|||+.+.+..     .+.+|++..+++||.|+++..... ...   ...+++.|+|.
T Consensus        92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn  171 (362)
T KOG1013|consen   92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN  171 (362)
T ss_pred             hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence            346889999999999999999999999998742     346788999999999999877763 221   23488899999


Q ss_pred             CCCCCCceeEEEEEEcccCC
Q 009822           84 DIIWKSTVLGSVIVTVESEG  103 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~~  103 (524)
                      +.+..++++|+.++++..+.
T Consensus       172 ~~~~~~~sqGq~r~~lkKl~  191 (362)
T KOG1013|consen  172 DKKTHNESQGQSRVSLKKLK  191 (362)
T ss_pred             cccccccCcccchhhhhccC
Confidence            99999999999998888774

>PF14470 bPH_3: Bacterial PH domain

Probab=97.31  E-value=0.004  Score=51.04  Aligned_cols=85  Identities=19%  Similarity=0.210  Sum_probs=67.8

Q ss_pred             cCcccceEEeeeeeeee-ccceeeEEEeecceEEEEecc-CcceeEEEEeccccccccccccceecCcEEEEEecCCCCC
Q 009822          171 LLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA-FSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGH  248 (524)
Q Consensus       171 lp~~e~l~~~~~c~l~~-~~~~~Gr~yit~~~~cF~s~~-~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~~  248 (524)
                      |.++|.++....|.+.. .....|-+++|+.+|.|++.. +|......||+++|.+|+..++. +.+.|.|.+       
T Consensus         1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~-~~~~i~i~~-------   72 (96)
T PF14470_consen    1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI-LGGKITIET-------   72 (96)
T ss_pred             CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc-cccEEEEEE-------
Confidence            46789999999997663 345779999999999999875 67788899999999999998765 356888888       


Q ss_pred             CCCCCCCCCCceeEEEeeeechHHH
Q 009822          249 GVPPLGSPDGRVRYKFASFWNRNHA  273 (524)
Q Consensus       249 ~~~~~~~~~~~~~~~f~sf~~rd~~  273 (524)
                               +..++.|.++ ..+.+
T Consensus        73 ---------~~~~~~i~~i-~k~~~   87 (96)
T PF14470_consen   73 ---------NGEKIKIDNI-QKGDV   87 (96)
T ss_pred             ---------CCEEEEEEEc-CHHHH
Confidence                     3468888887 55544

>PLN02964 phosphatidylserine decarboxylase

Probab=97.22  E-value=0.00052  Score=74.89  Aligned_cols=83  Identities=14%  Similarity=0.275  Sum_probs=68.8

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEE-EEECCeEEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAI-ITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST   90 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~-v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~~~~d~   90 (524)
                      .|.+.+++++|+    ++   ..|||.. +.++.+.++|.+.++|+||+||+...|.+... ....++.|||++.+++++
T Consensus        53 ~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~  125 (644)
T PLN02964         53 SGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT  125 (644)
T ss_pred             cCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence            577888998887    22   4688665 56788899999999999999999988887543 333799999999999999


Q ss_pred             eeEEEEEEcccC
Q 009822           91 VLGSVIVTVESE  102 (524)
Q Consensus        91 ~iG~~~i~l~~~  102 (524)
                      ++|.+.+++...
T Consensus       126 lv~~~e~~~t~f  137 (644)
T PLN02964        126 LVGYCELDLFDF  137 (644)
T ss_pred             hhhheeecHhhc
Confidence            999999988766

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=97.20  E-value=0.00048  Score=57.95  Aligned_cols=68  Identities=22%  Similarity=0.354  Sum_probs=49.9

Q ss_pred             eEEeeeeeeee-ccceeeEEEeecceEEEEec---------------cCcceeEEEEeccccccccccccceecCcEEEE
Q 009822          177 VELSYSCVIER-SFLYHGRMYVSAWHICFHSN---------------AFSRQMKVIIPIGDIDEIQRSQHAFINPAITII  240 (524)
Q Consensus       177 l~~~~~c~l~~-~~~~~Gr~yit~~~~cF~s~---------------~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~  240 (524)
                      ++-++.|.+.. ....+|++.|++++++|..+               .-.......+|+++|..|.+..-.+-..||+|-
T Consensus         2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEiF   81 (106)
T PF14844_consen    2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEIF   81 (106)
T ss_dssp             -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEEE
Confidence            45688998866 56689999999999999976               333456778999999999976655434599999


Q ss_pred             EecC
Q 009822          241 LRMG  244 (524)
Q Consensus       241 ~~~~  244 (524)
                      +.+|
T Consensus        82 ~~dg   85 (106)
T PF14844_consen   82 FSDG   85 (106)
T ss_dssp             ETTS
T ss_pred             EcCC
Confidence            9653

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=96.96  E-value=0.085  Score=47.78  Aligned_cols=149  Identities=13%  Similarity=0.104  Sum_probs=103.6

Q ss_pred             eeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeecc-C-----CCCCceeeEeEEE
Q 009822          341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK-S-----PIYPRDTAMTESQ  414 (524)
Q Consensus       341 ~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~-~-----~~gpk~~~~~~~Q  414 (524)
                      ..+|++|++++|.+|.+  ..|+...+...+..+.....-....+  +....+.-..|-. .     .+.+..-.+.+++
T Consensus         4 ~~~~~~~~~~v~~~~~d--~~y~~~r~~~~g~~~~~~~~~~~~~~--g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e   79 (159)
T PF10698_consen    4 SVEYPAPVERVWAAFTD--EDYWEARCAALGADNAEVESFEVDGD--GVRVTVRQTVPADKLPSAARKFVGGDLRVTRTE   79 (159)
T ss_pred             EEEcCCCHHHHHHHHcC--HHHHHHHHHHcCCCCceEEEEEEcCC--eEEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence            57899999999999876  57888888888876777766666543  3333333333331 1     2444556777777


Q ss_pred             EEEecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHH
Q 009822          415 HAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELML  494 (524)
Q Consensus       415 ~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~  494 (524)
                      +..... +..+........+    |....+.....++. ++.+|++.+.+.|+- |=.++-++||+.+.+...+.++.-.
T Consensus        80 ~w~~~~-~g~~~g~~~~~~~----G~P~~~~G~~~L~~-~~~gt~~~~~g~v~v-~VPlvGgkiE~~v~~~~~~~~~~e~  152 (159)
T PF10698_consen   80 TWTPLD-DGRRTGTFTVSIP----GAPVSISGTMRLRP-DGGGTRLTVEGEVKV-KVPLVGGKIEKAVAENLRKLLEAEQ  152 (159)
T ss_pred             EEecCC-CCeEEEEEEEEec----CceEEEEEEEEEec-CCCCEEEEEEEEEEE-EEccccHHHHHHHHHHHHHHHHHHH
Confidence            663333 3455665555555    55588999999999 556899999988865 3358999999999998888888777


Q ss_pred             HHHHHH
Q 009822          495 ETARSY  500 (524)
Q Consensus       495 ~~~~~~  500 (524)
                      +.+.+.
T Consensus       153 ~~~~~w  158 (159)
T PF10698_consen  153 EFTAEW  158 (159)
T ss_pred             HHHHhh
Confidence            766654

The function is not known.

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.0032  Score=66.50  Aligned_cols=99  Identities=17%  Similarity=0.293  Sum_probs=78.4

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEEC-------CeEEeeeeecCCCCCccccEEEEEecCC----CcEEEEEEEEc
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW   83 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-------~~~~~T~~~~~t~nP~W~e~f~f~v~~~----~~~L~v~v~d~   83 (524)
                      .++|.|+.|.+|+=. ..|.--||+.+.+-       ..++.|++..++-.|.+||+|.|-+...    .-.|.+.|-|+
T Consensus      1126 kvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred             eEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence            578999999999643 36777899999862       2344688888889999999999998642    23488999888


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~  114 (524)
                      .--..|..+|.+.++|.++  ...-..|++|..
T Consensus      1205 CFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred             eeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence            7666788999999999998  455678999964

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=96.70  E-value=0.0049  Score=65.00  Aligned_cols=119  Identities=13%  Similarity=0.135  Sum_probs=77.4

Q ss_pred             EeeeeecCCCCCccccEEEEEe-cCCCcEEEEEEEEcCCC----CCCceeEEEEEEcccCCCcccEEEE--ecC--CCCe
Q 009822           48 RFSSMVPGSRYPMWGEEFNFSV-DELPVQIIVTIYDWDII----WKSTVLGSVIVTVESEGQTGAVWYT--LDS--PSGQ  118 (524)
Q Consensus        48 ~~T~~~~~t~nP~W~e~f~f~v-~~~~~~L~v~v~d~d~~----~~d~~iG~~~i~l~~~~~~~~~w~~--L~~--~~G~  118 (524)
                      .+|+.+.+.+||.|.+.|.+.. .+.-+.|++.++|.+..    ...+|+|.+.+.+..+-........  +.+  ..|.
T Consensus        43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~  122 (529)
T KOG1327|consen   43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGS  122 (529)
T ss_pred             cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCc
Confidence            3789999999999999998874 45567799999998743    4568999999999987222222222  221  1122


Q ss_pred             eEEEEEEEeccccccccccCcccccccccccccCCCCccccccccccccccccCccc
Q 009822          119 VCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDE  175 (524)
Q Consensus       119 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~~F~lp~~e  175 (524)
                        +.|.+........+       ...+.-+...+++++++..++++|...++.-.++
T Consensus       123 --g~iti~aee~~~~~-------~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~  170 (529)
T KOG1327|consen  123 --GTITISAEEDESDN-------DVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDG  170 (529)
T ss_pred             --ccEEEEeecccccC-------ceeeeeeeeeecCcccccccCCcceEEEEecCCC
Confidence              23333333333332       1122222346789999999999999999765444

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=96.69  E-value=0.0026  Score=67.02  Aligned_cols=82  Identities=24%  Similarity=0.331  Sum_probs=66.2

Q ss_pred             EEeecCcCCCCCCCCCcEEEEEE--CC----eEEeeeeecCCCCCccccEEEEEec-----CCCcEEEEEEEEcCCCCCC
Q 009822           21 LAAKNLIGANLNGTSDPYAIITC--GS----EKRFSSMVPGSRYPMWGEEFNFSVD-----ELPVQIIVTIYDWDIIWKS   89 (524)
Q Consensus        21 i~A~~L~~~d~~g~~dpyv~v~~--~~----~~~~T~~~~~t~nP~W~e~f~f~v~-----~~~~~L~v~v~d~d~~~~d   89 (524)
                      ++|.+|..+|..+++|||..+.-  +.    ...+|++++++++|.|. .|.+...     +....+.+.+||++..+++
T Consensus       143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~  221 (529)
T KOG1327|consen  143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNGKH  221 (529)
T ss_pred             eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCCCc
Confidence            56889999999999999998863  22    23479999999999994 4555532     3457799999999999999


Q ss_pred             ceeEEEEEEcccCC
Q 009822           90 TVLGSVIVTVESEG  103 (524)
Q Consensus        90 ~~iG~~~i~l~~~~  103 (524)
                      ++||.+..++..+.
T Consensus       222 ~~ig~~~tt~~~~~  235 (529)
T KOG1327|consen  222 DLIGKFQTTLSELQ  235 (529)
T ss_pred             CceeEecccHHHhc
Confidence            99999998888773

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=96.55  E-value=0.0032  Score=49.95  Aligned_cols=93  Identities=19%  Similarity=0.215  Sum_probs=65.0

Q ss_pred             EEEEEEeecCcCCCCCCC-CCcEEEE--EEC-CeEEeeeeecCCCCCccccEEEEEec--C-CCcEEEEEEEEcCCCCCC
Q 009822           17 KLELLAAKNLIGANLNGT-SDPYAII--TCG-SEKRFSSMVPGSRYPMWGEEFNFSVD--E-LPVQIIVTIYDWDIIWKS   89 (524)
Q Consensus        17 ~V~vi~A~~L~~~d~~g~-~dpyv~v--~~~-~~~~~T~~~~~t~nP~W~e~f~f~v~--~-~~~~L~v~v~d~d~~~~d   89 (524)
                      -++++.|++|.-....|. .--|++-  .+. ....+|...+...||.|.|+|.|.+.  . ....|.|.|+.  ...+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            478899999865432222 2234432  233 33457888889999999999999864  3 34569999988  44567


Q ss_pred             ceeEEEEEEcccCC-CcccEEEE
Q 009822           90 TVLGSVIVTVESEG-QTGAVWYT  111 (524)
Q Consensus        90 ~~iG~~~i~l~~~~-~~~~~w~~  111 (524)
                      +-||.+.+.+...+ +...+|.+
T Consensus        80 e~iG~~sL~l~s~geeE~~HW~e  102 (103)
T cd08684          80 RTIGECSLSLRTLSTQETDHWLE  102 (103)
T ss_pred             ceeeEEEeecccCCHHHhhhhhc
Confidence            89999999999984 45667765

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=95.62  E-value=0.016  Score=58.64  Aligned_cols=113  Identities=11%  Similarity=0.142  Sum_probs=79.6

Q ss_pred             eEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecCCC------------cEE
Q 009822           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELP------------VQI   76 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~------------~~L   76 (524)
                      -.|.+.|+++++++......-.|-|+++.+.     .++.+|.+++.+.+|.|+|.|.+.+....            ..+
T Consensus       367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~  446 (523)
T KOG3837|consen  367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK  446 (523)
T ss_pred             hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence            3467778888887654322234678888752     34457899999999999999999986521            128


Q ss_pred             EEEEEEcCCCC-CCceeEEEEEEcccCCC--cccEEEEecC----CCCeeEEEEEEE
Q 009822           77 IVTIYDWDIIW-KSTVLGSVIVTVESEGQ--TGAVWYTLDS----PSGQVCLHIKTI  126 (524)
Q Consensus        77 ~v~v~d~d~~~-~d~~iG~~~i~l~~~~~--~~~~w~~L~~----~~G~i~~~l~~~  126 (524)
                      .|++|+...+- +|.++|.+.+.|..+..  .....++|..    -+|++.+++++.
T Consensus       447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             eEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence            99999987654 58899999999988732  2344566643    247777766644

>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain

Probab=95.35  E-value=0.089  Score=43.75  Aligned_cols=89  Identities=18%  Similarity=0.237  Sum_probs=63.8

Q ss_pred             cceEEeeeeeeee-ccceeeEEEeecceEEEEecc----C-cc---------eeEEEEeccccccccccccceecCcEEE
Q 009822          175 EFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA----F-SR---------QMKVIIPIGDIDEIQRSQHAFINPAITI  239 (524)
Q Consensus       175 e~l~~~~~c~l~~-~~~~~Gr~yit~~~~cF~s~~----~-g~---------~~~~~i~~~~i~~i~k~~~~~~~~~i~i  239 (524)
                      |+++-+..|.+.. -.-..|++-||..+|+|.-..    + +.         .....+++++|.+|.+..-.+=..|++|
T Consensus         1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEi   80 (108)
T cd01201           1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALEL   80 (108)
T ss_pred             CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEE
Confidence            4577788998865 556889999999999999521    1 11         1233799999999988765443349999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHH
Q 009822          240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR  279 (524)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~  279 (524)
                      ...+              +  .-.|.+|-+++.+.+++..
T Consensus        81 F~~d--------------~--~~~f~~F~~~~~~k~vv~~  104 (108)
T cd01201          81 FLAS--------------R--TSIFFAFPDQNAVKKVVYA  104 (108)
T ss_pred             EEeC--------------C--ceEEEEeCcHHHHHHHHhh
Confidence            9963              2  3456689888887776654

Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=94.47  E-value=0.097  Score=57.81  Aligned_cols=100  Identities=18%  Similarity=0.201  Sum_probs=71.9

Q ss_pred             CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-------CeEEeeeeec-CCCCCccc-cEEEEE-ec-CCCcEEEE
Q 009822           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVP-GSRYPMWG-EEFNFS-VD-ELPVQIIV   78 (524)
Q Consensus        10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-------~~~~~T~~~~-~t~nP~W~-e~f~f~-v~-~~~~~L~v   78 (524)
                      +--.+++.|+||+|.-|..+.    ...||.+..-       ...++|++.. ++.||+|+ +.|.|. |. ..-..|+|
T Consensus       699 gvIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRi  774 (1189)
T KOG1265|consen  699 GVIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRI  774 (1189)
T ss_pred             ceEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheee
Confidence            344678999999999997765    3489988852       2345788875 57999998 458887 32 22345999


Q ss_pred             EEEEcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822           79 TIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        79 ~v~d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~  118 (524)
                      .||+.+    ..|||+--++++.++.+. +.+.|..+.++
T Consensus       775 avyeEg----gK~ig~RIlpvd~l~~GY-rhv~LRse~Nq  809 (1189)
T KOG1265|consen  775 AVYEEG----GKFIGQRILPVDGLNAGY-RHVCLRSESNQ  809 (1189)
T ss_pred             eeeccC----CceeeeeccchhcccCcc-eeEEecCCCCC
Confidence            999975    369999999999886653 34556554433

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=94.24  E-value=0.11  Score=50.76  Aligned_cols=115  Identities=14%  Similarity=0.129  Sum_probs=77.1

Q ss_pred             CCceEEEEEEEEeecCcCCCC--CCCCCcEEEEEECCeE-EeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCC
Q 009822           11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~--~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~   87 (524)
                      ...|.|.++++.+++|+-...  .-+.+-||++..+.+. .+|.+.....--.|.|+|..++.. ...+.+-||.|+...
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~  126 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR  126 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence            457899999999999965433  4567899999887443 355555556667799999998764 566889999998766


Q ss_pred             CCceeEEEEEEcccC-CCcccEEEEecC-CCCeeEEEEEEE
Q 009822           88 KSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQVCLHIKTI  126 (524)
Q Consensus        88 ~d~~iG~~~i~l~~~-~~~~~~w~~L~~-~~G~i~~~l~~~  126 (524)
                      ++++.-..-+.+..+ ....++.+.|.- ..|++-+.+.+.
T Consensus       127 RHKLC~~g~l~~~~v~rqspd~~~Al~lePrgq~~~r~~~~  167 (442)
T KOG1452|consen  127 RHKLCHLGLLEAFVVDRQSPDRVVALYLEPRGQPPLRLPLA  167 (442)
T ss_pred             hccccccchhhhhhhhhcCCcceeeeecccCCCCceecccC
Confidence            666432223333333 344455555532 357776666543

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=94.12  E-value=0.65  Score=47.23  Aligned_cols=110  Identities=19%  Similarity=0.263  Sum_probs=82.6

Q ss_pred             EEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC--------CCcEEEEEEEEcC-CC
Q 009822           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--------LPVQIIVTIYDWD-II   86 (524)
Q Consensus        16 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~--------~~~~L~v~v~d~d-~~   86 (524)
                      +.|.|++|+|.+...   .-.-.+..++++....|..+..+-.|.|+..+..++..        ....|++++|-.| ..
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~   78 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST   78 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence            578999999997752   34456777889999999999999999999998888642        3456999999988 45


Q ss_pred             CCCceeEEEEEEcccC---C----CcccEEEEecCC-------CCeeEEEEEEEec
Q 009822           87 WKSTVLGSVIVTVESE---G----QTGAVWYTLDSP-------SGQVCLHIKTIKL  128 (524)
Q Consensus        87 ~~d~~iG~~~i~l~~~---~----~~~~~w~~L~~~-------~G~i~~~l~~~~~  128 (524)
                      +..+.||.+-++|...   .    .....||+|.+-       .-++.+.+.+...
T Consensus        79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~  134 (340)
T PF12416_consen   79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD  134 (340)
T ss_pred             CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence            5678999999998866   2    346789999763       2334455555433

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.81  E-value=0.51  Score=43.34  Aligned_cols=86  Identities=22%  Similarity=0.248  Sum_probs=57.4

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEE--CCeEE----eeeeecCCCCCccccEEEEEe--cCC--CcEEEEEEEEcC
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD   84 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~--~~~~~----~T~~~~~t~nP~W~e~f~f~v--~~~--~~~L~v~v~d~d   84 (524)
                      .+.|+|+.+.+|...  ....+-|+.+.+  +....    .|+.......+.|+|.+.|++  .+.  ...|.|+||+..
T Consensus         9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            578999999998761  234566777654  44332    454444456799999999985  343  345999999975


Q ss_pred             CCC----------------CCceeEEEEEEcccC
Q 009822           85 IIW----------------KSTVLGSVIVTVESE  102 (524)
Q Consensus        85 ~~~----------------~d~~iG~~~i~l~~~  102 (524)
                      ...                ....||.+.++|-+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            322                135788888877654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=93.73  E-value=0.87  Score=36.68  Aligned_cols=85  Identities=13%  Similarity=0.270  Sum_probs=57.0

Q ss_pred             CCCCcEEEEEECCeEE-eeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccCCCcccEEEE
Q 009822           33 GTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT  111 (524)
Q Consensus        33 g~~dpyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~  111 (524)
                      |.++..+++++++... +|.-.. ..+..|++.|.+++.. .++|.|.||-.|-   ..+.|..-+.|.+...  ....+
T Consensus         7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~~--~~~~~   79 (98)
T cd08687           7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDERH--EVQLD   79 (98)
T ss_pred             cccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhcc--cceec
Confidence            4478889999987654 444433 3578899999999975 7889999997763   2355666677776422  23344


Q ss_pred             ecCCCCeeEEEEEE
Q 009822          112 LDSPSGQVCLHIKT  125 (524)
Q Consensus       112 L~~~~G~i~~~l~~  125 (524)
                      |.+ .|.+..++.+
T Consensus        80 lep-qg~l~~ev~f   92 (98)
T cd08687          80 MEP-QLCLVAELTF   92 (98)
T ss_pred             ccc-ccEEEEEEEe
Confidence            443 5766666654

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.64  E-value=0.58  Score=42.28  Aligned_cols=84  Identities=15%  Similarity=0.213  Sum_probs=57.8

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEE--CCeEE----eeeeecCCCCCccccEEEEEec--CC--CcEEEEEEEEcC
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSVD--EL--PVQIIVTIYDWD   84 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~--~~~~~----~T~~~~~t~nP~W~e~f~f~v~--~~--~~~L~v~v~d~d   84 (524)
                      .+.|+|+.+.++...+   .++-|+.+.+  ++...    .|..+.. .++.|||...|++.  +.  ...|.|+||+..
T Consensus         9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~   84 (158)
T cd08398           9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK   84 (158)
T ss_pred             CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence            5789999999887643   4678888764  43322    3433333 57999999999863  33  456999999976


Q ss_pred             CCC----CCceeEEEEEEcccC
Q 009822           85 IIW----KSTVLGSVIVTVESE  102 (524)
Q Consensus        85 ~~~----~d~~iG~~~i~l~~~  102 (524)
                      ...    ....+|.+.++|-+.
T Consensus        85 ~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          85 GRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             cccCCCCceEEEEEEEEEEECC
Confidence            421    124699999988765

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=93.10  E-value=4.2  Score=38.36  Aligned_cols=147  Identities=12%  Similarity=0.233  Sum_probs=77.0

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEee---ccCCCCCceeeEeEEEE
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSL---CKSPIYPRDTAMTESQH  415 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~---~~~~~gpk~~~~~~~Q~  415 (524)
                      -++.++++|++++|..++.| .....++........+       -+..+..++ +.|..-   ...|+.++..-  ..++
T Consensus        51 k~~~~i~~~~~~v~~~l~~d-~~~~~~Wd~~~~~~~~-------i~~~d~~~~-i~y~~~~~~~~~~vs~RDfV--~~r~  119 (208)
T cd08868          51 RLTGVLDCPAEFLYNELVLN-VESLPSWNPTVLECKI-------IQVIDDNTD-ISYQVAAEAGGGLVSPRDFV--SLRH  119 (208)
T ss_pred             EEEEEEcCCHHHHHHHHHcC-ccccceecCcccceEE-------EEEecCCcE-EEEEEecCcCCCcccccceE--EEEE
Confidence            45778999999999988864 3222221111111111       000011222 344321   11234444321  1222


Q ss_pred             EEecCCCCeEEEEEEEeeCCCCCCCeE----EEEEEEEEEeeCC--CCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHH
Q 009822          416 AVLSPDKKIFVFETVQQAHDVPFGSYF----EIHGRWHLETIAE--NSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKE  489 (524)
Q Consensus       416 ~~~~~~~~~~vv~~~~~~~dVPygd~F----~v~~r~~i~~~~~--~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~  489 (524)
                      .... ++.++++..+..-+..|-..-|    .....|.|++.++  ++|.+...+.+...+| +-+.++.+.+.....+.
T Consensus       120 ~~~~-~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~lvN~~~~~~~~~~  197 (208)
T cd08868         120 WGIR-ENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQYLVDQALASVLLDF  197 (208)
T ss_pred             EEec-CCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-CcceeeehhhHHHHHHH
Confidence            3333 3444444444433566654443    2458899999854  6899998888888765 44555666666666665


Q ss_pred             HHHHHHHHH
Q 009822          490 VELMLETAR  498 (524)
Q Consensus       490 ~~~~~~~~~  498 (524)
                      ++.+-+.+.
T Consensus       198 ~~~Lr~~~~  206 (208)
T cd08868         198 MKHLRKRIA  206 (208)
T ss_pred             HHHHHHHHh
Confidence            555554443

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=93.07  E-value=4.4  Score=37.61  Aligned_cols=134  Identities=12%  Similarity=0.170  Sum_probs=72.4

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEe-eccCCCCCceeeEeEEEEEE
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRS-LCKSPIYPRDTAMTESQHAV  417 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~-~~~~~~gpk~~~~~~~Q~~~  417 (524)
                      -...+++++++++|+++..  .....++........+..    ..++ +   ..+.|.. ..-.|+.++..-.  ..+..
T Consensus        44 k~~~~i~~s~e~v~~vi~d--~e~~~~w~~~~~~~~vie----~~~~-~---~~i~~~~~~~p~pvs~Rdfv~--~~~~~  111 (195)
T cd08876          44 KAVAEVDASIEAFLALLRD--TESYPQWMPNCKESRVLK----RTDD-N---ERSVYTVIDLPWPVKDRDMVL--RSTTE  111 (195)
T ss_pred             EEEEEEeCCHHHHHHHHhh--hHhHHHHHhhcceEEEee----cCCC-C---cEEEEEEEecccccCCceEEE--EEEEE
Confidence            4567799999999999864  445555554433333211    1111 1   2233332 1112233443221  11222


Q ss_pred             ecCCCCeEEEEEEEeeCCCCCCC----eEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHH
Q 009822          418 LSPDKKIFVFETVQQAHDVPFGS----YFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNK  485 (524)
Q Consensus       418 ~~~~~~~~vv~~~~~~~dVPygd----~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~  485 (524)
                      ...++..++|.......++|-..    .+.....|.|++.++++|+|.....+.+..+ +.+.+|...+...
T Consensus       112 ~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~-iP~~lv~~~~~~~  182 (195)
T cd08876         112 QDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS-IPGWLANAFAKDA  182 (195)
T ss_pred             EcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC-CCHHHHHHHHHHH
Confidence            22223455555543333345332    3566788999999999999999998888543 5566655554443

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=92.91  E-value=5.7  Score=37.13  Aligned_cols=150  Identities=14%  Similarity=0.167  Sum_probs=84.6

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcce-EeccccccCCCCCcEEEEEEEeeccC-CCCCceeeEeEEEEE
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNL-VMGQWHAADEYDGQVREVAFRSLCKS-PIYPRDTAMTESQHA  416 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i-~~~~W~~~~~~~~~~R~~~y~~~~~~-~~gpk~~~~~~~Q~~  416 (524)
                      -+..+++.++.+++..++.| .....++........+ ..-     ++ +  .+-+-+...... |+.|+..-...  +.
T Consensus        48 k~~~~v~~~~~~~~~~~~~d-~~~r~~Wd~~~~~~~~ie~~-----~~-~--~~i~~~~~~~~~~p~~~RDfv~~r--~~  116 (206)
T smart00234       48 RAVGVVPMVCADLVEELMDD-LRYRPEWDKNVAKAETLEVI-----DN-G--TVIYHYVSKFVAGPVSPRDFVFVR--YW  116 (206)
T ss_pred             EEEEEEecChHHHHHHHHhc-ccchhhCchhcccEEEEEEE-----CC-C--CeEEEEEEecccCcCCCCeEEEEE--EE
Confidence            34678888998877766654 3333333322222221 111     11 1  122223333322 56665422221  11


Q ss_pred             EecCCCCeEEEEEEEeeCCCCC-CCe---EEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHH
Q 009822          417 VLSPDKKIFVFETVQQAHDVPF-GSY---FEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVEL  492 (524)
Q Consensus       417 ~~~~~~~~~vv~~~~~~~dVPy-gd~---F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~  492 (524)
                      ....++.++++..+...+.+|- ..+   ......|+|++.+++.|++.....+...+| +-+.++...+.......++.
T Consensus       117 ~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~  195 (206)
T smart00234      117 RELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKT  195 (206)
T ss_pred             EEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHH
Confidence            2233444555544555566663 232   345688999999988999999999999876 45777777666676677776


Q ss_pred             HHHHHHHH
Q 009822          493 MLETARSY  500 (524)
Q Consensus       493 ~~~~~~~~  500 (524)
                      +.+.+++.
T Consensus       196 ~~~~~~~~  203 (206)
T smart00234      196 WVATLQKH  203 (206)
T ss_pred             HHHHHHHH
Confidence            66655544

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.27  E-value=0.69  Score=41.86  Aligned_cols=70  Identities=19%  Similarity=0.270  Sum_probs=50.3

Q ss_pred             CCCCcEEEEEE--CCeEE----eeeeecCCCCCccccEEEEEec--CC--CcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009822           33 GTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSVD--EL--PVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (524)
Q Consensus        33 g~~dpyv~v~~--~~~~~----~T~~~~~t~nP~W~e~f~f~v~--~~--~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~  102 (524)
                      ..++-||.+.+  ++...    .|....-+..+.|||...|++.  +.  ...|.|+|||.+..++...+|.+.++|-..
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            45778888765  33322    4555554567889999999864  33  455999999987655677999999998765

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.98  E-value=1.3  Score=39.90  Aligned_cols=87  Identities=21%  Similarity=0.265  Sum_probs=56.9

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEE--CCeEE----eeeeecCCCCCccccEEEEEe--cCC--CcEEEEEEEEcC
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD   84 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~--~~~~~----~T~~~~~t~nP~W~e~f~f~v--~~~--~~~L~v~v~d~d   84 (524)
                      .++|.+....++...+ ....+-|+.+.+  ++...    .|.......++.|||...|++  .+.  ...|.|+||+.+
T Consensus         9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            4667777777765421 234566676654  33321    233333336799999999985  333  455999999987


Q ss_pred             CCC--CCceeEEEEEEcccC
Q 009822           85 IIW--KSTVLGSVIVTVESE  102 (524)
Q Consensus        85 ~~~--~d~~iG~~~i~l~~~  102 (524)
                      ..+  ++..||.+.++|-+.
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             cCCCCcceEEEEEeEEeEcc
Confidence            544  457899999998875

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=91.93  E-value=5.4  Score=34.98  Aligned_cols=117  Identities=18%  Similarity=0.251  Sum_probs=71.6

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeE---Eeeeee-cCCCCCccccEEEEEec----C-----CCcEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK---RFSSMV-PGSRYPMWGEEFNFSVD----E-----LPVQII   77 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~~T~~~-~~t~nP~W~e~f~f~v~----~-----~~~~L~   77 (524)
                      .....+.+++.+..+++.    .....|+....+...   ..|... ...-.-.|++.|.+.+.    .     .+..+.
T Consensus         4 ~~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~   79 (143)
T PF10358_consen    4 AVKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK   79 (143)
T ss_pred             eeeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence            345678899999998876    234455555555443   344433 23455789999988752    1     123488


Q ss_pred             EEEEEcCCCCCCceeEEEEEEcccC-C---CcccEEEEecCC-CCeeEEEEEEEecccc
Q 009822           78 VTIYDWDIIWKSTVLGSVIVTVESE-G---QTGAVWYTLDSP-SGQVCLHIKTIKLPVN  131 (524)
Q Consensus        78 v~v~d~d~~~~d~~iG~~~i~l~~~-~---~~~~~w~~L~~~-~G~i~~~l~~~~~~~~  131 (524)
                      |.|+....-++...+|.+.|+|++. .   .....-++|... .....+.+.+....+.
T Consensus        80 ~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~  138 (143)
T PF10358_consen   80 FSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELR  138 (143)
T ss_pred             EEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECc
Confidence            9998875333336899999999987 2   233455666553 4444455544444433

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=91.88  E-value=4.3  Score=38.78  Aligned_cols=143  Identities=11%  Similarity=0.224  Sum_probs=74.5

Q ss_pred             eeeEE-ecCHHHHHHHHcCCCCchHHHHHHHcCC-cceEeccccccCCCCCcEEEEEEE-eeccCCCCCceeeEeEEEEE
Q 009822          340 YNDVF-PCTAEQFFTLLFSDDSKFTNEYRAARKD-SNLVMGQWHAADEYDGQVREVAFR-SLCKSPIYPRDTAMTESQHA  416 (524)
Q Consensus       340 ~~~~~-~~s~~~lf~~lf~d~s~f~~~~~~~~~~-~~i~~~~W~~~~~~~~~~R~~~y~-~~~~~~~gpk~~~~~~~Q~~  416 (524)
                      ...++ ++|++.+|+++.+  ..+..++-..... ..+.  ...  ++    . .+.|. ...-.|+.++.--..  ...
T Consensus        51 ~~~~~~~~s~e~~~~~l~D--~~~r~~Wd~~~~e~~~ie--~~d--~~----~-~i~y~~~~~P~pvs~RDfV~~--r~~  117 (222)
T cd08871          51 VSAIFPDVPAETLYDVLHD--PEYRKTWDSNMIESFDIC--QLN--PN----N-DIGYYSAKCPKPLKNRDFVNL--RSW  117 (222)
T ss_pred             EEEEeCCCCHHHHHHHHHC--hhhhhhhhhhhceeEEEE--EcC--CC----C-EEEEEEeECCCCCCCCeEEEE--EEE
Confidence            34556 6899999998864  3333333222221 1222  111  11    1 22332 211134666542221  122


Q ss_pred             EecCCCCeEEEEEEEeeCCCCCCCeE----EEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHH
Q 009822          417 VLSPDKKIFVFETVQQAHDVPFGSYF----EIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVEL  492 (524)
Q Consensus       417 ~~~~~~~~~vv~~~~~~~dVPygd~F----~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~  492 (524)
                      ... ++.++++..+...+++|-..-+    .....|+|++.++++|++...+.+...++ +-+.+|...+.......++.
T Consensus       118 ~~~-~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP~~lvN~~~~~~~~~~l~~  195 (222)
T cd08871         118 LEF-GGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LPKWVVNKATTKLAPKVMKK  195 (222)
T ss_pred             EeC-CCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cCHHHHHHHHHHHhHHHHHH
Confidence            222 3556667777667788866542    23456899999888999999999888764 23333444333333333333


Q ss_pred             HHHHH
Q 009822          493 MLETA  497 (524)
Q Consensus       493 ~~~~~  497 (524)
                      +-+.+
T Consensus       196 l~k~~  200 (222)
T cd08871         196 LHKAA  200 (222)
T ss_pred             HHHHH
Confidence            33333

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []

Probab=91.15  E-value=2.9  Score=39.08  Aligned_cols=146  Identities=13%  Similarity=0.217  Sum_probs=83.5

Q ss_pred             eeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEE-eeccC--CCCCceeeEeEEEEE
Q 009822          340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFR-SLCKS--PIYPRDTAMTESQHA  416 (524)
Q Consensus       340 ~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~-~~~~~--~~gpk~~~~~~~Q~~  416 (524)
                      +..+++.++.+++..++.+..    .+......    ..--+..++ +   ..+.|. .....  |+.|+..-+..  ..
T Consensus        50 ~~~~v~~~~~~~~~~~~~~~~----~Wd~~~~~----~~~le~~~~-~---~~i~~~~~~~~~~~p~~~RDfv~~~--~~  115 (206)
T PF01852_consen   50 AEGVVPASPEQVVEDLLDDRE----QWDKMCVE----AEVLEQIDE-D---TDIVYFVMKSPWPGPVSPRDFVFLR--SW  115 (206)
T ss_dssp             EEEEESSCHHHHHHHHHCGGG----HHSTTEEE----EEEEEEEET-T---EEEEEEEEE-CTTTTSSEEEEEEEE--EE
T ss_pred             EEEEEcCChHHHHHHHHhhHh----hcccchhh----heeeeecCC-C---CeEEEEEecccCCCCCCCcEEEEEE--EE
Confidence            467889999999999988533    22111111    111111111 1   223332 22222  55555322222  22


Q ss_pred             EecCCCCeEEEEEEEeeCCCCC--CCeEEE---EEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHH
Q 009822          417 VLSPDKKIFVFETVQQAHDVPF--GSYFEI---HGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVE  491 (524)
Q Consensus       417 ~~~~~~~~~vv~~~~~~~dVPy--gd~F~v---~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~  491 (524)
                      ....++.++++..+...+..|-  .++-++   ...|+|++.+++.|++.....++...|.. +.++..-+...+.+.++
T Consensus       116 ~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP-~~~~n~~~~~~~~~~~~  194 (206)
T PF01852_consen  116 RKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIP-SWLVNMVVKSQPPNFLK  194 (206)
T ss_dssp             EECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSH-HHHHHHHHHHHHHHHHH
T ss_pred             EEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCCh-HHHHHHHHHHhHHHHHH
Confidence            2245666777777777788774  455443   36799999999999999999998877542 44444445556666666


Q ss_pred             HHHHHHHHH
Q 009822          492 LMLETARSY  500 (524)
Q Consensus       492 ~~~~~~~~~  500 (524)
                      .+.+.++++
T Consensus       195 ~~~~~~~~~  203 (206)
T PF01852_consen  195 NLRKALKKQ  203 (206)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            666655543

StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=90.95  E-value=5.8  Score=37.56  Aligned_cols=146  Identities=10%  Similarity=0.076  Sum_probs=79.1

Q ss_pred             eeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccC---CCCCceeeEeEEEEE
Q 009822          340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKS---PIYPRDTAMTESQHA  416 (524)
Q Consensus       340 ~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~---~~gpk~~~~~~~Q~~  416 (524)
                      ++.++++|+++++..+|.|-.. ..+.       +-.+..-......+..+. +.|..-...   ++.++..-.  .+..
T Consensus        53 ~e~~i~~~~~~l~~~l~~d~e~-~~~W-------~~~~~~~~vl~~id~~~~-i~y~~~~p~p~~~vs~RD~V~--~~~~  121 (209)
T cd08905          53 LEVVVDQPLDNLYSELVDRMEQ-MGEW-------NPNVKEVKILQRIGKDTL-ITHEVAAETAGNVVGPRDFVS--VRCA  121 (209)
T ss_pred             EEEEecCCHHHHHHHHHhchhh-hcee-------cccchHHHHHhhcCCCce-EEEEEeccCCCCccCccceEE--EEEE
Confidence            6889999999999888875211 1111       101111111111111122 333321111   255554222  2233


Q ss_pred             EecCCCCeEEEEEEEeeCCCCCCCeE----EEEEEEEEEeeCC--CCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHH
Q 009822          417 VLSPDKKIFVFETVQQAHDVPFGSYF----EIHGRWHLETIAE--NSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEV  490 (524)
Q Consensus       417 ~~~~~~~~~vv~~~~~~~dVPygd~F----~v~~r~~i~~~~~--~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~  490 (524)
                      ... ++.++++......+..|-..-|    ...+.|.|++.++  ++|++...+.+...++ +-+.++.+...+...+.+
T Consensus       122 ~~~-~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~~lvN~~~~~~~~~~~  199 (209)
T cd08905         122 KRR-GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFA  199 (209)
T ss_pred             EEc-CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCHHHHHHHhHHhHHHHH
Confidence            333 3455666666555666543333    3668899999965  7899999988888665 556666666666666666


Q ss_pred             HHHHHHHH
Q 009822          491 ELMLETAR  498 (524)
Q Consensus       491 ~~~~~~~~  498 (524)
                      +.+-+.+.
T Consensus       200 ~~Lr~~~~  207 (209)
T cd08905         200 NHLRQRMA  207 (209)
T ss_pred             HHHHHHHh
Confidence            55555443

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.99  E-value=1.8  Score=39.62  Aligned_cols=90  Identities=16%  Similarity=0.159  Sum_probs=61.2

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEE--CCeEE----eeeeec----CCCCCccccEEEEEec--CC--CcEEEE
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVP----GSRYPMWGEEFNFSVD--EL--PVQIIV   78 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~--~~~~~----~T~~~~----~t~nP~W~e~f~f~v~--~~--~~~L~v   78 (524)
                      ...+.|+|..+.+++........+-|+.+.+  +.+..    .|+...    -...+.|||...|++.  +.  ...|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            3567899999999987664456788888765  43322    333221    1235779999999863  33  455999


Q ss_pred             EEEEcCCCC---------CCceeEEEEEEcccC
Q 009822           79 TIYDWDIIW---------KSTVLGSVIVTVESE  102 (524)
Q Consensus        79 ~v~d~d~~~---------~d~~iG~~~i~l~~~  102 (524)
                      +||+....+         .+..||.+.++|-+.
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999976543         346899999888765

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=89.92  E-value=6.1  Score=35.42  Aligned_cols=92  Identities=18%  Similarity=0.194  Sum_probs=64.5

Q ss_pred             CCceEEEEEEEEeecCcCCCC--CCCCCcEEE--EEECCeEEeeeeecCCCCCccccEEEEEecCC--------------
Q 009822           11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAI--ITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL--------------   72 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~--~g~~dpyv~--v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~--------------   72 (524)
                      +...-|+++|..++-...--.  .+..+.-..  +.+++++++|+.+..+.+|.++|.|.|++...              
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            556778899998864432211  134444444  44578999999999999999999999998532              


Q ss_pred             CcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009822           73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (524)
Q Consensus        73 ~~~L~v~v~d~d~~~~d~~iG~~~i~l~~~  102 (524)
                      ...+.+.|---|..+...++|.-.++...+
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~v  115 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKV  115 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHH
Confidence            234777777767666667888877777665

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=89.22  E-value=8.9  Score=35.00  Aligned_cols=122  Identities=14%  Similarity=0.189  Sum_probs=66.4

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEe
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  418 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  418 (524)
                      -...++++|+++++++++..  .....+........+     -..-+.+.......|..|  .|+.|+..-+...  ...
T Consensus        42 k~~~~i~~~~~~v~~~l~d~--~~~~~w~~~~~~~~v-----l~~~~~~~~i~~~~~~~p--~p~~~Rdfv~~~~--~~~  110 (193)
T cd00177          42 KAEGVIPASPEQVFELLMDI--DLRKKWDKNFEEFEV-----IEEIDEHTDIIYYKTKPP--WPVSPRDFVYLRR--RRK  110 (193)
T ss_pred             EEEEEECCCHHHHHHHHhCC--chhhchhhcceEEEE-----EEEeCCCeEEEEEEeeCC--CccCCccEEEEEE--EEE
Confidence            45788999999999999862  222222111111111     111110111111223333  3466664333222  222


Q ss_pred             cCCCCeEEEEEEEeeCCCCCC-CeEEEEE---EEEEEeeCCCCeEEEEEEEEEEeee
Q 009822          419 SPDKKIFVFETVQQAHDVPFG-SYFEIHG---RWHLETIAENSSTIDIKVGAHFKKW  471 (524)
Q Consensus       419 ~~~~~~~vv~~~~~~~dVPyg-d~F~v~~---r~~i~~~~~~~c~l~v~~~V~f~K~  471 (524)
                      ..++.++++..+...+.+|-. ++-+...   -|+|++.++++|++...+.+....+
T Consensus       111 ~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~  167 (193)
T cd00177         111 LDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGS  167 (193)
T ss_pred             cCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCC
Confidence            224566666665554446654 5445444   4999999889999999999988765

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=88.95  E-value=14  Score=31.76  Aligned_cols=138  Identities=9%  Similarity=0.017  Sum_probs=71.5

Q ss_pred             eeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEecC
Q 009822          341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP  420 (524)
Q Consensus       341 ~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~  420 (524)
                      ..++++|++++|+++-+  ..-+.++.-.....+     +  ..+ +.  ..+.+...    ++|........=++....
T Consensus         6 ~~~i~a~~e~v~~~l~D--~~~~~~w~p~~~~~~-----~--~~~-~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~   69 (144)
T cd05018           6 EFRIPAPPEEVWAALND--PEVLARCIPGCESLE-----K--IGP-NE--YEATVKLK----VGPVKGTFKGKVELSDLD   69 (144)
T ss_pred             EEEecCCHHHHHHHhcC--HHHHHhhccchhhcc-----c--cCC-Ce--EEEEEEEE----EccEEEEEEEEEEEEecC
Confidence            56799999999998854  333333332111111     1  111 11  11222211    244322222111222222


Q ss_pred             CCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHHHHH
Q 009822          421 DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSY  500 (524)
Q Consensus       421 ~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~~  500 (524)
                      .+..+++....    .+-+.......+|.|++. +++|+|.....+.+..  +++.+...-.....++...+.++.+++.
T Consensus        70 ~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~  142 (144)
T cd05018          70 PPESYTITGEG----KGGAGFVKGTARVTLEPD-GGGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASK  142 (144)
T ss_pred             CCcEEEEEEEE----cCCCceEEEEEEEEEEec-CCcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            33456665432    111456788999999998 6789999999988754  3444444444445555556666655554


Q ss_pred             H
Q 009822          501 I  501 (524)
Q Consensus       501 l  501 (524)
                      +
T Consensus       143 ~  143 (144)
T cd05018         143 I  143 (144)
T ss_pred             h
Confidence            3

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=88.82  E-value=11  Score=35.71  Aligned_cols=151  Identities=10%  Similarity=0.112  Sum_probs=83.9

Q ss_pred             eeeeeEE-ecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEE
Q 009822          338 GIYNDVF-PCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA  416 (524)
Q Consensus       338 ~~~~~~~-~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~  416 (524)
                      .....+| ++|++.|++++..  ..+..+.........+.    +..++  ...+.+-|....--|+.++..-..  .+.
T Consensus        52 ~k~~~~~~~~s~~~~~~~l~D--~~~r~~Wd~~~~~~~~l----e~~~~--~~~~i~y~~~~~P~P~s~RD~V~~--r~~  121 (209)
T cd08870          52 YLVRGVFEDCTPELLRDFYWD--DEYRKKWDETVIEHETL----EEDEK--SGTEIVRWVKKFPFPLSDREYVIA--RRL  121 (209)
T ss_pred             EEEEEEEcCCCHHHHHHHHcC--hhhHhhhhhheeeEEEE----EecCC--CCcEEEEEEEECCCcCCCceEEEE--EEE
Confidence            3456778 6799999999976  34444433332222221    11111  012333333333235666643222  222


Q ss_pred             EecCCCCeEEEEEEEeeCCCCCCCeEE---EEEEEEEEee--CCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHH
Q 009822          417 VLSPDKKIFVFETVQQAHDVPFGSYFE---IHGRWHLETI--AENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVE  491 (524)
Q Consensus       417 ~~~~~~~~~vv~~~~~~~dVPygd~F~---v~~r~~i~~~--~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~  491 (524)
                      ....++.++++.....-+.+|-.+.-+   ...+|+|++.  ++++|++.+.+...= +..+-+.++...+..+....++
T Consensus       122 ~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~  200 (209)
T cd08870         122 WESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLK  200 (209)
T ss_pred             EEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHH
Confidence            333245555555555556788653322   4678999998  777888888777753 4445666666666777666666


Q ss_pred             HHHHHHHH
Q 009822          492 LMLETARS  499 (524)
Q Consensus       492 ~~~~~~~~  499 (524)
                      .+-+.+.+
T Consensus       201 ~l~~a~~~  208 (209)
T cd08870         201 KLENALRK  208 (209)
T ss_pred             HHHHHHhc
Confidence            66655543

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=87.74  E-value=20  Score=33.91  Aligned_cols=147  Identities=12%  Similarity=0.081  Sum_probs=77.2

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEe--e-ccCCCCCceeeEeEEEE
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRS--L-CKSPIYPRDTAMTESQH  415 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~--~-~~~~~gpk~~~~~~~Q~  415 (524)
                      -.+.++++|++.||..+|.|-. ..       ..++-.+..=..-...+...+ +.|..  | ...|+.++.--  ....
T Consensus        52 k~~~~v~~~~~~l~~~ll~D~~-~~-------~~W~~~~~~~~vi~~~~~~~~-i~Y~v~~p~~~~pv~~RDfV--~~r~  120 (209)
T cd08906          52 ILKAFMQCPAELVYQEVILQPE-KM-------VLWNKTVSACQVLQRVDDNTL-VSYDVAAGAAGGVVSPRDFV--NVRR  120 (209)
T ss_pred             EEEEEEcCCHHHHHHHHHhChh-hc-------cccCccchhhhheeeccCCcE-EEEEEccccccCCCCCCceE--EEEE
Confidence            5688899999999987766422 11       111111111111011011122 34532  2 11234444322  1122


Q ss_pred             EEecCCCCeEEEEEEEeeCCCCCCCe-EEEE---EEEEEEe--eCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHH
Q 009822          416 AVLSPDKKIFVFETVQQAHDVPFGSY-FEIH---GRWHLET--IAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKE  489 (524)
Q Consensus       416 ~~~~~~~~~~vv~~~~~~~dVPygd~-F~v~---~r~~i~~--~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~  489 (524)
                      .... ++.++.+..++..+.+|=..- -+++   +.|.+..  .++++|++...+.+...++ +=+.+|.+...+...+.
T Consensus       121 ~~~~-~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP~~lvN~~~~~~~~~~  198 (209)
T cd08906         121 IERR-RDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LPRYLIHQSLAATMFEF  198 (209)
T ss_pred             EEec-CCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CCHHHHHHHHHHHHHHH
Confidence            3333 334566666666566664443 3344   4455665  4677899988888887664 56777777777776666


Q ss_pred             HHHHHHHHH
Q 009822          490 VELMLETAR  498 (524)
Q Consensus       490 ~~~~~~~~~  498 (524)
                      ++.+-+.+.
T Consensus       199 ~~~LR~~~~  207 (209)
T cd08906         199 ASHLRQRIR  207 (209)
T ss_pred             HHHHHHHHh
Confidence            666655554

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=87.04  E-value=20  Score=31.37  Aligned_cols=136  Identities=9%  Similarity=0.062  Sum_probs=69.3

Q ss_pred             eeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCC--CCcEEEEEEEeeccCCCCCceeeEeEEEEEEe
Q 009822          341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEY--DGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  418 (524)
Q Consensus       341 ~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~--~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  418 (524)
                      +.++++|++.+|.+|-+  ..-+.              .|.+.-+.  ....+  +|..-++..+||-.....-.-++..
T Consensus         4 ~~~v~a~pe~vw~~l~D--~~~~~--------------~~~pg~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~   65 (146)
T cd07823           4 EFTVPAPPDRVWALLLD--IERVA--------------PCLPGASLTEVEGDD--EYKGTVKVKLGPISASFKGTARLLE   65 (146)
T ss_pred             eEEecCCHHHHHHHhcC--HHHHH--------------hcCCCceeccccCCC--eEEEEEEEEEccEEEEEEEEEEEEe
Confidence            35689999999998843  22222              33331100  00012  2222222234444333322212332


Q ss_pred             cC-CCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEee--eceeeeeeeccHHHHHHHHHHHHHH
Q 009822          419 SP-DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKK--WCVIQFKIKTGAVNKYKKEVELMLE  495 (524)
Q Consensus       419 ~~-~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K--~t~~K~~Ie~~~~~~~~~~~~~~~~  495 (524)
                      .. ....+.+.-  .-.+.+-+....+...|.++. .+++|+|.+...+.+..  ..+++.+|.+    ..++.++++++
T Consensus        66 ~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~----~~~~~~~~~~~  138 (146)
T cd07823          66 DDEAARRAVLEA--TGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGKLAQFGRGGIGD----VAGRLLAQFAA  138 (146)
T ss_pred             ccCCCcEEEEEE--EEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeEhHHhChhHHHH----HHHHHHHHHHH
Confidence            22 334555432  223345455668889999998 55689999999998765  3344444444    33444555555


Q ss_pred             HHHHHH
Q 009822          496 TARSYI  501 (524)
Q Consensus       496 ~~~~~l  501 (524)
                      .+++.+
T Consensus       139 ~l~~~~  144 (146)
T cd07823         139 NLEARL  144 (146)
T ss_pred             HHHHHh
Confidence            554443

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=86.96  E-value=18  Score=30.74  Aligned_cols=135  Identities=11%  Similarity=0.066  Sum_probs=65.8

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEe
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  418 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  418 (524)
                      ....++++|++++|+++-.-  .-+..+........+...++    . .+..|.+.+.      .| .  .  ..+++..
T Consensus         4 ~~~~~i~a~~~~V~~~l~d~--~~~~~w~~~~~~~~~~~~~~----~-~g~~~~~~~~------~g-~--~--~~~~i~~   65 (140)
T cd07821           4 TVSVTIDAPADKVWALLSDF--GGLHKWHPAVASCELEGGGP----G-VGAVRTVTLK------DG-G--T--VRERLLA   65 (140)
T ss_pred             EEEEEECCCHHHHHHHHhCc--CchhhhccCcceEEeecCCC----C-CCeEEEEEeC------CC-C--E--EEEEehh
Confidence            45678999999999999753  22233332222222211111    1 2334433332      22 1  1  1233333


Q ss_pred             cCCC-CeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHH
Q 009822          419 SPDK-KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETA  497 (524)
Q Consensus       419 ~~~~-~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~  497 (524)
                      ..+. ..+.+....  .+.|+.   .....|.|+..++++|+|.......-...     ....-....+.+.++..++.+
T Consensus        66 ~~~~~~~i~~~~~~--~~~~~~---~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~L  135 (140)
T cd07821          66 LDDAERRYSYRIVE--GPLPVK---NYVATIRVTPEGDGGTRVTWTAEFDPPEG-----LTDELARAFLTGVYRAGLAAL  135 (140)
T ss_pred             cCccCCEEEEEecC--CCCCcc---cceEEEEEEECCCCccEEEEEEEEecCCC-----cchHHHHHHHHHHHHHHHHHH
Confidence            2222 455554332  124432   45788999999887888776665443322     222222334444455555555


Q ss_pred             HHHH
Q 009822          498 RSYI  501 (524)
Q Consensus       498 ~~~l  501 (524)
                      ++++
T Consensus       136 ~~~~  139 (140)
T cd07821         136 KAAL  139 (140)
T ss_pred             HHhh
Confidence            5443

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes

Probab=86.77  E-value=1.2  Score=35.96  Aligned_cols=50  Identities=20%  Similarity=0.411  Sum_probs=34.2

Q ss_pred             eeeEEEeecceEEEEeccCcceeEEEEeccccccccccccceecCcEEEEE
Q 009822          191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIIL  241 (524)
Q Consensus       191 ~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~  241 (524)
                      -.|++|+|.++|||.-..-.....+.||+++|..++...+.+ ..+-+|+.
T Consensus        36 q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~-~sSpKI~l   85 (89)
T PF11605_consen   36 QNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL-KSSPKIIL   85 (89)
T ss_dssp             SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT-SSS-EEEE
T ss_pred             cCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc-CCCCeEEE
Confidence            479999999999998654333447899999999996655543 33444443

The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=86.60  E-value=23  Score=31.62  Aligned_cols=142  Identities=12%  Similarity=0.120  Sum_probs=83.2

Q ss_pred             eeeeeEEecCHHHHHHHHcCCCCchHHHHH-HHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEE
Q 009822          338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA  416 (524)
Q Consensus       338 ~~~~~~~~~s~~~lf~~lf~d~s~f~~~~~-~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~  416 (524)
                      ...+.+.++|+++||+++.. ...++.+.. ...+.-++..++|..    ++..|.++|..     -|| .  -..+|++
T Consensus         6 ~~~E~~~~~~a~k~~ka~~~-~~~llpki~P~~i~sve~~eGdgg~----gGSIk~~~f~~-----~~~-~--~~~Kekv   72 (151)
T PF00407_consen    6 LEVEVEVKVSADKLWKAFKS-SPHLLPKILPHVIKSVEVVEGDGGP----GGSIKKWTFGP-----GGP-F--KYVKEKV   72 (151)
T ss_dssp             EEEEEEESS-HHHHHHHHTT-HHHHHHHHSTTTEEEEEEEESSSST----TT-EEEEEEET-----TSS-E--EEEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhc-CccchhhhChhhceeEEEEccCCCC----CCeEEEEEecC-----CCC-c--ceeEEEE
Confidence            34577889999999999876 445555554 445666677788865    35789999884     233 2  2335677


Q ss_pred             EecCCC-CeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeecc-HHHHHHHHHHHHH
Q 009822          417 VLSPDK-KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTG-AVNKYKKEVELML  494 (524)
Q Consensus       417 ~~~~~~-~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~-~~~~~~~~~~~~~  494 (524)
                      ...++. ..+..  +.---| +.+++..-.....+.+.++++|.++..  ++|.+-      -+.. .-+...+.+..++
T Consensus        73 e~~D~~~~~~~y--~viEGd-~l~~~~~~~~~~~~~~~~~g~~v~k~t--~~Ye~~------~~~~~~p~~~~~~~~~~~  141 (151)
T PF00407_consen   73 EAIDEENKTITY--TVIEGD-VLGDYKSFKSTIQKIPKGDGGCVVKWT--IEYEKK------GEDVPPPEKYLDFAVGMF  141 (151)
T ss_dssp             EEEETTTTEEEE--EEEEET-TGTTTEEEEEEEEEEEETTSCEEEEEE--EEEEES------STSCHHHHHHHHHHHHHH
T ss_pred             EeecCCCcEEEE--EEEecc-ccccEEEEEEEEEecCCCCCceEEEEE--EEEEec------CCCCCCcHHHHHHHHHHH
Confidence            754332 33333  222234 334444445555555666667765544  445441      1222 3556666688888


Q ss_pred             HHHHHHHhh
Q 009822          495 ETARSYIKI  503 (524)
Q Consensus       495 ~~~~~~l~~  503 (524)
                      +.++.+|-+
T Consensus       142 K~ieayLla  150 (151)
T PF00407_consen  142 KAIEAYLLA  150 (151)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            888887754

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=86.42  E-value=7.2  Score=35.94  Aligned_cols=69  Identities=14%  Similarity=0.181  Sum_probs=41.7

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEE--CCeEE---eeeeecCCCCCccccEEEEEec--CC--CcEEEEEEEEcC
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR---FSSMVPGSRYPMWGEEFNFSVD--EL--PVQIIVTIYDWD   84 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~--~~~~~---~T~~~~~t~nP~W~e~f~f~v~--~~--~~~L~v~v~d~d   84 (524)
                      .++|+|..+..+ ..+.......||.+.+  +....   +|....-+.++.|||...|++.  +.  ...|.|+||+..
T Consensus        11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            466777777633 2222222335555543  33322   4555555667999999999853  33  456999999974

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=86.12  E-value=22  Score=33.18  Aligned_cols=120  Identities=13%  Similarity=0.187  Sum_probs=64.1

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEe
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  418 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  418 (524)
                      -.+.+++.++++++.+++..           ++.+|-.+..++.-+..+....-+-|..+.-.|+.++..-.... ....
T Consensus        47 K~~~~v~a~~~~v~~~l~d~-----------r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~-~~~~  114 (197)
T cd08869          47 RASTEVEAPPEEVLQRILRE-----------RHLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRT-WRTD  114 (197)
T ss_pred             EEEEEeCCCHHHHHHHHHHH-----------HhccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEE-EEec
Confidence            35788999999999888632           23333333233221111111222334433323444443221111 1222


Q ss_pred             cCCCCeEEEEEEEee-CCCCCCC---eEEEEEEEEEEeeCCCCeEEEEEEEEEEeee
Q 009822          419 SPDKKIFVFETVQQA-HDVPFGS---YFEIHGRWHLETIAENSSTIDIKVGAHFKKW  471 (524)
Q Consensus       419 ~~~~~~~vv~~~~~~-~dVPygd---~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~  471 (524)
                      ..++.+++...+..- ..+|- +   .+...+.|.|++.++++|+|...+++...++
T Consensus       115 ~~~g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~  170 (197)
T cd08869         115 LPKGACVLVETSVEHTEPVPL-GGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGR  170 (197)
T ss_pred             CCCCcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCC
Confidence            334444444333322 25554 4   3556688999999989999999999998774

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=85.11  E-value=8.6  Score=33.87  Aligned_cols=54  Identities=30%  Similarity=0.367  Sum_probs=39.3

Q ss_pred             eeeeecCC-CCCccccEEEEEec--C--CCcEEEEEEEEcCCCCCC----ceeEEEEEEcccC
Q 009822           49 FSSMVPGS-RYPMWGEEFNFSVD--E--LPVQIIVTIYDWDIIWKS----TVLGSVIVTVESE  102 (524)
Q Consensus        49 ~T~~~~~t-~nP~W~e~f~f~v~--~--~~~~L~v~v~d~d~~~~d----~~iG~~~i~l~~~  102 (524)
                      .|....-+ ..+.|+|.+.|++.  +  ....|.|+||..+.....    ..||.+.++|-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            45555555 78999999999863  3  345699999998765555    6899999998876

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins

Probab=84.19  E-value=22  Score=33.58  Aligned_cols=143  Identities=10%  Similarity=0.119  Sum_probs=74.4

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeec---cCCCCCceeeEeEEEE
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLC---KSPIYPRDTAMTESQH  415 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~---~~~~gpk~~~~~~~Q~  415 (524)
                      -++.+++++++++|+.++...  .       +..+|-.+..-...+.-+..+ .|.|..--   ...++|+.--  ..+.
T Consensus        49 k~egvi~~~~e~v~~~l~~~e--~-------r~~Wd~~~~~~~iie~Id~~T-~I~~~~~~~~~~~~vspRDfV--~vr~  116 (204)
T cd08904          49 RVEGIIPESPAKLIQFMYQPE--H-------RIKWDKSLQVYKMLQRIDSDT-FICHTITQSFAMGSISPRDFV--DLVH  116 (204)
T ss_pred             EEEEEecCCHHHHHHHHhccc--h-------hhhhcccccceeeEEEeCCCc-EEEEEecccccCCcccCceEE--EEEE
Confidence            468899999999999987521  1       121121111111110001111 24443221   1126676422  2222


Q ss_pred             EEecCCCCeEEEEEEEeeCCCC-CCCe---EEEEEEEEEEeeCC--CCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHH
Q 009822          416 AVLSPDKKIFVFETVQQAHDVP-FGSY---FEIHGRWHLETIAE--NSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKE  489 (524)
Q Consensus       416 ~~~~~~~~~~vv~~~~~~~dVP-ygd~---F~v~~r~~i~~~~~--~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~  489 (524)
                      .....++.+++...++.-+..| =.++   +..-+-|++.+..+  +.|++.....+...+| +-+++|++.--..+.+.
T Consensus       117 ~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~-lP~~vv~~~~~~~~~~f  195 (204)
T cd08904         117 IKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN-LSRSVIEKTMPTNLVNL  195 (204)
T ss_pred             EEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC-CCHHHHHHHhHHHHHHH
Confidence            2222344445545554445544 2333   34446799999865  4799999988777654 66777776555555555


Q ss_pred             HHHHH
Q 009822          490 VELML  494 (524)
Q Consensus       490 ~~~~~  494 (524)
                      +..+-
T Consensus       196 ~~~~~  200 (204)
T cd08904         196 ILDAK  200 (204)
T ss_pred             HHHHH
Confidence            54443

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.

>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity

Probab=81.90  E-value=6.7  Score=30.92  Aligned_cols=51  Identities=24%  Similarity=0.420  Sum_probs=37.1

Q ss_pred             eeeEEEeecce--EEEEeccCcceeEEEEeccccccccccccceecC--cEEEEEec
Q 009822          191 YHGRMYVSAWH--ICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP--AITIILRM  243 (524)
Q Consensus       191 ~~Gr~yit~~~--~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~--~i~i~~~~  243 (524)
                      ..|.|||++.+  +-+--+--+-...+.||+.+|+..+-.+..  .+  -++|..+.
T Consensus        12 ~~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~--s~Kv~Lki~~~~   66 (79)
T PF08567_consen   12 KDGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEG--SPKVMLKIVLKD   66 (79)
T ss_dssp             EEEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TT--SSTEEEEEEETT
T ss_pred             CCcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCC--CcceEEEEEEec
Confidence            45999999999  888875444444899999999998877654  33  56777754

The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.

>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.85  E-value=6.5  Score=42.27  Aligned_cols=92  Identities=22%  Similarity=0.343  Sum_probs=65.8

Q ss_pred             ccccccccccCcccce-EEeeeeeeeeccceeeEEEeecceEEEEeccCcceeEEEEecccccccccccccee-cC--cE
Q 009822          162 PGPLQTIFNLLPDEFV-ELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI-NP--AI  237 (524)
Q Consensus       162 ~~~f~~~F~lp~~e~l-~~~~~c~l~~~~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~-~~--~i  237 (524)
                      +..+...|.+-++|.+ -..|-|.+.-  ...|.++||+-.|+|.+...+..-.+.+||.=|..|+|..++.- .|  .|
T Consensus        27 ~~~~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L  104 (717)
T KOG4471|consen   27 DENLQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGL  104 (717)
T ss_pred             cccccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeE
Confidence            3345666765566544 3446666653  78899999999999999877777788999999999999875532 23  77


Q ss_pred             EEEEecCCCCCCCCCCCCCCCceeEEEeeee
Q 009822          238 TIILRMGAGGHGVPPLGSPDGRVRYKFASFW  268 (524)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~  268 (524)
                      +|.+++-             ...++-|..+.
T Consensus       105 ~i~CKDm-------------r~lR~~fk~~~  122 (717)
T KOG4471|consen  105 EITCKDM-------------RNLRCAFKQEE  122 (717)
T ss_pred             EEEeccc-------------cceeeecCccc
Confidence            8887642             45566666653

>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains

Probab=81.45  E-value=17  Score=35.11  Aligned_cols=78  Identities=9%  Similarity=0.063  Sum_probs=46.4

Q ss_pred             CeEEEEEEEeeCCCCCC-CeEEEEE---------------EEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHH
Q 009822          423 KIFVFETVQQAHDVPFG-SYFEIHG---------------RWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKY  486 (524)
Q Consensus       423 ~~~vv~~~~~~~dVPyg-d~F~v~~---------------r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~  486 (524)
                      .++++..+..-+++|=. ++-++..               .|.+++ .+.+|++...+.++--+| +=.++|..-+..+.
T Consensus       136 ~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~-iP~wvvn~~~k~~~  213 (235)
T cd08872         136 TWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGW-APASVLRAVYKREY  213 (235)
T ss_pred             eEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCC-ccHHHHHHHHHhhc
Confidence            34667777677777765 5666654               244555 456888888888877554 34455555555554


Q ss_pred             HHHHHHHHHHHHHHHh
Q 009822          487 KKEVELMLETARSYIK  502 (524)
Q Consensus       487 ~~~~~~~~~~~~~~l~  502 (524)
                      -+.++.+=..+.+..|
T Consensus       214 P~~l~~~~~~~~~~~~  229 (235)
T cd08872         214 PKFLKRFTSYVQEKTK  229 (235)
T ss_pred             hHHHHHHHHHHHHhcC
Confidence            4444444444444433

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg

>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins

Probab=81.35  E-value=35  Score=32.21  Aligned_cols=142  Identities=11%  Similarity=0.099  Sum_probs=74.0

Q ss_pred             eeeEEe-cCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEe
Q 009822          340 YNDVFP-CTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  418 (524)
Q Consensus       340 ~~~~~~-~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  418 (524)
                      ...+|+ +|++.|++++..  ..+..+....... -+..     ..+ +  .+.+-+....--|+.++..-+... ....
T Consensus        53 ~~~~~~~~s~~~~~~~l~D--~~~r~~Wd~~~~~-~~~~-----~~~-~--~~i~y~~~k~PwPvs~RD~V~~r~-~~~~  120 (207)
T cd08910          53 VFGVLEDCSPSLLADVYMD--LEYRKQWDQYVKE-LYEK-----ECD-G--ETVIYWEVKYPFPLSNRDYVYIRQ-RRDL  120 (207)
T ss_pred             EEEEEcCCCHHHHHHHHhC--HHHHHHHHHHHHh-heee-----cCC-C--CEEEEEEEEcCCCCCCceEEEEEE-eccc
Confidence            367887 899999999965  4443333322221 1111     111 1  233333343334566665432222 1222


Q ss_pred             cCCCC-e-EEEEEEEeeCCCCCCCeE----EEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHH
Q 009822          419 SPDKK-I-FVFETVQQAHDVPFGSYF----EIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVEL  492 (524)
Q Consensus       419 ~~~~~-~-~vv~~~~~~~dVPygd~F----~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~  492 (524)
                      ..++. . +++.....-+.+|-.+-|    .....|+|++.++++|++...+...-.+ .+=++++..-+.++....++.
T Consensus       121 ~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG-~IP~wlvN~~~~~~~~~~l~~  199 (207)
T cd08910         121 DVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGG-MIPSWLINWAAKNGVPNFLKD  199 (207)
T ss_pred             cCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCC-cchHHHHHHHHHHhhHHHHHH
Confidence            22333 3 334444455677765544    3678899998888889999888887532 233344444444444444443


Q ss_pred             HH
Q 009822          493 ML  494 (524)
Q Consensus       493 ~~  494 (524)
                      +-
T Consensus       200 l~  201 (207)
T cd08910         200 MQ  201 (207)
T ss_pred             HH
Confidence            33

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.

>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function

Probab=80.22  E-value=5.6  Score=43.49  Aligned_cols=82  Identities=15%  Similarity=0.309  Sum_probs=59.0

Q ss_pred             eeeeeeeeccceeeEEEee----cceEEEEeccC------------cceeEEEEeccccccccccccce-----------
Q 009822          180 SYSCVIERSFLYHGRMYVS----AWHICFHSNAF------------SRQMKVIIPIGDIDEIQRSQHAF-----------  232 (524)
Q Consensus       180 ~~~c~l~~~~~~~Gr~yit----~~~~cF~s~~~------------g~~~~~~i~~~~i~~i~k~~~~~-----------  232 (524)
                      .|.|-|..+   .|.+||+    .=.|||.+...            .....+.||+.||.+++|..+..           
T Consensus       520 ~F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa~  596 (642)
T PF11696_consen  520 EFPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWAL  596 (642)
T ss_pred             eeeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeeec
Confidence            478877653   4999999    34688987511            23556999999999999987652           


Q ss_pred             ----ecCcEEEE-EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHH
Q 009822          233 ----INPAITII-LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR  279 (524)
Q Consensus       233 ----~~~~i~i~-~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~  279 (524)
                          +..++.|. ++              .| ..|.++-...||+.|+-|-.
T Consensus       597 g~kEv~DGL~I~g~~--------------~g-~~y~lTA~~~RDeLFNRLiA  633 (642)
T PF11696_consen  597 GEKEVVDGLVIVGDE--------------PG-QEYHLTAMPRRDELFNRLIA  633 (642)
T ss_pred             CCcccccceEEeccC--------------CC-CEEEEEecchHHHHHHHHHh
Confidence                12255555 43              34 58999999999999987764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	524
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		7e-08
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		3e-05
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		7e-05
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		9e-05
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		2e-04

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V + D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 138
Query: 119 VCLHI 123
           + LHI
Sbjct: 139 IRLHI 143

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQ 75
           AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F + E     +
Sbjct: 181 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRR 240
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
           + V I+DWD+  ++  +GS+   + SE Q   V  W+ L
Sbjct: 241 LSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGVDGWFKL 278

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQ 75
           AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F + E     +
Sbjct: 40  AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRR 99
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
           + V I+DWD+  ++  +GS+   + SE Q   V  W+ L
Sbjct: 100 LSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGVDGWFKL 137

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73
Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVES--EGQ 104
            + VT++D D       LG V + + S  +GQ
Sbjct: 74  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ 105

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPV 74
           +++ L++AK L  A+     DPY  +TC ++ + S++  G    P W E F F+V E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVE 100
           ++   I+D D+  +   +G   + +E
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLE 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	524
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	7e-26
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-25
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	4e-21
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	7e-18
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-17
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	6e-17
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-16
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-16
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	8e-16
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	9e-16
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	2e-15
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	8e-15
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	3e-14
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	7e-14
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-13
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	4e-10
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	3e-13
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	7e-13
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	8e-13
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	8e-13
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-09
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	1e-12
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-12
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-12
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	1e-12
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	2e-12
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	3e-12
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	4e-12
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	9e-12
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-11
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-10
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	5e-10
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-09
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	3e-09
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	4e-09
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	5e-09
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	6e-09
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	7e-09
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-08
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	8e-08
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	5e-07
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-05
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  101 bits (254), Expect = 7e-26
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELP 73
            +++ L++AK L  A+     DPY  +TC ++ + S++       P W E F F+V E  
Sbjct: 11  TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT 70

Query: 74  VQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTL---DSPSGQVCLHIK 124
            ++   I+D D+  +   +G   +    V  EG      Y +   +   G++ + + 
Sbjct: 71  TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  101 bits (252), Expect = 2e-25
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLDS------PSGQ 118
           I V + D D   KS V           LG  I+ V +      VWY LD        SG 
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 138

Query: 119 VCLHIK 124
           + LHI 
Sbjct: 139 IRLHIS 144

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 88.5 bits (220), Expect = 4e-21
 Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIK 124
            + VT++D D       LG V + + S        Y L +        G + L + 
Sbjct: 74  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 129

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 80.3 bits (198), Expect = 7e-18
 Identities = 13/116 (11%), Positives = 38/116 (32%), Gaps = 6/116 (5%)

Query: 8   PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNF 67
                   +++ +++AK            PY  +T   + + +     +  P W +    
Sbjct: 30  GSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTV 89

Query: 68  SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTV-----ESEGQTGAVWYTLDSPSGQ 118
            V  +  ++   ++    +    +LG+  + +      +  +   V  TL     +
Sbjct: 90  IVTPVS-KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK 144

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 78.3 bits (193), Expect = 1e-17
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 26/140 (18%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANL-----------NGTSDPYAIITCGSEKRF 49
           MV F G        L+K+++  A +L                    DPY  +     +  
Sbjct: 1   MVVFNG--------LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG 52

Query: 50  SSMV-PGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVES----EGQ 104
            +     +  P W +EF   V     +I + ++    I     + +  +  E       +
Sbjct: 53  QTATKQKTNSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSR 111

Query: 105 TGAVWYTLDSPSGQVCLHIK 124
               W  L+ P G+V + I 
Sbjct: 112 HFEDWIDLE-PEGKVYVIID 130

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 76.2 bits (188), Expect = 6e-17
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 12  SAYLIKLELLAAKNLI---GANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEF 65
           S++   + +L A  +      ++  T DPY  +   +       +        P+W E F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 66  NFSVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPSGQVCLH 122
            F +D     ++ +T+ D + +     LG+   TV S   G+   V +  +    ++ L 
Sbjct: 61  EFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFN-QVTEMVLE 118

Query: 123 IK 124
           + 
Sbjct: 119 MS 120

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 17/126 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT--CGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
           I+L +L AKNL   +     DP+A I      +   +  V  +  P W + ++  V +  
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK-T 65

Query: 74  VQIIVTIYDWDIIWK---STVLGSVIVTVESEGQTGA-VWYTLDSP----------SGQV 119
             I +++++   I K   +  LG V +   +  +     +  LD             GQ+
Sbjct: 66  DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQI 125

Query: 120 CLHIKT 125
            + ++T
Sbjct: 126 VVSLQT 131

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 73.9 bits (181), Expect = 8e-16
 Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 19/127 (14%)

Query: 15  LIKLELLAAKNLIGANL----------NGTSDPYAIITCGSEKRFSSMV-PGSRYPMWGE 63
            +++ +  A  L               +   DPY  ++    +   +     +  P + E
Sbjct: 30  YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89

Query: 64  EFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVES------EGQTGAVWYTLDSPSG 117
           EF  +V +    + + ++    +     + +  +  +          T   W  L+ P G
Sbjct: 90  EFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE-PEG 147

Query: 118 QVCLHIK 124
           +V + I 
Sbjct: 148 KVFVVIT 154

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 73.2 bits (180), Expect = 9e-16
 Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 15/124 (12%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++ + +A N+      G  DP   +    EK+ +  V     P+W E   F +  +P+
Sbjct: 8   MLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66

Query: 75  Q----IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS--------GQVC 120
                + + + D++ I ++ ++G+  V ++     Q+ ++ Y L S            + 
Sbjct: 67  DFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATID 126

Query: 121 LHIK 124
           L I 
Sbjct: 127 LVIG 130

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            +  AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F +   +
Sbjct: 36  VVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD 95

Query: 72  LPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              ++ V I+DWD+  ++  +GS+   +   +      W+ L S  
Sbjct: 96  KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQE 141

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 70.9 bits (174), Expect = 8e-15
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 20/130 (15%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSM------VPGSRYPMWGEEFNFS 68
           ++++ ++A   L   ++ G SDPY  +T                +  S  P W EE  F 
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80

Query: 69  VDELPVQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAV-----WYTLDSPS---- 116
           V     +++  ++D + + +   LG V V    + +E            + L   S    
Sbjct: 81  VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSR 140

Query: 117 --GQVCLHIK 124
             G + L + 
Sbjct: 141 VKGYLRLKMT 150

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 69.9 bits (171), Expect = 3e-14
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFS 68
           +++++++A   L   ++ G SDPY  +T             +  +  S  P W EE  F 
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68

Query: 69  VDELPVQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDS----------- 114
           V     +I+  ++D + + +   LG V V    + +E       YT              
Sbjct: 69  VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSR 128

Query: 115 PSGQVCLHIK 124
             G + L + 
Sbjct: 129 VKGYLRLKMT 138

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 67.8 bits (166), Expect = 7e-14
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 20/118 (16%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII--------------TCGSEKRFSSMVPGSRYPMWGEE 64
            +L A+NL+  + NG SDP+  +                   KR +  V  S  P W + 
Sbjct: 23  HILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82

Query: 65  FNF---SVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS 116
             +   S+++L  + + VT++D+D    +  LG V++ + S         WY L   +
Sbjct: 83  VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 13/144 (9%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSV- 69
           + + ++ A NL   +L G SDPY   +  S     +KR +S+   +  P + E   F V 
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 213

Query: 70  -DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV-WY-TLDSPSGQVCL-HIK 124
            + +  V + + + D+D I  + V+G   V  E+    G   W   L +P   V   H  
Sbjct: 214 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWH-- 271

Query: 125 TIKLPVNASRVMNGYAGANARRRA 148
            +      S    G  G + +  +
Sbjct: 272 QLVEEKTLSSFTKGGKGLSEKENS 295

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT---CGSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           +L A +L   + NG SDPY  I       +K  + +   +  P++ E F FSV   EL  
Sbjct: 26  ILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQ 85

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE----GQTGAVWYTLDSPSGQVCLHIK 124
           + +  ++YD+D   +  ++G V++    E         +W  +     +     +
Sbjct: 86  RKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGE 140

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL  
Sbjct: 40  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 99

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114
           + + + +YD+D   K  ++G   V + +   G     W  L S
Sbjct: 100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 65.5 bits (160), Expect = 7e-13
 Identities = 20/111 (18%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIIT-----CGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            ++   +L   + NG SDP+  +          K  + +   +  P + EEF + +   +
Sbjct: 42  GIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD 101

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT-LDSPSGQVC 120
           L    + ++++D+DI   +  +G   + + ++G+    WY  L +   ++ 
Sbjct: 102 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE 152

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 65.1 bits (159), Expect = 8e-13
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV--DELP 73
            ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL 
Sbjct: 47  GIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELG 106

Query: 74  VQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115
            + + + +YD+D   K  ++G   V + +   G     W  L S 
Sbjct: 107 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 67.9 bits (166), Expect = 8e-13
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 12/129 (9%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPG 55
               +  P       + + +L AKNL   ++ G SDPY  I         +K+ +++   
Sbjct: 140 CFSLRYVPTAG---KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 196

Query: 56  SRYPMWGEEFNFSV--DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-T 111
           +  P + E F+F V  +++  VQ++VT+ D+D I K+  +G V V   S G     W   
Sbjct: 197 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 256

Query: 112 LDSPSGQVC 120
           L +P   + 
Sbjct: 257 LANPRRPIA 265

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT---CGSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL  
Sbjct: 25  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAG 84

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTIKL 128
           + + + +YD+D   K  ++G   V + +   G     W  L S   +    +  I  
Sbjct: 85  KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICF 141

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNF---SVDELP 73
           ++ A+ L   + +GTSDP+  I        K  + +   +  P W E F F     +++ 
Sbjct: 32  IMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVV 91

Query: 74  VQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
            +I+ + + D+D   ++  +G V + +      Q    W  L    
Sbjct: 92  QRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            ++ A+NL   ++ GTSDPY  +         EK+ +     +  P++ E F F +  ++
Sbjct: 21  NIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEK 80

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
           L    II+T+ D D + ++ V+G + ++ +S       W   +  P   V 
Sbjct: 81  LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA 131

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMW 61
              TN+   + + +L A++L  ++++G SDPY  +          K+ + +   +   ++
Sbjct: 26  QSTTNT---LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 82

Query: 62  GEEFNFSV--DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSG 117
            E F F +  + L  + +   + D +   ++ V+G +++   +EG  G  W    D P  
Sbjct: 83  NELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 142

Query: 118 QVC 120
           Q+ 
Sbjct: 143 QIA 145

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            +L AKNL   ++ G SDPY  I         +K+ +++   +  P + E F+F V  ++
Sbjct: 30  VILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ 89

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
           +  VQ++VT+ D+D I K+  +G V V   S G     W   L +P   + 
Sbjct: 90  IQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 12/105 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           +L AK+L         +PY  I          KR +  V  +  P W + F +      E
Sbjct: 24  ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE 83

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVES-EGQTGAVWYTL 112
              +++ +T++D   + +  S  LG +++ +E+        WY L
Sbjct: 84  FRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 128

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 9/103 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           ++ AK L   + NG +DPY  +        S K  +  +  +R P+W E   +   + ++
Sbjct: 35  IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 94

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD 113
           +  + + +++ D D    +  +G    +++         + + 
Sbjct: 95  MQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNIC 137

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           +L AK+L         +PY  I          KR +  V  +  P W + F +      E
Sbjct: 27  ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE 86

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              +++ +T++D   + +  S  LG +++ +E+        WY L +  
Sbjct: 87  FRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQTHD 135

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 62.0 bits (151), Expect = 9e-12
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 15/135 (11%)

Query: 2   VQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGS 56
           ++   D Q      + L ++  K LI     GT DPY  I           + +  VP  
Sbjct: 18  LRLSIDAQDRV---LLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDC 73

Query: 57  RYPMWGEEFNFSV--DELPVQIIVTIYDWDIIWK-STVLGSVIV---TVESEGQTGAVWY 110
           R P + E F F V  ++   +++VT+++     + S ++G +     ++ +  +  + WY
Sbjct: 74  RDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWY 133

Query: 111 TLDSPSGQVCLHIKT 125
            L         H+K 
Sbjct: 134 YLLGEHLGRTKHLKV 148

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 33  GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92
              + Y  +   + K  +  V GS  P W ++F F ++ L + + V +++  +IW  T++
Sbjct: 21  EKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDLGLTVEVWNKGLIWD-TMV 78

Query: 93  GSVIVTVE----SEGQTGAVWYTLDSPS----GQVCLHIK 124
           G+V + +     S  +    W TLDS +     ++C    
Sbjct: 79  GTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKD 118

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIIT----CGSEKRFSSMVPGSRYPMWGEEFNFSV--DEL 72
             L A      N +G  D Y   +     GS +  +++     +  W E     +  +EL
Sbjct: 31  TRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS 116
           P   + +T+   D   + +V G + + ++        A W  L +  
Sbjct: 88  PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 12/107 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT-----CGSEKRF-SSMVPGSRYPMWGEEFNFSV--DE 71
           ++   NL              +        +   F +  +  S   ++ E F  S+    
Sbjct: 49  IIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPA 108

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDS 114
           L  + + V +   D       LG   +    V   G+    WY L S
Sbjct: 109 LHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 20  LLAAKNLIGANL-NGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
           +     L  A+     S+PY             KR +S+   +  P++ E   + +    
Sbjct: 29  VKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESL 88

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
           L  + +  +++      ++T LG   + ++S    +       L    
Sbjct: 89  LAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 55.4 bits (133), Expect = 3e-09
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 10/131 (7%)

Query: 6   GDPQTNSAYLIKLELLAAKNLIGANLNGTSD---PYAIITCGSEKRFSSMVPGSRYPMWG 62
           G P  +      L LL    +  A  +G  +    Y  +   + +  +  V GS  P W 
Sbjct: 1   GSPGISGGGGGILSLLCVG-VKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGS-QPSWE 58

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTV----ESEGQTGAVWYTLDSPSGQ 118
           ++F F ++ L + + V +++  +IW  T++G+V + +    +S  +    W TLDS +  
Sbjct: 59  QDFMFEINRLDLGLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIM 117

Query: 119 VCLHIKTIKLP 129
               I   K P
Sbjct: 118 ADSEICGTKDP 128

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 17/109 (15%), Positives = 46/109 (42%), Gaps = 12/109 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV---D 70
            ++  K+L+  +     +PY        T  + KR + +   +R P + E   +S    +
Sbjct: 25  MVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE 83

Query: 71  ELPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
            L  + + +++   + + ++  LG + + ++     +    WY L + +
Sbjct: 84  TLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAAT 132

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 13/111 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            + A +NLI  + +G SDPY  +        S +R + +   +  P++ + F+FSV   E
Sbjct: 29  VVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPE 87

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVESE--GQTGAVWYTLDSPSG 117
           +  + + V + +          +LG V+V + SE   +    WY L   SG
Sbjct: 88  VQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 54.4 bits (131), Expect = 6e-09
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 2   VQFKGDPQTNSAYLIKLELLAAKNLIGANL-NGTSDPYAIIT-----CGSEKRFSSMVPG 55
           +Q   + +      +++E++ A++L        T  PY  +          K+ + +   
Sbjct: 21  IQIGMEDKKGQ---LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARK 77

Query: 56  SRYPMWGEEFNFSVDELPVQIIVTIY-DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112
           +  P++ +   F        + V ++ D+  +     +G   + +E          WY L
Sbjct: 78  TLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

Query: 113 DSPSGQV 119
             PS  V
Sbjct: 138 FPPSSLV 144

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 18/116 (15%)

Query: 20  LLAAKNLIGAN-------LNGTSDPYA---IITCGSEKRFSSMVPGSRYPMWGEEFNFSV 69
           ++ A++L               S+PY    ++      + + +   ++ P++ E + F +
Sbjct: 32  VIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEI 91

Query: 70  --DELPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL---DSPSG 117
              E   + + +T+ D+D   +  V+G V V +      + G  W  L      SG
Sbjct: 92  PFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGPSSG 147

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 20  LLAAKNLIGANLNG-TSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV---DEL 72
           +  A+ L   +    TSDPY  +T       K  + ++  +  P + E F F      ++
Sbjct: 28  IKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQI 87

Query: 73  PVQII-VTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDSP 115
               +  TI  +D   +  ++G V++    +E       +   + S 
Sbjct: 88  QELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 53.8 bits (128), Expect = 8e-08
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 35  SDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ--IIVTIYDWDIIWKSTVL 92
           +D Y  +  G ++  + +V  +  P W ++ +F    L     + V ++D D  W   +L
Sbjct: 414 TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLL 473

Query: 93  GSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLP 129
           GS   +  S      V   L+   G+V        LP
Sbjct: 474 GSCDRSPHSGFHE--VTCELN--HGRVKFSYHAKCLP 506

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 51.5 bits (122), Expect = 5e-07
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 8/114 (7%)

Query: 14  YLIKLELLAAKNLI---GANLNGTSDPYAII---TCGSEKRFSSMVPGSRYPMWGEEFNF 67
           +   + +L A  +      ++  T DPY  +   T    ++ +        P+W E F F
Sbjct: 18  HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77

Query: 68  SVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
            +D     ++ +T+ D +       LG+   TV S                   
Sbjct: 78  ILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEM 130

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 11/72 (15%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 30  NLNGTSDPYAIITCGSEKRFSSMVPGSRYP-MWGEEFNFSVDELPVQ---IIVTIYDWDI 85
            L G +D  A +T   +  +S ++        + E F + V     +   + + I+++  
Sbjct: 32  ELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91

Query: 86  IWKSTVLGSVIV 97
           ++ + ++G+  +
Sbjct: 92  VFSNKLIGTFRM 103

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 43.8 bits (102), Expect = 1e-04
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 15/113 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF----SSMVPGSRYPMWGEEFNF---- 67
           +KL ++ A+ L           Y  +                       WGE F F    
Sbjct: 13  LKLWIIEARELPP-----KKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67

Query: 68  SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTLDSPSGQ 118
           +V  L + +           K+  +G V V V   +       WY +  P+G 
Sbjct: 68  AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 43/304 (14%), Positives = 94/304 (30%), Gaps = 94/304 (30%)

Query: 25  NLIGANL---NGTSDPYAIITCGSEKRFSSMVPGS-----------RYPMWGEEFN-FSV 69
           ++I  ++     T D +  + C    + ++++  S            +    +  + F  
Sbjct: 331 SIIAESIRDGLATWDNWKHVNC---DKLTTIIESSLNVLEPAEYRKMF----DRLSVFPP 383

Query: 70  D-ELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-------EGQTGAVWYTLDSPSGQVCL 121
              +P  ++       +IW   +   V+V V         E Q      ++  PS  + L
Sbjct: 384 SAHIPTILLS------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLEL 435

Query: 122 HIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVV----------HQKPGPLQTIFNL 171
            +K          +++ Y   N  +    D   P  +          H K         L
Sbjct: 436 KVKLENEYALHRSIVDHY---NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 172 LPDEFVELSYSCVIERSFLYHG----------------RMYVSAWHICFHSNAFSRQMKV 215
               F++  +   +E+   +                  + Y    +IC +   + R +  
Sbjct: 493 FRMVFLDFRF---LEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNA 547

Query: 216 IIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR 275
           I     +D + + +   I    T +LR+         L + D  + +          A +
Sbjct: 548 I-----LDFLPKIEENLICSKYTDLLRIA--------LMAEDEAI-F--------EEAHK 585

Query: 276 QLQR 279
           Q+QR
Sbjct: 586 QVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	524
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.82
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.8
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.79
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.78
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.78
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.78
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.77
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.76
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.75
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.74
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.72
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.72
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.71
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.7
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.7
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.7
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.7
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.7
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.69
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.69
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.69
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.68
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.68
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.68
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.67
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.67
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.66
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.66
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.66
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.65
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.65
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.65
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.64
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.64
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.6
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.58
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.57
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.56
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.56
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.47
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.45
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.42
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.4
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.36
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.26
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.2
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.95
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.91
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.91
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.82
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.74
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	95.36
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	93.79
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	93.23
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	93.06
2pcs_A	162	Conserved protein; structural genomics, unknown fu	93.02
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	91.46
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	90.73
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	90.25
3qsz_A	189	STAR-related lipid transfer protein; structural ge	89.91
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	88.9
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	88.74
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	88.58
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	88.46
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	87.78
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	87.51
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	87.13
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	86.49
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	85.91
1pfj_A	108	TFIIH basal transcription factor complex P62 subun	85.33
1t77_A	414	Lipopolysaccharide-responsive and beige-like ancho	84.22
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	83.04
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	82.61
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	81.54
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	80.44
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	80.16

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.82  E-value=1.2e-19  Score=158.82  Aligned_cols=120  Identities=23%  Similarity=0.412  Sum_probs=108.5

Q ss_pred             CCCCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCC
Q 009822            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (524)
Q Consensus         8 ~~~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~   87 (524)
                      ......+.|.|+|++|++|++++..|.+||||++.+++..++|+++++++||.|||+|.|.+.+....|.|+|||++..+
T Consensus         7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~   86 (133)
T 2ep6_A            7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK   86 (133)
T ss_dssp             CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred             cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCC
Confidence            44577899999999999999999999999999999999999999999999999999999999887788999999999998


Q ss_pred             CCceeEEEEEEcccCCCcccEEEEecC------CCCeeEEEEEEEe
Q 009822           88 KSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTIK  127 (524)
Q Consensus        88 ~d~~iG~~~i~l~~~~~~~~~w~~L~~------~~G~i~~~l~~~~  127 (524)
                      ++++||++.+++.++.....+|++|..      ..|+|++++.+.+
T Consensus        87 ~~~~lG~~~i~l~~l~~~~~~w~~L~~~~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           87 PPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             EEEECCBCEEEGGGCCSSCCEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             CCCeeEEEEEEHHHccCCCceEEEeecCCCCCccceEEEEEEEEEe
Confidence            999999999999999666689999975      3488888887764

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.80  E-value=1.1e-18  Score=155.75  Aligned_cols=117  Identities=29%  Similarity=0.495  Sum_probs=104.7

Q ss_pred             CCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCC---
Q 009822           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII---   86 (524)
Q Consensus        10 ~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~---   86 (524)
                      ....+.|.|+|++|++|++++..|.+||||++.++....+|+++++++||.|||+|.|.+......|.|+|||++..   
T Consensus        13 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~   92 (148)
T 3kwu_A           13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKS   92 (148)
T ss_dssp             --CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHH
T ss_pred             cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccc
Confidence            34579999999999999999999999999999999999999999999999999999999987778899999999986   


Q ss_pred             --------CCCceeEEEEEEcccCCCcccEEEEecC------CCCeeEEEEEEE
Q 009822           87 --------WKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI  126 (524)
Q Consensus        87 --------~~d~~iG~~~i~l~~~~~~~~~w~~L~~------~~G~i~~~l~~~  126 (524)
                              +++++||++.++|.++.....+|++|..      ..|+|++++.+.
T Consensus        93 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           93 RVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHTTTSSCSSEEEEEEEEEGGGCCSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             cccccccCCCCccEEEEEEEHHHCcCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                    7899999999999999777889999974      248888877754

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.79  E-value=7.1e-19  Score=157.77  Aligned_cols=113  Identities=15%  Similarity=0.225  Sum_probs=99.3

Q ss_pred             CCceEEEEEEEEeecCcCCCC----------CCCCCcEEEEEECCeE-EeeeeecCCCCCccccEEEEEecCCCcEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANL----------NGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT   79 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~----------~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~   79 (524)
                      ...|.|.|+|++|++|+++|.          .|.+||||++.++... .+|+++++++||.|||+|.|.+.+ ...|.|+
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~  104 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELA  104 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEE
Confidence            457899999999999999883          3679999999998766 589999999999999999999865 4689999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccC--C----CcccEEEEecCCCCeeEEEEEE
Q 009822           80 IYDWDIIWKSTVLGSVIVTVESE--G----QTGAVWYTLDSPSGQVCLHIKT  125 (524)
Q Consensus        80 v~d~d~~~~d~~iG~~~i~l~~~--~----~~~~~w~~L~~~~G~i~~~l~~  125 (524)
                      |||+|.+++|++||.+.|+|.++  +    ...+.|++|.+ .|+|++.+.+
T Consensus       105 V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-~G~i~l~l~~  155 (157)
T 2fk9_A          105 VFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-EGKVFVVITL  155 (157)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS-SCEEEEEEEE
T ss_pred             EEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC-CcEEEEEEEE
Confidence            99999999999999999999987  2    44689999985 8999888876

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=2.9e-18  Score=151.33  Aligned_cols=118  Identities=19%  Similarity=0.330  Sum_probs=101.8

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecC----CCcEEEEEEEEcCCC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDII   86 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~v~d~d~~   86 (524)
                      ...|.|.|+|++|++|+.++. |.+||||+++++...++|+++++++||.|||+|.|.+..    ....|.|+|||++.+
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~   82 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETI   82 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCS
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCC
Confidence            567899999999999999998 999999999999999999999999999999999999864    357799999999999


Q ss_pred             CCCceeEEEEEEcccC--CCcccEEEE---ecCC-----CCeeEEEEEEEecc
Q 009822           87 WKSTVLGSVIVTVESE--GQTGAVWYT---LDSP-----SGQVCLHIKTIKLP  129 (524)
Q Consensus        87 ~~d~~iG~~~i~l~~~--~~~~~~w~~---L~~~-----~G~i~~~l~~~~~~  129 (524)
                      +++++||.+.++|.++  +.....|+.   |...     .|+|++++.+.+..
T Consensus        83 ~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~  135 (140)
T 2dmh_A           83 GQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPPS  135 (140)
T ss_dssp             SSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCCB
T ss_pred             CCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECCC
Confidence            9999999999999998  445678988   6442     26777777766544

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.78  E-value=1.2e-18  Score=153.11  Aligned_cols=120  Identities=22%  Similarity=0.376  Sum_probs=104.8

Q ss_pred             CCCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeec-CCCCCccccEEEEEecCCCcEEEEEEEEcCCCC
Q 009822            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (524)
Q Consensus         9 ~~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~   87 (524)
                      +....+.|.|+|++|++|+..+..|.+||||+++++....+|++++ +++||.|||+|.|.+......|.|+|||++.++
T Consensus         5 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~   84 (136)
T 1wfj_A            5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGT   84 (136)
T ss_dssp             CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCT
T ss_pred             CCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCC
Confidence            3467899999999999999999999999999999998889999998 899999999999999877788999999999999


Q ss_pred             CCceeEEEEEEcccC---CCcccEEEEecC---CCCeeEEEEEEEec
Q 009822           88 KSTVLGSVIVTVESE---GQTGAVWYTLDS---PSGQVCLHIKTIKL  128 (524)
Q Consensus        88 ~d~~iG~~~i~l~~~---~~~~~~w~~L~~---~~G~i~~~l~~~~~  128 (524)
                      +|++||.+.++|.++   +.....|++|..   ..|+|++++.+.+.
T Consensus        85 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~  131 (136)
T 1wfj_A           85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeC
Confidence            999999999999987   334678999962   23667777766654

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.78  E-value=3.2e-18  Score=153.54  Aligned_cols=119  Identities=19%  Similarity=0.331  Sum_probs=96.0

Q ss_pred             CCCCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC------eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEE
Q 009822            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY   81 (524)
Q Consensus         8 ~~~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~   81 (524)
                      ......+.|.|+|++|++|+.++..|.+||||++.+..      ..++|+++++++||.|||+|.|.+......|.|+||
T Consensus        14 ~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~   93 (153)
T 3b7y_A           14 EDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVF   93 (153)
T ss_dssp             SCCTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEE
T ss_pred             cCCCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEE
Confidence            34567899999999999999999899999999999863      467899999999999999999999877778999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCC--Cc------ccEEEEecCC------CCeeEEEEEEE
Q 009822           82 DWDIIWKSTVLGSVIVTVESEG--QT------GAVWYTLDSP------SGQVCLHIKTI  126 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~~--~~------~~~w~~L~~~------~G~i~~~l~~~  126 (524)
                      |++.++++++||++.++|.++.  ..      ...|++|.++      .|+|++++.+.
T Consensus        94 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~  152 (153)
T 3b7y_A           94 DENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL  152 (153)
T ss_dssp             ECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred             ECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence            9999999999999999999882  21      1589999753      38888887764

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.77  E-value=6.6e-18  Score=155.23  Aligned_cols=120  Identities=20%  Similarity=0.315  Sum_probs=96.6

Q ss_pred             CCCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC------eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEE
Q 009822            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD   82 (524)
Q Consensus         9 ~~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d   82 (524)
                      .+...|.|.|+|++|++|+.++..|.+||||++.+..      ..++|+++++++||.|||+|.|.+......|.|+|||
T Consensus         3 ~~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d   82 (176)
T 3m7f_B            3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFD   82 (176)
T ss_dssp             CCTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEE
T ss_pred             CCCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEE
Confidence            3466899999999999999999999999999999864      5679999999999999999999998767789999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCc-cc-------EEEEecCC------CCeeEEEEEEEec
Q 009822           83 WDIIWKSTVLGSVIVTVESEGQT-GA-------VWYTLDSP------SGQVCLHIKTIKL  128 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~~~~-~~-------~w~~L~~~------~G~i~~~l~~~~~  128 (524)
                      ++.++++++||.+.|+|..+... ..       .||+|..+      .|.|++++.+.+.
T Consensus        83 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           83 ENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             CC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            99999999999999999998321 11       79999752      4888888887765

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.76  E-value=2.8e-18  Score=150.80  Aligned_cols=114  Identities=18%  Similarity=0.238  Sum_probs=98.7

Q ss_pred             CceEEEEEEEEeecCcCCCCCCC-----------CCcEEEEEECCeE-EeeeeecCCCCCccccEEEEEecCCCcEEEEE
Q 009822           12 SAYLIKLELLAAKNLIGANLNGT-----------SDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT   79 (524)
Q Consensus        12 ~~~~L~V~vi~A~~L~~~d~~g~-----------~dpyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~   79 (524)
                      ..|.|.|+|++|++|+++|..+.           +||||++.++... .+|+++++++||.|||+|.|.+.+. ..|.|+
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~   82 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELA   82 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEE
Confidence            35899999999999999886544           9999999998765 5899999999999999999998764 789999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCC----cccEEEEecCCCCeeEEEEEEEe
Q 009822           80 IYDWDIIWKSTVLGSVIVTVESEGQ----TGAVWYTLDSPSGQVCLHIKTIK  127 (524)
Q Consensus        80 v~d~d~~~~d~~iG~~~i~l~~~~~----~~~~w~~L~~~~G~i~~~l~~~~  127 (524)
                      |||+|.+++|++||.+.+++.++..    ..+.|++|.+ .|++++.+.+..
T Consensus        83 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~i~l~l~~~~  133 (136)
T 1gmi_A           83 VFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-EGKVYVIIDLSG  133 (136)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-SCEEEEEEEEEE
T ss_pred             EEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC-CeEEEEEEEEEe
Confidence            9999999999999999999998722    2378999985 899998888753

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.75  E-value=1.3e-17  Score=144.39  Aligned_cols=111  Identities=20%  Similarity=0.374  Sum_probs=93.8

Q ss_pred             ceEEEEEEEEeecCcCC---CCCCCCCcEEEEEECC---eEEeeeeecCCCCCccccEEEEEec-CCCcEEEEEEEEcCC
Q 009822           13 AYLIKLELLAAKNLIGA---NLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI   85 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~---d~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~v~-~~~~~L~v~v~d~d~   85 (524)
                      .+.|.|+|++|++|+++   +..|.+||||+++++.   ..++|+++++++||.|||+|.|.+. .....|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            58999999999999984   6678999999999974   6789999999999999999999985 446779999999998


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEecCCCCeeEEEEEE
Q 009822           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKT  125 (524)
Q Consensus        86 ~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~~G~i~~~l~~  125 (524)
                      . ++++||.+.++|.++  +.....|++|.+ .|+..+++.+
T Consensus        82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~-~~~g~i~~~l  121 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQ-VTEMVLEMSL  121 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETT-TEEEEEEEEE
T ss_pred             C-CCceeEEEEEEHHHccCCCcEEEEEEcCC-CceEEEEEEE
Confidence            7 489999999999988  445678999986 4444444443

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.74  E-value=2.6e-17  Score=143.76  Aligned_cols=111  Identities=23%  Similarity=0.384  Sum_probs=95.0

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC--eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCC--
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK--   88 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~--   88 (524)
                      ...|.|+|++|++|+++|..|.+||||++.++.  ...+|+++++++||.|||+|.|.+.... .|.|+|||++.+++  
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~~   82 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKKQ   82 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSST
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCCC
Confidence            467999999999999999999999999999964  6789999999999999999999987643 49999999998876  


Q ss_pred             -CceeEEEEEEcccC---CCcccEEEEecCC--------CCeeEEEEE
Q 009822           89 -STVLGSVIVTVESE---GQTGAVWYTLDSP--------SGQVCLHIK  124 (524)
Q Consensus        89 -d~~iG~~~i~l~~~---~~~~~~w~~L~~~--------~G~i~~~l~  124 (524)
                       |++||++.+++..+   ......|++|..+        .|+|.+++.
T Consensus        83 ~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~  130 (132)
T 3pyc_A           83 GAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQ  130 (132)
T ss_dssp             TTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred             CCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEE
Confidence             79999999998876   4445689999754        466666654

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.72  E-value=4.2e-17  Score=142.91  Aligned_cols=103  Identities=15%  Similarity=0.310  Sum_probs=90.2

Q ss_pred             CceEEEEEEEEeecCcCCCCCCCCCcEEEEEE-----CCeEEeeeeecCCCCCccccEEEEE-ecC---CCcEEEEEEEE
Q 009822           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (524)
Q Consensus        12 ~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~v~d   82 (524)
                      ..+.|.|+|++|++|+. +..|.+||||++++     .....+|+++++++||.|||+|.|. +..   ....|.|+|||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            45789999999999997 77899999999998     3467799999999999999999999 653   35689999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEecCC
Q 009822           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~  115 (524)
                      ++.++++++||++.++|.++  +.....||+|.++
T Consensus        97 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~  131 (134)
T 2b3r_A           97 AESLRENFFLGGITLPLKDFNLSKETVKWYQLTAA  131 (134)
T ss_dssp             CCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred             CCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence            99999999999999999998  4567899999863

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.72  E-value=1.8e-17  Score=148.90  Aligned_cols=104  Identities=14%  Similarity=0.122  Sum_probs=91.6

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC------eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~   81 (524)
                      ...+.|.|+|++|++|+++|..|.+||||++++..      .+++|+++++++||.|||+|.|.+...   ...|.|+||
T Consensus        40 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~  119 (155)
T 2z0u_A           40 EKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVC  119 (155)
T ss_dssp             TTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEE
T ss_pred             CCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEE
Confidence            34578999999999999999999999999999854      267999999999999999999997542   467999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC---CCcccEEEEecC
Q 009822           82 DWDIIWKSTVLGSVIVTVESE---GQTGAVWYTLDS  114 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~---~~~~~~w~~L~~  114 (524)
                      |+|.++++++||++.++|.++   .....+||+|.+
T Consensus       120 d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A          120 TTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             EECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             ECCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence            999999999999999999988   356789999863

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.71  E-value=9.4e-17  Score=146.89  Aligned_cols=117  Identities=12%  Similarity=0.220  Sum_probs=95.9

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~   90 (524)
                      ...+.|.|+|++|++|+..+..+.+||||++.+++...+|+++++++||.|||+|.|.+.. ...|.|+|||+|.+++|+
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd  111 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDV  111 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCE
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCc
Confidence            4578899999999999944445569999999999988999999999999999999999864 788999999999999999


Q ss_pred             eeEEEEEEcccCC---C----cccEEEEecCC------CCeeEEEEEEEec
Q 009822           91 VLGSVIVTVESEG---Q----TGAVWYTLDSP------SGQVCLHIKTIKL  128 (524)
Q Consensus        91 ~iG~~~i~l~~~~---~----~~~~w~~L~~~------~G~i~~~l~~~~~  128 (524)
                      +||.+.++|.++.   .    ....|++|..+      .|+|.+.|.+...
T Consensus       112 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          112 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             eEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            9999999999871   1    12679999753      3666666655433

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.70  E-value=4.4e-17  Score=144.34  Aligned_cols=104  Identities=23%  Similarity=0.413  Sum_probs=92.5

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEE---CCeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d   84 (524)
                      ...+.|.|+|++|++|+.++..+.+||||++.+   +....+|+++++++||.|||+|.|.+..   ....|.|+|||++
T Consensus        31 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  110 (143)
T 3f04_A           31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCC
Confidence            456889999999999999999999999999998   4557899999999999999999999753   2467999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        85 ~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~  114 (524)
                      .++++++||++.++|..+  +.....|++|.+
T Consensus       111 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          111 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            999999999999999988  456789999975

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.70  E-value=8.3e-17  Score=144.18  Aligned_cols=104  Identities=23%  Similarity=0.413  Sum_probs=92.4

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEE---CCeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d   84 (524)
                      ...+.|.|+|++|++|+.++..|.+||||++++   +....+|+++++++||.|||+|.|.+..   ....|.|+|||++
T Consensus        39 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  118 (152)
T 1rsy_A           39 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  118 (152)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECC
Confidence            356789999999999999999999999999998   3457799999999999999999998753   2577999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        85 ~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~  114 (524)
                      .++++++||++.++|.++  +....+|++|.+
T Consensus       119 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          119 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             SSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            999999999999999998  455789999975

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=1.1e-16  Score=141.42  Aligned_cols=105  Identities=20%  Similarity=0.350  Sum_probs=92.0

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecC----CCcEEEEEEEEc
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDW   83 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~v~d~   83 (524)
                      +..+.|.|+|++|++|+.++..|.+||||++++.   ....+|+++++++||.|||+|.|.+..    ....|.|+|||+
T Consensus        23 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  102 (141)
T 2d8k_A           23 FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDY  102 (141)
T ss_dssp             SSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEEC
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEEC
Confidence            3567899999999999999999999999999983   457799999999999999999998522    257799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEecCC
Q 009822           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~  115 (524)
                      +.++++++||++.++|.++  +.....|++|.++
T Consensus       103 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  136 (141)
T 2d8k_A          103 DRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS  136 (141)
T ss_dssp             CSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred             CCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence            9999999999999999998  4457899999764

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.70  E-value=6.2e-17  Score=140.65  Aligned_cols=103  Identities=22%  Similarity=0.395  Sum_probs=85.6

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEE-----CCeEEeeeeecCCCCCccccEEEEEecC----CCcEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY   81 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~v~   81 (524)
                      +..+.|.|+|++|++|+.++..|.+||||++.+     +....+|+++++++||.|||+|.|.+..    ....|.|+||
T Consensus        15 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~   94 (129)
T 2bwq_A           15 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   94 (129)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             cCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEE
Confidence            446899999999999999999999999999998     3567899999999999999999999522    2467999999


Q ss_pred             EcCCCCC--CceeEEEEEEcccC-CCcccEEEEec
Q 009822           82 DWDIIWK--STVLGSVIVTVESE-GQTGAVWYTLD  113 (524)
Q Consensus        82 d~d~~~~--d~~iG~~~i~l~~~-~~~~~~w~~L~  113 (524)
                      |++..++  +++||.+.++|.++ .....+||+|+
T Consensus        95 d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~Lq  129 (129)
T 2bwq_A           95 DQARVREEESEFLGEILIELETALLDDEPHWYKLQ  129 (129)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             ECCcCcCcCCceeEEEEEEccccCCCcCCccEECc
Confidence            9999887  99999999999987 44478999984

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.70  E-value=3e-17  Score=146.31  Aligned_cols=106  Identities=15%  Similarity=0.214  Sum_probs=92.0

Q ss_pred             CCceEEEEEEEEeecCcCCC-CCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d-~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~   81 (524)
                      +..+.|.|+|++|++|+.++ ..|.+||||++.+.     ....+|+++++++||.|||+|.|.+...   ...|.|+||
T Consensus        20 ~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~   99 (148)
T 3fdw_A           20 QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVW   99 (148)
T ss_dssp             TTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEE
Confidence            44688999999999999988 68899999999985     3467899999999999999999998653   346999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEecCCC
Q 009822           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~~  116 (524)
                      |+|.++++++||++.++|.++  ......|++|.++.
T Consensus       100 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A          100 HHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             EECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred             ECCCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence            999999999999999999988  45567999998754

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.69  E-value=9.4e-17  Score=143.28  Aligned_cols=102  Identities=27%  Similarity=0.471  Sum_probs=91.1

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecCC--CcEEEEEEEEcCC
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDI   85 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~--~~~L~v~v~d~d~   85 (524)
                      .+.|.|+|++|++|+.++..|.+||||++++.     ....+|+++++++||.|||+|.|.+...  ...|.|+|||++.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            46799999999999999999999999999985     4577999999999999999999998642  4679999999999


Q ss_pred             CCCCceeEEEEEEcccC-CCcccEEEEecC
Q 009822           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (524)
Q Consensus        86 ~~~d~~iG~~~i~l~~~-~~~~~~w~~L~~  114 (524)
                      ++++++||++.++|.++ ......||+|.+
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~~~~~W~~L~~  139 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKAGVDGWFKLLS  139 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTCCEEEEEECBC
T ss_pred             CCCCCEEEEEEEEHHHhCcCccCCeEEccC
Confidence            99999999999999988 445789999976

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.69  E-value=3.4e-17  Score=144.83  Aligned_cols=105  Identities=25%  Similarity=0.440  Sum_probs=91.3

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCe--------------EEeeeeecCCCCCccccEEEEE-ecC---CCc
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE--------------KRFSSMVPGSRYPMWGEEFNFS-VDE---LPV   74 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~--------------~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~   74 (524)
                      .+.|.|+|++|++|++++..|.+||||++.+...              ..+|+++++++||.|||+|.|. +..   ...
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            4689999999999999999999999999999753              4679999999999999999997 532   356


Q ss_pred             EEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEecCCCC
Q 009822           75 QIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPSG  117 (524)
Q Consensus        75 ~L~v~v~d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~~G  117 (524)
                      .|.|+|||+|.++++++||.+.++|..+  ......||+|.+..+
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~  141 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTE  141 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCCC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccCC
Confidence            7999999999999999999999999988  345789999987543

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.68  E-value=1.6e-16  Score=142.43  Aligned_cols=105  Identities=26%  Similarity=0.411  Sum_probs=91.3

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEe--cCCCcEEEEEEEEc
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV--DELPVQIIVTIYDW   83 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v--~~~~~~L~v~v~d~   83 (524)
                      ...+.|.|+|++|++|++++ .|.+||||++.+.     ....+|+++++++||.|||+|.|.+  .+....|.|+|||+
T Consensus        24 ~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~  102 (153)
T 3fbk_A           24 AQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNR  102 (153)
T ss_dssp             ESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEEC
T ss_pred             CCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeC
Confidence            45678999999999999999 6999999999983     3567899999999999999999998  45556799999999


Q ss_pred             CCCCC-CceeEEEEEEcccCC---CcccEEEEecCCC
Q 009822           84 DIIWK-STVLGSVIVTVESEG---QTGAVWYTLDSPS  116 (524)
Q Consensus        84 d~~~~-d~~iG~~~i~l~~~~---~~~~~w~~L~~~~  116 (524)
                      +.+++ +++||++.++|.++.   .....||+|.++.
T Consensus       103 d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~  139 (153)
T 3fbk_A          103 ASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH  139 (153)
T ss_dssp             CSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT
T ss_pred             CCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChh
Confidence            99877 999999999999873   5677999998743

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.68  E-value=1.2e-16  Score=146.15  Aligned_cols=104  Identities=17%  Similarity=0.286  Sum_probs=91.1

Q ss_pred             ceEEEEEEEEeecCcCCCC-CCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEE-EcCC
Q 009822           13 AYLIKLELLAAKNLIGANL-NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWDI   85 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~-~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~-d~d~   85 (524)
                      .+.|.|+|++|++|+++|. .|.+||||++.+..     ..++|+++++++||.|||+|.|.+......|.|+|| |+|.
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~  108 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGR  108 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECST
T ss_pred             CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCC
Confidence            5789999999999999985 79999999999853     267899999999999999999998666678999999 9999


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEecCCC
Q 009822           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (524)
Q Consensus        86 ~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~~  116 (524)
                      ++++++||++.++|.++  +....+||+|.++.
T Consensus       109 ~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  141 (171)
T 2q3x_A          109 MDHKCFMGVAQILLEELDLSSMVIGWYKLFPPS  141 (171)
T ss_dssp             TCSSEEEEEEEECGGGSCTTSCEEEEEECBCGG
T ss_pred             CCCCCEEEEEEEEHHHcccCCCcceeEECCCcc
Confidence            99999999999999998  55678999998743

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.68  E-value=1.2e-16  Score=140.91  Aligned_cols=105  Identities=22%  Similarity=0.399  Sum_probs=91.1

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEE-----CCeEEeeeeecCCCCCccccEEEEEe-cC---CCcEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIY   81 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v-~~---~~~~L~v~v~   81 (524)
                      +..+.|.|+|++|++|+.++..|.+||||++++     ....++|+++++++||.|||+|.|.+ ..   ....|.|+||
T Consensus        18 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~   97 (141)
T 1v27_A           18 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   97 (141)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEE
T ss_pred             CCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEE
Confidence            345789999999999999999999999999998     35667999999999999999999994 32   2467999999


Q ss_pred             EcCCCCC--CceeEEEEEEcccC-CCcccEEEEecCC
Q 009822           82 DWDIIWK--STVLGSVIVTVESE-GQTGAVWYTLDSP  115 (524)
Q Consensus        82 d~d~~~~--d~~iG~~~i~l~~~-~~~~~~w~~L~~~  115 (524)
                      |++.+++  +++||.+.++|.++ .....+||+|.++
T Consensus        98 d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~L~~~  134 (141)
T 1v27_A           98 DQARVREEESEFLGEILIELETALLDDEPHWYKLQTH  134 (141)
T ss_dssp             EBCSSSSCCBCCCEEEEEEGGGCCCSSEEEEEECBCC
T ss_pred             ECCCCcCCCCceEEEEEEEccccCCCCCCceEECccc
Confidence            9999887  89999999999987 4447899999863

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.67  E-value=4.3e-16  Score=137.17  Aligned_cols=101  Identities=16%  Similarity=0.220  Sum_probs=87.6

Q ss_pred             CceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC---C-eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEEcC
Q 009822           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---S-EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (524)
Q Consensus        12 ~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~-~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d~d   84 (524)
                      ..+.|.|+|++|+   ++|..|.+||||++.+.   . ..++|+++++++||.|||+|.|.+...   ...|.|+|||+|
T Consensus        24 ~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d  100 (138)
T 1wfm_A           24 QKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD  100 (138)
T ss_dssp             TTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECC
Confidence            4678999999999   46778999999999983   2 256899999999999999999998642   457999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEecCC
Q 009822           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (524)
Q Consensus        85 ~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~  115 (524)
                      .++++++||++.++|.++  .....+|++|.+.
T Consensus       101 ~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~  133 (138)
T 1wfm_A          101 RFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             SSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             CCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence            999999999999999998  5667899999863

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.67  E-value=3.8e-16  Score=137.44  Aligned_cols=105  Identities=18%  Similarity=0.223  Sum_probs=89.5

Q ss_pred             CCceEEEEEEEEeecCcCCCCC-CCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEE-ecC---CCcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~-g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~v~d   82 (524)
                      +..+.|.|+|++|++|+.++.. |.+||||++.+.   ...++|+++++++||.|||+|.|. +..   ....|.|+|||
T Consensus        19 ~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d   98 (138)
T 1ugk_A           19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS   98 (138)
T ss_dssp             GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEE
Confidence            3567899999999999999985 899999999985   367899999999999999999996 543   23579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCC---CcccEEEEecCC
Q 009822           83 WDIIWKSTVLGSVIVTVESEG---QTGAVWYTLDSP  115 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~~---~~~~~w~~L~~~  115 (524)
                      +|.++++++||++.++|.++.   .....|++|.++
T Consensus        99 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A           99 FDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             ECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             CCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            999999999999999999982   233567898764

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=1.5e-16  Score=140.62  Aligned_cols=106  Identities=26%  Similarity=0.399  Sum_probs=90.1

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC-----CeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d   82 (524)
                      +..+.|.|+|++|++|++++..| +||||++++.     ...++|+++++++||.|||+|.|.+..   ....|.|+|||
T Consensus        21 ~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d   99 (142)
T 2dmg_A           21 SQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKN   99 (142)
T ss_dssp             TTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEE
Confidence            34678999999999999999888 9999999983     256799999999999999999999753   23579999999


Q ss_pred             cCCCCC--CceeEEEEEEcccC--CCcccEEEEecCCCC
Q 009822           83 WDIIWK--STVLGSVIVTVESE--GQTGAVWYTLDSPSG  117 (524)
Q Consensus        83 ~d~~~~--d~~iG~~~i~l~~~--~~~~~~w~~L~~~~G  117 (524)
                      ++.+++  +++||++.++|..+  .....+|++|.++.+
T Consensus       100 ~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~  138 (142)
T 2dmg_A          100 SGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG  138 (142)
T ss_dssp             CCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred             CCCccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence            998764  57999999999987  446788999987544

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.66  E-value=3.2e-16  Score=138.59  Aligned_cols=104  Identities=18%  Similarity=0.316  Sum_probs=89.9

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEE-ecCC---CcEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFS-VDEL---PVQIIVTIY   81 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~-v~~~---~~~L~v~v~   81 (524)
                      +..+.|.|+|++|++|+.++..|.+||||++++..     ...+|+++++++||.|||+|.|. +...   ...|.|+||
T Consensus        26 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  105 (142)
T 2chd_A           26 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVC  105 (142)
T ss_dssp             GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence            35678999999999999999999999999999864     67799999999999999999998 5421   367999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~  114 (524)
                      |++.++++++||++.++|.++  +.....|++|..
T Consensus       106 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          106 DEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             EECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             ECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            999999999999999999998  445567777764

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.66  E-value=5.7e-17  Score=142.48  Aligned_cols=108  Identities=26%  Similarity=0.391  Sum_probs=91.2

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCCC---cEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELP---VQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~~---~~L~v~v~d   82 (524)
                      +..+.|.|+|++|++|+.++..|.+||||++++..     ...+|+++++++||.|||+|.|.+....   ..|.|+|||
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           13 PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence            45689999999999999999999999999999853     4668999999999999999999986433   569999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~  118 (524)
                      ++.++++++||.+.+++........+|++|....|+
T Consensus        93 ~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~  128 (138)
T 3n5a_A           93 KDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQ  128 (138)
T ss_dssp             CCSSSCCEEEEEEEESSSSCHHHHHHHHHHHHSTTC
T ss_pred             CCCCCCCcEEEEEEEccccCChHHHHHHHHHhCCCC
Confidence            999999999999999999875555666666544443

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.65  E-value=9.7e-17  Score=145.94  Aligned_cols=106  Identities=17%  Similarity=0.323  Sum_probs=91.0

Q ss_pred             CceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEEc
Q 009822           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (524)
Q Consensus        12 ~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d~   83 (524)
                      ..+.|.|+|++|++|+.++..|.+||||++++..     ...+|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  114 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY  114 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEEC
Confidence            4678999999999999999999999999999864     577999999999999999999998542   45799999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEecCCCC
Q 009822           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G  117 (524)
                      +.++++++||.+.+++.+++....+|++|....+
T Consensus       115 d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~  148 (166)
T 2cm5_A          115 DIGKSNDYIGGCQLGISAKGERLKHWYECLKNKD  148 (166)
T ss_dssp             CSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTT
T ss_pred             CCCCCCcEEEeEEEecccCCchhHHHHHHHhCCC
Confidence            9999999999999999987555566776654333

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.65  E-value=8.4e-16  Score=138.62  Aligned_cols=104  Identities=33%  Similarity=0.471  Sum_probs=88.5

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d   82 (524)
                      +..+.|.|+|++|++|+.++..|.+||||++++..     ...+|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        22 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d  101 (159)
T 1tjx_A           22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (159)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEE
Confidence            45679999999999999999999999999999852     356899999999999999999998542   3569999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--------------CCcccEEEEecC
Q 009822           83 WDIIWKSTVLGSVIVTVESE--------------GQTGAVWYTLDS  114 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~--------------~~~~~~w~~L~~  114 (524)
                      ++.++++++||.+.+++..+              +....+|++|.+
T Consensus       102 ~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~  147 (159)
T 1tjx_A          102 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (159)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence            99999999999999999854              234567777765

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.65  E-value=1.6e-16  Score=142.35  Aligned_cols=107  Identities=18%  Similarity=0.346  Sum_probs=84.8

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEE--CCe---EEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSE---KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~--~~~---~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d   82 (524)
                      +..+.|.|+|++|++|+.++..|.+||||++.+  +..   .++|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        27 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d  106 (153)
T 1w15_A           27 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLD  106 (153)
T ss_dssp             TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEe
Confidence            345789999999999999999999999999998  333   56899999999999999999998653   2569999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEecCCCC
Q 009822           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G  117 (524)
                      ++.++++++||++.+++.+......+|++|....+
T Consensus       107 ~d~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~p~  141 (153)
T 1w15_A          107 SERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPR  141 (153)
T ss_dssp             CCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTT
T ss_pred             CCCCCCCcEEEEEEECCCCCchHHHHHHHHHhCCC
Confidence            99999999999999999986555667777654333

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=3.6e-16  Score=139.16  Aligned_cols=105  Identities=18%  Similarity=0.308  Sum_probs=88.8

Q ss_pred             CCceEEEEEEEEeecCcCC-CC------CCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecC---CCcEEE
Q 009822           11 NSAYLIKLELLAAKNLIGA-NL------NGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQII   77 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~-d~------~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~   77 (524)
                      +..+.|.|+|++|++|+.+ +.      .|.+||||++++.   ....+|+++++++||.|||+|.|.+..   ....|.
T Consensus        23 ~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~  102 (147)
T 2enp_A           23 LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLL  102 (147)
T ss_dssp             TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEE
T ss_pred             CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEE
Confidence            3467899999999999984 43      3589999999985   356799999999999999999999753   235799


Q ss_pred             EEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEecCC
Q 009822           78 VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (524)
Q Consensus        78 v~v~d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~  115 (524)
                      |+|||++.++++++||++.++|.++  ......|+.|.++
T Consensus       103 ~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  142 (147)
T 2enp_A          103 LTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS  142 (147)
T ss_dssp             EEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred             EEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence            9999999999999999999999988  3445789999864

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.64  E-value=2.3e-15  Score=148.82  Aligned_cols=147  Identities=20%  Similarity=0.345  Sum_probs=113.5

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d   84 (524)
                      ...+.|.|+|++|++|++++..|.+||||++.++   ....+|+++++++||.|||+|.|.+..   ....|.|+|||+|
T Consensus        16 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d   95 (284)
T 2r83_A           16 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD   95 (284)
T ss_dssp             TTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence            4568999999999999999999999999999985   346789999999999999999999753   2467999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEecCC-------CCeeEEEEEEEeccccccccccCccccccccc-ccccCCC
Q 009822           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRR-ASLDKQG  154 (524)
Q Consensus        85 ~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~-------~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  154 (524)
                      .++++++||++.++|..+  +.....|++|.+.       .|++.+.+.+.+..    .        ..... +++..+.
T Consensus        96 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~----~--------~l~v~v~~a~~L~  163 (284)
T 2r83_A           96 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTA----G--------KLTVVILEAKNLK  163 (284)
T ss_dssp             SSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTT----T--------EEEEEEEEEESCC
T ss_pred             CCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCcC----C--------ceEEEEEEeECCC
Confidence            999999999999999998  4556899999652       36776666554211    0        01111 1344566


Q ss_pred             Ccccccccccccccc
Q 009822          155 PTVVHQKPGPLQTIF  169 (524)
Q Consensus       155 ~~~~~~k~~~f~~~F  169 (524)
                      +.+..+.+++|-++.
T Consensus       164 ~~d~~~~~dpyv~v~  178 (284)
T 2r83_A          164 KMDVGGLSDPYVKIH  178 (284)
T ss_dssp             CCSTTSCCCEEEEEE
T ss_pred             CcCCCCCcCeEEEEE
Confidence            666666677776665

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.60  E-value=6.8e-15  Score=146.51  Aligned_cols=149  Identities=17%  Similarity=0.248  Sum_probs=112.5

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEE---CCeEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEEcC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d~d   84 (524)
                      ...+.|.|+|++|++|+.+|..|.+||||++++   +....+|+++++++||.|||+|.|.+...   ...|.|+|||+|
T Consensus        17 ~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d   96 (296)
T 1dqv_A           17 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   96 (296)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence            456899999999999999999999999999998   46678999999999999999999998532   347999999999


Q ss_pred             CCCCCceeEEEEEE-cccC---CCcccEEEEecCC------CCeeEEEEEEEeccccccccccCccccccccc-ccccCC
Q 009822           85 IIWKSTVLGSVIVT-VESE---GQTGAVWYTLDSP------SGQVCLHIKTIKLPVNASRVMNGYAGANARRR-ASLDKQ  153 (524)
Q Consensus        85 ~~~~d~~iG~~~i~-l~~~---~~~~~~w~~L~~~------~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  153 (524)
                      .++++++||++.++ +.++   ......|++|...      .|++.+.+.+.+..            ...... +++..+
T Consensus        97 ~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~------------~~l~v~v~~a~~L  164 (296)
T 1dqv_A           97 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTA------------GLLTVTIIKASNL  164 (296)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETTT------------TEEEEEEEEEESC
T ss_pred             CCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEecccc------------ceeEEEEEEeecC
Confidence            99999999999995 4333   4456789999652      37777666554211            011111 134556


Q ss_pred             CCcccccccccccccccc
Q 009822          154 GPTVVHQKPGPLQTIFNL  171 (524)
Q Consensus       154 ~~~~~~~k~~~f~~~F~l  171 (524)
                      .+.+..+++++|-++.-.
T Consensus       165 ~~~d~~g~~Dpyv~v~l~  182 (296)
T 1dqv_A          165 KAMDLTGFSDPYVKASLI  182 (296)
T ss_dssp             CCCSSSSCCCEEEEECCC
T ss_pred             CccCCCCCCCcEEEEEEE
Confidence            666666777887776633

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.58  E-value=2.4e-15  Score=131.02  Aligned_cols=85  Identities=16%  Similarity=0.316  Sum_probs=73.3

Q ss_pred             CceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeec-CCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 009822           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (524)
Q Consensus        12 ~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~   90 (524)
                      +.+.|+|+|++|++|..   .|.+||||++.  .+..+|++++ +++||.|||+|.|.+......|.|+|||+| +++|+
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd   76 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDT   76 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEE
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCC
Confidence            45899999999998853   67899999999  3344555554 689999999999999877778999999999 88999


Q ss_pred             eeEEEEEEcccC
Q 009822           91 VLGSVIVTVESE  102 (524)
Q Consensus        91 ~iG~~~i~l~~~  102 (524)
                      +||++.++|.++
T Consensus        77 ~iG~~~i~l~~l   88 (131)
T 2cjt_A           77 MVGTVWIPLRTI   88 (131)
T ss_dssp             EEEEEEEEGGGS
T ss_pred             eEEEEEEEHHHh
Confidence            999999999987

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.57  E-value=2e-14  Score=153.08  Aligned_cols=113  Identities=21%  Similarity=0.320  Sum_probs=98.2

Q ss_pred             CceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEec--CCCcEEEEEEEEcCCCCCC
Q 009822           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDIIWKS   89 (524)
Q Consensus        12 ~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~--~~~~~L~v~v~d~d~~~~d   89 (524)
                      ..+.|.|+|++|++|+. |..|.+||||++++++...+|+++++++||.|||+|.|.+.  .....|.|+|||+|..++|
T Consensus       392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d  470 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD  470 (540)
T ss_dssp             TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred             cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            36799999999999998 99999999999999998999999999999999999999853  3567799999999999999


Q ss_pred             ceeEEEEEEcccCCCcccEEEEecCCCCeeEEEEEEEecc
Q 009822           90 TVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLP  129 (524)
Q Consensus        90 ~~iG~~~i~l~~~~~~~~~w~~L~~~~G~i~~~l~~~~~~  129 (524)
                      |+||.+.++|..  .....|++|.  +|.+.+.+.+.-.+
T Consensus       471 D~LG~~~~~L~~--g~~~~~~~l~--~G~l~~~~~~~c~p  506 (540)
T 3nsj_A          471 DLLGSCDRSPHS--GFHEVTCELN--HGRVKFSYHAKCLP  506 (540)
T ss_dssp             EEEEEEEECCCS--EEEEEEEECS--SSEEEEEEEEEECT
T ss_pred             CEEEEEEEEeeC--CcEEEEEEcC--CeEEEEEEEEEECC
Confidence            999999999984  2346788875  69988888766544

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.56  E-value=2.1e-14  Score=153.81  Aligned_cols=116  Identities=21%  Similarity=0.339  Sum_probs=101.5

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCC-cEEEEEEEEcCCCCCC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDIIWKS   89 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~v~v~d~d~~~~d   89 (524)
                      ...+.|.|+|++|++|+++|..|.+||||++.+++..++|+++++++||.|||+|.|.+.... ..|.|+|||+|.+++|
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~  463 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPD  463 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSC
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCC
Confidence            446899999999999999999999999999999999999999999999999999999986544 6699999999999999


Q ss_pred             ceeEEEEEEcccCC------CcccEEEEecC-CCCeeEEEEEEE
Q 009822           90 TVLGSVIVTVESEG------QTGAVWYTLDS-PSGQVCLHIKTI  126 (524)
Q Consensus        90 ~~iG~~~i~l~~~~------~~~~~w~~L~~-~~G~i~~~l~~~  126 (524)
                      ++||.+.+++.++.      .....|++|.+ ..|++.+.+.+.
T Consensus       464 d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          464 DFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             CEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             CceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence            99999999999872      12678999976 569988877654

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.56  E-value=2e-14  Score=130.42  Aligned_cols=86  Identities=16%  Similarity=0.300  Sum_probs=74.3

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeec-CCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKS   89 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d   89 (524)
                      +..+.|.|+|++|++|.   ..|.+||||+++  .+..+|++++ +++||.|||+|.|.+......|.|+|||+| +++|
T Consensus        11 g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~d   84 (167)
T 2cjs_A           11 GILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWD   84 (167)
T ss_dssp             SCCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCC
T ss_pred             CceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCC
Confidence            34679999999999884   367899999999  3345666665 689999999999999877778999999999 8899


Q ss_pred             ceeEEEEEEcccC
Q 009822           90 TVLGSVIVTVESE  102 (524)
Q Consensus        90 ~~iG~~~i~l~~~  102 (524)
                      ++||++.|+|.++
T Consensus        85 d~iG~~~i~L~~l   97 (167)
T 2cjs_A           85 TMVGTVWIPLRTI   97 (167)
T ss_dssp             EEEEEEEEEGGGS
T ss_pred             ceEEEEEEEHHHh
Confidence            9999999999987

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.47  E-value=3.1e-13  Score=133.50  Aligned_cols=103  Identities=33%  Similarity=0.480  Sum_probs=87.2

Q ss_pred             CceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC--C---eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEEc
Q 009822           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (524)
Q Consensus        12 ~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d~   83 (524)
                      ..+.|.|+|++|++|+.++..|.+||||++.+.  +   ...+|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus       148 ~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  227 (284)
T 2r83_A          148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  227 (284)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred             cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence            456899999999999999999999999999984  2   356899999999999999999998643   34699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--------------CCcccEEEEecC
Q 009822           84 DIIWKSTVLGSVIVTVESE--------------GQTGAVWYTLDS  114 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~--------------~~~~~~w~~L~~  114 (524)
                      +.++++++||++.+++...              +....+|++|.+
T Consensus       228 d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~  272 (284)
T 2r83_A          228 DKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  272 (284)
T ss_dssp             CSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred             CCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence            9999999999999999863              233457888765

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.45  E-value=1e-12  Score=113.45  Aligned_cols=112  Identities=14%  Similarity=0.249  Sum_probs=92.2

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeec-CCCCCccccEEEEEecC---CCcEEEEEEEEcCCC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII   86 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d~~   86 (524)
                      ++.--|+|+|.+|.+|+     |++|||+++.+.+.+++|++++ ++.||.|||.|.|++..   ....|.|.|||++++
T Consensus        18 ~~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v   92 (144)
T 3l9b_A           18 GSHMALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV   92 (144)
T ss_dssp             -CCEEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT
T ss_pred             CCcEEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc
Confidence            45567999999999997     5889999999999999999998 69999999999999864   356699999999999


Q ss_pred             CCCceeEEEEEEcccC--CCcccEEEEecCCC-----CeeEEEEEEEe
Q 009822           87 WKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-----GQVCLHIKTIK  127 (524)
Q Consensus        87 ~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~~-----G~i~~~l~~~~  127 (524)
                      +++++||.+.++|.++  ......+.+|.+.+     +.|.++|++.+
T Consensus        93 ~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~p  140 (144)
T 3l9b_A           93 FSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQA  140 (144)
T ss_dssp             SCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             cCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecC
Confidence            9999999999999988  33444566776644     44555555554

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.42  E-value=3.7e-13  Score=147.69  Aligned_cols=105  Identities=20%  Similarity=0.356  Sum_probs=93.5

Q ss_pred             CCCceEEEEEEEEeecCcC---CCCCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecC-CCcEEEEEEEE
Q 009822           10 TNSAYLIKLELLAAKNLIG---ANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYD   82 (524)
Q Consensus        10 ~~~~~~L~V~vi~A~~L~~---~d~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~v~d   82 (524)
                      ....+.|.|+|++|++|+.   +|..|.+||||++++.   ...++|+++++++||.|||+|.|.+.. ....|.|+|||
T Consensus        14 ~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D   93 (749)
T 1cjy_A           14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD   93 (749)
T ss_dssp             CCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEE
T ss_pred             CCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEE
Confidence            3567999999999999998   8888999999999997   467899999999999999999999976 45679999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEecCC
Q 009822           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~  115 (524)
                      +|.++ |++||++.++|.++  +.....|++|.+.
T Consensus        94 ~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           94 ANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             CCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             CCCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            99998 99999999999988  4456899999863

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.40  E-value=3e-12  Score=139.29  Aligned_cols=108  Identities=20%  Similarity=0.282  Sum_probs=93.6

Q ss_pred             CCceEEEEEEEEeecCcCCCC--CCCCCcEEEEEECC-----eEEeeeeecCC-CCCccccEEEEEecCCC-cEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGS-RYPMWGEEFNFSVDELP-VQIIVTIY   81 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~--~g~~dpyv~v~~~~-----~~~~T~~~~~t-~nP~W~e~f~f~v~~~~-~~L~v~v~   81 (524)
                      ...+.|.|+|++|++|+..+.  .|.+||||++.+.+     .+.+|++++++ +||.|||+|.|.+..+. ..|+|+||
T Consensus       494 ~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~  573 (624)
T 1djx_A          494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE  573 (624)
T ss_dssp             CCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred             ccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEE
Confidence            367899999999999999884  68999999999843     57799999987 99999999999986543 57999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCee
Q 009822           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQV  119 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~i  119 (524)
                      |+|.++++++||++.++|..+..+ .+|++|....|+.
T Consensus       574 D~D~~~~dd~iG~~~ipl~~L~~G-~r~v~L~d~~g~~  610 (624)
T 1djx_A          574 DYDSSSKNDFIGQSTIPWNSLKQG-YRHVHLLSKNGDQ  610 (624)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGBCCE-EEEEEEECTTSCE
T ss_pred             EcCCCCCCceeEEEEEEHHHcCCC-cEEEeCCCCCcCC
Confidence            999999999999999999999654 4699998877664

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.36  E-value=8.5e-14  Score=138.52  Aligned_cols=102  Identities=26%  Similarity=0.398  Sum_probs=86.7

Q ss_pred             CceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC--C---eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEEc
Q 009822           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (524)
Q Consensus        12 ~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d~   83 (524)
                      ..+.|.|+|++|++|+.+|..|.+||||++++.  +   .+++|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus       150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence            467899999999999999999999999999985  2   457899999999999999999988643   34699999999


Q ss_pred             CCCCCCceeEEEEEEcccCCC-cccEEEEec
Q 009822           84 DIIWKSTVLGSVIVTVESEGQ-TGAVWYTLD  113 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~~~-~~~~w~~L~  113 (524)
                      +.++++++||.+.|++..+.. ...+|+.+.
T Consensus       230 d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~  260 (296)
T 1dqv_A          230 DCIGHNEVIGVCRVGPEAADPHGREHWAEML  260 (296)
T ss_dssp             CSSSCCEEEEECCCSSCTTCHHHHHHHHTSS
T ss_pred             CCCCCCceEEEEEECCccCCchhHHHHHHHH
Confidence            999999999999999987744 445555554

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.26  E-value=2.9e-13  Score=143.52  Aligned_cols=100  Identities=21%  Similarity=0.288  Sum_probs=16.2

Q ss_pred             CCCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-EEeeeeecCC---CCCccccEEEEEecCCCcEEEEEEEEc-
Q 009822            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGS---RYPMWGEEFNFSVDELPVQIIVTIYDW-   83 (524)
Q Consensus         9 ~~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-~~~T~~~~~t---~nP~W~e~f~f~v~~~~~~L~v~v~d~-   83 (524)
                      +.+..+.|.|+|++|++|+++|     ||||.+++++. ..+|++++++   +||.|||+|.|.+......|.|+|||. 
T Consensus         6 ~~r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~   80 (483)
T 3bxj_A            6 SRRVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDS   80 (483)
T ss_dssp             EEEEEECC--------------------------------------------------CCEECC----------------
T ss_pred             cceeccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecC
Confidence            3456788999999999999877     99999999765 4689999998   999999999998654457799999994 


Q ss_pred             C---CCCCCceeEEEEEEcccC--CCcccEEEEec
Q 009822           84 D---IIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (524)
Q Consensus        84 d---~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~  113 (524)
                      |   ..++|++||.+.|++..+  +...+.||+|.
T Consensus        81 d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~  115 (483)
T 3bxj_A           81 DKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVT  115 (483)
T ss_dssp             --------------------------CCEECC---
T ss_pred             CccccCCCCceEEEEEEEHHHhcCCCCCCeEEECC
Confidence            5   367899999999999988  45678999994

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.20  E-value=2.5e-11  Score=134.19  Aligned_cols=103  Identities=27%  Similarity=0.489  Sum_probs=91.0

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEE-----CCeEEeeeeecCCCCCccccEEEEEecC--CCcEEEEEEEEcCC
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDI   85 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~v~d~d~   85 (524)
                      .+.|.|++++|++|.++|..|.+||||++.+     ...+.+|+++++++||.|||+|.|.+..  ....|.|+|||+|.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            4678999999999999999999999999998     4456799999999999999999999853  35669999999999


Q ss_pred             CCCCceeEEEEEEcccC-CCcccEEEEecCC
Q 009822           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDSP  115 (524)
Q Consensus        86 ~~~d~~iG~~~i~l~~~-~~~~~~w~~L~~~  115 (524)
                      .++|++||.+.+++.++ ......|+.|...
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~w~~Lls~  281 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKAGVDGWFKLLSQ  281 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHCCEEEEEECBCT
T ss_pred             ccccccccccccchhhhccCCcccceeeccc
Confidence            99999999999999988 4456899999763

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.95  E-value=7.2e-09  Score=114.99  Aligned_cols=98  Identities=14%  Similarity=0.196  Sum_probs=80.9

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-------eEEeeeeecC-CCCCccccE-EEEE-ecCC-CcEEEEEEE
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPG-SRYPMWGEE-FNFS-VDEL-PVQIIVTIY   81 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-------~~~~T~~~~~-t~nP~W~e~-f~f~-v~~~-~~~L~v~v~   81 (524)
                      .+.|.|+|++|++|+..    .+||||++.+.+       .+++|+++++ ++||.|||+ |.|. +..+ -..|+|+||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            57899999999999753    689999999853       5678999875 699999998 9998 6433 356999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCee
Q 009822           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQV  119 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~i  119 (524)
                      |++    ++|||++.++|..+..+ .++++|.++.|+.
T Consensus       725 D~d----ddfiG~~~ipL~~L~~G-yR~vpL~~~~g~~  757 (816)
T 3qr0_A          725 EEN----GKFIGHRVMPLDGIKPG-YRHVPLRNESNRP  757 (816)
T ss_dssp             ETT----SCEEEEEEEESTTCCCE-EEEEEEECTTSCE
T ss_pred             ecC----CCeeeEEEEEHHHcCCc-ceEEEEeCCCCCC
Confidence            985    78999999999999765 4678998776663

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.91  E-value=8.8e-09  Score=114.92  Aligned_cols=98  Identities=17%  Similarity=0.267  Sum_probs=79.6

Q ss_pred             CceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC------eEEeeeeecC-CCCCcccc-EEEEE-ecCC-CcEEEEEEE
Q 009822           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPG-SRYPMWGE-EFNFS-VDEL-PVQIIVTIY   81 (524)
Q Consensus        12 ~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~------~~~~T~~~~~-t~nP~W~e-~f~f~-v~~~-~~~L~v~v~   81 (524)
                      ....|.|+|++|++|+..    .+||||++.+.+      .+++|+++++ ++||.||| +|.|. +..+ ...|+|+||
T Consensus       723 ~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~  798 (885)
T 3ohm_B          723 VANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAF  798 (885)
T ss_dssp             CCEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             cceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEE
Confidence            356899999999999753    689999999843      2468999976 59999999 69998 6432 346999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        82 d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~  118 (524)
                      |+|    ++|||++.++|..+..+ .++++|.++.|+
T Consensus       799 D~d----ddfiG~~~lpL~~L~~G-yR~vpL~~~~g~  830 (885)
T 3ohm_B          799 EEG----GKFVGHRILPVSAIRSG-YHYVCLRNEANQ  830 (885)
T ss_dssp             ETT----TEEEEEEEEETTTCCCE-EEEEEEECTTSC
T ss_pred             cCC----ccEEeeEEEEHHHcCCC-ceEEEecCCCCC
Confidence            987    78999999999999765 457889876665

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.91  E-value=1e-08  Score=114.27  Aligned_cols=99  Identities=16%  Similarity=0.208  Sum_probs=80.4

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC------eEEeee-eec-CCCCCcccc-EEEE-EecCC-CcEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSS-MVP-GSRYPMWGE-EFNF-SVDEL-PVQIIVT   79 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~------~~~~T~-~~~-~t~nP~W~e-~f~f-~v~~~-~~~L~v~   79 (524)
                      ...+.|.|+|++|++|+.    +.+||||.+.+.+      .+++|+ +++ +++||.||| +|.| .+..+ -..|+|+
T Consensus       675 ~~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~  750 (799)
T 2zkm_X          675 VVATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVA  750 (799)
T ss_dssp             TTCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEE
T ss_pred             eeeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEE
Confidence            346899999999999985    4689999999832      356899 776 469999999 6999 77533 3469999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822           80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        80 v~d~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~  118 (524)
                      |||+|    +++||++.++|..+..+ .+|++|....|.
T Consensus       751 V~D~d----~d~iG~~~ipl~~L~~G-~r~v~L~~~~g~  784 (799)
T 2zkm_X          751 VMEEG----NKFLGHRIIPINALNSG-YHHLCLHSESNM  784 (799)
T ss_dssp             EEETT----TEEEEEEEEEGGGBCCE-EEEEEEECTTCC
T ss_pred             EEEeC----CCccceEeeehhhcCCC-cEEEeccCCCCC
Confidence            99987    78999999999999654 568999876665

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.82  E-value=9.8e-08  Score=79.89  Aligned_cols=108  Identities=13%  Similarity=0.208  Sum_probs=82.4

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeE----Eee-eeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCC
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK----RFS-SMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~----~~T-~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~   87 (524)
                      ...|+|.+.++.--.-+......||||.+.++...    .+| .+.++|..|.||+.|.-.+.+ .+.|.|.|++...  
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~--   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE--   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT--
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC--
Confidence            46788888776532211223468999999986332    244 667789999999999999876 7889999997554  


Q ss_pred             CCceeEEEEEEcccC-------CCcccEEEEecCCCCeeEEEEEEE
Q 009822           88 KSTVLGSVIVTVESE-------GQTGAVWYTLDSPSGQVCLHIKTI  126 (524)
Q Consensus        88 ~d~~iG~~~i~l~~~-------~~~~~~w~~L~~~~G~i~~~l~~~  126 (524)
                        +|++.|+|++.++       +...+.|+.|++ .|++.+.++++
T Consensus        82 --~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP-~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 --EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP-QAKVLMSVQYF  124 (126)
T ss_dssp             --EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-SCEEEEEEEEE
T ss_pred             --CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-CcEEEEEEEEe
Confidence              8999999999977       234578999997 89999888865

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.74  E-value=1.3e-07  Score=80.27  Aligned_cols=113  Identities=11%  Similarity=0.239  Sum_probs=86.0

Q ss_pred             CCCCceEEEEEEEEeecCcCCC-CCCCCCcEEEEEECCe----EEee-eeecCCCCCccccEEEEEecCCCcEEEEEEEE
Q 009822            9 QTNSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGSE----KRFS-SMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD   82 (524)
Q Consensus         9 ~~~~~~~L~V~vi~A~~L~~~d-~~g~~dpyv~v~~~~~----~~~T-~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d   82 (524)
                      ++.-.+.|+|.+.++.-.+-+. .....||||.+.++..    ..+| .+.++|..|.||+.|.-.+.+ .+.|.|.|++
T Consensus         5 ~~~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh   83 (138)
T 2enj_A            5 SSGMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKG   83 (138)
T ss_dssp             CSSCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEEC
T ss_pred             ccccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEc
Confidence            3455678999997776433221 1336899999998643    2456 666778999999999998876 7889999996


Q ss_pred             cCCCCCCceeEEEEEEcccC-------CCcccEEEEecCCCCeeEEEEEEEe
Q 009822           83 WDIIWKSTVLGSVIVTVESE-------GQTGAVWYTLDSPSGQVCLHIKTIK  127 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~-------~~~~~~w~~L~~~~G~i~~~l~~~~  127 (524)
                      ...    +|++.++|++.++       +...+.|+.|++ .|++++.+++..
T Consensus        84 ~a~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP-~Gkl~v~i~~~~  130 (138)
T 2enj_A           84 KNV----DLISETTVELYSLAERCRKNNGKTEIWLELKP-QGRMLMNARYFL  130 (138)
T ss_dssp             SSC----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS-SCEEEEEEEECC
T ss_pred             CCC----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-CcEEEEEEEEEE
Confidence            443    8999999999987       234578999997 899999888763

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=95.36  E-value=0.12  Score=44.41  Aligned_cols=91  Identities=13%  Similarity=0.168  Sum_probs=56.6

Q ss_pred             eeeEEEeecceEEEEeccCcceeEEEEeccccccccccccceecCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeec-
Q 009822          191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWN-  269 (524)
Q Consensus       191 ~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~-  269 (524)
                      -.|++|+|.++|||....- ....+.|||..|..++.....+ ..+.+|++...+...+..+-...-....++-.+|.. 
T Consensus        38 k~G~l~LTshRli~~d~~~-~~~s~~lpl~~v~~~e~~~~~f-~~s~Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~G  115 (140)
T 2hth_B           38 DAGTLLLSTHRLIWRDQKN-HECCMAILLSQIVFIEEQAAGI-GKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEH  115 (140)
T ss_dssp             CCEEEEEESSEEEEEETTC-CSCCEEEEGGGEEEEEEECCTT-SSCCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTS
T ss_pred             cCCEEEEecCEEEEecCCC-CceEEEEEhHHeeeeeeecccc-ccCceEEEEecCCCccCCCCCcccccCcEEEEEEcCC
Confidence            5699999999999987543 4578999999999999988764 334555555433222211111011123566667754 


Q ss_pred             -hHHHHHHHHHHHHh
Q 009822          270 -RNHALRQLQRTAKN  283 (524)
Q Consensus       270 -rd~~~~~l~~~~~~  283 (524)
                       .++-+..|.+.++.
T Consensus       116 g~~eF~~~L~~al~~  130 (140)
T 2hth_B          116 GQIEFYRRLSEEMTQ  130 (140)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHH
Confidence             34555666655544

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=93.79  E-value=0.21  Score=43.16  Aligned_cols=84  Identities=15%  Similarity=0.205  Sum_probs=55.2

Q ss_pred             ceeeEEEeecceEEEEeccCcceeEEEEeccccccccccccceecCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeec
Q 009822          190 LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWN  269 (524)
Q Consensus       190 ~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~  269 (524)
                      .-.|++|+|..+|||-...-.....+.+||..|.+++.....+ ..+++|++...++.         .+ ..++-.+|..
T Consensus        50 ~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~f-g~s~Ki~l~~~p~~---------~~-~~~~KLsFk~  118 (145)
T 2cay_A           50 RQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFL-TRSPRLILFFKDPS---------SS-TEFVQLSFRK  118 (145)
T ss_dssp             CSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSS-SSSCEEEEEESSCS---------ST-TCCEEEEESS
T ss_pred             CCccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCcc-ccCceEEEEecCCC---------CC-ceEEEEEEcC
Confidence            4569999999999998654433378999999999999988764 33567776543321         11 2334445543


Q ss_pred             h--HHHHHHHHHHHHhh
Q 009822          270 R--NHALRQLQRTAKNY  284 (524)
Q Consensus       270 r--d~~~~~l~~~~~~~  284 (524)
                      -  ++-+..|.+.|++.
T Consensus       119 GGa~eF~~~l~~al~~~  135 (145)
T 2cay_A          119 SDGVLFSQATERALENI  135 (145)
T ss_dssp             SCCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHH
Confidence            2  55556666666553

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=93.23  E-value=0.76  Score=42.67  Aligned_cols=149  Identities=11%  Similarity=0.100  Sum_probs=77.8

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeec---cCCCCCceeeEeEEEE
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLC---KSPIYPRDTAMTESQH  415 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~---~~~~gpk~~~~~~~Q~  415 (524)
                      -+..+++++++++|+.++.| ..       .+..+|-.+......+..+..+ .+.|..-.   ..++.|+.--   ..+
T Consensus        69 k~~~~v~~~~~~v~~~~~~d-~~-------~r~~Wd~~~~~~~vle~~~~~t-~I~~~~~~p~~~~~~~~RDfv---~~r  136 (229)
T 1em2_A           69 ILKTFLPCPAELVYQEVILQ-PE-------RMVLWNKTVTACQILQRVEDNT-LISYDVSAGAAGGVVSPRDFV---NVR  136 (229)
T ss_dssp             EEEEEESSCHHHHHHHTTTC-HH-------HHTTTCTTEEEEEEEEEETTTE-EEEEEEECCBTTTTBCCEEEE---EEE
T ss_pred             EEEEEecCCHHHHHHHHHhC-cc-------chhhcccccceEEEEEecCCCe-EEEEEEecCcCCCCcCCCeeE---EEE
Confidence            34667899999999666653 11       2232222121221111111122 24444321   1234444321   122


Q ss_pred             EEecCCCCeEEEEEEEeeCCCCCCCeE-E---EEEEEEEEeeC--CCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHH
Q 009822          416 AVLSPDKKIFVFETVQQAHDVPFGSYF-E---IHGRWHLETIA--ENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKE  489 (524)
Q Consensus       416 ~~~~~~~~~~vv~~~~~~~dVPygd~F-~---v~~r~~i~~~~--~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~  489 (524)
                      .....++.++++..+..-+.+|-...| +   ....|+|.+.+  ++.|+|.....+...+| +-+.++.+.+...+.  
T Consensus       137 ~~~~~~~~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~l~n~~~~~~~~--  213 (229)
T 1em2_A          137 RIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LPRYLIHQSLAATMF--  213 (229)
T ss_dssp             EEEECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SCHHHHHHHHHHHHH--
T ss_pred             EEEEcCCEEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CCHHHHHHHHHHHHH--
Confidence            222224556666666667778854332 2   34679999875  57899999999988775 334555554444444  


Q ss_pred             HHHHHHHHHHHHhhc
Q 009822          490 VELMLETARSYIKIC  504 (524)
Q Consensus       490 ~~~~~~~~~~~l~~~  504 (524)
                        .+++.+++.++..
T Consensus       214 --~~~~~Lr~~~~~~  226 (229)
T 1em2_A          214 --EFAFHLRQRISEL  226 (229)
T ss_dssp             --HHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHh
Confidence              4445555555544

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=93.06  E-value=0.44  Score=44.07  Aligned_cols=146  Identities=10%  Similarity=0.074  Sum_probs=79.7

Q ss_pred             eeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEe-ec--cCCCCCceeeEeEEEEE
Q 009822          340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRS-LC--KSPIYPRDTAMTESQHA  416 (524)
Q Consensus       340 ~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~-~~--~~~~gpk~~~~~~~Q~~  416 (524)
                      +..++++|++++|++|+.| ..       .+..+|-.+......+..+..+ .+.|.. +-  ..++.|+.--+   .+.
T Consensus        59 ~~~~v~~~~~~v~~~l~~d-~~-------~r~~Wd~~~~~~~vle~~~~~t-~I~y~~~~~~~~~~v~~RDfv~---~r~  126 (221)
T 3p0l_A           59 LEVVVDQPMERLYEELVER-ME-------AMGEWNPNVKEIKVLQKIGKDT-FITHELAAEAAGNLVGPRDFVS---VRC  126 (221)
T ss_dssp             EEEEESSCHHHHHHHHTTT-GG-------GTTTSCTTCSEEEEEEECSSSE-EEEEEEECC---CCSCCEEEEE---EEE
T ss_pred             EEEEEcCCHHHHHHHHHhc-cc-------hhhhcCcchheEEEEEecCCCe-EEEEEeeccccCCccCCceEEE---EEE
Confidence            4567899999999999863 21       1232222222222111111223 344543 21  12445543222   111


Q ss_pred             EecCCCCeEEEEEEEeeCCCCCCCe-EEE---EEEEEEEeeCCC--CeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHH
Q 009822          417 VLSPDKKIFVFETVQQAHDVPFGSY-FEI---HGRWHLETIAEN--SSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEV  490 (524)
Q Consensus       417 ~~~~~~~~~vv~~~~~~~dVPygd~-F~v---~~r~~i~~~~~~--~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~  490 (524)
                      ....++.++++..+..-+.+|-... -++   ...|+|++.+++  +|+|.....+...+| +-++++.+.+...+.+  
T Consensus       127 ~~~~~~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~--  203 (221)
T 3p0l_A          127 AKRRGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVD--  203 (221)
T ss_dssp             EEECSSCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS-CCHHHHHHHHHHHHHH--
T ss_pred             EEEcCCeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC-CCHHHHHHHHHHHHHH--
Confidence            2223455666656666677776443 333   467999999865  899999999988766 4455555554455444  


Q ss_pred             HHHHHHHHHHHh
Q 009822          491 ELMLETARSYIK  502 (524)
Q Consensus       491 ~~~~~~~~~~l~  502 (524)
                        +++.+++.++
T Consensus       204 --~~~~Lr~~~~  213 (221)
T 3p0l_A          204 --FANHLRKRLE  213 (221)
T ss_dssp             --HHHHHHHHTC
T ss_pred             --HHHHHHHHHh
Confidence              4555555555

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=93.02  E-value=2.2  Score=36.71  Aligned_cols=144  Identities=10%  Similarity=0.014  Sum_probs=74.0

Q ss_pred             ceeeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEE
Q 009822          337 VGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA  416 (524)
Q Consensus       337 ~~~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~  416 (524)
                      +.-...+++.|++++|.++-+  ...+.+++-  +...+..     .++ +..    .+...  ..+||-.......-++
T Consensus         4 ~i~~~~~i~ap~e~Vw~~l~D--~e~~~~w~p--~~~~~~~-----~~~-~~~----~~~~~--~~~g~~~~~~~~~~~~   67 (162)
T 2pcs_A            4 NGNGSIELKGTVEEVWSKLMD--PSILSKCIM--GCKSLEL-----IGE-DKY----KADLQ--IGIAAVKGKYDAIIEV   67 (162)
T ss_dssp             EEEEEEEEESCHHHHHHHHTC--HHHHHHHST--TEEEEEE-----EET-TEE----EEEEE--ECCGGGCEEEEEEEEE
T ss_pred             EEeeEEEecCCHHHHHHHhcC--HHHHHhhCC--CceEeEE-----eCC-CeE----EEEEE--EEeeeEEEEEEEEEEE
Confidence            344567899999999999843  444554432  1111211     111 211    12211  2234432222222122


Q ss_pred             EecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeee--ceeeeeeeccHHHHHHHHHHHHH
Q 009822          417 VLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKW--CVIQFKIKTGAVNKYKKEVELML  494 (524)
Q Consensus       417 ~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~--t~~K~~Ie~~~~~~~~~~~~~~~  494 (524)
                      ........+.+.....- +   +..+.....|.|+..++++|+|.+...+.+...  .++..++..    -.+...++++
T Consensus        68 ~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~l~~~~~~gT~v~~~~~~~~~g~l~~~~~~l~~~----~~~~~~~~~~  139 (162)
T 2pcs_A           68 TDIKPPYHYKLLVNGEG-G---PGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGG----VAKLLISDFF  139 (162)
T ss_dssp             EEEETTTEEEEEEEEEE-T---TEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHH----HHHHHHHHHH
T ss_pred             EecCCCcEEEEEEEecC-C---CccEEEEEEEEEEecCCCcEEEEEEEEEEECCCHHHhhHHHHHH----HHHHHHHHHH
Confidence            22222346666554321 1   234467889999986667899999988887542  222222222    2334456677


Q ss_pred             HHHHHHHhhc
Q 009822          495 ETARSYIKIC  504 (524)
Q Consensus       495 ~~~~~~l~~~  504 (524)
                      +.+++.++..
T Consensus       140 ~~lk~~~e~~  149 (162)
T 2pcs_A          140 KKIQKEIAKS  149 (162)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHhccc
Confidence            7777777643

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=91.46  E-value=5.2  Score=33.91  Aligned_cols=142  Identities=8%  Similarity=-0.057  Sum_probs=72.6

Q ss_pred             ceeeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEE
Q 009822          337 VGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA  416 (524)
Q Consensus       337 ~~~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~  416 (524)
                      ..-...+++.|++++|.++-+  ...+.+++-  +.     ..+. ..+ + .   +.+...  ..+||-.......-++
T Consensus        14 ~i~~~~~i~ap~e~Vw~~l~D--~~~~~~w~p--~~-----~~~~-~~~-~-~---~~~~~~--~~~g~~~~~~~~~~~~   76 (157)
T 2ns9_A           14 RYEGSFEVSKTPEEVFEFLTD--PKRFSRAFP--GF-----KSVE-VED-G-S---FTIELR--LSLGPLRGDARVRASF   76 (157)
T ss_dssp             EEEEEEEESSCHHHHHHHHTC--HHHHGGGST--TE-----EEEE-EET-T-E---EEEEEE--EESSSSEEEEEEEEEE
T ss_pred             EEeeEEEEcCCHHHHHHHHcC--HHHHHhhCC--Cc-----eEEE-ECC-C-E---EEEEEE--EEEcceeEEEEEEEEE
Confidence            345577899999999998843  333333321  11     1122 111 2 1   223322  2245533222222233


Q ss_pred             EecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHH
Q 009822          417 VLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET  496 (524)
Q Consensus       417 ~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~  496 (524)
                      ........+++....  .+  .+..|.....|.++..+ ++|+|.+...+++...  +..++..-...-....++++++.
T Consensus        77 ~~~~~~~~i~~~~~~--~~--~~~~~~~~~~~~l~~~~-~gT~v~~~~~~~~~g~--l~~~~~~~~~~~~~~~~~~~~~~  149 (157)
T 2ns9_A           77 EDLEKPSKATVKGSG--RG--AGSTLDFTLRFAVEPSG-GGSRVSWVFEGNVGGL--AASMGGRVLDSLARRMINDVISG  149 (157)
T ss_dssp             EEEETTTEEEEEEEE--EC--SSEEEEEEEEEEEEEET-TEEEEEEEEEEEEEEG--GGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCcEEEEEEEe--cC--CCccEEEEEEEEEEeCC-CcEEEEEEEEEEECcC--HHHhhHHHHHHHHHHHHHHHHHH
Confidence            222233456654332  12  12357778899999987 7899999988887541  22222221122233356666666


Q ss_pred             HHHHHh
Q 009822          497 ARSYIK  502 (524)
Q Consensus       497 ~~~~l~  502 (524)
                      +++.++
T Consensus       150 lk~~~e  155 (157)
T 2ns9_A          150 VKRELG  155 (157)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            666654

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=90.73  E-value=1.7  Score=40.30  Aligned_cols=150  Identities=10%  Similarity=-0.007  Sum_probs=79.0

Q ss_pred             eeeeEEecCHHHHHHHH--cCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeecc---CCCCCceeeEeEE
Q 009822          339 IYNDVFPCTAEQFFTLL--FSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK---SPIYPRDTAMTES  413 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~l--f~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~---~~~gpk~~~~~~~  413 (524)
                      -...+++++++++|+++  +.  .....++........+.    ...++   .+ .+.|.....   .++.|+.--+.. 
T Consensus        70 k~~~~v~~~~~~v~~~l~~~d--~~~r~~Wd~~~~~~~vl----e~i~~---~~-~i~~~~~~~~~~~~v~~RDfv~~r-  138 (231)
T 2r55_A           70 RGEGIVYGTLEEVWDCVKPAV--GGLRVKWDENVTGFEII----QSITD---TL-CVSRTSTPSAAMKLISPRDFVDLV-  138 (231)
T ss_dssp             EEEEEESSCHHHHHHHHCC----CCSHHHHCTTCSEEEEE----EECSS---SE-EEEEEECCCBTTTTBCCEEEEEEE-
T ss_pred             EEEEEECCCHHHHHHHHHhhC--cchhhhhccccceeEEE----EEcCC---CE-EEEEEEeccccCCccCCCeEEEEE-
Confidence            34667899999999999  73  33333332222221111    11111   12 233432111   123333311111 


Q ss_pred             EEEEecCCCCeEEEEEEEeeCCCCCCCe-EEEE---EEEEEEeeC--CCCeEEEEEEEEEEeeeceeeeeeeccHHHHHH
Q 009822          414 QHAVLSPDKKIFVFETVQQAHDVPFGSY-FEIH---GRWHLETIA--ENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYK  487 (524)
Q Consensus       414 Q~~~~~~~~~~~vv~~~~~~~dVPygd~-F~v~---~r~~i~~~~--~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~  487 (524)
                       ......++.++++..+..-+.+|-... -+++   ..|+|.+..  +++|+|.....++...|. -+.++.+.+..+  
T Consensus       139 -~~~~~~~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~i-P~~lvn~~~~~~--  214 (231)
T 2r55_A          139 -LVKRYEDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGYL-PQNVVDSFFPRS--  214 (231)
T ss_dssp             -EEEECTTSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSSC-CHHHHHHHHHHH--
T ss_pred             -EEEEcCCCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCCc-cHHHHHHHHhHh--
Confidence             122234455666677766777875433 3443   468999875  678999999999887653 244555443334  


Q ss_pred             HHHHHHHHHHHHHHhhcC
Q 009822          488 KEVELMLETARSYIKICT  505 (524)
Q Consensus       488 ~~~~~~~~~~~~~l~~~~  505 (524)
                        .-.+++.+++.++.++
T Consensus       215 --~~~~~~~Lr~~~~~~~  230 (231)
T 2r55_A          215 --MTRFYANLQKAVKQFH  230 (231)
T ss_dssp             --HHHHHHHHHHHHHGGG
T ss_pred             --HHHHHHHHHHHHHHhc
Confidence              4556666666666654

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=90.25  E-value=3.3  Score=37.64  Aligned_cols=149  Identities=12%  Similarity=0.086  Sum_probs=79.2

Q ss_pred             eeeeEEe-cCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEE
Q 009822          339 IYNDVFP-CTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  417 (524)
Q Consensus       339 ~~~~~~~-~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  417 (524)
                      -...+++ ++++++|+++..  .....++........+.    ..  + +  ...+.+....-.|+.++.--+... ...
T Consensus        55 k~~~~i~~~~~~~v~~~l~d--~~~r~~Wd~~~~~~~vl----e~--~-~--~~i~~~~~~~p~p~~~RD~v~~~~-~~~  122 (214)
T 1ln1_A           55 KVFGVLEDCSPTLLADIYMD--SDYRKQWDQYVKELYEQ----EC--N-G--ETVVYWEVKYPFPMSNRDYVYLRQ-RRD  122 (214)
T ss_dssp             EEEEEETTSCHHHHHHHHHC--HHHHHHHCTTEEEEEEE----EE--T-T--EEEEEEEECCCTTSCCEEEEEEEE-EEE
T ss_pred             EEEEEECCCCHHHHHHHHcC--HHHHHHHHHHHhhEEEe----cc--C-C--CEEEEEEEEcCCCCCCceEEEEEE-EEe
Confidence            4577895 999999999875  23333333333322221    11  1 2  233333333223454443222111 112


Q ss_pred             ecCCCC-e-EEEEEEEeeCCCCCCCeE----EEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHH
Q 009822          418 LSPDKK-I-FVFETVQQAHDVPFGSYF----EIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVE  491 (524)
Q Consensus       418 ~~~~~~-~-~vv~~~~~~~dVPygd~F----~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~  491 (524)
                      ...++. . +++..+..-+++|-...|    .....|+|++.++++|++.....+....+ +-+.++.+.+...    ..
T Consensus       123 ~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~G~-iP~~l~n~~~~~~----~~  197 (214)
T 1ln1_A          123 LDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ-IPSWLINWAAKNG----VP  197 (214)
T ss_dssp             ECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSC-CCHHHHHHHHHTH----HH
T ss_pred             cccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCCCc-ccHHHHHHHHHHH----hH
Confidence            222443 3 455555666778854433    35678999999888999999999887643 2333333333333    44


Q ss_pred             HHHHHHHHHHhhc
Q 009822          492 LMLETARSYIKIC  504 (524)
Q Consensus       492 ~~~~~~~~~l~~~  504 (524)
                      .+++.+++.++.+
T Consensus       198 ~~l~~l~k~~~~y  210 (214)
T 1ln1_A          198 NFLKDMARACQNY  210 (214)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            4555555555544

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=89.91  E-value=2.2  Score=38.07  Aligned_cols=143  Identities=10%  Similarity=0.074  Sum_probs=73.4

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEe
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  418 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  418 (524)
                      -...+++.|++++|+++..  .....++...+....+...    .   ++ ...+.+....-.|+.++..  ........
T Consensus        30 k~~~~v~~s~~~v~~~l~D--~~~~~~W~~~~~~~~vle~----~---~~-~~i~y~~~~~p~p~~~RD~--v~~~~~~~   97 (189)
T 3qsz_A           30 RGEVRLKAAADDVVKVLRD--ANAFRQWMPDVAASELLKA----T---DT-EQYHYLDNSAPWPVSNRDG--VYHFTYEK   97 (189)
T ss_dssp             EEEEEESSCHHHHHHHHHC--GGGGGGTSTTEEEEEEEEE----C---SS-EEEEEEEECCSSSCCCEEE--EEEEEEEE
T ss_pred             EEEEEEECCHHHHHHHHHh--HHHhhhHHHhcCEEEEEee----c---CC-ceEEEEEeecCCCcCCcce--EEEEEEEE
Confidence            4567889999999998754  3333333333332222211    1   11 2222222221123444321  11112223


Q ss_pred             cCCCCeEEEEEEEeeCCCCCCCe----EEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHH
Q 009822          419 SPDKKIFVFETVQQAHDVPFGSY----FEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELML  494 (524)
Q Consensus       419 ~~~~~~~vv~~~~~~~dVPygd~----F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~  494 (524)
                      ..++ .++|......+.+|-...    ......|+|++ ++++|+|.....++...+ +-+.++.+.+.......++.+-
T Consensus        98 ~~~g-~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G~-iP~~lvn~~~~~~~~~~l~~L~  174 (189)
T 3qsz_A           98 AGDG-AITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGGS-IPSWLANQTVVETPFGTLKALR  174 (189)
T ss_dssp             CTTS-CEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCSS-SCHHHHHHTTTHHHHHHHHHHH
T ss_pred             CCCC-eEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            3344 445544444455664322    23468899999 888999999999988653 3455555555555444444443


Q ss_pred             HH
Q 009822          495 ET  496 (524)
Q Consensus       495 ~~  496 (524)
                      +.
T Consensus       175 k~  176 (189)
T 3qsz_A          175 SH  176 (189)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=88.90  E-value=1.2  Score=41.85  Aligned_cols=80  Identities=6%  Similarity=0.022  Sum_probs=51.4

Q ss_pred             CCCCeEEEEEEEeeCCCCCCC---eEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHH
Q 009822          420 PDKKIFVFETVQQAHDVPFGS---YFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET  496 (524)
Q Consensus       420 ~~~~~~vv~~~~~~~dVPygd---~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~  496 (524)
                      .++.++++..+..-+++|-.+   .......|.|++.++++|+|.....+...+|.  =..+ +.+..   ...-..+..
T Consensus       147 ~~g~~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~G~i--P~~l-n~~~~---~~~~~~l~~  220 (237)
T 2pso_A          147 PKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLKGHS--PEWY-SKGFG---HLCAAEVAR  220 (237)
T ss_dssp             GGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCSSSC--TTTT-TTHHH---HHHHHHHHH
T ss_pred             CCCEEEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCCCCEEEEEEEEeCCCCCc--hHHH-HHHHH---HHHHHHHHH
Confidence            346677777676667888663   22346899999999999999999999887542  2223 33222   222345666


Q ss_pred             HHHHHhhcC
Q 009822          497 ARSYIKICT  505 (524)
Q Consensus       497 ~~~~l~~~~  505 (524)
                      +++.++...
T Consensus       221 LR~~~~~~~  229 (237)
T 2pso_A          221 IRNSFQPLI  229 (237)
T ss_dssp             HHHTTSCC-
T ss_pred             HHHHHHhhc
Confidence            777766543

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=88.74  E-value=12  Score=34.39  Aligned_cols=55  Identities=11%  Similarity=0.061  Sum_probs=39.8

Q ss_pred             EeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcCCC----CCCceeEEEEEEcccC
Q 009822           48 RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII----WKSTVLGSVIVTVESE  102 (524)
Q Consensus        48 ~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d~~----~~d~~iG~~~i~l~~~  102 (524)
                      .+|-+...+.+|.|+|++.+.+..   ....|.|++++...-    ..+..+|.+.++|-..
T Consensus        79 ~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~~  140 (220)
T 3l4c_A           79 YKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRY  140 (220)
T ss_dssp             EECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBCT
T ss_pred             EEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcccC
Confidence            356777788999999999999864   244599999875421    1234678888887755

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=88.58  E-value=10  Score=32.81  Aligned_cols=144  Identities=14%  Similarity=0.114  Sum_probs=79.0

Q ss_pred             eeeEEecCHHHHHHHHcCCCCchHHHHH-HHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEe
Q 009822          340 YNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  418 (524)
Q Consensus       340 ~~~~~~~s~~~lf~~lf~d~s~f~~~~~-~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  418 (524)
                      .+-+.++|+++||+++..|...++.+.+ ...+..++ .+.|.     .+..|.++|..     -|| ...  .++++..
T Consensus         8 ~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~v-eGdg~-----~Gsir~~t~~~-----g~~-~~~--~kErle~   73 (154)
T 2wql_A            8 LEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGG-----AGTVRIITLPE-----GSP-ITT--MTVRTDA   73 (154)
T ss_dssp             EEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEEE-ESSSS-----TTCEEEEECCT-----TCS-CCE--EEEEEEE
T ss_pred             EEEEecCCHHHHHHHHhhcccccchhhcccceeEEEE-ECCCC-----CCeEEEEEEcC-----CCC-ceE--EEEEEEE
Confidence            3566789999999999886444444443 23333332 33332     35679888742     233 222  2355664


Q ss_pred             -cCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHH
Q 009822          419 -SPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETA  497 (524)
Q Consensus       419 -~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~  497 (524)
                       ..++..|....  .--|+.-..+=+......+.+.++++|.+..  .+.|.+-.  -..+.-...+..++.+..+++.+
T Consensus        74 iD~~~~~~~y~i--ieGd~l~~~~~~~~~~ikv~p~~~ggsvvk~--t~~Y~~~~--~~~~~ee~~~~~~~~~~~~~Kai  147 (154)
T 2wql_A           74 VNKEALSYDSTV--IDGDILLGFIESIETHMVVVPTADGGSITKT--TAIFHTKG--DAVVPEENIKFADAQNTALFKAI  147 (154)
T ss_dssp             EETTTTEEEEEE--EESGGGTTTEEEEEEEEEEEECTTSCEEEEE--EEEEEEST--TCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EehhhCEEEEEE--EeccccccceEEEEEEEEEeeCCCCcEEEEE--EEEEEECC--CCCCCHHHHHHHHHHHHhHHHHH
Confidence             33343443332  3344432333344566777777777886554  46676521  11223333445566677788888


Q ss_pred             HHHHhh
Q 009822          498 RSYIKI  503 (524)
Q Consensus       498 ~~~l~~  503 (524)
                      +.+|-.
T Consensus       148 EayLla  153 (154)
T 2wql_A          148 EAYLIA  153 (154)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            888754

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=88.46  E-value=11  Score=32.35  Aligned_cols=147  Identities=8%  Similarity=0.056  Sum_probs=82.3

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEE-
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV-  417 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~-  417 (524)
                      ..+.+.++|++++|.++-.|-...+.+++......++..+.|.     .+..|.++|. +     |.....+  ++++. 
T Consensus         6 ~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~-----~Gsir~~~~~-~-----G~~~~~~--kErl~~   72 (155)
T 1icx_A            6 ENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGG-----PGTIKKIIAI-H-----DGHTSFV--LHKLDA   72 (155)
T ss_dssp             EEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSS-----TTCEEEEEEE-S-----SSSEEEE--EEEEEE
T ss_pred             EEEEEecCCHHHHHHHHhcCcchhcchhhhhccEEEEEecCCC-----CCeEEEEEEe-c-----CCcceeE--EEEEEE
Confidence            4567889999999999863222234555544455555667762     2567999886 1     3222223  33444 


Q ss_pred             ecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHH
Q 009822          418 LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETA  497 (524)
Q Consensus       418 ~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~  497 (524)
                      ...++..|..... . -|+.-...=+....|.+.+.++++|.+..  .++|.+..-.   ..-...+..++.+..+++.+
T Consensus        73 ~D~~~~~~~y~ii-e-Gd~~~~~~~~~~~~~~v~~~~~~gs~v~w--~~~y~~~~~~---~~~~~~~~~~~~~~~~~k~i  145 (155)
T 1icx_A           73 IDEANLTYNYSII-G-GEGLDESLEKISYESKILPGPDGGSIGKI--NVKFHTKGDV---LSETVRDQAKFKGLGLFKAI  145 (155)
T ss_dssp             EEGGGTEEEEEEE-E-ETTSCTTEEEEEEEEEEEECGGGCEEEEE--EEEEEESSSS---CCHHHHTTHHHHHHHHHHHH
T ss_pred             EeccCCEEEEEEE-e-cCCCccceEEEEEEEEEEecCCCCEEEEE--EEEEEECCCC---CCHHHHHHHHHHHHHHHHHH
Confidence            3333444444332 2 23221123334566777777655676544  4556543211   22223334478899999999


Q ss_pred             HHHHhhcC
Q 009822          498 RSYIKICT  505 (524)
Q Consensus       498 ~~~l~~~~  505 (524)
                      +++|..+.
T Consensus       146 e~yll~~p  153 (155)
T 1icx_A          146 EGYVLAHP  153 (155)
T ss_dssp             HHHHHHCT
T ss_pred             HHHHHhCC
Confidence            99998774

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=87.78  E-value=2.6  Score=44.15  Aligned_cols=74  Identities=16%  Similarity=0.156  Sum_probs=49.6

Q ss_pred             ccCcccceEEeeeee-eee--ccceeeEEEeecceEEEEeccCcceeEEEEeccccccccccccc--ee--cCcEEEEEe
Q 009822          170 NLLPDEFVELSYSCV-IER--SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA--FI--NPAITIILR  242 (524)
Q Consensus       170 ~lp~~e~l~~~~~c~-l~~--~~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~--~~--~~~i~i~~~  242 (524)
                      .|-++|.++....-. +..  .-...|.||+|+.+|.|.+..-.....+-||+.-|..|+|..+.  ..  ...|.|.++
T Consensus         8 ~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~~vek~~~~s~~~~~~~~l~I~CK   87 (528)
T 1zsq_A            8 PLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCK   87 (528)
T ss_dssp             CCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEET
T ss_pred             ccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCCccEEEEeeccceEEEEEcCCCCcCCCCCceEEEEcc
Confidence            455677666442221 111  23688999999999999986433345688999999999986532  11  126899986


Q ss_pred             c
Q 009822          243 M  243 (524)
Q Consensus       243 ~  243 (524)
                      +
T Consensus        88 D   88 (528)
T 1zsq_A           88 D   88 (528)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=87.51  E-value=3.5  Score=37.96  Aligned_cols=146  Identities=8%  Similarity=0.105  Sum_probs=72.5

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCC--CCCceeeEeEEEEE
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSP--IYPRDTAMTESQHA  416 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~--~gpk~~~~~~~Q~~  416 (524)
                      -+..++++|++++|++++...  .-.++     +.++..  ....+..+..+..+-|..+...+  +.|+.--+..  ..
T Consensus        70 k~~~~v~~~~~~v~~~l~d~~--~r~~W-----d~~~~~--~~vle~id~~~~I~y~~~~~~~~~~v~~RDfv~~r--~~  138 (224)
T 1jss_A           70 KAQGVMDDVVNNVIDHIRPGP--WRLDW-----DRLMTS--LDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFS--YT  138 (224)
T ss_dssp             EEEEEESSCHHHHHHHHSSST--THHHH-----CSSEEE--EEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEEE--EE
T ss_pred             EEEEEEeCCHHHHHHHHhCcc--ccccc-----ccceee--EEEEEEcCCCeEEEEEEcccccCCCCCCCeEEEEE--EE
Confidence            346778999999999997632  11221     111111  11111111223333333322111  3444321111  12


Q ss_pred             EecCCCCeEEEEEEEeeCCCCCCCeEEEE---EEEEEEeeCC--CCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHH
Q 009822          417 VLSPDKKIFVFETVQQAHDVPFGSYFEIH---GRWHLETIAE--NSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVE  491 (524)
Q Consensus       417 ~~~~~~~~~vv~~~~~~~dVPygd~F~v~---~r~~i~~~~~--~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~  491 (524)
                      ... ++.++++..+..-++.| .++=+++   ..|+|++..+  ++|+|...+.+...+|. -++++.+.+...    .-
T Consensus       139 ~~~-~~~~vi~~~Sv~hp~~~-~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~i-P~~lvn~~~~~~----~~  211 (224)
T 1jss_A          139 VGY-EEGLLSCGVSVEWSETR-PEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMI-PQSAVDTAMAST----LA  211 (224)
T ss_dssp             EEE-TTEEEEEEEECCCCCCC-TTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSCC-CHHHHHHHHHHH----HH
T ss_pred             EEc-CCeEEEEEeeeecCCCC-CCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCCc-cHHHHHHHHHHh----HH
Confidence            223 33345544444446665 3555544   6799999865  48999988888887652 344454443333    34


Q ss_pred             HHHHHHHHHHh
Q 009822          492 LMLETARSYIK  502 (524)
Q Consensus       492 ~~~~~~~~~l~  502 (524)
                      .+++.+++.++
T Consensus       212 ~~~~~Lr~~~~  222 (224)
T 1jss_A          212 NFYSDLRKGLR  222 (224)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            44444555443

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=87.13  E-value=2.9  Score=44.78  Aligned_cols=75  Identities=16%  Similarity=0.138  Sum_probs=50.4

Q ss_pred             cccCcccceEEeeeee-eee--ccceeeEEEeecceEEEEeccCcceeEEEEeccccccccccccc--ee--cCcEEEEE
Q 009822          169 FNLLPDEFVELSYSCV-IER--SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA--FI--NPAITIIL  241 (524)
Q Consensus       169 F~lp~~e~l~~~~~c~-l~~--~~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~--~~--~~~i~i~~  241 (524)
                      |.+-++|.++....-. +..  .-.+.|.||||+.+|.|.+..-.....+-||+.-|..|+|..+.  ..  ...|.|.+
T Consensus        79 ~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~C  158 (657)
T 1lw3_A           79 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVC  158 (657)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEE
T ss_pred             CccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCCcceEEEecccceEEEEecCCCcccCCCCceEEEEe
Confidence            4556777776543221 111  23588999999999999986433345688999999999986432  11  12688998


Q ss_pred             ec
Q 009822          242 RM  243 (524)
Q Consensus       242 ~~  243 (524)
                      ++
T Consensus       159 KD  160 (657)
T 1lw3_A          159 KD  160 (657)
T ss_dssp             TT
T ss_pred             cC
Confidence            64

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=86.49  E-value=15  Score=31.65  Aligned_cols=147  Identities=10%  Similarity=0.043  Sum_probs=82.7

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEE-
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV-  417 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~-  417 (524)
                      ..+.+.++|++++|.++-.|-...+.+++...+..++..+.|.     .+..|.++|. +     |.....+  ++++. 
T Consensus         7 ~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eGdgg-----~Gsir~~~~~-~-----g~~~~~~--kErl~~   73 (158)
T 2qim_A            7 QDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGG-----PGTIKKLTFI-E-----GGESKYV--LHKIEA   73 (158)
T ss_dssp             EEEEEESSCHHHHHHHHTTTHHHHHHHHCTTEEEEEEEESSSS-----TTCEEEEEEE-E-----TTEEEEE--EEEEEE
T ss_pred             EEEEEecCCHHHHHHHHhcCccchhhhHHhhCcEEEEEecCCC-----CCeEEEEEEc-C-----CCcceeE--EEEEEE
Confidence            4577899999999999863222234555544445555667762     2567999886 2     3222223  33444 


Q ss_pred             ecCCCCeEEEEEEEeeCCCCCCC-eEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHH
Q 009822          418 LSPDKKIFVFETVQQAHDVPFGS-YFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET  496 (524)
Q Consensus       418 ~~~~~~~~vv~~~~~~~dVPygd-~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~  496 (524)
                      ...++..|..... . -++ ..+ .=+....|.+.+.++++|.+..  .++|.+..  -....-...+..++.+..+++.
T Consensus        74 ~D~~~~~~~y~ii-e-G~~-~~~~~~~~~~~~~v~~~~~~gs~v~w--t~~y~~~~--~~~~~~~~~~~~~~~~~~~~k~  146 (158)
T 2qim_A           74 IDEANLGYNYSIV-G-GVG-LPDTIEKISFETKLVEGANGGSIGKV--TIKIETKG--DAQPNEEEGKAAKARGDAFFKA  146 (158)
T ss_dssp             EEGGGTEEEEEEE-E-ESS-CCCSEEEEEEEEEEEECSTTCEEEEE--EEEEEEST--TCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCEEEEEEE-e-ccC-CccceEEEEEEEEEEecCCCCEEEEE--EEEEEECC--CCCCCHHHHHHHHHHHHHHHHH
Confidence            3333444444332 2 222 222 2334567777887666776554  45555421  1111222333457889999999


Q ss_pred             HHHHHhhcC
Q 009822          497 ARSYIKICT  505 (524)
Q Consensus       497 ~~~~l~~~~  505 (524)
                      ++++|..+.
T Consensus       147 ie~yll~~p  155 (158)
T 2qim_A          147 IESYLSAHP  155 (158)
T ss_dssp             HHHHHHHCS
T ss_pred             HHHHHHhCc
Confidence            999998764

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=85.91  E-value=1.4  Score=45.90  Aligned_cols=52  Identities=17%  Similarity=0.208  Sum_probs=39.4

Q ss_pred             cceeeEEEeecceEEEEeccCcceeEEEEeccccccccccccceecCcEEEEEec
Q 009822          189 FLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRM  243 (524)
Q Consensus       189 ~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~  243 (524)
                      ....|.||+|+.||.|.+.   ....+-||+.-|..|+|.....-...|.|.+++
T Consensus        23 ~~~~GtL~lTn~~LiF~~~---~~~e~wi~~~~I~~VeK~~~~~~~~~l~I~CKD   74 (512)
T 2yf0_A           23 KSLTGTLYLTATHLLFIDS---HQKETWILHHHIASVEKLALTTSGCPLVIQCKN   74 (512)
T ss_dssp             -CCEEEEEECSSEEEEEES---SSCEEEEEGGGEEEEEECCCBTTBEEEEEEETT
T ss_pred             CceeEEEEEECCEEEEeCC---CCCceEecccceeEEEEecCCCCCceEEEEecC
Confidence            4678999999999999993   234578999999999987543212368888864

>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B

Probab=85.33  E-value=3.4  Score=33.41  Aligned_cols=93  Identities=15%  Similarity=0.284  Sum_probs=59.1

Q ss_pred             cccceEEeeeeeeeeccceeeEEEeecceEEEEeccCcceeEEEEeccccccccccccceecC--cEEEEEecCCCCCCC
Q 009822          173 PDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP--AITIILRMGAGGHGV  250 (524)
Q Consensus       173 ~~e~l~~~~~c~l~~~~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~--~i~i~~~~~~~~~~~  250 (524)
                      .+|.|+......+.+.   .|.||++..+|-+-.+. +-.-.+.+++.+|...+-++..  .+  -++|..+.+      
T Consensus         5 ~~~~ll~v~~v~yKK~---dGtL~l~~d~i~W~p~~-~~~~~vs~~~~~I~~qq~SP~~--k~KVqLqi~l~~~------   72 (108)
T 1pfj_A            5 SEEVLLIVKKVRQKKQ---DGALYLMAERIAWAPEG-KDRFTISHMYADIKCQKISPEG--KAKIQLQLVLHAG------   72 (108)
T ss_dssp             SCCEEEEESCCBCSSC---BCEEEEETTEEEEECSS-SSSCSEEEETTTCCCEEECCSS--SSSCEEEEECSSS------
T ss_pred             chheeEEehhheeecC---CceEEEEcceEEEccCC-CCCceEEEehhhhhcceeCCCC--CccEEEEEEEeCC------
Confidence            3455555555555432   39999999999988754 3566777899999986654433  22  456666532      


Q ss_pred             CCCCCCCCceeEEEeeee----chHHHHHHHHHHHHhh
Q 009822          251 PPLGSPDGRVRYKFASFW----NRNHALRQLQRTAKNY  284 (524)
Q Consensus       251 ~~~~~~~~~~~~~f~sf~----~rd~~~~~l~~~~~~~  284 (524)
                             +...|.|++=.    .||..=++|..++...
T Consensus        73 -------~~~~F~Ftn~~~a~~erd~VKd~L~~~l~~~  103 (108)
T 1pfj_A           73 -------DTTNFHFSNESTAVKERDAVKDLLQQLLPKF  103 (108)
T ss_dssp             -------CEEEEECCCSSCTTHHHHHHHHHHHHHHHHH
T ss_pred             -------CceEEEEcCcHHHHHHHHHHHHHHHHHHHHH
Confidence                   45566777642    2455557777776553

>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A

Probab=84.22  E-value=1.6  Score=44.12  Aligned_cols=68  Identities=19%  Similarity=0.241  Sum_probs=49.2

Q ss_pred             ceEEeeeeeeee-ccceeeEEEeecceEEEEecc----Cc----------ceeEEEEeccccccccccccceecCcEEEE
Q 009822          176 FVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA----FS----------RQMKVIIPIGDIDEIQRSQHAFINPAITII  240 (524)
Q Consensus       176 ~l~~~~~c~l~~-~~~~~Gr~yit~~~~cF~s~~----~g----------~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~  240 (524)
                      .++-++.|.+.. .....|++.||...|+|....    +.          ......+++++|..|-+..-.+-..||+|.
T Consensus         2 ~v~~~~~~~~i~p~~~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~~Rryll~~~alEif   81 (414)
T 1t77_A            2 PVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIF   81 (414)
T ss_dssp             CCSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred             CEEEEEEEEEEeeecceeeEEEEeCCEEEEEeCCCcccccccccchhccccCcceEecchheeeeeeeeccCcceeEEEE
Confidence            456678888766 677899999999999999531    10          011236889999999876655434599999


Q ss_pred             Eec
Q 009822          241 LRM  243 (524)
Q Consensus       241 ~~~  243 (524)
                      +..
T Consensus        82 ~~~   84 (414)
T 1t77_A           82 MAN   84 (414)
T ss_dssp             ETT
T ss_pred             EcC
Confidence            964

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=83.04  E-value=22  Score=30.70  Aligned_cols=149  Identities=11%  Similarity=0.163  Sum_probs=82.7

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHH-HHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEE
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  417 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~-~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  417 (524)
                      -.+.+.++|++++|.++..|-...+.+.+ ...+..++..+.|.     .+..|.++|.     +-+| ...  .++++.
T Consensus         6 ~~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGdgg-----~Gsir~~~~~-----~g~~-~~~--~kErl~   72 (159)
T 4a8u_A            6 ETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGG-----PGTIKKISFP-----EGFP-FKY--VKDRVD   72 (159)
T ss_dssp             EEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSS-----TTCEEEEECC-----TTSS-CSE--EEEEEE
T ss_pred             EEEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCCCC-----CceEEEEEEe-----cCCC-ccE--EEEEEE
Confidence            34677899999999999664223334444 23455556677773     2567988875     1233 223  334455


Q ss_pred             -ecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHH
Q 009822          418 -LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET  496 (524)
Q Consensus       418 -~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~  496 (524)
                       ...++..|.....  -.|++-...=.....+.+.+.++++|.+.  +..+|.+-.  -..+.-...+..++.+..+++.
T Consensus        73 ~iD~~~~~~~y~ii--egd~l~~~~~~y~~ti~v~p~~~ggs~v~--wt~~y~~~~--~~~~~~~~~k~~~~~~~~~~k~  146 (159)
T 4a8u_A           73 EVDHTNFKYSYSVI--EGGPVGDTLEKISNEIKIVATPNGGSILK--INNKYHTKG--DHEVKAEQIKASKEMGETLLRA  146 (159)
T ss_dssp             EEETTTTEEEEEEE--EETTCBTTEEEEEEEEEEEECTTSCEEEE--EEEEEEESS--SCCC-CHHHHHHHHHHHHHHHH
T ss_pred             EEccccCEEEEEEe--eCCCCccceEEEEEEEEEEECCCCceEEE--EEEEEEECC--CCcCCHHHHHHHHHHHHHHHHH
Confidence             3334444444222  23333111223344566777766678654  444555421  1122333445567788899999


Q ss_pred             HHHHHhhcCC
Q 009822          497 ARSYIKICTS  506 (524)
Q Consensus       497 ~~~~l~~~~~  506 (524)
                      ++.+|-.+..
T Consensus       147 ie~yll~np~  156 (159)
T 4a8u_A          147 VESYLLAHSD  156 (159)
T ss_dssp             HHHHHHHCTT
T ss_pred             HHHHHhhChh
Confidence            9999987754

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=82.61  E-value=23  Score=30.48  Aligned_cols=149  Identities=8%  Similarity=0.029  Sum_probs=83.0

Q ss_pred             eeeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEE
Q 009822          338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  417 (524)
Q Consensus       338 ~~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  417 (524)
                      ...+.+.++|++++|.++-.|-...+.+++......++..+.|.     .+..|.++|. +     |.....+  ++++.
T Consensus         5 ~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~-----~Gsir~~~~~-~-----G~~~~~~--kErl~   71 (157)
T 1tw0_A            5 FRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGG-----VGTIKKITAN-E-----GDKTSFV--LQKVD   71 (157)
T ss_dssp             EEEEEEESSCHHHHHHHHHHTGGGGGGGSCSSEEEEEEEESSSS-----TTCEEEEEEE-E-----TTEEEEE--EEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhcCcchhhhhHHhhccEEEEEeCCCC-----CCeEEEEEee-C-----CCccceE--EEEEE
Confidence            34567889999999999863322234444434444455566662     2567999886 2     3222223  33455


Q ss_pred             -ecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHH
Q 009822          418 -LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET  496 (524)
Q Consensus       418 -~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~  496 (524)
                       ...++..|..... . -|+.-...=+....|.+.+.++++|.+..  .++|.+..  -....-...+..++.+..+++.
T Consensus        72 ~~D~~~~~~~y~ii-e-Gd~~~~~~~~~~~~~~v~~~~~~gs~v~w--~~~y~~~~--~~~~~~~~~~~~~~~~~~~~k~  145 (157)
T 1tw0_A           72 AIDEANLGYDYSIV-G-GTGLPESLEKLSFETKVVAGSGGGSISKV--TLKFHTKG--DAPLSDAVRDDALAKGAGFFKA  145 (157)
T ss_dssp             EEETTTTEEEEEEE-E-CTTSCTTEEEEEEEEEEEECSSSSEEEEE--EEEEEEST--TCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCCEEEEEEE-e-cCCCccceEEEEEEEEEEecCCCCEEEEE--EEEEEECC--CCCCCHHHHHHHHHHHHHHHHH
Confidence             4444445444332 2 23321123344567777787666776554  44555421  0111222333457889999999


Q ss_pred             HHHHHhhcC
Q 009822          497 ARSYIKICT  505 (524)
Q Consensus       497 ~~~~l~~~~  505 (524)
                      ++++|..+.
T Consensus       146 ie~yll~~p  154 (157)
T 1tw0_A          146 IEGYVLANP  154 (157)
T ss_dssp             HHHHHHHCG
T ss_pred             HHHHHHhCc
Confidence            999998764

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=80.44  E-value=9  Score=35.85  Aligned_cols=149  Identities=8%  Similarity=0.107  Sum_probs=69.7

Q ss_pred             eeEEe-cCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEE-eeccCCCCCceeeEeEEEEEEe
Q 009822          341 NDVFP-CTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFR-SLCKSPIYPRDTAMTESQHAVL  418 (524)
Q Consensus       341 ~~~~~-~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~-~~~~~~~gpk~~~~~~~Q~~~~  418 (524)
                      ..+++ ++++++|++++.  .....++-.......+    -...++   .+ .+.|. ...-.|+.|+.--+... ....
T Consensus        78 ~~~~~~~~~~~v~~~l~d--~~~r~~Wd~~~~~~~v----le~i~~---~~-~i~y~~~~~p~p~s~RDfV~~r~-~~~~  146 (255)
T 2e3n_A           78 THAVKGVTGHEVCNYFWN--VDVRNDWETTIENFHV----VETLAD---NA-IIIYQTHKRVWPASQRDVLYLSV-IRKI  146 (255)
T ss_dssp             EEEEETCCHHHHHHHHHC--GGGHHHHCCSEEEEEE----EEEEET---TE-EEEEEEECCCTTSCCEEEEEEEE-EEEE
T ss_pred             EEEEcCCCHHHHHHHHhC--cchHhhhhhhcceeEE----EEEcCC---CC-EEEEEEeecCCCcCCceeEEEEE-EEec
Confidence            45565 999999999875  3333332212111111    111111   11 23333 33323555554222221 1112


Q ss_pred             ---cCC--CCeEEEEEEEeeCCCCCCCeE-EEE------EEEEEEee--------CCCCeEEEEEEEEEEeeeceeeeee
Q 009822          419 ---SPD--KKIFVFETVQQAHDVPFGSYF-EIH------GRWHLETI--------AENSSTIDIKVGAHFKKWCVIQFKI  478 (524)
Q Consensus       419 ---~~~--~~~~vv~~~~~~~dVPygd~F-~v~------~r~~i~~~--------~~~~c~l~v~~~V~f~K~t~~K~~I  478 (524)
                         .++  +.++++..+..-+++|-..-| +++      +.|.+.+.        ++++|+|.....+....+ +-+.++
T Consensus       147 ~~~~~~g~~~~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G~-iP~~lv  225 (255)
T 2e3n_A          147 PALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGW-APASVL  225 (255)
T ss_dssp             CCSSTTSCCEEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSSC-CCHHHH
T ss_pred             cccccCCCCEEEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCCc-cCHHHH
Confidence               122  356667666666778866554 222      12223222        235799888888887653 233344


Q ss_pred             eccHHHHHHHHHHHHHHHHHHHH
Q 009822          479 KTGAVNKYKKEVELMLETARSYI  501 (524)
Q Consensus       479 e~~~~~~~~~~~~~~~~~~~~~l  501 (524)
                      .+.+..++...++.+-+.+++..
T Consensus       226 n~~~~~~~~~~l~~L~k~v~~~~  248 (255)
T 2e3n_A          226 RAVAKREYPKFLKRFTSYVQEKT  248 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccccHHHHHHHHHHHHhc
Confidence            44444444444444444444433

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=80.16  E-value=13  Score=41.87  Aligned_cols=87  Identities=13%  Similarity=0.145  Sum_probs=57.5

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEE--CCe----EEeeeeecCCCCCccccEEEEEec--C--CCcEEEEEEEE
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSE----KRFSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYD   82 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~W~e~f~f~v~--~--~~~~L~v~v~d   82 (524)
                      ...+.|+|..+.++...   ...+-||.+.+  |+.    ...|..+.-..+|.|||.+.|++.  +  ....|.|+||+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            35689999999998653   35677877765  433    234555555678999999999863  3  35669999999


Q ss_pred             cCCC--C----------CCceeEEEEEEcccC
Q 009822           83 WDII--W----------KSTVLGSVIVTVESE  102 (524)
Q Consensus        83 ~d~~--~----------~d~~iG~~~i~l~~~  102 (524)
                      ....  +          .+..||.+.++|-+-
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCT
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECC
Confidence            6432  1          134788888887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	524
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-16
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	8e-16
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	6e-14
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	3e-12
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	4e-12
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-12
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-11
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	3e-11
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	9e-11
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-10
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	8e-10
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-09
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	2e-09
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	4e-09
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-09
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	5e-09
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-08

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 2e-16
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 7   ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 66

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI 126
            + VT++D D       LG V + + S        Y L +        G + L +  I
Sbjct: 67  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLI 124

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.1 bits (176), Expect = 8e-16
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPV 74
           +++ L++AK L  A+     DPY  +TC ++ + S++       P W E F F+V E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71

Query: 75  QIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTL---DSPSGQVCLHIK 124
           ++   I+D D+  +   +G   +    V  EG      Y +   +   G++ + + 
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.6 bits (162), Expect = 6e-14
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV 69
           ++ + +  AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F +
Sbjct: 16  VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 75

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              +   ++ V I+DWD+  ++  +GS+   +   +      W+ L S  
Sbjct: 76  KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQE 125

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 3e-12
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 12  SAYLIKLELLAAKNL---IGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEF 65
           S++   + +L A  +      ++  T DPY  +        ++ +        P+W E F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 66  NFSVDELPVQ-IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPSGQVCLH 122
            F +D      + +T+ D + +     LG+   TV S   G+   V +   +   ++ L 
Sbjct: 61  EFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIF-NQVTEMVLE 118

Query: 123 IK 124
           + 
Sbjct: 119 MS 120

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.7 bits (149), Expect = 4e-12
 Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMW 61
              TN+   + + +L A++L  ++++G SDPY  +          K+ + +   +   ++
Sbjct: 11  QSTTNT---LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 67

Query: 62  GEEFNFSVDELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSG 117
            E F F +    ++   +   + D +   ++ V+G +++   +EG  G  W    D P  
Sbjct: 68  NELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 127

Query: 118 QVC 120
           Q+ 
Sbjct: 128 QIA 130

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.3 bits (148), Expect = 5e-12
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 11/122 (9%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYA---IITCGSEKRFSSMVPGSR 57
                 D Q N    + + ++ A  L   ++ GTSDPY    ++    +K  + +   + 
Sbjct: 24  QYSLDYDFQNNQ---LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL 80

Query: 58  YPMWGEEFNFSVDELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTL 112
            P++ E+F F V    +    +++ +YD+D   K  ++G   V + +   G     W  L
Sbjct: 81  NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

Query: 113 DS 114
            S
Sbjct: 141 QS 142

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 2e-11
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT-----CGSEKRFSSMVPGSRYPMWGEEFNFSVD 70
           + + +L AK+L         +PY  I          KR +  V  +  P W + F +S  
Sbjct: 16  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 75

Query: 71  ELP----VQIIVTIYDWDIIWKS--TVLGSVIVTVES-EGQTGAVWYTL 112
                    + +T++D   + +     LG +++ +E+        WY L
Sbjct: 76  HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 124

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.6 bits (141), Expect = 3e-11
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 10/102 (9%)

Query: 31  LNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI 85
            +  S P+  +           +       + YP W   F+  + E  V I + +     
Sbjct: 20  EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV-IQIVLMRAAE 78

Query: 86  IWKSTV---LGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK 124
              S V   +  +    +        W  L  P  +V + ++
Sbjct: 79  DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-PQAKVLMCVQ 119

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 9e-11
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 16  IKLELLAAKNL--IGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNF 67
           +++ +++ + L  +  N N   DP  I+           ++ + +      P W  EF F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 68  SV-DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118
            V       +   + D+D   K+  +G   +      + G     L S +G 
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWN-SLKQGYRHVHLLSKNGD 116

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.8 bits (136), Expect = 2e-10
 Identities = 19/114 (16%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV- 69
           + + ++   +L   + NG SDP+  +          K  + +   +  P + EEF + + 
Sbjct: 17  LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL-DSPSGQVC 120
             D     + ++++D+DI   +  +G   + + ++G+    WY    +   ++ 
Sbjct: 77  HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE 130

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.9 bits (131), Expect = 8e-10
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 20/121 (16%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITC--------------GSEKRFSSMVPGSRYPMW 61
           + + +L A+NL+  + NG SDP+  +                   KR +  V  S  P W
Sbjct: 20  LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79

Query: 62  GEEFNFSV----DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSP 115
            +   +        +   + VT++D+D    +  LG V++ + S         WY L   
Sbjct: 80  NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139

Query: 116 S 116
           +
Sbjct: 140 T 140

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.0 bits (129), Expect = 1e-09
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           L+ + +  AK           + Y  +   + K  +  V GS  P W ++F F ++ L +
Sbjct: 3   LLCVGVKKAKFDGA---QEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDL 58

Query: 75  QIIVTIYDWDIIWK---STVLGSVIVTVESEGQTGAVWYTLDSPS----GQVC 120
            + V +++  +IW     TV   +    +S  +    W TLDS +     ++C
Sbjct: 59  GLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEIC 111

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 2e-09
 Identities = 13/103 (12%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           +++ +++AK            PY  +T   + + +     +  P W +     V     +
Sbjct: 8   LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSK 66

Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVES-----EGQTGAVWYTLD 113
           +   ++    +    +LG+  + +         +   V  TL 
Sbjct: 67  LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ 109

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.3 bits (127), Expect = 4e-09
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 12  SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFN 66
           +A L+ + ++ A NL   +L G SDPY   +  S     +KR +S+   +  P + E   
Sbjct: 18  TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77

Query: 67  FSV---DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTG-AVWYTL-DSPSGQVC 120
           F V       V + + + D+D I  + V+G   V  E+    G   W  +  +P   V 
Sbjct: 78  FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE 136

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.3 bits (127), Expect = 4e-09
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-----SSMVPGSRYPMWGEEFNFSVD 70
           + + +L AKNL   ++ G SDPY  I      +      +++   +  P + E F+F V 
Sbjct: 27  LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86

Query: 71  ELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT-LDSPSGQVC 120
              +Q   ++VT+ D+D I K+  +G V V   S G     W   L +P   + 
Sbjct: 87  FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 52.6 bits (125), Expect = 5e-09
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 26/140 (18%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANL-----------NGTSDPYAIITCGSEKRF 49
           MV F G        L+K+++  A +L                    DPY  +     +  
Sbjct: 1   MVVFNG--------LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG 52

Query: 50  SSMV-PGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVE----SEGQ 104
            +     +  P W +EF   V     +I + ++    I     + +  +  E    +  +
Sbjct: 53  QTATKQKTNSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSR 111

Query: 105 TGAVWYTLDSPSGQVCLHIK 124
               W  L+ P G+V + I 
Sbjct: 112 HFEDWIDLE-PEGKVYVIID 130

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 16  IKLELLAAKNLIGANLNG-TSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV-- 69
             + +  A+ L   +    TSDPY  +T       K  + ++  +  P + E F F    
Sbjct: 24  FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPSG 117
                 + +  TI  +D   +  ++G V++ +   E   G +    +  SG
Sbjct: 84  YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	524
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.84
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.8
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.75
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.74
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.73
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.69
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.69
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.68
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.67
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.66
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.64
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.61
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.59
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.58
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.57
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.55
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.54
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.48
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.46
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.24
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	96.03
d1t77a2	110	Lipopolysaccharide-responsive and beige-like ancho	95.87
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	94.17
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	93.4
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	92.09
d2hthb1	129	Vacuolar protein sorting protein 36, VPS36 {Human	92.01
d1fm4a_	159	Major tree pollen allergen {European white birch (	91.78
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	91.6
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	91.04
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	90.69
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	90.48
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	90.22
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	89.73
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	88.31
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	84.7

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-20  Score=161.91  Aligned_cols=117  Identities=23%  Similarity=0.424  Sum_probs=105.4

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~   90 (524)
                      ..-|.|.|+|++|++|+.++..|.+||||++++++..++|++++++.||.|+|+|.|.+..+...|.|+|||++..++|+
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            34589999999999999999999999999999999999999999999999999999999887888999999999999999


Q ss_pred             eeEEEEEEcccCCCcccEEEEecC------CCCeeEEEEEEEe
Q 009822           91 VLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTIK  127 (524)
Q Consensus        91 ~iG~~~i~l~~~~~~~~~w~~L~~------~~G~i~~~l~~~~  127 (524)
                      +||++.++|..+.....+|+.|..      ..|.|++++.+..
T Consensus        83 ~lG~~~i~l~~l~~~~~~~~~l~~~~~~~~~~G~i~l~~~~i~  125 (126)
T d2ep6a1          83 FLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLIY  125 (126)
T ss_dssp             ECCBCEEEGGGCCSSCCEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             eEEEEEEEHHHCCCCCceEEEccccCCCCceeEEEEEEEEEEE
Confidence            999999999999766778998864      2488888877653

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=1.9e-19  Score=156.18  Aligned_cols=120  Identities=22%  Similarity=0.383  Sum_probs=103.8

Q ss_pred             CCCCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeec-CCCCCccccEEEEEecCCCcEEEEEEEEcCCCC
Q 009822            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (524)
Q Consensus         9 ~~~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~   87 (524)
                      +....|+|.|+|++|++|+.++..|.+||||+++++...++|++++ +++||.|||+|.|.+.+....|.|+|||+|.++
T Consensus         5 ~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~   84 (136)
T d1wfja_           5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGT   84 (136)
T ss_dssp             CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCT
T ss_pred             CCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCC
Confidence            3456799999999999999999999999999999999999999987 589999999999999887788999999999999


Q ss_pred             CCceeEEEEEEcccC---CCcccEEEEecCC---CCeeEEEEEEEec
Q 009822           88 KSTVLGSVIVTVESE---GQTGAVWYTLDSP---SGQVCLHIKTIKL  128 (524)
Q Consensus        88 ~d~~iG~~~i~l~~~---~~~~~~w~~L~~~---~G~i~~~l~~~~~  128 (524)
                      +|++||++.|+|.++   ......|+.|...   .|+|++.+.+.+.
T Consensus        85 ~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_          85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeC
Confidence            999999999999986   3445789988532   3777777777643

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.75  E-value=7.5e-18  Score=145.95  Aligned_cols=113  Identities=18%  Similarity=0.258  Sum_probs=97.7

Q ss_pred             ceEEEEEEEEeecCcCCC-----------CCCCCCcEEEEEECCeE-EeeeeecCCCCCccccEEEEEecCCCcEEEEEE
Q 009822           13 AYLIKLELLAAKNLIGAN-----------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTI   80 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d-----------~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v   80 (524)
                      .|.|.|+|++|++|++++           ..+.+||||++++++.. .+|+++.++.+|.|||+|.|.+.+ ...|.|+|
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V   83 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELAV   83 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEEEE
Confidence            589999999999998754           35678999999999866 479999999999999999999865 56799999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC----CCcccEEEEecCCCCeeEEEEEEEe
Q 009822           81 YDWDIIWKSTVLGSVIVTVESE----GQTGAVWYTLDSPSGQVCLHIKTIK  127 (524)
Q Consensus        81 ~d~d~~~~d~~iG~~~i~l~~~----~~~~~~w~~L~~~~G~i~~~l~~~~  127 (524)
                      ||++.+++|++||.+.|+|.++    ....+.|++|++ .|++++.+.+..
T Consensus        84 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p-~G~v~l~v~~~~  133 (136)
T d1gmia_          84 FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-EGKVYVIIDLSG  133 (136)
T ss_dssp             EECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-SCEEEEEEEEEE
T ss_pred             EEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC-CcEEEEEEEEEe
Confidence            9999999999999999999987    233678999985 799988887664

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=6.4e-18  Score=145.67  Aligned_cols=102  Identities=27%  Similarity=0.487  Sum_probs=90.8

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEE-----CCeEEeeeeecCCCCCccccEEEEEecCC--CcEEEEEEEEcCC
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDI   85 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v~~~--~~~L~v~v~d~d~   85 (524)
                      .+.|.|+|++|+||+.++..|.+||||++++     +..+.+|++++++.||.|||+|.|.+...  ...|.|+|||+|.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            5789999999999999999999999999998     45567899999999999999999998643  4569999999999


Q ss_pred             CCCCceeEEEEEEcccC-CCcccEEEEecC
Q 009822           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (524)
Q Consensus        86 ~~~d~~iG~~~i~l~~~-~~~~~~w~~L~~  114 (524)
                      +++|++||.+.|+|.++ .....+||+|.+
T Consensus        94 ~~~d~~iG~~~i~l~~l~~~~~~~W~~L~~  123 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQKAGVDGWFKLLS  123 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTTCCEEEEEECBC
T ss_pred             CCCCcEeEEEEEeHHHcCCCCCCeEEECCC
Confidence            99999999999999987 445678999976

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=9.3e-18  Score=143.37  Aligned_cols=113  Identities=19%  Similarity=0.333  Sum_probs=93.7

Q ss_pred             ceEEEEEEEEeecCcCC---CCCCCCCcEEEEEECC---eEEeeeeecCCCCCccccEEEEEecCC-CcEEEEEEEEcCC
Q 009822           13 AYLIKLELLAAKNLIGA---NLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDI   85 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~---d~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d~   85 (524)
                      .+.|+|+|++|+||+..   |..|.+||||++.++.   .+.+|+++.++.||.|||+|.|.+... ...|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            47899999999999874   4468899999999964   567899999999999999999998764 4569999999986


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEecCC-CCeeEEEEEEE
Q 009822           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-SGQVCLHIKTI  126 (524)
Q Consensus        86 ~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~-~G~i~~~l~~~  126 (524)
                      . +|++||++.++|.++  +.....||+|.+. .|.+.+++.+.
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~  124 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVA  124 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECC
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEE
Confidence            5 688999999999988  5567789999763 46666665543

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-16  Score=137.91  Aligned_cols=89  Identities=11%  Similarity=0.231  Sum_probs=81.7

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~i   92 (524)
                      .+.|.|+|++|++|+..+..+.+||||.+.++++.++|++++++.||.|||.|.|.+.. ...|.|+|||++.+++|++|
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~i   83 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLL   83 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEE
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceE
Confidence            47899999999999998888999999999999999999999999999999999999875 56899999999999999999


Q ss_pred             EEEEEEcccC
Q 009822           93 GSVIVTVESE  102 (524)
Q Consensus        93 G~~~i~l~~~  102 (524)
                      |++.++|.++
T Consensus        84 G~~~i~L~~l   93 (133)
T d2nq3a1          84 GTAALDIYET   93 (133)
T ss_dssp             EEEEEEHHHH
T ss_pred             EEEEEEHHHh
Confidence            9999999876

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=7.9e-17  Score=140.69  Aligned_cols=103  Identities=23%  Similarity=0.427  Sum_probs=90.9

Q ss_pred             CceEEEEEEEEeecCcCCCCCCCCCcEEEEEE---CCeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEcCC
Q 009822           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDI   85 (524)
Q Consensus        12 ~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~d~   85 (524)
                      ..+.|.|+|++|+||+.++..|.+||||++++   +....+|++++++.||.|||+|.|.+..   ....|.|+|||++.
T Consensus        32 ~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~  111 (143)
T d1rsya_          32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC
Confidence            45689999999999999999999999999998   4556789999999999999999998743   35679999999999


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEecC
Q 009822           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (524)
Q Consensus        86 ~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~  114 (524)
                      ++++++||++.|+|.++  +....+||+|+.
T Consensus       112 ~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_         112 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            99999999999999998  556679999974

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.5e-16  Score=135.67  Aligned_cols=97  Identities=23%  Similarity=0.405  Sum_probs=85.4

Q ss_pred             eEEEEEEEEeecCcCCCCCCCCCcEEEEEECCeEEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009822           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d~~iG   93 (524)
                      +.|+|+|.+|++|.+++   ..||||.+++++.+.+|.++++ .||.|||+|.|.+.++...|.|+|||++.. +|++||
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k~-~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG   76 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVG   76 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEES-SSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEecC-CCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceE
Confidence            68999999999999976   6899999999999999988864 599999999999988888899999999876 689999


Q ss_pred             EEEEEcccC----CCcccEEEEecCC
Q 009822           94 SVIVTVESE----GQTGAVWYTLDSP  115 (524)
Q Consensus        94 ~~~i~l~~~----~~~~~~w~~L~~~  115 (524)
                      ++.|+|.++    ......||+|..+
T Consensus        77 ~~~I~L~~l~~~~~~~~~~W~~L~~~  102 (128)
T d2cjta1          77 TVWIPLRTIRQSNEEGPGEWLTLDSQ  102 (128)
T ss_dssp             EEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred             EEEEEehhhccCCCCCCCeeEECCcc
Confidence            999999987    2345689999764

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2e-17  Score=144.24  Aligned_cols=104  Identities=25%  Similarity=0.421  Sum_probs=88.9

Q ss_pred             ceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC--------------eEEeeeeecCCCCCccccEEEEEecC----CCc
Q 009822           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS--------------EKRFSSMVPGSRYPMWGEEFNFSVDE----LPV   74 (524)
Q Consensus        13 ~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--------------~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~   74 (524)
                      .+.|.|+|++|+||+.++..|.+||||++++..              .+++|++++++.||.|||+|.|....    ...
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            468999999999999999999999999999832              12468888999999999999997422    356


Q ss_pred             EEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEecCCC
Q 009822           75 QIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (524)
Q Consensus        75 ~L~v~v~d~d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~~  116 (524)
                      .|.|+|||++.++++++||++.|+|.++  .....+||+|.++.
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            7999999999999999999999999988  55567999998754

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=1.6e-16  Score=136.42  Aligned_cols=104  Identities=23%  Similarity=0.365  Sum_probs=88.6

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC---CeEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEEcC
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d~d   84 (524)
                      +..+.|.|+|++|+||+.++..|.+||||++++.   ...++|++++++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        15 ~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~   94 (130)
T d1dqva1          15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   94 (130)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence            5568999999999999999999999999999983   4567899999999999999999997542   456999999999


Q ss_pred             CCCCCceeEEEEEEcccC----CCcccEEEEecC
Q 009822           85 IIWKSTVLGSVIVTVESE----GQTGAVWYTLDS  114 (524)
Q Consensus        85 ~~~~d~~iG~~~i~l~~~----~~~~~~w~~L~~  114 (524)
                      .++++++||++.|++...    ......|++|..
T Consensus        95 ~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          95 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             CCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            999999999999986432    334567999975

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=2.1e-15  Score=129.43  Aligned_cols=104  Identities=21%  Similarity=0.309  Sum_probs=83.9

Q ss_pred             eEEEEEEEEeecCcC--CCCCCCCCcEEEEEE-----CCeEEeeeeecC-CCCCccccEEEEEecCC-CcEEEEEEEEcC
Q 009822           14 YLIKLELLAAKNLIG--ANLNGTSDPYAIITC-----GSEKRFSSMVPG-SRYPMWGEEFNFSVDEL-PVQIIVTIYDWD   84 (524)
Q Consensus        14 ~~L~V~vi~A~~L~~--~d~~g~~dpyv~v~~-----~~~~~~T~~~~~-t~nP~W~e~f~f~v~~~-~~~L~v~v~d~d   84 (524)
                      ..|.|+|++|++|+.  .+..|.+||||++++     +..+.+|+++++ ++||.|||+|.|.+... ...|.|+|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            479999999999965  456778999999998     356778988865 47999999999987543 456999999999


Q ss_pred             CCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822           85 IIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        85 ~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~  118 (524)
                      ..++|++||++.++|..+..+ .+|++|..+.|+
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g-~~~~~L~~~~g~  116 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG-YRHVHLLSKNGD  116 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE-EEEEEEECTTSC
T ss_pred             CCCCCcEEEEEEEEEeccCCC-CEEEECCCCCcC
Confidence            999999999999999998654 579999876665

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.1e-15  Score=130.10  Aligned_cols=103  Identities=23%  Similarity=0.422  Sum_probs=82.8

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEE-----CCeEEeeeeecCCCCCccccEEEEE-ecC---CCcEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIY   81 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~v~   81 (524)
                      +..+.|.|+|++|+||++.+..+.+||||++.+     ....++|++++++.+|.|||+|.|. +..   ....|.|+||
T Consensus        11 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~   90 (125)
T d2bwqa1          11 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   90 (125)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence            345789999999999999999999999999998     2345789999999999999999997 432   2346999999


Q ss_pred             EcCCCC--CCceeEEEEEEcccC-CCcccEEEEec
Q 009822           82 DWDIIW--KSTVLGSVIVTVESE-GQTGAVWYTLD  113 (524)
Q Consensus        82 d~d~~~--~d~~iG~~~i~l~~~-~~~~~~w~~L~  113 (524)
                      |++..+  ++++||++.++|+++ .....+||+|+
T Consensus        91 d~~~~~~~~~~~iG~~~i~l~~~~~~~~~~Wy~L~  125 (125)
T d2bwqa1          91 DQARVREEESEFLGEILIELETALLDDEPHWYKLQ  125 (125)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             ECCCCCCCCCeeEEEEEEEchhcCCCCCCEEEeCc
Confidence            999764  456999999999988 34557899985

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.2e-15  Score=128.64  Aligned_cols=103  Identities=16%  Similarity=0.194  Sum_probs=87.0

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC----CeEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEEc
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW   83 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~----~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d~   83 (524)
                      ...+.|.|+|++|++|..   .|.+||||++.+.    ....+|++++++.+|.|||.|.|.+..   ....|.|+|||+
T Consensus        23 ~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T d1wfma_          23 CQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeee
Confidence            345789999999999953   5789999999983    234679999999999999999999854   245699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEecCCC
Q 009822           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~--~~~~~~w~~L~~~~  116 (524)
                      +.++++++||++.|+|.++  ......|++|.++.
T Consensus       100 ~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~  134 (138)
T d1wfma_         100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             cccccceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence            9999999999999999988  45678999998743

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=8.5e-16  Score=132.89  Aligned_cols=107  Identities=17%  Similarity=0.321  Sum_probs=89.7

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEE-----CCeEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d   82 (524)
                      +..+.|.|+|++|+||+.++..+.+||||++.+     ...+++|++++++.+|.|||+|.|.+...   ...|.|.|||
T Consensus        12 ~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~   91 (137)
T d2cm5a1          12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD   91 (137)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeee
Confidence            456899999999999999998999999999997     23456899999999999999999998532   4569999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEecCCCC
Q 009822           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G  117 (524)
                      ++.++++++||++.+++........+|++|....+
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~  126 (137)
T d2cm5a1          92 YDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKD  126 (137)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTT
T ss_pred             CCCCCCCCEEEEEEeCccccCcchhhhhhHhhCCC
Confidence            99999999999999999877555567777654333

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=9.8e-16  Score=132.76  Aligned_cols=102  Identities=19%  Similarity=0.382  Sum_probs=79.3

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEE--CC---eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC--GS---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~--~~---~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d   82 (524)
                      +..+.|.|+|++|+||++++..+.+||||++.+  +.   .+++|++++++.||.|||+|.|.+...   ...|.|+|||
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d   91 (138)
T d1w15a_          12 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLD   91 (138)
T ss_dssp             TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEe
Confidence            456789999999999999999999999999997  22   345799999999999999999997532   3459999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEe
Q 009822           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTL  112 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~~~~~~~w~~L  112 (524)
                      ++.++++++||++.|++........+|+.|
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~~~~~hW~~l  121 (138)
T d1w15a_          92 SERGSRNEVIGRLVLGATAEGSGGGHWKEI  121 (138)
T ss_dssp             CCTTSCCEEEEEEEESTTCCSHHHHHHHHH
T ss_pred             CCCCCCCCEEEEEEEcchhCCchHHHHHHH
Confidence            999999999999999998764444455554

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.8e-14  Score=127.47  Aligned_cols=104  Identities=33%  Similarity=0.472  Sum_probs=87.0

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEEC--C---eEEeeeeecCCCCCccccEEEEEecCC---CcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~v~d   82 (524)
                      +..+.|.|+|++|+||+..+..+.+||||++++.  .   ..++|++.+++.||.|||+|.|.+...   ...|.|+|||
T Consensus        22 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d  101 (157)
T d1uowa_          22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (157)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcc
Confidence            4567999999999999999999999999999973  2   234799999999999999999998542   3569999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--------------CCcccEEEEecC
Q 009822           83 WDIIWKSTVLGSVIVTVESE--------------GQTGAVWYTLDS  114 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~--------------~~~~~~w~~L~~  114 (524)
                      ++.++++++||++.|++...              .....+|++|.+
T Consensus       102 ~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_         102 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             CCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             cCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            99999999999999999764              223457887764

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.9e-14  Score=123.31  Aligned_cols=91  Identities=19%  Similarity=0.322  Sum_probs=78.8

Q ss_pred             CceEEEEEEEEeecCcCCCCCCC-CCcEEEEEE---CCeEEeeeeecCCCCCccccEEEEE-ecC---CCcEEEEEEEEc
Q 009822           12 SAYLIKLELLAAKNLIGANLNGT-SDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYDW   83 (524)
Q Consensus        12 ~~~~L~V~vi~A~~L~~~d~~g~-~dpyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~v~d~   83 (524)
                      ....|.|+|++|+||+.++..+. +||||++.+   ....++|++++++.||.|||+|.|. +..   ....|.|+|||+
T Consensus        20 ~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~   99 (138)
T d1ugka_          20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEEC
Confidence            45679999999999999887654 799999998   4567789999999999999999997 432   134699999999


Q ss_pred             CCCCCCceeEEEEEEcccC
Q 009822           84 DIIWKSTVLGSVIVTVESE  102 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~  102 (524)
                      +.++++++||++.|+|.++
T Consensus       100 d~~~~~~~iG~~~i~L~~~  118 (138)
T d1ugka_         100 DRFSRDDIIGEVLIPLSGI  118 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTC
T ss_pred             CCCCCCcEEEEEEEEcccc
Confidence            9999999999999999987

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.7e-13  Score=115.78  Aligned_cols=107  Identities=14%  Similarity=0.251  Sum_probs=83.1

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEECCe-----EEeeeeecCCCCCccccEEEEEecCCCcEEEEEEEEcCCCCCC
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKS   89 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-----~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~v~v~d~d~~~~d   89 (524)
                      .|.|.+....--+.....+.+||||.+++...     ..+|++.++|+||.|||+|.|.+.+ ...|.|.|||+|    +
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d----d   78 (123)
T d1bdya_           4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA----E   78 (123)
T ss_dssp             EEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET----T
T ss_pred             eEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc----c
Confidence            34555544322223445789999999998532     3468888999999999999999976 578999999986    6


Q ss_pred             ceeEEEEEEcccC-------CCcccEEEEecCCCCeeEEEEEEEe
Q 009822           90 TVLGSVIVTVESE-------GQTGAVWYTLDSPSGQVCLHIKTIK  127 (524)
Q Consensus        90 ~~iG~~~i~l~~~-------~~~~~~w~~L~~~~G~i~~~l~~~~  127 (524)
                      +++|.+.+.+..+       +...+.|++|+ +.|++++.+++..
T Consensus        79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~-~~Gkl~l~v~~f~  122 (123)
T d1bdya_          79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB-SSCEEEEEEEEEE
T ss_pred             cccCccEEehhheeeccccCCCcccEEEeCC-CCEEEEEEEEEec
Confidence            8999999999876       34567999998 5899999998763

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=3e-15  Score=130.81  Aligned_cols=104  Identities=27%  Similarity=0.401  Sum_probs=86.5

Q ss_pred             CCceEEEEEEEEeecCcCCCCCCCCCcEEEEEECC-----eEEeeeeecCCCCCccccEEEEEecC---CCcEEEEEEEE
Q 009822           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (524)
Q Consensus        11 ~~~~~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~v~d   82 (524)
                      +..|.|.|+|++|+||+..+..+.+||||++.+..     .+++|++++++.||.|||+|.|.+..   ....|.|.|||
T Consensus        17 ~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d   96 (145)
T d1dqva2          17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD   96 (145)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred             CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEe
Confidence            55689999999999999999899999999999843     24679999999999999999998753   23459999999


Q ss_pred             cCCCCCCceeEEEEEEcccCC-CcccEEEEecC
Q 009822           83 WDIIWKSTVLGSVIVTVESEG-QTGAVWYTLDS  114 (524)
Q Consensus        83 ~d~~~~d~~iG~~~i~l~~~~-~~~~~w~~L~~  114 (524)
                      ++.++++++||++.|+++.+. ....+|++|..
T Consensus        97 ~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~  129 (145)
T d1dqva2          97 YDCIGHNEVIGVCRVGPEAADPHGREHWAEMLA  129 (145)
T ss_dssp             CCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSS
T ss_pred             cCCCCCCcEEEEEEECchHcCchhhHHHHHHHh
Confidence            999999999999999998762 23456766543

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.1e-11  Score=101.30  Aligned_cols=95  Identities=17%  Similarity=0.257  Sum_probs=72.9

Q ss_pred             EEEEEEEEeecCcCCCCCCCCCcEEEEEEC------CeEEeeeee--cCCCCCccccE-EEEE-ecCC-CcEEEEEEEEc
Q 009822           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMV--PGSRYPMWGEE-FNFS-VDEL-PVQIIVTIYDW   83 (524)
Q Consensus        15 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~------~~~~~T~~~--~~t~nP~W~e~-f~f~-v~~~-~~~L~v~v~d~   83 (524)
                      +|.|+|++|++|+..    ..||||.+.+-      ..+.+|++.  .+++||.|||+ |.+. +..+ ...|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999764    47999999972      233445443  67899999976 4443 4432 34699999997


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEecCCCCe
Q 009822           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (524)
Q Consensus        84 d~~~~d~~iG~~~i~l~~~~~~~~~w~~L~~~~G~  118 (524)
                      +    +++||++.++|+.+..+ .++++|.++.|+
T Consensus        78 d----~~~lG~~~ipl~~l~~G-yR~vpL~~~~g~  107 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSG-YHHLCLHSESNM  107 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCE-EEEEEEECTTCC
T ss_pred             C----CCEEEEEEEEcccCcCC-ceEEEccCCCcC
Confidence            5    78999999999999665 578999887777

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.015  Score=47.05  Aligned_cols=71  Identities=18%  Similarity=0.287  Sum_probs=50.4

Q ss_pred             cCcccceEEe-----eeeeeeeccceeeEEEeecceEEEEeccCcceeEEEEecccccccccccccee----cCcEEEEE
Q 009822          171 LLPDEFVELS-----YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI----NPAITIIL  241 (524)
Q Consensus       171 lp~~e~l~~~-----~~c~l~~~~~~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~----~~~i~i~~  241 (524)
                      |-++|.++..     +-|.+.  -++.|.||+|+-++.|.+..-.....+.||+.-|..|+|......    ..+|+|.+
T Consensus         5 llpGE~i~~~~~~V~~~~p~~--~~~~G~L~lTnyrliF~~~~~~~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L~I~C   82 (125)
T d1zsqa1           5 LLPGENIKDMAKDVTYICPFT--GAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVC   82 (125)
T ss_dssp             CCTTCCEEEEEEEEEEEETTT--EEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEE
T ss_pred             cCCCcEEEEeeccEEEEccCC--CccceEEEEEeeEEEEEcCCCCccEEEEeccceeeeeeecccccccCCccccEEEEe
Confidence            3356655443     334333  357899999999999998765656677899999999998654422    12799999


Q ss_pred             ec
Q 009822          242 RM  243 (524)
Q Consensus       242 ~~  243 (524)
                      ++
T Consensus        83 KD   84 (125)
T d1zsqa1          83 KD   84 (125)
T ss_dssp             TT
T ss_pred             cc
Confidence            74

>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0099  Score=47.06  Aligned_cols=88  Identities=16%  Similarity=0.159  Sum_probs=60.8

Q ss_pred             ceEEeeeeeeee-ccceeeEEEeecceEEEEeccC--------------cceeEEEEeccccccccccccceecCcEEEE
Q 009822          176 FVELSYSCVIER-SFLYHGRMYVSAWHICFHSNAF--------------SRQMKVIIPIGDIDEIQRSQHAFINPAITII  240 (524)
Q Consensus       176 ~l~~~~~c~l~~-~~~~~Gr~yit~~~~cF~s~~~--------------g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~  240 (524)
                      +++-+..|.+.. ..-..|++.||++++||.....              .......+|+++|..|-+..-.+-..||+|.
T Consensus         2 pv~~s~~c~lItp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~ll~~~alEif   81 (110)
T d1t77a2           2 PVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIF   81 (110)
T ss_dssp             CCSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred             CEEEEeeEEEEEecceEEEEEEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHhhhhcCCceEEEEE
Confidence            356678898866 6668999999999999987421              0123346999999999875554434599999


Q ss_pred             EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHH
Q 009822          241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR  279 (524)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~  279 (524)
                      +..              | ..| |..|.+.+.+-+++..
T Consensus        82 ~~~--------------~-~s~-~~~F~~~~~~~~v~~~  104 (110)
T d1t77a2          82 MAN--------------R-VAV-MFNFPDPATVKKVVNF  104 (110)
T ss_dssp             ETT--------------S-CEE-EEECSSHHHHHHHHHH
T ss_pred             EcC--------------C-cEE-EEEeCCHHHHHHHHHh
Confidence            964              3 244 4468776655555543

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.17  E-value=0.036  Score=44.97  Aligned_cols=81  Identities=16%  Similarity=0.267  Sum_probs=53.7

Q ss_pred             eeeEEEeecceEEEEeccCcceeEEEEeccccccccccccceecCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeech
Q 009822          191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNR  270 (524)
Q Consensus       191 ~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r  270 (524)
                      -.|++|+|.++|+|-.+.--....+.+||..|..++-.++. +..+-+|+++..+          +.....++-.||..-
T Consensus        43 ~~G~l~LTshRiI~v~~~~~~~~S~slpL~~i~~~e~~~~~-~~ss~KI~l~l~~----------~~~~~~~vklsFr~g  111 (130)
T d2caya1          43 QRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGF-LTRSPRLILFFKD----------PSSSTEFVQLSFRKS  111 (130)
T ss_dssp             SSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSS-SSSSCEEEEEESS----------CSSTTCCEEEEESSS
T ss_pred             cCceEEEEeeEEEEecCCCCceeEEEeEhhheeEeEEEccc-cCCCCeEEEEeCC----------CCCCCCEEEEEEcCC
Confidence            46999999999999875433345799999999999977664 3445566665432          122345666777665


Q ss_pred             HH--HHHHHHHHHH
Q 009822          271 NH--ALRQLQRTAK  282 (524)
Q Consensus       271 d~--~~~~l~~~~~  282 (524)
                      ++  -++.+++.++
T Consensus       112 g~~~F~~~~~~~~~  125 (130)
T d2caya1         112 DGVLFSQATERALE  125 (130)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHH
Confidence            42  2455655553

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=93.40  E-value=0.7  Score=38.40  Aligned_cols=148  Identities=14%  Similarity=0.119  Sum_probs=85.1

Q ss_pred             eeEEecCHHHHHHHHcCCCCchHHHHH-HHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEec
Q 009822          341 NDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS  419 (524)
Q Consensus       341 ~~~~~~s~~~lf~~lf~d~s~f~~~~~-~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~  419 (524)
                      +.+.++|+++||++|+.|...++.+.+ ...+.-++.-++|.+     +..|.++|...     || ..  ..+|++...
T Consensus         8 E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~-----GsIr~~~~~~~-----~~-~~--~~KErie~i   74 (159)
T d1e09a_           8 EFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGP-----GTIKKITFGEG-----SQ-YG--YVKHKIDSI   74 (159)
T ss_dssp             EEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSST-----TCEEEEEECCS-----SS-CE--EEEEEEEEE
T ss_pred             EEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCCCc-----CcEEEEEEcCC-----CC-cE--EEEEEEEEE
Confidence            456688999999999885434444443 345555666677742     46788888522     33 22  334667643


Q ss_pred             -CCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHHH
Q 009822          420 -PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETAR  498 (524)
Q Consensus       420 -~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~  498 (524)
                       .++..+.  -+.---|+....+=++.....+...++++|.+...  ++|.+-.  -..+.-.-....++.+..+++.++
T Consensus        75 D~~~~~~~--y~viEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt--~eYe~~~--~~~~~~e~~~~~~e~~~~~~K~iE  148 (159)
T d1e09a_          75 DKENYSYS--YTLIEGDALGDTLEKISYETKLVASPSGGSIIKST--SHYHTKG--NVEIKEEHVKAGKEKASNLFKLIE  148 (159)
T ss_dssp             ETTTTEEE--EEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEE--EEEEECS--SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccEEE--EEEEecccccccEEEEEEEEEEccCCCCCcEEEEE--EEEEECC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence             3333333  33333455533333444445555666678876554  4455411  111222233456778888999999


Q ss_pred             HHHhhcCCC
Q 009822          499 SYIKICTSG  507 (524)
Q Consensus       499 ~~l~~~~~~  507 (524)
                      .+|-.+...
T Consensus       149 ayLlanp~~  157 (159)
T d1e09a_         149 TYLKGHPDA  157 (159)
T ss_dssp             HHHHHCTTS
T ss_pred             HHHhhChhh
Confidence            999988654

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=92.09  E-value=1.2  Score=36.85  Aligned_cols=148  Identities=8%  Similarity=-0.008  Sum_probs=86.9

Q ss_pred             eeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEec
Q 009822          340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS  419 (524)
Q Consensus       340 ~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~  419 (524)
                      .+.+.++|+++||++++.|...++.......+..++..++     ...+..|.++|..-     +|   .-..+|++...
T Consensus         7 ~E~~~~v~a~k~fka~~~d~~~l~pk~p~~i~s~e~~eGd-----G~~GsIr~~~~~~g-----~~---~~~~Kerie~v   73 (157)
T d1xdfa1           7 DESTSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEGN-----GGPGTIKKLTLIEG-----GE---TKYVLHKIEAV   73 (157)
T ss_dssp             EEEEESSCHHHHHHHHHHSHHHHHHHHCTTEEEEEEEESS-----SSTTCEEEEEEEET-----TE---EEEEEEEEEEE
T ss_pred             EEEeccCCHHHHHHHHhhchhhccccchhheecceeecCC-----CCCCcEEEEEEcCC-----Cc---cEEEEEEEEEE
Confidence            3566788999999999876555556554434444444442     22467799988643     22   12356777743


Q ss_pred             CCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHHHH
Q 009822          420 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARS  499 (524)
Q Consensus       420 ~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~  499 (524)
                      ++ ....+..+.---|+-...+-++.....|.+.++++|.++..  ++|.+-.  ...+.-.-.+..++.+..+++.++.
T Consensus        74 D~-e~~~~~y~viEGd~l~~~~~s~~~~~k~~~~~~ggsv~k~t--~eYe~~~--~~~~~~e~ik~~~e~~~~~~K~iEa  148 (157)
T d1xdfa1          74 DE-ANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVT--IKIETKG--DAQPNEEEGKAAKARGDAFFKAIEN  148 (157)
T ss_dssp             EG-GGTEEEEEEESSTTSCTTEEEEEEEEEEEECTTSSEEEEEE--EEEEESS--SSCCCHHHHHHHHHHHHTTTHHHHH
T ss_pred             ec-hhcEEEEEEEecccccccEEEEEEEEEEEcCCCCceEEEEE--EEEEECC--CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            22 22333333333334334455667788888888888876655  4465422  1112222234456677788899999


Q ss_pred             HHhhcC
Q 009822          500 YIKICT  505 (524)
Q Consensus       500 ~l~~~~  505 (524)
                      +|-.+.
T Consensus       149 YLlanp  154 (157)
T d1xdfa1         149 YLSAHP  154 (157)
T ss_dssp             HHHTSG
T ss_pred             HHhhCC
Confidence            988764

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.59  Score=37.42  Aligned_cols=90  Identities=13%  Similarity=0.158  Sum_probs=52.3

Q ss_pred             eeeEEEeecceEEEEeccCcceeEEEEeccccccccccccceecCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeech
Q 009822          191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNR  270 (524)
Q Consensus       191 ~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r  270 (524)
                      -.|++|+|+++|+|-..... ...+.+||..|..++.....+..+ -.|.+..-+-..+..+-..+.....++-.+|...
T Consensus        34 ~~G~l~LTthRli~~~~~~~-~~s~~lpl~~i~~~e~~~~~fg~s-~ki~l~l~~~~~~~~~gp~~~s~~~~~KLsFk~G  111 (129)
T d2hthb1          34 DAGTLLLSTHRLIWRDQKNH-ECCMAILLSQIVFIEEQAAGIGKS-AKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEH  111 (129)
T ss_dssp             CCEEEEEESSEEEEEETTCC-SCCEEEEGGGEEEEEEECCTTSSC-CEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTS
T ss_pred             cceEEEEEeceEEEecCCCC-ceEEEEEhHHceeeeEEcccccCC-ceEEEEEccCCcCCcCCCcCcCCceEEEEEECCC
Confidence            45999999999999865544 467899999999999887765433 2333321111111111111122345566777665


Q ss_pred             H--HHHHHHHHHHH
Q 009822          271 N--HALRQLQRTAK  282 (524)
Q Consensus       271 d--~~~~~l~~~~~  282 (524)
                      .  +-+..|.+.++
T Consensus       112 G~~eF~~~l~~al~  125 (129)
T d2hthb1         112 GQIEFYRRLSEEMT  125 (129)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            3  33455555543

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=91.78  E-value=1.8  Score=35.76  Aligned_cols=148  Identities=12%  Similarity=0.158  Sum_probs=85.5

Q ss_pred             eeEEecCHHHHHHHHcCCCCchHHHHH-HHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEec
Q 009822          341 NDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS  419 (524)
Q Consensus       341 ~~~~~~s~~~lf~~lf~d~s~f~~~~~-~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~  419 (524)
                      +...++|+++||+++..|...++.+.+ ...+.-++.-++|.     .+..|.++|..     -+| ...  .++++...
T Consensus         8 E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~-----~GsIr~~~~~~-----~~~-~~~--~Kerve~i   74 (159)
T d1fm4a_           8 EATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGG-----PGTIKKINFPE-----GFP-FKY--VKDRVDEV   74 (159)
T ss_dssp             EEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSS-----TTCEEEEECCT-----TSS-SSE--EEEEEEEE
T ss_pred             EeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCCC-----CCCEEEEEecC-----CCC-ceE--EEEEEEEE
Confidence            455688999999999875444445443 34444455556553     25668787632     233 222  35566643


Q ss_pred             -CCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHHH
Q 009822          420 -PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETAR  498 (524)
Q Consensus       420 -~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~  498 (524)
                       .++..+....  ---|+.-...=+......+.+.++++|.+...  ++|.+-.  -..+........++.+..+++.++
T Consensus        75 D~~~~~~~y~v--iEGd~l~~~~~s~~~~~k~~~~~~gg~v~kwt--~eYe~~~--~~~~~~e~~k~~ke~~~~~~K~iE  148 (159)
T d1fm4a_          75 DHTNFKYNYSV--IEGGPVGDTLEKISNEIKIVATPDGGCVLKIS--NKYHTKG--NHEVKAEQVKASKEMGETLLRAVE  148 (159)
T ss_dssp             ETTTTEEEEEE--EEBTTBTTTEEEEEEEEEEEECTTSCEEEEEE--EEEEEST--TCCCCTTTTHHHHHHHHHHHHHHH
T ss_pred             cccccEEEEEE--EeccccccceEEEEEEEEEecCCCCceEEEEE--EEEEECC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence             3343444332  22444333333455566667777778866654  4454311  112223344567788899999999


Q ss_pred             HHHhhcCCC
Q 009822          499 SYIKICTSG  507 (524)
Q Consensus       499 ~~l~~~~~~  507 (524)
                      .+|-.+...
T Consensus       149 ~YLlanp~~  157 (159)
T d1fm4a_         149 SYLLAHSDA  157 (159)
T ss_dssp             HHHHHCTTT
T ss_pred             HHHhhChhh
Confidence            999988654

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.33  Score=37.55  Aligned_cols=52  Identities=15%  Similarity=0.231  Sum_probs=39.2

Q ss_pred             eeeEEEeecceEEEEeccCcceeEEEEeccccccccccccceecCcEEEEEec
Q 009822          191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRM  243 (524)
Q Consensus       191 ~~Gr~yit~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~  243 (524)
                      ..|.||+++.+|-|-.+- +-...+.+++.+|...+-++..-=-..++|..+.
T Consensus        20 ~~GtL~l~~d~l~W~p~~-~~~~~v~~~~~~I~~~q~Spe~s~Kv~Lkiv~~~   71 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEG-KDRFTISHMYADIKCQKISPEGKAKIQLQLVLHA   71 (108)
T ss_dssp             CEEEEEECSSEEEEEESS-CSSCSEEEETTTEEEEEECCTTCSSEEEEEEETT
T ss_pred             CCcEEEEEcCeEEEEcCC-CCCceEEEEhhhhhceecCCCCcccceeEEEEeC
Confidence            569999999999999875 4455689999999888776654211267887764

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=1  Score=38.83  Aligned_cols=150  Identities=12%  Similarity=0.052  Sum_probs=77.3

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccC--CCCCceeeEeEEEEE
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKS--PIYPRDTAMTESQHA  416 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~--~~gpk~~~~~~~Q~~  416 (524)
                      -++.++++|++++|..++.| .       +.+..+|-.+..+...+..+..+..+-|......  ++.|+.  +...+..
T Consensus        55 k~~~~i~~~~~~v~~~~~~d-~-------e~~~~Wd~~~~~~~ile~~~~~~~i~~~~~~~~~~~~vs~RD--~v~~~~~  124 (214)
T d1em2a_          55 ILKTFLPCPAELVYQEVILQ-P-------ERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRD--FVNVRRI  124 (214)
T ss_dssp             EEEEEESSCHHHHHHHTTTC-H-------HHHTTTCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCEE--EEEEEEE
T ss_pred             EEEEEEeCCHHHHHHHHHhC-h-------HHHHHHHHHHhheEEEEEcCCCceEEEEEecccCCCCCCCcE--EEEEEEE
Confidence            45778999999999877753 2       2233333333333332211122232222222221  233332  2223334


Q ss_pred             EecCCCCeEEEEEEEeeCCCCCCCe-EEE---EEEEEEEeeCC--CCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHH
Q 009822          417 VLSPDKKIFVFETVQQAHDVPFGSY-FEI---HGRWHLETIAE--NSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEV  490 (524)
Q Consensus       417 ~~~~~~~~~vv~~~~~~~dVPygd~-F~v---~~r~~i~~~~~--~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~  490 (524)
                      ... ++.++++......++.|-... =++   ...|+|++.+.  ++|++...+.+...++ +-+.++.......+.   
T Consensus       125 ~~~-~~~~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~---  199 (214)
T d1em2a_         125 ERR-RDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LPRYLIHQSLAATMF---  199 (214)
T ss_dssp             EEC-SSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SCHHHHHHHHHHHHH---
T ss_pred             EEc-CCcEEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEEEEeCCCCC-CCHHHHHHHHHHhHH---
Confidence            443 334555555555556654444 333   37899998654  5899999999887665 334444444444444   


Q ss_pred             HHHHHHHHHHHhhc
Q 009822          491 ELMLETARSYIKIC  504 (524)
Q Consensus       491 ~~~~~~~~~~l~~~  504 (524)
                       .+++.+++.+++.
T Consensus       200 -~~~~~Lrk~~~k~  212 (214)
T d1em2a_         200 -EFAFHLRQRISEL  212 (214)
T ss_dssp             -HHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHh
Confidence             4555555555544

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=90.69  E-value=3.1  Score=32.79  Aligned_cols=137  Identities=9%  Similarity=0.008  Sum_probs=74.8

Q ss_pred             eeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEecccccc----CCCCCcEEEEEEEeeccCCCCCceeeEeEEEEE
Q 009822          341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAA----DEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA  416 (524)
Q Consensus       341 ~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~----~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~  416 (524)
                      +-++++|++++|+++-+  -.-+.+|.           ||...    ++ +      +|..-+...+||-.....-.-.+
T Consensus         6 ~~~i~~~~e~v~~~l~D--~~~~~~~~-----------Pg~~~~~~~~~-~------~~~~~~~~~~g~~~~~~~~~~~~   65 (147)
T d2pcsa1           6 SIELKGTVEEVWSKLMD--PSILSKCI-----------MGCKSLELIGE-D------KYKADLQIGIAAVKGKYDAIIEV   65 (147)
T ss_dssp             EEEEESCHHHHHHHHTC--HHHHHHHS-----------TTEEEEEEEET-T------EEEEEEEECCGGGCEEEEEEEEE
T ss_pred             eEEeCCCHHHHHHHHcC--HHHHHhhC-----------cchhhceecCC-C------EEEEEEEEeecceeeeeEEEEEE
Confidence            45789999999999943  22233332           33321    11 1      23333333455544333332233


Q ss_pred             EecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHH
Q 009822          417 VLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET  496 (524)
Q Consensus       417 ~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~  496 (524)
                      ........+.+......    .+..+.....|.+...++++|+|.+++.+++..  ++..+..+-...-..+..+++++.
T Consensus        66 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~g--~l~~l~~~li~~~~~~~~~~f~~~  139 (147)
T d2pcsa1          66 TDIKPPYHYKLLVNGEG----GPGFVNAEGVIDLTPINDECTQLTYTYSAEVGG--KVAAIGQRMLGGVAKLLISDFFKK  139 (147)
T ss_dssp             EEEETTTEEEEEEEEEE----TTEEEEEEEEEEEEESSSSEEEEEEEEEEEEES--GGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             eccCcccceeEeecccc----ccchhcceeEEeeecccCCcEEEEEEEEEEECc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32222334444333222    256677888888888888999999999999854  234443332222334455666666


Q ss_pred             HHHHHhh
Q 009822          497 ARSYIKI  503 (524)
Q Consensus       497 ~~~~l~~  503 (524)
                      +++.+.+
T Consensus       140 ~~~~l~~  146 (147)
T d2pcsa1         140 IQKEIAK  146 (147)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhc
Confidence            6666543

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=90.48  E-value=2.8  Score=34.02  Aligned_cols=113  Identities=11%  Similarity=0.031  Sum_probs=66.5

Q ss_pred             eeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEec-
Q 009822          341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS-  419 (524)
Q Consensus       341 ~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~-  419 (524)
                      +.+..+|+.+||++++.|...+...........++.-++|.     .+..|.++|..-     +| ..  ..+|++... 
T Consensus         8 E~~~~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eGdg~-----~GsIr~~~~~~g-----~~-~~--~~kErl~~iD   74 (147)
T d1txca1           8 ETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGG-----VGTIKKITANEG-----DK-TS--FVLQKVDAID   74 (147)
T ss_dssp             EEEESSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEESSSS-----TTCEEEEEEEET-----TE-EE--EEEEEEEEEE
T ss_pred             EEeccCCHHHHHHhhhcccccCccccccccccceeecCCCC-----cceEEEEEEcCC-----Cc-ce--EEEEEEEEEc
Confidence            45667899999999988644444433233333444445442     356798888742     22 22  234566643 


Q ss_pred             CCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEee
Q 009822          420 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKK  470 (524)
Q Consensus       420 ~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K  470 (524)
                      .++..|..  +..--|++....-+......+.+.++++|.  |.+.+.|..
T Consensus        75 ~~~~~~~y--~iiEGd~l~~~~~s~~~~~~~~~~~~ggs~--vkw~~~y~~  121 (147)
T d1txca1          75 EANLGYDY--SIVGGTGLPESLEKLSFETKVVAGSGGGSI--SKVTLKFHT  121 (147)
T ss_dssp             GGGTEEEE--EEEESTTSCTTEEEEEEEEEEEECSTTCEE--EEEEEEEEE
T ss_pred             cCCcEEEE--EEEccCccccceEEEEEEEEEecCCCCCcE--EEEEEEEEE
Confidence            33334433  334467776666666667777777778886  456666654

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=90.22  E-value=3  Score=34.05  Aligned_cols=145  Identities=14%  Similarity=0.106  Sum_probs=84.1

Q ss_pred             eeeeEEecCHHHHHHHHcCCCCchHHHHHH-HcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEE
Q 009822          339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRA-ARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  417 (524)
Q Consensus       339 ~~~~~~~~s~~~lf~~lf~d~s~f~~~~~~-~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  417 (524)
                      ..+.+.++|+++||++|..|...++.+.+- ..+.-+  +..|-    ..+..|.++|.     .-|| ..  ..++++.
T Consensus         6 e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~sve--veGdG----~~GsIr~~~~~-----~~~~-~~--~~Kerve   71 (153)
T d2bk0a1           6 VLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE--IKGDG----GPGTLKIITLP-----DGGP-IT--TMTLRID   71 (153)
T ss_dssp             EEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEE--EESSS----STTCEEEEECC-----TTSS-CC--EEEEEEE
T ss_pred             EEEEeccCCHHHHHHHHhhcccccccccccceeeEEE--EECCC----CCCeEEEEEEe-----cCcc-ce--eeEEEEE
Confidence            456778899999999988754455565553 343333  34442    23677888883     1233 22  2345666


Q ss_pred             -ecCCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHH
Q 009822          418 -LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET  496 (524)
Q Consensus       418 -~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~  496 (524)
                       ...++..+..  +.---|+....+=++...+.+.+.++++|.++  +.++|.+-.  -....-.-....++.+-.+++.
T Consensus        72 ~iD~~~~~~~y--~viEGd~l~~~y~s~~~~~~~~~~~~ggsv~k--~t~eYe~~~--~~~~~~e~~k~~~e~~~~~~K~  145 (153)
T d2bk0a1          72 GVNKEALTFDY--SVIDGDILLGFIESIENHVVLVPTADGGSICK--TTAIFHTKG--DAVVPEENIKYANEQNTALFKA  145 (153)
T ss_dssp             EEETTTTEEEE--EEEESGGGTTTEEEEEEEEEEEECTTSCEEEE--EEEEEEEST--TCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecCccEEEE--EEEecccccccEEEEEEEEEEecCCCCCeEEE--EEEEEEECC--CCCCCHHHHHHHHHHHHHHHHH
Confidence             3434434433  22334444444556677778888887888666  455565521  1122223344556677888888


Q ss_pred             HHHHHhh
Q 009822          497 ARSYIKI  503 (524)
Q Consensus       497 ~~~~l~~  503 (524)
                      ++.+|-.
T Consensus       146 iE~YLla  152 (153)
T d2bk0a1         146 LEAYLIA  152 (153)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            8888754

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=89.73  E-value=3.6  Score=33.62  Aligned_cols=146  Identities=8%  Similarity=0.004  Sum_probs=86.6

Q ss_pred             eeEEecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEEe-c
Q 009822          341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL-S  419 (524)
Q Consensus       341 ~~~~~~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~-~  419 (524)
                      +.+.++|+++||++++.|...++.+.+...+..++..++     ...+..|.++|..     -+| ..  ..++++.. .
T Consensus         8 E~~~~v~a~klfka~~~d~~~l~pk~~~~i~s~e~~eGd-----Gg~GsIk~~~~~~-----~~~-~~--~~Kerie~iD   74 (155)
T d1icxa_           8 EQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGN-----GGPGTIKKIIAIH-----DGH-TS--FVLHKLDAID   74 (155)
T ss_dssp             EEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESS-----SSTTCEEEEEEES-----SSS-EE--EEEEEEEEEE
T ss_pred             eEEecCCHHHHhhhheeccchhchhhhhheeeeeEecCC-----CccceEEEEEecc-----CCc-eE--EEEEEEEEEc
Confidence            556788999999999886555666655433333443333     2236778888873     233 22  23566664 3


Q ss_pred             CCCCeEEEEEEEeeCCCCCCCeEEEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHHHHHHHHHH
Q 009822          420 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARS  499 (524)
Q Consensus       420 ~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~  499 (524)
                      .++..  +.-+.---|+-...+-++.....+.+.+.++|.++  +.++|.+-.   ..+.....+..++.+..+++.++.
T Consensus        75 ~en~~--~~y~viEGd~l~~~~~~~~~~~k~~~~~~~g~i~k--~t~eYe~~g---~~~~e~~~~~~ke~~~~~fK~iE~  147 (155)
T d1icxa_          75 EANLT--YNYSIIGGEGLDESLEKISYESKILPGPDGGSIGK--INVKFHTKG---DVLSETVRDQAKFKGLGLFKAIEG  147 (155)
T ss_dssp             GGGTE--EEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEE--EEEEEEESS---SSCCHHHHTTHHHHHHHHHHHHHH
T ss_pred             ccccE--EEEEEEecccccccEEEEEEEEEEecCCCCCeEEE--EEEEEEECC---CCCChhhHHHHHHHHHHHHHHHHH
Confidence            33333  33333334554444455566666677776778764  445565521   123444555677888899999999


Q ss_pred             HHhhcCC
Q 009822          500 YIKICTS  506 (524)
Q Consensus       500 ~l~~~~~  506 (524)
                      +|-.+..
T Consensus       148 YLlanPd  154 (155)
T d1icxa_         148 YVLAHPD  154 (155)
T ss_dssp             HHHHCTT
T ss_pred             HHhhCcC
Confidence            9987753

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.70  E-value=3.1  Score=35.22  Aligned_cols=146  Identities=12%  Similarity=0.095  Sum_probs=74.3

Q ss_pred             eeeeEEe-cCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccccccCCCCCcEEEEEEEeeccCCCCCceeeEeEEEEEE
Q 009822          339 IYNDVFP-CTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  417 (524)
Q Consensus       339 ~~~~~~~-~s~~~lf~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  417 (524)
                      -.+.+++ ++++.++.++..  .....++.....  +     .....+  .....+-+.....-|+.|+..-+... ...
T Consensus        48 k~~~~i~~~~~~~~~~~l~d--~~~~~~Wd~~~~--~-----~~~~~~--~~~~i~y~~~~~p~p~~~RD~v~~~~-~~~  115 (203)
T d1ln1a_          48 KVFGVLEDCSPTLLADIYMD--SDYRKQWDQYVK--E-----LYEQEC--NGETVVYWEVKYPFPMSNRDYVYLRQ-RRD  115 (203)
T ss_dssp             EEEEEETTSCHHHHHHHHHC--HHHHHHHCTTEE--E-----EEEEEE--TTEEEEEEEECCCTTSCCEEEEEEEE-EEE
T ss_pred             EEEEEEcCCCHHHHHHHHcC--HhHhhhhcccce--E-----EEEEcc--CCcEEEEEEcccccccCCceEEEEEE-EEE
Confidence            4577885 999999999875  333333211111  1     111111  12222223333334566664322222 222


Q ss_pred             ecCC-CCe-EEEEEEEeeCCCCCCCeE----EEEEEEEEEeeCCCCeEEEEEEEEEEeeeceeeeeeeccHHHHHHHHHH
Q 009822          418 LSPD-KKI-FVFETVQQAHDVPFGSYF----EIHGRWHLETIAENSSTIDIKVGAHFKKWCVIQFKIKTGAVNKYKKEVE  491 (524)
Q Consensus       418 ~~~~-~~~-~vv~~~~~~~dVPygd~F----~v~~r~~i~~~~~~~c~l~v~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~  491 (524)
                      ...+ +.. +++......+++|-..-+    .....|+|++.++++|++...+.+.-..+ +-+.++..-+.....+.++
T Consensus       116 ~~~~~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~  194 (203)
T d1ln1a_         116 LDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ-IPSWLINWAAKNGVPNFLK  194 (203)
T ss_dssp             ECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSC-CCHHHHHHHHHTHHHHHHH
T ss_pred             ccCCCCeEEEEEeecccCCcCcccCCccccceeeEEEEEEecCCCcEEEEEEEEcCCCCc-CHHHHHHHHHHHHHHHHHH
Confidence            2222 233 444444455777755433    23567999999999999999888877543 2233333334444444444


Q ss_pred             HHHHHH
Q 009822          492 LMLETA  497 (524)
Q Consensus       492 ~~~~~~  497 (524)
                      .+-+.+
T Consensus       195 ~l~k~~  200 (203)
T d1ln1a_         195 DMARAC  200 (203)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433