Citrus Sinensis ID: 009832

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520----
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSNIRLFFV
cEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcEEEEEEcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHcccccEEEEEEccccccHHHHHHHHccccccccccHHHHHHHHcccccccccccccccHHHHHHHHccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccEEcccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcEEEHHHHHHHHHHHcccEEEEc
cEEEEEEEccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHEHHHHHHHHHcHHHHEHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccccccHHHHHHHHHHHHHcccccEEEEEEccccccccccccEEEccccccccHHHHHHHHHHccccccEEccccHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccEEEcccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEc
MFAYISValgdtprfssFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNAlvevgpsiTLASLSEFLAFAvgsfipmpacRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEqqivlprdsylqgyfdntteylrvgpplYFVVKDynyssesrhtnqlcsisqcdsNSLLNEIsrassipelsyiakpaaswlddflvwtspeafgccrkfvngtycppddqppccspdeepcgvngvckdcttcfrhsdlvnnrpsteQFREKLPWFlnalpsadcakgghgaystsvdlngyesgiiqasefrtfhtplnkqgdyVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVsnirlffv
MFAYISvalgdtprfSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSNIRLFFV
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMfaalavlldfflQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYcppddqppccspdeepcGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAiilvvlvmividllGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSNIRLFFV
**AYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDD**PCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSNIRLFF*
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSNIRLFFV
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYS********LCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSNIRLFFV
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSNIRLFFV
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
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MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSNIRLFFV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query524 2.2.26 [Sep-21-2011]
P569411277 Niemann-Pick C1 protein O yes no 0.952 0.390 0.382 1e-100
O356041277 Niemann-Pick C1 protein O yes no 0.950 0.389 0.374 1e-100
O151181278 Niemann-Pick C1 protein O yes no 0.956 0.392 0.370 8e-99
Q6T3U3 1331 Niemann-Pick C1-like prot no no 0.954 0.375 0.376 2e-97
Q9UHC9 1359 Niemann-Pick C1-like prot no no 0.956 0.368 0.376 4e-89
Q6T3U4 1333 Niemann-Pick C1-like prot no no 0.954 0.375 0.369 3e-87
Q122001170 Niemann-Pick type C-relat yes no 0.872 0.390 0.328 1e-70
Q19127 1383 Niemann-Pick C1 protein h yes no 0.963 0.365 0.254 7e-46
P34389 1274 Niemann-Pick C1 protein h no no 0.904 0.372 0.254 3e-34
O35595 1182 Protein patched homolog 2 no no 0.244 0.108 0.372 2e-19
>sp|P56941|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1 Back     alignment and function desciption
 Score =  367 bits (941), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/565 (38%), Positives = 328/565 (58%), Gaps = 66/565 (11%)

Query: 1    MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
            MF YIS+ALG     S   V SK+ LG++G+++V+ SV  S+G FS IGV  TLI++EVI
Sbjct: 631  MFLYISIALGHIKSCSRLLVDSKISLGIAGILIVLSSVACSLGIFSYIGVPLTLIVIEVI 690

Query: 61   PFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSITLASLSEFLAFAVGS 118
            PFLVLAVGVDN+ ILV   +R        L+ ++   L EV PS+ L+S SE +AF +G 
Sbjct: 691  PFLVLAVGVDNIFILVQTYQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGG 750

Query: 119  FIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV------------------------- 153
               +PA   FS+FA +AVL+DF LQ+T FV+L+ +                         
Sbjct: 751  LSVVPAVHTFSLFAGMAVLIDFLLQITCFVSLLGLDIKRQEKNRLDVVCCVQGAEDGAGV 810

Query: 154  --------------HAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDS 199
                          +AP+L    ++ +V++VF+     SIA+  ++E GL+Q + +P DS
Sbjct: 811  QASESCLFRFFKNSYAPLLLKDWMRPIVIAVFVGVLSFSIAVLNKVEIGLDQSLSMPDDS 870

Query: 200  YLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSI 258
            Y+  YF + + YL  GPP+YFVV++ +NY+S  +  N +C    C+++SL+ +I  A+ +
Sbjct: 871  YVMDYFQSLSRYLHAGPPVYFVVEEGHNYTS-LKGQNMVCGGLGCNNDSLVQQIFTAAQL 929

Query: 259  PELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVC 318
               + I    +SW+DD+  W  P++  CCR + N T              ++ C  + V 
Sbjct: 930  DNYTRIGFAPSSWIDDYFDWIKPQS-SCCRVY-NST--------------DQFCNASVVD 973

Query: 319  KDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGII 378
              C  C   +     RP  E F   LP FL+  P+  C KGGH AYS++V++ G  SG +
Sbjct: 974  PTCIRCRPLTSEGKQRPQGEDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILGNGSG-V 1032

Query: 379  QASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKIN-----IFPYSVFYIFFEQYLD 433
             A+ F T+HT L    D++++++ AR  +S ++ T+ +      +FPYSVFY+F+EQYL 
Sbjct: 1033 GATYFMTYHTVLQASADFIDAMQKARLIASNITRTMGLEASSYRVFPYSVFYVFYEQYLT 1092

Query: 434  IWRVALINIAVALGAIFIVC-LLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVS 492
            +    + N+ V+LGAIF+V  +LM   LW++ I+ V + MI++++ GVM + GI LNAVS
Sbjct: 1093 VIDDTIFNLGVSLGAIFLVTVVLMGCELWATVIMCVTIAMILVNMFGVMWLWGISLNAVS 1152

Query: 493  VVNLIMSIGIAVEFCVHIVHAFLVS 517
            +VNL+MS GI+VEFC HI  AF +S
Sbjct: 1153 LVNLVMSCGISVEFCSHITRAFTLS 1177
Involved in the intracellular trafficking of cholesterol. May play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural and functional integrity of nerve terminals.
Sus scrofa (taxid: 9823)
>sp|O35604|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2 Back     alignment and function description
>sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2 Back     alignment and function description
>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1 SV=1 Back     alignment and function description
>sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2 Back     alignment and function description
>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q12200|NPC1_YEAST Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1 Back     alignment and function description
>sp|Q19127|NPC1_CAEEL Niemann-Pick C1 protein homolog 1 OS=Caenorhabditis elegans GN=ncr-1 PE=1 SV=2 Back     alignment and function description
>sp|P34389|NPC2_CAEEL Niemann-Pick C1 protein homolog 2 OS=Caenorhabditis elegans GN=ncr-2 PE=3 SV=2 Back     alignment and function description
>sp|O35595|PTC2_MOUSE Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query524
297744484 2090 unnamed protein product [Vitis vinifera] 0.988 0.247 0.795 0.0
224102795 1223 cholesterol transport protein [Populus t 0.988 0.423 0.790 0.0
359474967 1234 PREDICTED: niemann-Pick C1 protein [Viti 0.988 0.419 0.795 0.0
359491908 1309 PREDICTED: niemann-Pick C1 protein-like 0.988 0.395 0.766 0.0
297745553 1242 unnamed protein product [Vitis vinifera] 0.988 0.417 0.766 0.0
255539230 1235 hedgehog receptor, putative [Ricinus com 0.973 0.412 0.763 0.0
224086046 1274 cholesterol transport protein [Populus t 0.973 0.400 0.732 0.0
449455603 1244 PREDICTED: niemann-Pick C1 protein-like 0.988 0.416 0.735 0.0
356517933 1283 PREDICTED: niemann-Pick C1 protein-like 0.988 0.403 0.744 0.0
356509590 1257 PREDICTED: niemann-Pick C1 protein-like 0.988 0.412 0.738 0.0
>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/563 (79%), Positives = 483/563 (85%), Gaps = 45/563 (7%)

Query: 1    MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
            MFAYIS+ LGD  R SSFYVSSKVLLGLSGVI+VMLSVLGSVGFFSAIGVKSTLIIMEVI
Sbjct: 1434 MFAYISITLGDVSRLSSFYVSSKVLLGLSGVIVVMLSVLGSVGFFSAIGVKSTLIIMEVI 1493

Query: 61   PFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFI 120
            PFLVLAVGVDNMCILV+AVKRQ ++L LE RISNALVEVGPSITLASLSE LAFAVGSFI
Sbjct: 1494 PFLVLAVGVDNMCILVHAVKRQSLDLPLEGRISNALVEVGPSITLASLSEVLAFAVGSFI 1553

Query: 121  PMPACRVFSMFAALAVLLDFFLQVTAFVALI----------------------------- 151
            PMPACRVFSMFAALAVLLDF LQVTAFVALI                             
Sbjct: 1554 PMPACRVFSMFAALAVLLDFLLQVTAFVALIVFDFMRAEDNRIDCFPCIKIPSSSVESDE 1613

Query: 152  ----------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVL 195
                            EVHAPILG+WGVK+ V++ F AFT+ASIAL TRIE GLEQQIVL
Sbjct: 1614 GINQRKPGGLLAWYMQEVHAPILGIWGVKIFVIAAFFAFTLASIALCTRIEPGLEQQIVL 1673

Query: 196  PRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRA 255
            PRDSYLQGYF+N +EYLR+GPPLYFVVKDYNYSS+SRHTNQLCSI+QCDSNSLLNEISRA
Sbjct: 1674 PRDSYLQGYFNNVSEYLRIGPPLYFVVKDYNYSSDSRHTNQLCSINQCDSNSLLNEISRA 1733

Query: 256  SSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVN 315
            S +PE SYIAKPAASWLDDFLVW SPEAFGCCRKFVNG+YCPPDDQPPCCSPDE  C + 
Sbjct: 1734 SLVPESSYIAKPAASWLDDFLVWMSPEAFGCCRKFVNGSYCPPDDQPPCCSPDEGYCDLG 1793

Query: 316  GVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYES 375
            GVCKDCTTCFRHSDL + RPSTEQFREKLPWFLNALPSADCAKGGHGAY++SVDLNGYES
Sbjct: 1794 GVCKDCTTCFRHSDLNSGRPSTEQFREKLPWFLNALPSADCAKGGHGAYTSSVDLNGYES 1853

Query: 376  GIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIW 435
             +IQASEFRT+HTPLNKQ DYVNS+RAAREFSSR+SD LKI IFPYSVFY+FFEQYLDIW
Sbjct: 1854 SVIQASEFRTYHTPLNKQVDYVNSMRAAREFSSRVSDALKIQIFPYSVFYMFFEQYLDIW 1913

Query: 436  RVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVN 495
            R ALINIA+ALGA+FIVCL++TSS+WSSAIIL+VL MI++DL+GVMA L IQLNAVSVVN
Sbjct: 1914 RTALINIAIALGAVFIVCLVITSSVWSSAIILLVLAMIIVDLMGVMACLDIQLNAVSVVN 1973

Query: 496  LIMSIGIAVEFCVHIVHAFLVSN 518
            LIMSIGIAVEFCVHI HAF VS 
Sbjct: 1974 LIMSIGIAVEFCVHISHAFSVSQ 1996

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102795|ref|XP_002312804.1| cholesterol transport protein [Populus trichocarpa] gi|222849212|gb|EEE86759.1| cholesterol transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359474967|ref|XP_002279611.2| PREDICTED: niemann-Pick C1 protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|359491908|ref|XP_002272383.2| PREDICTED: niemann-Pick C1 protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745553|emb|CBI40718.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539230|ref|XP_002510680.1| hedgehog receptor, putative [Ricinus communis] gi|223551381|gb|EEF52867.1| hedgehog receptor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224086046|ref|XP_002307793.1| cholesterol transport protein [Populus trichocarpa] gi|222857242|gb|EEE94789.1| cholesterol transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449455603|ref|XP_004145542.1| PREDICTED: niemann-Pick C1 protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356517933|ref|XP_003527640.1| PREDICTED: niemann-Pick C1 protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356509590|ref|XP_003523530.1| PREDICTED: niemann-Pick C1 protein-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query524
TAIR|locus:20358781272 AT1G42470 [Arabidopsis thalian 0.692 0.285 0.694 2.9e-196
UNIPROTKB|F1SBB51277 NPC1 "Niemann-Pick C1 protein" 0.660 0.270 0.363 1.5e-86
UNIPROTKB|P569411277 NPC1 "Niemann-Pick C1 protein" 0.660 0.270 0.363 1.5e-86
MGI|MGI:10977121277 Npc1 "Niemann Pick type C1" [M 0.652 0.267 0.367 1.8e-86
UNIPROTKB|F1SSH5 1332 NPC1L1 "Uncharacterized protei 0.662 0.260 0.371 6.4e-86
UNIPROTKB|Q9UHC9 1359 NPC1L1 "Niemann-Pick C1-like p 0.471 0.181 0.369 8.1e-86
UNIPROTKB|F1PB501277 NPC1 "Uncharacterized protein" 0.656 0.269 0.360 9e-86
UNIPROTKB|B4DET3960 NPC1 "Niemann-Pick C1 protein" 0.662 0.361 0.353 1.9e-85
UNIPROTKB|K7EQ23971 NPC1 "Niemann-Pick C1 protein" 0.662 0.357 0.353 2.1e-85
UNIPROTKB|Q9TT751286 NPC1 "Niemann-Pick type C1 dis 0.656 0.267 0.361 3.9e-85
TAIR|locus:2035878 AT1G42470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1361 (484.2 bits), Expect = 2.9e-196, Sum P(2) = 2.9e-196
 Identities = 252/363 (69%), Positives = 299/363 (82%)

Query:   152 EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEY 211
             EVHAP+L  W VK+VV++ F    +A IALSTRIE GLEQQIVLP+DSYLQGYF+N + Y
Sbjct:   802 EVHAPVLSHWIVKIVVIAFFFGLAMAGIALSTRIEPGLEQQIVLPQDSYLQGYFNNISTY 861

Query:   212 LRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASW 271
             LR+GPPLYFV+K+YNYSSESRHTNQLCSI++C+ NSLLNEI+RAS  PELSYIAKPAASW
Sbjct:   862 LRIGPPLYFVLKNYNYSSESRHTNQLCSINKCNPNSLLNEIARASLTPELSYIAKPAASW 921

Query:   272 LDDFLVWTSPEAFGCCRKFVNGTYXXXXXXXXXXXXXXXXXGVNGVCKDCTTCFRHSDLV 331
             LDDFLVW SPEAFGCCRKF NGT+                 G++ VCKDCTTCFRH+DL 
Sbjct:   922 LDDFLVWLSPEAFGCCRKFTNGTFCPPDDQPPCCPPGQTSCGLSEVCKDCTTCFRHADLS 981

Query:   332 NNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLN 391
             ++RPST QF+EKLPWFLNALPSADCAKGGHGAYS+SVDL GY +GIIQAS FRT+HTPLN
Sbjct:   982 SDRPSTTQFKEKLPWFLNALPSADCAKGGHGAYSSSVDLQGYANGIIQASSFRTYHTPLN 1041

Query:   392 KQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFI 451
             KQ D+VNS+RAA+EFS+++S +LK+ I+PYSVFY+FFEQYLDIW+ ALIN+++A+ A+F+
Sbjct:  1042 KQVDFVNSMRAAQEFSAKVSRSLKMEIYPYSVFYMFFEQYLDIWKTALINLSIAIAAVFV 1101

Query:   452 VCLLMTSSLWSSAXXXXXXXXXXXXXXGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIV 511
             VCL++T S WSSA              GVMA+  IQLNA+SVVNLIMS+GIAVEFCVHI 
Sbjct:  1102 VCLIITCSFWSSAIILLVIAMIIIDLLGVMAVFHIQLNALSVVNLIMSVGIAVEFCVHIT 1161

Query:   512 HAF 514
             HAF
Sbjct:  1162 HAF 1164
GO:0008158 "hedgehog receptor activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
UNIPROTKB|F1SBB5 NPC1 "Niemann-Pick C1 protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P56941 NPC1 "Niemann-Pick C1 protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1097712 Npc1 "Niemann Pick type C1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SSH5 NPC1L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UHC9 NPC1L1 "Niemann-Pick C1-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PB50 NPC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B4DET3 NPC1 "Niemann-Pick C1 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|K7EQ23 NPC1 "Niemann-Pick C1 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9TT75 NPC1 "Niemann-Pick type C1 disease protein" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_IX0199
cholesterol transport protein (1224 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
TIGR009171204 TIGR00917, 2A060601, Niemann-Pick C type protein f 0.0
pfam12349153 pfam12349, Sterol-sensing, Sterol-sensing domain o 1e-49
pfam02460801 pfam02460, Patched, Patched family 2e-28
TIGR009181145 TIGR00918, 2A060602, The Eukaryotic (Putative) Ste 7e-21
TIGR00918 1145 TIGR00918, 2A060602, The Eukaryotic (Putative) Ste 1e-17
pfam02460801 pfam02460, Patched, Patched family 3e-14
COG1033727 COG1033, COG1033, Predicted exporters of the RND s 6e-06
TIGR03480862 TIGR03480, HpnN, hopanoid biosynthesis associated 6e-06
COG1033 727 COG1033, COG1033, Predicted exporters of the RND s 1e-05
COG1033727 COG1033, COG1033, Predicted exporters of the RND s 3e-05
TIGR00921 719 TIGR00921, 2A067, The (Largely Archaeal Putative) 2e-04
TIGR00921719 TIGR00921, 2A067, The (Largely Archaeal Putative) 3e-04
TIGR00920 889 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-co 0.003
>gnl|CDD|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family Back     alignment and domain information 
 Score =  607 bits (1568), Expect = 0.0
 Identities = 288/577 (49%), Positives = 377/577 (65%), Gaps = 88/577 (15%)

Query: 1    MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
            MFAYIS++LG + RF S ++ SKVLLG+SGV++V+ SV+GSVG FS IG+K+TLIIMEVI
Sbjct: 582  MFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVI 641

Query: 61   PFLVLAVGVDNMCILVNA------VKRQP-----MELVLETRISNALVEVGPSITLASLS 109
            PFLVLAVGVDN+ ILV          R+       EL LE ++  AL EVGPSITLASLS
Sbjct: 642  PFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLASLS 701

Query: 110  EFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI------------------ 151
            E LAF +G+   MPA R FS+FA LAV +DF LQ+TAFVAL+                  
Sbjct: 702  ESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVALLVLDFKRTEDNRVDCFPCI 761

Query: 152  --------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRI 185
                                      EV+AP L  W VK+VV++ F    +  IAL+TRI
Sbjct: 762  KGSKSSISAEKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRI 821

Query: 186  EAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVK-DYNYSSESRHTNQLCSISQCD 244
            + GL+QQ+ LP+DSYLQ YF + T  L VGPP+YFV+K DYNY+  S   N++C+   C+
Sbjct: 822  DIGLDQQLALPQDSYLQIYFASLTPLLEVGPPVYFVLKGDYNYTD-SESQNKVCTGGGCN 880

Query: 245  SNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPC 304
             +S++N  +       L+YIAKPA+SWLDD+  W SP++  CCRKF NGT+C   D    
Sbjct: 881  KDSIVNVFN------NLTYIAKPASSWLDDYFDWASPQSSCCCRKFTNGTFCNGPD---- 930

Query: 305  CSPDEEPCGVNGVCKDCTTCFRHSDLVNN---RPSTEQFREKLPWFLNALPSADCAKGGH 361
                              +CFR +DL +N   RPST QF+E LP+FLN  PSADCAKGGH
Sbjct: 931  -----------------PSCFRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGH 973

Query: 362  GAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPY 421
             AYS++VDL G+ + IIQAS F T+HTPLN Q D++N+LRAARE S+ ++ +LK+ +FPY
Sbjct: 974  AAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPY 1033

Query: 422  SVFYIFFEQYLDIWRVALINIAVALGAIFIVCL-LMTSSLWSSAIILVVLVMIVIDLLGV 480
            SVFY+FFEQYL IW  ALIN+ ++LGAIFIV L L+  +  S+  +++ + MIV++L+G+
Sbjct: 1034 SVFYVFFEQYLTIWSDALINLGISLGAIFIVTLVLLGLNALSAVNVVISVGMIVVNLVGI 1093

Query: 481  MAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS 517
            M +  I LNAVSVVNL+M+ GI++EFC HI   F  S
Sbjct: 1094 MHLWNISLNAVSVVNLVMAKGISIEFCSHINAQFSTS 1130

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis [Transport and binding proteins, Other]. Length = 1204
>gnl|CDD|192997 pfam12349, Sterol-sensing, Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>gnl|CDD|217050 pfam02460, Patched, Patched family Back     alignment and domain information
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>gnl|CDD|217050 pfam02460, Patched, Patched family Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|234225 TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 524
TIGR009171204 2A060601 Niemann-Pick C type protein family. The m 100.0
KOG1934 868 consensus Predicted membrane protein (patched supe 100.0
PF02460798 Patched: Patched family; InterPro: IPR003392 The t 100.0
TIGR009181145 2A060602 The Eukaryotic (Putative) Sterol Transpor 100.0
KOG19331201 consensus Cholesterol transport protein (Niemann-P 100.0
KOG1935 1143 consensus Membrane protein Patched/PTCH [Signal tr 100.0
COG1033727 Predicted exporters of the RND superfamily [Genera 100.0
TIGR00921719 2A067 The (Largely Archaeal Putative) Hydrophobe/A 100.0
TIGR00833 910 actII Transport protein. Characterized members of 100.0
TIGR03480862 HpnN hopanoid biosynthesis associated RND transpor 99.97
PF12349153 Sterol-sensing: Sterol-sensing domain of SREBP cle 99.94
TIGR00920 886 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red 99.92
TIGR00921 719 2A067 The (Largely Archaeal Putative) Hydrophobe/A 99.79
COG1033727 Predicted exporters of the RND superfamily [Genera 99.69
PRK13024755 bifunctional preprotein translocase subunit SecD/S 99.69
PF03176333 MMPL: MMPL family; InterPro: IPR004869 Proteins of 99.68
PRK10614 1025 multidrug efflux system subunit MdtC; Provisional 99.63
TIGR00915 1044 2A0602 The (Largely Gram-negative Bacterial) Hydro 99.56
PRK09579 1017 multidrug efflux protein; Reviewed 99.55
TIGR00914 1051 2A0601 heavy metal efflux pump (cobalt-zinc-cadmiu 99.54
PRK10503 1040 multidrug efflux system subunit MdtB; Provisional 99.53
PRK14726855 bifunctional preprotein translocase subunit SecD/S 99.51
PRK09577 1032 multidrug efflux protein; Reviewed 99.48
PRK10555 1037 aminoglycoside/multidrug efflux system; Provisiona 99.46
TIGR03480862 HpnN hopanoid biosynthesis associated RND transpor 99.45
PRK15127 1049 multidrug efflux system protein AcrB; Provisional 99.44
PRK13023758 bifunctional preprotein translocase subunit SecD/S 99.43
COG2409 937 Predicted drug exporters of the RND superfamily [G 99.39
TIGR00916192 2A0604s01 protein-export membrane protein, SecD/Se 99.37
TIGR00833910 actII Transport protein. Characterized members of 99.33
PF00873 1021 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010 99.32
PRK13022289 secF preprotein translocase subunit SecF; Reviewed 99.29
PF03176333 MMPL: MMPL family; InterPro: IPR004869 Proteins of 99.27
COG4258788 Predicted exporter [General function prediction on 99.22
TIGR009181145 2A060602 The Eukaryotic (Putative) Sterol Transpor 99.18
COG0841 1009 AcrB Cation/multidrug efflux pump [Defense mechani 99.14
TIGR00966246 3a0501s07 protein-export membrane protein SecF. Th 98.98
TIGR01129397 secD protein-export membrane protein SecD. SecD fr 98.93
PRK05812498 secD preprotein translocase subunit SecD; Reviewed 98.93
PF02460798 Patched: Patched family; InterPro: IPR003392 The t 98.92
PF02355189 SecD_SecF: Protein export membrane protein; InterP 98.89
PRK08578292 preprotein translocase subunit SecF; Reviewed 98.83
PRK129111403 bifunctional preprotein translocase subunit SecD/S 98.82
PRK13024755 bifunctional preprotein translocase subunit SecD/S 98.78
PRK13021297 secF preprotein translocase subunit SecF; Reviewed 98.71
PRK12933604 secD preprotein translocase subunit SecD; Reviewed 98.65
TIGR009141051 2A0601 heavy metal efflux pump (cobalt-zinc-cadmiu 98.56
TIGR00916192 2A0604s01 protein-export membrane protein, SecD/Se 98.5
PRK14726855 bifunctional preprotein translocase subunit SecD/S 98.48
TIGR009171204 2A060601 Niemann-Pick C type protein family. The m 98.45
PRK10555 1037 aminoglycoside/multidrug efflux system; Provisiona 98.38
PRK09579 1017 multidrug efflux protein; Reviewed 98.33
PRK09577 1032 multidrug efflux protein; Reviewed 98.33
TIGR009151044 2A0602 The (Largely Gram-negative Bacterial) Hydro 98.3
PRK151271049 multidrug efflux system protein AcrB; Provisional 98.29
PRK10614 1025 multidrug efflux system subunit MdtC; Provisional 98.26
TIGR00966246 3a0501s07 protein-export membrane protein SecF. Th 98.19
PRK08343417 secD preprotein translocase subunit SecD; Reviewed 98.19
COG0841 1009 AcrB Cation/multidrug efflux pump [Defense mechani 98.18
PRK105031040 multidrug efflux system subunit MdtB; Provisional 98.16
KOG3664 999 consensus Predicted patched transmembrane receptor 98.16
KOG1934868 consensus Predicted membrane protein (patched supe 98.14
COG0341305 SecF Preprotein translocase subunit SecF [Intracel 98.13
PRK08578292 preprotein translocase subunit SecF; Reviewed 98.13
PF008731021 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010 98.06
COG4258788 Predicted exporter [General function prediction on 98.0
TIGR01129397 secD protein-export membrane protein SecD. SecD fr 97.97
COG3696 1027 Putative silver efflux pump [Inorganic ion transpo 97.96
PRK13022289 secF preprotein translocase subunit SecF; Reviewed 97.93
PRK129111403 bifunctional preprotein translocase subunit SecD/S 97.89
COG0342506 SecD Preprotein translocase subunit SecD [Intracel 97.86
PRK13023758 bifunctional preprotein translocase subunit SecD/S 97.86
PRK05812498 secD preprotein translocase subunit SecD; Reviewed 97.46
KOG19351143 consensus Membrane protein Patched/PTCH [Signal tr 97.19
PF02355189 SecD_SecF: Protein export membrane protein; InterP 97.18
PRK08343417 secD preprotein translocase subunit SecD; Reviewed 97.16
COG2409937 Predicted drug exporters of the RND superfamily [G 97.16
PRK12933604 secD preprotein translocase subunit SecD; Reviewed 96.66
PRK13021297 secF preprotein translocase subunit SecF; Reviewed 96.33
COG3696 1027 Putative silver efflux pump [Inorganic ion transpo 96.07
COG0341305 SecF Preprotein translocase subunit SecF [Intracel 95.96
COG0342506 SecD Preprotein translocase subunit SecD [Intracel 93.79
PF12349153 Sterol-sensing: Sterol-sensing domain of SREBP cle 92.92
>TIGR00917 2A060601 Niemann-Pick C type protein family Back     alignment and domain information 
Probab=100.00  E-value=1.6e-81  Score=724.81  Aligned_cols=492  Identities=57%  Similarity=0.973  Sum_probs=443.1

Q ss_pred             CeeehhhhhcCccccceeeeecchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHh
Q 009832            1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK   80 (524)
Q Consensus         1 ~~~~v~~~l~~~~~~~~~~v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~   80 (524)
                      |++|+++++|++.+..++++|||++||++|++++++|+++++|+++|+|++++++++.++|||++|||+||+|+++++|+
T Consensus       582 m~~y~~l~l~~~~~~~~~~v~Sk~~l~l~gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~  661 (1204)
T TIGR00917       582 MFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQ  661 (1204)
T ss_pred             HHHHHHHHHccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            68899999999876667899999999999999999999999999999999999867899999999999999999999998


Q ss_pred             hccC--C---------CCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832           81 RQPM--E---------LVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVA  149 (524)
Q Consensus        81 ~~~~--~---------~~~~~~i~~~l~~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa  149 (524)
                      +..+  +         .+.++|++++++++|+||++|++|+++||+++.++++|++|.||+++++|++++|++++|+|||
T Consensus       662 r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~a  741 (1204)
T TIGR00917       662 RLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVA  741 (1204)
T ss_pred             HhhhccccccccccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7432  1         2789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH--------------------------------------------HhhhcccccCcchhhhHHHHHHHHHHHHHhhhcc
Q 009832          150 LI--------------------------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRI  185 (524)
Q Consensus       150 ~l--------------------------------------------~~~~~~l~~~~~k~~v~~~~~~~~~~si~g~~~i  185 (524)
                      +|                                            +.|+|++.++++|++|+++|++++++|+||+.++
T Consensus       742 lL~ld~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si~g~~~i  821 (1204)
T TIGR00917       742 LLVLDFKRTEDNRVDCFPCIKGSKSSISAEKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRI  821 (1204)
T ss_pred             HHHHHHHHHHcCCccEEEeecccccccccccCcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHHHHHhhc
Confidence            99                                            1367889999999999999999999999999999


Q ss_pred             cccccccccCCCCchhhhHHHHHhhhcCCCCcEEEEEe-cCCCCchhhhhhhhhcccccCcccHHHHHHHhccCCCCccc
Q 009832          186 EAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVK-DYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYI  264 (524)
Q Consensus       186 ~~~~~~~~~~p~~s~~~~~~~~~~~~f~~~~~v~iv~~-~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~  264 (524)
                      +.|+|+++++|+|||+.++++.++++|..|+|+++|++ +.||++++ .|+++|....|+.+++.++.      ++.+++
T Consensus       822 ~~gLd~~~~~p~dSyl~~yf~~~~~~~~~gppvy~Vv~~~~dy~~~~-~q~~lc~~~~c~~~sl~~~~------~~~~~i  894 (1204)
T TIGR00917       822 DIGLDQQLALPQDSYLQIYFASLTPLLEVGPPVYFVLKGDYNYTDSE-SQNKVCTGGGCNKDSIVNVF------NNLTYI  894 (1204)
T ss_pred             CCCcCHhhhCCCCCcHHHHHHHHHHhhccCCcEEEEEcCCCCCCCHH-HHHHHhcccCCcHHHHHHhh------cccchh
Confidence            99999999999999999999999999999999999999 68999874 67789988899999988743      445677


Q ss_pred             cCCCCchHHHHHhhcCcCcccccc-cccCCcccCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhh
Q 009832          265 AKPAASWLDDFLVWTSPEAFGCCR-KFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREK  343 (524)
Q Consensus       265 ~~~~~~Wl~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~  343 (524)
                      .+++.+|++||.+|+++.. +||+ +..++.+|++.+                  ++|.+|++........|++++|+++
T Consensus       895 ~~~~~sWlddf~~wl~~~~-~cc~~~~~~~~~c~~~~------------------~~~~~c~~~~~~~~~~p~~~~F~~~  955 (1204)
T TIGR00917       895 AKPASSWLDDYFDWASPQS-SCCCRKFTNGTFCNGPD------------------PSCFRCADLSSNAQGRPSTTQFKEY  955 (1204)
T ss_pred             cCCchHHHHHHHHHhCccc-cceeecCCCCCcCCCcc------------------ccccccccccccccCCCCHHHHHHH
Confidence            7889999999999998753 5664 345666665221                  3455555422222347888999999


Q ss_pred             hHHHhhhCCCCcccCCCCCccccceeccCCCCCeeEeeeEEEeecccCChhHHHHHHHHHHHHHHhhhhccCCcccccch
Q 009832          344 LPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSV  423 (524)
Q Consensus       344 l~~fl~~~p~~~c~~~~~~~y~~~~~~~~~~~~~I~~sr~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~~  423 (524)
                      |++|++..|+.+|++||+..|++++++++++.+.|.+|||+++|+++++++|++++++++|+++++++++.++++|||+.
T Consensus       956 l~~fl~~~~~~~c~~gg~~~y~~~v~~~~~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~~~~~vfpys~ 1035 (1204)
T TIGR00917       956 LPFFLNDNPSADCAKGGHAAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPYSV 1035 (1204)
T ss_pred             HHHHhcCCCccccccccccccccceEeecCCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhccCCccccCcC
Confidence            99999988889999999999999998876545679999999999999999999999999999999987656899999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhh
Q 009832          424 FYIFFEQYLDIWRVALINIAVALGAIFIVCLLMT-SSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGI  502 (524)
Q Consensus       424 ~f~f~eq~~~i~~~~~~~l~ia~~~vfvv~llli-~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~  502 (524)
                      .|+|+|||+.+++.+++++++++++|++++++++ .++++++++++++.++.++++|+|.+||++||++|+++++||||+
T Consensus      1036 ~~vf~eQY~~i~~~~~~~l~~a~~~v~~V~~l~l~l~~~~aliv~l~I~~i~~~~~g~M~~~gisLN~vSlv~Li~avGi 1115 (1204)
T TIGR00917      1036 FYVFFEQYLTIWSDALINLGISLGAIFIVTLVLLGLNALSAVNVVISVGMIVVNLVGIMHLWNISLNAVSVVNLVMAKGI 1115 (1204)
T ss_pred             ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999998 699999999999999999999999999999999999999999999


Q ss_pred             eechhHHHHHHHHhcc
Q 009832          503 AVEFCVHIVHAFLVSN  518 (524)
Q Consensus       503 sVDfsaHi~~~f~~s~  518 (524)
                      ||||++|+.|+|..++
T Consensus      1116 sV~f~~hI~~~f~~~~ 1131 (1204)
T TIGR00917      1116 SIEFCSHINAQFSTSK 1131 (1204)
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999999874

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only] Back     alignment and domain information
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog Back     alignment and domain information
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism] Back     alignment and domain information
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms] Back     alignment and domain information
>COG1033 Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>TIGR00833 actII Transport protein Back     alignment and domain information
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>COG1033 Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria Back     alignment and domain information
>PRK10614 multidrug efflux system subunit MdtC; Provisional Back     alignment and domain information
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family Back     alignment and domain information
>PRK09579 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium) Back     alignment and domain information
>PRK10503 multidrug efflux system subunit MdtB; Provisional Back     alignment and domain information
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional Back     alignment and domain information
>PRK09577 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10555 aminoglycoside/multidrug efflux system; Provisional Back     alignment and domain information
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>PRK15127 multidrug efflux system protein AcrB; Provisional Back     alignment and domain information
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family Back     alignment and domain information
>TIGR00833 actII Transport protein Back     alignment and domain information
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors [] Back     alignment and domain information
>PRK13022 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria Back     alignment and domain information
>COG4258 Predicted exporter [General function prediction only] Back     alignment and domain information
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>TIGR00966 3a0501s07 protein-export membrane protein SecF Back     alignment and domain information
>TIGR01129 secD protein-export membrane protein SecD Back     alignment and domain information
>PRK05812 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog Back     alignment and domain information
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>PRK08578 preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PRK13021 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PRK12933 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium) Back     alignment and domain information
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family Back     alignment and domain information
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional Back     alignment and domain information
>TIGR00917 2A060601 Niemann-Pick C type protein family Back     alignment and domain information
>PRK10555 aminoglycoside/multidrug efflux system; Provisional Back     alignment and domain information
>PRK09579 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09577 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family Back     alignment and domain information
>PRK15127 multidrug efflux system protein AcrB; Provisional Back     alignment and domain information
>PRK10614 multidrug efflux system subunit MdtC; Provisional Back     alignment and domain information
>TIGR00966 3a0501s07 protein-export membrane protein SecF Back     alignment and domain information
>PRK08343 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10503 multidrug efflux system subunit MdtB; Provisional Back     alignment and domain information
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms] Back     alignment and domain information
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only] Back     alignment and domain information
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK08578 preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors [] Back     alignment and domain information
>COG4258 Predicted exporter [General function prediction only] Back     alignment and domain information
>TIGR01129 secD protein-export membrane protein SecD Back     alignment and domain information
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13022 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PRK05812 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms] Back     alignment and domain information
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>PRK08343 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>PRK12933 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PRK13021 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion] Back     alignment and domain information
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 60/438 (13%), Positives = 122/438 (27%), Gaps = 154/438 (35%)

Query: 51  KSTLIIM------EVI-PFLVLAVGVDNMC-ILVNAVKRQPMELVLETRISN-ALVEVGP 101
           ++ L+++      +    F       +  C IL+    +Q  + +     ++ +L     
Sbjct: 244 ENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 102 SITLASLSEFLAFAVG---SFIPMPAC----RVFSMFAAL----AVLLDFFLQVTAFVAL 150
           ++T   +   L   +      +P        R  S+ A          D +  V      
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN----- 351

Query: 151 IEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTE 210
                                         L+T IE+ L         +  +  F    +
Sbjct: 352 ---------------------------CDKLTTIIESSLNVL----EPAEYRKMF----D 376

Query: 211 YLRVGPPLYFVVKDYNYSS--------ESRHTNQLCSISQCDSNSLLNE--ISRASSIPE 260
            L V P         +  +        +   ++ +  +++    SL+ +       SIP 
Sbjct: 377 RLSVFP------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 261 LSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNG-----TYCPPDDQPPCCSPDEEPCGVN 315
           +          L+  L       +   R  V+      T+   D  PP            
Sbjct: 431 IY---------LE--LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY----------- 468

Query: 316 GVCKDCTTCF---RHSDLVNNRPSTEQFREKLPWFLN---------ALPSADCAKGGHGA 363
               D         H   + +      FR     FL+            +A  A G    
Sbjct: 469 ---LDQYFYSHIGHHLKNIEHPERMTLFRM---VFLDFRFLEQKIRHDSTAWNASGS--I 520

Query: 364 YSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSV 423
            +T   L  Y+  I         + P  ++   VN++    +F  ++ + L  +      
Sbjct: 521 LNTLQQLKFYKPYICD-------NDPKYER--LVNAIL---DFLPKIEENLICS------ 562

Query: 424 FYIFFEQYLDIWRVALIN 441
                 +Y D+ R+AL+ 
Sbjct: 563 ------KYTDLLRIALMA 574

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query524
3aqp_A741 Probable secdf protein-export membrane protein; tr 99.89
2v50_A 1052 Multidrug resistance protein MEXB; DDM, RND, membr 99.85
4dx5_A 1057 Acriflavine resistance protein B; multidrug efflux 99.84
3ne5_A 1054 Cation efflux system protein CUSA; transmembrane h 99.83
3aqp_A741 Probable secdf protein-export membrane protein; tr 99.32
4dx5_A1057 Acriflavine resistance protein B; multidrug efflux 99.2
2v50_A1052 Multidrug resistance protein MEXB; DDM, RND, membr 99.09
3ne5_A1054 Cation efflux system protein CUSA; transmembrane h 99.08
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A Back     alignment and structure
Probab=99.89  E-value=2.5e-20  Score=208.21  Aligned_cols=342  Identities=15%  Similarity=0.165  Sum_probs=228.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc-CCCCHHHHHHHHHhhhhhH
Q 009832           24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEVGPS  102 (524)
Q Consensus        24 ~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~-~~~~~~~~i~~~l~~~g~~  102 (524)
                      ++.++..++++.+++++++|++.++|.++|. .+...+.+.+|+++||.+|+.++|+++. ++.+.++++.+++++++.|
T Consensus       295 ~~~~li~~~~l~~~i~~~~~~l~l~g~~l~l-~~i~glil~iGi~VD~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~  373 (741)
T 3aqp_A          295 PHLGLVASLGLLYTSALILGLLSGLGATLTL-PGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLT  373 (741)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCBCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhchhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            4468888899999999999999999999997 6778889999999999999999998874 5678999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------ccccCcchhhhHH
Q 009832          103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP-------------ILGLWGVKMVVVS  169 (524)
Q Consensus       103 i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~~~-------------~l~~~~~k~~v~~  169 (524)
                      ++.|++||+++|+.+.+++.+++|.||+..++|++++++.++++.|+++..+.+             .+..-..|..+++
T Consensus       374 Il~s~lTt~i~f~~L~~~~~~~~~~fa~~~~~gi~~s~~~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~  453 (741)
T 3aqp_A          374 IMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPPMWLVDPRFNFMGPARYVTA  453 (741)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCCCSTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccchhhHHhhhHHHHH
Confidence            999999999999999999999999999999999999999999999999843211             0000011333444


Q ss_pred             HHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHhhhcCCCCcEEEEEecCCCCchhhhhhhhhcccccCcccHH
Q 009832          170 VFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLL  249 (524)
Q Consensus       170 ~~~~~~~~si~g~~~i~~~~~~~~~~p~~s~~~~~~~~~~~~f~~~~~v~iv~~~~d~~~~~~~~~~~~~~~~~~~~~l~  249 (524)
                      +.++++++++++...  .+++      .+           ..|.++.++.+..++ +. +.+               .+.
T Consensus       454 i~~vl~~~~~~~~~~--~~~~------~~-----------~~f~Gg~~i~v~~~~-~~-~~~---------------~l~  497 (741)
T 3aqp_A          454 ATLLLAALAAGVVFA--KGFN------YS-----------IDFTGGTAYTLRAEP-NV-EVE---------------TLR  497 (741)
T ss_dssp             HHHHHHHHHHHHHHH--HTCC------CC-----------HHHHCEEEEEEEECT-TC-CHH---------------HHH
T ss_pred             HHHHHHHHHHHHHhh--ccCC------cc-----------eecCCCcEEEEEECC-CC-CHH---------------HHH
Confidence            445555566655421  1111      11           112233344444432 11 000               011


Q ss_pred             HHHHHhccCCCCccccCCCCchHHHHHhhcCcCcccccccccCCcccCCCCCCCCCCCCCCCCCCCCcccCCCcccccCC
Q 009832          250 NEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSD  329 (524)
Q Consensus       250 ~~i~~~~~~~~~~~~~~~~~~Wl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (524)
                      +.+++. ..+                                ++      +.                            
T Consensus       498 ~~l~~~-g~~--------------------------------~~------~~----------------------------  510 (741)
T 3aqp_A          498 RFLEEK-GFP--------------------------------GK------EA----------------------------  510 (741)
T ss_dssp             HHHHTT-TSC--------------------------------SS------SC----------------------------
T ss_pred             HHHHhc-CCC--------------------------------CC------ch----------------------------
Confidence            111110 000                                00      00                            


Q ss_pred             CCCCCCChhHHHhhhHHHhhhCCCCcccCCCCCccccceeccCCCCCeeEeeeEEEeecccCChhHHHHHHHHHHHHHHh
Q 009832          330 LVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSR  409 (524)
Q Consensus       330 ~~~~~p~~~~f~~~l~~fl~~~p~~~c~~~~~~~y~~~~~~~~~~~~~I~~sr~~~~~~~~~~~~~~~~~~~~~r~i~~~  409 (524)
                            ..+.       +           |      .+     .+.+    .++.+...+. +.++..+..+++|+   .
T Consensus       511 ------~v~~-------~-----------g------~~-----~~~~----~~~~v~~~~~-~~~~~~~l~~~l~~---~  547 (741)
T 3aqp_A          511 ------VITQ-------V-----------Q------AP-----TAAY----REFLVKLPPL-SDERRLELERLFAS---E  547 (741)
T ss_dssp             ------EEEE-------C----------------------------C----EEEEEEESCC-CHHHHHHHHHHHHH---H
T ss_pred             ------hhhh-------c-----------c------CC-----CcCc----eEEEEEeCCC-CHHHHHHHHHHHHH---h
Confidence                  0000       0           0      00     0000    0122222221 23333333333332   2


Q ss_pred             hhhccCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 009832          410 MSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLN  489 (524)
Q Consensus       410 ~~~~~~~~~~~~~~~f~f~eq~~~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln  489 (524)
                      ++. .+++....|.     +....+.++.+..+.+++++++++..+.+ +++.++++++++....++.+|+|+++|+++|
T Consensus       548 ~~~-~~~~~~~vG~-----~~~~~~~~~~~~al~lali~i~l~l~~~F-s~~~~l~~l~~l~~~~~~~~g~l~l~g~~l~  620 (741)
T 3aqp_A          548 LKA-TVLASETVGP-----AIGEELRRNAVMAVLVGLGLILLYVAFRF-DWTFGVASILAVAHDVAIVAGMYSLLGLEFS  620 (741)
T ss_dssp             SSS-CCCEEEEECH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             cCC-CceEEEEecH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            221 1223222333     44445667788888888888888776655 9999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhheechhHHHHHHHHhccc
Q 009832          490 AVSVVNLIMSIGIAVEFCVHIVHAFLVSNI  519 (524)
Q Consensus       490 ~iS~i~l~msIG~sVDfsaHi~~~f~~s~~  519 (524)
                      ..+++.+++.+|++|||++|+.++|....+
T Consensus       621 ~~~i~~~l~liGisvd~~I~l~~r~re~~~  650 (741)
T 3aqp_A          621 IPTIAALLTIVGYSINDSIVVSDRIRENQK  650 (741)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcceEEehHHHHHHHH
Confidence            999999999999999999999999977543
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ... Back     alignment and structure
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A Back     alignment and structure
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A Back     alignment and structure
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ... Back     alignment and structure
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query524
d1iwga7199 Multidrug efflux transporter AcrB transmembrane do 99.5
d1iwga8222 Multidrug efflux transporter AcrB transmembrane do 99.28
d1iwga7199 Multidrug efflux transporter AcrB transmembrane do 98.95
d1iwga8222 Multidrug efflux transporter AcrB transmembrane do 98.02
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Multidrug efflux transporter AcrB transmembrane domain
superfamily: Multidrug efflux transporter AcrB transmembrane domain
family: Multidrug efflux transporter AcrB transmembrane domain
domain: Multidrug efflux transporter AcrB transmembrane domain
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=4.1e-14  Score=130.87  Aligned_cols=126  Identities=18%  Similarity=0.200  Sum_probs=114.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc--cCCCCHHHHHHHHHhhhhhHH
Q 009832           26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSI  103 (524)
Q Consensus        26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~--~~~~~~~~~i~~~l~~~g~~i  103 (524)
                      .++..++++.+++++++|.+.++|.++|. .+...+.+.+|+++||.+|+.++++++  +++.+++|++.++.++.|.|+
T Consensus        65 ~~li~~~~i~~~i~~~~~~m~~~g~~l~~-~s~~~~~i~igi~vd~~i~i~~~~~~~~~~~g~~~~eAi~~a~~~~g~~i  143 (199)
T d1iwga7          65 ATLIPTIAVPVVLLGTFAVLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGAL  143 (199)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHTTTCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHGGGTHHHHH
T ss_pred             hhheeccccchhhHHHHHHhhcCCCchHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCCHHHHHHHHHhHhhhHH
Confidence            46678889999999999999999999997 788888999999999999999877544  457889999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832          104 TLASLSEFLAFAVGSFIPMPA---CRVFSMFAALAVLLDFFLQVTAFVALIE  152 (524)
Q Consensus       104 ~~tslT~~~~F~~~~~s~ip~---v~~f~~~~a~~v~~~~~~~lt~~pa~l~  152 (524)
                      +.|++||++||+...+++.++   ++.||...+.|++++++.+++++|+++.
T Consensus       144 ~~s~lTt~~~f~~l~~~~~~~~~~~~~~g~~i~~gv~~s~i~al~llPall~  195 (199)
T d1iwga7         144 VGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCA  195 (199)
T ss_dssp             HHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888655   8999999999999999999999999874
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure