Citrus Sinensis ID: 009848

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520----
MLSNFLCSQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
ccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHcccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccc
ccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHccccHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHEcccccc
mlsnflcsqtidtTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANdlgsdsdnlyTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLnmysrddlhdETLLKFAKLDFNLLQAAHQKELSDMTRWwkdldiptklpyardRMVEVYFWTLVGvycepkytfGRILVSKIICLISLIDdtfdaygtfEELTLFTEAVKRwdtnvtdtlPACMKFIYNKLLGVYNEAEEELAKQGrsygipyakQTMQEVILMYFTEAKwlkegyvpsveEYKSVALRSIAVLPVVtasfldmgdiATKEVFEWVLKVPKIITASENICRLLDDVAShkfeqkrghipsavECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIamplpllgpvlnlarmsefiyedgvdrytnsykmkDQVALVLKDPVTF
mlsnflcsqtidtttQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVfekfkddegkfkASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKdldiptklpyarDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRytnsykmkdqvalvlkdpvtf
MLSNFLCSQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVfekfkddegkfkASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHalrlplrkalprlearYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEllnliamplpllGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
*****LCSQTIDTT**EQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVL******
MLSNFLCSQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMI*******LAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
MLSNFLCSQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
MLSNFLCSQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
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MLSNFLCSQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query524 2.2.26 [Sep-21-2011]
Q94JS8560 (E)-beta-farnesene syntha N/A no 0.975 0.912 0.687 0.0
Q6Q3H3557 (-)-germacrene D synthase yes no 0.967 0.910 0.543 1e-156
E3W207559 Sesquiterpene synthase OS N/A no 0.982 0.921 0.499 1e-147
Q6Q3H2556 Valencene synthase OS=Vit no no 0.959 0.904 0.529 1e-147
F6M8H7562 Probable sesquiterpene sy N/A no 0.982 0.916 0.495 1e-146
B5A435559 Sesquiterpene synthase OS N/A no 0.982 0.921 0.495 1e-146
F6M8H6562 Probable sesquiterpene sy N/A no 0.982 0.916 0.493 1e-145
F6M8H4559 Probable sesquiterpene sy N/A no 0.982 0.921 0.493 1e-145
F6M8H5562 Probable sesquiterpene sy N/A no 0.982 0.916 0.491 1e-143
E3W208562 Sesquiterpene synthase OS N/A no 0.982 0.916 0.487 1e-142
>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1 Back     alignment and function desciption
 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/519 (68%), Positives = 424/519 (81%), Gaps = 8/519 (1%)

Query: 9   QTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLA 68
           +TID  TQEQ+ ALKQEVRRMIT+  ++++ KLH+IDAVQRLGVAY FEKEIEDEL K++
Sbjct: 43  ETIDAATQEQHAALKQEVRRMITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKVS 102

Query: 69  NDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAA 128
           +DL  DSD+LY VSLRFRL RQQ VKISCDVF+KFKDDEGKFK S+IN++RGMLSLYEAA
Sbjct: 103 HDL--DSDDLYVVSLRFRLFRQQGVKISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAA 160

Query: 129 HLAVHGEVILDEAIVFTTTHLKSMIS----RVISNNLAEQIQHALRLPLRKALPRLEARY 184
           +LA+ GE ILDEAIVFTTTHLKS+IS       ++NLAEQI+H+L++PLRKA  RLEARY
Sbjct: 161 YLAIRGEDILDEAIVFTTTHLKSVISISDHSHANSNLAEQIRHSLQIPLRKAAARLEARY 220

Query: 185 YLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEV 244
           +L++YSRDDLHDETLLKFAKLDFN+LQAAHQKE S MTRWW DL  P K+PYARDR++E 
Sbjct: 221 FLDIYSRDDLHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIIET 280

Query: 245 YFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTD 304
           Y W L+GV  EP   FGRI  SK++C+I+ IDDTFDAYGTFEELTLFTEAV RWD  + D
Sbjct: 281 YIWMLLGVSYEPNLAFGRIFASKVVCMITTIDDTFDAYGTFEELTLFTEAVTRWDIGLID 340

Query: 305 TLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVP 364
           TLP  MKFI   LL +Y EAEEELAK+GRSYGIPYAKQ MQE+I++YFTEAKWL +GYVP
Sbjct: 341 TLPEYMKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVP 400

Query: 365 SVEEYKSVALRSIAVLPVVTASFLDMGD-IATKEVFEWVLKVPKIITASENICRLLDDVA 423
           + +EYKSVALRSI +  +  ASF+D+GD IATK+ FE +LK  K + A+E I RL+DD+A
Sbjct: 401 TFDEYKSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIA 460

Query: 424 SHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLL 483
            +KFEQKRGH PSAVECY  QH VSEEEA K L LE+AN WKD+N EELLN   +PLP+L
Sbjct: 461 GYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDIN-EELLNPTTVPLPML 519

Query: 484 GPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPV 522
             +L  AR   FIY+DG DRYT+S  MK QVAL+L +P+
Sbjct: 520 QRLLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPL 558
Sesquiterpene cyclase catalyzing the production of beta-farnesene from farnesyl diphosphate.
Citrus junos (taxid: 135197)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4EC: 7
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query524
75250254560 RecName: Full=(E)-beta-farnesene synthas 0.975 0.912 0.687 0.0
300079902560 (E)-beta-farnesene synthase [Citrus reti 0.975 0.912 0.684 0.0
313585892551 Tps2-1 [Clausena lansium] 0.982 0.934 0.655 0.0
261343328548 terpene synthase 1 [Citrus sinensis] 0.980 0.937 0.598 1e-177
33316389548 valencene synthase [Citrus sinensis] 0.980 0.937 0.596 1e-175
19880625548 putative terpene synthase [Citrus x para 0.980 0.937 0.595 1e-175
9864189555 terpene synthase [Citrus junos] 0.977 0.922 0.590 1e-173
255563621558 (+)-delta-cadinene synthase isozyme A, p 0.986 0.926 0.541 1e-160
359493937557 PREDICTED: (-)-germacrene D synthase [Vi 0.967 0.910 0.547 1e-157
147828675557 hypothetical protein VITISV_013313 [Viti 0.967 0.910 0.547 1e-157
>gi|75250254|sp|Q94JS8.1|FARS_CITJU RecName: Full=(E)-beta-farnesene synthase; Short=CjFS; AltName: Full=Terpene synthase 10 gi|14134188|gb|AAK54279.1| (E)-beta-farnesene synthase [Citrus junos] Back     alignment and taxonomy information
 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/519 (68%), Positives = 424/519 (81%), Gaps = 8/519 (1%)

Query: 9   QTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLA 68
           +TID  TQEQ+ ALKQEVRRMIT+  ++++ KLH+IDAVQRLGVAY FEKEIEDEL K++
Sbjct: 43  ETIDAATQEQHAALKQEVRRMITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKVS 102

Query: 69  NDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAA 128
           +DL  DSD+LY VSLRFRL RQQ VKISCDVF+KFKDDEGKFK S+IN++RGMLSLYEAA
Sbjct: 103 HDL--DSDDLYVVSLRFRLFRQQGVKISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAA 160

Query: 129 HLAVHGEVILDEAIVFTTTHLKSMIS----RVISNNLAEQIQHALRLPLRKALPRLEARY 184
           +LA+ GE ILDEAIVFTTTHLKS+IS       ++NLAEQI+H+L++PLRKA  RLEARY
Sbjct: 161 YLAIRGEDILDEAIVFTTTHLKSVISISDHSHANSNLAEQIRHSLQIPLRKAAARLEARY 220

Query: 185 YLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEV 244
           +L++YSRDDLHDETLLKFAKLDFN+LQAAHQKE S MTRWW DL  P K+PYARDR++E 
Sbjct: 221 FLDIYSRDDLHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIIET 280

Query: 245 YFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTD 304
           Y W L+GV  EP   FGRI  SK++C+I+ IDDTFDAYGTFEELTLFTEAV RWD  + D
Sbjct: 281 YIWMLLGVSYEPNLAFGRIFASKVVCMITTIDDTFDAYGTFEELTLFTEAVTRWDIGLID 340

Query: 305 TLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVP 364
           TLP  MKFI   LL +Y EAEEELAK+GRSYGIPYAKQ MQE+I++YFTEAKWL +GYVP
Sbjct: 341 TLPEYMKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVP 400

Query: 365 SVEEYKSVALRSIAVLPVVTASFLDMGD-IATKEVFEWVLKVPKIITASENICRLLDDVA 423
           + +EYKSVALRSI +  +  ASF+D+GD IATK+ FE +LK  K + A+E I RL+DD+A
Sbjct: 401 TFDEYKSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIA 460

Query: 424 SHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLL 483
            +KFEQKRGH PSAVECY  QH VSEEEA K L LE+AN WKD+N EELLN   +PLP+L
Sbjct: 461 GYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDIN-EELLNPTTVPLPML 519

Query: 484 GPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPV 522
             +L  AR   FIY+DG DRYT+S  MK QVAL+L +P+
Sbjct: 520 QRLLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPL 558

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|300079902|gb|ADJ67476.1| (E)-beta-farnesene synthase [Citrus reticulata] Back     alignment and taxonomy information
>gi|313585892|gb|ADR71055.1| Tps2-1 [Clausena lansium] Back     alignment and taxonomy information
>gi|261343328|gb|ACX70155.1| terpene synthase 1 [Citrus sinensis] Back     alignment and taxonomy information
>gi|33316389|gb|AAQ04608.1|AF441124_1 valencene synthase [Citrus sinensis] Back     alignment and taxonomy information
>gi|19880625|gb|AAM00426.1|AF411120_1 putative terpene synthase [Citrus x paradisi] Back     alignment and taxonomy information
>gi|9864189|gb|AAG01339.1| terpene synthase [Citrus junos] Back     alignment and taxonomy information
>gi|255563621|ref|XP_002522812.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|223537896|gb|EEF39510.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|350284786|gb|AEQ27766.1| alpha-copaene synthase [Ricinus communis] Back     alignment and taxonomy information
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query524
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.982 0.921 0.449 2.9e-119
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.971 0.891 0.432 1.6e-109
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.952 0.884 0.431 8.3e-106
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.959 0.890 0.412 4.7e-103
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.958 0.904 0.421 6.9e-102
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.965 0.928 0.404 3e-101
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.965 0.913 0.390 1.9e-99
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.948 0.903 0.405 6.4e-99
UNIPROTKB|E2E2N7555 TPS4 "Bicyclogermacrene syntha 0.961 0.908 0.379 1.1e-96
UNIPROTKB|Q49SP6554 Q49SP6 "Germacrene D synthase 0.921 0.871 0.398 1.3e-93
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
 Identities = 237/527 (44%), Positives = 333/527 (63%)

Query:     4 NFLCSQTIDTTTQE-QYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIED 62
             N+ C    +   +E Q + LK++VRR + + VD+   +L++IDA QRLG+AY FE EIE+
Sbjct:    35 NYACEDENEQAQKERQVEELKEQVRRELAATVDKPLQQLNIIDATQRLGIAYHFENEIEE 94

Query:    63 ELQKL------ANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXXXXXXXASMIN 116
              L+ +       N+    S +LY+V+L FRLLRQ   K+SCDV             S++ 
Sbjct:    95 SLEHIYLHTYVENNCFQGSHDLYSVALWFRLLRQDGYKVSCDVFDKFRDYEDNFKNSLME 154

Query:   117 NVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHXXXXXXXXX 176
             + +G+L LYEA HL+VHGE +LD+A+ F  T L+S+++  ++  LAEQ++H         
Sbjct:   155 DAKGLLELYEATHLSVHGEEMLDDALEFAKTRLESIVNH-LNYPLAEQVRHALYRPLRKG 213

Query:   177 XXXXXXXYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPY 236
                    Y+  +Y   D H++ LLK AKLDFNLLQ+ H+KELSDM RWWK LD   K P+
Sbjct:   214 LPRLEAVYFFRIYEAYDSHNKALLKLAKLDFNLLQSLHKKELSDMARWWKSLDFAAKFPF 273

Query:   237 ARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVK 296
             ARDR+VE YFW L GVY EP+Y+  R ++ K+  +IS IDD +DAYGT +EL LFT+A++
Sbjct:   274 ARDRLVEGYFWVL-GVYFEPQYSLARKIIIKVFTMISTIDDIYDAYGTLDELELFTKAMQ 332

Query:   297 RWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAK 356
             RWD    D LP  MK  Y  +L VYNE EEE+  QG  + + YAK+ M++++  Y  EAK
Sbjct:   333 RWDVGSLDQLPEYMKPCYKSILDVYNEIEEEMDNQGSLFRMHYAKEVMKKLVEGYMDEAK 392

Query:   357 WLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENIC 416
             W  E YVP+ EEY  VAL +     + T S+L MG+IA+KE F+W+   P +I ASE++C
Sbjct:   393 WCHEKYVPTFEEYMPVALVTSGYTFLTTISYLGMGEIASKEAFDWLFSHPPVIEASESVC 452

Query:   417 RLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEXXXXX 476
             RL+DD+ SHKFEQ+RGH+ S +ECYMKQ+ V+EEEA      ++   WKD+N EE     
Sbjct:   453 RLMDDMRSHKFEQERGHVASGIECYMKQYGVTEEEAHDEFRKQLVKAWKDIN-EECLRPY 511

Query:   477 XXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPV 522
                      +LNL R+ + IY++  D YT+  K MKD +A +L DP+
Sbjct:   512 RVPKPLLMRILNLTRVIDVIYKNE-DGYTHVKKAMKDNIASLLIDPM 557
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP6 Q49SP6 "Germacrene D synthase 2" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94JS8FARS_CITJU4, ., 2, ., 3, ., 4, 70.68780.97510.9125N/Ano
Q84UU4HUMS_ARATH4, ., 2, ., 3, ., -0.40760.97900.9378yesno
Q6Q3H3TPSGD_VITVI4, ., 2, ., 3, ., 7, 50.54380.96750.9102yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.976
3rd Layer4.2.3.47LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027449001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (557 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-107
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-107
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 7e-72
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 3e-38
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 2e-28
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 6e-24
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 6e-10
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  655 bits (1693), Expect = 0.0
 Identities = 251/523 (47%), Positives = 359/523 (68%), Gaps = 11/523 (2%)

Query: 8   SQTIDTTTQEQYDALKQEVRRMITSAVDEISH--KLHLIDAVQRLGVAYQFEKEIEDELQ 65
             + +   +E+ + LK+EVR+M+  +   +    +L LID +QRLG++Y FE EI++ L 
Sbjct: 22  DYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILD 81

Query: 66  KLANDLG----SDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGM 121
            +         S+ D+LYT +L FRLLRQ    +S DVF+KFKD++GKFK S+  +V+GM
Sbjct: 82  YIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGM 141

Query: 122 LSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR--VISNNLAEQIQHALRLPLRKALPR 179
           LSLYEA+HL+  GE ILDEA+ FTT HL+  +    +I  +L+ +I++AL +PL  +LPR
Sbjct: 142 LSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPR 201

Query: 180 LEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARD 239
           LEAR+Y+  Y ++D H+ETLL+ AKLDFN+LQA HQ+EL  ++RWWKDLD+ +KLP+ARD
Sbjct: 202 LEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARD 261

Query: 240 RMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWD 299
           R+VE YFW   G Y EP+Y+  RI ++K I LI++IDDT+D YGT EEL LFTEAV+RWD
Sbjct: 262 RLVECYFWA-AGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWD 320

Query: 300 TNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLK 359
            +  D LP  MK ++  LL   NE EEEL K+G SY +PY K+  ++++  Y  EAKW  
Sbjct: 321 ISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAH 380

Query: 360 EGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLL 419
           EGYVP+ EEY   AL SI + P++  SFL MGDI T+E FEW+   PK++ AS  I RL+
Sbjct: 381 EGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLM 440

Query: 420 DDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMP 479
           +D+A+++ E KRG + S++ECYMK++ VSEEEA + +   I + WK+LN E L     +P
Sbjct: 441 NDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVP 500

Query: 480 LPLLGPVLNLARMSEFIYEDGVDRYTNSY-KMKDQVALVLKDP 521
            P+    LNLAR+ +  Y++G D +T+   ++KD +  +L +P
Sbjct: 501 RPIKQRFLNLARVIDVFYKEG-DGFTHPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 524
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.85
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.81
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.67
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 92.7
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 92.61
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 88.58
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 87.64
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 84.13
CHL00151323 preA prenyl transferase; Reviewed 83.81
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 83.01
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=2.8e-147  Score=1207.82  Aligned_cols=504  Identities=50%  Similarity=0.876  Sum_probs=489.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhc--hhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhc-cC---CCCCChhhhHHHHHH
Q 009848           14 TTQEQYDALKQEVRRMITSA--VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LG---SDSDNLYTVSLRFRL   87 (524)
Q Consensus        14 ~~~~~~~~lk~~v~~~l~~~--~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~-~~---~~~~dl~~~al~FRl   87 (524)
                      .+.+++++||++||+||...  +.|++++|++||+||||||+|||++||+++|+++|++ ..   ....||++|||+|||
T Consensus        28 ~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~dl~~~al~FRl  107 (542)
T cd00684          28 ELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRL  107 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHH
Confidence            68999999999999999865  6899999999999999999999999999999999996 11   235799999999999


Q ss_pred             hhhcCcccchhhhhccccccccccccccccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhhh---cCCCcHHHH
Q 009848           88 LRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR---VISNNLAEQ  164 (524)
Q Consensus        88 LR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~glL~Ly~As~l~~~gE~iL~ea~~fs~~~L~~~~~~---~~~~~l~~~  164 (524)
                      ||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||||++||++||++++++   + +++|+++
T Consensus       108 LR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~-~~~l~~~  186 (542)
T cd00684         108 LRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWII-DPDLSGE  186 (542)
T ss_pred             HHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhccCCC-CchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999986   5 7899999


Q ss_pred             HHHHccCCccCCcchhHHHhhHHhhcCCCcCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhHHHHHHHH
Q 009848          165 IQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEV  244 (524)
Q Consensus       165 V~~aL~~P~~~~~~rlear~yi~~y~~~~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~~aRdr~ve~  244 (524)
                      |++||++|||+++||+|||+||++|++++++|++||||||+|||+||++||+||+++++||+++||.++|||+|+|+++|
T Consensus       187 V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~  266 (542)
T cd00684         187 IEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVEC  266 (542)
T ss_pred             HHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             HHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHH
Q 009848          245 YFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEA  324 (524)
Q Consensus       245 yf~a~~a~~feP~~s~~Rl~~ak~~~l~~v~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei  324 (524)
                      |||++ |++|||++|.+|+++||+++|+|++||+||.|||++|++.||+||+|||+++++++|+|||+||.+++++++++
T Consensus       267 yf~~~-a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei  345 (542)
T cd00684         267 YFWAA-GTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEI  345 (542)
T ss_pred             HHHHH-hcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHH
Confidence            99999 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHHhhc
Q 009848          325 EEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLK  404 (524)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~~  404 (524)
                      +.++.+++++++++|++++|++++++|++||+|+++||+||++|||++|++|+|++++++++++++|+.+|+++++|+..
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~  425 (542)
T cd00684         346 EEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLES  425 (542)
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence            99988888889999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             hhHHHHHHHHHHHHhcCccchhhhhhcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhcc-CCCChhHH
Q 009848          405 VPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNL-IAMPLPLL  483 (524)
Q Consensus       405 ~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln~~e~l~~-~~~p~~~~  483 (524)
                      +|+|+++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|+|+++++++|+++||++| ++++++ +++|++|+
T Consensus       426 ~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln-~e~l~~~~~~p~~~~  504 (542)
T cd00684         426 RPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELN-EEFLKPSSDVPRPIK  504 (542)
T ss_pred             cHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCCHHHH
Confidence            7999999999999999999999999999999999999999999999999999999999999999 999998 78999999


Q ss_pred             HHHHHHhhhhhhhcccCCCCCCCChh-HHHHHHHhhcCC
Q 009848          484 GPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDP  521 (524)
Q Consensus       484 ~~~~N~aR~~~~~Y~~~~Dg~t~~~~-~k~~I~~ll~~P  521 (524)
                      ++++|+||+++++|+++ ||||.|+. ||++|++||++|
T Consensus       505 ~~~~n~~r~~~~~Y~~~-D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         505 QRFLNLARVIDVFYKEG-DGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             HHHHHHHHHHHHHhcCC-CCCCCccHHHHHHHHHHhcCC
Confidence            99999999999999999 99999966 999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>CHL00151 preA prenyl transferase; Reviewed Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-120
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-104
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-103
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-103
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-103
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-103
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-103
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-102
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-102
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-100
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 4e-75
2j5c_A569 Rational Conversion Of Substrate And Product Specif 2e-72
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 9e-69
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 3e-67
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 9e-59
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 3e-50
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 3e-47
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 1e-09
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  428 bits (1101), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/517 (42%), Positives = 319/517 (61%), Gaps = 5/517 (0%)
Query: 9   QTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLA 68
           + ID  T++++  LK+EVR+MI + +   + KL  ID+VQRLGV+Y F KEIEDEL+ + 
Sbjct: 42  KNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIY 101
Query: 69  NDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAA 128
           ++     ++LYT S+RFRLLR+    +SCDV            +S+ ++VRG+L LY+A+
Sbjct: 102 HNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQAS 161
Query: 129 HLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNM 188
           +L VHGE ILDEAI FTT HL S+    + + L+E++ H                +YL++
Sbjct: 162 YLRVHGEDILDEAISFTTHHL-SLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSV 220
Query: 189 YSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWT 248
           Y   + H++ LL+FAK+DFN+LQ  H+KELS++ RWWKDLD   KLPYARDR+VE YFW 
Sbjct: 221 YQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFW- 279
Query: 249 LVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPA 308
           + GVY EP+Y+ GR +++K+I + S++DDT+D+Y T+EEL  +T A++RWD    D +P 
Sbjct: 280 ISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPE 339
Query: 309 CMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEE 368
            MK  Y  LL VY E  + +A+ GR Y + YAK  M  +   Y  EAKW  + Y PS EE
Sbjct: 340 YMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEE 399
Query: 369 YKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFE 428
           +K+ AL +     +   SF+ MGDI T E F+W    PKII AS  ICR +DDVA HKF+
Sbjct: 400 FKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFK 459
Query: 429 QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLN 488
            +R    SA+ECYM+++ V+ +EA       + + WKDLN +E               LN
Sbjct: 460 HRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLN-QEFLKPTEMPTEVLNRSLN 518
Query: 489 LARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVTF 524
           LAR+ + +Y +G D YT   K  K  +  +L +P+  
Sbjct: 519 LARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-177
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-174
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-172
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-172
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-169
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-164
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-147
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-146
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-140
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 8e-95
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 3e-32
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 3e-29
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 4e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 3e-11
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 1e-05
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  510 bits (1313), Expect = e-177
 Identities = 242/516 (46%), Positives = 346/516 (67%), Gaps = 5/516 (0%)

Query: 8   SQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKL 67
            + ID  T++++  LK+EVR+MI + +   + KL  ID+VQRLGV+Y F KEIEDEL+ +
Sbjct: 41  DKNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENI 100

Query: 68  ANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEA 127
            ++     ++LYT S+RFRLLR+    +SCDVF KFKD++G FK+S+ ++VRG+L LY+A
Sbjct: 101 YHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQA 160

Query: 128 AHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLN 187
           ++L VHGE ILDEAI FTT HL   ++  + + L+E++ HAL+  +R+ LPR+EAR+YL+
Sbjct: 161 SYLRVHGEDILDEAISFTTHHLSLAVAS-LDHPLSEEVSHALKQSIRRGLPRVEARHYLS 219

Query: 188 MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFW 247
           +Y   + H++ LL+FAK+DFN+LQ  H+KELS++ RWWKDLD   KLPYARDR+VE YFW
Sbjct: 220 VYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFW 279

Query: 248 TLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLP 307
              GVY EP+Y+ GR +++K+I + S++DDT+D+Y T+EEL  +T A++RWD    D +P
Sbjct: 280 I-SGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIP 338

Query: 308 ACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVE 367
             MK  Y  LL VY E  + +A+ GR Y + YAK  M  +   Y  EAKW  + Y PS E
Sbjct: 339 EYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFE 398

Query: 368 EYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKF 427
           E+K+ AL +     +   SF+ MGDI T E F+W    PKII AS  ICR +DDVA HKF
Sbjct: 399 EFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKF 458

Query: 428 EQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVL 487
           + +R    SA+ECYM+++ V+ +EA       + + WKDLN +E L    MP  +L   L
Sbjct: 459 KHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLN-QEFLKPTEMPTEVLNRSL 517

Query: 488 NLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPV 522
           NLAR+ + +Y +G D YT   K  K  +  +L +P+
Sbjct: 518 NLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPI 552
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query524
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.77
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 88.87
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 88.71
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 87.55
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 86.94
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 81.94
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 81.26
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 81.25
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 80.63
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=7.9e-160  Score=1294.76  Aligned_cols=512  Identities=47%  Similarity=0.841  Sum_probs=482.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHhhchhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhccCCCCCChhhhHHHHHHh
Q 009848            9 QTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL   88 (524)
Q Consensus         9 ~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~dl~~~al~FRlL   88 (524)
                      ....+.+.+|+|+||+|||+||.++..|++++|+|||+||||||+|||++||+++|+++|++...+..||++|||+||||
T Consensus        42 ~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlL  121 (554)
T 3g4d_A           42 KNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLL  121 (554)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence            34467899999999999999997534789999999999999999999999999999999985112237999999999999


Q ss_pred             hhcCcccchhhhhccccccccccccccccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhhhcCCCcHHHHHHHH
Q 009848           89 RQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHA  168 (524)
Q Consensus        89 R~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~glL~Ly~As~l~~~gE~iL~ea~~fs~~~L~~~~~~~~~~~l~~~V~~a  168 (524)
                      |||||+||||||++|+|++|+|++++.+|++||||||||||+++|||+|||||+.||++||++++.++ +++|+++|+||
T Consensus       122 R~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~-~~~l~~~V~~a  200 (554)
T 3g4d_A          122 REHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASL-DHPLSEEVSHA  200 (554)
T ss_dssp             HHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTC-CTTHHHHHHHH
T ss_pred             HhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhcc-CchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998876 78899999999


Q ss_pred             ccCCccCCcchhHHHhhHHhhcCCCcCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH
Q 009848          169 LRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWT  248 (524)
Q Consensus       169 L~~P~~~~~~rlear~yi~~y~~~~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~~aRdr~ve~yf~a  248 (524)
                      |++|||+++||+|||+||++|++++++|+.||||||+|||+||++||+||++++|||+++||.++|||||||++|||||+
T Consensus       201 L~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~  280 (554)
T 3g4d_A          201 LKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWI  280 (554)
T ss_dssp             HHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHH
T ss_pred             hCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999778999999999999999


Q ss_pred             hhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHH
Q 009848          249 LVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEEL  328 (524)
Q Consensus       249 ~~a~~feP~~s~~Rl~~ak~~~l~~v~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~  328 (524)
                      + |++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+++++++|++.++
T Consensus       281 ~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~  359 (554)
T 3g4d_A          281 S-GVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLV  359 (554)
T ss_dssp             H-HHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             H-HhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9 999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHHhhchhHH
Q 009848          329 AKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKI  408 (524)
Q Consensus       329 ~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~~~p~l  408 (524)
                      .++||+++++|++++|+++++||++||+|+.+||+||+||||+||.+|+|++++++++++|||+.+|+++++|+.++|+|
T Consensus       360 ~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i  439 (554)
T 3g4d_A          360 AEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKI  439 (554)
T ss_dssp             GGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHH
T ss_pred             HHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHH
Confidence            89998899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCccchhhhhhcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHH
Q 009848          409 ITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLN  488 (524)
Q Consensus       409 ~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~~~~~N  488 (524)
                      +++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|++++++||+++||+|| ++|++++++|++|+++++|
T Consensus       440 ~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN-~e~l~~~~~p~~~~~~~~N  518 (554)
T 3g4d_A          440 IQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLN-QEFLKPTEMPTEVLNRSLN  518 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH-HHHSSSCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999 9999998999999999999


Q ss_pred             HhhhhhhhcccCCCCCCCChh-HHHHHHHhhcCCcCC
Q 009848          489 LARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVTF  524 (524)
Q Consensus       489 ~aR~~~~~Y~~~~Dg~t~~~~-~k~~I~~ll~~Pi~~  524 (524)
                      +||++++||+++ ||||.|+. ||++|++||++|||+
T Consensus       519 laR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          519 LARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHHSCC------CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHhcCC-CCCCCccHHHHHHHHHHhcCCCCC
Confidence            999999999999 99999965 999999999999986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 524
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-127
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-126
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 2e-64
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 4e-61
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 2e-46
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 2e-31
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  372 bits (956), Expect = e-127
 Identities = 109/328 (33%), Positives = 186/328 (56%), Gaps = 5/328 (1%)

Query: 197 ETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEP 256
             + + AKL+FN++QA HQ+EL D++RWW  L  P KLP+ RDR+VE +FW  VG++   
Sbjct: 3   PLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWA-VGMFEPH 61

Query: 257 KYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNK 316
           ++ + R + + II L ++IDD +D YGT +EL LFT+  KRWDT     LP  M+  Y  
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 317 LLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRS 376
           +    ++A  ++ K+   + + Y ++++ +++  YF EAKW   GY PS++EY ++A  S
Sbjct: 122 VHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 181

Query: 377 IAVLPVVTASFLDMGD-IATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIP 435
           +A   +++ ++    +      V + + +   I+  +  I RL DD+ +  FE  RG +P
Sbjct: 182 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVP 241

Query: 436 SAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEF 495
             ++CYMK+   SEEEA + +   I   WKD+N   +      P  ++    N+ R+++F
Sbjct: 242 KTIQCYMKETNASEEEAVEHVKFLIREAWKDMN-TAIAAGYPFPDGMVAGAANIGRVAQF 300

Query: 496 IYEDGVDRYTNSYK-MKDQVALVLKDPV 522
           IY  G D +   +    + +A +L +P 
Sbjct: 301 IYLHG-DGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query524
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.97
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.49
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 84.08
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=2.4e-98  Score=769.41  Aligned_cols=327  Identities=46%  Similarity=0.801  Sum_probs=310.4

Q ss_pred             CcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHHh
Q 009848          195 HDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISL  274 (524)
Q Consensus       195 ~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~~aRdr~ve~yf~a~~a~~feP~~s~~Rl~~ak~~~l~~v  274 (524)
                      .|++||||||||||+||++||+||+.++|||+++|+.+++||+|||++|||||++ |++|||+||.+|++|||+++++++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~~-~~~fEP~~s~~R~~~aK~~~l~ti   79 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVKTISMISI   79 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHH-HHCCSGGGHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHHH-HhhcChhhHHHHHHHHHHHHHHHh
Confidence            4899999999999999999999999999999999998789999999999999999 999999999999999999999999


Q ss_pred             hhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Q 009848          275 IDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTE  354 (524)
Q Consensus       275 ~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~E  354 (524)
                      +||+||+|||+||++.||+||+|||.+++++||+|||+||.++++++++++.++.++||.+++++++++|++++++|++|
T Consensus        80 ~DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~l~E  159 (328)
T d5easa2          80 VDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVE  159 (328)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999889888899999999999999999999


Q ss_pred             HHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCccchhhhhhcCCC
Q 009848          355 AKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHI  434 (524)
Q Consensus       355 A~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~  434 (524)
                      |+|+++||+||+||||+||.+|+|++++++++++++|. ++++.++|+.++|+|+++++.++||+|||+||++|+++|++
T Consensus       160 A~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~-~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~~  238 (328)
T d5easa2         160 STWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQI  238 (328)
T ss_dssp             HHHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCC-CcHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCCC
Confidence            99999999999999999999999999999999999997 57788999999999999999999999999999999999999


Q ss_pred             CchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHhhhhhhhcccCCCCCCCChh-HHHH
Q 009848          435 PSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQ  513 (524)
Q Consensus       435 ~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~~Dg~t~~~~-~k~~  513 (524)
                      +|+|.|||+|+|+|+|+|+++++++|+++||++| +++++++++|++|+++++|+||+++++|++|.||||+|++ +|++
T Consensus       239 ~s~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln-~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~k~~  317 (328)
T d5easa2         239 ATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPH  317 (328)
T ss_dssp             TCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH-HHTSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CCHHH
T ss_pred             CeeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHH
Confidence            9999999999999999999999999999999999 9999999999999999999999999999976599999986 9999


Q ss_pred             HHHhhcCCcCC
Q 009848          514 VALVLKDPVTF  524 (524)
Q Consensus       514 I~~ll~~Pi~~  524 (524)
                      |++||++|||+
T Consensus       318 i~~ll~epi~~  328 (328)
T d5easa2         318 IINLLVDSIKI  328 (328)
T ss_dssp             HHHHHTCCCCC
T ss_pred             HHHHhccCCcC
Confidence            99999999996
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure